Query 001844
Match_columns 1006
No_of_seqs 287 out of 789
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 3.4E-70 7.3E-75 619.4 52.7 616 34-987 89-727 (734)
2 PF04130 Spc97_Spc98: Spc97 / 100.0 6.5E-62 1.4E-66 585.8 48.1 534 45-889 1-542 (542)
3 KOG2065 Gamma-tubulin ring com 100.0 1.1E-57 2.4E-62 495.0 49.2 651 42-989 1-676 (679)
4 KOG2000 Gamma-tubulin complex, 100.0 4.5E-50 9.8E-55 481.0 37.9 539 36-919 201-761 (879)
5 KOG4344 Uncharacterized conser 100.0 6.5E-39 1.4E-43 357.5 39.3 752 26-977 279-1113(1121)
6 KOG4344 Uncharacterized conser 93.8 0.0066 1.4E-07 70.9 -3.3 210 34-262 358-582 (1121)
7 PF14609 GCP5-Mod21: gamma-Tub 60.6 5 0.00011 46.7 1.9 70 34-107 177-246 (653)
8 KOG2000 Gamma-tubulin complex, 23.1 2.5E+02 0.0054 36.3 8.2 118 762-890 589-710 (879)
9 PF14966 DNA_repr_REX1B: DNA r 20.7 6.9E+02 0.015 23.3 10.5 76 84-163 2-81 (97)
10 PF10824 DUF2580: Protein of u 12.1 1E+03 0.022 21.1 8.6 61 79-139 8-69 (100)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=3.4e-70 Score=619.35 Aligned_cols=616 Identities=21% Similarity=0.347 Sum_probs=472.6
Q ss_pred CccCCHHHHHHHHHHHhcCCCCccEEEeCC--C---ccEEEccCceeccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001844 34 SSRTNEVDLVRGVLQMLQGLSSSLFYWDES--V---RSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVE 108 (1006)
Q Consensus 34 ~~~i~E~~lvrelL~~L~G~~s~lf~~~~~--~---~~f~v~~~~~l~~lS~~sl~~lL~~~~~~g~~~~~Lr~fv~~~~ 108 (1006)
++-.+|..+++|++++|.|++|.++.++.. . .+..-++.+.|..--+.+++.+++++++.|.+|..+++||+...
T Consensus 89 ~lp~QE~~li~dLl~af~Gv~~ryV~~Q~~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s 168 (734)
T KOG2001|consen 89 PLPSQESKLIDDLLYAFVGVEGRYVSPQYMIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETS 168 (734)
T ss_pred CchhHHHHHHHHHHHHHcCCCcceeecchhhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344689999999999999999999987521 1 11112333444333377999999999999999999999999875
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHhhccCCcccccCCC
Q 001844 109 TTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNM 188 (1006)
Q Consensus 109 ~~~~~~~~~~qAfa~al~~~L~~y~~~l~~lE~~~~~~~~~~~~sLl~L~~~l~~~~~~~~~L~~l~~~~~~~~~~~~~~ 188 (1006)
.. .+|.|.+|+|+|+++.|.+|+..+.++|.+... ...||..|...++|+...++.++..+....
T Consensus 169 ~f--~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~----~~lslq~L~~y~qP~m~~m~~l~~~~~~~~--------- 233 (734)
T KOG2001|consen 169 FF--EYGQVNHALAAALRELLYDYYELISQLEQELRT----NRLSLQDLWFYMQPMMRSMRRLAVAATTTV--------- 233 (734)
T ss_pred hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHhhhHHHHHHHHHHHhhhh---------
Confidence 32 589999999999999999999999999999883 368999999999999888876666554322
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCccceEEEccCC----C
Q 001844 189 PVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAI----S 264 (1006)
Q Consensus 189 ~~~~~~~~~~lLs~Ly~~~~~~~~~~~gd~~~~~~l~~L~~~~~~PYl~~l~~Wi~~G~L~D~~~EFFI~~~~~~----~ 264 (1006)
.+.+.|+.+|+.|.+.+..+ .||+.++.++..++..+++||++|+.+||..|.+.|||+||||..|... .
T Consensus 234 --~~~~~gg~vls~l~~~~~~~----~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k~~l~ 307 (734)
T KOG2001|consen 234 --KKVCKGGAVLSLLQSSIKEN----LGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDNLITKEDLP 307 (734)
T ss_pred --ccccCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhcchhhhcCc
Confidence 24579999999999888663 6999999999999999999999999999999999999999999988321 1
Q ss_pred C-CcccccccceEEeecccccccccccccccccccccchhhhhhccccccccccccccCCCCCCcccHHHHHHHHHhhHH
Q 001844 265 V-DKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKS 343 (1006)
Q Consensus 265 ~-~~~~~W~~~y~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~Fl~~~a~~Il~aGKs 343 (1006)
- ..++||+.+|+++. ..+|.|+...+++||.|||+
T Consensus 308 ed~~d~YW~~RY~ir~--------------------------------------------dqiP~fL~~~adkIL~tGKY 343 (734)
T KOG2001|consen 308 EDYTDKYWDQRYTIRK--------------------------------------------DQIPGFLLSEADKILRTGKY 343 (734)
T ss_pred hhhhHHHHHHhheech--------------------------------------------hhcchHHHHHHHHHHHhhhH
Confidence 1 36679999999997 36999999999999999999
Q ss_pred HHHHHhhCCCCCchhhhhccCCCCCCCCccccccccccccchhHHHHHhhhcccCCCCccccccccCCCCCccccCCCcc
Q 001844 344 LQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPS 423 (1006)
Q Consensus 344 l~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 423 (1006)
||++|+||+... . | +.+
T Consensus 344 LNVvReC~~~v~-----~--------------p----------------------------------------~~~---- 360 (734)
T KOG2001|consen 344 LNVVRECGKIVT-----I--------------P----------------------------------------QSS---- 360 (734)
T ss_pred HHHHHHhCccCC-----C--------------C----------------------------------------cch----
Confidence 999999995432 0 0 000
Q ss_pred ccccccccCCCcccccccccchhhHHHHHHhhhhhccccccccCCcccCCCCccccccchhhhhcccccccccCCCCCcc
Q 001844 424 YMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVI 503 (1006)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1006)
| +. . +|.
T Consensus 361 ----------n----------~~---------------~-------------------------------------~~~- 367 (734)
T KOG2001|consen 361 ----------N----------EI---------------N-------------------------------------DPA- 367 (734)
T ss_pred ----------h----------hh---------------c-------------------------------------ccc-
Confidence 0 00 0 000
Q ss_pred cccccccccccccchhhhhhcccccCCCCCChHHHHHHHhccccCCcccccCCCcccccccCccchhhccchhhhhcccC
Q 001844 504 SVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLF 583 (1006)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (1006)
+ | .
T Consensus 368 -----~--------------~-------------------------------~--------------------------- 370 (734)
T KOG2001|consen 368 -----D--------------L-------------------------------M--------------------------- 370 (734)
T ss_pred -----c--------------c-------------------------------c---------------------------
Confidence 0 0 0
Q ss_pred CCCccccccccccccccccccccCCCCcccchhhccccCCCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccHH
Q 001844 584 PFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLM 663 (1006)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~s~lp~~~l~~~l~~~I~~qy~~~n~~Ll~lL~~~~~L~ 663 (1006)
.......|.+.|..||..++++|+++++|.
T Consensus 371 --------------------------------------------------e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~ 400 (734)
T KOG2001|consen 371 --------------------------------------------------ESNHEEYIKKAYEFANEILLKLLFEEYDLV 400 (734)
T ss_pred --------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 001345789999999999999999999999
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhccccCcCCCCCCceEEEEecc---------
Q 001844 664 DELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITES--------- 734 (1006)
Q Consensus 664 ~hL~aLr~~fLLg~GDF~~~f~~~lf~~L~~~~~~~~~~~L~~lLq~Al~~ss~~~~~~~pd~L~~~i~~~--------- 734 (1006)
.||+.||+||||.+|||+.+|++.+.++|.++...+.+.+|+.+|+.|++..+.....+..+.|.+.+...
T Consensus 401 ~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~ 480 (734)
T KOG2001|consen 401 GHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHI 480 (734)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999533321112225566665432
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCccceeEEEEEeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001844 735 HGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWM 814 (1006)
Q Consensus 735 ~~~d~de~~~~~~~~~~~R~~~~~~~~~~~~d~l~L~Y~vpwPLslIlt~~~m~~Y~~IFrfLl~lKra~~~L~~~w~~l 814 (1006)
.++...+... ....+|+. ..++.|+++++++|+|||||++||++++|.+||.|||+|+.+|++++.|+.+|...
T Consensus 481 l~ie~~e~~a--ns~~dP~~----~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~ 554 (734)
T KOG2001|consen 481 LAIEPEEESA--NSQADPLE----HLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSH 554 (734)
T ss_pred HhcCcccccc--ccccCcch----hccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222111110 01112221 14678999999999999999999999999999999999999999999999999764
Q ss_pred HhccCCCCC-chhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 001844 815 WKGRSLATN-SHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPD 893 (1006)
Q Consensus 815 ~k~r~~~~~-~~~~~~~~~LR~~m~~Fv~~L~~Yl~~~VIe~~w~~f~~~L~~a~dldel~~~H~~fL~~I~~~cfL~~~ 893 (1006)
.+.|.+.+. .+..+..+.||+||++||.+|++|++.+||||+|..|+..+++++++|++++.|+.||+.|++.|+|+..
T Consensus 555 ~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~ 634 (734)
T KOG2001|consen 555 SKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLS 634 (734)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCh
Confidence 444433222 2346778899999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhH-HHHHHHHHHHHHH-HHHHHHHHHhhhccCCchhHHHHH
Q 001844 894 KLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCE-MEVDRIEKQFDDC-IVFLLRVLSFKLNVGHFPHLADLV 971 (1006)
Q Consensus 894 ~~~~~i~~~i~~il~l~l~F~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~F~~~-~~~Li~vL~~~~~~~~~~~L~~Ll 971 (1006)
. .+.+.+.++..+|+.||++.+.+......-....... .+-+.-+++|... +..+..+++.. ...-..++.+|+
T Consensus 635 ~---~llk~~~kL~~vCl~f~~~~q~~~~~~~~~~~~~~~~~~~~d~~~k~~~t~li~~leei~~~~-~~~f~~~l~~L~ 710 (734)
T KOG2001|consen 635 P---LLLKSFSKLYKVCLMFCSFTQKLTQSDPTDEEKNSVGHPQFDEGRKEDDTLLISKLEEIISNA-DKNFRDCLKNLL 710 (734)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccchhhhhhhhhHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 3 4678999999999999999987653221100000000 0112222233333 33333333322 222346899999
Q ss_pred HHhc-cCcccccCCCCc
Q 001844 972 TRIN-YNYFYMSDSGNL 987 (1006)
Q Consensus 972 ~RLD-fN~fY~~~~~~l 987 (1006)
.||+ |+.|++..-.++
T Consensus 711 ~rlsk~~~~e~s~ld~~ 727 (734)
T KOG2001|consen 711 QRLSKFSFFESSSLDKL 727 (734)
T ss_pred HHccccccccHHHHHHH
Confidence 9999 888887554443
No 2
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=6.5e-62 Score=585.77 Aligned_cols=534 Identities=31% Similarity=0.543 Sum_probs=356.2
Q ss_pred HHHHHhcCCCCccEEEeCCCccEEEccCceeccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHH
Q 001844 45 GVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSA 124 (1006)
Q Consensus 45 elL~~L~G~~s~lf~~~~~~~~f~v~~~~~l~~lS~~sl~~lL~~~~~~g~~~~~Lr~fv~~~~~~~~~~~~~~qAfa~a 124 (1006)
|+|++|+|++|.+|.|++..++|.+++++. +|+++.++++++++++++|+.|++|+.|++.+.......|++.+||+.+
T Consensus 1 dll~~L~G~~s~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~~~~~~~~~~a~~~~ 79 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKDSDRFELRPNIS-SHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSSSSERGPTLQAFASA 79 (542)
T ss_dssp HHHHHHTT---SSSEEETT-TEEE--S-----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS----S-SHHHHHHHHH
T ss_pred CHHHHccCCCCceEEEeCCCCeEEECCCcc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Confidence 789999999999999999889999999887 9999999999999999999999999999998653221369999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHhhccCCcccccCCCCCCCccchhhHHHHHH
Q 001844 125 VSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLY 204 (1006)
Q Consensus 125 l~~~L~~y~~~l~~lE~~~~~~~~~~~~sLl~L~~~l~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~lLs~Ly 204 (1006)
|+++|.+|+..|..+|.++... ..+||+.+...++++..+++.|..++...... ..+...+|+.+|+.||
T Consensus 80 l~~~L~~y~~~l~~le~~~~~~---~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~-------~~~~~~~g~~lL~~L~ 149 (542)
T PF04130_consen 80 LSSILQEYREFLSELEESILSN---GSLSLLQLLAQLRPWFRRLEALADLIQEIIQL-------SLSQNLRGGQLLSILY 149 (542)
T ss_dssp HHHHTHHHHHHHHHHHHHHHH----TT--HHHHHHHTHHHHHHHHHHHHHHHHH-----------HHHT--THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccccCCcHHHHHHHHH
Confidence 9999999999999999999853 57899999999999999999999998754210 0113468999999999
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCccceEEEccC-CCCCcccccccceEEeecccc
Q 001844 205 KKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRA-ISVDKAEFWEKSYVLRQLQCW 283 (1006)
Q Consensus 205 ~~~~~~~~~~~gd~~~~~~l~~L~~~~~~PYl~~l~~Wi~~G~L~D~~~EFFI~~~~~-~~~~~~~~W~~~y~l~~~~~~ 283 (1006)
..+. ..++|++..++++..||..+++||+++|..||.+|.+.||++||||+.+.+ ....+++||.++|.++.
T Consensus 150 ~~~~---~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~~~~~~~~~w~~~f~l~~---- 222 (542)
T PF04130_consen 150 ERIY---HQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKESNSESSEDFWDDRFVLRE---- 222 (542)
T ss_dssp HHH------HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE----------------EEE-G----
T ss_pred HHHh---hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccccCcccchhhccCEEECc----
Confidence 8762 124799999999999999999999999999999999999999999999943 55668889999999987
Q ss_pred cccccccccccccccccchhhhhhccccccccccccccCCCCCCccc-HHHHHHHHHhhHHHHHHHhhCCCCCchhhhhc
Q 001844 284 KLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFI-KDIAKSIISAGKSLQLIRHVSSKSNDDRIECL 362 (1006)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~Fl-~~~a~~Il~aGKsl~lLr~~~~~~~~~~~~~~ 362 (1006)
..+|.|+ .++|++|+.+||++++||.+++.+. ...
T Consensus 223 ----------------------------------------~~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~----~~~ 258 (542)
T PF04130_consen 223 ----------------------------------------SRVPSFLSKDLAEKILEIGKSLRLLRSCNPEHE----WCS 258 (542)
T ss_dssp ----------------------------------------GGS-TTS-HHHHHHHHHHHHHHHT------S---------
T ss_pred ----------------------------------------ccCChhcCHHHHHHHHHHHHHHHHHHHhccccc----cch
Confidence 3599999 8999999999999999999987765 100
Q ss_pred cCCCCCCCCccccccccccccchhHHHHHhhhcccCCCCccccccccCCCCCccccCCCccccccccccCCCcccccccc
Q 001844 363 GNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLT 442 (1006)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 442 (1006)
+. .. . ....
T Consensus 259 --------------------------------------~~---------------~~-~-----------------~~~~ 267 (542)
T PF04130_consen 259 --------------------------------------DQ---------------EL-S-----------------SDLC 267 (542)
T ss_dssp ---------------------------------------T---------------T--S-----------------HHH-
T ss_pred --------------------------------------hc---------------cc-h-----------------hhhh
Confidence 00 00 0 0000
Q ss_pred cchhhHHHHHHhhhhhccccccccCCcccCCCCccccccchhhhhcccccccccCCCCCcccccccccccccccchhhhh
Q 001844 443 HSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNAL 522 (1006)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1006)
..+ .
T Consensus 268 -------------------------------------------------------~~~-~-------------------- 271 (542)
T PF04130_consen 268 -------------------------------------------------------LSD-K-------------------- 271 (542)
T ss_dssp -----------------------------------------------------------H--------------------
T ss_pred -------------------------------------------------------hhh-h--------------------
Confidence 000 0
Q ss_pred hcccccCCCCCChHHHHHHHhccccCCcccccCCCcccccccCccchhhccchhhhhcccCCCCcccccccccccccccc
Q 001844 523 NLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELL 602 (1006)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1006)
.+... . ...++.
T Consensus 272 ---------------~~~~~--~-----------------------------------~~~~~~---------------- 283 (542)
T PF04130_consen 272 ---------------ESSES--S-----------------------------------SLQPFE---------------- 283 (542)
T ss_dssp ---------------HHHHH--H-----------------------------------HHHT-S----------------
T ss_pred ---------------hhhhH--H-----------------------------------Hhcccc----------------
Confidence 00000 0 000000
Q ss_pred ccccCCCCcccchhhccccCCCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccCCcchHH
Q 001844 603 PFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQ 682 (1006)
Q Consensus 603 ~~~~~~~~~~~~~~w~~~~~~~~s~lp~~~l~~~l~~~I~~qy~~~n~~Ll~lL~~~~~L~~hL~aLr~~fLLg~GDF~~ 682 (1006)
......+...|++++..+|+.++++|+++++|.+||+++|+||||++|||++
T Consensus 284 ----------------------------~~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~l~~~l~~l~~~~Ll~~gdf~~ 335 (542)
T PF04130_consen 284 ----------------------------PLDQDKLESKIESQYKLVNKSLLDLLFEDYNLLEHLKALRDFFLLGDGDFAD 335 (542)
T ss_dssp ----------------------------S--HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHTT---HHHHH
T ss_pred ----------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCcHHHH
Confidence 0013357778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHHhccccCcCCCCCCceE-EEEeccCCCCCCCCcccccccCCCCCCCCCCCC
Q 001844 683 HFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALE-VLITESHGSNSDEQPSMANLASTPRKSHPHSFG 761 (1006)
Q Consensus 683 ~f~~~lf~~L~~~~~~~~~~~L~~lLq~Al~~ss~~~~~~~pd~L~-~~i~~~~~~d~de~~~~~~~~~~~R~~~~~~~~ 761 (1006)
.|++.+++.+.++..+.....++..+++++......+....+. .. ...... .. ............+. .....+
T Consensus 336 ~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~~~~~~-~~~~~~ 409 (542)
T PF04130_consen 336 SFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSN-LRSGEISSS--TS--LSSNLSSNDSSSRN-SNNSSS 409 (542)
T ss_dssp HHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGG-EEE---------------------------------
T ss_pred HHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhh-hhhcccccc--cc--chhhhhhhhhhccc-cccccc
Confidence 9999999999999999988999999999988754332110000 00 000000 00 00000000011111 123456
Q ss_pred CccceeEEEEEeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CC--CCCchhhhHHHHHHHH
Q 001844 762 IDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGR---SL--ATNSHSHKRHWLVEQK 836 (1006)
Q Consensus 762 ~~~~d~l~L~Y~vpwPLslIlt~~~m~~Y~~IFrfLl~lKra~~~L~~~w~~l~k~r---~~--~~~~~~~~~~~~LR~~ 836 (1006)
..+|+.+.|+|++||||++|||+++|.+|++||+|||++||+++.|+++|....+.. +. .......++++.+|++
T Consensus 410 ~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 489 (542)
T PF04130_consen 410 LEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQLRRLSRKFGKPDRQSRPQLRRLQILRHR 489 (542)
T ss_dssp --TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG--------S-SHHHHHHHHHHH
T ss_pred ccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999997653211 11 1112347788999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Q 001844 837 LLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCF 889 (1006)
Q Consensus 837 m~~Fv~~L~~Yl~~~VIe~~w~~f~~~L~~a~dldel~~~H~~fL~~I~~~cf 889 (1006)
|+||+++|++|++++||++.|.+|.++|+++.|+|+|+++|++||++|+++||
T Consensus 490 m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~~~~f 542 (542)
T PF04130_consen 490 MQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRILRRCF 542 (542)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999997
No 3
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-57 Score=495.00 Aligned_cols=651 Identities=18% Similarity=0.288 Sum_probs=440.7
Q ss_pred HHHHHHHHhcCCCCccEEEeCCCccEEEccCceeccCChHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhc--------
Q 001844 42 LVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISV---TRVETT-------- 110 (1006)
Q Consensus 42 lvrelL~~L~G~~s~lf~~~~~~~~f~v~~~~~l~~lS~~sl~~lL~~~~~~g~~~~~Lr~fv---~~~~~~-------- 110 (1006)
+++|+|.+|.|.+|..|.|.....-.....++ ....+.+.++++.+++.+|..|+.|.+|. +++.+.
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~~GLa~~~d~--p~FihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~~r~~~~ 78 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARFNGLAETTDI--PQFIHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSSGRKSDT 78 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhccccccccCC--ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccc
Confidence 57999999999999999987522111222222 22335688999999999999997777666 443320
Q ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHhhccCCccccc
Q 001844 111 -----GRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQ 185 (1006)
Q Consensus 111 -----~~~~~~~~qAfa~al~~~L~~y~~~l~~lE~~~~~~~~~~~~sLl~L~~~l~~~~~~~~~L~~l~~~~~~~~~~~ 185 (1006)
....|-...|||.+|...|+.|+..+..+|..... +...+|..++..|...+-+...+..+....-.
T Consensus 79 s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg---~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~----- 150 (679)
T KOG2065|consen 79 SGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLG---NERNSLSYVYNALYAFFPLFPFMRNVITEIHV----- 150 (679)
T ss_pred cccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhhhhHHHHHHHHHHHh-----
Confidence 01257789999999999999999999999999994 46778888887777665555555555443211
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCccceEEEccCCCC
Q 001844 186 FNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISV 265 (1006)
Q Consensus 186 ~~~~~~~~~~~~~lLs~Ly~~~~~~~~~~~gd~~~~~~l~~L~~~~~~PYl~~l~~Wi~~G~L~D~~~EFFI~~~~~~~~ 265 (1006)
...+|+++|..||+. +| |-|+++.-+..++..+-...+..+..||.+|.|.|+..||||+..+...+
T Consensus 151 ------~~irGcqlL~~l~k~---HC----g~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~ 217 (679)
T KOG2065|consen 151 ------LNIRGCQLLHNLHKQ---HC----GHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAV 217 (679)
T ss_pred ------cccchhHHHHHHHHh---cc----CCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCCC
Confidence 125899999999954 46 67889999999999999999999999999999999999999997665433
Q ss_pred CcccccccceEEeecccccccccccccccccccccchhhhhhccccccccccccccCCCCCCcccHHHHHHHH---HhhH
Q 001844 266 DKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSII---SAGK 342 (1006)
Q Consensus 266 ~~~~~W~~~y~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~Fl~~~a~~Il---~aGK 342 (1006)
+. ||+ -....+++. .|||
T Consensus 218 d~----------------------ss~-------------------------------------~ee~~e~L~vhsLTgi 238 (679)
T KOG2065|consen 218 DG----------------------SSF-------------------------------------SEEATESLLVHSLTGI 238 (679)
T ss_pred Cc----------------------ccC-------------------------------------chhhhhhhhhcccchh
Confidence 21 111 111222222 3354
Q ss_pred HHHHHHhhCCCCCchhhhhccCCCCCCCCccccccccccccchhHHHHHhhhcccCCCCccccccccCCCCCccccCCCc
Q 001844 343 SLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLP 422 (1006)
Q Consensus 343 sl~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 422 (1006)
++.-|.-+.-... .|++. + + .+-+|.
T Consensus 239 ~l~~l~D~rl~~E------~nm~a-----------------------------~-------~------------~~~sl~ 264 (679)
T KOG2065|consen 239 ALKNLEDYRLQYE------VNMSA-----------------------------L-------P------------GFFSLV 264 (679)
T ss_pred hhhchhhhhHHHH------Hhhhc-----------------------------c-------c------------cceeee
Confidence 4443332211100 00000 0 0 000000
Q ss_pred cccccccccCCCcccccccccchhhHHHHHHhhhhhccccccccCCcccCCCCccccccchhhhhcccccccccCCCCCc
Q 001844 423 SYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPV 502 (1006)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1006)
+ +|+ ++ + ++ ..+.
T Consensus 265 ---~----------------~s~---------~l-~-----------------------v~---------------~~~s 277 (679)
T KOG2065|consen 265 ---L----------------ASK---------VL-F-----------------------VG---------------QTVS 277 (679)
T ss_pred ---c----------------ccc---------ce-e-----------------------ec---------------cchH
Confidence 0 000 00 0 00 0000
Q ss_pred ccccccccccccccchhhhhhcccccCCCCCChHHHHHHHhccccCCcccccCCCcccccccCccchhhccchhhhhccc
Q 001844 503 ISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVL 582 (1006)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1006)
+ +..-|.- +.-.|..+
T Consensus 278 --~----------------~~~~R~~----------~~i~F~~~------------------------------------ 293 (679)
T KOG2065|consen 278 --V----------------FKMGRNV----------KVINFKTD------------------------------------ 293 (679)
T ss_pred --H----------------Hhhccce----------eeeeccCC------------------------------------
Confidence 0 0000000 00111111
Q ss_pred CCCCccccccccccccccccccccCCCCcccchhhccccCCCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccH
Q 001844 583 FPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRL 662 (1006)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~s~lp~~~l~~~l~~~I~~qy~~~n~~Ll~lL~~~~~L 662 (1006)
|++........+++..+++|-++ +++.+.+-.. +..++..+. .+...|..--..|..+|+++..++-+|
T Consensus 294 -~~~~~e~eld~dlt~G~ll~~~E-d~f~aml~dL------k~~~~f~~~---~fE~vVd~ir~~va~hLw~l~V~e~DL 362 (679)
T KOG2065|consen 294 -PLAAKEAELDSDLTYGQLLSGRE-DEFFAMLVDL------KNEDTFNVF---RFEKVVDDIRNYVAAHLWELAVNEVDL 362 (679)
T ss_pred -chhhHHhhccccchhhhhcCCCh-HHHHHHHHhh------hcCCceeee---eHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 11100011011112223333222 3333322111 111211111 344566666678999999999999999
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhccccCcCCCC--CCceEEEEeccCCCCCC
Q 001844 663 MDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSA--PDALEVLITESHGSNSD 740 (1006)
Q Consensus 663 ~~hL~aLr~~fLLg~GDF~~~f~~~lf~~L~~~~~~~~~~~L~~lLq~Al~~ss~~~~~~~--pd~L~~~i~~~~~~d~d 740 (1006)
..||+++|+|||+|+|||+..|++.+...|..+........++..+|.|....... .| -+.+.+.+... |....
T Consensus 363 ~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~tE~dv~v~FqlaAtkt~~~---dDkyl~~~sL~~~~~-grs~~ 438 (679)
T KOG2065|consen 363 EGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERTEKDVTVSFQLAATKTGIT---DDKYLDKFSLICQRS-GRSEP 438 (679)
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhcccccchhhhhhhhhcccc---ccccccceEEEeccc-CCCCc
Confidence 99999999999999999999999999999999877666778888888776544211 11 12333333222 21111
Q ss_pred CCcccccccCCCCCCCCCCCCCccceeEEEEEeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccC
Q 001844 741 EQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRW-MWKGRS 819 (1006)
Q Consensus 741 e~~~~~~~~~~~R~~~~~~~~~~~~d~l~L~Y~vpwPLslIlt~~~m~~Y~~IFrfLl~lKra~~~L~~~w~~-l~k~r~ 819 (1006)
.+...+ +...++ .....+.+|||++.|.|+|.|||+++|||.++++||.||+||+++||.++.|+++|.. ||+...
T Consensus 439 aD~~~~-~tGka~--ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~ 515 (679)
T KOG2065|consen 439 ADTSDF-NTGKAF--LTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHS 515 (679)
T ss_pred cchhhh-ccCccc--ccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 001111 1123457899999999999999999999999999999999999999999999999965 676432
Q ss_pred C-C--CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 001844 820 L-A--TNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLW 896 (1006)
Q Consensus 820 ~-~--~~~~~~~~~~~LR~~m~~Fv~~L~~Yl~~~VIe~~w~~f~~~L~~a~dldel~~~H~~fL~~I~~~cfL~~~~~~ 896 (1006)
. + +..+.++ |++|+.|.+|+++||+|++.||+|++|..++..+++..|++.+..+|..||.+++.+|||..+
T Consensus 516 ~s~q~~d~~~I~--WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~--- 590 (679)
T KOG2065|consen 516 ASDQPPDNKIIT--WRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNE--- 590 (679)
T ss_pred hccCCCCCccch--HHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 1 1 1122222 999999999999999999999999999999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHhcc
Q 001844 897 ALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINY 976 (1006)
Q Consensus 897 ~~i~~~i~~il~l~l~F~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~F~~~~~~Li~vL~~~~~~~~~~~L~~Ll~RLDf 976 (1006)
||..++.+|+++|.+||+++..-... .++.+++++.+.+.|.++...|+++|.........+.|++||+||||
T Consensus 591 -pV~~~L~~i~~lC~~Fcn~~~Q~~~P------~d~~~~el~~l~e~F~~qs~sL~~iL~svk~~q~~~~L~qlLLRLdf 663 (679)
T KOG2065|consen 591 -PVYGTLLKIFGLCEKFCNHMTQTKDP------SDDLEDELDQLNESFGVQSASLIQILVSVKSAQCLGPLSQLLLRLDF 663 (679)
T ss_pred -cHHHHHHHHHHHHHHHHHHhhccCCC------cccchHHHHHHHHHhhhhHHHHHHHHHHccccccccHHHHHHHHhch
Confidence 78999999999999999877532211 12446789999999999999999999887777788999999999999
Q ss_pred CcccccCCCCccc
Q 001844 977 NYFYMSDSGNLMT 989 (1006)
Q Consensus 977 N~fY~~~~~~l~~ 989 (1006)
|.||+.+.|.+.+
T Consensus 664 N~~y~aArG~ln~ 676 (679)
T KOG2065|consen 664 NCWYSAARGSLNT 676 (679)
T ss_pred hHHHHhccccccc
Confidence 9999999999885
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=4.5e-50 Score=481.03 Aligned_cols=539 Identities=23% Similarity=0.331 Sum_probs=428.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCccEEEeCCCccEEEccCceeccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCC
Q 001844 36 RTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTG-RIS 114 (1006)
Q Consensus 36 ~i~E~~lvrelL~~L~G~~s~lf~~~~~~~~f~v~~~~~l~~lS~~sl~~lL~~~~~~g~~~~~Lr~fv~~~~~~~-~~~ 114 (1006)
.++|.++|++++|+|+|+.+.+|.++.....+.+... +. ++.....++..+.++|+++.++..|+....... -..
T Consensus 201 ~i~e~~lvk~v~yvl~gv~~~~~~~~~~~~~~~~k~~--~~--~~~~~~~l~~~lSelg~l~~~~~~~~~~~~l~~~~~~ 276 (879)
T KOG2000|consen 201 LIKEEDLVKDVLYVLQGVDGALFSFDSELECFVVKGP--VH--LPRGISGLLYLLSELGVLYQRVSTFSDQLVLDNPYCI 276 (879)
T ss_pred cchHHHHHHHHHHHHhhhhhceeecccHHhhhhhhcc--cc--chhhHHHHHHHHHHHhHHHHhhhhhcchhhhhhhhhh
Confidence 4889999999999999999999999988888877655 22 688999999999999999999999998854321 136
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CCCccHHHHHHHHHhhhhhHHHHHHHhhccCCcccccCC
Q 001844 115 SPTLRAFSSAVSAWLKMFRGIALKEEMKITESNV-------GNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFN 187 (1006)
Q Consensus 115 ~~~~qAfa~al~~~L~~y~~~l~~lE~~~~~~~~-------~~~~sLl~L~~~l~~~~~~~~~L~~l~~~~~~~~~~~~~ 187 (1006)
|++.|||+.++++.|++|+..+..+..+...... ...++|+.++.++.....+++++..++..+..
T Consensus 277 g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~~------- 349 (879)
T KOG2000|consen 277 GLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQV------- 349 (879)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhcc-------
Confidence 8999999999999999999999988777742111 12257888888888888888888888765432
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCccceEEEccCC-CCC
Q 001844 188 MPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAI-SVD 266 (1006)
Q Consensus 188 ~~~~~~~~~~~lLs~Ly~~~~~~~~~~~gd~~~~~~l~~L~~~~~~PYl~~l~~Wi~~G~L~D~~~EFFI~~~~~~-~~~ 266 (1006)
..|+.++..++... .+|++.++.+...+|...|.||.+|+..||..|.+.|.++||||..+... .+.
T Consensus 350 ------~~g~~l~~~~~~f~------~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFfV~~~~~~~~~~ 417 (879)
T KOG2000|consen 350 ------PKGGKLLSAVHEFL------THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFFVAENPDPGSVK 417 (879)
T ss_pred ------cCCCcchHHHHHHH------HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceEEeccCCCCccc
Confidence 34555777777544 47999999999999999999999999999999999999999999998873 466
Q ss_pred cccccccceEEeecccccccccccccccccccccchhhhhhccccccccccccccCCCCCCccc-HHHHHHHHHhhHHHH
Q 001844 267 KAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFI-KDIAKSIISAGKSLQ 345 (1006)
Q Consensus 267 ~~~~W~~~y~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~Fl-~~~a~~Il~aGKsl~ 345 (1006)
++.+|+++|.++. .++|.|+ .++|.+||.+||+++
T Consensus 418 ~d~lw~~~~~l~~--------------------------------------------~~lP~Fi~~~~a~kI~l~GKsin 453 (879)
T KOG2000|consen 418 DDRLWHDGYKLRY--------------------------------------------EMLPSFIPMELAQKILLIGKSIN 453 (879)
T ss_pred cccccccccccch--------------------------------------------hhcccccCHHHHHHHHHhhhHHH
Confidence 7889999999985 3799999 569999999999999
Q ss_pred HHHhhCCCCCchhhhhccCCCCCCCCccccccccccccchhHHHHHhhhcccCCCCccccccccCCCCCccccCCCcccc
Q 001844 346 LIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYM 425 (1006)
Q Consensus 346 lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 425 (1006)
+|+.+|++.. |. + +...+ |
T Consensus 454 fL~~~c~e~~-----w~---~----------------------------------e~~~~------~------------- 472 (879)
T KOG2000|consen 454 FLRDCCNEQT-----WS---D----------------------------------EIDAK------A------------- 472 (879)
T ss_pred HHHHhccccc-----cc---c----------------------------------chhHH------H-------------
Confidence 9999997543 21 0 00000 0
Q ss_pred ccccccCCCcccccccccchhhHHHHHHhhhhhccccccccCCcccCCCCccccccchhhhhcccccccccCCCCCcccc
Q 001844 426 NDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISV 505 (1006)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1006)
+ ++
T Consensus 473 ------~-----------~~------------------------------------------------------------ 475 (879)
T KOG2000|consen 473 ------S-----------VE------------------------------------------------------------ 475 (879)
T ss_pred ------H-----------Hh------------------------------------------------------------
Confidence 0 00
Q ss_pred cccccccccccchhhhhhcccccCCCCCChHHHHHHHhccccCCcccccCCCcccccccCccchhhccchhhhhcccCCC
Q 001844 506 CDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPF 585 (1006)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1006)
+| . ++ .++...
T Consensus 476 ------------------~s----~---~~-----~l~~~~--------------------------------------- 486 (879)
T KOG2000|consen 476 ------------------ES----S---TR-----DLEYAS--------------------------------------- 486 (879)
T ss_pred ------------------hh----h---hh-----hhccCC---------------------------------------
Confidence 00 0 00 000000
Q ss_pred CccccccccccccccccccccCCCCcccchhhccccCCCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccHHHH
Q 001844 586 PTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDE 665 (1006)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~s~lp~~~l~~~l~~~I~~qy~~~n~~Ll~lL~~~~~L~~h 665 (1006)
...+...++++|....+++.++|.+.+++.+|
T Consensus 487 ------------------------------------------------~~~l~~~v~~ay~e~inhl~~ll~~~~~l~dh 518 (879)
T KOG2000|consen 487 ------------------------------------------------DVGLLGSVSEAYSEIVNHLNDILEEVISLLDH 518 (879)
T ss_pred ------------------------------------------------ChhHHHHHhhhhccchHHHHHHHHHHhhHHHH
Confidence 00245577888999999999999999999999
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhcc-ccCcCCCCCCceEEEEeccCCCCCCCCcc
Q 001844 666 LAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNS-ADGKLLSAPDALEVLITESHGSNSDEQPS 744 (1006)
Q Consensus 666 L~aLr~~fLLg~GDF~~~f~~~lf~~L~~~~~~~~~~~L~~lLq~Al~~s-s~~~~~~~pd~L~~~i~~~~~~d~de~~~ 744 (1006)
+.++|+|.|+|+|||++.+|+.+-+.+..+.....++.|+.++++|+|.+ +++ +.+++.+
T Consensus 519 ~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt~~ldsaiR~s~na~--yd~~~vL----------------- 579 (879)
T KOG2000|consen 519 NQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLTGVLDSAVRSSLNAQ--YDDRDVL----------------- 579 (879)
T ss_pred HHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHHHHHHHHHhhhhccc--cCChhhh-----------------
Confidence 99999999999999999999999999999999999999999999999988 433 2333211
Q ss_pred cccccCCCCCCCCCCCCCccceeEEEEEeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc-c--CC
Q 001844 745 MANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL-DKARRWMWKG-R--SL 820 (1006)
Q Consensus 745 ~~~~~~~~R~~~~~~~~~~~~d~l~L~Y~vpwPLslIlt~~~m~~Y~~IFrfLl~lKra~~~L-~~~w~~l~k~-r--~~ 820 (1006)
.+++.|.. ....+..+||.++++|.+.-|+++|+|+.++.+|-+||+|||++||+++.| .+.|+.+.+. + ..
T Consensus 580 ---~Rld~~~~-~~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~~~~~ 655 (879)
T KOG2000|consen 580 ---NRLDVRVL-KLSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCNVAKR 655 (879)
T ss_pred ---hhhhhHhh-hccCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 12223221 235688999999999999999999999999999999999999999999999 6777653310 1 11
Q ss_pred CCC------chhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhcCCCc
Q 001844 821 ATN------SHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGS-LDEVIEVHEAYLLSIQRQCFVAPD 893 (1006)
Q Consensus 821 ~~~------~~~~~~~~~LR~~m~~Fv~~L~~Yl~~~VIe~~w~~f~~~L~~a~d-ldel~~~H~~fL~~I~~~cfL~~~ 893 (1006)
... .....++..+..+|.||+.++|+|+..+|||.+|+.|..+++.+.+ +|..+++|+-|++.|.-.|+|.++
T Consensus 656 ~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~ld~~~eah~~~~~ti~i~~~l~~~ 735 (879)
T KOG2000|consen 656 DRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPLDFQLEAHRPFLDTISIRGILQEK 735 (879)
T ss_pred chhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCchHHHHhhccccccceeecccccCc
Confidence 110 1134567788999999999999999999999999999999999999 999999999999999999999874
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001844 894 KLWALIASRINSILGLALEFYSIQQT 919 (1006)
Q Consensus 894 ~~~~~i~~~i~~il~l~l~F~~~~~~ 919 (1006)
.-...+...+..++..++.+......
T Consensus 736 ~~~~s~~~~l~~l~e~Il~~~~~~~~ 761 (879)
T KOG2000|consen 736 ASVESIEHSLSALLELILNLAELQSS 761 (879)
T ss_pred ccchhhHHhHHHHHHHHhhhhccccc
Confidence 21114677888888888888765443
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.5e-39 Score=357.53 Aligned_cols=752 Identities=19% Similarity=0.205 Sum_probs=500.9
Q ss_pred ccccCCCCCccCCHHHHHHHHHHHhcCCCCccEEEeCCCccEEEccCceeccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001844 26 IHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVT 105 (1006)
Q Consensus 26 ~~~~~~~~~~~i~E~~lvrelL~~L~G~~s~lf~~~~~~~~f~v~~~~~l~~lS~~sl~~lL~~~~~~g~~~~~Lr~fv~ 105 (1006)
.++-.|-+...|||...+++-+|.+.|++.-+++. ...+.-.....+-+.|+.....+..++.+.-+|....+|..|++
T Consensus 279 dlLqlPddrvlvtepprifeqlWllggtdkLFifi-hidgkcqdrhlialphlahpcdnfaleqiaalghnafgLlafid 357 (1121)
T KOG4344|consen 279 DLLQLPDDRVLVTEPPRIFEQLWLLGGTDKLFIFI-HIDGKCQDRHLIALPHLAHPCDNFALEQIAALGHNAFGLLAFID 357 (1121)
T ss_pred CcccCCCcccccCCCCcHHHHHHHhcCCceEEEEE-eecceeeeeeeeeccccccchHHHHHHHHHHhhhhHHHHHhccc
Confidence 33455666677999999999999999998777653 33334455566788999999999999999999999999999999
Q ss_pred hhhhcCC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHhhhhh--
Q 001844 106 RVETTGR----------------ISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSG-- 167 (1006)
Q Consensus 106 ~~~~~~~----------------~~~~~~qAfa~al~~~L~~y~~~l~~lE~~~~~~~~~~~~sLl~L~~~l~~~~~~-- 167 (1006)
.+....| ..-.+.+||..++-+..-.|...++.++.-+. +...+++|..+...|.+..++
T Consensus 358 ekmghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcia--nndqnflLadVVdaLadmlelrh 435 (1121)
T KOG4344|consen 358 EKMGHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIA--NNDQNFLLADVVDALADMLELRH 435 (1121)
T ss_pred hhccCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhh--cCCceeeHHHHHHHHHHHHhhHH
Confidence 8764221 12368899999999999999999999988777 345778888888888776544
Q ss_pred HHHHHHHhhccCCcccccCC-CCCCCc----cchhhHHHHHHHHHHHHhhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001844 168 GEYLLQIVDGAIPQVCFQFN-MPVPAA----QVAVHILDYLYKKLDEVCLVQGGEVEE-YQMLLHIFVGSLLPYIEGLDS 241 (1006)
Q Consensus 168 ~~~L~~l~~~~~~~~~~~~~-~~~~~~----~~~~~lLs~Ly~~~~~~~~~~~gd~~~-~~~l~~L~~~~~~PYl~~l~~ 241 (1006)
+..+..+.. .| +.+|+. -....||+-+|+.+..|......++.. .-++..|+.+...||++.+++
T Consensus 436 iidlHklff---------hGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldE 506 (1121)
T KOG4344|consen 436 IIDLHKLFF---------HGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDE 506 (1121)
T ss_pred HHHHHHHhh---------cccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHH
Confidence 333333321 12 123332 356789999999998876555555443 345678899999999999999
Q ss_pred HHcccccCCCCccceEEEccCCCCCcccccccceEEeecccccccccccccccccccccchhhhhh-cccccc---cccc
Q 001844 242 WLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQ-NGLRES---ISLS 317 (1006)
Q Consensus 242 Wi~~G~L~D~~~EFFI~~~~~~~~~~~~~W~~~y~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~ 317 (1006)
|+.+|.|.|...||.|.++...-+...+||...|..-.+ +-.++|+++- +.++.+ .+++
T Consensus 507 laedghLddGaaefiiarlknrlvkHrdfqyaphqklat-----------------aekfeneekmcdiadassgraage 569 (1121)
T KOG4344|consen 507 LAEDGHLDDGAAEFIIARLKNRLVKHRDFQYAPHQKLAT-----------------AEKFENEEKMCDIADASSGRAAGE 569 (1121)
T ss_pred HHHhccccccHHHHHHHHHhccccccchhhhccHHHHHH-----------------HHHhhhHHHHhhhhccccccccCh
Confidence 999999999999999999998888899999666554432 1233443322 123322 2222
Q ss_pred ccccCCCCCCcccHHHHHHHHHhhHHHHHHHhhCCCCCchhhhhccCCCCCCCCccccccccccccchhHHHHHhhhccc
Q 001844 318 SSVKGLQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLI 397 (1006)
Q Consensus 318 ~~~~~~~~vP~Fl~~~a~~Il~aGKsl~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (1006)
.... ..+-+|.++.-..|..+||+.++|..+.-...+ .-...-|+ .....+||.+|.++.+...
T Consensus 570 dhlq--efiVeFckeedaniimagkrkqllgnlqcaEdd--KOGaeafd------------aeqscpLYqLfLEhalerg 633 (1121)
T KOG4344|consen 570 DHLQ--EFIVEFCKEEDANIIMAGKRKQLLGNLQCAEDD--LCLAEAFD------------AEQSCPLYQLFLEHALERG 633 (1121)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhhhHHHhhccccccchh--hHHHHhhh------------hhhcCcHHHHHHHHHHHhc
Confidence 2222 235568888889999999999999865432220 00001111 1222569999999998777
Q ss_pred CCCCccccccccCCCCCccccCCCccccccc-cccCCCcccccccccchhhHHHHHHhhhhhccccccccCCcccCCCCc
Q 001844 398 GHGDHIFRYFWQDDSCESEFIPSLPSYMNDQ-MTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPN 476 (1006)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 476 (1006)
+|+|..+.. ..|. +. ++.+.+ .++ +
T Consensus 634 ehgddlcsp------------ntLs----EmlqankEi--qLm------k------------------------------ 659 (1121)
T KOG4344|consen 634 EHGDDLCSP------------NTLS----EMLQANKEI--QLM------K------------------------------ 659 (1121)
T ss_pred cccccccCH------------HHHH----HHHhhcccc--chh------h------------------------------
Confidence 777653210 0010 00 000000 000 0
Q ss_pred cccccchhhhhcccccccccCCCCCcccccccccccccccchhhhhhcccccCCCCCChHHHHHHHhccccCCcccccCC
Q 001844 477 MKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGT 556 (1006)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1006)
+.+.+|-.-+ ...+..++..+.+|++-| ..+..+++ .|.. .
T Consensus 660 -----lhdeaeshff-------------------alddVhcgadaidfadep----eedkDfed-kfac----------g 700 (1121)
T KOG4344|consen 660 -----LHDEAESHFF-------------------ALDDVHCGADAIDFADEP----EEDKDFED-KFAC----------G 700 (1121)
T ss_pred -----HHHHHHHhHH-------------------HHhhccCcccccchhhCC----CccccHHH-hhcc----------c
Confidence 0111110000 000111111223333222 11111110 1110 0
Q ss_pred CcccccccCccchhhccchhhhhcccCCCCccccccccccccccccccccCCCCcccchhhccccCCCCCCchHHHHHHh
Q 001844 557 NYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQEC 636 (1006)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~s~lp~~~l~~~ 636 (1006)
+ -+++++. .-+.--+.-+.+|.|
T Consensus 701 d----vcvdrsq-----------------------------------------------------eirncelFaiflqpc 723 (1121)
T KOG4344|consen 701 D----VCVDRSQ-----------------------------------------------------EIRNCELFAIFLQPC 723 (1121)
T ss_pred c----ccccccc-----------------------------------------------------cceehhhHHHHhhhh
Confidence 0 0011100 000011122566889
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHccCCcchHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhc
Q 001844 637 LTVYIKKQ--VDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRN 714 (1006)
Q Consensus 637 l~~~I~~q--y~~~n~~Ll~lL~~~~~L~~hL~aLr~~fLLg~GDF~~~f~~~lf~~L~~~~~~~~~~~L~~lLq~Al~~ 714 (1006)
+.+.|++| |-.++..||.-+.+++.+.+.|++.+.||++..||.+..|.-+.+..+....+|.+...++..|++|+.-
T Consensus 724 lephidkQrerLdccgnLManikKdlelsecLQakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamgl 803 (1121)
T KOG4344|consen 724 LEPHIDKQRERLDCCGNLMANIKKDLELSECLQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGL 803 (1121)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhh
Confidence 99999999 7778999999999999999999999999999999999999999999999888999999999999999863
Q ss_pred cccCcC-CCCCCceEEEEeccCCCCCCCCccc----------------c---cccCCCCCCCCCCCCCccceeEEEEEe-
Q 001844 715 SADGKL-LSAPDALEVLITESHGSNSDEQPSM----------------A---NLASTPRKSHPHSFGIDGLDLLKFTYK- 773 (1006)
Q Consensus 715 ss~~~~-~~~pd~L~~~i~~~~~~d~de~~~~----------------~---~~~~~~R~~~~~~~~~~~~d~l~L~Y~- 773 (1006)
. .... ..+...|.+++...-. .....++. + +..+........-....++|.+.|+|+
T Consensus 804 e-krYlfvedsnaLfirfEnvdn-akkaLgsvltsklcavllphypqlahylhvklisqinsnsikvveaLdaieLdfer 881 (1121)
T KOG4344|consen 804 E-KRYLFVEDSNALFIRFENVDN-AKKALGSVLTSKLCAVLLPHYPQLAHYLHVKLISQINSNSIKVVEALDAIELDFER 881 (1121)
T ss_pred h-hcccccccccceeEEeecccc-hhhhcchhhhhhhhhhhcccchhhhhHHHHHHHhhhcccchhhhhhhhheeecccC
Confidence 2 1111 1233456665542100 00001110 0 000111100011223678999999999
Q ss_pred -eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----Hhcc---C----------CCC----CchhhhHH
Q 001844 774 -VSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARR-WM----WKGR---S----------LAT----NSHSHKRH 830 (1006)
Q Consensus 774 -vpwPLslIlt~~~m~~Y~~IFrfLl~lKra~~~L~~~w~-~l----~k~r---~----------~~~----~~~~~~~~ 830 (1006)
+|||..+||++.+|+.||.+|++|+++|+|.|.|+++-+ .+ .+.| + ... ....++++
T Consensus 882 pmamhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRl 961 (1121)
T KOG4344|consen 882 PMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRL 961 (1121)
T ss_pred CcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHH
Confidence 899999999999999999999999999999999998532 11 1111 1 000 12357889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHH
Q 001844 831 WLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLA 910 (1006)
Q Consensus 831 ~~LR~~m~~Fv~~L~~Yl~~~VIe~~w~~f~~~L~~a~dldel~~~H~~fL~~I~~~cfL~~~~~~~~i~~~i~~il~l~ 910 (1006)
..+|.+++||||+|+.|++..|+++...+|+.++..|+|+|+++.+|.+||..|..+|+|+++ .+.+..+|.+||.++
T Consensus 962 eilRfkLiffiNnLHahIMeailhStgleFehqieEaKdldeLiiiHdehLatihdhClLrde--fkafkeAidkifhLa 1039 (1121)
T KOG4344|consen 962 EILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDEHLATIHDHCLLRDE--FKAFKEAIDKIFHLA 1039 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 578899999999999
Q ss_pred HHHHHHHHhhhc----CCc----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHhccC
Q 001844 911 LEFYSIQQTLSS----SGA----VSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYN 977 (1006)
Q Consensus 911 l~F~~~~~~~~~----~~~----~~~~~~~~~~~v~~l~~~F~~~~~~Li~vL~~~~~~~~~~~L~~Ll~RLDfN 977 (1006)
+.|+.-++...+ +.. ++-.++.. +.-+.-+..|+.+..+++..++..+.++.++++.-|.+-|--|
T Consensus 1040 lmfadeWqtcascmhagdaKOGdesIeddei-DdsetqrrsfencalflVaeiekavcRchfmhadiLalllhag 1113 (1121)
T KOG4344|consen 1040 LMFADEWQTCASCMHAGDALCLDESIEDDEI-DDSETQRRSFENCALFLVAEIEKAVCRCHFMHADILALLLHAG 1113 (1121)
T ss_pred HHHhcccchhhhhhccccchhhhhhhhcccc-cchHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhcC
Confidence 999887764332 110 00000000 0112335669999999999998877788888888777665444
No 6
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.0066 Score=70.92 Aligned_cols=210 Identities=12% Similarity=0.042 Sum_probs=129.8
Q ss_pred CccCCHHHHHHHHHHHhcCCCCccEE-EeCCCccEEEccCc-------eeccCChH-----HHHHHHHHHHHHHHHHHHH
Q 001844 34 SSRTNEVDLVRGVLQMLQGLSSSLFY-WDESVRSFCVKTGI-------YVTHLSLK-----SVHVVLNQFIYAATCLKLV 100 (1006)
Q Consensus 34 ~~~i~E~~lvrelL~~L~G~~s~lf~-~~~~~~~f~v~~~~-------~l~~lS~~-----sl~~lL~~~~~~g~~~~~L 100 (1006)
+++.+|.+++++.++|+---.|+.|+ ++.......++..+ .|+....+ .+..++..+.+.-. +
T Consensus 358 ekmghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnflLadVVdaLadmle----l 433 (1121)
T KOG4344|consen 358 EKMGHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNFLLADVVDALADMLE----L 433 (1121)
T ss_pred hhccCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCceeeHHHHHHHHHHHHh----h
Confidence 45699999999999999999888865 44332222333322 11111111 22233333322221 2
Q ss_pred HHHHHhhh--hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHhhcc
Q 001844 101 EISVTRVE--TTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGA 178 (1006)
Q Consensus 101 r~fv~~~~--~~~~~~~~~~qAfa~al~~~L~~y~~~l~~lE~~~~~~~~~~~~sLl~L~~~l~~~~~~~~~L~~l~~~~ 178 (1006)
|..++... ..+-..+|+..-|+-+.+..|+...+.|...+......+ .+.|++....+++..+..++.|..++..-
T Consensus 434 rhiidlHklffhGVaetppdeffavgardLlnpickaiiaYddrgeade--akntlilFsiefeehfpqLqlldElaedg 511 (1121)
T KOG4344|consen 434 RHIIDLHKLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADE--AKNTLILFSIEFEEHFPQLQLLDELAEDG 511 (1121)
T ss_pred HHHHHHHHHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCc--ccceEEEEEEehhhhhHHHHHHHHHHHhc
Confidence 22222211 111134677788999999999999999988776655322 23344433344555556666666665433
Q ss_pred CCcccccCCCCCCCccchhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCccceEE
Q 001844 179 IPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFY 258 (1006)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~lLs~Ly~~~~~~~~~~~gd~~~~~~l~~L~~~~~~PYl~~l~~Wi~~G~L~D~~~EFFI~ 258 (1006)
... .| +..-...++++.+|++.+- + ......+.........+-|+.+++.|.++....|..+||+|.
T Consensus 512 hLd----dG---aaefiiarlknrlvkHrdf----q--yaphqklataekfeneekmcdiadassgraagedhlqefiVe 578 (1121)
T KOG4344|consen 512 HLD----DG---AAEFIIARLKNRLVKHRDF----Q--YAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVE 578 (1121)
T ss_pred ccc----cc---HHHHHHHHHhccccccchh----h--hccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHH
Confidence 221 12 2345678888999965432 2 234677788888899999999999999999999999999986
Q ss_pred EccC
Q 001844 259 ANRA 262 (1006)
Q Consensus 259 ~~~~ 262 (1006)
.-.+
T Consensus 579 Fcke 582 (1121)
T KOG4344|consen 579 FCKE 582 (1121)
T ss_pred HHHH
Confidence 6443
No 7
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=60.61 E-value=5 Score=46.72 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=54.3
Q ss_pred CccCCHHHHHHHHHHHhcCCCCccEEEeCCCccEEEccCceeccCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001844 34 SSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRV 107 (1006)
Q Consensus 34 ~~~i~E~~lvrelL~~L~G~~s~lf~~~~~~~~f~v~~~~~l~~lS~~sl~~lL~~~~~~g~~~~~Lr~fv~~~ 107 (1006)
..+|.|.-+++|++|||.|.+|-+|.-- ...+. +-..+.|++..-++.+|..++..|.-+..+++.....
T Consensus 177 ~~riseqs~~~e~IymL~Gy~~~~f~~v--e~~l~--~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva~~~ 246 (653)
T PF14609_consen 177 VYRISEQSWKYEIIYMLMGYQGHIFTCV--EEILR--HAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVANER 246 (653)
T ss_pred heeecccchHHHHHHHHhcCcchhhhhh--Hhhhc--ccccccchHHHHHHHHHHHhhccccchHHHHHHhCCc
Confidence 3558999999999999999999999621 11222 2237789999999999999999999988887544443
No 8
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=23.06 E-value=2.5e+02 Score=36.35 Aligned_cols=118 Identities=11% Similarity=-0.060 Sum_probs=87.1
Q ss_pred CccceeEEEEEeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCCCCchhhhHHHHHHHHH
Q 001844 762 IDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWM----WKGRSLATNSHSHKRHWLVEQKL 837 (1006)
Q Consensus 762 ~~~~d~l~L~Y~vpwPLslIlt~~~m~~Y~~IFrfLl~lKra~~~L~~~w~~l----~k~r~~~~~~~~~~~~~~LR~~m 837 (1006)
..++|.-...|++..++.-.++.-.- ..+|.++|++.+-.|.+.+.|+.+ |+......+ ..-..|..|
T Consensus 589 ~~~gd~gwdvfsl~y~v~~p~s~v~t---~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~-----~~~~~~~~~ 660 (879)
T KOG2000|consen 589 LSHGDDGWDVFSLDYAVDGPLSLVLT---RELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCN-----VAKRDRLLK 660 (879)
T ss_pred ccCCcccceeeeecceecccHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----ccccchhcc
Confidence 56678889999999999988877332 899999999999999999999765 221111111 133567789
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcC
Q 001844 838 LHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFV 890 (1006)
Q Consensus 838 ~~Fv~~L~~Yl~~~VIe~~w~~f~~~L~~a~dldel~~~H~~fL~~I~~~cfL 890 (1006)
.|++.....++...+.|-+|. ..+++--..++ ++++|-.++...+..-..
T Consensus 661 i~~~~~~~~r~h~~~~E~~~f--~sq~q~y~~f~-vie~~wk~l~~~~~~a~~ 710 (879)
T KOG2000|consen 661 IPEISCALHRCHILTNEMNHF--ISQMQYYILFE-VIECSWKELSKKMEPARN 710 (879)
T ss_pred hHHHHhhhhhhhhHHHHHHHH--HHhhhhccccc-hhhcChHHHHHHHhhccC
Confidence 999999999988777765553 44444444444 999999999988877665
No 9
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=20.75 E-value=6.9e+02 Score=23.28 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=50.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHH
Q 001844 84 HVVLNQFIYA----ATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLAS 159 (1006)
Q Consensus 84 ~~lL~~~~~~----g~~~~~Lr~fv~~~~~~~~~~~~~~qAfa~al~~~L~~y~~~l~~lE~~~~~~~~~~~~sLl~L~~ 159 (1006)
+++|..|..+ +..|.+++.=...+..+. ..+..++++..|..........|..+|..+.. ......+..+..
T Consensus 2 ~~Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~--~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~--~~~~~~la~~i~ 77 (97)
T PF14966_consen 2 RELLRRFFALQERRAQLYNRFEEGFKKYLRSG--PEEAYRQLCHEITQEFSAISKEILAIEAELRD--EHERPDLAELIR 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCHHHHHHHH
Confidence 4667777644 677777776555554332 34888888888888888889999999998873 112334455555
Q ss_pred HHHh
Q 001844 160 SLSS 163 (1006)
Q Consensus 160 ~l~~ 163 (1006)
.|+.
T Consensus 78 ~lQ~ 81 (97)
T PF14966_consen 78 ELQE 81 (97)
T ss_pred HHHH
Confidence 5543
No 10
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=12.06 E-value=1e+03 Score=21.10 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001844 79 SLKSVHVVLNQFIYAATCLKLVEISV-TRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKE 139 (1006)
Q Consensus 79 S~~sl~~lL~~~~~~g~~~~~Lr~fv-~~~~~~~~~~~~~~qAfa~al~~~L~~y~~~l~~l 139 (1006)
.|..|+.+-..+-.++.-+.....-+ ..........|++..+|..++...+..+...+..+
T Consensus 8 dp~~Lr~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 69 (100)
T PF10824_consen 8 DPEALRQAAAQLDDIADQLAAAASAVAGASAAVAAAFGPIGAAFAAALAEALEARQAALEQL 69 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcchhccccccccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888877777776655544 11111123468899999999999988887777654
Done!