Query 001844
Match_columns 1006
No_of_seqs 274 out of 789
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:45:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001844.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1140-1144//hhsearch_pdb/001844hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 1.0 1 1 716.3 60.5 611 42-988 1-662 (677)
2 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 18.0 -0.4 13 195-207 332-344 (1330)
3 3t98_B Nucleoporin NUP58/NUP45 1.0 1 1 11.1 5.5 51 114-164 6-56 (93)
4 3gio_A Putative uncharacterize 1.0 1 1 9.3 -0.3 12 667-678 82-93 (186)
5 3pp5_A BRK1, protein brick1; t 1.0 1 1 8.9 3.3 21 120-140 38-58 (73)
6 2wcr_A TNF-alpha inducer prote 1.0 1 1 8.7 0.1 33 221-253 70-102 (159)
7 3omb_A Extracellular solute-bi 1.0 1 1 8.2 5.7 56 828-884 477-533 (535)
8 1ich_A TNF-1, tumor necrosis f 1.0 1 1 7.7 -0.0 47 843-889 14-61 (112)
9 4a64_A Cullin-4B, CUL4B, CUL-4 1.0 1 1 7.7 7.7 122 782-908 229-350 (354)
10 1xod_A Spred1; sprouty, EVH1, 1.0 1 1 7.6 -1.2 24 980-1003 74-97 (118)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=716.25 Aligned_cols=611 Identities=20% Similarity=0.309 Sum_probs=482.2
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CC---
Q ss_conf 999999982399976288718974189706832015896899999999999999999999999755406------99---
Q 001844 42 LVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETT------GR--- 112 (1006)
Q Consensus 42 lvreiL~~L~G~~s~lf~~~~~~~~f~v~~~~~i~~ls~~sl~~lL~~~~~~g~~~~~Lr~fv~~~~~~------~~--- 112 (1006)
||||+|++|+|++|.+|.+++. .+|.+++++ ..++ .++++++++++++|++|++|++|++..... .+
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~~-~~f~v~~~~--~~l~-~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~~~~~~~~~~ 76 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNKR-SGLQVSQDF--PFLH-PSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQ 76 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEETT-TEEECCSCC--TTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----------
T ss_pred CHHHHHHHHCCCCCCCEEECCC-CCEEECCCC--CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9087999975999981675478-762308888--9889-77999999999999999999999996034445754354433
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ----9828999999999999999999999999898313899975589899999854554899999852007753224899
Q 001844 113 ----ISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNM 188 (1006)
Q Consensus 113 ----~~~~~~qAFa~al~~~L~~~~~~l~~lE~~~~~~~~~~~~tLl~L~~~L~~~~~~~~~L~~i~~~~~~~~~~~~~~ 188 (1006)
..|++.||||++|+++|.+|+..++++|.++... ..+||..+...++++..++..|..++.....+
T Consensus 77 ~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~---~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~------- 146 (677)
T 3rip_A 77 GQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGD---PHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQ------- 146 (677)
T ss_dssp --CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC---TTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_conf 46677879999999999999999999999999999649---99859999999888999999999999998618-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCC---
Q ss_conf 99875514439999999998776621898799999999999979999999998870564578776533887467788---
Q 001844 189 PVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISV--- 265 (1006)
Q Consensus 189 ~~~~~~~~~~lLs~Ly~~~~~~~~~~~gd~~~~~ll~~Ll~~~~~PYl~~l~~Wi~~G~L~Dp~~EFfI~~~~~~~~--- 265 (1006)
..+|+.+|+.||..+ .+||+.++.++..|+..|++||+++|..||.+|.|.||++||||+.++....
T Consensus 147 ----~~~G~~lL~~L~~~~------~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~ 216 (677)
T 3rip_A 147 ----KIHGCQILETVYKHS------CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSA 216 (677)
T ss_dssp ----TCCTHHHHHHHHHHH------HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC--------
T ss_pred ----CCCHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHEEEECCCCCCCCC
T ss_conf ----987899999999987------5499899999999999999999999999996874178762003673544344444
Q ss_pred -------------------------------CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf -------------------------------8411111152874122211112244443466531100343202522111
Q 001844 266 -------------------------------DKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESI 314 (1006)
Q Consensus 266 -------------------------------~~~~~W~~~y~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1006)
+...+|..+|+++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~----------------------------------- 261 (677)
T 3rip_A 217 QPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRV----------------------------------- 261 (677)
T ss_dssp ------------------------------------CCCCEEECG-----------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHCCEEECH-----------------------------------
T ss_conf 532111112334566643210333200000023322104634557-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12334569887785409-99999998628999998217999831333216887788876545565434562358999863
Q 001844 315 SLSSSVKGLQACPLFIK-DIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISL 393 (1006)
Q Consensus 315 ~~~~~~~~~~~vP~Fl~-~~a~~Il~aGKsl~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 393 (1006)
.++|+|+. ..|++||.||||+++||+++...+ ..
T Consensus 262 ---------~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~----~~-------------------------------- 296 (677)
T 3rip_A 262 ---------EILPSYIPVRVAEKILFVGESVQMFENQNVNLT----RK-------------------------------- 296 (677)
T ss_dssp ---------GGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC--------------------------------------
T ss_pred ---------HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----CC--------------------------------
T ss_conf ---------657674688999999985178998870688887----53--------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 02457887322223357897766668986532211123788531000133313578888866421032343467865578
Q 001844 394 AGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASN 473 (1006)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1006)
.. .|. - .+..+.+.
T Consensus 297 -------~~--------~~~-------~----------------------~~~~~~~~---------------------- 310 (677)
T 3rip_A 297 -------GS--------ILK-------N----------------------QEDTFAAE---------------------- 310 (677)
T ss_dssp --------C--------TTC-------S----------------------HHHHHHHH----------------------
T ss_pred -------CC--------CCC-------C----------------------HHHHHHHH----------------------
T ss_conf -------34--------455-------3----------------------68999999----------------------
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88610001002220122222456899995432222222355521233310012468999875899997731566875433
Q 001844 474 VPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISEL 553 (1006)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 553 (1006)
+.
T Consensus 311 ----------------------------------------------------------------l~-------------- 312 (677)
T 3rip_A 311 ----------------------------------------------------------------LH-------------- 312 (677)
T ss_dssp ----------------------------------------------------------------HH--------------
T ss_pred ----------------------------------------------------------------HH--------------
T ss_conf ----------------------------------------------------------------99--------------
Q ss_pred CCCCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHH
Q ss_conf 58876666445762010001000110024787866633000000012354344788860000000025898999518999
Q 001844 554 KGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIM 633 (1006)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~w~~~~~~~~s~lp~~~l 633 (1006)
.+.+++.+.
T Consensus 313 ---------------------------~L~~~~~~~-------------------------------------------- 321 (677)
T 3rip_A 313 ---------------------------RLKQQPLFS-------------------------------------------- 321 (677)
T ss_dssp ---------------------------HHHTCSSCC--------------------------------------------
T ss_pred ---------------------------HHHCCCCCC--------------------------------------------
T ss_conf ---------------------------873145677--------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88589999999999999999998120029999999999871589443999999999852079998894889999999986
Q 001844 634 QECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIR 713 (1006)
Q Consensus 634 ~~~l~~~I~~qy~~vn~~Ll~lL~~~~~L~~hL~aLr~~fLl~~GDf~~~F~~~lf~~L~~~~~~~~~~~L~~~Lq~Ai~ 713 (1006)
...+...|++.|..+|+.++++++++++|.+||++||+||||++|||+..|++.++++|+++..|.+...|+.+|+.|++
T Consensus 322 ~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~L~~a~~ 401 (677)
T 3rip_A 322 LVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAH 401 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 78799999999999999999998506579999999999780477729999999999986289752579999999999999
Q ss_pred CCCCCCCCCCC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 01267677898---860788730579999987543345689988899988776410399997615663233498789999
Q 001844 714 NSADGKLLSAP---DALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKY 790 (1006)
Q Consensus 714 ~s~~~~~~~~p---d~L~~~i~~~~~~d~de~~~~~~~~~~~R~~~~~~~~~~~ld~l~L~Y~vpwPLslIit~~~l~~Y 790 (1006)
.+.. .++ +++.+.+.... .+..+.++.. ...... ......+..|||+|+|+|+|||||++|||+.+|.+|
T Consensus 402 ~~~~----~~~~~~~~L~~~i~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y 474 (677)
T 3rip_A 402 KVLL----DDDNLLPLLHLTIEYHG-KEHKDATQAR-EGPSRE-TSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKY 474 (677)
T ss_dssp HTTC----CCTTTGGGEEEEECCCC--------------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHH
T ss_pred HCCC----CCHHHHHCCEEEEECCC-CCCCCCCCCC-CCCCCC-CCCCCCCCCCHHEEEEEEECCCHHHHHCCHHHHHHH
T ss_conf 7467----96556741237764366-4444556665-443322-344567755011278987679708873799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 99999999999999999999999970057777711455799999999999999999997763689899999997228999
Q 001844 791 NQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSL 870 (1006)
Q Consensus 791 ~~IFrfLl~lKra~~~L~~~w~~l~k~r~~~~~~~~~~~~~~LR~~ml~Fv~~L~~Yl~~dVIe~~w~~l~~~L~~a~dl 870 (1006)
++||+|||++||+++.|+++|......+.........++ +.+|++|+|||+++++|++++||+++|.+|+++++++.|+
T Consensus 475 ~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~ 553 (677)
T 3rip_A 475 NVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDF 553 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999999999999999999999999852356887356999-9999999999999999998987999999999734558999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999993158995115999999999999999999999743028850345553189999999999999999
Q 001844 871 DEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVF 950 (1006)
Q Consensus 871 DeLi~~H~~fL~~I~~~clL~~~~~~~~i~~~i~~iL~l~l~F~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~~~~ 950 (1006)
|+|+++|++||++|+++|||+. +++.++|.+||++|++|+.++++.. +. ..+...+++++++++|++++.+
T Consensus 554 d~l~~~H~~~L~~i~~~c~L~~----~~v~~~l~~il~~~~~F~~~~~~~~--~~---~~~~~~~~~~~l~~~F~~~~~~ 624 (677)
T 3rip_A 554 ESIRLAHDHFLSNLLAQSFILL----KPVFHCLNEILDLCHSFCSLVSQNL--GP---LDERGAAQLSILVKGFSRQSSL 624 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999875186----6999999999999999999998630--33---3523589999999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999842206994349999978536864334988854
Q 001844 951 LLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLM 988 (1006)
Q Consensus 951 Li~vL~~~~~~~~~~~L~~Ll~RLDfN~fY~~~~~~~~ 988 (1006)
|+++|++....+..+++.+|++|||||+||++..+.+.
T Consensus 625 L~~~l~~l~~~~~~~~l~~Ll~rLd~N~~y~~~~~~~~ 662 (677)
T 3rip_A 625 LFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGGTLG 662 (677)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCCCCC
T ss_conf 99999988356885389999999385231137999865
No 2
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=18.00 Aligned_cols=13 Identities=0% Similarity=0.304 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 1443999999999
Q 001844 195 VAVHILDYLYKKL 207 (1006)
Q Consensus 195 ~~~~lLs~Ly~~~ 207 (1006)
+...|.+.++...
T Consensus 332 ttt~lv~~~~~~~ 344 (1330)
T 3av4_A 332 TTTKLVYQIFDTF 344 (1330)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 0148899999987
No 3
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=1.00 E-value=1 Score=11.07 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 828999999999999999999999999898313899975589899999854
Q 001844 114 SSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSL 164 (1006)
Q Consensus 114 ~~~~~qAFa~al~~~L~~~~~~l~~lE~~~~~~~~~~~~tLl~L~~~L~~~ 164 (1006)
+....+-++.-.+..|..|+..|-.+|..+.....+...|...|...|+..
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~ 56 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKI 56 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 389999999999999999999999999999734577879999999999999
No 4
>3gio_A Putative uncharacterized protein; antiparallel beta sheet, four-helix bundle, loop, DNA binding protein; 2.40A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=9.31 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=5.3
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999998715894
Q 001844 667 AVLRAIYLLGSG 678 (1006)
Q Consensus 667 ~aLr~~fLl~~G 678 (1006)
.-+|.+|+-.+.
T Consensus 82 ~KiKe~Y~~~qN 93 (186)
T 3gio_A 82 HKLKEAYLSKTN 93 (186)
T ss_dssp HHHHHHHHSTTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999862023
No 5
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=1.00 E-value=1 Score=8.86 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q 001844 120 AFSSAVSAWLKMFRGIALKEE 140 (1006)
Q Consensus 120 AFa~al~~~L~~~~~~l~~lE 140 (1006)
-|+..-+..|..+...|..+|
T Consensus 38 ~F~~sce~KLa~ln~kL~~lE 58 (73)
T 3pp5_A 38 KFELSTRNKLSDLNEKLTILD 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999889999999999999999
No 6
>2wcr_A TNF-alpha inducer protein; HP0596, TIP-alpha, immune system; 1.70A {Helicobacter pylori} PDB: 2wcq_A 3guq_A
Probab=1.00 E-value=1 Score=8.74 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999979999999998870564578776
Q 001844 221 YQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYE 253 (1006)
Q Consensus 221 ~~ll~~Ll~~~~~PYl~~l~~Wi~~G~L~Dp~~ 253 (1006)
.++-.++|....+|....+..|..-|.-..|.+
T Consensus 70 k~~~~E~F~eiTQ~i~~Sl~k~~qLG~YINPNN 102 (159)
T 2wcr_A 70 QKITNEMFIQMTQPIYDSLMNVDRLGIYINPNN 102 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHEEEEEEEEEEECTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf 654189999998999999864888615018997
No 7
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=1.00 E-value=1 Score=8.20 Aligned_cols=56 Identities=7% Similarity=0.211 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 5799999999999999-99999776368989999999722899999999999999999
Q 001844 828 KRHWLVEQKLLHFVDA-FHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSI 884 (1006)
Q Consensus 828 ~~~~~LR~~ml~Fv~~-L~~Yl~~dVIe~~w~~l~~~L~~a~dlDeLi~~H~~fL~~I 884 (1006)
.....+...+..+++. ...+++...++..|.++.++|+++ .+|++++.+++..++-
T Consensus 477 ~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~wd~y~~~l~~~-g~~~~~~~~q~~yd~~ 533 (535)
T 3omb_A 477 TKLNTNNAEIFNTTMQKTATWMSKGGIDEEWDAYCKQLDSI-GLQESTKIWQKWYDTY 533 (535)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHCCHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_conf 99999873499999999999984898277799999999987-9199999999999974
No 8
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=1.00 E-value=1 Score=7.68 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999977636898999999972-289999999999999999999315
Q 001844 843 AFHQYVMDRVYHSAWRELCEGMA-AAGSLDEVIEVHEAYLLSIQRQCF 889 (1006)
Q Consensus 843 ~L~~Yl~~dVIe~~w~~l~~~L~-~a~dlDeLi~~H~~fL~~I~~~cl 889 (1006)
.+.+.+...|--..|.+|..+|. +-..||.+..-|.+-+..-..++|
T Consensus 14 ~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmL 61 (112)
T 1ich_A 14 ATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSML 61 (112)
T ss_dssp HHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999996789999999999199888999999877687599999999
No 9
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=1.00 E-value=1 Score=7.68 Aligned_cols=122 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49878999999999999999999999999999970057777711455799999999999999999997763689899999
Q 001844 782 ANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELC 861 (1006)
Q Consensus 782 it~~~l~~Y~~IFrfLl~lKra~~~L~~~w~~l~k~r~~~~~~~~~~~~~~LR~~ml~Fv~~L~~Yl~~dVIe~~w~~l~ 861 (1006)
+.+.+..+-..+..--|--.++...|......+........ +++++.|-.+.-.=+..|..-+...|.+..-....
T Consensus 229 L~~~T~~~l~~~~e~~LI~~h~~~ll~~~~~~lL~~~~~~d----L~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~ 304 (354)
T 4a64_A 229 LDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQD----LSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVI 304 (354)
T ss_dssp SCGGGHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHTTCHHH----HHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78604899999999999999999999987999987787889----99999997406662899999999999999899881
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99722899999999999999999993158995115999999999999
Q 001844 862 EGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILG 908 (1006)
Q Consensus 862 ~~L~~a~dlDeLi~~H~~fL~~I~~~clL~~~~~~~~i~~~i~~iL~ 908 (1006)
+.-+...=+++|++.|++|-.-+.. ||-.++.....+.+++...++
T Consensus 305 ~~~~~~~~V~~LL~l~~k~~~iv~~-~F~~d~~f~~al~~af~~fiN 350 (354)
T 4a64_A 305 NPEKDKTMRQELDDFKDKVDHIIDI-CFLKNEKFINAMKEAFETFIN 350 (354)
T ss_dssp SCCSSSCHHHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHC
T ss_conf 9634679999999999999999998-869989999999999999828
No 10
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=1.00 E-value=1 Score=7.64 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 334988854345887654654346
Q 001844 980 YMSDSGNLMTAPGSEAGLGRTFAS 1003 (1006)
Q Consensus 980 Y~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1006)
|.+....+-+|...+..+|-+|+|
T Consensus 74 y~~~~p~Fh~w~~~~~~~GL~F~s 97 (118)
T 1xod_A 74 YNKVTPTFHHWRIGDKKFGLTFQS 97 (118)
T ss_dssp EEEEETTEEEEEETTEEEEEEESS
T ss_pred EEECCCCCEEEEECCEEEEEECCC
T ss_conf 984587635898289799873499
Done!