Query 001844
Match_columns 1006
No_of_seqs 274 out of 789
Neff 7.2
Searched_HMMs 13730
Date Tue Mar 26 16:51:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001844.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1140-1144//hhsearch_scop/001844hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k3ea_ d.198.1.1 (A:) Secreti 4.2 87 0.0063 5.7 5.7 13 833-845 109-121 (146)
2 d1ldja2 a.118.17.1 (A:17-410) 3.2 1.2E+02 0.009 4.7 8.6 74 827-910 303-386 (394)
3 d1hynp_ d.112.1.2 (P:) Erythro 2.7 1.5E+02 0.011 4.2 3.6 26 859-884 238-263 (293)
4 d2hyec2 a.118.17.1 (C:55-401) 2.3 1.8E+02 0.013 3.7 7.0 64 837-909 279-342 (347)
5 d1uptb_ a.193.1.1 (B:) Golgi a 2.1 2E+02 0.015 3.3 2.4 34 878-917 5-38 (58)
6 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 2.0 2.1E+02 0.015 3.2 2.2 22 116-137 31-52 (146)
7 d1t0tv_ d.58.4.10 (V:) YwfI ho 1.9 2.2E+02 0.016 3.0 1.3 18 760-777 1-18 (243)
8 d1wwha1 d.58.7.1 (A:169-249) N 1.8 2.5E+02 0.018 2.8 0.8 22 73-94 7-28 (81)
9 d1vhna_ c.1.4.1 (A:) Putative 1.7 2.5E+02 0.018 2.7 4.6 48 834-884 257-304 (305)
10 d1om4a_ d.174.1.1 (A:) Nitric 1.7 2.4E+02 0.017 2.8 -0.2 7 976-982 286-292 (418)
No 1
>d1k3ea_ d.198.1.1 (A:) Secretion chaperone CesT {Escherichia coli [TaxId: 562]}
Probab=4.23 E-value=87 Score=5.70 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q 001844 833 VEQKLLHFVDAFH 845 (1006)
Q Consensus 833 LR~~ml~Fv~~L~ 845 (1006)
|...+-.||+...
T Consensus 109 L~~~le~fI~~~e 121 (146)
T d1k3ea_ 109 LENEIEVVVKSME 121 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 2
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.17 E-value=1.2e+02 Score=4.71 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 5579999999----9999999999997763689899999997228------99999999999999999993158995115
Q 001844 827 HKRHWLVEQK----LLHFVDAFHQYVMDRVYHSAWRELCEGMAAA------GSLDEVIEVHEAYLLSIQRQCFVAPDKLW 896 (1006)
Q Consensus 827 ~~~~~~LR~~----ml~Fv~~L~~Yl~~dVIe~~w~~l~~~L~~a------~dlDeLi~~H~~fL~~I~~~clL~~~~~~ 896 (1006)
+++++.|-.+ +..+...+..|+...+.+ ........ .=+++|+..|..| +.+...||-.++.
T Consensus 303 L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~~-~~ii~~~F~~d~~-- 374 (394)
T d1ldja2 303 LGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKKY-NALVMSAFNNDAG-- 374 (394)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHHH-HHHHHTTTTTCHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHCCCCHH--
T ss_conf 99999998655351899999999999999999-----997233114578689999999999999-9999998599889--
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q 001844 897 ALIASRINSILGLA 910 (1006)
Q Consensus 897 ~~i~~~i~~iL~l~ 910 (1006)
+..++.+.|.-+
T Consensus 375 --f~~~l~~af~~f 386 (394)
T d1ldja2 375 --FVAALDKACGRF 386 (394)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
T ss_conf --999999999998
No 3
>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.73 E-value=1.5e+02 Score=4.19 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=20.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999722899999999999999999
Q 001844 859 ELCEGMAAAGSLDEVIEVHEAYLLSI 884 (1006)
Q Consensus 859 ~l~~~L~~a~dlDeLi~~H~~fL~~I 884 (1006)
.|.+.+..|++-++++++.+.||+..
T Consensus 238 ~F~~~~~~A~s~~dll~~IdEFLd~~ 263 (293)
T d1hynp_ 238 VFRIDAYMAQSRGELLHSLEGFLDCS 263 (293)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99999997899999999999973676
No 4
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.33 E-value=1.8e+02 Score=3.67 Aligned_cols=64 Identities=5% Similarity=0.160 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999997763689899999997228999999999999999999931589951159999999999999
Q 001844 837 LLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGL 909 (1006)
Q Consensus 837 ml~Fv~~L~~Yl~~dVIe~~w~~l~~~L~~a~dlDeLi~~H~~fL~~I~~~clL~~~~~~~~i~~~i~~iL~l 909 (1006)
+..+...+..|+...+.+.. ...-+...=+++++..|++|. .+...||-.++. +.+++.+.|.-
T Consensus 279 ~~~l~~~f~~~i~~~G~~~v----~~~~~~~~~V~~ll~l~~k~~-~li~~~F~~d~~----f~~~l~~af~~ 342 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTAIV----INPEKDKDMVQDLLDFKDKVD-HVIEVCFQKNER----FVNLMKESFET 342 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----SCGGGTTTHHHHHHHHHHHHH-HHHHTTTTTCHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHH-HHHHHHCCCCHH----HHHHHHHHHHH
T ss_conf 79999999999999999988----193023489999999999999-999998199889----99999999999
No 5
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.10 E-value=2e+02 Score=3.32 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999993158995115999999999999999999999
Q 001844 878 EAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQ 917 (1006)
Q Consensus 878 ~~fL~~I~~~clL~~~~~~~~i~~~i~~iL~l~l~F~~~~ 917 (1006)
-.||.+|+..-++..+. ..+-+++..+++|...+
T Consensus 5 ~EYLRnvLfeYMmG~E~------~tlaKVi~av~kF~~~Q 38 (58)
T d1uptb_ 5 FEYLRKVLFEYMMGRET------KTMAKVITTVLKFPDDQ 38 (58)
T ss_dssp HHHHHHHHHHHHTTSSH------HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCHHH
T ss_conf 99999999999707641------37999999999189999
No 6
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=2.03 E-value=2.1e+02 Score=3.21 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999999
Q 001844 116 PTLRAFSSAVSAWLKMFRGIAL 137 (1006)
Q Consensus 116 ~~~qAFa~al~~~L~~~~~~l~ 137 (1006)
|+..+....+..+++.+.....
T Consensus 31 p~~~tik~~v~~i~~kh~~~F~ 52 (146)
T d1k3ka_ 31 PLLSPIKLYITGLMRDKESLFE 52 (146)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2268999999999999999999
No 7
>d1t0tv_ d.58.4.10 (V:) YwfI homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=1.93 E-value=2.2e+02 Score=3.04 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEEEECCC
Q ss_conf 877641039999761566
Q 001844 760 FGIDGLDLLKFTYKVSWP 777 (1006)
Q Consensus 760 ~~~~~ld~l~L~Y~vpwP 777 (1006)
..++||-++.+-|++.||
T Consensus 1 ~t~eGw~vlH~f~~vd~~ 18 (243)
T d1t0tv_ 1 QTLDGWYCLHDFRTIDWS 18 (243)
T ss_dssp CCEEEEEEEEEEEEECHH
T ss_pred CCCCCEEEEEEEEEECHH
T ss_conf 965112465566662579
No 8
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.77 E-value=2.5e+02 Score=2.76 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=0.0
Q ss_pred CEECCCCHHHHHHHHHHHHHHH
Q ss_conf 3201589689999999999999
Q 001844 73 IYVTHLSLKSVHVVLNQFIYAA 94 (1006)
Q Consensus 73 ~~i~~ls~~sl~~lL~~~~~~g 94 (1006)
+.|.|+++.....+++.|..+|
T Consensus 7 V~V~G~p~~~~~~il~~F~~~G 28 (81)
T d1wwha1 7 VTVFGFPQASASYILLQFAQYG 28 (81)
T ss_dssp EEEECCCGGGHHHHHHHHHTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHH
T ss_conf 9998988577799999997420
No 9
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}
Probab=1.75 E-value=2.5e+02 Score=2.71 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999776368989999999722899999999999999999
Q 001844 834 EQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSI 884 (1006)
Q Consensus 834 R~~ml~Fv~~L~~Yl~~dVIe~~w~~l~~~L~~a~dlDeLi~~H~~fL~~I 884 (1006)
+..+..+-..+.+|+..- +.-.+|..++.++.+++++.+...+|++.+
T Consensus 257 ~~~l~~~rkhl~~~~kg~---p~ak~~R~~l~~~~~~~el~~~l~~~~~e~ 304 (305)
T d1vhna_ 257 RKAVVEMRKFLAGYTKDL---KGARRFREKVMKIEEVQILKEMFYNFIKEV 304 (305)
T ss_dssp HHHHHHHHTTHHHHTTTC---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 159999999999997279---868999999984899999999999999963
No 10
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.67 E-value=2.4e+02 Score=2.84 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 6864334
Q 001844 976 YNYFYMS 982 (1006)
Q Consensus 976 fN~fY~~ 982 (1006)
|||||+.
T Consensus 286 FNGWYM~ 292 (418)
T d1om4a_ 286 FSGWYMG 292 (418)
T ss_dssp EECCCBH
T ss_pred CCCCHHH
T ss_conf 4534112
Done!