BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001845
(1006 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 547 bits (1409), Expect = e-155, Method: Compositional matrix adjust.
Identities = 281/612 (45%), Positives = 399/612 (65%), Gaps = 26/612 (4%)
Query: 5 GMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYML 64
GMRGL+VFISDIRNC +KE E R++KEL NIR++FK +K L Y KKKYV K+L+I++L
Sbjct: 9 GMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL 68
Query: 65 GYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQ 124
G+D+DFGHMEAV+L+S+ +Y EKQ+GY+ S L+N N + +RL N ++ND+ RN TF
Sbjct: 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFM 128
Query: 125 CLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGW 184
LAL + N+G RE AE+ A ++ K++++ V++ AALCLLRLYR +PD+V + W
Sbjct: 129 GLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDW 188
Query: 185 ADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL-------------PKCDVPQEY 231
R+ LL+++ LGV+T++ SL+ L N E + + + D+ Q+Y
Sbjct: 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDL-QDY 247
Query: 232 TYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD---VVKNVNKNNASH 288
TYY +P+PWL VK +R LQ +P EDP R L E L+ IL K V +NA +
Sbjct: 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN 307
Query: 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK 348
AVLFEA++L++H D+E ++ + LG+F+ RE N+RYL LE+M + H+ +K
Sbjct: 308 AVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK 367
Query: 349 RHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLK 407
H +I +LK + D+S+R+RA+DLLY MCD SNA+ IV E+L YL TAD+++REE+ LK
Sbjct: 368 THIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK 427
Query: 408 AAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYL 467
AILAEK+A D +WYVD IL LI AGD+VS+++W+RV+Q V N +D+Q YAA E L
Sbjct: 428 VAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL 487
Query: 468 DKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAK 527
PA HE +VKV Y+LGE+ +L+A P SP F+++H K S+ T A+LLSTY K
Sbjct: 488 QAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIK 547
Query: 528 ILMHTQPADPELQNQIWAIFNKYESC--IEVEIQQRAVEYFALSRKGAA--LMDILAEMP 583
+ PE++ I + +VE+QQRAVEY LS + L +L EMP
Sbjct: 548 FV----NLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMP 603
Query: 584 KFPERQSSLIKK 595
FPER+SS++ K
Sbjct: 604 PFPERESSILAK 615
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/610 (45%), Positives = 398/610 (65%), Gaps = 26/610 (4%)
Query: 5 GMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYML 64
GMRGL+VFISDIRNC +KE E R++KEL NIR++FK +K L Y KKKYV K+L+I++L
Sbjct: 9 GMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL 68
Query: 65 GYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQ 124
G+D+DFGHMEAV+L+S+ +Y EKQ+GY+ S L+N N + +RL N ++ND+ RN TF
Sbjct: 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFM 128
Query: 125 CLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGW 184
LAL + N+G RE AE+ A ++ K++++ V++ AALCLLRLYR +PD+V + W
Sbjct: 129 GLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDW 188
Query: 185 ADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL-------------PKCDVPQEY 231
R+ LL+++ LGV+T++ SL+ L N E + + + D+ Q+Y
Sbjct: 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDL-QDY 247
Query: 232 TYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD---VVKNVNKNNASH 288
TYY +P+PWL VK +R LQ +P EDP R L E L+ IL K V +NA +
Sbjct: 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN 307
Query: 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK 348
AVLFEA++L++H D+E ++ + LG+F+ RE N+RYL LE+M + H+ +K
Sbjct: 308 AVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK 367
Query: 349 RHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLK 407
H +I +LK + D+S+R+RA+DLLY MCD SNA+ IV E+L YL TAD+++REE+ LK
Sbjct: 368 THIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK 427
Query: 408 AAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYL 467
AILAEK+A D +WYVD IL LI AGD+VS+++W+RV+Q V N +D+Q YAA E L
Sbjct: 428 VAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL 487
Query: 468 DKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAK 527
PA HE +VKV Y+LGE+ +L+A P SP F+++H K S+ T A+LLSTY K
Sbjct: 488 QAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIK 547
Query: 528 ILMHTQPADPELQNQIWAIFNKYESC--IEVEIQQRAVEYFALSRKGAA--LMDILAEMP 583
+ PE++ I + +VE+QQRAVEY LS + L +L EMP
Sbjct: 548 FV----NLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMP 603
Query: 584 KFPERQSSLI 593
FPER+SS++
Sbjct: 604 PFPERESSIL 613
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
Length = 618
Score = 265 bits (678), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 179/599 (29%), Positives = 324/599 (54%), Gaps = 44/599 (7%)
Query: 9 LSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDV 68
L I IR + +ER + KE IR+ F+ E + Y + + V K+LY++MLGY
Sbjct: 12 LRELIRTIRTARTQAEEREMIQKECAAIRSSFREED--NTY-RCRNVAKLLYMHMLGYPA 68
Query: 69 DFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLAL 128
FG +E + LI++ K+ +K++GY+ LL+E D L N ++ND+ + Q LAL
Sbjct: 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLAL 128
Query: 129 TMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRM 188
+G +G E LA +V+KL+ +S+ +RKKAALC + + RK P+++ + +
Sbjct: 129 CTLGCMGSSEMCRDLAGEVEKLLKTSN--SYLRKKAALCAVHVIRKVPELMEM--FLPAT 184
Query: 189 AQLLDERDLGVLTSSMSLLVALVSNNHE--AYWSCLPKCDVPQ---------------EY 231
LL+E++ GVL +S+ LL + + + A++ L VPQ E+
Sbjct: 185 KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL----VPQLVRILKNLIMSGYSPEH 240
Query: 232 TYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVL 291
GI P+LQV+ +R L+ D ++ ++ ++L ++ T+ KNV +A+L
Sbjct: 241 DVSGISDPFLQVRILRLLRILGR-NDDDSSEAMNDILAQVATNTETSKNV-----GNAIL 294
Query: 292 FEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQ 351
+E + +M + +E + I +LG+F+ + NIRY+ L ++ + + TD H+ ++RH+
Sbjct: 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ-TD-HNAVQRHR 352
Query: 352 AQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAIL 411
+ I+ LKD D+SI+RRA++L + + + +N + +++ELL +L + + + + + +
Sbjct: 353 STIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLA 412
Query: 412 AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPA 471
AEK+AP W++D I++++ AG +V DD ++Q +TN+ ++ Y + + +
Sbjct: 413 AEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY 472
Query: 472 IHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLST-----YA 526
+ +V+V+A+ +GEY LL C +E + +++ + S + +ST YA
Sbjct: 473 SQQPLVQVAAWCIGEYGDLLV-SGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYA 531
Query: 527 -KILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAE-MP 583
+M N+I + + Y S I+VE+QQRAVEY AL +K + L E MP
Sbjct: 532 LTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMP 590
>pdb|1QTS|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha-
Appendage
pdb|1KY6|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KY7|A Chain A, The Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Amphiphysin Fxdxf
pdb|1KYD|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KYU|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
pdb|1KYF|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
Length = 247
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 135/247 (54%), Gaps = 14/247 (5%)
Query: 728 IGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALIL 787
+G+ + F K++GVL+E+ +QIG+K+E+R + GR+ +F GNK ++ + ++
Sbjct: 7 LGSSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLI 66
Query: 788 PPSHLKMELSL----VPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLR 843
L+ L+L V T+ AQVQ + + + + VL+ +++ NV ++
Sbjct: 67 CADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVK 126
Query: 844 LPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPL-LEMANL--FNSCHL 900
LP LNKF QP +++++FF +W+ LS P ++Q + + PM + A + F S L
Sbjct: 127 LPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALL 186
Query: 901 IVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQL-RMTVASGDPTLTFELK 959
+DPNP N V + ++++T+ + CL R+E P + Q+ R+T+ + T++ L
Sbjct: 187 ---EEVDPNPANFVGAGIIHTKTTQ-IGCLLRLE--PNLQAQMYRLTLRTSKDTVSQRLC 240
Query: 960 EFIKEQL 966
E + EQ
Sbjct: 241 ELLSEQF 247
>pdb|1B9K|A Chain A, Alpha-Adaptin Appendage Domain, From Clathrin Adaptor Ap2
Length = 238
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 132/242 (54%), Gaps = 14/242 (5%)
Query: 733 ERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHL 792
+ F K++GVL+E+ +QIG+K+E+R + GR+ +F GNK ++ + ++ L
Sbjct: 3 DNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDL 62
Query: 793 KMELSL----VPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVL 848
+ L+L V T+ AQVQ + + + + VL+ +++ NV ++LP L
Sbjct: 63 QTNLNLQTKPVDPTVDGGAQVQQVINIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITL 122
Query: 849 NKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPL-LEMANL--FNSCHLIVCPG 905
NKF QP +++++FF +W+ LS P ++Q + + PM + A + F S L
Sbjct: 123 NKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALL---EE 179
Query: 906 LDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQL-RMTVASGDPTLTFELKEFIKE 964
+DPNP N V + ++++T+ + CL R+E P + Q+ R+T+ + T++ L E + E
Sbjct: 180 VDPNPANFVGAGIIHTKTTQ-IGCLLRLE--PNLQAQMYRLTLRTSKDTVSQRLCELLSE 236
Query: 965 QL 966
Q
Sbjct: 237 QF 238
>pdb|3HS8|A Chain A, Intersectin 1-Peptide-Ap2 Alpha Ear Complex
Length = 273
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 132/242 (54%), Gaps = 14/242 (5%)
Query: 733 ERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHL 792
+ F K++GVL+E+ +QIG+K+E+R + GR+ +F GNK ++ + ++ L
Sbjct: 38 DNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDL 97
Query: 793 KMELSL----VPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVL 848
+ L+L V T+ AQVQ + + + + VL+ +++ NV ++LP L
Sbjct: 98 QTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITL 157
Query: 849 NKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPL-LEMANL--FNSCHLIVCPG 905
NKF QP +++++FF +W+ LS P ++Q + + PM + A + F S L
Sbjct: 158 NKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALL---EE 214
Query: 906 LDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQL-RMTVASGDPTLTFELKEFIKE 964
+DPNP N V + ++++T+ + CL R+E P + Q+ R+T+ + T++ L E + E
Sbjct: 215 VDPNPANFVGAGIIHTKTTQ-IGCLLRLE--PNLQAQMYRLTLRTSKDTVSQRLCELLSE 271
Query: 965 QL 966
Q
Sbjct: 272 QF 273
>pdb|1W80|A Chain A, Crystal Structure Of The Alpha-adaptin Appendage Domain,
From The Ap2 Adaptor Complex, Bound To 2 Peptides From
Synaptojanin170
pdb|2VJ0|A Chain A, Crystal Structure Of The Alpha-Adaptin Appendage Domain,
From The Ap2 Adaptor Complex, In Complex With An Fxdnf
Peptide From Amphiphysin1 And A Wvxf Peptide From
Synaptojanin P170
Length = 250
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 132/242 (54%), Gaps = 14/242 (5%)
Query: 733 ERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHL 792
+ F K++GVL+E+ +QIG+K+E+R + GR+ +F GNK ++ + ++ L
Sbjct: 15 DNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDL 74
Query: 793 KMELSL----VPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVL 848
+ L+L V T+ AQVQ + + + + VL+ +++ NV ++LP L
Sbjct: 75 QTNLNLQTKPVDPTVDGGAQVQQVINIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITL 134
Query: 849 NKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPL-LEMANL--FNSCHLIVCPG 905
NKF QP +++++FF +W+ LS P ++Q + + PM + A + F S L
Sbjct: 135 NKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALL---EE 191
Query: 906 LDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQL-RMTVASGDPTLTFELKEFIKE 964
+DPNP N V + ++++T+ + CL R+E P + Q+ R+T+ + T++ L E + E
Sbjct: 192 VDPNPANFVGAGIIHTKTTQ-IGCLLRLE--PNLQAQMYRLTLRTSKDTVSQRLCELLSE 248
Query: 965 QL 966
Q
Sbjct: 249 QF 250
>pdb|1QTP|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha-
Appendage
Length = 247
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 71/247 (28%), Positives = 131/247 (53%), Gaps = 14/247 (5%)
Query: 728 IGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALIL 787
+G+ + F K++GVL+E+ +QIG+K+E+R + GR +F GNK ++ + ++
Sbjct: 7 LGSSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRXFIFYGNKTSTQFLNFTPTLI 66
Query: 788 PPSHLKMELSLVPETIPPR----AQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLR 843
L+ L+L + + P AQVQ + + + + VL+ +++ NV ++
Sbjct: 67 CADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVK 126
Query: 844 LPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPL-LEMANL--FNSCHL 900
LP LNKF QP ++++FF +W+ LS P ++Q + + P + A + F S L
Sbjct: 127 LPITLNKFFQPTEXASQDFFQRWKQLSNPQQEVQNIFKAKHPXDTEITKAKIIGFGSALL 186
Query: 901 IVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQ-LRMTVASGDPTLTFELK 959
+DPNP N V + ++++T+ + CL R+E P + Q R+T+ + T++ L
Sbjct: 187 ---EEVDPNPANFVGAGIIHTKTTQ-IGCLLRLE--PNLQAQXYRLTLRTSKDTVSQRLC 240
Query: 960 EFIKEQL 966
E + EQ
Sbjct: 241 ELLSEQF 247
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/378 (20%), Positives = 161/378 (42%), Gaps = 37/378 (9%)
Query: 32 ELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGY 91
E+ ++ NEK ++K+ V K++ +G DV + V+ + K++ Y
Sbjct: 14 EIFELKAELNNEKK---EKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVY 70
Query: 92 IVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLI 151
+ D +A+N+ D N + LA+ +G I + E L ++K +
Sbjct: 71 LYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 130
Query: 152 ISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALV 211
P VRK AA+C+ +L+ N +V G+ D + L+ + + V+ ++++ L +
Sbjct: 131 KDED--PYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188
Query: 212 SNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRI 271
++ + L ++ + T + W Q+ + L + +P R + +R+
Sbjct: 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY----NPKDDREAQSICERV 244
Query: 272 LMGTDVVKNVNKNNASHAVLFEALALVMHL------DAE------KEMMSQCIALLGKFI 319
++A+ AV+ A+ ++M D++ K++ + LL
Sbjct: 245 --------TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSG-- 294
Query: 320 AVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDV 379
EP ++Y+ L N+ L+V +I+K+ DP I ++ LD++ +
Sbjct: 295 ---EPEVQYVALRNIN--LIVQKRPEILKQEIKVFFVKYNDP-IYVKLEKLDIMIRLASQ 348
Query: 380 SNAKDIVEELLQYLSTAD 397
+N ++ EL +Y + D
Sbjct: 349 ANIAQVLAELKEYATEVD 366
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/378 (20%), Positives = 161/378 (42%), Gaps = 37/378 (9%)
Query: 32 ELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGY 91
E+ ++ NEK ++K+ V K++ +G DV + V+ + K++ Y
Sbjct: 14 EIFELKAELNNEKK---EKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVY 70
Query: 92 IVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLI 151
+ D +A+N+ D N + LA+ +G I + E L ++K +
Sbjct: 71 LYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 130
Query: 152 ISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALV 211
P VRK AA+C+ +L+ N +V G+ D + L+ + + V+ ++++ L +
Sbjct: 131 KDED--PYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188
Query: 212 SNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRI 271
++ + L ++ + T + W Q+ + L + +P R + +R+
Sbjct: 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY----NPKDDREAQSICERV 244
Query: 272 LMGTDVVKNVNKNNASHAVLFEALALVMHL------DAE------KEMMSQCIALLGKFI 319
++A+ AV+ A+ ++M D++ K++ + LL
Sbjct: 245 --------TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSG-- 294
Query: 320 AVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDV 379
EP ++Y+ L N+ L+V +I+K+ DP I ++ LD++ +
Sbjct: 295 ---EPEVQYVALRNIN--LIVQKRPEILKQEIKVFFVKYNDP-IYVKLEKLDIMIRLASQ 348
Query: 380 SNAKDIVEELLQYLSTAD 397
+N ++ EL +Y + D
Sbjct: 349 ANIAQVLAELKEYATEVD 366
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 146/346 (42%), Gaps = 34/346 (9%)
Query: 64 LGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETF 123
+G DV + V+ + K++ Y+ D +A+NT D N
Sbjct: 43 VGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNPLI 102
Query: 124 QCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDG 183
+ LA+ +G I + E L ++K + P VRK AA+C+ +L+ N +V G
Sbjct: 103 RALAVRTMGCIRVDKITEYLCEPLRKCLKDED--PYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 184 WADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQV 243
+ D + L+ + + V+ + ++ L + ++ + L + + T + W Q+
Sbjct: 161 FLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQI 220
Query: 244 KTMRAL-QYFPTVEDPNTRRSLFE-VLQRILMGTDVVKNVNKNNASHAVLFEALALVMHL 301
+ L Y P +D +S+ E V R+ ++A+ AV+ A+ ++M
Sbjct: 221 FILDCLGNYMP--KDDREAQSICERVTPRL------------SHANSAVVLSAVKVLMKF 266
Query: 302 DAEKEMMSQCI----ALLGKF------IAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQ 351
EM+S+ + LL K + EP +Y+ L N+ L+V +I+K
Sbjct: 267 ---MEMLSKDLDYYATLLKKLAPPLVTLLSAEPEPQYVPLRNIN--LIVQKRPEILKHEM 321
Query: 352 AQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAD 397
DP I ++ LD++ + +N ++ EL +Y + D
Sbjct: 322 KVFFVKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEVD 366
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 927 MLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQL 966
++CL R E+D R +L T SGDP L KE ++L
Sbjct: 103 LICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRL 142
>pdb|1L6W|A Chain A, Fructose-6-Phosphate Aldolase
pdb|1L6W|B Chain B, Fructose-6-Phosphate Aldolase
pdb|1L6W|C Chain C, Fructose-6-Phosphate Aldolase
pdb|1L6W|D Chain D, Fructose-6-Phosphate Aldolase
pdb|1L6W|E Chain E, Fructose-6-Phosphate Aldolase
pdb|1L6W|F Chain F, Fructose-6-Phosphate Aldolase
pdb|1L6W|G Chain G, Fructose-6-Phosphate Aldolase
pdb|1L6W|H Chain H, Fructose-6-Phosphate Aldolase
pdb|1L6W|I Chain I, Fructose-6-Phosphate Aldolase
pdb|1L6W|J Chain J, Fructose-6-Phosphate Aldolase
Length = 220
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 324 PNIRYLGLENMTRMLMVTDVHDIIKRH--QAQII-TSLKDPDISIRRRALDLLYGMCD-V 379
P + + + + + VTD+H ++K H QA+++ S K P R+ALD L C+ +
Sbjct: 130 PYVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTP-----RQALDCLLAGCESI 184
Query: 380 SNAKDIVEELLQY 392
+ D+ ++++ Y
Sbjct: 185 TLPLDVAQQMISY 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,060,301
Number of Sequences: 62578
Number of extensions: 991028
Number of successful extensions: 2092
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2047
Number of HSP's gapped (non-prelim): 21
length of query: 1006
length of database: 14,973,337
effective HSP length: 108
effective length of query: 898
effective length of database: 8,214,913
effective search space: 7376991874
effective search space used: 7376991874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)