Query 001845
Match_columns 1006
No_of_seqs 287 out of 1349
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1077 Vesicle coat complex A 100.0 1E-194 3E-199 1612.6 74.4 905 3-966 7-938 (938)
2 KOG1062 Vesicle coat complex A 100.0 2E-118 5E-123 1019.9 62.9 785 7-842 8-855 (866)
3 PTZ00429 beta-adaptin; Provisi 100.0 1.9E-78 4E-83 730.1 58.1 522 30-587 31-566 (746)
4 PF01602 Adaptin_N: Adaptin N 100.0 2.9E-75 6.4E-80 702.7 45.5 517 25-571 1-524 (526)
5 KOG1059 Vesicle coat complex A 100.0 8.6E-73 1.9E-77 636.6 44.2 533 7-571 14-577 (877)
6 KOG1078 Vesicle coat complex C 100.0 1E-63 2.2E-68 569.9 53.2 806 33-962 24-864 (865)
7 KOG1060 Vesicle coat complex A 100.0 6.1E-59 1.3E-63 528.5 56.0 516 34-583 38-588 (968)
8 KOG1061 Vesicle coat complex A 100.0 7.6E-59 1.6E-63 535.2 35.7 526 30-588 12-547 (734)
9 COG5240 SEC21 Vesicle coat com 100.0 8.1E-46 1.8E-50 407.9 42.0 522 33-587 24-573 (898)
10 KOG1058 Vesicle coat complex C 100.0 4.7E-44 1E-48 405.4 50.8 809 34-966 23-942 (948)
11 COG5096 Vesicle coat complex, 100.0 1E-44 2.2E-49 427.1 40.4 538 4-583 2-577 (757)
12 PF02296 Alpha_adaptin_C: Alph 100.0 5.4E-29 1.2E-33 233.0 11.2 110 851-961 1-113 (113)
13 PF02883 Alpha_adaptinC2: Adap 99.6 1.4E-14 3.1E-19 138.3 14.3 95 742-837 1-104 (115)
14 smart00809 Alpha_adaptinC2 Ada 99.5 3.9E-13 8.4E-18 125.9 13.2 97 746-842 1-98 (104)
15 PF01602 Adaptin_N: Adaptin N 99.1 1.6E-09 3.4E-14 131.1 20.5 371 53-454 56-444 (526)
16 PTZ00429 beta-adaptin; Provisi 99.0 1.1E-06 2.3E-11 108.3 39.0 367 54-452 83-469 (746)
17 PLN03200 cellulose synthase-in 98.6 0.00018 3.8E-09 95.8 38.3 508 51-578 115-731 (2102)
18 PLN03200 cellulose synthase-in 98.6 0.00074 1.6E-08 90.1 43.9 410 126-566 169-633 (2102)
19 PRK13800 putative oxidoreducta 98.5 2.6E-05 5.7E-10 100.0 27.0 88 110-210 624-711 (897)
20 PF14764 SPG48: AP-5 complex s 98.4 0.00011 2.3E-09 84.4 27.1 318 243-582 8-457 (459)
21 PF09066 B2-adapt-app_C: Beta2 98.3 4E-06 8.6E-11 79.9 10.3 109 852-967 2-114 (114)
22 KOG2171 Karyopherin (importin) 98.2 0.0098 2.1E-07 74.3 38.6 402 100-571 115-549 (1075)
23 PF10508 Proteasom_PSMB: Prote 98.2 0.0029 6.4E-08 76.0 34.1 278 49-340 52-367 (503)
24 KOG1059 Vesicle coat complex A 98.2 0.0032 6.8E-08 74.5 32.4 296 101-433 138-462 (877)
25 PRK09687 putative lyase; Provi 98.2 0.00021 4.5E-09 79.1 22.3 240 107-432 23-263 (280)
26 PF12717 Cnd1: non-SMC mitotic 98.2 2.1E-05 4.5E-10 81.2 13.1 100 120-222 1-103 (178)
27 PF10508 Proteasom_PSMB: Prote 98.1 0.0086 1.9E-07 72.1 35.4 263 134-413 69-366 (503)
28 KOG0212 Uncharacterized conser 98.1 0.017 3.6E-07 67.0 35.0 260 113-387 131-415 (675)
29 PRK13800 putative oxidoreducta 98.1 0.00061 1.3E-08 87.6 26.0 272 73-409 624-895 (897)
30 PRK09687 putative lyase; Provi 98.1 0.00066 1.4E-08 75.1 22.7 238 289-567 38-278 (280)
31 KOG0212 Uncharacterized conser 98.0 0.0014 3.1E-08 75.4 25.4 336 101-449 36-405 (675)
32 KOG2023 Nuclear transport rece 98.0 0.016 3.4E-07 68.2 33.4 391 3-425 251-744 (885)
33 KOG1062 Vesicle coat complex A 97.9 0.0012 2.7E-08 78.8 22.0 290 234-571 64-379 (866)
34 KOG0166 Karyopherin (importin) 97.9 0.02 4.3E-07 67.1 31.4 290 99-414 77-394 (514)
35 KOG2023 Nuclear transport rece 97.8 0.003 6.5E-08 74.0 22.7 376 136-548 84-520 (885)
36 KOG1060 Vesicle coat complex A 97.8 0.012 2.5E-07 70.5 26.9 271 116-416 44-353 (968)
37 KOG2171 Karyopherin (importin) 97.7 0.015 3.2E-07 72.7 27.0 262 120-433 325-614 (1075)
38 KOG1058 Vesicle coat complex C 97.6 0.0053 1.1E-07 72.9 20.6 336 102-470 15-408 (948)
39 KOG1824 TATA-binding protein-i 97.4 0.014 3.1E-07 71.0 21.3 231 152-406 827-1065(1233)
40 PF08752 COP-gamma_platf: Coat 97.4 0.0013 2.7E-08 65.1 10.2 89 697-817 13-104 (151)
41 PF05804 KAP: Kinesin-associat 97.3 0.02 4.3E-07 70.5 22.6 339 126-489 268-652 (708)
42 KOG2259 Uncharacterized conser 97.3 0.043 9.3E-07 64.8 23.5 337 99-466 150-527 (823)
43 KOG1061 Vesicle coat complex A 97.3 0.06 1.3E-06 65.0 25.4 380 54-468 64-467 (734)
44 PF12717 Cnd1: non-SMC mitotic 97.3 0.0029 6.3E-08 65.3 12.1 105 323-429 1-110 (178)
45 KOG0213 Splicing factor 3b, su 97.2 0.83 1.8E-05 55.0 35.9 495 6-571 608-1139(1172)
46 PF14807 AP4E_app_platf: Adapt 97.2 0.0032 7E-08 58.2 10.7 101 854-966 2-103 (104)
47 KOG0213 Splicing factor 3b, su 97.1 0.58 1.3E-05 56.2 30.1 210 349-571 799-1065(1172)
48 PF05804 KAP: Kinesin-associat 97.1 0.07 1.5E-06 65.8 23.8 351 186-571 253-649 (708)
49 KOG1824 TATA-binding protein-i 97.1 0.3 6.5E-06 60.1 27.9 374 141-530 434-886 (1233)
50 KOG1078 Vesicle coat complex C 96.9 0.66 1.4E-05 56.3 27.8 393 49-469 115-514 (865)
51 COG5240 SEC21 Vesicle coat com 96.8 0.097 2.1E-06 60.8 19.7 307 71-406 224-548 (898)
52 KOG2259 Uncharacterized conser 96.8 0.53 1.1E-05 56.0 25.7 246 349-601 197-514 (823)
53 PF12348 CLASP_N: CLASP N term 96.8 0.0092 2E-07 64.0 11.0 190 30-222 2-216 (228)
54 COG5181 HSH155 U2 snRNP splice 96.7 0.5 1.1E-05 55.6 24.8 442 108-570 282-869 (975)
55 PF13646 HEAT_2: HEAT repeats; 96.6 0.0063 1.4E-07 54.5 7.5 84 110-207 2-87 (88)
56 COG5096 Vesicle coat complex, 96.6 0.65 1.4E-05 57.3 26.6 119 53-174 69-196 (757)
57 COG5215 KAP95 Karyopherin (imp 96.5 1.8 3.8E-05 50.9 27.0 399 123-550 347-783 (858)
58 PF04826 Arm_2: Armadillo-like 96.4 0.14 3E-06 55.9 17.4 174 312-487 14-203 (254)
59 KOG0166 Karyopherin (importin) 96.4 3.3 7.2E-05 49.0 29.7 246 85-382 125-397 (514)
60 KOG1020 Sister chromatid cohes 96.3 6 0.00013 51.8 35.0 101 112-216 821-925 (1692)
61 KOG1241 Karyopherin (importin) 96.2 4.6 9.9E-05 49.3 31.5 438 47-551 230-732 (859)
62 cd00256 VATPase_H VATPase_H, r 96.1 0.75 1.6E-05 53.7 21.7 332 184-531 54-426 (429)
63 KOG1020 Sister chromatid cohes 96.0 1.4 3E-05 57.2 24.7 159 289-448 791-958 (1692)
64 cd00020 ARM Armadillo/beta-cat 95.7 0.031 6.7E-07 52.6 7.2 101 109-211 9-119 (120)
65 KOG1240 Protein kinase contain 95.7 1.3 2.8E-05 56.2 22.2 319 105-450 424-778 (1431)
66 COG1413 FOG: HEAT repeat [Ener 95.6 1.3 2.7E-05 50.5 21.2 111 70-199 43-153 (335)
67 cd00020 ARM Armadillo/beta-cat 95.5 0.047 1E-06 51.3 7.7 103 311-413 8-120 (120)
68 KOG1242 Protein containing ada 95.5 6.5 0.00014 47.1 26.3 387 155-566 28-439 (569)
69 PF04826 Arm_2: Armadillo-like 95.3 0.45 9.8E-06 51.9 15.1 144 146-341 16-165 (254)
70 KOG0414 Chromosome condensatio 95.2 0.068 1.5E-06 67.1 9.2 136 72-214 921-1066(1251)
71 KOG1077 Vesicle coat complex A 95.1 2.3 4.9E-05 51.3 20.9 108 353-461 115-227 (938)
72 PF12348 CLASP_N: CLASP N term 94.7 0.44 9.4E-06 51.0 13.3 82 503-584 133-221 (228)
73 COG5215 KAP95 Karyopherin (imp 94.6 6.9 0.00015 46.2 22.5 316 116-451 14-377 (858)
74 KOG1241 Karyopherin (importin) 94.5 16 0.00036 44.7 31.7 397 51-491 344-813 (859)
75 PF05918 API5: Apoptosis inhib 94.5 4.1 8.9E-05 49.0 21.3 69 144-217 25-93 (556)
76 KOG1242 Protein containing ada 94.4 15 0.00033 44.0 25.6 310 51-414 112-445 (569)
77 KOG1248 Uncharacterized conser 94.4 2.8 6.1E-05 53.4 20.3 275 58-379 599-899 (1176)
78 PF05918 API5: Apoptosis inhib 94.1 5.4 0.00012 48.0 21.2 81 71-152 24-106 (556)
79 COG5098 Chromosome condensatio 93.9 0.34 7.4E-06 57.6 10.6 170 72-254 893-1076(1128)
80 smart00638 LPD_N Lipoprotein N 93.7 1 2.2E-05 55.5 15.2 135 66-208 389-541 (574)
81 PF13646 HEAT_2: HEAT repeats; 93.7 0.21 4.6E-06 44.4 7.0 83 75-168 4-87 (88)
82 PF12755 Vac14_Fab1_bd: Vacuol 93.6 0.29 6.3E-06 45.1 7.6 80 292-374 8-92 (97)
83 KOG0915 Uncharacterized conser 93.1 9.4 0.0002 50.1 22.0 379 141-582 955-1357(1702)
84 TIGR02270 conserved hypothetic 93.0 4.2 9.1E-05 47.6 17.9 193 289-527 101-293 (410)
85 PF12755 Vac14_Fab1_bd: Vacuol 93.0 0.32 7E-06 44.8 7.0 70 137-209 22-93 (97)
86 PF14796 AP3B1_C: Clathrin-ada 93.0 0.32 7E-06 47.9 7.3 76 735-815 57-138 (145)
87 PF12231 Rif1_N: Rap1-interact 92.7 23 0.0005 41.1 23.5 259 80-371 3-296 (372)
88 KOG2759 Vacuolar H+-ATPase V1 92.4 22 0.00048 40.9 21.5 227 140-376 154-436 (442)
89 KOG1240 Protein kinase contain 92.4 3.9 8.4E-05 52.2 16.9 56 157-212 436-491 (1431)
90 PF12719 Cnd3: Nuclear condens 92.3 3.5 7.6E-05 46.2 15.7 62 499-561 112-175 (298)
91 KOG1525 Sister chromatid cohes 92.2 35 0.00077 45.2 26.0 205 361-571 234-472 (1266)
92 KOG4224 Armadillo repeat prote 91.8 8.3 0.00018 43.2 16.8 245 319-571 135-405 (550)
93 KOG0168 Putative ubiquitin fus 91.7 38 0.00081 42.3 23.4 107 109-216 169-288 (1051)
94 PF13513 HEAT_EZ: HEAT-like re 91.5 0.54 1.2E-05 38.1 6.0 49 121-171 1-55 (55)
95 PF02985 HEAT: HEAT repeat; I 91.4 0.42 9.2E-06 33.9 4.5 30 143-174 1-30 (31)
96 COG5098 Chromosome condensatio 91.2 2.4 5.2E-05 50.8 12.8 124 90-215 282-418 (1128)
97 PF10633 NPCBM_assoc: NPCBM-as 91.2 0.88 1.9E-05 39.9 7.4 56 762-817 4-60 (78)
98 PF14806 Coatomer_b_Cpla: Coat 90.9 2.1 4.6E-05 41.3 10.0 116 840-958 5-124 (129)
99 KOG0211 Protein phosphatase 2A 90.8 56 0.0012 41.3 25.3 72 139-212 234-305 (759)
100 KOG0414 Chromosome condensatio 90.6 65 0.0014 41.8 28.5 145 69-215 269-431 (1251)
101 KOG1992 Nuclear export recepto 89.9 30 0.00065 43.0 20.5 245 103-401 452-716 (960)
102 TIGR02270 conserved hypothetic 89.3 12 0.00025 44.0 16.6 245 70-380 54-298 (410)
103 PF08167 RIX1: rRNA processing 89.1 2.2 4.8E-05 43.3 9.3 134 182-356 24-158 (165)
104 COG5218 YCG1 Chromosome conden 88.9 31 0.00067 41.3 19.0 111 259-376 42-159 (885)
105 KOG2025 Chromosome condensatio 88.8 68 0.0015 39.4 27.0 138 68-208 83-255 (892)
106 KOG0915 Uncharacterized conser 88.7 1E+02 0.0022 41.3 29.4 289 123-437 1058-1368(1702)
107 COG1413 FOG: HEAT repeat [Ener 88.4 18 0.0004 40.9 17.4 199 310-571 43-242 (335)
108 KOG2025 Chromosome condensatio 88.4 72 0.0016 39.2 22.2 116 301-416 76-196 (892)
109 KOG0946 ER-Golgi vesicle-tethe 88.3 77 0.0017 39.5 33.8 332 6-373 44-432 (970)
110 PF13251 DUF4042: Domain of un 88.3 23 0.00051 36.6 16.1 150 160-342 2-177 (182)
111 KOG1822 Uncharacterized conser 88.3 53 0.0012 44.6 22.4 116 102-218 871-994 (2067)
112 PF08713 DNA_alkylation: DNA a 88.2 1.4 3.1E-05 46.5 7.6 140 72-222 53-194 (213)
113 KOG1248 Uncharacterized conser 87.5 1E+02 0.0023 40.1 36.3 464 88-571 312-856 (1176)
114 KOG1293 Proteins containing ar 87.5 78 0.0017 38.6 26.8 218 115-432 339-576 (678)
115 KOG4224 Armadillo repeat prote 87.1 32 0.00069 38.8 16.8 333 67-413 40-405 (550)
116 PF10363 DUF2435: Protein of u 87.1 3.4 7.4E-05 37.7 8.1 64 353-416 7-75 (92)
117 PF13513 HEAT_EZ: HEAT-like re 87.0 0.34 7.3E-06 39.3 1.5 52 158-209 1-54 (55)
118 PF14500 MMS19_N: Dos2-interac 86.8 41 0.00088 37.0 17.9 171 137-359 75-256 (262)
119 KOG4199 Uncharacterized conser 86.8 59 0.0013 36.5 27.3 272 112-424 82-370 (461)
120 COG5064 SRP1 Karyopherin (impo 86.5 20 0.00043 40.0 14.8 247 142-412 114-397 (526)
121 PF12719 Cnd3: Nuclear condens 86.2 8.8 0.00019 43.0 12.8 167 354-531 32-204 (298)
122 KOG0211 Protein phosphatase 2A 85.7 54 0.0012 41.4 20.1 255 141-417 397-670 (759)
123 PF07718 Coatamer_beta_C: Coat 85.0 5.2 0.00011 39.2 8.6 59 761-819 67-125 (140)
124 PF14664 RICTOR_N: Rapamycin-i 84.3 78 0.0017 36.7 19.5 145 312-458 27-183 (371)
125 PF01347 Vitellogenin_N: Lipop 83.6 2.2 4.7E-05 53.1 7.0 162 36-209 400-586 (618)
126 PF10363 DUF2435: Protein of u 82.2 5.5 0.00012 36.3 7.2 68 147-216 8-76 (92)
127 KOG1525 Sister chromatid cohes 82.2 1.4E+02 0.0031 39.9 22.4 76 477-560 280-355 (1266)
128 KOG2137 Protein kinase [Signal 81.3 39 0.00085 41.5 15.8 141 290-432 329-475 (700)
129 PF00790 VHS: VHS domain; Int 81.1 21 0.00045 35.2 11.6 98 78-175 13-120 (140)
130 KOG2062 26S proteasome regulat 80.2 1E+02 0.0022 38.1 18.4 57 289-347 152-214 (929)
131 PF12830 Nipped-B_C: Sister ch 80.2 2.5 5.4E-05 44.0 4.9 102 111-215 12-125 (187)
132 PF12530 DUF3730: Protein of u 80.0 92 0.002 33.5 17.4 173 289-469 16-214 (234)
133 KOG1924 RhoA GTPase effector D 79.6 1.7E+02 0.0037 36.4 28.2 152 298-469 240-397 (1102)
134 cd06561 AlkD_like A new struct 79.1 23 0.00049 36.7 11.9 71 145-220 108-178 (197)
135 PF14676 FANCI_S2: FANCI solen 78.9 13 0.00029 37.4 9.4 110 445-563 42-153 (158)
136 KOG1243 Protein kinase [Genera 78.2 22 0.00047 43.5 12.3 120 10-136 257-398 (690)
137 KOG1943 Beta-tubulin folding c 78.1 2.2E+02 0.0048 36.9 29.0 409 137-558 336-820 (1133)
138 KOG2038 CAATT-binding transcri 77.5 1.2E+02 0.0026 37.7 18.0 205 155-375 315-563 (988)
139 cd03561 VHS VHS domain family; 77.4 34 0.00073 33.4 11.6 94 85-178 15-117 (133)
140 KOG1086 Cytosolic sorting prot 77.2 2.9 6.4E-05 47.4 4.5 92 745-838 471-576 (594)
141 KOG1943 Beta-tubulin folding c 76.6 2.4E+02 0.0053 36.6 32.7 139 70-214 341-502 (1133)
142 KOG1949 Uncharacterized conser 76.6 47 0.001 40.7 14.1 193 136-381 167-373 (1005)
143 PF12830 Nipped-B_C: Sister ch 76.1 28 0.0006 36.1 11.3 70 306-377 4-73 (187)
144 PF12460 MMS19_C: RNAPII trans 75.6 1.7E+02 0.0038 34.4 29.2 229 121-388 165-402 (415)
145 KOG0413 Uncharacterized conser 75.2 1.3E+02 0.0027 38.5 17.5 103 107-211 576-684 (1529)
146 smart00288 VHS Domain present 74.8 38 0.00082 33.1 11.2 95 82-176 12-114 (133)
147 KOG1991 Nuclear transport rece 74.2 2.7E+02 0.0058 35.9 31.6 48 368-415 391-449 (1010)
148 COG5231 VMA13 Vacuolar H+-ATPa 73.9 1.2E+02 0.0025 34.0 15.3 69 310-378 356-428 (432)
149 KOG2160 Armadillo/beta-catenin 73.3 17 0.00037 41.0 9.2 99 115-215 132-243 (342)
150 KOG2213 Apoptosis inhibitor 5/ 72.6 1.9E+02 0.004 33.4 22.3 71 82-152 36-106 (460)
151 PF11707 Npa1: Ribosome 60S bi 72.6 1.1E+02 0.0023 34.9 15.9 90 346-442 53-154 (330)
152 PF08506 Cse1: Cse1; InterPro 71.6 20 0.00044 41.4 9.8 154 9-168 185-370 (370)
153 KOG0168 Putative ubiquitin fus 70.5 98 0.0021 38.9 15.1 178 353-532 171-366 (1051)
154 PF12054 DUF3535: Domain of un 70.5 1.7E+02 0.0037 34.7 17.4 63 516-587 291-353 (441)
155 KOG2160 Armadillo/beta-catenin 70.4 1.5E+02 0.0033 33.7 15.7 57 320-376 93-151 (342)
156 PF08167 RIX1: rRNA processing 70.2 56 0.0012 33.1 11.6 125 304-455 19-148 (165)
157 KOG1222 Kinesin associated pro 69.9 2.3E+02 0.0051 33.4 28.1 104 85-211 301-412 (791)
158 PF12460 MMS19_C: RNAPII trans 69.8 2.3E+02 0.005 33.3 28.4 185 381-569 186-392 (415)
159 COG5064 SRP1 Karyopherin (impo 69.8 22 0.00048 39.7 8.8 122 363-487 215-354 (526)
160 PF14500 MMS19_N: Dos2-interac 69.1 1.8E+02 0.004 31.9 22.0 221 147-417 4-241 (262)
161 KOG0413 Uncharacterized conser 69.0 3.4E+02 0.0074 34.9 23.3 137 307-454 613-758 (1529)
162 PF11864 DUF3384: Domain of un 68.1 2.7E+02 0.0058 33.4 36.8 385 159-566 5-461 (464)
163 PF02985 HEAT: HEAT repeat; I 68.1 10 0.00022 26.8 4.0 29 185-213 2-30 (31)
164 PF08569 Mo25: Mo25-like; Int 68.1 2.2E+02 0.0049 32.5 17.5 134 385-554 165-313 (335)
165 KOG1820 Microtubule-associated 66.5 1.2E+02 0.0025 38.8 15.4 198 137-352 248-455 (815)
166 KOG4653 Uncharacterized conser 66.4 1.9E+02 0.0041 36.6 16.5 62 155-216 738-801 (982)
167 PF12074 DUF3554: Domain of un 66.2 2.4E+02 0.0052 32.1 20.0 129 324-453 176-330 (339)
168 cd03569 VHS_Hrs_Vps27p VHS dom 66.2 61 0.0013 32.1 10.6 84 92-176 26-117 (142)
169 COG1470 Predicted membrane pro 66.1 28 0.00061 40.6 9.1 71 761-833 395-467 (513)
170 KOG4653 Uncharacterized conser 65.7 63 0.0014 40.5 12.3 69 107-176 847-921 (982)
171 PF08623 TIP120: TATA-binding 65.7 16 0.00035 37.2 6.5 59 159-218 42-100 (169)
172 PF11698 V-ATPase_H_C: V-ATPas 63.9 8.9 0.00019 36.6 3.9 65 312-376 45-113 (119)
173 KOG1991 Nuclear transport rece 63.6 4.3E+02 0.0093 34.1 32.6 151 141-341 4-158 (1010)
174 KOG1517 Guanine nucleotide bin 63.5 43 0.00093 42.8 10.5 137 71-213 513-672 (1387)
175 PLN03076 ARF guanine nucleotid 62.5 3.4E+02 0.0075 38.0 19.6 85 309-395 1181-1280(1780)
176 KOG2213 Apoptosis inhibitor 5/ 62.2 3E+02 0.0065 31.8 23.7 41 355-395 67-107 (460)
177 PF01347 Vitellogenin_N: Lipop 61.7 2.5E+02 0.0053 34.9 17.4 136 383-527 430-586 (618)
178 KOG2956 CLIP-associating prote 61.6 35 0.00076 39.8 8.8 145 24-176 283-480 (516)
179 PF02854 MIF4G: MIF4G domain; 61.2 1.5E+02 0.0033 30.2 13.4 77 370-446 4-80 (209)
180 cd03568 VHS_STAM VHS domain fa 61.0 90 0.002 31.0 10.7 88 88-176 18-113 (144)
181 PF11864 DUF3384: Domain of un 60.7 3.6E+02 0.0078 32.3 23.7 125 305-432 212-355 (464)
182 KOG2274 Predicted importin 9 [ 60.4 4.7E+02 0.01 33.5 23.8 95 118-212 502-602 (1005)
183 PF01603 B56: Protein phosphat 60.4 1.6E+02 0.0035 34.6 14.5 201 182-394 132-346 (409)
184 PF03224 V-ATPase_H_N: V-ATPas 59.4 1.3E+02 0.0028 33.8 13.2 203 194-404 68-305 (312)
185 cd03568 VHS_STAM VHS domain fa 59.2 1.2E+02 0.0026 30.1 11.2 53 287-342 17-69 (144)
186 KOG2062 26S proteasome regulat 58.9 28 0.0006 42.8 7.6 112 80-200 565-682 (929)
187 KOG2274 Predicted importin 9 [ 58.5 5E+02 0.011 33.3 33.3 115 101-216 443-563 (1005)
188 PF01603 B56: Protein phosphat 58.1 2.4E+02 0.0052 33.2 15.4 66 499-566 253-321 (409)
189 KOG2956 CLIP-associating prote 57.5 3.9E+02 0.0084 31.7 17.7 74 325-398 302-385 (516)
190 PF12765 Cohesin_HEAT: HEAT re 57.3 13 0.00028 28.5 3.1 41 167-207 2-42 (42)
191 smart00543 MIF4G Middle domain 57.1 2.3E+02 0.0049 29.0 13.7 53 377-430 11-63 (200)
192 PF10521 DUF2454: Protein of u 56.8 1.6E+02 0.0034 32.7 13.0 71 306-376 115-201 (282)
193 KOG1967 DNA repair/transcripti 56.0 1.3E+02 0.0029 38.1 12.8 64 308-372 948-1018(1030)
194 PF12765 Cohesin_HEAT: HEAT re 54.9 13 0.00029 28.5 2.9 40 334-373 3-42 (42)
195 PF03224 V-ATPase_H_N: V-ATPas 54.8 2.1E+02 0.0047 32.1 13.9 61 352-412 108-178 (312)
196 PF12397 U3snoRNP10: U3 small 54.8 53 0.0011 31.3 7.7 103 307-416 3-108 (121)
197 PF14631 FancD2: Fanconi anaem 54.6 7.5E+02 0.016 34.1 23.8 101 289-394 207-307 (1426)
198 KOG4413 26S proteasome regulat 53.6 3.7E+02 0.0081 30.3 17.9 245 349-601 82-361 (524)
199 KOG0567 HEAT repeat-containing 53.5 98 0.0021 33.8 9.9 92 108-211 188-279 (289)
200 COG5181 HSH155 U2 snRNP splice 53.3 5.1E+02 0.011 31.8 29.7 321 140-529 602-946 (975)
201 PF12530 DUF3730: Protein of u 52.8 3.2E+02 0.007 29.3 14.5 141 103-253 34-188 (234)
202 KOG0567 HEAT repeat-containing 52.6 1E+02 0.0023 33.6 9.9 62 108-175 219-282 (289)
203 PF14664 RICTOR_N: Rapamycin-i 52.4 55 0.0012 37.9 8.7 129 79-211 34-175 (371)
204 KOG2021 Nuclear mRNA export fa 52.4 5.8E+02 0.013 32.1 18.9 75 136-212 689-764 (980)
205 COG5231 VMA13 Vacuolar H+-ATPa 52.2 1.8E+02 0.0039 32.6 11.8 166 322-492 205-389 (432)
206 KOG2759 Vacuolar H+-ATPase V1 52.1 4.5E+02 0.0097 30.7 21.7 232 293-531 179-439 (442)
207 PF08631 SPO22: Meiosis protei 51.9 3.6E+02 0.0079 29.7 15.9 120 307-427 58-184 (278)
208 PF06685 DUF1186: Protein of u 51.5 3.2E+02 0.0069 29.8 13.7 160 364-552 16-199 (249)
209 KOG2085 Serine/threonine prote 51.3 64 0.0014 37.2 8.6 124 403-568 238-367 (457)
210 cd07064 AlkD_like_1 A new stru 51.3 2E+02 0.0042 30.4 12.1 139 75-222 51-189 (208)
211 KOG2021 Nuclear mRNA export fa 50.2 6E+02 0.013 32.0 16.6 74 361-453 17-98 (980)
212 KOG0946 ER-Golgi vesicle-tethe 49.1 6.6E+02 0.014 31.8 25.7 317 78-469 31-365 (970)
213 KOG2032 Uncharacterized conser 48.6 5.4E+02 0.012 30.7 17.6 94 320-416 268-373 (533)
214 PF06371 Drf_GBD: Diaphanous G 48.2 30 0.00065 35.5 5.3 54 324-377 130-186 (187)
215 cd03561 VHS VHS domain family; 48.0 1.2E+02 0.0026 29.5 9.2 93 163-272 19-111 (133)
216 KOG4524 Uncharacterized conser 48.0 1.4E+02 0.0031 38.0 11.5 245 119-377 560-875 (1014)
217 KOG2199 Signal transducing ada 47.7 94 0.002 35.6 9.0 88 76-164 14-109 (462)
218 PF11614 FixG_C: IG-like fold 47.6 95 0.0021 29.3 8.2 64 768-833 36-100 (118)
219 KOG2140 Uncharacterized conser 47.5 2.1E+02 0.0046 34.1 12.0 122 368-489 166-311 (739)
220 PF11701 UNC45-central: Myosin 46.8 59 0.0013 32.7 6.9 65 156-221 17-81 (157)
221 cd03567 VHS_GGA VHS domain fam 46.5 1.3E+02 0.0028 29.7 9.0 87 90-176 21-119 (139)
222 PF13251 DUF4042: Domain of un 46.1 93 0.002 32.2 8.3 122 86-213 18-175 (182)
223 PF05327 RRN3: RNA polymerase 45.7 3.1E+02 0.0066 33.8 14.2 58 499-560 160-219 (563)
224 PF08623 TIP120: TATA-binding 45.6 61 0.0013 33.1 6.7 29 349-378 66-94 (169)
225 PF10521 DUF2454: Protein of u 45.5 96 0.0021 34.4 9.1 126 352-487 122-273 (282)
226 cd00256 VATPase_H VATPase_H, r 44.3 6.1E+02 0.013 30.0 23.3 66 311-376 354-423 (429)
227 PF08713 DNA_alkylation: DNA a 43.1 16 0.00036 38.3 2.4 72 111-186 124-195 (213)
228 KOG0368 Acetyl-CoA carboxylase 42.3 7.6E+02 0.017 33.7 16.6 133 382-527 945-1080(2196)
229 PF07749 ERp29: Endoplasmic re 41.8 87 0.0019 28.7 6.6 57 392-450 13-73 (95)
230 PF13001 Ecm29: Proteasome sta 41.7 1E+02 0.0022 37.3 9.1 156 49-212 268-443 (501)
231 PF10266 Strumpellin: Heredita 40.4 8.4E+02 0.018 32.4 17.0 34 398-431 415-460 (1081)
232 KOG1967 DNA repair/transcripti 40.2 9.4E+02 0.02 31.1 20.9 111 321-431 181-303 (1030)
233 KOG4535 HEAT and armadillo rep 39.9 35 0.00075 39.9 4.3 130 82-214 24-181 (728)
234 cd00238 ERp29c ERp29 and ERp38 39.5 1.8E+02 0.004 26.5 8.2 52 399-451 17-72 (93)
235 KOG2137 Protein kinase [Signal 39.5 8.6E+02 0.019 30.4 18.3 141 262-412 348-495 (700)
236 PF10274 ParcG: Parkin co-regu 39.3 98 0.0021 32.0 7.1 83 69-151 37-126 (183)
237 cd03572 ENTH_epsin_related ENT 38.9 61 0.0013 31.2 5.3 48 332-381 23-70 (122)
238 PF11698 V-ATPase_H_C: V-ATPas 38.2 69 0.0015 30.7 5.4 72 142-214 43-117 (119)
239 PF05004 IFRD: Interferon-rela 37.7 6.4E+02 0.014 28.4 16.0 54 515-570 200-256 (309)
240 cd03567 VHS_GGA VHS domain fam 37.3 2.1E+02 0.0046 28.2 8.9 94 163-272 20-115 (139)
241 COG5218 YCG1 Chromosome conden 36.3 8.9E+02 0.019 29.7 24.4 99 69-168 90-194 (885)
242 PF14676 FANCI_S2: FANCI solen 36.2 1.1E+02 0.0025 30.8 7.0 104 368-472 37-146 (158)
243 KOG1243 Protein kinase [Genera 36.2 97 0.0021 38.2 7.5 88 307-395 327-415 (690)
244 TIGR01006 polys_exp_MPA1 polys 36.1 29 0.00062 37.1 2.9 35 931-966 110-144 (226)
245 COG5116 RPN2 26S proteasome re 36.0 56 0.0012 39.0 5.2 117 78-210 489-612 (926)
246 PF06685 DUF1186: Protein of u 35.9 6.1E+02 0.013 27.7 14.1 71 372-447 104-176 (249)
247 PF11841 DUF3361: Domain of un 35.7 3E+02 0.0066 27.8 9.8 94 325-421 32-138 (160)
248 cd03572 ENTH_epsin_related ENT 35.1 50 0.0011 31.8 4.0 42 136-179 32-73 (122)
249 PF05753 TRAP_beta: Translocon 34.9 2.4E+02 0.0052 29.2 9.3 74 761-834 36-115 (181)
250 KOG1949 Uncharacterized conser 34.9 1E+03 0.022 29.9 19.1 188 237-434 143-354 (1005)
251 cd00197 VHS_ENTH_ANTH VHS, ENT 34.6 1E+02 0.0022 29.0 6.1 85 289-377 19-114 (115)
252 KOG4535 HEAT and armadillo rep 34.3 5.5E+02 0.012 30.6 12.5 155 156-341 8-181 (728)
253 cd03569 VHS_Hrs_Vps27p VHS dom 33.5 2.4E+02 0.0052 27.9 8.7 91 163-272 23-113 (142)
254 PF05004 IFRD: Interferon-rela 32.8 7.6E+02 0.016 27.8 15.6 165 48-212 57-260 (309)
255 cd00197 VHS_ENTH_ANTH VHS, ENT 32.8 2.1E+02 0.0045 26.9 7.9 52 82-133 12-63 (115)
256 PF00514 Arm: Armadillo/beta-c 32.3 82 0.0018 23.5 4.1 30 182-211 11-40 (41)
257 PF04388 Hamartin: Hamartin pr 32.3 6.2E+02 0.013 31.9 14.0 137 384-531 4-141 (668)
258 COG5116 RPN2 26S proteasome re 32.1 1.2E+02 0.0026 36.3 7.1 131 77-216 523-655 (926)
259 PF06767 Sif: Sif protein; In 31.8 2.8E+02 0.006 31.0 9.3 122 21-174 197-324 (337)
260 COG5537 IRR1 Cohesin [Cell div 31.8 9.4E+02 0.02 29.6 14.2 159 313-478 317-499 (740)
261 smart00340 HALZ homeobox assoc 31.8 26 0.00057 26.7 1.2 21 18-38 13-33 (44)
262 PF08506 Cse1: Cse1; InterPro 31.7 8.7E+02 0.019 28.1 16.2 116 288-406 225-368 (370)
263 cd06561 AlkD_like A new struct 30.6 44 0.00094 34.6 3.2 74 112-189 110-184 (197)
264 COG5117 NOC3 Protein involved 30.4 4.4E+02 0.0095 31.0 10.9 48 127-174 430-480 (657)
265 KOG2032 Uncharacterized conser 30.4 1E+03 0.022 28.6 20.8 103 111-214 262-373 (533)
266 smart00288 VHS Domain present 30.0 2.9E+02 0.0062 26.9 8.6 91 164-272 20-110 (133)
267 KOG2933 Uncharacterized conser 29.9 2.2E+02 0.0047 31.9 8.2 122 87-214 70-201 (334)
268 PF14225 MOR2-PAG1_C: Cell mor 29.8 7.8E+02 0.017 27.0 13.3 85 363-451 130-218 (262)
269 KOG4413 26S proteasome regulat 28.9 8.9E+02 0.019 27.4 15.7 73 137-211 77-156 (524)
270 PF08389 Xpo1: Exportin 1-like 28.4 1.4E+02 0.0031 28.8 6.3 51 158-211 2-53 (148)
271 PF11841 DUF3361: Domain of un 28.3 4.8E+02 0.01 26.5 9.7 105 160-267 33-144 (160)
272 PLN03076 ARF guanine nucleotid 28.2 1.9E+03 0.042 31.1 30.0 167 35-213 1071-1254(1780)
273 KOG2933 Uncharacterized conser 27.5 2.3E+02 0.005 31.7 7.9 144 57-204 71-226 (334)
274 PF11935 DUF3453: Domain of un 27.3 75 0.0016 34.4 4.3 58 155-212 4-72 (239)
275 PF14874 PapD-like: Flagellar- 27.3 4.7E+02 0.01 23.6 13.1 56 760-816 17-72 (102)
276 smart00638 LPD_N Lipoprotein N 26.9 1.2E+03 0.027 28.4 22.9 84 324-416 340-429 (574)
277 PF00553 CBM_2: Cellulose bind 26.7 4.7E+02 0.01 24.0 9.0 32 757-789 8-39 (101)
278 PF06159 DUF974: Protein of un 26.4 3.5E+02 0.0075 29.5 9.3 76 759-834 10-94 (249)
279 PF14911 MMS22L_C: S-phase gen 26.3 1.1E+03 0.023 27.5 14.9 71 379-450 271-347 (373)
280 PF00927 Transglut_C: Transglu 26.2 1.8E+02 0.004 26.8 6.2 58 761-819 13-78 (107)
281 KOG3687 Tuberin - Rap/ran-GTPa 26.1 1.2E+03 0.027 30.3 14.3 110 307-418 64-200 (1697)
282 KOG2149 Uncharacterized conser 26.0 5.6E+02 0.012 29.8 10.9 101 315-418 63-175 (393)
283 PF10274 ParcG: Parkin co-regu 25.9 1.5E+02 0.0033 30.7 5.9 84 307-395 77-164 (183)
284 PF11707 Npa1: Ribosome 60S bi 24.8 1E+03 0.023 26.8 18.6 151 244-409 5-183 (330)
285 KOG0392 SNF2 family DNA-depend 24.3 1.1E+03 0.025 31.5 14.0 169 307-486 164-340 (1549)
286 PF11865 DUF3385: Domain of un 24.3 4.3E+02 0.0093 26.6 8.9 29 384-412 10-39 (160)
287 cd08050 TAF6 TATA Binding Prot 24.1 9.4E+02 0.02 27.5 12.7 123 347-472 176-323 (343)
288 PF00790 VHS: VHS domain; Int 23.0 5.4E+02 0.012 25.1 9.1 59 162-222 23-81 (140)
289 TIGR01451 B_ant_repeat conserv 22.7 2.1E+02 0.0046 23.0 5.1 35 761-795 10-44 (53)
290 COG5066 SCS2 VAMP-associated p 22.3 3.1E+02 0.0067 28.9 7.2 88 766-870 20-107 (242)
291 KOG3252 Uncharacterized conser 21.8 1.5E+02 0.0033 30.4 4.9 64 136-203 21-85 (217)
292 COG4912 Predicted DNA alkylati 21.8 3.7E+02 0.008 28.7 7.8 61 155-218 129-189 (222)
293 PF09324 DUF1981: Domain of un 21.6 2.9E+02 0.0062 24.7 6.2 65 141-207 16-83 (86)
294 KOG2011 Sister chromatid cohes 21.1 1.8E+02 0.0039 37.9 6.5 110 89-216 284-401 (1048)
295 PF14838 INTS5_C: Integrator c 20.7 1.8E+03 0.038 28.0 19.2 218 137-391 149-404 (696)
296 PF00514 Arm: Armadillo/beta-c 20.5 1.7E+02 0.0037 21.7 4.0 27 386-412 14-40 (41)
297 KOG2141 Protein involved in hi 20.5 1.8E+03 0.038 27.9 15.7 92 480-584 433-526 (822)
No 1
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-194 Score=1612.56 Aligned_cols=905 Identities=49% Similarity=0.779 Sum_probs=811.5
Q ss_pred CCCCCcHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCC
Q 001845 3 LSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAP 82 (1006)
Q Consensus 3 ~~~mrgL~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~ 82 (1006)
+++||||+.||+|||+|+++|+|+|||++|+++||++|+..|.|++|+||||||||+||||+|||++|||||+++|++|+
T Consensus 7 ~~gmrGL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~ 86 (938)
T KOG1077|consen 7 GDGMRGLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSN 86 (938)
T ss_pred CCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcC
Confidence 47899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHH
Q 001845 83 KYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRK 162 (1006)
Q Consensus 83 ~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRK 162 (1006)
+|+||+||||++++++++++|++.|++|+|+|||.|.||.++||||+++||||++||++.+.++|.|+|+|+++.+||||
T Consensus 87 kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkq 166 (938)
T KOG1077|consen 87 KYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQ 166 (938)
T ss_pred CccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCC-----------CCC-cc
Q 001845 163 KAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-----------DVP-QE 230 (1006)
Q Consensus 163 kA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l-----------~~~-~e 230 (1006)
|||+|++|+||++||++..++|.++|..+|+|+|.||++++.+++..|++.+|+.|+.|++.. ..+ .|
T Consensus 167 kaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qd 246 (938)
T KOG1077|consen 167 KAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQD 246 (938)
T ss_pred HHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhh
Confidence 999999999999999999889999999999999999999999999999999999998887765 455 89
Q ss_pred ccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCC---cccccccCCChhHHHHHHHHHHHhcCCcHHH
Q 001845 231 YTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD---VVKNVNKNNASHAVLFEALALVMHLDAEKEM 307 (1006)
Q Consensus 231 y~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~---~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l 307 (1006)
|+||++|+||+|+|++|+|+.|++.+|+..+..+.++++++|+.++ .+++++|+|+.|||+||||++++|+++++++
T Consensus 247 YTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l 326 (938)
T KOG1077|consen 247 YTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL 326 (938)
T ss_pred ceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999999998999999999999999997776 5689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhccc-CcChhHHHHHHHHhhhccCcccHHHHH
Q 001845 308 MSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIV 386 (1006)
Q Consensus 308 ~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~-d~D~sIr~~aL~lL~~l~n~~Nv~~Iv 386 (1006)
+.+|++.|+.||+++++|+||++|++|++|+...+.+++|+.|++.|+.+|+ ++|.|||+||+||||.|||.+|++.||
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV 406 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIV 406 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHH
Confidence 9999999999999999999999999999999998888999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 001845 387 EELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREY 466 (1006)
Q Consensus 387 ~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~ 466 (1006)
.||+.|+..+|+.+|+|++.|+++|+|||++|++||||++++|++.+|++++||||+|++|||+|+|++|.||+++++++
T Consensus 407 ~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~ 486 (938)
T KOG1077|consen 407 AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEY 486 (938)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 001845 467 LDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAI 546 (1006)
Q Consensus 467 L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~v 546 (1006)
|+.+.+||.|+|+++|||||||++|.++|+++|..+|.+|+++|+.|++.||+++||+++| |.+.+||+++.|.++
T Consensus 487 Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiK----l~nl~PEi~~~v~~v 562 (938)
T KOG1077|consen 487 LQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIK----LINLFPEIKSNVQKV 562 (938)
T ss_pred HhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHH----HHhhChhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 667789999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHhcch--HHHHHhhhcCCCCCccchhHhhhhhhcccchhHHHHHHHHhhhhhccchhc-
Q 001845 547 FNKYESCIEVEIQQRAVEYFALSRKG--AALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALV- 623 (1006)
Q Consensus 547 l~~~~~s~d~EvqqRA~eyl~Ll~~~--~~~~~vl~~mP~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 623 (1006)
|+.+.+..|+|+||||+||+.|.+.. |+++.||++||||++|+|+|++||+++.+.....+ +..+.
T Consensus 563 Fq~~~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~ssll~kl~~~~~~~~~l~-----------~~~~~~ 631 (938)
T KOG1077|consen 563 FQLYSNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLKKKKPSAISLR-----------AGAGPK 631 (938)
T ss_pred HHhhcccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCccccchHHHHhhccCCchhccc-----------cccCCc
Confidence 99999999999999999999999984 99999999999999999999999998876443221 00000
Q ss_pred -ccccCCCCCCCCcccccccccCCCCCccccCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcccccc
Q 001845 624 -VADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKWDFDQSRSSTSTSSPSPSPDLLGDLLGPLAIEGPPVAGESEQNVVS 702 (1006)
Q Consensus 624 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~dl~g~~~~~~~~~~~~~~~~~~~ 702 (1006)
-+.+.++.+++.+ +++... . ...|..++ .++|++ . ...+..
T Consensus 632 ~~~~~~~~~~~~tp---~~v~~~--s----------------------------~st~~~~v---~~~p~~-n-~t~~~~ 673 (938)
T KOG1077|consen 632 TLANPPPVASEPTP---SKVSKR--S----------------------------NSTDPLSV---PSPPPP-N-NTISSV 673 (938)
T ss_pred ccCCCCcccCCCCc---ccccCC--C----------------------------CCCCcccC---CCCCCC-C-CCccCC
Confidence 0011111111111 000000 0 00111111 000000 0 000000
Q ss_pred CCcCcccccccccCCcc-cccCCcCCCCchHHHHHhhhccCceeeecCCCeEEEEEEeEecceeEEEEEEeecCCCCcce
Q 001845 703 GLEGVAAVDAAAIVPVT-VQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFS 781 (1006)
Q Consensus 703 g~~~~~~~~~~~~~~~~-~~~~~l~p~~~~~~~~~~ll~~~~GvlYe~~~lqI~~k~~~~~~~~~i~l~~~Nks~~~lt~ 781 (1006)
|+..+++ + ...++.+ ++...+++ +|..+|+|||++++||||||+++|||+|++|++++|++.+|||||+++|+++
T Consensus 674 ~~~~~~~-d-i~s~~~~~~s~~~~p~--~~~~~f~r~~~k~~GVLfed~~iQIgvk~e~r~~~grl~LfygNkts~~lt~ 749 (938)
T KOG1077|consen 674 NSQIPSV-D-IFSGLDGYYSRQILPG--NAFYGFTRFCSKDNGVLFEDSLIQIGVKSETRNNLGRLYLFYGNKTSVPLTS 749 (938)
T ss_pred CCCCCch-h-hhcCccccccccCCCh--hhhhhhhhheeccCcEEeeccceeEEEeeeccCcCCeEEEEecccccccccc
Confidence 0000000 0 0000000 01122334 8999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCc----eeEEeecCCcccCCCCeeEEEEEEEecCCCCCCcEEEEEEeeCCceEEEE--eccCceeecccccc
Q 001845 782 VQALILPPSH----LKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVK--LRLPAVLNKFLQPI 855 (1006)
Q Consensus 782 f~~~~~~p~~----l~~~~~~~~~tI~p~~q~q~~v~v~~~~~~~~~P~l~i~y~~~g~~~~~~--LklPi~~~kf~~p~ 855 (1006)
|+.++.+|.. +..+..|++++|+||.|+||.+++.|...|.++|++.|+|++||..+... +++|+.++||++|.
T Consensus 750 ~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~pil~isfk~g~ti~~~ta~l~lp~~iskf~~Pt 829 (938)
T KOG1077|consen 750 LSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPPILAISFKFGGTINLKTAILKLPVLISKFFQPT 829 (938)
T ss_pred cceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCCeEEEEEEeCCchhhhhhceechhhHhhhcCcc
Confidence 9999988753 33333477799999999999999999999999999999999999887776 99999999999999
Q ss_pred cCChhhHHHHhhhcCCCCcceeEeecCCCCCCHHHHHHHHhccceEEecCCCCCCCcEEEEEEEeecCCCceeEEEEEee
Q 001845 856 TVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIET 935 (1006)
Q Consensus 856 ~~~~~~F~~rW~~i~~~~~E~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~d~~~~n~~~aGi~~~~~~g~~~~Lvrie~ 935 (1006)
.|+.++||.|||+++++.+|.|++|+..++.+...+++.+.+||+++|+++||||+|+|+||||||++ .|+|||+|||+
T Consensus 830 ~l~s~~Ff~rWk~ls~~~~~~q~~fk~~rpld~~~l~~~l~gf~~~l~~~VDpnp~nlv~agii~t~t-q~vgCL~RiEp 908 (938)
T KOG1077|consen 830 ELTSEDFFSRWKQLSGPQQEAQEVFKANRPLDAPSLENKLLGFGQTLLDNVDPNPSNLVGAGIIHTKS-QNVGCLLRIEP 908 (938)
T ss_pred cccHHHHHHHHHhcccchhHHHHHHhcCCccccHHHHHHHhhhhHHHhccCCCCccceEEEEEEeecc-eeeeeEEEecc
Confidence 99999999999999998889999999889999999999999999999999999999999999999999 59999999999
Q ss_pred CcccCceEEEEEEeCCCchHHHHHHHHHHHh
Q 001845 936 DPADRTQLRMTVASGDPTLTFELKEFIKEQL 966 (1006)
Q Consensus 936 ~~~~~~~~ritvRs~~~~ls~~i~~~i~~~l 966 (1006)
+.++. ++|+|+||+++.+++.++++|+.++
T Consensus 909 n~~~~-~~rltvrss~~tlak~l~e~l~nqf 938 (938)
T KOG1077|consen 909 NAQAQ-MYRLTVRTSKPTLAKELVELLKNQF 938 (938)
T ss_pred CCcce-EEEEEEecCCchHHHHHHHHHhhcC
Confidence 98777 9999999999999999999999875
No 2
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-118 Score=1019.93 Aligned_cols=785 Identities=28% Similarity=0.438 Sum_probs=628.1
Q ss_pred CcHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCCCcCc
Q 001845 7 RGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPE 86 (1006)
Q Consensus 7 rgL~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~~~~~ 86 (1006)
..|++||++||+++|++|||+.|+||++.||..|+++ ..+...|+++|.||+|+||+||+.+||++||+||++|.+|.+
T Consensus 8 srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~-~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~d 86 (866)
T KOG1062|consen 8 SRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREP-TNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLD 86 (866)
T ss_pred chHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchH
Confidence 6799999999999999999999999999999999998 778999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001845 87 KQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAAL 166 (1006)
Q Consensus 87 KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~l 166 (1006)
||+|||+++++++|++|+++|+||+|+|||+|+|.+++||||+++|+|+++||+++|.|+|.+++. +++|||||||++
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~--~~~~~irKKA~L 164 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQ--HRDPYIRKKAAL 164 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHh--CCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 689999999999
Q ss_pred HHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh---hhhccCCCC----------CCCccccc
Q 001845 167 CLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE---AYWSCLPKC----------DVPQEYTY 233 (1006)
Q Consensus 167 al~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~---~~~~~v~~l----------~~~~ey~~ 233 (1006)
|++|++|+.|+++. .|.+...++|.|+|+||+.+++.++.++|+.+++ .|++|++.+ .+++||+|
T Consensus 165 ca~r~irK~P~l~e--~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv 242 (866)
T KOG1062|consen 165 CAVRFIRKVPDLVE--HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV 242 (866)
T ss_pred HHHHHHHcCchHHH--HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc
Confidence 99999999999995 9999999999999999999999999999999765 577777665 79999999
Q ss_pred cCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHH
Q 001845 234 YGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIA 313 (1006)
Q Consensus 234 ~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~ 313 (1006)
+|+++||+||+|||+|+.|+.. |++.++.|.|+|.++.++||+++ |+++||+||||++|+.+.++..++..+++
T Consensus 243 ~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdssk-----N~GnAILYE~V~TI~~I~~~~~Lrvlain 316 (866)
T KOG1062|consen 243 HGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSK-----NAGNAILYECVRTIMDIRSNSGLRVLAIN 316 (866)
T ss_pred cCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccc-----cchhHHHHHHHHHHHhccCCchHHHHHHH
Confidence 9999999999999999999996 89999999999999999999664 57999999999999999999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHh
Q 001845 314 LLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYL 393 (1006)
Q Consensus 314 ~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl 393 (1006)
+|++||.++|.|+||+||+.|.++++.++ +++++|+.+|+.||+|+|.|||||||||+|.|+|++||+.+|+||++||
T Consensus 317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL 394 (866)
T KOG1062|consen 317 ILGKFLLNRDNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFL 394 (866)
T ss_pred HHHHHhcCCccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999876 6899999999999999999999999999999999999999999999999
Q ss_pred hhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHhhcCC--
Q 001845 394 STADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNN-EDLQPYAAAKAREYLDKP-- 470 (1006)
Q Consensus 394 ~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~-~~l~~~a~~~l~~~L~~~-- 470 (1006)
..+|.+||.+++.+|+.++|||+|+.+||+|+|+++++.+|+||.+++|+.++++|.+. +++++|++.+++..+...
T Consensus 395 ~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~ 474 (866)
T KOG1062|consen 395 ESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTL 474 (866)
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998 899999999999988764
Q ss_pred --chhhHHHHHHHhhhccccccccCCC------CCChHHHHHHHHhhC--CCCChhHHHHHHHHHHHHHhhcCCCChhHH
Q 001845 471 --AIHETMVKVSAYLLGEYSHLLARRP------GCSPKEIFSIIHEKL--PTVSMSTVAILLSTYAKILMHTQPADPELQ 540 (1006)
Q Consensus 471 --~~~e~l~k~~~wilGEyg~~i~~~~------~~~~~~~~~~l~~~~--~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~ 540 (1006)
...+.++++++|++||||+++.+.. .+++.+++..+++-+ ...+..||+++|+|++||+.|| +...
T Consensus 475 ~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~----~s~~ 550 (866)
T KOG1062|consen 475 LDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF----HSSS 550 (866)
T ss_pred hhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc----cccH
Confidence 5678999999999999999887731 356788888887654 3456899999999999988874 4457
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHhcc-hHHHHHhhhcCCCCCccchhHhhhhhhcccchhHHHHHHHHhhhhhcc
Q 001845 541 NQIWAIFNKYESCIEVEIQQRAVEYFALSRK-GAALMDILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTS 619 (1006)
Q Consensus 541 ~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~-~~~~~~vl~~mP~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 619 (1006)
++|.+++..|..|.|.|+||||+||..|+.. ..+.+.+++.||.+++-+- -.++....+..... ....-
T Consensus 551 ~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~e~~~~--~~~~~g~~~~~i~~--------~~~p~ 620 (866)
T KOG1062|consen 551 ERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSCEDITV--DARLDGNGPAAIEQ--------GAEPY 620 (866)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccc--ccccccchHHHHHh--------ccCCC
Confidence 8899999999999999999999999999955 7899999999998875111 01111111100000 00000
Q ss_pred chhc---------ccccCCCCCCCCcccccccccCCCCCccccCCCccCCCCCCCCCCCCCCCCCCccccccC-------
Q 001845 620 TALV---------VADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKWDFDQSRSSTSTSSPSPSPDLLGDLLG------- 683 (1006)
Q Consensus 620 ~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~dl~g------- 683 (1006)
..++ +..+.+....+.....++.++-+..-+ .++++.+. ++.+ .+..+...|++|
T Consensus 621 ~~~~~~~~~~~l~d~~~~~~~~~~~s~~~~l~~~L~~~~~-----~p~~~~~~---~p~p-~~~~~~~~~I~~~~~s~~~ 691 (866)
T KOG1062|consen 621 KSAGESLGVAELSDLLPLDSKETPTSSLNDLEDLLDKDES-----SPGASNGA---APVP-SEGGNVLQDILGDVLSQSK 691 (866)
T ss_pred cccccccccchhhhccCCCCCcCCcccccchhccCCCccC-----CCCCCCCC---CCCC-CCccchhhhhhhccccccc
Confidence 0000 000001111111111222222110000 00000000 0000 011223333332
Q ss_pred ----------CCCCC-CCCCCCCCccccccCCcCcccccccccCCcccccCCcCCCCchHHHHHhhh--ccCceeeecCC
Q 001845 684 ----------PLAIE-GPPVAGESEQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALC--LKDSGVLYEDP 750 (1006)
Q Consensus 684 ----------~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ll--~~~~GvlYe~~ 750 (1006)
..+.. ++++++ |..++ -.+. ++.+....++ +.|... ++++- ..+.-++|+..
T Consensus 692 ~~~~~~~L~~~~~~~~~~s~a~--~~~s~-~sp~-~s~~~s~l~~-------l~p~p~----~~~~~~~~~~~~~~~dks 756 (866)
T KOG1062|consen 692 NSKEKLDLAGSLFVGSSSSAAP--PAPSG-TSPS-SSQPFSLLSG-------LSPDPS----KNTLAATDYPSIKAYDKS 756 (866)
T ss_pred cchhccccccccccccCCCCCC--CCcCC-CCCc-CCCcchhhcc-------cCCCcc----ccccccccCCcceeeecc
Confidence 11000 001110 00000 0000 0001111111 111000 11111 24567899999
Q ss_pred CeEEEEEEeEecc---eeEEEEEEeecCCCC-cceeEEEEeCCCceeEEeecCC-cccCC--CCeeEEEEEEEecCCCCC
Q 001845 751 YVQIGIKAEWRGH---HGRLVLFLGNKNTSP-LFSVQALILPPSHLKMELSLVP-ETIPP--RAQVQCPLEVMNLRPSRD 823 (1006)
Q Consensus 751 ~lqI~~k~~~~~~---~~~i~l~~~Nks~~~-lt~f~~~~~~p~~l~~~~~~~~-~tI~p--~~q~q~~v~v~~~~~~~~ 823 (1006)
.++++.++...+. ...+.++|+|+++.+ ++.|-++.++|+.++.++.|.+ ..+++ |+-+.|.+.+...+--..
T Consensus 757 sl~~~~~~~k~~~n~~~t~i~~~~tn~s~~~~l~~F~~~aAv~ks~ql~l~~~ss~~~~~~~~g~~tq~~rv~n~~~~~l 836 (866)
T KOG1062|consen 757 SLLVELSFTKGPSNKKTTVITLTFTNLSPNTDLTDFHFQAAVPKSLQLQLQPASSNSLPASGGGHITQVLRVLNPQKSTL 836 (866)
T ss_pred cceeeeeeccCCCCCceeEEEeeccCCCCCcchhhhcccccchHHHhhccCCccccccCcCCCCcceeEEEEecCCCceE
Confidence 9999999976443 589999999999998 9999999999999999988887 67777 455777887776442234
Q ss_pred CcEEEEEEeeCCceEEEEe
Q 001845 824 VAVLDFSYKFNTNMVNVKL 842 (1006)
Q Consensus 824 ~P~l~i~y~~~g~~~~~~L 842 (1006)
..+++++|..+|+....++
T Consensus 837 ~~r~rl~~~~~G~s~~e~~ 855 (866)
T KOG1062|consen 837 KLRLRLSYSLNGSSVLENF 855 (866)
T ss_pred EEEEEEEeecCCchHHhhh
Confidence 5788889999998664443
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=1.9e-78 Score=730.10 Aligned_cols=522 Identities=18% Similarity=0.269 Sum_probs=449.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHH
Q 001845 30 DKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAI 109 (1006)
Q Consensus 30 ~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~Lvi 109 (1006)
..|+++||+.+++. +.++|+++++|+|+++++|+|++++|++|+++++|+|+++|||||||++.|++.++|+++|+|
T Consensus 31 kge~~ELr~~L~s~---~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaI 107 (746)
T PTZ00429 31 RGEGAELQNDLNGT---DSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAV 107 (746)
T ss_pred cchHHHHHHHHHCC---CHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHH
Confidence 35999999999876 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHH
Q 001845 110 NTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMA 189 (1006)
Q Consensus 110 Nsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~ 189 (1006)
|+|+||++|+||.+||+|||+||+|+.+++++.+.+.|++++. |.+|||||+|++|++|+|+.+|+.+...+|.+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~--D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVA--DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLV 185 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHH
Confidence 9999999999999999999999999999999999999999997 78999999999999999999999987678999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHhcChhhhhcc---CCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHH
Q 001845 190 QLLDERDLGVLTSSMSLLVALVSNNHEAYWSC---LPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFE 266 (1006)
Q Consensus 190 ~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~---v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~ 266 (1006)
++|+|+|++|+.+|+.+|++|+.++|+.+... +.++ +......+||+|+.+|++|..|.+.++.+ ..+
T Consensus 186 ~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~L-----l~~L~e~~EW~Qi~IL~lL~~y~P~~~~e----~~~ 256 (746)
T PTZ00429 186 ELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRL-----VYHLPECNEWGQLYILELLAAQRPSDKES----AET 256 (746)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHH-----HHHhhcCChHHHHHHHHHHHhcCCCCcHH----HHH
Confidence 99999999999999999999998876533211 1111 01123458999999999999998864332 335
Q ss_pred HHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCc--HHHHHHHHHHHHH---hhcCCCCchhHHHHHHHHHHHccC
Q 001845 267 VLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAE--KEMMSQCIALLGK---FIAVREPNIRYLGLENMTRMLMVT 341 (1006)
Q Consensus 267 ~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~--~~l~~~~~~~L~~---fL~s~~~nirylaL~~L~~l~~~~ 341 (1006)
+++.++ +.++|+|+ ||+|+|+++++++.+. .+++..++..++. +|.++++|+||++|++|..|++..
T Consensus 257 il~~l~------~~Lq~~N~--AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 257 LLTRVL------PRMSHQNP--AVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred HHHHHH------HHhcCCCH--HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHC
Confidence 666555 33567776 9999999999998753 4555655544332 456889999999999999999987
Q ss_pred CcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhh
Q 001845 342 DVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSW 421 (1006)
Q Consensus 342 ~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w 421 (1006)
| ..+..|. ++|+|+.+++.+||++||++|+.|||++|++.|++||.+|+.+.|.+|++++|.+|+.||.||+...+|
T Consensus 329 P--~lf~~~~-~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~ 405 (746)
T PTZ00429 329 P--NLLRTNL-DSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPD 405 (746)
T ss_pred H--HHHHHHH-HhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHH
Confidence 5 5788884 557777777778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHH-HhhhccccccccCCCCCChH
Q 001845 422 YVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVS-AYLLGEYSHLLARRPGCSPK 500 (1006)
Q Consensus 422 ~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~-~wilGEyg~~i~~~~~~~~~ 500 (1006)
||++++++++..++++. +++..+.+|++++|+. +.+..+++.+......++..|++ +||+|||++.+.+ ..
T Consensus 406 cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~--~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~ 477 (746)
T PTZ00429 406 CANLLLQIVDRRPELLP-QVVTAAKDIVRKYPEL--LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GK 477 (746)
T ss_pred HHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccH--HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HH
Confidence 99999999988777654 6889999999999985 46777777654344566667765 9999999999876 56
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHhcch----HHH
Q 001845 501 EIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYE-SCIEVEIQQRAVEYFALSRKG----AAL 575 (1006)
Q Consensus 501 ~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~-~s~d~EvqqRA~eyl~Ll~~~----~~~ 575 (1006)
++++.+.++|..++.+||+++||+++|+|++ +.++.+..+.++|+.+. ++.|+||||||++||+|++.+ .+.
T Consensus 478 ~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~---~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~ 554 (746)
T PTZ00429 478 DIIQRFIDTIMEHEQRVQLAILSAAVKMFLR---DPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMK 554 (746)
T ss_pred HHHHHHHhhhccCCHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHH
Confidence 8898889999999999999999999999876 23568889999998874 689999999999999999863 367
Q ss_pred HHhhhcCCCCCc
Q 001845 576 MDILAEMPKFPE 587 (1006)
Q Consensus 576 ~~vl~~mP~~~~ 587 (1006)
+.|+.++||...
T Consensus 555 ~iv~~~~~~i~~ 566 (746)
T PTZ00429 555 KVVHGQMVPVNV 566 (746)
T ss_pred HHHcCCCCCCCc
Confidence 888899988653
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=2.9e-75 Score=702.69 Aligned_cols=517 Identities=35% Similarity=0.585 Sum_probs=449.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCCCcCchhhhHHHHHhhcccChhH
Q 001845 25 ERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDF 104 (1006)
Q Consensus 25 e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~ 104 (1006)
|+++|.+|++++|++|+ . +.++|+++++||+|++++|+|++|||++++++++|+++.+||+||||++.+++.++|+
T Consensus 1 ~~~~~~~el~~~~~~~~-~---~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~ 76 (526)
T PF01602_consen 1 ERKRISQELAKILNSFK-I---DISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL 76 (526)
T ss_dssp HHHHHHHHHHHHHHCSS-T---HHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH
T ss_pred CcchHHHHHHHHHhcCC-C---CHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH
Confidence 89999999999999886 2 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcH
Q 001845 105 LRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGW 184 (1006)
Q Consensus 105 ~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~ 184 (1006)
++|++|+++|||+|+||++||+||+++|+++++++++.+.+.|.+++. |++|||||+|++|++++|+.+|+.++.. |
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~ 153 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLS--DPSPYVRKKAALALLKIYRKDPDLVEDE-L 153 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCHCCHHGG-H
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhc--CCchHHHHHHHHHHHHHhccCHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999998 6899999999999999999999999744 8
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCC-CCCccccccCCCChhHHHHHHHHHhcCCCCCChhhH--
Q 001845 185 ADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-DVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTR-- 261 (1006)
Q Consensus 185 ~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l-~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~-- 261 (1006)
.+.+.++|.|+|++|+.+|+.++.+| +.+++.+..+++.+ +.. ....+.++||+|++++++|..|.+. ++...
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L--~~~l~~~~~~~q~~il~~l~~~~~~-~~~~~~~ 229 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRIL--CQLLSDPDPWLQIKILRLLRRYAPM-EPEDADK 229 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHH--HHHHTCCSHHHHHHHHHHHTTSTSS-SHHHHHH
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHh--hhcccccchHHHHHHHHHHHhcccC-ChhhhhH
Confidence 99999999999999999999999999 55554433333222 000 0112689999999999999999986 55555
Q ss_pred HHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC
Q 001845 262 RSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT 341 (1006)
Q Consensus 262 ~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~ 341 (1006)
..+.+.+...+. +.+.+|+|||+++++++.+...+...+++.|++||.++++|+||++|++|..|+...
T Consensus 230 ~~~i~~l~~~l~-----------s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 230 NRIIEPLLNLLQ-----------SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHHHHhh-----------ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 345555555553 236799999999999999988899999999999999999999999999999999986
Q ss_pred CcHHHHHHhHHHhhhccc-CcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhh-cChHhHHHHHHHHHHHHhhcCCCh
Q 001845 342 DVHDIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLST-ADFAMREELSLKAAILAEKFAPDL 419 (1006)
Q Consensus 342 ~~~~~v~~~~~~i~~~L~-d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~-~d~~~~~~lv~~I~~laeky~~~~ 419 (1006)
+ ..+. |...++.++. |+|.+||++||++|+.+||++|++.|++||++|+.+ .|.+++++++.+|+.+|++|+++.
T Consensus 299 ~--~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~ 375 (526)
T PF01602_consen 299 P--PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA 375 (526)
T ss_dssp H--HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH
T ss_pred c--hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH
Confidence 2 4566 5555555655 999999999999999999999999999999999965 599999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCCh
Q 001845 420 SWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSP 499 (1006)
Q Consensus 420 ~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~ 499 (1006)
.||++++++++..+|+++.+++|..+.+++.++|+.+++++.++++++++...++ +.++++|++||||+.+.+. . .+
T Consensus 376 ~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~-~~~~~~wilGEy~~~~~~~-~-~~ 452 (526)
T PF01602_consen 376 EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPE-ALAAAIWILGEYGELIENT-E-SA 452 (526)
T ss_dssp HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHH-HHHHHHHHHHHHCHHHTTT-T-HH
T ss_pred HHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHH-HHHHHHhhhcccCCccccc-c-cH
Confidence 9999999999999999999999999999999999999999999999999854444 6788999999999998751 2 47
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHhcc
Q 001845 500 KEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYES--CIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 500 ~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~--s~d~EvqqRA~eyl~Ll~~ 571 (1006)
.++++.+.++|..+++.||+.+||+++|++.+.. ..+..+.+..++..+.. |.|+||||||+||++|++.
T Consensus 453 ~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~--~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 453 PDILRSLIENFIEESPEVKLQILTALAKLFKRNP--ENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC--chhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 8999999999999999999999999999998721 22677788888888877 9999999999999999874
No 5
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-73 Score=636.57 Aligned_cols=533 Identities=26% Similarity=0.461 Sum_probs=483.4
Q ss_pred CcHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCCCcCc
Q 001845 7 RGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPE 86 (1006)
Q Consensus 7 rgL~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~~~~~ 86 (1006)
|.|.+||+.||++ .++|++.|.+-+.+||++.+++ +.+.|..+++|+.|+.|+|+|++|.-|++++.|+|++|..
T Consensus 14 ksl~dlikgir~~--~~~e~~fis~~l~e~r~E~k~~---d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~ 88 (877)
T KOG1059|consen 14 KSLKDLIKGIRSH--KEDEEKFISQCLEEIRQELKSD---DLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQ 88 (877)
T ss_pred HhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHhhch---hhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHH
Confidence 6799999999997 4568889999999999999988 4668999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001845 87 KQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAAL 166 (1006)
Q Consensus 87 KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~l 166 (1006)
||+||++++.-++..+|+++|.+|+++||++|+|.+-.++||..|+++.+++++++|+++|+.+|. ++.|||||||++
T Consensus 89 krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~--sskpYvRKkAIl 166 (877)
T KOG1059|consen 89 KRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLN--SSKPYVRKKAIL 166 (877)
T ss_pred HHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHh--cCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996 689999999999
Q ss_pred HHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCcccc-ccCCCChhHHHHH
Q 001845 167 CLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYT-YYGIPSPWLQVKT 245 (1006)
Q Consensus 167 al~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~-~~~~~~pwlqvkl 245 (1006)
.++|+|.+|||.++ .-++++..-|+|+||||+.||+++++|+++.+|+.|..+.|.+ |. .....+.|..+|+
T Consensus 167 ~lykvFLkYPeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~f-----fkllttSsNNWmLIKi 239 (877)
T KOG1059|consen 167 LLYKVFLKYPEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLF-----YKLLVTSSNNWVLIKL 239 (877)
T ss_pred HHHHHHHhhhHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHH-----HHHHhccCCCeehHHH
Confidence 99999999999997 5679999999999999999999999999999999998888765 21 2345799999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHhh
Q 001845 246 MRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHL------DAEKEMMSQCIALLGKFI 319 (1006)
Q Consensus 246 LrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l------~~~~~l~~~~~~~L~~fL 319 (1006)
|+++..+.+- +|+..+++.+.+..++.+|. ..+++||||++++.. +.....++.|++.|+.|+
T Consensus 240 iKLF~aLtpl-EPRLgKKLieplt~li~sT~----------AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fi 308 (877)
T KOG1059|consen 240 LKLFAALTPL-EPRLGKKLIEPITELMESTV----------AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFI 308 (877)
T ss_pred HHHHhhcccc-CchhhhhhhhHHHHHHHhhH----------HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhh
Confidence 9999999997 89999999999988886552 579999999999875 234568999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcCh-
Q 001845 320 AVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADF- 398 (1006)
Q Consensus 320 ~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~- 398 (1006)
..+|+|+||+||-+|.+++..+| ++|+.|..-|+.||.|.|.|||.|||||||.|+|++|+.+||+.|+.|+..++.
T Consensus 309 edsDqNLKYlgLlam~KI~ktHp--~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t 386 (877)
T KOG1059|consen 309 EDSDQNLKYLGLLAMSKILKTHP--KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGT 386 (877)
T ss_pred hcCCccHHHHHHHHHHHHhhhCH--HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccch
Confidence 99999999999999999999875 789999999999999999999999999999999999999999999999999877
Q ss_pred HhHHHHHHHHHHHHh----hcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCC----
Q 001845 399 AMREELSLKAAILAE----KFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKP---- 470 (1006)
Q Consensus 399 ~~~~~lv~~I~~lae----ky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~---- 470 (1006)
.+|.+++.+|..+|- .|-.|++||+.++.+|....|..-+..|-+.++++..+.|.+|..++..+..+|.++
T Consensus 387 ~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~ 466 (877)
T KOG1059|consen 387 NYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAG 466 (877)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhcc
Confidence 999999999987763 456999999999999999999888899999999999999999999999999999865
Q ss_pred ch--h---hHHHHHHHhhhccccccccCCCCCChHHHHHHHH-hhCCCCChhHHHHHHHHHHHHHhhcCCCChh------
Q 001845 471 AI--H---ETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIH-EKLPTVSMSTVAILLSTYAKILMHTQPADPE------ 538 (1006)
Q Consensus 471 ~~--~---e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~-~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e------ 538 (1006)
.. + -.++.+++||+|||+..+.+ +.+.++.+. .++...+..+++..+.+++|+|+.|...+++
T Consensus 467 s~q~n~~l~eVL~AaaWi~GEyse~ven-----~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~ 541 (877)
T KOG1059|consen 467 SAQINSQLCEVLYAAAWILGEYSEFVEN-----PNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEG 541 (877)
T ss_pred chhhccchhHHHHHHHHHHHHHHHHhhC-----HHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhH
Confidence 11 1 24567799999999999988 788898665 5667899999999999999999998876543
Q ss_pred ---HHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc
Q 001845 539 ---LQNQIWAIFNKYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 539 ---~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
+...+...|+.+..+.|.|||.||.+.+.|++.
T Consensus 542 ~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~~ 577 (877)
T KOG1059|consen 542 IVSLVNLILSFLEQFSGSSDLEVQERASEVLELIRL 577 (877)
T ss_pred HHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHH
Confidence 345677788889999999999998888777764
No 6
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-63 Score=569.88 Aligned_cols=806 Identities=16% Similarity=0.207 Sum_probs=633.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCC-----CchHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHH
Q 001845 33 LGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDV-----DFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRL 107 (1006)
Q Consensus 33 l~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv-----~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~L 107 (1006)
+++.| .|++. .++++.+++.+.||+|+..+|+.+ ...||.+.||++|+|..+||++|+++..+..-..|+ ++
T Consensus 24 lqe~r-~fnes-pvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv-ii 100 (865)
T KOG1078|consen 24 LQEAR-TFNES-PVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV-II 100 (865)
T ss_pred HHHHH-hhcCC-CCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh-hh
Confidence 44567 89998 899999999999999999999764 588999999999999999999999999998887776 88
Q ss_pred HHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHH
Q 001845 108 AINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADR 187 (1006)
Q Consensus 108 viNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~ 187 (1006)
++++++||.+..++.+|+.|||.|+.|.+..|...+...+++++. +.++.|+..|++.-+|++..+.+.++ .|.+.
T Consensus 101 vtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaiv--d~~~avSsaalvss~hll~~~~~~vk--rw~ne 176 (865)
T KOG1078|consen 101 VTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIV--DKNPAVSSAALVSSYHLLPISFDVVK--RWANE 176 (865)
T ss_pred hhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHee--ccccccchHHHHHHhhhhcccHHHHH--HHHHh
Confidence 999999999999999999999999999999999999999999999 68999999999999999999999997 99999
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 001845 188 MAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEV 267 (1006)
Q Consensus 188 l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~ 267 (1006)
+.....+.|.+|+++|+.+++.|.+++.-...+++.++ .-+...+|+..+.++|+....... ++.....++++
T Consensus 177 iqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~------~~~~~~~~~A~~~lir~~~~~l~~-~~~~~s~~~~f 249 (865)
T KOG1078|consen 177 VQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKF------TRGSLKSPLAVCMLIRIASELLKE-NQQADSPLFPF 249 (865)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------ccccccchhHHHHHHHHHHHHhhh-cccchhhHHHH
Confidence 99999999999999999999999999887766666554 224567999999999999887764 44444457788
Q ss_pred HHHHHccCCcccccccCCChhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHH
Q 001845 268 LQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA-EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDI 346 (1006)
Q Consensus 268 l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~-~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~ 346 (1006)
++.++.+ + .-+|++||.+.++.+.. ....+..++..|+.|+++.+.-+||.++++|++++...| .+
T Consensus 250 l~s~l~~---------K--~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P--~~ 316 (865)
T KOG1078|consen 250 LESCLRH---------K--SEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP--QA 316 (865)
T ss_pred HHHHHhc---------h--hHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC--cc
Confidence 8888832 1 45999999999999976 455677799999999999999999999999999999877 46
Q ss_pred HHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHH
Q 001845 347 IKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVI 426 (1006)
Q Consensus 347 v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~l 426 (1006)
+..+..++..+..|.+.+|...|+.+|++.++++|++.+++.+-.|+.+.+++||...+.+|..||.+|+.....+++++
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHH
Q 001845 427 LQLIDKAGDF-VSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSI 505 (1006)
Q Consensus 427 l~ll~~~g~~-v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~ 505 (1006)
.++|+..|++ ....++..|+.++..+|+.++.++.+||++++||+.++-.++ ..+++|.-|....+ |..+++.
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~r-ILhlLG~EgP~a~~-----Pskyir~ 470 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVR-ILHLLGKEGPKAPN-----PSKYIRF 470 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHH-HHHHHhccCCCCCC-----cchhhHH
Confidence 9999999887 888999999999999999999999999999999999887666 67899998887655 8899999
Q ss_pred HHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc--hHHHHHhhhcCC
Q 001845 506 IHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRK--GAALMDILAEMP 583 (1006)
Q Consensus 506 l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~--~~~~~~vl~~mP 583 (1006)
++++...|+..+|+..++|++| |....+.+++.|..++++|..|.|.|+||||.+|++.+.. +++....-...+
T Consensus 471 iyNRviLEn~ivRaaAv~alaK----fg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~~~l~~ 546 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAK----FGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNYSGLFV 546 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHH----HhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 9999999999999999999999 6666788899999999999999999999999999999884 222221111112
Q ss_pred CCCccchhHhhhhhhcccchhHHHHHHHHhhhhhccchhcccccCCCCCCCCcccccccccCCCCCccccCCCccCCCCC
Q 001845 584 KFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKWDFDQSR 663 (1006)
Q Consensus 584 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 663 (1006)
-.+.-+..|..++...-....+.. . .+.-.++..++ .+...... ....|..
T Consensus 547 s~~~le~~l~~y~~~~~~~~fd~~--------------~---v~~~s~~~~~~-------~~~~~k~~----~~~~~~~- 597 (865)
T KOG1078|consen 547 SIPGLERSLVSYITGSFATPFDIK--------------S---VPVKSQAEEPA-------INLELKQT----LVKAPEK- 597 (865)
T ss_pred ccchhHHHHHHHhhccccccchhh--------------c---chhhccccccc-------cccccccc----ccCCCcc-
Confidence 222222233333311000010100 0 01000000000 00000000 0000000
Q ss_pred CCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccccccCCcCcccccccccCCcccccCCcCCCCchHHHHHhhhccCc
Q 001845 664 SSTSTSSPSPSPDLLGDLLGPLAIEGPPVAGESEQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDS 743 (1006)
Q Consensus 664 s~~~~~~~~~~~~~~~dl~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ll~~~~ 743 (1006)
...+..+.+++.+. + -|++..+|+..+++. | ..+++ .
T Consensus 598 ------~~~~~~d~~~~~l~-----~------i~~~~~lgpl~kSs~------~-----i~LTE--~------------- 634 (865)
T KOG1078|consen 598 ------EKIPKVDEYAAELA-----S------IPEFKALGPLFKSSR------P-----IELTE--P------------- 634 (865)
T ss_pred ------cCCCccchhHHHHh-----c------cchhhhcCccccccC------c-----ceecc--c-------------
Confidence 00111121111110 0 145566777765432 1 24554 1
Q ss_pred eeeecCCCeEEEEEEeEecceeEEEEEEeecCCCC-cceeEEEEeCCCceeEEeecCC-cccCCCCeeEEEEEEEecC--
Q 001845 744 GVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSP-LFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMNLR-- 819 (1006)
Q Consensus 744 GvlYe~~~lqI~~k~~~~~~~~~i~l~~~Nks~~~-lt~f~~~~~~p~~l~~~~~~~~-~tI~p~~q~q~~v~v~~~~-- 819 (1006)
|.++...++||.|..| ..++|.+.|+..++ |.++.++...|.++..- .-+| .+|+.++..+...-+.-.+
T Consensus 635 ----e~e~~v~~vKh~f~~~-~V~qf~~~Ntl~d~~L~~v~vv~~~~~~~evl-~~i~~~slpy~qp~~~~tl~~~p~~~ 708 (865)
T KOG1078|consen 635 ----EAEYVVKVVKHVFKDH-VVLQFDCTNTLNDQLLENVSVVLTPTGGEEVL-EKVPTMSLPYDQPGSAFTLVEFPKDD 708 (865)
T ss_pred ----cceEEeeeeehhhccc-eEEEEeccCcchHHHHhhheeeecCCCCceee-eeccccCCCCCCCcceEEEEEcCCCC
Confidence 1467777889999888 88999999999887 99999988887775443 4455 7888887766666655431
Q ss_pred CCC--CCcEEEEEEee------CC------ceEEEEec-cCceeecccccccCChhhHHHHhhhcCCCCcceeEeec-CC
Q 001845 820 PSR--DVAVLDFSYKF------NT------NMVNVKLR-LPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVR-GV 883 (1006)
Q Consensus 820 ~~~--~~P~l~i~y~~------~g------~~~~~~Lk-lPi~~~kf~~p~~~~~~~F~~rW~~i~~~~~E~~~~~~-~~ 883 (1006)
|.. +.-...+.|++ .| ...+|.|+ |.+.+.+|++|+- ..+|-..|+.+| .|..++|. +.
T Consensus 709 p~~v~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~--k~NF~aawde~~---~e~eetF~Ls~ 783 (865)
T KOG1078|consen 709 PWAIAEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVR--KSNFPAAWDELG---FEAEETFNLST 783 (865)
T ss_pred chhhhccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhh--cccchhhHHhcC---cchheeeeccc
Confidence 111 12233344443 24 35689999 9999999999986 679999999999 35556776 44
Q ss_pred CCCCHHHHHHHHhccceEEecCCCCCCCc-----EEEEEEEeecCCCceeEEEEEeeCcc-cCceEEEEEEeCCCchHHH
Q 001845 884 RPMPLLEMANLFNSCHLIVCPGLDPNPNN-----LVASTTFYSESTRAMLCLTRIETDPA-DRTQLRMTVASGDPTLTFE 957 (1006)
Q Consensus 884 ~~~~~~~~~~~l~~~g~~v~~~~d~~~~n-----~~~aGi~~~~~~g~~~~Lvrie~~~~-~~~~~ritvRs~~~~ls~~ 957 (1006)
...-.+++.+++.-+||++|+++|.+|.| ++++|+|. |++-+|+|..+-.. +++.+++||||.++.+++.
T Consensus 784 ~~tl~eAv~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~fr----gG~~vlvr~~ma~s~~~vtm~Vtvrs~e~~~vd~ 859 (865)
T KOG1078|consen 784 VKSIQEAVKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFR----GGYKVLVRAKMALSSGGITMKVTVRSEDELVVDL 859 (865)
T ss_pred cchHHHHHHHHHHHhCCccccccccCCCCCCceEEEEeeeee----CCceEEEeeeeeecCCCcEEEEEEecCCccHHHH
Confidence 44467889999999999999999866654 49999999 88999999998442 3379999999999999888
Q ss_pred HHHHH
Q 001845 958 LKEFI 962 (1006)
Q Consensus 958 i~~~i 962 (1006)
|...+
T Consensus 860 Iva~v 864 (865)
T KOG1078|consen 860 IVALV 864 (865)
T ss_pred HHHhc
Confidence 87653
No 7
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-59 Score=528.45 Aligned_cols=516 Identities=17% Similarity=0.246 Sum_probs=444.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHH
Q 001845 34 GNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVR 113 (1006)
Q Consensus 34 ~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~ 113 (1006)
+++++.+.+.+ ...|.++++++|.+++.|.|++..|.+|||.++|++.+.||++|+|+-.|+++++|+++|.||++|
T Consensus 38 ~dL~~lLdSnk---d~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQ 114 (968)
T KOG1060|consen 38 DDLKQLLDSNK---DSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQ 114 (968)
T ss_pred HHHHHHHhccc---cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHH
Confidence 46777777653 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhc
Q 001845 114 NDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLD 193 (1006)
Q Consensus 114 KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~ 193 (1006)
|+|.|+|+.+||-|||+|++|+.+-+++.+...|+++.+ |.+|||||.||+|+.|+|+..|+.-. ++.+.|..||.
T Consensus 115 k~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~--D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLa 190 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVT--DPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLA 190 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc--CCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhc
Confidence 999999999999999999999999999999999999998 78999999999999999999999885 88999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcCh----hhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCC--Chhh-------
Q 001845 194 ERDLGVLTSSMSLLVALVSNNH----EAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVE--DPNT------- 260 (1006)
Q Consensus 194 d~d~~V~~~a~~ll~~I~~~~~----~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~--d~~~------- 260 (1006)
|+++.|+.+|+.++.++|+++- ++|++++..+ ...++|.|+.++..|.+|++.. +|..
T Consensus 191 D~splVvgsAv~AF~evCPerldLIHknyrklC~ll---------~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~ 261 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLL---------PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLED 261 (968)
T ss_pred CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhc---------cchhhhhHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 9999999999999999999884 4688777543 2359999999999999997631 1100
Q ss_pred --------------HH--HHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCC
Q 001845 261 --------------RR--SLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREP 324 (1006)
Q Consensus 261 --------------~~--~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~ 324 (1006)
.. .+..-+..+|+++ .+-++++|+ +|++.+++++.++.+..+ ....+.+|.++|. +..
T Consensus 262 n~~~~~~~~~~~~~~~P~~~d~D~~lLL~st--kpLl~S~n~--sVVmA~aql~y~lAP~~~-~~~i~kaLvrLLr-s~~ 335 (968)
T KOG1060|consen 262 NGRSCNLKDKYNEIRTPYVNDPDLKLLLQST--KPLLQSRNP--SVVMAVAQLFYHLAPKNQ-VTKIAKALVRLLR-SNR 335 (968)
T ss_pred CcccccccccccccCCCcccCccHHHHHHhc--cHHHhcCCc--HHHHHHHhHHHhhCCHHH-HHHHHHHHHHHHh-cCC
Confidence 00 0111233334333 245678888 999999999999998654 4667888888774 567
Q ss_pred chhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHH
Q 001845 325 NIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREEL 404 (1006)
Q Consensus 325 nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~l 404 (1006)
..||++|+++..|+...+ ..|.+|...||.+-.|+ .-|+..||++|..|+|++|+..|++||..|+...|.+|....
T Consensus 336 ~vqyvvL~nIa~~s~~~~--~lF~P~lKsFfv~ssDp-~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 336 EVQYVVLQNIATISIKRP--TLFEPHLKSFFVRSSDP-TQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred cchhhhHHHHHHHHhcch--hhhhhhhhceEeecCCH-HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHH
Confidence 999999999999998765 46999999977665554 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHH-HHhh
Q 001845 405 SLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKV-SAYL 483 (1006)
Q Consensus 405 v~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~-~~wi 483 (1006)
|.+|++||.+--.....|++.|++|++.....|..+.+..|..++.++|-.|...+.+|...++... .+..|+ ++|+
T Consensus 413 V~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~--vp~ARA~IiWL 490 (968)
T KOG1060|consen 413 VKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTIL--VPAARAGIIWL 490 (968)
T ss_pred HHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhh--hhhhhceeeee
Confidence 9999999998888888999999999999888899999999999999999999999999999886532 333454 4899
Q ss_pred hccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHH
Q 001845 484 LGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAV 563 (1006)
Q Consensus 484 lGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~ 563 (1006)
+|||...+.. + ..|++|.+.+.|..|.++||.+||...+|||+. +. .+.+..+..+|+...+|.++|+||||+
T Consensus 491 ige~~e~vpr---i-~PDVLR~laksFs~E~~evKlQILnL~aKLyl~--~~-~~~kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 491 IGEYCEIVPR---I-APDVLRKLAKSFSDEGDEVKLQILNLSAKLYLT--NI-DQTKLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred ehhhhhhcch---h-chHHHHHHHHhhccccchhhHHHHHhhhhheEe--ch-hhHHHHHHHHHHHhccCCCcchhHHHH
Confidence 9999998754 4 569999999999999999999999999999865 33 346777899999999999999999999
Q ss_pred HHHHHhcchH-----HHHHhhhcCC
Q 001845 564 EYFALSRKGA-----ALMDILAEMP 583 (1006)
Q Consensus 564 eyl~Ll~~~~-----~~~~vl~~mP 583 (1006)
++..|+.... ..+.+++..|
T Consensus 564 F~r~l~~~~~~Ls~h~~ei~l~~Kp 588 (968)
T KOG1060|consen 564 FLRQLISPLEALSKHAREIFLASKP 588 (968)
T ss_pred HHHHHhccHHHHHHHHHHHhhccCC
Confidence 9999998633 3455666664
No 8
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-59 Score=535.20 Aligned_cols=526 Identities=20% Similarity=0.293 Sum_probs=454.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHH
Q 001845 30 DKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAI 109 (1006)
Q Consensus 30 ~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~Lvi 109 (1006)
..|+.++|+.+.+. ..++||.+++|+|.-+..|.|++..|+++++.+++.|.+.|||+|||++.|+..+|+.+++++
T Consensus 12 k~ei~elks~l~s~---~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~av 88 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQ---SKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAV 88 (734)
T ss_pred hhhchHHHHHhhhh---hhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhh
Confidence 56888999999654 347899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHH
Q 001845 110 NTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMA 189 (1006)
Q Consensus 110 Nsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~ 189 (1006)
|++.||..++||.+|++|+|+++.++.+.+.+++...+.++++ |.+|||||+|++|+.++|+.+|+.+....+.+.+.
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 9999999999999999999999999999999999999999998 78999999999999999999999998889999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHhcChhh-hhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 001845 190 QLLDERDLGVLTSSMSLLVALVSNNHEA-YWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVL 268 (1006)
Q Consensus 190 ~lL~d~d~~V~~~a~~ll~~I~~~~~~~-~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l 268 (1006)
.++.|.||+|+.+|++++.+|...++.. ...+.+.+ ...--...+-+++|.|+-+|..+..|.+. |... ..+++
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~-~~~lL~al~ec~EW~qi~IL~~l~~y~p~-d~~e---a~~i~ 241 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQL-INKLLEALNECTEWGQIFILDCLAEYVPK-DSRE---AEDIC 241 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHH-HHHHHHHHHHhhhhhHHHHHHHHHhcCCC-Cchh---HHHHH
Confidence 9999999999999999999999888741 11111100 00000122347999999999999999987 4332 33666
Q ss_pred HHHHccCCcccccccCCChhHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc
Q 001845 269 QRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAE-----KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDV 343 (1006)
Q Consensus 269 ~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~-----~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~ 343 (1006)
+++. +.++|.|+ +|+..++++++++... ..+..+...+|..++++ ++++.|++|+++..+.++.|.
T Consensus 242 ~r~~------p~Lqh~n~--avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 242 ERLT------PRLQHANS--AVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHhh------hhhccCCc--ceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChH
Confidence 6554 56788898 9999999999986431 35666777777777654 449999999999999998763
Q ss_pred HHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHH
Q 001845 344 HDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYV 423 (1006)
Q Consensus 344 ~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~v 423 (1006)
+.++...+|+|-+++++|||..||+++..++|.+|+.+|+.||..|..+.|.+|.++.|++|+.+|.|+... +-||
T Consensus 313 ---~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv 388 (734)
T KOG1061|consen 313 ---ILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCV 388 (734)
T ss_pred ---HHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhH
Confidence 555677889999999999999999999999999999999999999999999999999999999999999876 7799
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHH-HHhhhccccccccCCCCCChHHH
Q 001845 424 DVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKV-SAYLLGEYSHLLARRPGCSPKEI 502 (1006)
Q Consensus 424 d~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~-~~wilGEyg~~i~~~~~~~~~~~ 502 (1006)
++++++++...+|+.+|++..|.++.+.+|...+..+..++..++.- .++-.|. .+||+|||++.+++ ..++
T Consensus 389 ~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl--~epeak~amiWilg~y~~~i~~-----a~el 461 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSL--QEPEAKAALIWILGEYAERIEN-----ALEL 461 (734)
T ss_pred HHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccccccc--CChHHHHHHHHHHhhhhhccCc-----HHHH
Confidence 99999999999999999999999999999998887777777666532 2222333 48999999999998 6799
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHhcc--hHHHHHhh
Q 001845 503 FSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYE-SCIEVEIQQRAVEYFALSRK--GAALMDIL 579 (1006)
Q Consensus 503 ~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~-~s~d~EvqqRA~eyl~Ll~~--~~~~~~vl 579 (1006)
++.|.+.|..+..+||..+|||.+|+|.+. ..+.++.+..++..+. .+.++|+|||+..||++++. ..+.+.++
T Consensus 462 L~~f~en~~dE~~~Vql~LLta~ik~Fl~~---p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v~~ 538 (734)
T KOG1061|consen 462 LESFLENFKDETAEVQLELLTAAIKLFLKK---PTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDVVL 538 (734)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHhcC---CccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCHHHHHHHHh
Confidence 999999999999999999999999998773 3478899999999997 67778999999999999997 24566788
Q ss_pred hcCCCCCcc
Q 001845 580 AEMPKFPER 588 (1006)
Q Consensus 580 ~~mP~~~~~ 588 (1006)
.++|.....
T Consensus 539 ~~kP~is~~ 547 (734)
T KOG1061|consen 539 AEKPLISEE 547 (734)
T ss_pred cCCCccccC
Confidence 999887653
No 9
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.1e-46 Score=407.89 Aligned_cols=522 Identities=13% Similarity=0.131 Sum_probs=446.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCC-----CchHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHH
Q 001845 33 LGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDV-----DFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRL 107 (1006)
Q Consensus 33 l~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv-----~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~L 107 (1006)
+++.++.|++. .++.+.+++.+.||.|+...|.-. ...|+.+.||++++|..+|+.+|+++..+..-..|+ +|
T Consensus 24 ~qd~~~sfn~S-pvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-lm 101 (898)
T COG5240 24 LQDMNESFNKS-PVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-LM 101 (898)
T ss_pred HHHHHHHhccC-CCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh-hH
Confidence 45668899988 899999999999999999999864 578999999999999999999999999998887776 88
Q ss_pred HHHHHHhhcCCCCh-hHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHH
Q 001845 108 AINTVRNDIIGRNE-TFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWAD 186 (1006)
Q Consensus 108 viNsl~KDL~s~n~-~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~ 186 (1006)
.||+|+||++...| .++..|+|.|-.+.+.+++.+....+.+.++| .++-+|..|+...+|+|-.+-+.++ .|.+
T Consensus 102 ~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs--~~~a~~saalv~aYhLlp~~~~~~~--rw~n 177 (898)
T COG5240 102 GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVS--TSMARRSAALVVAYHLLPNNFNQTK--RWLN 177 (898)
T ss_pred HHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccc--cchhhhhhHHHHhhhhccccHHHHH--HHHH
Confidence 99999999999877 89999999999999999999999999999994 6788999999999999988878876 8998
Q ss_pred HHHhhhcC----------------CChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHh
Q 001845 187 RMAQLLDE----------------RDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQ 250 (1006)
Q Consensus 187 ~l~~lL~d----------------~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~ 250 (1006)
+.++..-| .++.-.++|+.+|+.+.+++.-...+++.++.- -..+.+...-+.++|...
T Consensus 178 e~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~-----n~smknq~a~V~lvr~~~ 252 (898)
T COG5240 178 ETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRG-----NASMKNQLAGVLLVRATV 252 (898)
T ss_pred HHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhc-----ccccccchhheehHHHHH
Confidence 88876533 245678999999999998875544444433300 113446666677777777
Q ss_pred cCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhhcCCCCchh
Q 001845 251 YFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA---EKEMMSQCIALLGKFIAVREPNIR 327 (1006)
Q Consensus 251 ~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~---~~~l~~~~~~~L~~fL~s~~~nir 327 (1006)
.+... ++.....|+.+|...+.+ -.-+|.+|+.+.++.+.. .+++...++..|..||.+...-.|
T Consensus 253 ~ll~~-n~q~~~q~rpfL~~wls~-----------k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 253 ELLKE-NSQALLQLRPFLNSWLSD-----------KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHh-ChHHHHHHHHHHHHHhcC-----------cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHH
Confidence 66554 777777888888888832 245999999999999643 468899999999999999999999
Q ss_pred HHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHH
Q 001845 328 YLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLK 407 (1006)
Q Consensus 328 ylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~ 407 (1006)
|.|++.|.+|+...|. .|.-+...+..++.|.+.+|..-|+..|++.++++|++.+++.+-.|+.+..+.||.-++.+
T Consensus 321 FsA~Riln~lam~~P~--kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida 398 (898)
T COG5240 321 FSAMRILNQLAMKYPQ--KVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDA 398 (898)
T ss_pred HHHHHHHHHHHhhCCc--eeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHH
Confidence 9999999999998873 56667788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhcc
Q 001845 408 AAILAEKFAPDLSWYVDVILQLIDKAGDF-VSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGE 486 (1006)
Q Consensus 408 I~~laeky~~~~~w~vd~ll~ll~~~g~~-v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGE 486 (1006)
|..|+.+||.....|++++...|...|++ ....+++.|.+++.+.|+.+|.|+..||++++||++++-.++ +..|||+
T Consensus 399 ~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vr-IL~iLG~ 477 (898)
T COG5240 399 LRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVR-ILGILGR 477 (898)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHH-HHHHhcc
Confidence 99999999999999999999999988887 889999999999999999999999999999999999997777 6789999
Q ss_pred ccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 001845 487 YSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYF 566 (1006)
Q Consensus 487 yg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl 566 (1006)
-|....+ |..+++.+++|...++..+|+..+.|+.|.-.. ..++-....|..++++|.+|.|.||||||.+.+
T Consensus 478 EgP~a~~-----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln--~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 478 EGPRAKT-----PGKYVRHIYNRLILENNIVRSAAVQALSKFALN--ISDVVSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred cCCCCCC-----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccC--ccccccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 9987655 889999999999999999999999999993322 234556778999999999999999999999999
Q ss_pred HHhcchHHHHHhh--hcCCCCCc
Q 001845 567 ALSRKGAALMDIL--AEMPKFPE 587 (1006)
Q Consensus 567 ~Ll~~~~~~~~vl--~~mP~~~~ 587 (1006)
+-++..+....++ +++|-+|.
T Consensus 551 ~~~~~~da~~pl~~sd~~~dips 573 (898)
T COG5240 551 RNMRLSDACEPLFSSDELGDIPS 573 (898)
T ss_pred HhhhhhhhhhccccccccCCcch
Confidence 9888643332222 34454443
No 10
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-44 Score=405.38 Aligned_cols=809 Identities=16% Similarity=0.220 Sum_probs=546.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHH-hccCCCcCchhhhHHHHHhhcccCh-----hHHHH
Q 001845 34 GNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVS-LISAPKYPEKQVGYIVTSCLLNENH-----DFLRL 107 (1006)
Q Consensus 34 ~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~-L~~S~~~~~KrlgYL~l~~l~~~~~-----e~~~L 107 (1006)
.+|+++|.++ +.++|.+.++|+|+.++.|++++..+|++++ .+.|.+.++||+-|.|+.++-+.++ +.++|
T Consensus 23 ~~ik~~Lek~---~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMIL 99 (948)
T KOG1058|consen 23 DEIKEKLEKG---DDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMIL 99 (948)
T ss_pred HHHHHHHhcC---ChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHH
Confidence 3678899887 6889999999999999999999999999998 8999999999999999999987765 35799
Q ss_pred HHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHH
Q 001845 108 AINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADR 187 (1006)
Q Consensus 108 viNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~ 187 (1006)
++|.++|||++|||++||..|||+|.+..+|+.+.+.|.|..+|. |.++||||.|++|+..+|+..-++++ +..+.
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~Iracle--HrhsYVRrNAilaifsIyk~~~~L~p--DapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLE--HRHSYVRRNAILAIFSIYKNFEHLIP--DAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHh--CcchhhhhhhheeehhHHhhhhhhcC--ChHHH
Confidence 999999999999999999999999999999999999999999997 89999999999999999999877775 66777
Q ss_pred HHhhh-cCCChhHHHHHHHHHHHHHhcChhhhh-ccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHH
Q 001845 188 MAQLL-DERDLGVLTSSMSLLVALVSNNHEAYW-SCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLF 265 (1006)
Q Consensus 188 l~~lL-~d~d~~V~~~a~~ll~~I~~~~~~~~~-~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~ 265 (1006)
+...| .|.|+.+.-+|+-.|..+.+.+...|. .++.++ ...++-+|..++.+++.-+.. .|......+
T Consensus 176 i~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi---------~~~~~~LqlViVE~Irkv~~~-~p~~~~~~i 245 (948)
T KOG1058|consen 176 IESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQI---------PSFNDSLQLVIVELIRKVCLA-NPAEKARYI 245 (948)
T ss_pred HHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhc---------cCccHHHHHHHHHHHHHHHhc-CHHHhhHHH
Confidence 88877 599999999999999888776655553 344332 134889999999999988774 677777777
Q ss_pred HHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcH
Q 001845 266 EVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVH 344 (1006)
Q Consensus 266 ~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~ 344 (1006)
+++-.+|+++ +.+|.|||.-++..+.+.+.+++.+.+.+..++. .+|+|++.+.|+.|..+...+.
T Consensus 246 ~~i~~lL~st-----------ssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~-- 312 (948)
T KOG1058|consen 246 RCIYNLLSST-----------SSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE-- 312 (948)
T ss_pred HHHHHHHhcC-----------CchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH--
Confidence 8888788553 3499999999999999999999999999988775 6899999999999999986543
Q ss_pred HHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhc-------ChHhHHHHHHHHHHHHhhcCC
Q 001845 345 DIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTA-------DFAMREELSLKAAILAEKFAP 417 (1006)
Q Consensus 345 ~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~-------d~~~~~~lv~~I~~laeky~~ 417 (1006)
..++....+|+..|..+|..+|+++|++.+.++...|+++||.-|.+-+.+. ...+|..++.+|..+|.+||.
T Consensus 313 ~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 313 KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 5788999999999999999999999999999999999999999998866532 347999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCC---
Q 001845 418 DLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARR--- 494 (1006)
Q Consensus 418 ~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~--- 494 (1006)
-..-.|..+++.+......-..+++.-+...+...|+++...+.++.+.+..-...+ ..+.++||+|||..-..+.
T Consensus 393 ~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~k-i~rgalwi~GeYce~~~~i~~~ 471 (948)
T KOG1058|consen 393 VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSK-ICRGALWILGEYCEGLSEIQSV 471 (948)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccc-cchhHHHHHHHHHhhhHHHHHH
Confidence 999999999999988877777788888899999999999999999998886543332 3456799999997654420
Q ss_pred -----------CCCChHHHHHHH-----------------------H-------hhCC--------CCChhHHHHHHH--
Q 001845 495 -----------PGCSPKEIFSII-----------------------H-------EKLP--------TVSMSTVAILLS-- 523 (1006)
Q Consensus 495 -----------~~~~~~~~~~~l-----------------------~-------~~~~--------~~s~~tr~~iLt-- 523 (1006)
|-+ ..++.+.. . ..|. .+-+.-|..+|+
T Consensus 472 ~k~i~~slGEvp~~-~sei~~~~~~~~~e~~~~~~s~~~~~~~~v~~dGTYAteSA~s~~~~~~~~~~rp~lrr~ll~Gd 550 (948)
T KOG1058|consen 472 IKIIRQSLGEVPIV-CSEIERLHGEQTKEIELTSSSAPSSTKPKVLADGTYATESAFSSSSPTVKEADRPSLRRFLLTGD 550 (948)
T ss_pred HHHHHHhcccccee-hHHHhhhhcccccccccccccccccCCCeeecCccchhhhhhcccccchhhccchHHHHHhhcch
Confidence 000 00111111 0 0011 111223444443
Q ss_pred ---------HHHHHHhhcCCCC-h-----hHHHHH----HHHHHHh-----ccCCChHHHHHHHHHHHHhcc--hHHHHH
Q 001845 524 ---------TYAKILMHTQPAD-P-----ELQNQI----WAIFNKY-----ESCIEVEIQQRAVEYFALSRK--GAALMD 577 (1006)
Q Consensus 524 ---------a~~Kl~~~~~~~~-~-----e~~~~v----~~vl~~~-----~~s~d~EvqqRA~eyl~Ll~~--~~~~~~ 577 (1006)
++.|+..||.... + .++..+ ..+++.. .+-.|.|=++|-.-..+++-. +++-..
T Consensus 551 fflgA~la~tLtKl~lr~~~l~~~k~~~N~~~aea~lIM~sii~lGkS~~~~~~Id~Ds~erI~~cIr~L~~~~p~~~~~ 630 (948)
T KOG1058|consen 551 FFLGAVLAITLTKLVLRFEELEGPKTRQNALKAEALLIMVSIIHLGKSSFVSKTIDNDSLERIMLCIRILVSRNPEMNSQ 630 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHhccccCCCCCcCcchHHHHHHHHHHHHhhChHHHHH
Confidence 6777776643211 1 112211 1222221 244666677777777666643 222221
Q ss_pred hhhcCCCCCccchhHhhhhhhcccchhHHHHHHHHhhhhhccchhcccccCCCCCCCCcccccccccCCCCCccccCCCc
Q 001845 578 ILAEMPKFPERQSSLIKKAEDVEVDTAEQSAIKLRAQQQQTSTALVVADQSSANGTSPVNQLGLVKVPSMSSSVIYSSKW 657 (1006)
Q Consensus 578 vl~~mP~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 657 (1006)
-++.+ |+ ++.+.+..+..... ...-.... + ....+ +|.+....-.++.
T Consensus 631 f~~~c-----r~-s~~~m~~~~~~~~~-----------~~~~~~~~----~-~~~~~----ddpI~f~q~~~~~------ 678 (948)
T KOG1058|consen 631 FLDDC-----RQ-SFEKMIDAKKKRRK-----------EELLKKSQ----K-TTAQP----DDPINFRQLRSGR------ 678 (948)
T ss_pred HHHHH-----HH-HHHHHhhHHHHHHH-----------HHHHhhhc----c-ccCCC----CCccchHhhcccc------
Confidence 11211 11 11111111110000 00000000 0 00000 0111111100000
Q ss_pred cCCCCCCCCCCCCCCCCCCcc-ccccCCCCCCCCCCCCCCccccccCCcCcccccccccCCcccccCCcCCCCchHHHHH
Q 001845 658 DFDQSRSSTSTSSPSPSPDLL-GDLLGPLAIEGPPVAGESEQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFH 736 (1006)
Q Consensus 658 ~~~~~~s~~~~~~~~~~~~~~-~dl~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 736 (1006)
| . .-..+.. .||..-.+ .++-. .-| +| .+ .....++..+ |
T Consensus 679 ------s-----~-~~~en~fe~~L~~A~g-~~~~~--------~~~----s~-~s--------KL~kV~QLtG----f- 719 (948)
T KOG1058|consen 679 ------S-----D-ERGENQFEEDLVQATG-DAQKA--------EDG----SP-AS--------KLNKVTQLTG----F- 719 (948)
T ss_pred ------h-----h-hhhhhHHHHHHHHHhc-ccccc--------ccC----Cc-HH--------HhhceeeccC----C-
Confidence 0 0 0000000 01110000 00000 000 00 00 0000111000 0
Q ss_pred hhhccCceeeecCCCeEEEEEEeEecceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCCcccCCCCeeEEEEEEE
Q 001845 737 ALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVM 816 (1006)
Q Consensus 737 ~ll~~~~GvlYe~~~lqI~~k~~~~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~~tI~p~~q~q~~v~v~ 816 (1006)
+--+|--.|+. ++...+.+.+.+.|.+...+.|++++++.-..+++...|.|-++.|+...+....|.
T Consensus 720 ------SDPVYaEAyv~------vnqyDIVLDvL~VNqT~~tLQNl~lelATlgdLKlve~p~p~~Laph~f~~ikatvK 787 (948)
T KOG1058|consen 720 ------SDPVYAEAYVT------VNQYDIVLDVLLVNQTKETLQNLSLELATLGDLKLVERPTPFSLAPHDFVNIKATVK 787 (948)
T ss_pred ------CCCeeeEEEee------eeeeeEEEEEEEecCChHHHhhheeeeeeccCceeeecCCCcccCcccceeEEEEEE
Confidence 00122222221 244559999999999999999999999887789988778888899998777777777
Q ss_pred ecCCCCCCcEEEEEEeeCC---ceEEEEec-cCceeecccccccCChhhHHHHhhhcCCCCcceeEeecCCCCCCHHHHH
Q 001845 817 NLRPSRDVAVLDFSYKFNT---NMVNVKLR-LPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMA 892 (1006)
Q Consensus 817 ~~~~~~~~P~l~i~y~~~g---~~~~~~Lk-lPi~~~kf~~p~~~~~~~F~~rW~~i~~~~~E~~~~~~~~~~~~~~~~~ 892 (1006)
+...-...-..++.|...| ..+...|. ++|.+-+|++|..++.++|++.|+.+.- ++++. ++...+...+.+.
T Consensus 788 VsStenGvIfGnIvY~~~~~a~~~~~VvLndIhidImDYI~Pa~~~d~~FRtmW~efEW-ENKvt--v~t~~~~L~e~l~ 864 (948)
T KOG1058|consen 788 VSSTENGVIFGNIVYDTSEAANDRNVVVLNDIHIDIMDYIKPAKCDDDEFRTMWAEFEW-ENKVT--VNTTIKTLREFLG 864 (948)
T ss_pred EeeccCcEEEEEEEecCccccccceEEEeccccccHHHhcCCCcCChHHHHHHHHHhhh-cceee--eccccccHHHHHH
Confidence 6543334445567787743 23456777 8999999999999999999999998873 44443 3333332445577
Q ss_pred HHHhccceEEecCCCCCC-------CcEEEEEEEeecCCCceeEEEEEeeC---cccCceEEEEEEeCCCchHHHHHHHH
Q 001845 893 NLFNSCHLIVCPGLDPNP-------NNLVASTTFYSESTRAMLCLTRIETD---PADRTQLRMTVASGDPTLTFELKEFI 962 (1006)
Q Consensus 893 ~~l~~~g~~v~~~~d~~~-------~n~~~aGi~~~~~~g~~~~Lvrie~~---~~~~~~~ritvRs~~~~ls~~i~~~i 962 (1006)
.++.+.+|.++.....-. .|+++.++|- .-+|+-+... +.+.+..-+.+||-..|++--+-+-+
T Consensus 865 ~i~kstNmkcLtpe~al~g~CgFlaaNlya~Sifg------edALaNvsieK~~~~~~v~g~iRIRsK~QGialSLgdkv 938 (948)
T KOG1058|consen 865 HISKSTNMKCLTPEAALDGDCGFLAANLYAKSIFG------EDALANVSIEKSSDGGPVSGHIRIRSKTQGIALSLGDKV 938 (948)
T ss_pred HHHhhcCCcccCchhhccCccchhhhhHHHHhhcc------chhheeeeeeccCCCCCceEEEEEEecccceeeeHHHHH
Confidence 788999998887532222 2445554443 2234433332 22234556667777777666665555
Q ss_pred HHHh
Q 001845 963 KEQL 966 (1006)
Q Consensus 963 ~~~l 966 (1006)
....
T Consensus 939 ~~~~ 942 (948)
T KOG1058|consen 939 GLVQ 942 (948)
T ss_pred HHHH
Confidence 4443
No 11
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-44 Score=427.10 Aligned_cols=538 Identities=19% Similarity=0.272 Sum_probs=424.9
Q ss_pred CCCCcHHHHHHHhhCCCChHHHHHHHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCC
Q 001845 4 SGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTR-FKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAP 82 (1006)
Q Consensus 4 ~~mrgL~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~-f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~ 82 (1006)
..|.-+.++++.-|+.. ++++.|.- +.+. +.++|+++++|+|..|+.|+|++..|++|+|.+.+.
T Consensus 2 ~~~S~~~~~~~~~~~~~-----------~~~~~~sg~l~s~---n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~tr 67 (757)
T COG5096 2 RIMSAFKDSIRKARNAD-----------SVAALSSGRLESS---NDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATR 67 (757)
T ss_pred cchhHHHHHHhhhccch-----------HHhhhcccccccc---ChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Confidence 34555666676666542 56666654 4444 588999999999999999999999999999999999
Q ss_pred CcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHH
Q 001845 83 KYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRK 162 (1006)
Q Consensus 83 ~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRK 162 (1006)
|.+.||+.|+|+..|.+.+|++++|++|+++||++|+||++||+|||+++.++.+++++.+++.|++++. |.++||||
T Consensus 68 d~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~--d~~ayVRk 145 (757)
T COG5096 68 DVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLT--DPHAYVRK 145 (757)
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc--CCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred HHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhh----hccCCCCCCCccccccCCCC
Q 001845 163 KAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAY----WSCLPKCDVPQEYTYYGIPS 238 (1006)
Q Consensus 163 kA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~----~~~v~~l~~~~ey~~~~~~~ 238 (1006)
+|++|+.++|+.+++.+...+....+..++.|.||-|+.+|+..+.+|.......| ...++++.... .....
T Consensus 146 ~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~----~~~~~ 221 (757)
T COG5096 146 TAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLS----LSVST 221 (757)
T ss_pred HHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchh----hhhhH
Confidence 99999999999999999855588999999999999999999999999998743333 23344431111 11225
Q ss_pred hhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCC---cHHHHHHHHHHH
Q 001845 239 PWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA---EKEMMSQCIALL 315 (1006)
Q Consensus 239 pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~---~~~l~~~~~~~L 315 (1006)
+|+..-++..|..+.+. ++.... .+.+.+ ....+|.|+ .|+.-+++.++.+.. ...+....-++|
T Consensus 222 ~~~~~~~le~L~~~~~~-~~~s~~---~~~~~~------~~~~~~~n~--~vl~~av~~i~~l~~~~~~~~~~~~~~~~l 289 (757)
T COG5096 222 EWLLLIILEVLTERVPT-TPDSAE---DFEERL------SPPLQHNNA--EVLLIAVKVILRLLVFLPSNNLFLISSPPL 289 (757)
T ss_pred HHHHHHHHHHHHccCCC-CCCcHH---HHHHhc------cchhhhCcH--HHHHHHHHHHHHHhhhhccccHHHhhccHH
Confidence 99999999999887765 333222 222221 133467777 889999999887643 333566667778
Q ss_pred HHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhh
Q 001845 316 GKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLST 395 (1006)
Q Consensus 316 ~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~ 395 (1006)
..++...+.-+.|+.......+....+ ....+...++.|-+++|.+++..++++++.+.+.+|...++.|+..|+..
T Consensus 290 ~~Ll~~~~~~~~~vl~~~~~~~l~~~~---k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~ 366 (757)
T COG5096 290 VTLLAKPESLIQYVLRRNIQIDLEVCS---KLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAE 366 (757)
T ss_pred HHHHcCCHHHHHHHHHHhhHHHHHhhH---HHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhh
Confidence 877766667888888887777777653 34567788899999999999999999999999999999999999999999
Q ss_pred --cChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH---hcCCcchHHH-----HHHHH---HHHh---cC-CCcHHH
Q 001845 396 --ADFAMREELSLKAAILAEKFAPDLSWYVDVILQLID---KAGDFVSDDI-----WFRVV---QFVT---NN-EDLQPY 458 (1006)
Q Consensus 396 --~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~---~~g~~v~~ei-----~~~i~---~ii~---~~-~~l~~~ 458 (1006)
.|.++.++++..|+.++-+.+....-||+.++.+++ ..|+|+..|+ |..+. .+++ +. ++++..
T Consensus 367 ~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~ 446 (757)
T COG5096 367 NHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLR 446 (757)
T ss_pred ccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHH
Confidence 899999999999999999998888889999999999 8899988887 54442 2222 33 566665
Q ss_pred HHHHHHHhhc----CCchhhHHHH-HHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcC
Q 001845 459 AAAKAREYLD----KPAIHETMVK-VSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQ 533 (1006)
Q Consensus 459 a~~~l~~~L~----~~~~~e~l~k-~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~ 533 (1006)
.+-.+.+.++ +|...-.+.+ .++|++|||.+.+.+. ..+.++.+...|..++.++|.+|+++.+|+++...
T Consensus 447 ~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~----~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 447 GLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRL----EPELLRIAISNFVDETLEVQYTILMSSVKLIANSI 522 (757)
T ss_pred HHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhh----hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence 6666777776 4433322211 2599999999998762 24788999999999999999999999999987622
Q ss_pred CCChhHH----HHHHHHHHHhc-cCCChHHHHHHHHHHHHhcc--hHH-HHHhhhcCC
Q 001845 534 PADPELQ----NQIWAIFNKYE-SCIEVEIQQRAVEYFALSRK--GAA-LMDILAEMP 583 (1006)
Q Consensus 534 ~~~~e~~----~~v~~vl~~~~-~s~d~EvqqRA~eyl~Ll~~--~~~-~~~vl~~mP 583 (1006)
.... +....+.+.|. +..++|+||||.+|++++.. .++ -..++++.|
T Consensus 523 ---~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra~my~~~lst~~~~~s~~i~~e~~~ 577 (757)
T COG5096 523 ---RKAKQCNSELDQDVLRRCFDYVLVPDLRDRARMYSRLLSTPLPEFSDPILCEAKK 577 (757)
T ss_pred ---HhhhhccchhccHHHHHHHhccCChhHHHHHHHHHHHhcCCCccccchhhhcccc
Confidence 2222 24446777764 78888999999999999984 233 334455533
No 12
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=99.96 E-value=5.4e-29 Score=232.96 Aligned_cols=110 Identities=37% Similarity=0.719 Sum_probs=94.3
Q ss_pred ccccccCChhhHHHHhhhcCCCCcceeEeec---CCCCCCHHHHHHHHhccceEEecCCCCCCCcEEEEEEEeecCCCce
Q 001845 851 FLQPITVSAEEFFPQWRSLSGPPLKLQEVVR---GVRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAM 927 (1006)
Q Consensus 851 f~~p~~~~~~~F~~rW~~i~~~~~E~~~~~~---~~~~~~~~~~~~~l~~~g~~v~~~~d~~~~n~~~aGi~~~~~~g~~ 927 (1006)
||+|++|++++||+|||+|+++++|.|++|+ ...+++.+.+++++.+|||.+++|+||||+|+|+||+|||++.|++
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~Q~vf~~~~~~~~~~~~~~~~~l~g~~~~vl~~vDpnp~n~v~Agi~~t~~~g~~ 80 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEAQEVFKLKDAKRPMDLESIRRKLEGFGFAVLDGVDPNPNNIVGAGIFHTKSSGNV 80 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEEEEEEE----SS---HHHHHHHHHHHTSEEETSSSSSTTSEEEEEEEE-S-S-EE
T ss_pred CCCCccCCHHHHHHHHHhccCCccccEEEEcccccCCcccHHHHHHHHhcCCeEecCCCCCCcccEEEEEEEEecCCCcE
Confidence 8999999999999999999999999999998 7788999999999999999999999999999999999999977999
Q ss_pred eEEEEEeeCcccCceEEEEEEeCCCchHHHHHHH
Q 001845 928 LCLTRIETDPADRTQLRMTVASGDPTLTFELKEF 961 (1006)
Q Consensus 928 ~~Lvrie~~~~~~~~~ritvRs~~~~ls~~i~~~ 961 (1006)
|||+|||+|.+++ +|||||||+++++|..|+++
T Consensus 81 gcLlRlE~n~~~~-~~RlTvRst~~~vs~~l~~l 113 (113)
T PF02296_consen 81 GCLLRLEPNQDAK-MFRLTVRSTDPSVSKALCKL 113 (113)
T ss_dssp EEEEEEEEETTTT-EEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEeECCcCC-eEEEEEEECChhHHHHHhcC
Confidence 9999999997778 99999999999999999875
No 13
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=99.60 E-value=1.4e-14 Score=138.26 Aligned_cols=95 Identities=34% Similarity=0.512 Sum_probs=85.4
Q ss_pred CceeeecCCCeEEEEEEeE--ecceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCC-cccCCCCeeEEEEEEEec
Q 001845 742 DSGVLYEDPYVQIGIKAEW--RGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMNL 818 (1006)
Q Consensus 742 ~~GvlYe~~~lqI~~k~~~--~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~-~tI~p~~q~q~~v~v~~~ 818 (1006)
++|++|||++|+|+++.++ +++.++|.++|+|+++.+|++|++++++|+++++++.+.+ ++|+|+++++|.+.++|
T Consensus 1 ~~~~~ye~~~l~I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~- 79 (115)
T PF02883_consen 1 PEGVLYEDNGLQIGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN- 79 (115)
T ss_dssp SEEEEEEETTEEEEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE-
T ss_pred CCEEEEeCCCEEEEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE-
Confidence 4699999999999999999 9999999999999999999999999999999999999987 89999999999999999
Q ss_pred CCCCC------CcEEEEEEeeCCce
Q 001845 819 RPSRD------VAVLDFSYKFNTNM 837 (1006)
Q Consensus 819 ~~~~~------~P~l~i~y~~~g~~ 837 (1006)
.+|.+ .|+++++|.++|+.
T Consensus 80 ~~~~~~~~~~l~~~~~vsy~~~g~~ 104 (115)
T PF02883_consen 80 SPFSEPTPKPLKPRLRVSYNVGGQP 104 (115)
T ss_dssp SS-BSTTSSTTEEEEEEEEEETTEE
T ss_pred eecccCCCCCcCeEEEEEEEECCEE
Confidence 66665 79999999999983
No 14
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=99.48 E-value=3.9e-13 Score=125.91 Aligned_cols=97 Identities=30% Similarity=0.313 Sum_probs=90.1
Q ss_pred eecCCCeEEEEEEeEecceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCC-cccCCCCeeEEEEEEEecCCCCCC
Q 001845 746 LYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMNLRPSRDV 824 (1006)
Q Consensus 746 lYe~~~lqI~~k~~~~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~-~tI~p~~q~q~~v~v~~~~~~~~~ 824 (1006)
+||+++|+|+++++++++.+++.++|+|++.++|++|.+++++|+++++++++.+ ++|+||++++|.+.+.+..++...
T Consensus 1 ~~~~~~l~I~~~~~~~~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~~~~~~~ 80 (104)
T smart00809 1 AYEKNGLQIGFKFERRPGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENPGKFPLR 80 (104)
T ss_pred CccCCCEEEEEEEEcCCCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECCCCCCEE
Confidence 5899999999999999999999999999999999999999999999999998887 799999999999999999988899
Q ss_pred cEEEEEEeeCCceEEEEe
Q 001845 825 AVLDFSYKFNTNMVNVKL 842 (1006)
Q Consensus 825 P~l~i~y~~~g~~~~~~L 842 (1006)
|+++++|.++|++.+...
T Consensus 81 ~~~~vsy~~~g~~~~~~~ 98 (104)
T smart00809 81 LRLRLSYLLGGSAVTEQG 98 (104)
T ss_pred EEEEEEEEECCEEEEEEE
Confidence 999999999997655443
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.14 E-value=1.6e-09 Score=131.14 Aligned_cols=371 Identities=15% Similarity=0.147 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHh--CCCCCchHHHHHH----hccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhH
Q 001845 53 KYVWKMLYIYML--GYDVDFGHMEAVS----LISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCL 126 (1006)
Q Consensus 53 k~v~KLiyi~~l--G~dv~f~~~~vi~----L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~l 126 (1006)
-.++|+.|+++. ...-+....-+++ =+.+++...+-++-=+++.+. .+|++--+.+.+.+=+.|+++++|--
T Consensus 56 ~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~ 133 (526)
T PF01602_consen 56 LELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKK 133 (526)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHH
Confidence 357888888863 4443343444444 455666666666665665553 78999999999999999999999999
Q ss_pred HHHhhhcCC--CHHhHHH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccc--cCcHHHHHHhhhcCCChhHHH
Q 001845 127 ALTMVGNIG--GREFAES-LAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN--VDGWADRMAQLLDERDLGVLT 201 (1006)
Q Consensus 127 AL~~l~~i~--~~e~~~~-l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~--~~~~~~~l~~lL~d~d~~V~~ 201 (1006)
|+-++..+. .++.++. +.+.+.+++. |.++-|+..|+.++..+ +.+|+... ...+...+.+++.+.+|-+..
T Consensus 134 A~~~l~~i~~~~p~~~~~~~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~ 210 (526)
T PF01602_consen 134 AALALLKIYRKDPDLVEDELIPKLKQLLS--DKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQI 210 (526)
T ss_dssp HHHHHHHHHHHCHCCHHGGHHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhhcc--CCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHH
Confidence 999999885 4888877 7999999996 67899999999988888 44444311 025677777778899999999
Q ss_pred HHHHHHHHHHhcChhhh--hccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCccc
Q 001845 202 SSMSLLVALVSNNHEAY--WSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVK 279 (1006)
Q Consensus 202 ~a~~ll~~I~~~~~~~~--~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~ 279 (1006)
..+.++..+++.++..- ..+++.+ .......++=.....++++..+.+. +.......+.+.+++.+.
T Consensus 211 ~il~~l~~~~~~~~~~~~~~~~i~~l-----~~~l~s~~~~V~~e~~~~i~~l~~~--~~~~~~~~~~L~~lL~s~---- 279 (526)
T PF01602_consen 211 KILRLLRRYAPMEPEDADKNRIIEPL-----LNLLQSSSPSVVYEAIRLIIKLSPS--PELLQKAINPLIKLLSSS---- 279 (526)
T ss_dssp HHHHHHTTSTSSSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHTSS----
T ss_pred HHHHHHHhcccCChhhhhHHHHHHHH-----HHHhhccccHHHHHHHHHHHHhhcc--hHHHHhhHHHHHHHhhcc----
Confidence 99999998887665443 2233222 0011134555666778888776653 344555667777777432
Q ss_pred ccccCCChhHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhc
Q 001845 280 NVNKNNASHAVLFEALALVMHLDAEK-EMMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITS 357 (1006)
Q Consensus 280 ~~~~~n~~~aVl~eai~~i~~l~~~~-~l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~ 357 (1006)
..-+-|-+++.+..+.... ..+. -......++. +.+..+|..+|+.|..++.... +..-...+...
T Consensus 280 -------~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~ 347 (526)
T PF01602_consen 280 -------DPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESN----VKEILDELLKY 347 (526)
T ss_dssp -------SHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHH
T ss_pred -------cchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccc----hhhHHHHHHHH
Confidence 2235565666666554322 2222 1222223444 7889999999999999997543 33344455566
Q ss_pred ccC-cChhHHHHHHHHhhhcc--CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcC
Q 001845 358 LKD-PDISIRRRALDLLYGMC--DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAG 434 (1006)
Q Consensus 358 L~d-~D~sIr~~aL~lL~~l~--n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g 434 (1006)
+++ .|..+|+.++..+..+| ...+.+..++-|++.+...+..+..+++..|..+..+++....+.+..+.+++...
T Consensus 348 l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~- 426 (526)
T PF01602_consen 348 LSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDI- 426 (526)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSS-
T ss_pred HHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHh-
Confidence 644 37889999999998887 46678899999999999988899999999999999999888899999999888762
Q ss_pred CcchHHHHHHHHHHHhcCCC
Q 001845 435 DFVSDDIWFRVVQFVTNNED 454 (1006)
Q Consensus 435 ~~v~~ei~~~i~~ii~~~~~ 454 (1006)
-.+++...++.++..+.+
T Consensus 427 --~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 427 --SSPEALAAAIWILGEYGE 444 (526)
T ss_dssp --SSHHHHHHHHHHHHHHCH
T ss_pred --hHHHHHHHHHhhhcccCC
Confidence 345566667777766543
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=99.04 E-value=1.1e-06 Score=108.34 Aligned_cols=367 Identities=13% Similarity=0.180 Sum_probs=224.5
Q ss_pred HHHHHHHHHHh--CCCCCchHHHHHH----hccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHH
Q 001845 54 YVWKMLYIYML--GYDVDFGHMEAVS----LISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLA 127 (1006)
Q Consensus 54 ~v~KLiyi~~l--G~dv~f~~~~vi~----L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lA 127 (1006)
-++||+|+|+. +..-.....-+++ =+.+++...|-++-=.++.+ ..+++.-.++..++|=+.|++|++|--|
T Consensus 83 elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~e~l~~~lkk~L~D~~pYVRKtA 160 (746)
T PTZ00429 83 ELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVLEYTLEPLRRAVADPDPYVRKTA 160 (746)
T ss_pred HHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 47889999984 4333333333443 44455555555554444443 3478888899999999999999999999
Q ss_pred HHhhhcCC--CHHhHH--HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc-CcHHHHHHhhhcCCChhHHHH
Q 001845 128 LTMVGNIG--GREFAE--SLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV-DGWADRMAQLLDERDLGVLTS 202 (1006)
Q Consensus 128 L~~l~~i~--~~e~~~--~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~-~~~~~~l~~lL~d~d~~V~~~ 202 (1006)
.-++.++- .+++++ .+.+.+.+++. |++|.|.-.|+.++..+...+|+.+.. .....++...|.+-+.--...
T Consensus 161 alai~Kly~~~pelv~~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~ 238 (746)
T PTZ00429 161 AMGLGKLFHDDMQLFYQQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLY 238 (746)
T ss_pred HHHHHHHHhhCcccccccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHH
Confidence 99999975 466653 56788889886 899999999999999999888875421 134555666666667666666
Q ss_pred HHHHHHHHHhcChhhh----hccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH-HHccCCc
Q 001845 203 SMSLLVALVSNNHEAY----WSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQR-ILMGTDV 277 (1006)
Q Consensus 203 a~~ll~~I~~~~~~~~----~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~-il~~~~~ 277 (1006)
.+.++....+.+.... ..+.+.+ ...+|=.....++++-.+....+++..+.+..-+.. +++-..
T Consensus 239 IL~lL~~y~P~~~~e~~~il~~l~~~L---------q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s- 308 (746)
T PTZ00429 239 ILELLAAQRPSDKESAETLLTRVLPRM---------SHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR- 308 (746)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-
Confidence 6666644332222212 2233322 124677777778877766543233332222111111 111000
Q ss_pred ccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-hcCCC-CchhHHHHHHHHHHHccCCcHHHHHHhHHHhh
Q 001845 278 VKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKF-IAVRE-PNIRYLGLENMTRMLMVTDVHDIIKRHQAQII 355 (1006)
Q Consensus 278 ~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~f-L~s~~-~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~ 355 (1006)
...|.++ +++..++.++... +.++.. -+..| ...+| ..+|...|+.|..|+........+ ..+.
T Consensus 309 ----s~~eiqy-vaLr~I~~i~~~~--P~lf~~---~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL----~EL~ 374 (746)
T PTZ00429 309 ----RDAETQY-IVCKNIHALLVIF--PNLLRT---NLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEIL----KELA 374 (746)
T ss_pred ----CCccHHH-HHHHHHHHHHHHC--HHHHHH---HHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHH----HHHH
Confidence 0122233 3444455555533 334443 23333 33344 459999999999999865432233 3445
Q ss_pred hcccCcChhHHHHHHHHhhhccC--cccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhc
Q 001845 356 TSLKDPDISIRRRALDLLYGMCD--VSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKA 433 (1006)
Q Consensus 356 ~~L~d~D~sIr~~aL~lL~~l~n--~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~ 433 (1006)
....|.|..++++++.-+-.++- ++-++.+|+.|++++... .++..+.+..+..+..+||..+ .+..+...+ ..
T Consensus 375 eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~-~~~v~e~i~vik~IlrkyP~~~--il~~L~~~~-~~ 450 (746)
T PTZ00429 375 EYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRR-PELLPQVVTAAKDIVRKYPELL--MLDTLVTDY-GA 450 (746)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHCccHH--HHHHHHHhh-cc
Confidence 56668899999999999988875 466789999999999754 3466788888999999998532 223322211 01
Q ss_pred CCcchHHHHHHHHHHHhcC
Q 001845 434 GDFVSDDIWFRVVQFVTNN 452 (1006)
Q Consensus 434 g~~v~~ei~~~i~~ii~~~ 452 (1006)
......++-..++.|+..+
T Consensus 451 ~~i~e~~AKaaiiWILGEy 469 (746)
T PTZ00429 451 DEVVEEEAKVSLLWMLGEY 469 (746)
T ss_pred cccccHHHHHHHHHHHHhh
Confidence 1223444555556665544
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.57 E-value=0.00018 Score=95.77 Aligned_cols=508 Identities=13% Similarity=0.079 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHHHhCC--C-------C-CchHHHHHHhccCCCcCc---hhhhHHHHHhhcccChhHHHH-----HHHHH
Q 001845 51 KKKYVWKMLYIYMLGY--D-------V-DFGHMEAVSLISAPKYPE---KQVGYIVTSCLLNENHDFLRL-----AINTV 112 (1006)
Q Consensus 51 kkk~v~KLiyi~~lG~--d-------v-~f~~~~vi~L~~S~~~~~---KrlgYL~l~~l~~~~~e~~~L-----viNsl 112 (1006)
-|+.-.+.||....+. | + .-+....+.++.+.+-.+ ++..-.++..+...++..... ++-.+
T Consensus 115 aKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~L 194 (2102)
T PLN03200 115 AQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDIL 194 (2102)
T ss_pred HHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHH
Confidence 4555555555555442 2 1 223445667777764333 333445555555555443322 44556
Q ss_pred HhhcCCCChhHHhHHHHhhhcCCC--HHhH-----HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCc---cccC
Q 001845 113 RNDIIGRNETFQCLALTMVGNIGG--REFA-----ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDV---VNVD 182 (1006)
Q Consensus 113 ~KDL~s~n~~~~~lAL~~l~~i~~--~e~~-----~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~---v~~~ 182 (1006)
.+=|.+.++..+..|..++.++.. ++.. .-..+.+.+++.+ +.++.||..|+-|+..|...+++. +...
T Consensus 195 V~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s-g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~a 273 (2102)
T PLN03200 195 VKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ-GNEVSVRAEAAGALEALSSQSKEAKQAIADA 273 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc-CCChHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 666778888888888887766542 2222 3456888888864 456789999999999999876642 2224
Q ss_pred cHHHHHHhhhcCCC---------hhHHHHHHHHHHHHHhcChhhhhccCCCCCCCcc------------cc---------
Q 001845 183 GWADRMAQLLDERD---------LGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQE------------YT--------- 232 (1006)
Q Consensus 183 ~~~~~l~~lL~d~d---------~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~e------------y~--------- 232 (1006)
+-++.+.+++..++ ....-+|+-.+-.||..-+.....+...++.+.+ |.
T Consensus 274 GgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~ 353 (2102)
T PLN03200 274 GGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAE 353 (2102)
T ss_pred CCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchh
Confidence 55777777776433 4457788888888886533211111100000000 00
Q ss_pred ccCCC----ChhHHHHHHHHHhcCCCCCChhh-HHHHHHHH---------HHHHccCCcccc----cccCCChhHHHHHH
Q 001845 233 YYGIP----SPWLQVKTMRALQYFPTVEDPNT-RRSLFEVL---------QRILMGTDVVKN----VNKNNASHAVLFEA 294 (1006)
Q Consensus 233 ~~~~~----~pwlqvklLrlL~~~~~~~d~~~-~~~l~~~l---------~~il~~~~~~~~----~~~~n~~~aVl~ea 294 (1006)
..... ..|..+++++ ..++.. .+...+.| .+++...|..+- +... +.-+.-++
T Consensus 354 ~~~~i~~~~v~~~LV~Llr-------~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~--~~evQ~~A 424 (2102)
T PLN03200 354 STRAFDPTVIEQILVKLLK-------PRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMA--TADVQEEL 424 (2102)
T ss_pred hhhhccccccHHHHHHHhC-------CCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccC--CHHHHHHH
Confidence 00011 1243333332 111211 11111222 222221111110 0011 22455566
Q ss_pred HHHHHhcCC-cHHHH-----HHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc-HHHHHH--hHHHhhhcccCcChhH
Q 001845 295 LALVMHLDA-EKEMM-----SQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDV-HDIIKR--HQAQIITSLKDPDISI 365 (1006)
Q Consensus 295 i~~i~~l~~-~~~l~-----~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~-~~~v~~--~~~~i~~~L~d~D~sI 365 (1006)
+..+..+.. +.+.+ ..++..|..||.+.+.++|..++..|..|+...+. ...|-. -...++.+|..++..+
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~i 504 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKA 504 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 666655542 22222 23678899999999999999999999999875432 223332 2456778899999999
Q ss_pred HHHHHHHhhhcc-CcccHHHHHH------HHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcch
Q 001845 366 RRRALDLLYGMC-DVSNAKDIVE------ELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVS 438 (1006)
Q Consensus 366 r~~aL~lL~~l~-n~~Nv~~Iv~------eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~ 438 (1006)
|..|.-.|..+| +++|++.++. -|++.+...+...+++++..|..++..- + ..-+..+..++...+..+.
T Consensus 505 qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~--d-~~~I~~Lv~LLlsdd~~~~ 581 (2102)
T PLN03200 505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA--D-AATISQLTALLLGDLPESK 581 (2102)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc--c-hhHHHHHHHHhcCCChhHH
Confidence 999999999998 5667777663 4778888889999999999999987542 2 2344556677766554444
Q ss_pred HHHHHHHHHHHh---cCCCcH-----HHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCC---hHHHHHHHH
Q 001845 439 DDIWFRVVQFVT---NNEDLQ-----PYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCS---PKEIFSIIH 507 (1006)
Q Consensus 439 ~ei~~~i~~ii~---~~~~l~-----~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~---~~~~~~~l~ 507 (1006)
..++..+-.++. .++..+ ..++..|.++|+.+ ++..-+-++|+++.|...-.+ .+. ..+.+--+.
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d--~~~avv~agaIpPLV 657 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQD--LCESLATDEIINPCI 657 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChH--HHHHHHHcCCHHHHH
Confidence 444444433332 211111 13788999999875 445566789999999763222 000 001122333
Q ss_pred hhCCCCChhHHHHHHHHHHHHHhhcCCCChhHH-----HHHHHHHHHhccCCChHHHHHHHHHHHHh-cchHHHHHh
Q 001845 508 EKLPTVSMSTVAILLSTYAKILMHTQPADPELQ-----NQIWAIFNKYESCIEVEIQQRAVEYFALS-RKGAALMDI 578 (1006)
Q Consensus 508 ~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~-----~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll-~~~~~~~~v 578 (1006)
......+..+|...-.++..++.. .. ++.+ ..+..-|-....+.|.++++-|.+-+.-+ ..++....+
T Consensus 658 ~LLss~~~~v~keAA~AL~nL~~~--~~-~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei 731 (2102)
T PLN03200 658 KLLTNNTEAVATQSARALAALSRS--IK-ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEA 731 (2102)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhC--CC-HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHH
Confidence 344456667777777777776531 11 2211 11233333445778999999998885544 445444433
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.56 E-value=0.00074 Score=90.06 Aligned_cols=410 Identities=18% Similarity=0.161 Sum_probs=246.3
Q ss_pred HHHHhhhcCCC---HHhHH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc---ccCcHHHHHHhhhc-CCCh
Q 001845 126 LALTMVGNIGG---REFAE-SLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV---NVDGWADRMAQLLD-ERDL 197 (1006)
Q Consensus 126 lAL~~l~~i~~---~e~~~-~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v---~~~~~~~~l~~lL~-d~d~ 197 (1006)
.||..||.... ..+++ -..+.+.+++. +.++.++..|+.++.++...+++.. ...+.++.+.++|+ +.++
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~ 246 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV 246 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh
Confidence 46666666554 22233 37788889997 4689999999999999887766432 23577899999996 4677
Q ss_pred hHHHHHHHHHHHHHhcChhhhhcc-----CCCC----CCCc-cccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 001845 198 GVLTSSMSLLVALVSNNHEAYWSC-----LPKC----DVPQ-EYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEV 267 (1006)
Q Consensus 198 ~V~~~a~~ll~~I~~~~~~~~~~~-----v~~l----~~~~-ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~ 267 (1006)
.|...|+.+|..|+.++++.-..+ ++.+ .-+. +. ..+..+.=+|-..+..|..++.. . ..+...
T Consensus 247 ~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~-~~~~~~~~Lqe~AvwALsNIcgg--~---~~ll~~ 320 (2102)
T PLN03200 247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEF-MQGEFAQALQENAMGALANICGG--M---SALILY 320 (2102)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhh-hccccchHHHHHHHHHHHHHhCC--c---hhhHHH
Confidence 999999999999998765421111 1111 0000 00 00111222344455555554432 1 123344
Q ss_pred HHHHHccCCcccccccCCChhHHHHHH---HHHHHh-cCCcHHHH-----HHHHHHHHHhhcCCCCch-hHHHHHHHHHH
Q 001845 268 LQRILMGTDVVKNVNKNNASHAVLFEA---LALVMH-LDAEKEMM-----SQCIALLGKFIAVREPNI-RYLGLENMTRM 337 (1006)
Q Consensus 268 l~~il~~~~~~~~~~~~n~~~aVl~ea---i~~i~~-l~~~~~l~-----~~~~~~L~~fL~s~~~ni-rylaL~~L~~l 337 (1006)
|...+.+.+ ...++-.+ +..++. ++.+.+.. ..++..|.+++.++++.. +=.+...|..+
T Consensus 321 L~~ll~s~r----------d~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl 390 (2102)
T PLN03200 321 LGELSESPR----------SPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL 390 (2102)
T ss_pred HHHhhcccc----------hHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh
Confidence 444442110 11222222 222322 23322211 134578999998888876 54566776565
Q ss_pred HccCCcHHHHHHhH---HHhhhcccCcChhHHHHHHHHhhhccCc--ccHHHH-----HHHHHHHhhhcChHhHHHHHHH
Q 001845 338 LMVTDVHDIIKRHQ---AQIITSLKDPDISIRRRALDLLYGMCDV--SNAKDI-----VEELLQYLSTADFAMREELSLK 407 (1006)
Q Consensus 338 ~~~~~~~~~v~~~~---~~i~~~L~d~D~sIr~~aL~lL~~l~n~--~Nv~~I-----v~eLl~yl~~~d~~~~~~lv~~ 407 (1006)
..+......+ .|. ..++.+|...+..++..+..-|..+|+. ++++.| +.-|.++|...+...++..+..
T Consensus 391 ~gN~~l~~~L-~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~ 469 (2102)
T PLN03200 391 YGNAYLSRKL-NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVAL 469 (2102)
T ss_pred cCChHHHHHH-HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 5432111112 232 2467778878888999999998888844 334444 5678889988889999999999
Q ss_pred HHHHHhhcCCChhh------HHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHH-----HHHHHHHhhcCCchhhHH
Q 001845 408 AAILAEKFAPDLSW------YVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPY-----AAAKAREYLDKPAIHETM 476 (1006)
Q Consensus 408 I~~laeky~~~~~w------~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~-----a~~~l~~~L~~~~~~e~l 476 (1006)
|+.++.. ..+.+| -|..+.+||+.+...+.++....+-++-.+.++.+.. ++..|+++|++... ..
T Consensus 470 L~nLa~~-ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~--~~ 546 (2102)
T PLN03200 470 LAILTDE-VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP--KG 546 (2102)
T ss_pred HHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH--HH
Confidence 9888732 222233 4778889998766667777666777776655454442 46678888876532 23
Q ss_pred HHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHH------HHHHHHHHHh
Q 001845 477 VKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQ------NQIWAIFNKY 550 (1006)
Q Consensus 477 ~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~------~~v~~vl~~~ 550 (1006)
.+.++|.|+.....- ..+++..+.+-+...++.++..++.++..+..- ... .+.+ ......+...
T Consensus 547 q~~Aa~AL~nLi~~~-------d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl-~~~-~d~~~~g~~~~ggL~~Lv~L 617 (2102)
T PLN03200 547 QEIAAKTLTKLVRTA-------DAATISQLTALLLGDLPESKVHVLDVLGHVLSV-ASL-EDLVREGSAANDALRTLIQL 617 (2102)
T ss_pred HHHHHHHHHHHHhcc-------chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-cch-hHHHHHhhhccccHHHHHHH
Confidence 456889888764422 123445555556677788888888888775432 111 1211 1234455555
Q ss_pred ccCCChHHHHHHHHHH
Q 001845 551 ESCIEVEIQQRAVEYF 566 (1006)
Q Consensus 551 ~~s~d~EvqqRA~eyl 566 (1006)
..+.+.++|..|+..+
T Consensus 618 L~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 618 LSSSKEETQEKAASVL 633 (2102)
T ss_pred HcCCCHHHHHHHHHHH
Confidence 6777899999998654
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.47 E-value=2.6e-05 Score=100.01 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=42.3
Q ss_pred HHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHH
Q 001845 110 NTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMA 189 (1006)
Q Consensus 110 Nsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~ 189 (1006)
+.|..-|.|+++.+|-.|+..|+.++.++..+ .+.++|. |.++.||..|+-++.++-...+. .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~----~L~~aL~--D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGP----ALVAALG--DGAAAVRRAAAEGLRELVEVLPP-------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHH----HHHHHHc--CCCHHHHHHHHHHHHHHHhccCc-------hHHHH
Confidence 44445555555556665665555555544322 2233343 44555555555555444211110 12344
Q ss_pred hhhcCCChhHHHHHHHHHHHH
Q 001845 190 QLLDERDLGVLTSSMSLLVAL 210 (1006)
Q Consensus 190 ~lL~d~d~~V~~~a~~ll~~I 210 (1006)
.+|+|.|+.|-.+|+..|-.+
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhh
Confidence 455555555555555555444
No 20
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.42 E-value=0.00011 Score=84.37 Aligned_cols=318 Identities=18% Similarity=0.213 Sum_probs=182.2
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc--
Q 001845 243 VKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIA-- 320 (1006)
Q Consensus 243 vklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~-- 320 (1006)
+..+++|..++.. |++.....+.+++++....... -+ .--++...++++++.+.. ..-.+-..+..|..
T Consensus 8 ~EaV~iLd~lC~~-d~s~v~r~~p~ik~l~~R~~~~-----~~-~~~~lL~i~qFfL~hge~--~~~d~e~~~~~~F~~~ 78 (459)
T PF14764_consen 8 VEAVRILDVLCRQ-DPSLVYRVFPCIKRLFGRLASD-----LS-SARVLLPIAQFFLNHGEA--AAVDSEPVLQHFFTSV 78 (459)
T ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHHhcC-----cc-chHHHHHHHHHHHccChH--hhcChHHHHHHHHHHh
Confidence 4456666666775 7777666777777776322110 11 125788888888887653 11112222222221
Q ss_pred -CCCCchhHHHHHHHHHHHccC----CcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHH----
Q 001845 321 -VREPNIRYLGLENMTRMLMVT----DVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQ---- 391 (1006)
Q Consensus 321 -s~~~nirylaL~~L~~l~~~~----~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~---- 391 (1006)
++.-.--+++.+.+.-+..+. .....+.++...|+.+|--..+.....=++||-.|.+++++-++..-|++
T Consensus 79 l~~~f~dp~lA~e~~~F~~~N~~~L~~~~~~~~~~FP~llK~lAWn~~~l~~eFv~LLP~Li~~~Ta~EvlH~LLDLPcL 158 (459)
T PF14764_consen 79 LSRLFHDPFLAFETLQFCRDNLKLLCSNTSIFPQYFPNLLKFLAWNSPSLVSEFVDLLPALISPGTAVEVLHSLLDLPCL 158 (459)
T ss_pred hHHhcCChHHHHHHHHHHHHHHHHHccccchHhHhchHHHHHHHcCcHHHHHHHHHHhHHHcCCCcHHHHHHHHHhHHHH
Confidence 232333345555444333211 11245778888999999888899999999999999999999999887775
Q ss_pred ------Hhhhc------------------ChH-------------hHHHH-----HHHH---HHHHhhcCCC--------
Q 001845 392 ------YLSTA------------------DFA-------------MREEL-----SLKA---AILAEKFAPD-------- 418 (1006)
Q Consensus 392 ------yl~~~------------------d~~-------------~~~~l-----v~~I---~~laeky~~~-------- 418 (1006)
..+.. +.. +|.|. +.++ ..+..+.+..
T Consensus 159 taaLe~~~r~s~~~s~~~~~d~~~~~~~~~~~~~~p~~~~lf~~LLR~E~g~g~~~~rl~~L~~lL~~~~~~pRv~~c~~ 238 (459)
T PF14764_consen 159 TAALELQLRSSGAASERPLWDPSLRPSSCLEAFRDPEYRPLFQYLLRDEAGSGGTIERLPPLHQLLQPAAGCPRVVQCAE 238 (459)
T ss_pred HHHHHHHHhcccccccCcccccCCCCccchhhcCCcchhHHHHHHhccccCCCCchhhhHHHHHHHHHhcCCchHHHHHh
Confidence 11100 011 11111 1111 1111122111
Q ss_pred -----hhhHHHHHHHHHHhcCCcchHHHHHH-----------------------------HHHHHhcCCCcHHHHHHHHH
Q 001845 419 -----LSWYVDVILQLIDKAGDFVSDDIWFR-----------------------------VVQFVTNNEDLQPYAAAKAR 464 (1006)
Q Consensus 419 -----~~w~vd~ll~ll~~~g~~v~~ei~~~-----------------------------i~~ii~~~~~l~~~a~~~l~ 464 (1006)
.+-|.++.++ +.++..+.. +..+...+|.+-..--+.+.
T Consensus 239 ~VP~LL~vyF~vvl~-------~ad~sLi~~L~pvlleRs~~Lfp~~~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~il 311 (459)
T PF14764_consen 239 VVPVLLQVYFSVVLQ-------DADGSLICQLLPVLLERSDALFPIPQYQAEVRRVLSSQLLALFKRHPSLVVELSKEIL 311 (459)
T ss_pred hhHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHH
Confidence 1122222221 112222222 23334445554333334455
Q ss_pred HhhcC---CchhhHHHHHHHhhhccccccccCCCCCChHHHHHHH--------HhhC----------CCCChhHHHHHHH
Q 001845 465 EYLDK---PAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSII--------HEKL----------PTVSMSTVAILLS 523 (1006)
Q Consensus 465 ~~L~~---~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l--------~~~~----------~~~s~~tr~~iLt 523 (1006)
+++.. ....+.+..-.+|++|||+.-..+ .+++. |+++.+ ++.. ..+++.+-..++|
T Consensus 312 ef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d-~rct~-~~i~~~fE~LE~llyE~~~~~~~~~~~~~~~~~rl~~~lmt 389 (459)
T PF14764_consen 312 EFLGSASNIHSKEELFTHLVWAIGEYLSVSYD-RRCTV-EQINEFFEALEALLYEVTQSRRDPSASRPSSQPRLMTVLMT 389 (459)
T ss_pred HHhcccccccchhHHHHHHHHHHhcccccccC-CccCH-HHHHHHHHHHHHHHHHHhhccccccccCCCCchhHHHHHHH
Confidence 55543 234577777789999999876544 34543 333322 2221 2345667788999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHH-------------hccCCChHHHHHHHHHHHHhcchHHHHHhhhcC
Q 001845 524 TYAKILMHTQPADPELQNQIWAIFNK-------------YESCIEVEIQQRAVEYFALSRKGAALMDILAEM 582 (1006)
Q Consensus 524 a~~Kl~~~~~~~~~e~~~~v~~vl~~-------------~~~s~d~EvqqRA~eyl~Ll~~~~~~~~vl~~m 582 (1006)
+++||.. +.+|+.+++.-.+.+ +....+..|.+||.|+++|++.+.+.+.|+.|=
T Consensus 390 ~laKLAs----r~~dl~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~PsvA~~vL~P~ 457 (459)
T PF14764_consen 390 ALAKLAS----RSQDLIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMPSVAQFVLTPS 457 (459)
T ss_pred HHHHHHH----hCHhhhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCchHHHHhcCCC
Confidence 9999555 467888877665543 234678899999999999999999999999853
No 21
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=98.30 E-value=4e-06 Score=79.88 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=73.6
Q ss_pred cccccCChhhHHHHhhhcCCCCc--ceeEeecCCCCCCHHHHHHHHhccce-EEecCCCC-CCCcEEEEEEEeecCCCce
Q 001845 852 LQPITVSAEEFFPQWRSLSGPPL--KLQEVVRGVRPMPLLEMANLFNSCHL-IVCPGLDP-NPNNLVASTTFYSESTRAM 927 (1006)
Q Consensus 852 ~~p~~~~~~~F~~rW~~i~~~~~--E~~~~~~~~~~~~~~~~~~~l~~~g~-~v~~~~d~-~~~n~~~aGi~~~~~~g~~ 927 (1006)
.....|+.++|.++|++++. .. |.+...+ ....+.+.+.+.|+..|+ .+..|..+ .+..+|.++ +..++.
T Consensus 2 ~~d~~~~~~~F~~~W~sl~~-~~~~e~~~~~~-~~~~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~----~~~~~~ 75 (114)
T PF09066_consen 2 VEDGSMDPEEFQEMWKSLPD-SNQQELSIQLN-ASVPSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSA----KTTNGI 75 (114)
T ss_dssp -TT----HHHHHHHHHHS-G-GG--EEEEEET-T----HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEE----EBTTS-
T ss_pred CCCCccCHHHHHHHHHhCCc-ccceEEEEecc-ccCCcHHHHHHHHHHCCEEEEecCCCCccccEEEEEE----EcCCCc
Confidence 34457899999999999983 33 5554444 344588999999999999 55566433 355667774 333678
Q ss_pred eEEEEEeeCcccCceEEEEEEeCCCchHHHHHHHHHHHhh
Q 001845 928 LCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLV 967 (1006)
Q Consensus 928 ~~Lvrie~~~~~~~~~ritvRs~~~~ls~~i~~~i~~~l~ 967 (1006)
.+|+.+..+..+. .++++|||+++.++..+.++++.+|+
T Consensus 76 ~fL~El~~~~~~~-~~~v~vK~~~~~~~~~f~~~~~~iL~ 114 (114)
T PF09066_consen 76 WFLVELTIDPGSP-SVKVTVKSENPEMAPLFLQLFESILK 114 (114)
T ss_dssp EEEEEEEE-TT-S-SEEEEEEESSCCCHHHHHHHHHHHCC
T ss_pred EEEEEEEEcCCCc-cEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 9999999987666 89999999999999999999998874
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0098 Score=74.30 Aligned_cols=402 Identities=13% Similarity=0.127 Sum_probs=209.7
Q ss_pred cChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC---HH---hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 001845 100 ENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGG---RE---FAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYR 173 (1006)
Q Consensus 100 ~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~---~e---~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~ 173 (1006)
..||++-+.+++ .+|+|+..|-.||+.++++.. .. ....+.+-..+++.++ +++ ||-.|+-|+..+..
T Consensus 115 ~WPell~~L~q~----~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~-s~~-vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 KWPELLQFLFQS----TKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDP-SSP-VRVAAVRALGAFAE 188 (1075)
T ss_pred chHHHHHHHHHH----hcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCC-cch-HHHHHHHHHHHHHH
Confidence 378887666665 579999999999999998653 22 2357777778888764 455 99999999988887
Q ss_pred hCC---Ccccc-----CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHH
Q 001845 174 KNP---DVVNV-----DGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKT 245 (1006)
Q Consensus 174 ~~p---~~v~~-----~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvkl 245 (1006)
..+ +.++. +..+..+...+.+.|....-.++-+|.++....|..++..+. .+
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--------------------~i 248 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--------------------QI 248 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--------------------HH
Confidence 764 22210 134444555666778888888888999988877765443321 12
Q ss_pred HHHHhcCCCC--CChhhHHHHHHHHHHHHccCCcccccccC--CChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcC
Q 001845 246 MRALQYFPTV--EDPNTRRSLFEVLQRILMGTDVVKNVNKN--NASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAV 321 (1006)
Q Consensus 246 LrlL~~~~~~--~d~~~~~~l~~~l~~il~~~~~~~~~~~~--n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s 321 (1006)
+++--..... -|...+..-.+++..+... .+...+. +..+.++.-+......+..+.+... .+ =+..
T Consensus 249 i~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~--~d----~~de 319 (1075)
T KOG2171|consen 249 IQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN--ED----DLDE 319 (1075)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhcc--cc----cccc
Confidence 2222111111 1222332222333333221 0111111 1122233323332222221100000 00 0001
Q ss_pred CC-CchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccC------cccHHHHHHHHHHHhh
Q 001845 322 RE-PNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCD------VSNAKDIVEELLQYLS 394 (1006)
Q Consensus 322 ~~-~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n------~~Nv~~Iv~eLl~yl~ 394 (1006)
.+ ....-.|.++|-+++.+-+....+-.-...+-..|.+.+-+=|+-+|--|..++. +.|...|+.-.+.++.
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~ 399 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN 399 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence 11 1122345555555555432111111122223344556666666666666655543 2366666666677777
Q ss_pred hcChHhHHHHHHHHHHHHhhcCCChhhH-HHHHHHHHHhcCCcchHHHHHHHHHHH--hcCCCcHHHHHHHHHHhhcCCc
Q 001845 395 TADFAMREELSLKAAILAEKFAPDLSWY-VDVILQLIDKAGDFVSDDIWFRVVQFV--TNNEDLQPYAAAKAREYLDKPA 471 (1006)
Q Consensus 395 ~~d~~~~~~lv~~I~~laeky~~~~~w~-vd~ll~ll~~~g~~v~~ei~~~i~~ii--~~~~~l~~~a~~~l~~~L~~~~ 471 (1006)
+.++.+|-.++.+|+.++..|++...-+ =+.+.. .++.++ ..++..|.+|+.-+.++.+++.
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~---------------aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP---------------ALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH---------------HHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 7777788888888888777777653322 111111 111111 1234556666666666666542
Q ss_pred hhhHHHHHHHhhhccccccccCCCCCChHHHHH-HHHhhCCCCChhHHHHHHHHHHHHHhhcCCC----ChhHHHHHHHH
Q 001845 472 IHETMVKVSAYLLGEYSHLLARRPGCSPKEIFS-IIHEKLPTVSMSTVAILLSTYAKILMHTQPA----DPELQNQIWAI 546 (1006)
Q Consensus 472 ~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~-~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~----~~e~~~~v~~v 546 (1006)
.. +++-|-+. ++. .|.--....++-+|.+++||++-+..--... ++.+-+.+..+
T Consensus 465 ~~---------~l~pYLd~-----------lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~ 524 (1075)
T KOG2171|consen 465 KS---------ILEPYLDG-----------LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNF 524 (1075)
T ss_pred HH---------HHHHHHHH-----------HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 22 12222221 122 2222234577889999999998754321122 23344555556
Q ss_pred HHHhccCCChHHHHHHHHHHHHhcc
Q 001845 547 FNKYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 547 l~~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
++........++|-...|...++..
T Consensus 525 L~n~~~~d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 525 LQNADDKDLRELRGKTMECLSLIAR 549 (1075)
T ss_pred HhCCCchhhHHHHhhHHHHHHHHHH
Confidence 6555556667787777788887764
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.20 E-value=0.0029 Score=76.02 Aligned_cols=278 Identities=15% Similarity=0.164 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCC---chH-HHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHH-----HHHHHhhcCCC
Q 001845 49 YEKKKYVWKMLYIYMLGYDVD---FGH-MEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLA-----INTVRNDIIGR 119 (1006)
Q Consensus 49 ~~kkk~v~KLiyi~~lG~dv~---f~~-~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~Lv-----iNsl~KDL~s~ 119 (1006)
.+....++.+|...+...+.. ..+ ..+...+.+++...|+++--.+..+.+++.....++ ...+..=+.++
T Consensus 52 ~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~ 131 (503)
T PF10508_consen 52 REQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP 131 (503)
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC
Confidence 345667777777666554432 333 334458888888999998888888777654422222 23344556889
Q ss_pred ChhHHhHHHHhhhcCCC-HHhHHHH-----HHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccc---cCcHHHHHHh
Q 001845 120 NETFQCLALTMVGNIGG-REFAESL-----APDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN---VDGWADRMAQ 190 (1006)
Q Consensus 120 n~~~~~lAL~~l~~i~~-~e~~~~l-----~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~---~~~~~~~l~~ 190 (1006)
+..+...|.+.|.++.. +.-.+.+ ...+.+++. .++..||-++.-++.++.+.+++... ..++.+.+..
T Consensus 132 d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~ 209 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK 209 (503)
T ss_pred cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH
Confidence 99999999999999876 3334455 778888885 35889999999999999999997652 2468889999
Q ss_pred hhcCCChhHHHHHHHHHHHHHhcChh--------hhhccCCCC-CCCccccccCCCChhHHHHHHHHHhcCCCCCChhhH
Q 001845 191 LLDERDLGVLTSSMSLLVALVSNNHE--------AYWSCLPKC-DVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTR 261 (1006)
Q Consensus 191 lL~d~d~~V~~~a~~ll~~I~~~~~~--------~~~~~v~~l-~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~ 261 (1006)
.|++.|.-|..+++-++.+++..... .+.+++..+ +...|. ...-.+..-.++++........+.+.
T Consensus 210 eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp----~~~~~~l~g~~~f~g~la~~~~~~v~ 285 (503)
T PF10508_consen 210 ELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDP----RLSSLLLPGRMKFFGNLARVSPQEVL 285 (503)
T ss_pred HhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCC----cccchhhhhHHHHHHHHHhcChHHHH
Confidence 99999999999999999999984422 122222222 111110 01223444455555554443233333
Q ss_pred HHHHHHHHHH---HccCCcccccccCCChhHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHhhcCCCCchhHHH
Q 001845 262 RSLFEVLQRI---LMGTDVVKNVNKNNASHAVLFEALALVMHLD--------AEKEMMSQCIALLGKFIAVREPNIRYLG 330 (1006)
Q Consensus 262 ~~l~~~l~~i---l~~~~~~~~~~~~n~~~aVl~eai~~i~~l~--------~~~~l~~~~~~~L~~fL~s~~~niryla 330 (1006)
+..-.++..+ +.+.|.. ...+.++++-.+..-. ...+.+..++...+....+...++|--+
T Consensus 286 ~~~p~~~~~l~~~~~s~d~~--------~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~ 357 (503)
T PF10508_consen 286 ELYPAFLERLFSMLESQDPT--------IREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRA 357 (503)
T ss_pred HHHHHHHHHHHHHhCCCChh--------HHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3333333333 3332211 2355666666554311 1223345566777777777888999999
Q ss_pred HHHHHHHHcc
Q 001845 331 LENMTRMLMV 340 (1006)
Q Consensus 331 L~~L~~l~~~ 340 (1006)
|+++..+...
T Consensus 358 l~al~~il~~ 367 (503)
T PF10508_consen 358 LHALASILTS 367 (503)
T ss_pred HHHHHHHHhc
Confidence 9999999654
No 24
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0032 Score=74.50 Aligned_cols=296 Identities=16% Similarity=0.158 Sum_probs=196.6
Q ss_pred ChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC--HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCc
Q 001845 101 NHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGG--REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDV 178 (1006)
Q Consensus 101 ~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~--~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~ 178 (1006)
.||+++=..+-+..=|++.-|++|--|+-.+-.+.- ||-...-+|-++.-|. |++|-|-..|+-.+.-|-|++|.-
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLe--DpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLE--DPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhcc--CCCchHHHHHHHHHHHHHhhCCcc
Confidence 367777777777777899999999999999988655 8888888888888887 678999999999999999999987
Q ss_pred cccCcHHHHHHhhhc-CCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCC
Q 001845 179 VNVDGWADRMAQLLD-ERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVED 257 (1006)
Q Consensus 179 v~~~~~~~~l~~lL~-d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d 257 (1006)
.- .+.+.+.++|- .+|--|+.-.+-|+-.+.+-.|..-+++++. |..+.. .
T Consensus 216 yL--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiep------------------------lt~li~--s 267 (877)
T KOG1059|consen 216 YL--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEP------------------------ITELME--S 267 (877)
T ss_pred cc--cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhH------------------------HHHHHH--h
Confidence 75 78899999995 4666677777777776666665544444432 222222 1
Q ss_pred hhhHHHHHHHHHHHHccCCcccccccCCChhHHHH--HHHHHHH----------------hc-CCcHHHHHHHHHHHHHh
Q 001845 258 PNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLF--EALALVM----------------HL-DAEKEMMSQCIALLGKF 318 (1006)
Q Consensus 258 ~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~--eai~~i~----------------~l-~~~~~l~~~~~~~L~~f 318 (1006)
...-..+++|++.++.. ....... .+ .-++-. +=++.++ ++ ..++..++.--+.+.+.
T Consensus 268 T~AmSLlYECvNTVVa~-s~s~g~~-d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrc 344 (877)
T KOG1059|consen 268 TVAMSLLYECVNTVVAV-SMSSGMS-DH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRC 344 (877)
T ss_pred hHHHHHHHHHHHHheee-hhccCCC-Cc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHH
Confidence 22334567777777632 0000000 01 111211 1111111 11 12334555555677778
Q ss_pred hcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhh----
Q 001845 319 IAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLS---- 394 (1006)
Q Consensus 319 L~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~---- 394 (1006)
|...|.+||.=+|+.+.-|+........|+.-.. ...+.++...|-.-+.-+..+|..+|...|.+- -=|+.
T Consensus 345 L~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~---~~~~ae~t~yrdell~~II~iCS~snY~~ItdF-EWYlsVlve 420 (877)
T KOG1059|consen 345 LDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMK---HVEKAEGTNYRDELLTRIISICSQSNYQYITDF-EWYLSVLVE 420 (877)
T ss_pred hccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHhccchhHHHHHHHHHHHHhhhhhhhhhhhH-HHHHHHHHH
Confidence 8899999999999999999987643344443322 233445567888889999999999999988762 11221
Q ss_pred ---hcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhc
Q 001845 395 ---TADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKA 433 (1006)
Q Consensus 395 ---~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~ 433 (1006)
-.-.+.-..+...|..++.|-+.-...-|+.+..|+..+
T Consensus 421 La~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~ 462 (877)
T KOG1059|consen 421 LARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDP 462 (877)
T ss_pred HHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhch
Confidence 112233444555666677777777778888888888743
No 25
>PRK09687 putative lyase; Provisional
Probab=98.19 E-value=0.00021 Score=79.07 Aligned_cols=240 Identities=19% Similarity=0.168 Sum_probs=161.4
Q ss_pred HHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHH
Q 001845 107 LAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWAD 186 (1006)
Q Consensus 107 LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~ 186 (1006)
+.++.+.+=|.|.|..+|-.|+..|+.+++++..+.+ .+++. +.++.||+.|+-+|..+=. ++... ....+
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l----~~ll~--~~d~~vR~~A~~aLg~lg~--~~~~~-~~a~~ 93 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLA----IELCS--SKNPIERDIGADILSQLGM--AKRCQ-DNVFN 93 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHH----HHHHh--CCCHHHHHHHHHHHHhcCC--Cccch-HHHHH
Confidence 3455566778999999999999999999986655554 45565 6799999999999988632 22111 23456
Q ss_pred HHHhh-hcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHH
Q 001845 187 RMAQL-LDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLF 265 (1006)
Q Consensus 187 ~l~~l-L~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~ 265 (1006)
.+..+ ++|+|+.|..+|+..|-+++.... .| .++ ..
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-----------------------~~----------------~~~----a~ 130 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP-----------------------LY----------------SPK----IV 130 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc-----------------------cc----------------chH----HH
Confidence 66666 689999999999888876542111 01 011 11
Q ss_pred HHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHH
Q 001845 266 EVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHD 345 (1006)
Q Consensus 266 ~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~ 345 (1006)
+.+...+. +. ..-|-+.++..+..+... .++..|..+|...++.+|+-+...|..+.... +.
T Consensus 131 ~~l~~~~~---------D~--~~~VR~~a~~aLg~~~~~-----~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--~~ 192 (280)
T PRK09687 131 EQSQITAF---------DK--STNVRFAVAFALSVINDE-----AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--PD 192 (280)
T ss_pred HHHHHHhh---------CC--CHHHHHHHHHHHhccCCH-----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--HH
Confidence 11211221 11 235777777777666642 36788999999999999999999999883322 22
Q ss_pred HHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHH
Q 001845 346 IIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDV 425 (1006)
Q Consensus 346 ~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ 425 (1006)
.+ ..++..|.|.|..||..|+.-|-.+.++. .+.-|++++...+ ++..++.+++.+..+ -.+..
T Consensus 193 ~~----~~L~~~L~D~~~~VR~~A~~aLg~~~~~~----av~~Li~~L~~~~--~~~~a~~ALg~ig~~------~a~p~ 256 (280)
T PRK09687 193 IR----EAFVAMLQDKNEEIRIEAIIGLALRKDKR----VLSVLIKELKKGT--VGDLIIEAAGELGDK------TLLPV 256 (280)
T ss_pred HH----HHHHHHhcCCChHHHHHHHHHHHccCChh----HHHHHHHHHcCCc--hHHHHHHHHHhcCCH------hHHHH
Confidence 33 23677789999999999999999887764 5666666666544 566677777766542 35666
Q ss_pred HHHHHHh
Q 001845 426 ILQLIDK 432 (1006)
Q Consensus 426 ll~ll~~ 432 (1006)
|.+++..
T Consensus 257 L~~l~~~ 263 (280)
T PRK09687 257 LDTLLYK 263 (280)
T ss_pred HHHHHhh
Confidence 6666653
No 26
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.17 E-value=2.1e-05 Score=81.19 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=85.9
Q ss_pred ChhHHhHHHHhhh--cCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCCh
Q 001845 120 NETFQCLALTMVG--NIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDL 197 (1006)
Q Consensus 120 n~~~~~lAL~~l~--~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~ 197 (1006)
||.+|+.|+.++| .++-+.+++...+.+.++|. |.+|.|||.|++++.+|...+.-.++ +.....+..+|.|+|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKVK-GQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHHHcCCCH
Confidence 6789999999999 56669999999999999998 78999999999999999998776666 4555677788999999
Q ss_pred hHHHHHHHHHHHHHhc-ChhhhhccC
Q 001845 198 GVLTSSMSLLVALVSN-NHEAYWSCL 222 (1006)
Q Consensus 198 ~V~~~a~~ll~~I~~~-~~~~~~~~v 222 (1006)
.|...|..++.++... +|..+.+.+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999999987 666554433
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.10 E-value=0.0086 Score=72.06 Aligned_cols=263 Identities=16% Similarity=0.208 Sum_probs=162.1
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCC---ccccCcHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 001845 134 IGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPD---VVNVDGWADRMAQLLDERDLGVLTSSMSLLVAL 210 (1006)
Q Consensus 134 i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~---~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I 210 (1006)
....++.+.+.+.+.++|. |.++.||.-|+-.+.|+.+.... .+...+....+..+|.|.|..|...|+.++..+
T Consensus 69 ~~~~~l~~~~~~~L~~gL~--h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l 146 (503)
T PF10508_consen 69 LSPDSLLPQYQPFLQRGLT--HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKL 146 (503)
T ss_pred cCHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3345568899999999997 67999999999999998876543 233467889999999999999999999999999
Q ss_pred HhcChhhhhcc-----CCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHH--HHHHHHccCCccccccc
Q 001845 211 VSNNHEAYWSC-----LPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFE--VLQRILMGTDVVKNVNK 283 (1006)
Q Consensus 211 ~~~~~~~~~~~-----v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~--~l~~il~~~~~~~~~~~ 283 (1006)
+++.+. +..+ +..+ . .....+++-..++++.++..+... .++..+.+.+ ++..++...+.
T Consensus 147 ~~~~~~-~~~l~~~~~~~~L---~--~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~eL~~------ 213 (503)
T PF10508_consen 147 ASHPEG-LEQLFDSNLLSKL---K--SLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLKELDS------ 213 (503)
T ss_pred hCCchh-HHHHhCcchHHHH---H--HHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHHHhcC------
Confidence 986542 2222 1111 0 011234667778888888877654 4555555544 56665532111
Q ss_pred CCChhHHHHHHHHHHHhcCCcH---HH--HHHHHHHHHHhhcCC--CC---chhHHHH-HHHHHHHccCCcH--HHHHHh
Q 001845 284 NNASHAVLFEALALVMHLDAEK---EM--MSQCIALLGKFIAVR--EP---NIRYLGL-ENMTRMLMVTDVH--DIIKRH 350 (1006)
Q Consensus 284 ~n~~~aVl~eai~~i~~l~~~~---~l--~~~~~~~L~~fL~s~--~~---nirylaL-~~L~~l~~~~~~~--~~v~~~ 350 (1006)
...=|-..|+.++..+...+ +. ....++.|..++... || .+...+. .-...++..+|.. ......
T Consensus 214 --dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~ 291 (503)
T PF10508_consen 214 --DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAF 291 (503)
T ss_pred --ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHH
Confidence 12234445666666654322 11 223556666666532 33 1222222 3444455543321 112234
Q ss_pred HHHhhhcccCcChhHHHHHHHHhhhccCcccH------------HHHHHHHHHHhhhcChHhHHHHHHHHHHHHh
Q 001845 351 QAQIITSLKDPDISIRRRALDLLYGMCDVSNA------------KDIVEELLQYLSTADFAMREELSLKAAILAE 413 (1006)
Q Consensus 351 ~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv------------~~Iv~eLl~yl~~~d~~~~~~lv~~I~~lae 413 (1006)
...++.++.+.|..++--|+|.+-.+|...-- +.+++.+..+......++|...+.+++.+-.
T Consensus 292 ~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 292 LERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 44567777889999999999998877744333 3334444445555566777777777776643
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.017 Score=66.97 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=158.8
Q ss_pred HhhcCCCChhHHhHH---HHhhhcCCCHHh----HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc---ccC
Q 001845 113 RNDIIGRNETFQCLA---LTMVGNIGGREF----AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV---NVD 182 (1006)
Q Consensus 113 ~KDL~s~n~~~~~lA---L~~l~~i~~~e~----~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v---~~~ 182 (1006)
.|=..+++..+++.| =|.+-.|..++- .+.++|-+..-+- +.+|+.|.- ++..++.+...|+.- -.+
T Consensus 131 ~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy--~~n~~tR~f-lv~Wl~~Lds~P~~~m~~yl~ 207 (675)
T KOG0212|consen 131 CKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIY--VINPMTRQF-LVSWLYVLDSVPDLEMISYLP 207 (675)
T ss_pred HHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHh--cCCchHHHH-HHHHHHHHhcCCcHHHHhcch
Confidence 343444555555433 233333333222 3556666655554 578988765 566666666777631 114
Q ss_pred cHHHHHHhhhcCCChhHHHHHH----HHHHHHHhcChh--hhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCC
Q 001845 183 GWADRMAQLLDERDLGVLTSSM----SLLVALVSNNHE--AYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVE 256 (1006)
Q Consensus 183 ~~~~~l~~lL~d~d~~V~~~a~----~ll~~I~~~~~~--~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~ 256 (1006)
.+.+.+.++|+|+++.|..-+= .++.+|. ..|. .|...++.+ -.-...+.|++|.+.|.-++.|.+..
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~-s~P~s~d~~~~i~vl-----v~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR-SSPSSMDYDDMINVL-----VPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-cCccccCcccchhhc-----cccccCCcHHHHHHHHHHHHHHhcCC
Confidence 7888899999999999874333 4455555 3343 355554433 11234689999999999998776653
Q ss_pred ChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcH-----HHHHHHHHHHHHhhcCCCCchhHHHH
Q 001845 257 DPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEK-----EMMSQCIALLGKFIAVREPNIRYLGL 331 (1006)
Q Consensus 257 d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~-----~l~~~~~~~L~~fL~s~~~nirylaL 331 (1006)
.+...-.+..|+..+|........ +|+ .-+-+..-..++.+-.+. -.....++.|.++++++.-+.|..+|
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e~---~~i-~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L 357 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTEE---MSI-KEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVL 357 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCcc---ccH-HHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHH
Confidence 344444455777777632211111 011 111122222334432221 12347889999999989899999999
Q ss_pred HHHHHHHccCCcHHHHHHhHHHhh----hcccCcChhHHHHHHHHhhhccCcccHHHHHH
Q 001845 332 ENMTRMLMVTDVHDIIKRHQAQII----TSLKDPDISIRRRALDLLYGMCDVSNAKDIVE 387 (1006)
Q Consensus 332 ~~L~~l~~~~~~~~~v~~~~~~i~----~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~ 387 (1006)
+.+..|-.+.|. .+..|...|| ..|.|++--+-.++|.+|-.+|+.+|-....+
T Consensus 358 ~Wi~~l~~~~p~--ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~ 415 (675)
T KOG0212|consen 358 NWIILLYHKAPG--QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRK 415 (675)
T ss_pred HHHHHHHhhCcc--hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHH
Confidence 999999988764 3444555544 45668888899999999999998887754433
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.06 E-value=0.00061 Score=87.61 Aligned_cols=272 Identities=15% Similarity=0.078 Sum_probs=186.1
Q ss_pred HHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHh
Q 001845 73 MEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLII 152 (1006)
Q Consensus 73 ~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~ 152 (1006)
...+..+.+++...|+.+-..+..+.. ++ ++..|.+-|.|+++.+|..|+.+|+.+....- -.+.+.+.|.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~----~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---~~~~L~~~L~ 694 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP--PG----FGPALVAALGDGAAAVRRAAAEGLRELVEVLP---PAPALRDHLG 694 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc--hh----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---chHHHHHHhc
Confidence 355677789999999988887777643 22 45566777889999999999999987742110 1234556675
Q ss_pred cCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCcccc
Q 001845 153 SSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYT 232 (1006)
Q Consensus 153 s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~ 232 (1006)
+.++.||..|+.+|-.+-.. . ...+..+|.|+|+.|-.+|+..|-.+.. ++.. ..
T Consensus 695 --~~d~~VR~~A~~aL~~~~~~--------~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~--~~~l---~~--------- 749 (897)
T PRK13800 695 --SPDPVVRAAALDVLRALRAG--------D-AALFAAALGDPDHRVRIEAVRALVSVDD--VESV---AG--------- 749 (897)
T ss_pred --CCCHHHHHHHHHHHHhhccC--------C-HHHHHHHhcCCCHHHHHHHHHHHhcccC--cHHH---HH---------
Confidence 57899999999887765311 1 2345678899999999999888876522 2221 11
Q ss_pred ccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHH
Q 001845 233 YYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCI 312 (1006)
Q Consensus 233 ~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~ 312 (1006)
....++|+......+-|...... ++.. .+.|..++... ...|-..|+..+-.+.....+ .
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~-~~~~----~~~L~~ll~D~-----------d~~VR~aA~~aLg~~g~~~~~----~ 809 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAG-GAPA----GDAVRALTGDP-----------DPLVRAAALAALAELGCPPDD----V 809 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhccc-cchh----HHHHHHHhcCC-----------CHHHHHHHHHHHHhcCCcchh----H
Confidence 12456888888888888876543 2211 13344455221 247888888888887654332 3
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHH
Q 001845 313 ALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQY 392 (1006)
Q Consensus 313 ~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~y 392 (1006)
..|...|.+.++.+|..++..|..+... +.+ ..+..+|+|+|..||+.|+..|-.+-... ..+..|..-
T Consensus 810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~~~----~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~~~~---~a~~~L~~a 878 (897)
T PRK13800 810 AAATAALRASAWQVRQGAARALAGAAAD----VAV----PALVEALTDPHLDVRKAAVLALTRWPGDP---AARDALTTA 878 (897)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhcccc----chH----HHHHHHhcCCCHHHHHHHHHHHhccCCCH---HHHHHHHHH
Confidence 4577778888899999999999887542 233 34678889999999999999998873232 244445556
Q ss_pred hhhcChHhHHHHHHHHH
Q 001845 393 LSTADFAMREELSLKAA 409 (1006)
Q Consensus 393 l~~~d~~~~~~lv~~I~ 409 (1006)
+.+.|.++|.+.+.++.
T Consensus 879 l~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 879 LTDSDADVRAYARRALA 895 (897)
T ss_pred HhCCCHHHHHHHHHHHh
Confidence 66789999999888775
No 30
>PRK09687 putative lyase; Provisional
Probab=98.05 E-value=0.00066 Score=75.11 Aligned_cols=238 Identities=12% Similarity=0.124 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhc-ccCcChhHHH
Q 001845 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITS-LKDPDISIRR 367 (1006)
Q Consensus 289 aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~-L~d~D~sIr~ 367 (1006)
-|-.+++..+-.++... +...+..++.+.++.+|..+...|.+|-..... ..+....+... ++|+|..||.
T Consensus 38 ~vR~~A~~aL~~~~~~~-----~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 38 LKRISSIRVLQLRGGQD-----VFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred HHHHHHHHHHHhcCcch-----HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHhcCCCHHHHH
Confidence 68888888888887532 455667778889999999999999998653210 11112222323 6899999999
Q ss_pred HHHHHhhhccCccc--HHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHH
Q 001845 368 RALDLLYGMCDVSN--AKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRV 445 (1006)
Q Consensus 368 ~aL~lL~~l~n~~N--v~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i 445 (1006)
.++..|-.+|.... -...+..+...+.+.+..+|..++.+++.+. ..-.++.|+.++......|....+..+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999987654 2456777777888888899998888887543 235789999999877666777777766
Q ss_pred HHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHH
Q 001845 446 VQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTY 525 (1006)
Q Consensus 446 ~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~ 525 (1006)
-++-... +.+...|...|.+. .+.+-+.++|-||+.++. +.+..|.+.... +.++..+..++
T Consensus 184 g~~~~~~----~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~~----------~av~~Li~~L~~--~~~~~~a~~AL 245 (280)
T PRK09687 184 NSNKYDN----PDIREAFVAMLQDK--NEEIRIEAIIGLALRKDK----------RVLSVLIKELKK--GTVGDLIIEAA 245 (280)
T ss_pred hcCCCCC----HHHHHHHHHHhcCC--ChHHHHHHHHHHHccCCh----------hHHHHHHHHHcC--CchHHHHHHHH
Confidence 6651112 24667788888775 333444579999998762 234444444333 23677788888
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 001845 526 AKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFA 567 (1006)
Q Consensus 526 ~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~ 567 (1006)
.. +.. ++..+.+..+++ .+.|.+++.+|.|-++
T Consensus 246 g~----ig~--~~a~p~L~~l~~---~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 246 GE----LGD--KTLLPVLDTLLY---KFDDNEIITKAIDKLK 278 (280)
T ss_pred Hh----cCC--HhHHHHHHHHHh---hCCChhHHHHHHHHHh
Confidence 88 542 444444444433 4669999999987653
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0014 Score=75.39 Aligned_cols=336 Identities=20% Similarity=0.201 Sum_probs=202.8
Q ss_pred ChhHHHHHHHHHHhhcC-CCCh-----hHHhHHHHhhhc-CCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 001845 101 NHDFLRLAINTVRNDII-GRNE-----TFQCLALTMVGN-IGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYR 173 (1006)
Q Consensus 101 ~~e~~~LviNsl~KDL~-s~n~-----~~~~lAL~~l~~-i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~ 173 (1006)
+.+-..=+|..+-+|.. +++. -..|+|...+|- ..+....+.+.++|..++. |.+.-||=-|+-+++.+-+
T Consensus 36 ~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~--D~d~~vRyyACEsLYNiaK 113 (675)
T KOG0212|consen 36 DYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS--DQDSQVRYYACESLYNIAK 113 (675)
T ss_pred cHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc--CccceeeeHhHHHHHHHHH
Confidence 44555666666667754 3322 234555555543 1222357788889999986 7788899999999999998
Q ss_pred hCCCcccc--CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhc----Chhhh--hccCCCCCCCccccccCCCChhHHHHH
Q 001845 174 KNPDVVNV--DGWADRMAQLLDERDLGVLTSSMSLLVALVSN----NHEAY--WSCLPKCDVPQEYTYYGIPSPWLQVKT 245 (1006)
Q Consensus 174 ~~p~~v~~--~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~----~~~~~--~~~v~~l~~~~ey~~~~~~~pwlqvkl 245 (1006)
..-..+.. +...+-+-++..|+|..|-.+| -++..+.++ ....| ..++|.+ .|+.| +.+|..-..+
T Consensus 114 v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL---~eriy--~~n~~tR~fl 187 (675)
T KOG0212|consen 114 VAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLL---RERIY--VINPMTRQFL 187 (675)
T ss_pred HhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHH---HHHHh--cCCchHHHHH
Confidence 88765531 2334455556679999998766 444444433 22222 2344443 33333 2378888888
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHc-cCCcccccccCCChhHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHhhcCC
Q 001845 246 MRALQYFPTVEDPNTRRSLFEVLQRILM-GTDVVKNVNKNNASHAVLFEALALVMHLDAEKE--MMSQCIALLGKFIAVR 322 (1006)
Q Consensus 246 LrlL~~~~~~~d~~~~~~l~~~l~~il~-~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~--l~~~~~~~L~~fL~s~ 322 (1006)
+.-+..+-...|-+.-..+-+++.-+++ -.|..+.++.- ...++.|-.. .+.++++ -....++.|+.-+.++
T Consensus 188 v~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~--~~t~l~~fL~---eI~s~P~s~d~~~~i~vlv~~l~ss 262 (675)
T KOG0212|consen 188 VSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTL--TDTLLSEFLA---EIRSSPSSMDYDDMINVLVPHLQSS 262 (675)
T ss_pred HHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHH--HHHHHHHHHH---HHhcCccccCcccchhhccccccCC
Confidence 7777755433344444434344443331 11211111100 1122222222 1222221 2445678888888999
Q ss_pred CCchhHHHHHHHHHHHccCCcH--HHHHHhHHHhhhcccCcCh-hHHHHHH---HHhhhccCcccHH------HHHHHHH
Q 001845 323 EPNIRYLGLENMTRMLMVTDVH--DIIKRHQAQIITSLKDPDI-SIRRRAL---DLLYGMCDVSNAK------DIVEELL 390 (1006)
Q Consensus 323 ~~nirylaL~~L~~l~~~~~~~--~~v~~~~~~i~~~L~d~D~-sIr~~aL---~lL~~l~n~~Nv~------~Iv~eLl 390 (1006)
++.++-.+|..+..++...+.. -........++.|+.|.+. +|+-.|- .+|.+++++.--+ .|++-|.
T Consensus 263 ~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~ 342 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLT 342 (675)
T ss_pred cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH
Confidence 9999999999999999986531 1233455667899998887 4655443 3577777665444 8999999
Q ss_pred HHhhhcChHhHHHHHHHHHHHHhhcCCChh----hHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 001845 391 QYLSTADFAMREELSLKAAILAEKFAPDLS----WYVDVILQLIDKAGDFVSDDIWFRVVQFV 449 (1006)
Q Consensus 391 ~yl~~~d~~~~~~lv~~I~~laeky~~~~~----w~vd~ll~ll~~~g~~v~~ei~~~i~~ii 449 (1006)
+|+.....+-|..+..-|..+-.|++...- -...++++-|+...+.|..-....+..|.
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 999998889999998889888888875443 34455555555554444433344444433
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.016 Score=68.25 Aligned_cols=391 Identities=14% Similarity=0.193 Sum_probs=223.2
Q ss_pred CCCCCcHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCC---CCCchHHH-H---
Q 001845 3 LSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGY---DVDFGHME-A--- 75 (1006)
Q Consensus 3 ~~~mrgL~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~---dv~f~~~~-v--- 75 (1006)
|++|++.-+|+-.. .++..|+ |.-|--|-=-.|.+. .+-..--..|+.||+=+...|- |.|..... .
T Consensus 251 ~phl~~IveyML~~--tqd~dE~---VALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQR--TQDVDEN---VALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred ccchHHHHHHHHHH--ccCcchh---HHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 46777777777543 2333333 666666666667665 4545556788999998888773 23322222 0
Q ss_pred ----------------HHhccC--------------------CCcCchhhhHHHHHhhcccC-hhHHHHHHHHHHhhcCC
Q 001845 76 ----------------VSLISA--------------------PKYPEKQVGYIVTSCLLNEN-HDFLRLAINTVRNDIIG 118 (1006)
Q Consensus 76 ----------------i~L~~S--------------------~~~~~KrlgYL~l~~l~~~~-~e~~~LviNsl~KDL~s 118 (1006)
-+.-.+ ++..+||.---++-.+.+-- +|++-.+-.-++.-|.+
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~ 404 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS 404 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc
Confidence 000000 11445666656666665553 45555556666666777
Q ss_pred CChhHHhHHHHhhhcCCC---HHh---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhh
Q 001845 119 RNETFQCLALTMVGNIGG---REF---AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLL 192 (1006)
Q Consensus 119 ~n~~~~~lAL~~l~~i~~---~e~---~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL 192 (1006)
.+=.+|-.++=++|-|.. .-| .+.++|.+..+|. |+.|.||+.++=++.|.-+---+.-+.+-|.+.+..+|
T Consensus 405 ~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~--DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 405 EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD--DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc--cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 666666655555555544 333 3567888888886 78999999888887765432211112123444444444
Q ss_pred ---cCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCC-------------
Q 001845 193 ---DERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVE------------- 256 (1006)
Q Consensus 193 ---~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~------------- 256 (1006)
-|+|--|+-||++++..+-.+- ...++|.+ . .+.-.+.+.+++|.+.+
T Consensus 483 ~~llD~NK~VQEAAcsAfAtleE~A---~~eLVp~l------------~-~IL~~l~~af~kYQ~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 483 RRLLDSNKKVQEAACSAFATLEEEA---GEELVPYL------------E-YILDQLVFAFGKYQKKNLLILYDAIGTLAD 546 (885)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhc---cchhHHHH------------H-HHHHHHHHHHHHHhhcceehHHHHHHHHHH
Confidence 4889999999998887766543 22344432 1 12234555555555431
Q ss_pred -------ChhhHHHHHH-HHHHHHccCCcccccccCCChhHHHHHHHHHHHh-c-----CCcHHHHHHHHHHHHHhh---
Q 001845 257 -------DPNTRRSLFE-VLQRILMGTDVVKNVNKNNASHAVLFEALALVMH-L-----DAEKEMMSQCIALLGKFI--- 319 (1006)
Q Consensus 257 -------d~~~~~~l~~-~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~-l-----~~~~~l~~~~~~~L~~fL--- 319 (1006)
++...+.|+. .+++.-.-.|.-|+ .--++||...+.. + +-.....++|++.|++-+
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd-------LfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~ 619 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSDSDKD-------LFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLL 619 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCcccch-------HHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH
Confidence 2222222221 12222111121222 2567788777654 2 224567788888877422
Q ss_pred ---------cCCCCchhHHHHHHHHHHHccCCc--HHHHH--HhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHH
Q 001845 320 ---------AVREPNIRYLGLENMTRMLMVTDV--HDIIK--RHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIV 386 (1006)
Q Consensus 320 ---------~s~~~nirylaL~~L~~l~~~~~~--~~~v~--~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv 386 (1006)
...|.+.-.++|+.+.-|++--+. ...|. +-..-++.|+.|.-+.+|.-+.-||-.||-.= .+.+.
T Consensus 620 ~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c-~~~v~ 698 (885)
T KOG2023|consen 620 AKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC-FEHVI 698 (885)
T ss_pred HhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHhcc
Confidence 124566777889999988873221 12333 23445679999999999999999988776442 33333
Q ss_pred HHHHHH---hhh-cCh---HhHHHHHHHHHHHHhhcCCChhhHHHH
Q 001845 387 EELLQY---LST-ADF---AMREELSLKAAILAEKFAPDLSWYVDV 425 (1006)
Q Consensus 387 ~eLl~y---l~~-~d~---~~~~~lv~~I~~laeky~~~~~w~vd~ 425 (1006)
..+-+| +.. -+. .....++-+||.+|.|+-.+..-||.-
T Consensus 699 p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~ 744 (885)
T KOG2023|consen 699 PNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSP 744 (885)
T ss_pred chHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 333333 332 233 456678888999999987665544433
No 33
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0012 Score=78.80 Aligned_cols=290 Identities=17% Similarity=0.228 Sum_probs=187.6
Q ss_pred cCCCChhHHHHHHHHHhcCCCCCChhhHH---HH-----HHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcH
Q 001845 234 YGIPSPWLQVKTMRALQYFPTVEDPNTRR---SL-----FEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEK 305 (1006)
Q Consensus 234 ~~~~~pwlqvklLrlL~~~~~~~d~~~~~---~l-----~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~ 305 (1006)
.|.|+-|+|+.+|+++..=.-. |.++.- +| -|++- +++++ -.+.++|.|- -|+--|..++..+.+ .
T Consensus 64 LGypahFGqieclKLias~~f~-dKRiGYLaamLlLdE~qdvll-LltNs-lknDL~s~nq--~vVglAL~alg~i~s-~ 137 (866)
T KOG1062|consen 64 LGYPAHFGQIECLKLIASDNFL-DKRIGYLAAMLLLDERQDLLL-LLTNS-LKNDLNSSNQ--YVVGLALCALGNICS-P 137 (866)
T ss_pred hCCCccchhhHHHHHhcCCCch-HHHHHHHHHHHHhccchHHHH-HHHHH-HHhhccCCCe--eehHHHHHHhhccCC-H
Confidence 4678999999999998742211 222110 00 01111 11111 0145777773 344445555555554 4
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHH
Q 001845 306 EMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDI 385 (1006)
Q Consensus 306 ~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~I 385 (1006)
|+..-...-..++|.++++++|==|.-+..++..+.| +.++.+....-..|.|.+.-|=.-.+.+++.||..+-
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~---- 211 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP---- 211 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH----
Confidence 5555566667778888999999999999999999876 5677777777788899998888889999999887653
Q ss_pred HHHHHHHhhhcChHhHHHHHHHHHHHHh-hcCCChh-------hHHHHHHHHHHhcCC---cchHHHHHHHHHHHhcCCC
Q 001845 386 VEELLQYLSTADFAMREELSLKAAILAE-KFAPDLS-------WYVDVILQLIDKAGD---FVSDDIWFRVVQFVTNNED 454 (1006)
Q Consensus 386 v~eLl~yl~~~d~~~~~~lv~~I~~lae-ky~~~~~-------w~vd~ll~ll~~~g~---~v~~ei~~~i~~ii~~~~~ 454 (1006)
+.+.|.++ +...+|..+..+.. +|++.+. |.=--+|++|+.=|. -.++-.-+.+.|+.+|.+.
T Consensus 212 --~~l~~fr~----l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntds 285 (866)
T KOG1062|consen 212 --DALSYFRD----LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDS 285 (866)
T ss_pred --HHHHHHHH----HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccc
Confidence 56677665 56666777776664 6776543 433344566666542 2445555566677776554
Q ss_pred cHH------H-HHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001845 455 LQP------Y-AAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAK 527 (1006)
Q Consensus 455 l~~------~-a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~K 527 (1006)
-+- | ++..++.+..+. .+.-.++-|||.|-- ..+..+|-..|+++.|
T Consensus 286 skN~GnAILYE~V~TI~~I~~~~----~LrvlainiLgkFL~----------------------n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 286 SKNAGNAILYECVRTIMDIRSNS----GLRVLAINILGKFLL----------------------NRDNNIRYVALNMLLR 339 (866)
T ss_pred cccchhHHHHHHHHHHHhccCCc----hHHHHHHHHHHHHhc----------------------CCccceeeeehhhHHh
Confidence 222 1 344444333332 222236777777632 1234567778999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc
Q 001845 528 ILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 528 l~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
....+|....+-...+-.|..|.|+-+|-||.|..-.+-.
T Consensus 340 ----~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 340 ----VVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred ----hhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 5666788888888888899999999999999999655543
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.02 Score=67.07 Aligned_cols=290 Identities=16% Similarity=0.227 Sum_probs=181.9
Q ss_pred ccChhHHHHHHHHHHhhcCCC-ChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCC
Q 001845 99 NENHDFLRLAINTVRNDIIGR-NETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPD 177 (1006)
Q Consensus 99 ~~~~e~~~LviNsl~KDL~s~-n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~ 177 (1006)
..+++..+-.+..++|-+... ||-+ ..++.+ -+.+.+.+++.. +.+|-++--|+-|+..+-....+
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi-~~vi~~-----------G~v~~lV~~l~~-~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPI-DEVIQS-----------GVVPRLVEFLSR-DDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCH-HHHHHc-----------CcHHHHHHHHcc-CCChhHHHHHHHHHHHHhcCchh
Confidence 344555666777777777653 3222 222222 345566666653 67899999999999999987664
Q ss_pred ---ccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCC-CCccccccCCCChh-HHHHHHHHHhcC
Q 001845 178 ---VVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCD-VPQEYTYYGIPSPW-LQVKTMRALQYF 252 (1006)
Q Consensus 178 ---~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~-~~~ey~~~~~~~pw-lqvklLrlL~~~ 252 (1006)
.+.+.+-.+.+..||.+++..|.--|+-+|-.|+.+.+. |+..+-..+ ..+=-......++. ..-.+.-.|..+
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL 222 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH
Confidence 344467889999999999999999999999999877653 222211100 00000000111220 111223333444
Q ss_pred CCCCCh----hhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCC-cHHHH-----HHHHHHHHHhhcCC
Q 001845 253 PTVEDP----NTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA-EKEMM-----SQCIALLGKFIAVR 322 (1006)
Q Consensus 253 ~~~~d~----~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~-~~~l~-----~~~~~~L~~fL~s~ 322 (1006)
++..+| .....+..+|..++..+| .-|+-.|.=.+.+|.. +.+.+ ...+..|..+|.+.
T Consensus 223 crgk~P~P~~~~v~~iLp~L~~ll~~~D-----------~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~ 291 (514)
T KOG0166|consen 223 CRGKNPSPPFDVVAPILPALLRLLHSTD-----------EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS 291 (514)
T ss_pred HcCCCCCCcHHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC
Confidence 443221 233345566666665443 3677777777776642 22322 24567788899999
Q ss_pred CCchhHHHHHHHHHHHccCCcH-HHHHH--hHHHhhhccc-CcChhHHHHHHHHhhhccCcccH---H-----HHHHHHH
Q 001845 323 EPNIRYLGLENMTRMLMVTDVH-DIIKR--HQAQIITSLK-DPDISIRRRALDLLYGMCDVSNA---K-----DIVEELL 390 (1006)
Q Consensus 323 ~~nirylaL~~L~~l~~~~~~~-~~v~~--~~~~i~~~L~-d~D~sIr~~aL~lL~~l~n~~Nv---~-----~Iv~eLl 390 (1006)
+++++--+|+++..++.-++.. +.+-. -...+..++. .+..+||+.|.=++..++. .|. + .++..|+
T Consensus 292 ~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li 370 (514)
T KOG0166|consen 292 SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLI 370 (514)
T ss_pred CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHH
Confidence 9999999999999988755421 22221 2334455566 5556699999999998875 444 2 3466888
Q ss_pred HHhhhcChHhHHHHHHHHHHHHhh
Q 001845 391 QYLSTADFAMREELSLKAAILAEK 414 (1006)
Q Consensus 391 ~yl~~~d~~~~~~lv~~I~~laek 414 (1006)
.-+..+|+.+|.|++-+|+.++..
T Consensus 371 ~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 371 NLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHhccchHHHHHHHHHHHhhccc
Confidence 888899999999999999988754
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.003 Score=74.01 Aligned_cols=376 Identities=15% Similarity=0.212 Sum_probs=182.3
Q ss_pred CHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCh
Q 001845 136 GREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNH 215 (1006)
Q Consensus 136 ~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~ 215 (1006)
.++...++-..+.+.+- ++++.||-..-+-+..+.....-.-- .+..+.+.++|+..|....-.|+.+|..||.+.+
T Consensus 84 ~~~~~~yiKs~~l~~lg--d~~~lIr~tvGivITTI~s~~~~~~w-pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLG--DASPLIRATVGIVITTIASTGGLQHW-PELLPQLCELLDSPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred ChHHHHHHHHHHHhhcc--CchHHHHhhhhheeeeeecccccccc-hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence 34667777777777775 77888887776666655544321111 2445677888888998888899999999999887
Q ss_pred hhhhc---------cCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH-ccCCcccccccCC
Q 001845 216 EAYWS---------CLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRIL-MGTDVVKNVNKNN 285 (1006)
Q Consensus 216 ~~~~~---------~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il-~~~~~~~~~~~~n 285 (1006)
+.+.. ++|++ ..|+..++|=+-...+..+..|.....+...-.+..+++.+. -++|..+.++++
T Consensus 161 ~~lds~~~~rpl~~mipkf-----l~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~- 234 (885)
T KOG2023|consen 161 QFLDSDVLTRPLNIMIPKF-----LQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKN- 234 (885)
T ss_pred HHHhhhcccCchHHhHHHH-----HHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHH-
Confidence 76533 12221 123333444444444444444433222222222333333322 122222222111
Q ss_pred ChhHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcc-----
Q 001845 286 ASHAVLFEALALVMHLDAEK--EMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSL----- 358 (1006)
Q Consensus 286 ~~~aVl~eai~~i~~l~~~~--~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L----- 358 (1006)
+..+.-.++..-++. .-+...+..+.......+-|+-.=|-+-...++...--.+.+++|..+++-.|
T Consensus 235 -----vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~ 309 (885)
T KOG2023|consen 235 -----VCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMV 309 (885)
T ss_pred -----HHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCc
Confidence 111111111111100 00112222222222233334333333333344433211234556665554332
Q ss_pred -cCcChhHHHHHHHHhhhccCcc--cH----HHHHHHHHH---Hh------hh-cC------------hHhHHHHHHHHH
Q 001845 359 -KDPDISIRRRALDLLYGMCDVS--NA----KDIVEELLQ---YL------ST-AD------------FAMREELSLKAA 409 (1006)
Q Consensus 359 -~d~D~sIr~~aL~lL~~l~n~~--Nv----~~Iv~eLl~---yl------~~-~d------------~~~~~~lv~~I~ 409 (1006)
.|.|+. |.. -+++ .+ +.|-..+-+ +- .+ .| -.+|+-...++.
T Consensus 310 Ysd~D~~--------LL~-~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLD 380 (885)
T KOG2023|consen 310 YSDDDII--------LLK-NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALD 380 (885)
T ss_pred cccccHH--------Hhc-CccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHH
Confidence 122211 111 0000 00 000000000 00 00 00 147888889999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhcCC----cchHHHHHHHHHHHhc-----CCCcHHHHHHHHHHhhcCCchhhHHHHH-
Q 001845 410 ILAEKFAPDLSWYVDVILQLIDKAGD----FVSDDIWFRVVQFVTN-----NEDLQPYAAAKAREYLDKPAIHETMVKV- 479 (1006)
Q Consensus 410 ~laeky~~~~~w~vd~ll~ll~~~g~----~v~~ei~~~i~~ii~~-----~~~l~~~a~~~l~~~L~~~~~~e~l~k~- 479 (1006)
.++.-|. .-.+++++.+|+..-. .+.+.-+-.+=.|-.. +|.+-+ .+..+...|.| ..+++|.
T Consensus 381 VLanvf~---~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe-Lip~l~~~L~D---KkplVRsI 453 (885)
T KOG2023|consen 381 VLANVFG---DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE-LIPFLLSLLDD---KKPLVRSI 453 (885)
T ss_pred HHHHhhH---HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH-HHHHHHHHhcc---Cccceeee
Confidence 9998886 3577888888876421 1222222222222111 233322 34455566655 2344544
Q ss_pred HHhhhccccccccCCCCCChHHH----HHHHHhhCCCCChhHHHHHHHHHHHHHhhcC-CCChhHHHHHHHHHH
Q 001845 480 SAYLLGEYSHLLARRPGCSPKEI----FSIIHEKLPTVSMSTVAILLSTYAKILMHTQ-PADPELQNQIWAIFN 548 (1006)
Q Consensus 480 ~~wilGEyg~~i~~~~~~~~~~~----~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~-~~~~e~~~~v~~vl~ 548 (1006)
.+|-|+.|++.+...+ ..++ +.-|.++..+.+..||....+|++- +. .-.+|+.+.+..+++
T Consensus 454 TCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAt----leE~A~~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 454 TCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFAT----LEEEAGEELVPYLEYILD 520 (885)
T ss_pred eeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHH----HHHhccchhHHHHHHHHH
Confidence 5999999999987754 3344 3445667788889999999999988 32 223556665555554
No 36
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.012 Score=70.50 Aligned_cols=271 Identities=15% Similarity=0.164 Sum_probs=178.3
Q ss_pred cCCCChhHHhHHHHhhhc-CCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcC
Q 001845 116 IIGRNETFQCLALTMVGN-IGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE 194 (1006)
Q Consensus 116 L~s~n~~~~~lAL~~l~~-i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d 194 (1006)
|.|+++-..+-|++.|-. |...+-+..++|+|.|.+. ..++-|||-..+-++|.-...||+.- -=+.-+++.|.|
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~L~D 119 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKALKD 119 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhhhcC
Confidence 677778888888876544 4444447899999999998 47999999999999999999999753 226788899999
Q ss_pred CChhHHHHHHHHHHHHHhcC--h---hhhhccCCCCCCCccccccCCCChhHHHHH-HHHHhcCCCCCChhhHHHHHHHH
Q 001845 195 RDLGVLTSSMSLLVALVSNN--H---EAYWSCLPKCDVPQEYTYYGIPSPWLQVKT-MRALQYFPTVEDPNTRRSLFEVL 268 (1006)
Q Consensus 195 ~d~~V~~~a~~ll~~I~~~~--~---~~~~~~v~~l~~~~ey~~~~~~~pwlqvkl-LrlL~~~~~~~d~~~~~~l~~~l 268 (1006)
+|+-+-..|+..|..|.-.- | ...++|+. .++|+.--.. +-+-..|.- |++....|.+++
T Consensus 120 pN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~------------D~s~yVRk~AA~AIpKLYsL--d~e~k~qL~e~I 185 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVT------------DPSPYVRKTAAHAIPKLYSL--DPEQKDQLEEVI 185 (968)
T ss_pred CcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc------------CCcHHHHHHHHHhhHHHhcC--ChhhHHHHHHHH
Confidence 99999999999998876332 2 12344443 2344432222 222223332 566666889999
Q ss_pred HHHHccCCcccccccCCChhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC---C--
Q 001845 269 QRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA-EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT---D-- 342 (1006)
Q Consensus 269 ~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~-~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~---~-- 342 (1006)
..++.-. .+ -|+=.|+-++=.+-+ .-+++-.-...|+++|-.-|-==+-+.+.+|.+-+... |
T Consensus 186 ~~LLaD~--sp---------lVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 186 KKLLADR--SP---------LVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred HHHhcCC--CC---------cchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence 9888421 11 333333333333333 23556666667777775444444556677777766432 1
Q ss_pred ----------------------cH----HHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhc
Q 001845 343 ----------------------VH----DIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTA 396 (1006)
Q Consensus 343 ----------------------~~----~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~ 396 (1006)
.+ .-++-.....=-||.+.+.++-.-.-.+.|.|+-..-+..|++-|+.-|+ .
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLr-s 333 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLR-S 333 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHh-c
Confidence 00 00111111222345688999999999999999999899999999998555 4
Q ss_pred ChHhHHHHHHHHHHHHhhcC
Q 001845 397 DFAMREELSLKAAILAEKFA 416 (1006)
Q Consensus 397 d~~~~~~lv~~I~~laeky~ 416 (1006)
..+.+..+...|+.++.+-+
T Consensus 334 ~~~vqyvvL~nIa~~s~~~~ 353 (968)
T KOG1060|consen 334 NREVQYVVLQNIATISIKRP 353 (968)
T ss_pred CCcchhhhHHHHHHHHhcch
Confidence 56777777888888876543
No 37
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.015 Score=72.72 Aligned_cols=262 Identities=16% Similarity=0.148 Sum_probs=170.9
Q ss_pred ChhHHhHHHHhhh-cCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc--CcHHHHHHhhhcCCC
Q 001845 120 NETFQCLALTMVG-NIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV--DGWADRMAQLLDERD 196 (1006)
Q Consensus 120 n~~~~~lAL~~l~-~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~--~~~~~~l~~lL~d~d 196 (1006)
|..+---||-.++ ++++..+++.+.+.+.+.+. +.+.+=|++|++|+.-+-.-+++.+.. +...+.+...|+|++
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~--S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQ--STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3333345555554 47778899999999999998 479999999999999999999887742 456777888899999
Q ss_pred hhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCC
Q 001845 197 LGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD 276 (1006)
Q Consensus 197 ~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~ 276 (1006)
|.|-++|+.++-.+..+-.. ..|.+-=. .+...|-..+..++
T Consensus 403 prVr~AA~naigQ~stdl~p-----------------------~iqk~~~e---------------~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQP-----------------------EIQKKHHE---------------RLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhcH-----------------------HHHHHHHH---------------hccHHHHHHhcccC
Confidence 99999999999887754321 11111100 01111111222211
Q ss_pred cccccccCCChhHHHHHHHHHHHh----cCCc--HHHHHHHHH-HHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHH
Q 001845 277 VVKNVNKNNASHAVLFEALALVMH----LDAE--KEMMSQCIA-LLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKR 349 (1006)
Q Consensus 277 ~~~~~~~~n~~~aVl~eai~~i~~----l~~~--~~l~~~~~~-~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~ 349 (1006)
+ .-|--.|...+.. .+.+ ..++...++ .|..++.++.+.+|-.++.+|..++.... +.|.+
T Consensus 445 ---~-------~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~--~~F~p 512 (1075)
T KOG2171|consen 445 ---N-------VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ--EKFIP 512 (1075)
T ss_pred ---c-------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh--hhhHh
Confidence 1 0222222222222 1111 123444455 55666778889999999999999987442 34555
Q ss_pred hHHHhhhccc--------CcChhHHHHHHHHhhhccC---cccHHHHHHHHHHHhh-------hcChHhHHHHHHHHHHH
Q 001845 350 HQAQIITSLK--------DPDISIRRRALDLLYGMCD---VSNAKDIVEELLQYLS-------TADFAMREELSLKAAIL 411 (1006)
Q Consensus 350 ~~~~i~~~L~--------d~D~sIr~~aL~lL~~l~n---~~Nv~~Iv~eLl~yl~-------~~d~~~~~~lv~~I~~l 411 (1006)
|..+++.+|+ ++.+..|.+.++-+..++. ++-+.....|+++-+. ..|+-.++.++..++++
T Consensus 513 Y~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warm 592 (1075)
T KOG2171|consen 513 YFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARM 592 (1075)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHH
Confidence 5555554443 3556688888888777654 4445556666665443 34677899999999999
Q ss_pred HhhcCCChhhHHHHHHHHHHhc
Q 001845 412 AEKFAPDLSWYVDVILQLIDKA 433 (1006)
Q Consensus 412 aeky~~~~~w~vd~ll~ll~~~ 433 (1006)
|+-+.+++.-|+.+++..+-..
T Consensus 593 c~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 593 CRILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHhchhhHhHHHHHhHHHHHh
Confidence 9999999999999887655543
No 38
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0053 Score=72.94 Aligned_cols=336 Identities=12% Similarity=0.174 Sum_probs=196.4
Q ss_pred hhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCC----------------------------------------C-----
Q 001845 102 HDFLRLAINTVRNDIIGRNETFQCLALTMVGNIG----------------------------------------G----- 136 (1006)
Q Consensus 102 ~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~----------------------------------------~----- 136 (1006)
|+...+..+.|+++|.+.++..+--|++.+-... +
T Consensus 15 p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~ 94 (948)
T KOG1058|consen 15 PDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLL 94 (948)
T ss_pred CcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccH
Confidence 5666777888888888888877776666543210 0
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE 216 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~ 216 (1006)
+||+ -+...+.+=|. |.|.|||=..+-=+.|| +.||++ +.+.+.+.+.|+-++.-|--+|+-++..|-+.
T Consensus 95 ~EMI-Lvcna~RkDLQ--HPNEyiRG~TLRFLckL--kE~ELl--epl~p~IracleHrhsYVRrNAilaifsIyk~--- 164 (948)
T KOG1058|consen 95 HEMI-LVCNAYRKDLQ--HPNEYIRGSTLRFLCKL--KEPELL--EPLMPSIRACLEHRHSYVRRNAILAIFSIYKN--- 164 (948)
T ss_pred HHHH-HHHHHHhhhcc--CchHhhcchhhhhhhhc--CcHHHh--hhhHHHHHHHHhCcchhhhhhhheeehhHHhh---
Confidence 2222 22344445554 67888887643333322 457888 48899999999999999999999888888765
Q ss_pred hhhccCCCC-CCCccccccCCCChhHHHHH-HHHHhcCCCCCChhhH-HHHHHHHHHHHccCCcccccccCCChhHHHHH
Q 001845 217 AYWSCLPKC-DVPQEYTYYGIPSPWLQVKT-MRALQYFPTVEDPNTR-RSLFEVLQRILMGTDVVKNVNKNNASHAVLFE 293 (1006)
Q Consensus 217 ~~~~~v~~l-~~~~ey~~~~~~~pwlqvkl-LrlL~~~~~~~d~~~~-~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~e 293 (1006)
|..++|.. ++-.+| .....+|--.-.. +-++. -|++-. ..+..++. ..++.+. +.-.|+.|
T Consensus 165 -~~~L~pDapeLi~~f-L~~e~DpsCkRNAFi~L~~-----~D~ErAl~Yl~~~id-------qi~~~~~--~LqlViVE 228 (948)
T KOG1058|consen 165 -FEHLIPDAPELIESF-LLTEQDPSCKRNAFLMLFT-----TDPERALNYLLSNID-------QIPSFND--SLQLVIVE 228 (948)
T ss_pred -hhhhcCChHHHHHHH-HHhccCchhHHHHHHHHHh-----cCHHHHHHHHHhhHh-------hccCccH--HHHHHHHH
Confidence 33344432 000000 0001122111111 11111 144321 12222222 2222211 23477888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcc-cCcChhHHHHHHHH
Q 001845 294 ALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSL-KDPDISIRRRALDL 372 (1006)
Q Consensus 294 ai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L-~d~D~sIr~~aL~l 372 (1006)
-|+-.++ .+.....+-+..+-.||++.++-++|=+--+|..|.. .+.+++.--++++.|+ +.+|--+|..-||.
T Consensus 229 ~Irkv~~--~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~---~p~alk~Aa~~~i~l~~kesdnnvklIvldr 303 (948)
T KOG1058|consen 229 LIRKVCL--ANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN---DPTALKAAASTYIDLLVKESDNNVKLIVLDR 303 (948)
T ss_pred HHHHHHh--cCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC---CHHHHHHHHHHHHHHHHhccCcchhhhhHHH
Confidence 8888887 3344567788899999999999999987766666544 3467888778888886 57788899999999
Q ss_pred hhhcc--CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCC-------cchHHHHH
Q 001845 373 LYGMC--DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGD-------FVSDDIWF 443 (1006)
Q Consensus 373 L~~l~--n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~-------~v~~ei~~ 443 (1006)
|+.+- +++=.+.++-..+..+...|.++|+....-+-.|+. ..+.+-.++++-+=+....+ ......+.
T Consensus 304 l~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs--srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLik 381 (948)
T KOG1058|consen 304 LSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS--SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIK 381 (948)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh--hccHHHHHHHHHHHHHhccccccccchHHHHHHHH
Confidence 99886 222233333444455556788898887665555553 34555555555433322211 12223333
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhhcCC
Q 001845 444 RVVQFVTNNEDLQPYAAAKAREYLDKP 470 (1006)
Q Consensus 444 ~i~~ii~~~~~l~~~a~~~l~~~L~~~ 470 (1006)
.+...-.+.|+.-..++..++++|.|.
T Consensus 382 tih~cav~Fp~~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 382 TIHACAVKFPEVAATVVSLLLDFISDS 408 (948)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHhccC
Confidence 333344566776666677777777664
No 39
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.40 E-value=0.014 Score=71.01 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=155.4
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccc
Q 001845 152 ISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEY 231 (1006)
Q Consensus 152 ~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey 231 (1006)
.+|.++.-+|=-|.+.+..+=+..+..-. .++...+.+.++.++..|..||..++-.+...+-..|..++-. +|
T Consensus 827 ~s~~s~~~ikvfa~LslGElgr~~~~s~~-~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~-----qi 900 (1233)
T KOG1824|consen 827 QSPKSSDSIKVFALLSLGELGRRKDLSPQ-NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILE-----QI 900 (1233)
T ss_pred hCCCCchhHHHHHHhhhhhhccCCCCCcc-hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHH-----HH
Confidence 34566777777777777777666665554 4777888899999999999999999998887665555443311 11
Q ss_pred cccCCCChhHHHHHHHHHhcCCCCC--C--hhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHH
Q 001845 232 TYYGIPSPWLQVKTMRALQYFPTVE--D--PNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEM 307 (1006)
Q Consensus 232 ~~~~~~~pwlqvklLrlL~~~~~~~--d--~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l 307 (1006)
...|.-|--+|.-|..+.... | ....+++.++|-+-..+.+. -...|+-||.-.++..+++.
T Consensus 901 ----~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~ee--------gtR~vvAECLGkL~l~epes-- 966 (1233)
T KOG1824|consen 901 ----ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEE--------GTRNVVAECLGKLVLIEPES-- 966 (1233)
T ss_pred ----hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchh--------hhHHHHHHHhhhHHhCChHH--
Confidence 245666666666555443221 2 12233344443333322221 13479999999999888764
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc-H-HHHHHhHHHhhhcccCcChhHHHHHHHHhhhcc--CcccHH
Q 001845 308 MSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDV-H-DIIKRHQAQIITSLKDPDISIRRRALDLLYGMC--DVSNAK 383 (1006)
Q Consensus 308 ~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~-~-~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~--n~~Nv~ 383 (1006)
....|...+.|..+|.|-.++..+.-.+.-.|. . ..++++..+++..++|+|.-+||.||-.+-.-+ -++=++
T Consensus 967 ---LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 967 ---LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred ---HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHH
Confidence 345688888899999999999887665553332 1 357788899999999999999999999998765 234467
Q ss_pred HHHHHHHHHhhhcChHhHHHHHH
Q 001845 384 DIVEELLQYLSTADFAMREELSL 406 (1006)
Q Consensus 384 ~Iv~eLl~yl~~~d~~~~~~lv~ 406 (1006)
.+++||+..+.+ ...+|.++|.
T Consensus 1044 DllpeLLp~Ly~-eTkvrkelIr 1065 (1233)
T KOG1824|consen 1044 DLLPELLPLLYS-ETKVRKELIR 1065 (1233)
T ss_pred HHHHHHHHHHHH-hhhhhHhhhh
Confidence 788888876653 2345666554
No 40
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=97.35 E-value=0.0013 Score=65.08 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=59.0
Q ss_pred ccccccCCcCcccccccccCCcccccCCcCCCCchHHHHHhhhccCceeeecCCCeEEEEEEeEecceeEEEEEEeecCC
Q 001845 697 EQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNT 776 (1006)
Q Consensus 697 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ll~~~~GvlYe~~~lqI~~k~~~~~~~~~i~l~~~Nks~ 776 (1006)
|++..+|+..+|+. | ..|++ . |.+|..-++||.|..| +.++|.+.|+..
T Consensus 13 pe~~~lG~l~kSs~------~-----v~LTE---~----------------EtEY~V~~vKHiF~~h-iVlQF~v~NTL~ 61 (151)
T PF08752_consen 13 PEFANLGPLFKSSK------P-----VELTE---S----------------ETEYVVSCVKHIFAEH-IVLQFNVTNTLN 61 (151)
T ss_dssp GGGTTS-S--EE-S------------EE-S----T----------------TSSEEEEEEEEE-SSE-EEEEEEEEE--T
T ss_pred hhHhhcCcccccCC------C-----EeccC---c----------------ccEEEEEEEEEEeccc-EEEEEEEeeccC
Confidence 56778888887653 2 45776 2 2699999999999766 999999999998
Q ss_pred CC-cceeEEEEeCCCc-eeEEeecCC-cccCCCCeeEEEEEEEe
Q 001845 777 SP-LFSVQALILPPSH-LKMELSLVP-ETIPPRAQVQCPLEVMN 817 (1006)
Q Consensus 777 ~~-lt~f~~~~~~p~~-l~~~~~~~~-~tI~p~~q~q~~v~v~~ 817 (1006)
.+ |+|+++++..... ++.. ..+| +.|++|+....++.+..
T Consensus 62 dq~LenV~V~~~~~~~~~~~~-~~ipi~~L~~~~~~~~yV~l~~ 104 (151)
T PF08752_consen 62 DQVLENVSVVLEPSEEEFEEV-FIIPIPSLPYNEPGSCYVVLKR 104 (151)
T ss_dssp TEEEEEEEEEEEESSS--EEE-EEE-EEEE-CT--EEEEEEEE-
T ss_pred ceeeeeEEEEEecCCceEEEE-EEEEhhhCCCCCCeeEEEEEEe
Confidence 88 9999999987664 6654 5567 89999998888888887
No 41
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.35 E-value=0.02 Score=70.54 Aligned_cols=339 Identities=14% Similarity=0.191 Sum_probs=195.2
Q ss_pred HHHHhhhcCCCHH-----h-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh---CCCccccCcHHHHHHhhhcCCC
Q 001845 126 LALTMVGNIGGRE-----F-AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRK---NPDVVNVDGWADRMAQLLDERD 196 (1006)
Q Consensus 126 lAL~~l~~i~~~e-----~-~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~---~p~~v~~~~~~~~l~~lL~d~d 196 (1006)
-|++.|.|+.... | -..+.+.+.++|.+ .+.-+.=- ++++++-+.. +-+.+...+.++.+.+++..++
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr--~n~ellil-~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR--ENEELLIL-AVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC--CCHHHHHH-HHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 5677788776522 1 25667777788863 35444333 3344443333 3344444688999999999889
Q ss_pred hhHHHHHHHHHHHHHhcC--hhhh--hccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHH--HHHHHH
Q 001845 197 LGVLTSSMSLLVALVSNN--HEAY--WSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSL--FEVLQR 270 (1006)
Q Consensus 197 ~~V~~~a~~ll~~I~~~~--~~~~--~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l--~~~l~~ 270 (1006)
..++-.++.+|+.+.-+. .... ..++|++ .+ .. .+|=.+...+++|..++.. .+.+..+ -+++..
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkL---v~--LL--~d~~~~~val~iLy~LS~d--d~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKL---VE--LL--KDPNFREVALKILYNLSMD--DEARSMFAYTDCIPQ 415 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHH---HH--Hh--CCCchHHHHHHHHHHhccC--HhhHHHHhhcchHHH
Confidence 999999999999988544 2222 2355555 00 01 1222333477888777763 2222222 133333
Q ss_pred HHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHhh----cCCCCchhHHHHHHHHHHHccCC-c
Q 001845 271 ILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCI--ALLGKFI----AVREPNIRYLGLENMTRMLMVTD-V 343 (1006)
Q Consensus 271 il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~--~~L~~fL----~s~~~nirylaL~~L~~l~~~~~-~ 343 (1006)
++.-. . .+....+-.|++.+++.+..+....+..+ +.|..|+ ..+| -+.+..+..++++++ .
T Consensus 416 L~~~L------l-~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 416 LMQML------L-ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPL 484 (708)
T ss_pred HHHHH------H-hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchH
Confidence 32100 0 00122445577777777766543322222 1233332 3343 445667777777763 2
Q ss_pred HHHHHHhHHHhhhccc-CcChhHHHHHHHHhhhccC-cccHHHHHHH--HHHHhhh------cChHhHHHHHHHHHHHHh
Q 001845 344 HDIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCD-VSNAKDIVEE--LLQYLST------ADFAMREELSLKAAILAE 413 (1006)
Q Consensus 344 ~~~v~~~~~~i~~~L~-d~D~sIr~~aL~lL~~l~n-~~Nv~~Iv~e--Ll~yl~~------~d~~~~~~lv~~I~~lae 413 (1006)
...+..+...+..++. .++....-..|-+|..|.- .-++..++++ |+.|+.+ +++++.-|+|.-+|.+|.
T Consensus 485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 3456678888877776 3566788888888888874 3488999975 6677653 466788888888887762
Q ss_pred hcCCChh-----hHHHHHHHHHHhcCC--cchHHHHHHHHHHHhcCCCcHHH------HHHHHHHhhcCCchh-hHHHHH
Q 001845 414 KFAPDLS-----WYVDVILQLIDKAGD--FVSDDIWFRVVQFVTNNEDLQPY------AAAKAREYLDKPAIH-ETMVKV 479 (1006)
Q Consensus 414 ky~~~~~-----w~vd~ll~ll~~~g~--~v~~ei~~~i~~ii~~~~~l~~~------a~~~l~~~L~~~~~~-e~l~k~ 479 (1006)
.+.-.. -.++.++.+|....+ .+.-++++.+-+++.. ++.++. +...+++.+.|.+.. ..+.-.
T Consensus 565 -d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 565 -DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDN 642 (708)
T ss_pred -CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHH
Confidence 112222 358889999988763 2344455666666655 455554 344666666665322 122223
Q ss_pred HHhhhccccc
Q 001845 480 SAYLLGEYSH 489 (1006)
Q Consensus 480 ~~wilGEyg~ 489 (1006)
+.-|++||-.
T Consensus 643 ~Ldii~e~d~ 652 (708)
T PF05804_consen 643 ALDIIAEYDE 652 (708)
T ss_pred HHHHHHHhCH
Confidence 5677777754
No 42
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.043 Score=64.78 Aligned_cols=337 Identities=15% Similarity=0.077 Sum_probs=193.4
Q ss_pred ccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHh-----HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 001845 99 NENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREF-----AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYR 173 (1006)
Q Consensus 99 ~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~-----~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~ 173 (1006)
.+++.-..+.++.=++-.+.....++-.++.+...++..+- .+.+...+..+.. +..+-||+.|+-+++.+..
T Consensus 150 ~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~--~~D~~Vrt~A~eglL~L~e 227 (823)
T KOG2259|consen 150 CEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEH--DQDFRVRTHAVEGLLALSE 227 (823)
T ss_pred CchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhc--CCCcchHHHHHHHHHhhcc
Confidence 35566666777766666666666778888888888776322 3555555555554 6788899999999998876
Q ss_pred hCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh--------------hhhccCCCCCCCccccccCCCCh
Q 001845 174 KNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE--------------AYWSCLPKCDVPQEYTYYGIPSP 239 (1006)
Q Consensus 174 ~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~--------------~~~~~v~~l~~~~ey~~~~~~~p 239 (1006)
-. .+. .....+..++|+|.+..|-.+|+.|+.-..+..|. .|.+++..+ .+=
T Consensus 228 g~--kL~-~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v-----------~D~ 293 (823)
T KOG2259|consen 228 GF--KLS-KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAV-----------RDR 293 (823)
T ss_pred cc--ccc-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHH-----------hcC
Confidence 22 222 24567888999999999999999998876655531 122221111 000
Q ss_pred hHHH--HHHHHHhcCCCCCChhhHHHHHHHHHHHHccC----CcccccccCCChhHHHHHHHHHHH--hcCC---cHH--
Q 001845 240 WLQV--KTMRALQYFPTVEDPNTRRSLFEVLQRILMGT----DVVKNVNKNNASHAVLFEALALVM--HLDA---EKE-- 306 (1006)
Q Consensus 240 wlqv--klLrlL~~~~~~~d~~~~~~l~~~l~~il~~~----~~~~~~~~~n~~~aVl~eai~~i~--~l~~---~~~-- 306 (1006)
=++| ..-+.|. .. ...++ +++.+.|... ...+.-.|+-. .-+++--..-. .|.. +.+
T Consensus 294 sl~VRV~AaK~lG---~~--~~vSe---e~i~QTLdKKlms~lRRkr~ahkrp--k~l~s~GewSsGk~~~advpsee~d 363 (823)
T KOG2259|consen 294 SLSVRVEAAKALG---EF--EQVSE---EIIQQTLDKKLMSRLRRKRTAHKRP--KALYSSGEWSSGKEWNADVPSEEDD 363 (823)
T ss_pred ceeeeehHHHHhc---hH--HHhHH---HHHHHHHHHHHhhhhhhhhhcccch--HHHHhcCCcccCccccccCchhhcc
Confidence 0000 1111111 10 11222 3344444210 00011111111 11111000000 0100 001
Q ss_pred ------HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcc
Q 001845 307 ------MMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVS 380 (1006)
Q Consensus 307 ------l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~ 380 (1006)
.-..|+..+..=|...=.++|-.+..++..|+...|. +-.+...-+...++|+..-+|.+|+.-|..+.+.-
T Consensus 364 ~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~--FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 364 EEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG--FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL 441 (823)
T ss_pred ccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 0112222222222223357999999999999998764 33346667788899999999999999999887664
Q ss_pred cH-HHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCC--hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHH
Q 001845 381 NA-KDIVEELLQYLSTADFAMREELSLKAAILAEKFAPD--LSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQP 457 (1006)
Q Consensus 381 Nv-~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~--~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~ 457 (1006)
-+ ++.++.+++-+.+...++|+.+-.-++ . -+|++. ..-+++-+++.|..-. .-.++||..+.+|-.|++.+-.
T Consensus 442 ~i~eeql~~il~~L~D~s~dvRe~l~elL~-~-~~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~lv~ 518 (823)
T KOG2259|consen 442 AIREEQLRQILESLEDRSVDVREALRELLK-N-ARVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRLVL 518 (823)
T ss_pred eecHHHHHHHHHHHHhcCHHHHHHHHHHHH-h-cCCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhhHH
Confidence 44 567888888888888889887643332 2 255432 2344555554443321 2477899999999999988766
Q ss_pred HHHHHHHHh
Q 001845 458 YAAAKAREY 466 (1006)
Q Consensus 458 ~a~~~l~~~ 466 (1006)
..+.++++.
T Consensus 519 s~m~rfl~k 527 (823)
T KOG2259|consen 519 SNMGRFLEK 527 (823)
T ss_pred HHHHHHHHh
Confidence 566665543
No 43
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.06 Score=65.01 Aligned_cols=380 Identities=14% Similarity=0.164 Sum_probs=210.1
Q ss_pred HHHHHHHHHHhCCCCC--chHHHHHHhc----cCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHH
Q 001845 54 YVWKMLYIYMLGYDVD--FGHMEAVSLI----SAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLA 127 (1006)
Q Consensus 54 ~v~KLiyi~~lG~dv~--f~~~~vi~L~----~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lA 127 (1006)
-++||.|+|+.-|--. ++...+++.+ .+++...+-++-=.+..+ .-+.+.--.++-+++=++|.++++|--|
T Consensus 64 elKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--~v~~i~ey~~~Pl~~~l~d~~~yvRkta 141 (734)
T KOG1061|consen 64 ELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--RVDKITEYLCDPLLKCLKDDDPYVRKTA 141 (734)
T ss_pred hHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--eehHHHHHHHHHHHHhccCCChhHHHHH
Confidence 3678999999877643 3444444433 333333443332222222 2355667788999999999999999888
Q ss_pred HHhhhcCCC--HHhH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccc---cCcHHHHHHhhhcCCChhHH
Q 001845 128 LTMVGNIGG--REFA--ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN---VDGWADRMAQLLDERDLGVL 200 (1006)
Q Consensus 128 L~~l~~i~~--~e~~--~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~---~~~~~~~l~~lL~d~d~~V~ 200 (1006)
--+++++.. +++. ..+.+.++.++. |++|.|=-.|+-++.-+...+|+.-. +...+..+...|.+-+..=.
T Consensus 142 a~~vakl~~~~~~~~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q 219 (734)
T KOG1061|consen 142 AVCVAKLFDIDPDLVEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ 219 (734)
T ss_pred HHHHHHhhcCChhhccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH
Confidence 878877665 5554 567788888886 78999999999999999999986211 12344555555555444444
Q ss_pred HHHHHHHHHHHhcCh-h---hhhccCCCCCCCccccccCCCChhHH---HHHHHHHhcCCCCCChhhHHHHHHHHHHHHc
Q 001845 201 TSSMSLLVALVSNNH-E---AYWSCLPKCDVPQEYTYYGIPSPWLQ---VKTMRALQYFPTVEDPNTRRSLFEVLQRILM 273 (1006)
Q Consensus 201 ~~a~~ll~~I~~~~~-~---~~~~~v~~l~~~~ey~~~~~~~pwlq---vklLrlL~~~~~~~d~~~~~~l~~~l~~il~ 273 (1006)
...+..+.+-.++++ + .+..+.|.+. ..++-.+ +|++.-+..|...-.....+++..-+-.++
T Consensus 220 i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lq---------h~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tll- 289 (734)
T KOG1061|consen 220 IFILDCLAEYVPKDSREAEDICERLTPRLQ---------HANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLL- 289 (734)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhhhhc---------cCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeee-
Confidence 444444433333333 1 2344555441 0122222 233332222221100011111111111111
Q ss_pred cCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh-cCCCC-chhHHHHHHHHHHHccCCcHHHHHHhH
Q 001845 274 GTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFI-AVREP-NIRYLGLENMTRMLMVTDVHDIIKRHQ 351 (1006)
Q Consensus 274 ~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL-~s~~~-nirylaL~~L~~l~~~~~~~~~v~~~~ 351 (1006)
+..+ ...-|.+-=++++++-.++ +.. .-+..|. .-+|| -++-.-|+++.+++... -+++-.
T Consensus 290 --s~~~------e~qyvaLrNi~lil~~~p~--~~~---~~~~~Ff~kynDPiYvK~eKleil~~la~~~----nl~qvl 352 (734)
T KOG1061|consen 290 --SSES------EIQYVALRNINLILQKRPE--ILK---VEIKVFFCKYNDPIYVKLEKLEILIELANDA----NLAQVL 352 (734)
T ss_pred --cccc------hhhHHHHhhHHHHHHhChH--HHH---hHhHeeeeecCCchhhHHHHHHHHHHHhhHh----HHHHHH
Confidence 1111 1112222333444432222 211 2233343 33443 57777888888888743 233333
Q ss_pred HHhhhcccCcChhHHHHHHHHhhhcc-CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 001845 352 AQIITSLKDPDISIRRRALDLLYGMC-DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLI 430 (1006)
Q Consensus 352 ~~i~~~L~d~D~sIr~~aL~lL~~l~-n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll 430 (1006)
..+...-.+-|...-|+++.-+..++ --.-+...|..|++.++..-..+..|.+.-|..+-.|||..++-.+.++
T Consensus 353 ~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l---- 428 (734)
T KOG1061|consen 353 AELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAIL---- 428 (734)
T ss_pred HHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhh----
Confidence 33333334778888999999998775 1122278999999999976556777788889999999987654444333
Q ss_pred HhcCCc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 001845 431 DKAGDF-VSDDIWFRVVQFVTNNEDLQPYAAAKAREYLD 468 (1006)
Q Consensus 431 ~~~g~~-v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~ 468 (1006)
...-+. -..++-..++.|+..+.+.-+-+...|-.+++
T Consensus 429 ~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~e 467 (734)
T KOG1061|consen 429 CENLDSLQEPEAKAALIWILGEYAERIENALELLESFLE 467 (734)
T ss_pred cccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHh
Confidence 332222 24556667777777766544444444444443
No 44
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.25 E-value=0.0029 Score=65.26 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccH---HHHHHHHHHHhhhcChH
Q 001845 323 EPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNA---KDIVEELLQYLSTADFA 399 (1006)
Q Consensus 323 ~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv---~~Iv~eLl~yl~~~d~~ 399 (1006)
++.+|--++.+|..|+.+.| +.+.+|...++.||+|+|+.+|+.|+-+|..|..++-+ ..++.+++..+.+.|.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 46788888999999999876 57899999999999999999999999999999877544 34447777778888999
Q ss_pred hHHHHHHHHHHHHhhc-CC-ChhhHHHHHHHH
Q 001845 400 MREELSLKAAILAEKF-AP-DLSWYVDVILQL 429 (1006)
Q Consensus 400 ~~~~lv~~I~~laeky-~~-~~~w~vd~ll~l 429 (1006)
+|..+..-+..+..+. +. -+.-+++.+..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9998888888888773 32 233444444443
No 45
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.25 E-value=0.83 Score=54.96 Aligned_cols=495 Identities=15% Similarity=0.151 Sum_probs=263.9
Q ss_pred CCcHHHHHHHhhCC-CChHHHHHH-HHHH-HHHHHHHhhcCCCCCHHHHHHHHHHHHHHH--HhCCCCCchHHHHH----
Q 001845 6 MRGLSVFISDIRNC-PNKEQERLR-VDKE-LGNIRTRFKNEKGLSPYEKKKYVWKMLYIY--MLGYDVDFGHMEAV---- 76 (1006)
Q Consensus 6 mrgL~~fI~~ir~~-~~~~~e~~~-I~~E-l~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~--~lG~dv~f~~~~vi---- 76 (1006)
-+||..|.+.+.-- .--.+|-+- -.+| +-.++++|.++ ..+.||.|.|++--. .-|.+-.|..++++
T Consensus 608 gk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sP----DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff 683 (1172)
T KOG0213|consen 608 GKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSP----DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFF 683 (1172)
T ss_pred ChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHH
Confidence 45678888777543 222333333 3333 45667789988 356888888877544 36766555555444
Q ss_pred -----HhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHH----HhhhcCCCHHh----HHHH
Q 001845 77 -----SLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLAL----TMVGNIGGREF----AESL 143 (1006)
Q Consensus 77 -----~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL----~~l~~i~~~e~----~~~l 143 (1006)
.-++...-..|+++|++.++..+--.+- .++-+..|+.|.+|.+|-++. +.+++++..++ -+.+
T Consensus 684 ~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~---~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~l 760 (1172)
T KOG0213|consen 684 FSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP---IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERL 760 (1172)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHhCchH---HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence 2456667788999999988876654432 577788899999997666554 55566666555 4555
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc--CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhcc
Q 001845 144 APDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV--DGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSC 221 (1006)
Q Consensus 144 ~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~--~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~ 221 (1006)
+..|.-.+...+...-|- +.++..+....-.-+++ ......+...|+.+.+-|-..|.-++-.|+.- .+.|
T Consensus 761 idgil~Afqeqtt~d~vm---l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~V----lktc 833 (1172)
T KOG0213|consen 761 IDGILYAFQEQTTEDSVM---LLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKV----LKTC 833 (1172)
T ss_pred HHHHHHHHHhcccchhhh---hhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH----HHhc
Confidence 566655555323332221 12222222111111110 24556677788888888888888777766631 1111
Q ss_pred CCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhc
Q 001845 222 LPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHL 301 (1006)
Q Consensus 222 v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l 301 (1006)
- | +=+.-++=-+|--|.-.++|++...+...+..|.+..+..| +
T Consensus 834 ~-------e--------e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k---------------------m 877 (1172)
T KOG0213|consen 834 G-------E--------EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK---------------------M 877 (1172)
T ss_pred c-------H--------HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc---------------------c
Confidence 0 0 00000000111112222355554443333333321111000 1
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHh---HHHhhhcccCcChhHHHHHHHHhhhccC
Q 001845 302 DAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRH---QAQIITSLKDPDISIRRRALDLLYGMCD 378 (1006)
Q Consensus 302 ~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~---~~~i~~~L~d~D~sIr~~aL~lL~~l~n 378 (1006)
.+. ++..+..|.-.|.++..-+.--+++.+..|+.+.+..-..++. --.++.+|+....+|||-|.+.+--++-
T Consensus 878 ~pP---i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPP---IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCC---hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 111 1112222223333444444444555555555544320001111 1123567778889999999999887776
Q ss_pred cccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHh---cCCcchHHHHHHHHHHHhcCCCc
Q 001845 379 VSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDK---AGDFVSDDIWFRVVQFVTNNEDL 455 (1006)
Q Consensus 379 ~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~---~g~~v~~ei~~~i~~ii~~~~~l 455 (1006)
.=-=..|+..|++-|+.-+-.-|.....+|++.+|.-.+- .++=.|++. ..-.|.+-|...+.-+....-+.
T Consensus 955 aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 955 AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHH
Confidence 6667889999999999888888888888999998865431 222233322 11224444444444433222111
Q ss_pred ---HHHHHH-HHHHhhcC-Cchh-hHHHHHH-HhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHH
Q 001845 456 ---QPYAAA-KAREYLDK-PAIH-ETMVKVS-AYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKI 528 (1006)
Q Consensus 456 ---~~~a~~-~l~~~L~~-~~~~-e~l~k~~-~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl 528 (1006)
.-|++. .|-+.|-| +..| +.-.-++ --.||-||....+. ...+++++-.+....++.+....+.++--+
T Consensus 1030 skdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda----~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1030 SKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDA----LIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred hhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHH----HHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence 113333 23334432 2233 2222222 33478777655441 345567777788889999988888877663
Q ss_pred HhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc
Q 001845 529 LMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 529 ~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
-.-+. | ..+.+-...-+.+..--||+| ||.+++.
T Consensus 1106 r~~Lg---~---~~~~~Y~~QGLFHParkVR~~---yw~vyn~ 1139 (1172)
T KOG0213|consen 1106 RVALG---P---QAMLKYCLQGLFHPARKVRKR---YWTVYNS 1139 (1172)
T ss_pred HHHhc---h---HHHHHHHHHhccCcHHHHHHH---HHHHHHh
Confidence 22211 1 123333333456677788888 5665553
No 46
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=97.23 E-value=0.0032 Score=58.19 Aligned_cols=101 Identities=24% Similarity=0.291 Sum_probs=70.5
Q ss_pred cccCChhhHHHHhhhcCCCCcceeEeecCCCCCCHHH-HHHHHhccceEEecCCCCCCCcEEEEEEEeecCCCceeEEEE
Q 001845 854 PITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLE-MANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTR 932 (1006)
Q Consensus 854 p~~~~~~~F~~rW~~i~~~~~E~~~~~~~~~~~~~~~-~~~~l~~~g~~v~~~~d~~~~n~~~aGi~~~~~~g~~~~Lvr 932 (1006)
|..++.++|-++|.+.++ |....++.......+. ...+.+++|+.+++-+. +-..+||.... +.-.||+-
T Consensus 2 Pl~isTeeFG~~W~s~~~---e~k~~l~~~~~~t~~~~l~~l~~~l~lh~VevIg---~E~I~A~~ll~---~~~~~L~H 72 (104)
T PF14807_consen 2 PLQISTEEFGQLWLSFSN---ERKQNLPSSSQRTLPEFLQRLQQKLRLHVVEVIG---NEGIFACQLLN---SSPVCLLH 72 (104)
T ss_pred CccccHHHHHHHHHcCCC---eEEEeccccCcCCHHHHHHHHHHhcCceEEEEeC---ccceeeeeccC---CCCeEEEE
Confidence 667889999999999874 3333343222233444 45556799999988663 45555555541 22239999
Q ss_pred EeeCcccCceEEEEEEeCCCchHHHHHHHHHHHh
Q 001845 933 IETDPADRTQLRMTVASGDPTLTFELKEFIKEQL 966 (1006)
Q Consensus 933 ie~~~~~~~~~ritvRs~~~~ls~~i~~~i~~~l 966 (1006)
...+. + .+.+++||+++.+++.|...++.++
T Consensus 73 ~~~~~--~-~l~l~vrs~~~~l~d~ll~~~~~~~ 103 (104)
T PF14807_consen 73 CRVNA--G-TLDLWVRSSDSPLTDCLLYQCQKIL 103 (104)
T ss_pred EEecC--C-eEEEEEEcCCCCcHHHHHHHHHHHh
Confidence 88864 4 8999999999999999998887665
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.14 E-value=0.58 Score=56.18 Aligned_cols=210 Identities=13% Similarity=0.194 Sum_probs=127.0
Q ss_pred HhHHHhhhcccCcChhHHHHHHHHhhhc------cCcccHH-HHHHHHHHHhhhcChHhHHHHHHHHHHHHh------hc
Q 001845 349 RHQAQIITSLKDPDISIRRRALDLLYGM------CDVSNAK-DIVEELLQYLSTADFAMREELSLKAAILAE------KF 415 (1006)
Q Consensus 349 ~~~~~i~~~L~d~D~sIr~~aL~lL~~l------~n~~Nv~-~Iv~eLl~yl~~~d~~~~~~lv~~I~~lae------ky 415 (1006)
.-..+|+..|+++..-+|.+|+|++..+ |.|+-.- ..=.-|.+|+.+.+++.--.++.+|..++. .+
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 3456788899999999999999987654 3333111 111124456666677776666666665542 23
Q ss_pred CCC------------------hhhHHHHHHHHHHhcCCcchHHHHHHHHH----HH-hcCCCcHHHHH------------
Q 001845 416 APD------------------LSWYVDVILQLIDKAGDFVSDDIWFRVVQ----FV-TNNEDLQPYAA------------ 460 (1006)
Q Consensus 416 ~~~------------------~~w~vd~ll~ll~~~g~~v~~ei~~~i~~----ii-~~~~~l~~~a~------------ 460 (1006)
+|. -+-+||.+-.+-..+..|++.--|-||+- ++ ..+.+++.-++
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence 322 13466666665555667788777877753 22 12233333222
Q ss_pred ----HHHHHhhcCCchh-hHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCC
Q 001845 461 ----AKAREYLDKPAIH-ETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPA 535 (1006)
Q Consensus 461 ----~~l~~~L~~~~~~-e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~ 535 (1006)
..|++-|+-.+-+ ..-.-+++-|+|||.. |-.++-.|.+-|..-...||.-+|-++.-+|-+.
T Consensus 959 qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~---------pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyi--- 1026 (1172)
T KOG0213|consen 959 QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG---------PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYI--- 1026 (1172)
T ss_pred HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC---------chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHH---
Confidence 2222222211101 1112246888999865 4456677888888888889999999999877653
Q ss_pred ChhHH-H---HHHHHHHHhccCCChHHHHHHHHHHHHhcc
Q 001845 536 DPELQ-N---QIWAIFNKYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 536 ~~e~~-~---~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
.++. + .+.-+++....|.|+-=||-|.-..+=+..
T Consensus 1027 -gemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1027 -GEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred -HHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 2322 2 355567778889999989988776554443
No 48
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.11 E-value=0.07 Score=65.83 Aligned_cols=351 Identities=19% Similarity=0.254 Sum_probs=188.8
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHHhcChh--------hhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCC
Q 001845 186 DRMAQLLDERDLGVLTSSMSLLVALVSNNHE--------AYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVED 257 (1006)
Q Consensus 186 ~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~--------~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d 257 (1006)
.++..++..++ .++..++.+|..++.+..- .+..++..+ .-.++=+.+..+.+|+++....
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~L---------dr~n~ellil~v~fLkkLSi~~- 321 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCL---------DRENEELLILAVTFLKKLSIFK- 321 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHH---------cCCCHHHHHHHHHHHHHHcCCH-
Confidence 45555555444 4677888999999876532 112222222 1224557787888888876542
Q ss_pred hhhHHHH-----HHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhhcCCCCchh
Q 001845 258 PNTRRSL-----FEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQC-----IALLGKFIAVREPNIR 327 (1006)
Q Consensus 258 ~~~~~~l-----~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~-----~~~L~~fL~s~~~nir 327 (1006)
+....| ..-|.+++. +.|. -++-.+++++.++..+.+.+... +..|..||. +++.+
T Consensus 322 -ENK~~m~~~giV~kL~kLl~---------s~~~--~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~--d~~~~ 387 (708)
T PF05804_consen 322 -ENKDEMAESGIVEKLLKLLP---------SENE--DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK--DPNFR 387 (708)
T ss_pred -HHHHHHHHcCCHHHHHHHhc---------CCCH--HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC--CCchH
Confidence 122222 223333442 2232 56778999999998876655544 467777874 57899
Q ss_pred HHHHHHHHHHHccCCcHHHHH--HhHHHhhhcc-cCcChhHHHHHHHHhhhcc-CcccHHHHHHH-HHHHhhhcChHhHH
Q 001845 328 YLGLENMTRMLMVTDVHDIIK--RHQAQIITSL-KDPDISIRRRALDLLYGMC-DVSNAKDIVEE-LLQYLSTADFAMRE 402 (1006)
Q Consensus 328 ylaL~~L~~l~~~~~~~~~v~--~~~~~i~~~L-~d~D~sIr~~aL~lL~~l~-n~~Nv~~Iv~e-Ll~yl~~~d~~~~~ 402 (1006)
.+++..|+.|+..+.....+. .....++.++ ..++.-+....+-+++.++ ++.|++.+++. -+..+-..-...+.
T Consensus 388 ~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D 467 (708)
T PF05804_consen 388 EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD 467 (708)
T ss_pred HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc
Confidence 999999999988543222222 3344445543 3455556666777777665 88888887762 12222111122333
Q ss_pred HHHHHHHHHHhhcC-CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcC--CCc------HH-HHHHHHHHhhcCCch
Q 001845 403 ELSLKAAILAEKFA-PDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNN--EDL------QP-YAAAKAREYLDKPAI 472 (1006)
Q Consensus 403 ~lv~~I~~laeky~-~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~--~~l------~~-~a~~~l~~~L~~~~~ 472 (1006)
.++.|+.+-.-.+. +...-+++++.+|+..-...-+++...-.+-++.|- +++ ++ ..+.-+.+.|.....
T Consensus 468 ~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 468 PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 44444333222333 333445555554444322212445444444444442 222 12 134445555554433
Q ss_pred hh-HHHHHHHhhhcccc------ccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 001845 473 HE-TMVKVSAYLLGEYS------HLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWA 545 (1006)
Q Consensus 473 ~e-~l~k~~~wilGEyg------~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~ 545 (1006)
.+ .++. ++-++|--+ .++.+. ++ ...++.+|.. ..++.+.-.+++-++.++..| ++.++.+.+
T Consensus 548 ~dDl~LE-~Vi~~gtla~d~~~A~lL~~s-gl-i~~Li~LL~~--kqeDdE~VlQil~~f~~ll~h-----~~tr~~ll~ 617 (708)
T PF05804_consen 548 EDDLLLE-VVILLGTLASDPECAPLLAKS-GL-IPTLIELLNA--KQEDDEIVLQILYVFYQLLFH-----EETREVLLK 617 (708)
T ss_pred ChHHHHH-HHHHHHHHHCCHHHHHHHHhC-Ch-HHHHHHHHHh--hCchHHHHHHHHHHHHHHHcC-----hHHHHHHHh
Confidence 33 3333 334455332 222211 11 1222333322 356889999999999997655 455544332
Q ss_pred ------HHHHhccCCChHHHHHHHHHHHHhcc
Q 001845 546 ------IFNKYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 546 ------vl~~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
.+=...+|.|.+||+=|-..+-++..
T Consensus 618 ~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 23334689999999988777766653
No 49
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.09 E-value=0.3 Score=60.10 Aligned_cols=374 Identities=15% Similarity=0.171 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc--CcHHHHHHhhhcCCCh---hHHHHHHHHHHHHHhcCh
Q 001845 141 ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV--DGWADRMAQLLDERDL---GVLTSSMSLLVALVSNNH 215 (1006)
Q Consensus 141 ~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~--~~~~~~l~~lL~d~d~---~V~~~a~~ll~~I~~~~~ 215 (1006)
..+...+.+.+++ .+---|..+..-+.-+....|+.... +..++-|...|.|++. +-+.+-.-+...++.+.|
T Consensus 434 ~~iVkai~~qlr~--ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p 511 (1233)
T KOG1824|consen 434 PLIVKAIQKQLRE--KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPP 511 (1233)
T ss_pred HHHHHHHHHHHhh--ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCCh
Confidence 4566666666663 33337788888888899999987732 3567888888888543 344555555556677889
Q ss_pred hhhhccCCCCCCCc----cccccCCCChhHHH--HHHHHHhcCCCC---CChhhHHHHHHHHHHHHccCCcccccccCCC
Q 001845 216 EAYWSCLPKCDVPQ----EYTYYGIPSPWLQV--KTMRALQYFPTV---EDPNTRRSLFEVLQRILMGTDVVKNVNKNNA 286 (1006)
Q Consensus 216 ~~~~~~v~~l~~~~----ey~~~~~~~pwlqv--klLrlL~~~~~~---~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~ 286 (1006)
+.|+..++.+..+. .-.||++.++-+.+ +++|.++-..++ +-+...+.|+++.-+.+.++|.-..+
T Consensus 512 ~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeV----- 586 (1233)
T KOG1824|consen 512 EVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEV----- 586 (1233)
T ss_pred hhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHH-----
Confidence 99998887761100 00245555444332 455666555441 11223344555555555444432211
Q ss_pred hhHHHHHHHHHHHh----cCC-cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHH---HHHHhHHHhhhcc
Q 001845 287 SHAVLFEALALVMH----LDA-EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHD---IIKRHQAQIITSL 358 (1006)
Q Consensus 287 ~~aVl~eai~~i~~----l~~-~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~---~v~~~~~~i~~~L 358 (1006)
---||.++-+ +.. -...+..+...|..=| .+--.|..+.++++.++...-..+ ...+-...+...+
T Consensus 587 ----keraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~fl 660 (1233)
T KOG1824|consen 587 ----KERAISCMGQIIANFGDFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFL 660 (1233)
T ss_pred ----HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHH
Confidence 1111222111 110 0001111111111111 222345555555555554321000 0000001111111
Q ss_pred cCcChhHHHHHHHHhhhcc-------CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCC----ChhhHHHHHH
Q 001845 359 KDPDISIRRRALDLLYGMC-------DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAP----DLSWYVDVIL 427 (1006)
Q Consensus 359 ~d~D~sIr~~aL~lL~~l~-------n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~----~~~w~vd~ll 427 (1006)
+-.....|.-.|..+-.+. ...=++.++.||..-+.+.|-.+-+-.+.-+..++..++. ...-.++.++
T Consensus 661 rK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii 740 (1233)
T KOG1824|consen 661 RKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEII 740 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHH
Confidence 1111222222222222111 1222344444444444444444333333333333333321 2233444444
Q ss_pred HHHHhc---C---------------------------------------CcchHHHHHHHH----HHHhcCCCcHHHHHH
Q 001845 428 QLIDKA---G---------------------------------------DFVSDDIWFRVV----QFVTNNEDLQPYAAA 461 (1006)
Q Consensus 428 ~ll~~~---g---------------------------------------~~v~~ei~~~i~----~ii~~~~~l~~~a~~ 461 (1006)
.+++.. | +-+...+.+.+. ++....|+--...+.
T Consensus 741 ~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~ 820 (1233)
T KOG1824|consen 741 RLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLAT 820 (1233)
T ss_pred HHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 444332 1 112222222222 223333433333444
Q ss_pred HHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHh
Q 001845 462 KAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILM 530 (1006)
Q Consensus 462 ~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~ 530 (1006)
++..-+..+......--.+.-.+||-|+.....+ ..++...+.+.|..-+.++|.+.=.|+.-+..
T Consensus 821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred HHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 5555555554444443346778999998876543 46888899999999999999999999988543
No 50
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.66 Score=56.34 Aligned_cols=393 Identities=13% Similarity=0.138 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHH-hccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHH
Q 001845 49 YEKKKYVWKMLYIYMLGYDVDFGHMEAVS-LISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLA 127 (1006)
Q Consensus 49 ~~kkk~v~KLiyi~~lG~dv~f~~~~vi~-L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lA 127 (1006)
.-|-.++.+|+|+.=.| +.|+.-..++ .+.+++....-..-+--..|+..+.++..==.|-++--.++.|.+.+.-|
T Consensus 115 ~yr~~AiR~L~~I~d~~--m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHa 192 (865)
T KOG1078|consen 115 LYRAAAIRALCSIIDGT--MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHA 192 (865)
T ss_pred chhHHHHHHHHhhcCcc--hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHH
Confidence 34888899988876433 3455555554 67777777777777777788888888888889999999999999999999
Q ss_pred HHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHH
Q 001845 128 LTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLL 207 (1006)
Q Consensus 128 L~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll 207 (1006)
|-.+-.|+..+=. .+...|.+.....-.+|+-+=-=+-...++...++... ..+.+.+..+|..++.+|.+=|..++
T Consensus 193 lglLyqirk~drl-a~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~--s~~~~fl~s~l~~K~emV~~EaArai 269 (865)
T KOG1078|consen 193 LGLLYQIRKNDRL-AVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQAD--SPLFPFLESCLRHKSEMVIYEAARAI 269 (865)
T ss_pred HHHHHHHHhhhHH-HHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccch--hhHHHHHHHHHhchhHHHHHHHHHHH
Confidence 9988888552211 12222222222112333322111111223344444433 25678888899999999998888877
Q ss_pred HHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCCh
Q 001845 208 VALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNAS 287 (1006)
Q Consensus 208 ~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~ 287 (1006)
..+...++..+..-+..+ -.+...|.+-++-..+|.|...... -|..-.....-|+.+++ ..|
T Consensus 270 ~~l~~~~~r~l~pavs~L-----q~flssp~~~lRfaAvRtLnkvAm~-~P~~v~~cN~elE~lIt---------d~N-- 332 (865)
T KOG1078|consen 270 VSLPNTNSRELAPAVSVL-----QLFLSSPKVALRFAAVRTLNKVAMK-HPQAVTVCNLDLESLIT---------DSN-- 332 (865)
T ss_pred hhccccCHhhcchHHHHH-----HHHhcCcHHHHHHHHHHHHHHHHHh-CCccccccchhHHhhhc---------ccc--
Confidence 766554443322211111 1122334444444444544433221 11100001111222221 111
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHH-HHHhHHHhhhccc-CcChhH
Q 001845 288 HAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDI-IKRHQAQIITSLK-DPDISI 365 (1006)
Q Consensus 288 ~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~-v~~~~~~i~~~L~-d~D~sI 365 (1006)
-+|--=|+-++++-..+. -+.+.++.+..|.+.=+.+-+.++.+.+..|+...|.... .-.+.. ..|+ +.-..-
T Consensus 333 rsIat~AITtLLKTG~e~-sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~---~~Lr~eGg~e~ 408 (865)
T KOG1078|consen 333 RSIATLAITTLLKTGTES-SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLS---NMLREEGGFEF 408 (865)
T ss_pred cchhHHHHHHHHHhcchh-HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHH---HHHHhccCchH
Confidence 134444556666655443 3566677777788766778888899999999887663211 112222 3333 444456
Q ss_pred HHHHHHHhhhcc--CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhh--cCCChhhHHHHHHHHHHhcCCcchHHH
Q 001845 366 RRRALDLLYGMC--DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEK--FAPDLSWYVDVILQLIDKAGDFVSDDI 441 (1006)
Q Consensus 366 r~~aL~lL~~l~--n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laek--y~~~~~w~vd~ll~ll~~~g~~v~~ei 441 (1006)
|+-..|.+..+. |.+.=+..+..|..|++++. +....++-+..|... .+++..-|+..+.+.+-.....+..+.
T Consensus 409 K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaA 486 (865)
T KOG1078|consen 409 KRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAA 486 (865)
T ss_pred HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHH
Confidence 666777777665 56666788888888888654 333333333333332 246777888888877777666777777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhcC
Q 001845 442 WFRVVQFVTNNEDLQPYAAAKAREYLDK 469 (1006)
Q Consensus 442 ~~~i~~ii~~~~~l~~~a~~~l~~~L~~ 469 (1006)
+..+.++-.+++.++..+...|-..+.|
T Consensus 487 v~alaKfg~~~~~l~~sI~vllkRc~~D 514 (865)
T KOG1078|consen 487 VSALAKFGAQDVVLLPSILVLLKRCLND 514 (865)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHhcC
Confidence 7777777766777766555555555543
No 51
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.80 E-value=0.097 Score=60.81 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=180.7
Q ss_pred hHHHHHHhccCCC----cCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCC----CHHhHHH
Q 001845 71 GHMEAVSLISAPK----YPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIG----GREFAES 142 (1006)
Q Consensus 71 ~~~~vi~L~~S~~----~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~----~~e~~~~ 142 (1006)
.+...++.+.++. ---+-++-=+...++.+|+++..-...-+.-=|.++-+.+.--|-|.++.+. +++..+.
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~ 303 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQ 303 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHH
Confidence 3444455555543 1123344556677788888876665555555567777777766667766644 3555666
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHH-hcChhhhhcc
Q 001845 143 LAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALV-SNNHEAYWSC 221 (1006)
Q Consensus 143 l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~-~~~~~~~~~~ 221 (1006)
....++..|.+ .+...|=.|+-.+-++-.++|+.+. -.-..+..|+.|.|-.+..=|++-|..-- ..+-+...+.
T Consensus 304 ~vs~L~~fL~s--~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~ 379 (898)
T COG5240 304 TVSSLRTFLKS--TRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNL 379 (898)
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHH
Confidence 66667777764 4666777888888889999999985 55678999999988776554444433211 1111222333
Q ss_pred CCCCCCCccccccCCCChhH--HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHH
Q 001845 222 LPKCDVPQEYTYYGIPSPWL--QVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVM 299 (1006)
Q Consensus 222 v~~l~~~~ey~~~~~~~pwl--qvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~ 299 (1006)
++.. .+.+.+.|- .+-.+|-|....+. ....+.++|..+|.... ...-++ -..+|+.-++
T Consensus 380 I~sf-------vhD~SD~FKiI~ida~rsLsl~Fp~----k~~s~l~FL~~~L~~eG---g~eFK~----~~Vdaisd~~ 441 (898)
T COG5240 380 IPSF-------VHDMSDGFKIIAIDALRSLSLLFPS----KKLSYLDFLGSSLLQEG---GLEFKK----YMVDAISDAM 441 (898)
T ss_pred HHHH-------HHhhccCceEEeHHHHHHHHhhCcH----HHHHHHHHHHHHHHhcc---cchHHH----HHHHHHHHHH
Confidence 3332 223333332 34456777655443 22345677777773211 011111 1346666666
Q ss_pred hcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCC---cHHHHHHhHHHhhhcccCcChhHHHHHHHHh---
Q 001845 300 HLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTD---VHDIIKRHQAQIITSLKDPDISIRRRALDLL--- 373 (1006)
Q Consensus 300 ~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~---~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL--- 373 (1006)
...+. ..+++...|+.|+...+.+ -++++.|..|....| .+...-+|. ...+-=.+.-||.-|+.-|
T Consensus 442 ~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhI---yNR~iLEN~ivRsaAv~aLskf 514 (898)
T COG5240 442 ENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHI---YNRLILENNIVRSAAVQALSKF 514 (898)
T ss_pred hhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHH---HHHHHHhhhHHHHHHHHHHHHh
Confidence 65553 4678899999999755433 356676666665433 222233343 2222224456888888888
Q ss_pred -hhccCcccHHHHHHHHHHHhhhcChHhHHHHHH
Q 001845 374 -YGMCDVSNAKDIVEELLQYLSTADFAMREELSL 406 (1006)
Q Consensus 374 -~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~ 406 (1006)
+..-|.-.-+.|..-|...+.+.|+++|..+..
T Consensus 515 ~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 515 ALNISDVVSPQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred ccCccccccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 444455556667777777888888888876644
No 52
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.53 Score=56.03 Aligned_cols=246 Identities=13% Similarity=0.179 Sum_probs=135.9
Q ss_pred HhHHH-hhhcccCcChhHHHHHHHHhhhccCcccH-HHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcC-------CCh
Q 001845 349 RHQAQ-IITSLKDPDISIRRRALDLLYGMCDVSNA-KDIVEELLQYLSTADFAMREELSLKAAILAEKFA-------PDL 419 (1006)
Q Consensus 349 ~~~~~-i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv-~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~-------~~~ 419 (1006)
+|.-. +.+...|.|..+|.-|++=|+.|.+-.-. +.+.+...+++.+.+.++|..+|..+...+.+++ .+.
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 34333 55566677777777777777777653322 3345555566666677777777777777666663 122
Q ss_pred hhHHHHHHHHHHh---------------cCC--cchHHHHHHHHH--HHhcCC---CcHHHHHHHHHHhhc--------C
Q 001845 420 SWYVDVILQLIDK---------------AGD--FVSDDIWFRVVQ--FVTNNE---DLQPYAAAKAREYLD--------K 469 (1006)
Q Consensus 420 ~w~vd~ll~ll~~---------------~g~--~v~~ei~~~i~~--ii~~~~---~l~~~a~~~l~~~L~--------~ 469 (1006)
+-+.+...++-.. -|+ .+++|++++..+ +..+.. -.++ .-+.++.--+ +
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahk-rpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHK-RPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhccc-chHHHHhcCCcccCccccc
Confidence 2333333332211 122 367777766532 332110 0001 0111111110 0
Q ss_pred -------CchhhHHHH---HHHhhhc---cc-----------cccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHH
Q 001845 470 -------PAIHETMVK---VSAYLLG---EY-----------SHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTY 525 (1006)
Q Consensus 470 -------~~~~e~l~k---~~~wilG---Ey-----------g~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~ 525 (1006)
++..++++- +++|+-| || +.+..+.|.. +..-+++|.+-|.++-..||...+.++
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F-A~~aldfLvDMfNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF-AVRALDFLVDMFNDEIEVVRLKAIFAL 434 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000011111 0122222 11 1222222332 567788999999999999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcch------HHHHHhhhcCCCCCccchhHh---hhh
Q 001845 526 AKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKG------AALMDILAEMPKFPERQSSLI---KKA 596 (1006)
Q Consensus 526 ~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~~------~~~~~vl~~mP~~~~~~~~ll---~~l 596 (1006)
.++..|+ .+++.....+-.+..|.++|+|+-.++.+...+.. -..+.++.-+-.||.+.+..+ .|+
T Consensus 435 ~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 435 TMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRI 509 (823)
T ss_pred HHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Confidence 9988773 24444555555667888999999999999999873 234456666677776554543 344
Q ss_pred hhccc
Q 001845 597 EDVEV 601 (1006)
Q Consensus 597 ~~~~~ 601 (1006)
+++++
T Consensus 510 GqnH~ 514 (823)
T KOG2259|consen 510 GQNHR 514 (823)
T ss_pred hccCh
Confidence 55544
No 53
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.76 E-value=0.0092 Score=63.99 Aligned_cols=190 Identities=16% Similarity=0.108 Sum_probs=111.1
Q ss_pred HHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHhC--CCCCchHHHH--------HHhccCCCcCchhhhHHHHHhh
Q 001845 30 DKELGNIRTRF--KNEKGLSPYEKKKYVWKMLYIYMLG--YDVDFGHMEA--------VSLISAPKYPEKQVGYIVTSCL 97 (1006)
Q Consensus 30 ~~El~~Ir~~f--~~~~~l~~~~kkk~v~KLiyi~~lG--~dv~f~~~~v--------i~L~~S~~~~~KrlgYL~l~~l 97 (1006)
++|+++|...| +++ +-+=.+|.+++.+|--+...| .+....+++. ++.+.+.+...=+-+-..++.+
T Consensus 2 ~~~~~~~~~~l~~~~~-~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l 80 (228)
T PF12348_consen 2 EYEFEEILAALEKKES-ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDL 80 (228)
T ss_dssp ----GGS-TTHHHHHT--SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHH
T ss_pred cchHHHHHHHHhccCC-ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46777778788 333 334556788888887777766 2222233333 3355555555445555555444
Q ss_pred ccc----ChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHH-hHHHH-HHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001845 98 LNE----NHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGRE-FAESL-APDVQKLIISSSCRPLVRKKAALCLLRL 171 (1006)
Q Consensus 98 ~~~----~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e-~~~~l-~~~V~~~l~s~~~~~~VRKkA~lal~~l 171 (1006)
+.. -...+..+++.|.+=+.+++..++..|-++|-.+...- +...+ .+.+..++. +.+|-||..++.++..+
T Consensus 81 ~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 81 ARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLK--SKNPQVREECAEWLAII 158 (228)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 433 22345677888989899999999988888777765522 23444 566666665 78999999999999999
Q ss_pred HhhCC---Ccccc----CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccC
Q 001845 172 YRKNP---DVVNV----DGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL 222 (1006)
Q Consensus 172 ~~~~p---~~v~~----~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v 222 (1006)
+...+ ..+.. +.+.+.+.+++.|.|+.|--+|-.++..+.++.|+.-..++
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 99999 44432 24778888899999999999999999998887776543333
No 54
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.74 E-value=0.5 Score=55.64 Aligned_cols=442 Identities=14% Similarity=0.160 Sum_probs=221.5
Q ss_pred HHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc--ccCcHH
Q 001845 108 AINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV--NVDGWA 185 (1006)
Q Consensus 108 viNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v--~~~~~~ 185 (1006)
.+.+++-|+.+.+|++|.-.=|+.+.+.+.-=.+.+.|.+..+..| .++.--|...+-++-++.....-.+ ....+.
T Consensus 282 ~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~S-rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~ 360 (975)
T COG5181 282 SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGS-RKSWEARHTGIRIAQQICELLGRSRLSHLGPLL 360 (975)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC-ccchhhhchhhHHHHHHHHHhCccHHhhhhhHH
Confidence 4567888999999999998888888777665578888888887764 4466667666666666665543211 113678
Q ss_pred HHHHhhhcCCChhHH---HHHHHHHHHHHh--------------------cChhh---hh----ccCCCCCCCccccccC
Q 001845 186 DRMAQLLDERDLGVL---TSSMSLLVALVS--------------------NNHEA---YW----SCLPKCDVPQEYTYYG 235 (1006)
Q Consensus 186 ~~l~~lL~d~d~~V~---~~a~~ll~~I~~--------------------~~~~~---~~----~~v~~l~~~~ey~~~~ 235 (1006)
+.|.++|.|.+.-|- .++++.+.+..- +.... |. .++|.+ .+||..|
T Consensus 361 ~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm--~peYa~h- 437 (975)
T COG5181 361 KCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLM--SPEYACH- 437 (975)
T ss_pred HHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccC--ChHhhhh-
Confidence 889999988776553 344444443321 11111 11 123332 4556433
Q ss_pred CCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccC--Cccccc-------------ccCCCh----h-HHHHHHH
Q 001845 236 IPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGT--DVVKNV-------------NKNNAS----H-AVLFEAL 295 (1006)
Q Consensus 236 ~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~--~~~~~~-------------~~~n~~----~-aVl~eai 295 (1006)
..-..++++.+.....|.+..+.+.-+++ +..++ +++..+ ..+.++ + -|++..+
T Consensus 438 -----~tre~m~iv~ref~spdeemkk~~l~v~~-~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttv 511 (975)
T COG5181 438 -----DTREHMEIVFREFKSPDEEMKKDLLVVER-ICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTV 511 (975)
T ss_pred -----hHHHHHHHHHHHhCCchhhcchhHHHHHH-HHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHH
Confidence 22344444443333224333333322222 22221 111100 000010 1 1222222
Q ss_pred HHHHhcC-------------C--------cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc-----------
Q 001845 296 ALVMHLD-------------A--------EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDV----------- 343 (1006)
Q Consensus 296 ~~i~~l~-------------~--------~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~----------- 343 (1006)
-+.=... . +.++..+.++.|++.=-...-+-||+ +.+..-.+..+.
T Consensus 512 ilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~--d~il~Afqeq~~t~~~il~~f~t 589 (975)
T COG5181 512 ILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY--DSILNAFQEQDTTVGLILPCFST 589 (975)
T ss_pred HHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH--HHHHHHHHhccccccEEEecccc
Confidence 2221111 1 11233344444433211111122221 111111111100
Q ss_pred ---------HHHHHHhHHHhhhcccCcChhHHHHHHHHhhhcc------Ccc-cHHHHHHHHHHHhhhcChHhHHHHHHH
Q 001845 344 ---------HDIIKRHQAQIITSLKDPDISIRRRALDLLYGMC------DVS-NAKDIVEELLQYLSTADFAMREELSLK 407 (1006)
Q Consensus 344 ---------~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~------n~~-Nv~~Iv~eLl~yl~~~d~~~~~~lv~~ 407 (1006)
......-.++|+..|+++.+.+|.+|+|+.-.++ .|. -...+=.-|.+|+.+.+++.--.++.+
T Consensus 590 v~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~A 669 (975)
T COG5181 590 VLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKA 669 (975)
T ss_pred eeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHH
Confidence 0123334578889999999999999999876552 211 011111123445556677777777777
Q ss_pred HHHHHh--hcC---CChhhHHHHHHHHHHh-------------------cCCcchHHHHHHHHH-----HHhcCCCcHHH
Q 001845 408 AAILAE--KFA---PDLSWYVDVILQLIDK-------------------AGDFVSDDIWFRVVQ-----FVTNNEDLQPY 458 (1006)
Q Consensus 408 I~~lae--ky~---~~~~w~vd~ll~ll~~-------------------~g~~v~~ei~~~i~~-----ii~~~~~l~~~ 458 (1006)
|+.+.. .|. |-.+-.+-.+..+|+. +..|++.--|-||+- +..-+.+++.-
T Consensus 670 i~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~ 749 (975)
T COG5181 670 ICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRN 749 (975)
T ss_pred HHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 776542 222 2222333333333333 335666666666642 11223333332
Q ss_pred HH----------------HHHHHhhcCCchh-hHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHH
Q 001845 459 AA----------------AKAREYLDKPAIH-ETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAIL 521 (1006)
Q Consensus 459 a~----------------~~l~~~L~~~~~~-e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~i 521 (1006)
|. ..|++-|+-.+-+ ..-..+++-|+|||.. |-.++-.|...|..-...||.-+
T Consensus 750 A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg---------pfsVlP~lm~dY~TPe~nVQnGv 820 (975)
T COG5181 750 ATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG---------PFSVLPTLMSDYETPEANVQNGV 820 (975)
T ss_pred hhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC---------chhhHHHHHhcccCchhHHHHhH
Confidence 21 2222222211111 1112246788888865 44566677788888888899999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHHHhc
Q 001845 522 LSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSR 570 (1006)
Q Consensus 522 Lta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~ 570 (1006)
|-|++-+|-+..+..-+-.-.+..+++....|.|+-=||-|.-..+=+.
T Consensus 821 Lkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 821 LKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 9999887765322111111235556777788999988888876655443
No 55
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.65 E-value=0.0063 Score=54.48 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=62.9
Q ss_pred HHHHhhc-CCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHH
Q 001845 110 NTVRNDI-IGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRM 188 (1006)
Q Consensus 110 Nsl~KDL-~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l 188 (1006)
..+.+-| +++|+.+|..|+++|+.++.++. .+.+.+++. |.++.||..|+.++.++= .++..+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~--d~~~~vr~~a~~aL~~i~--------~~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLK--DEDPMVRRAAARALGRIG--------DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHT--SSSHHHHHHHHHHHHCCH--------HHHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHc--CCCHHHHHHHHHHHHHhC--------CHHHHHHH
Confidence 4566777 89999999999999999987755 555566665 789999999999999762 13456778
Q ss_pred HhhhcC-CChhHHHHHHHHH
Q 001845 189 AQLLDE-RDLGVLTSSMSLL 207 (1006)
Q Consensus 189 ~~lL~d-~d~~V~~~a~~ll 207 (1006)
.+++.| .+..|-.+|+..|
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhc
Confidence 888864 5666666665543
No 56
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.65 Score=57.33 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhCCCCC--chHHHHHH----hccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhH
Q 001845 53 KYVWKMLYIYMLGYDVD--FGHMEAVS----LISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCL 126 (1006)
Q Consensus 53 k~v~KLiyi~~lG~dv~--f~~~~vi~----L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~l 126 (1006)
.=++||+|+|..-|.=- ....-+++ =+++++-..|-++-=+++.+ ..+++.--+++++++=++|+++++|-.
T Consensus 69 ~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ik~~l~d~~ayVRk~ 146 (757)
T COG5096 69 VELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--RVKELLGNIIDPIKKLLTDPHAYVRKT 146 (757)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 44789999999776522 23333344 45566667777777777766 458899999999999999999999999
Q ss_pred HHHhhhcCC--CHHhHHHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 001845 127 ALTMVGNIG--GREFAESL-APDVQKLIISSSCRPLVRKKAALCLLRLYRK 174 (1006)
Q Consensus 127 AL~~l~~i~--~~e~~~~l-~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~ 174 (1006)
|.=++.++- ++++...+ .-++.+.+.+ |++|.|...|..++.-++..
T Consensus 147 Aalav~kly~ld~~l~~~~g~~~~l~~l~~-D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 147 AALAVAKLYRLDKDLYHELGLIDILKELVA-DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhcCHhhhhcccHHHHHHHHhh-CCCchHHHHHHHHHHHhchh
Confidence 998888875 58888777 6666666664 89999999998887766544
No 57
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.50 E-value=1.8 Score=50.89 Aligned_cols=399 Identities=14% Similarity=0.190 Sum_probs=202.3
Q ss_pred HHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc--c--cCcHHHHHHhhhcCCChh
Q 001845 123 FQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV--N--VDGWADRMAQLLDERDLG 198 (1006)
Q Consensus 123 ~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v--~--~~~~~~~l~~lL~d~d~~ 198 (1006)
-.+.-|...+...+..|.+.+...|.+.+++ .+-.=|-.|++|+-.+..- |+.. . ..+..+-|..++.|+-.-
T Consensus 347 aA~sCLqlfaq~~gd~i~~pVl~FvEqni~~--~~w~nreaavmAfGSvm~g-p~~~~lT~~V~qalp~i~n~m~D~~l~ 423 (858)
T COG5215 347 AASSCLQLFAQLKGDKIMRPVLGFVEQNIRS--ESWANREAAVMAFGSVMHG-PCEDCLTKIVPQALPGIENEMSDSCLW 423 (858)
T ss_pred hHHHHHHHHHHHhhhHhHHHHHHHHHHhccC--chhhhHHHHHHHhhhhhcC-ccHHHHHhhHHhhhHHHHHhcccceee
Confidence 3456678888888889999999999999985 4667788999999887743 3211 0 035667777888888888
Q ss_pred HHHHHHHHHHHHHhcChhhhhccCCCC-------CCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q 001845 199 VLTSSMSLLVALVSNNHEAYWSCLPKC-------DVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRI 271 (1006)
Q Consensus 199 V~~~a~~ll~~I~~~~~~~~~~~v~~l-------~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~i 271 (1006)
|...+.=.+..|+.+-+....+|.... --..|+.+-.+.+.|....+..=+..-.+.-..-..+-...++..+
T Consensus 424 vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 887776678888877665443333211 0012333344567787766665444332211111223334666666
Q ss_pred HccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc--CCCCchhHHHHHHHHHHHccCCcHHHHHH
Q 001845 272 LMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIA--VREPNIRYLGLENMTRMLMVTDVHDIIKR 349 (1006)
Q Consensus 272 l~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~--s~~~nirylaL~~L~~l~~~~~~~~~v~~ 349 (1006)
+..|+.. .+.+| ..+-+|++.-+++.+.+.. ....+..|.+ ++.-.- .+..+..+....+. ..+++
T Consensus 504 v~~t~~~--~Ne~n-~R~s~fsaLgtli~~~~d~-----V~~~~a~~~~~~~~kl~~---~isv~~q~l~~eD~-~~~~e 571 (858)
T COG5215 504 VKGTELA--LNESN-LRVSLFSALGTLILICPDA-----VSDILAGFYDYTSKKLDE---CISVLGQILATEDQ-LLVEE 571 (858)
T ss_pred HHHHHhh--ccchh-HHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHHHHHHHH---HHHHhhhhhhhHHH-HHHHH
Confidence 6555432 34455 4677899998888876642 1112222211 010000 11111111111111 11222
Q ss_pred hHHHhhhcccCcChhHHHHHHHHhhhccCcccH-HHHHHHHHHHhhhcChH-hHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 001845 350 HQAQIITSLKDPDISIRRRALDLLYGMCDVSNA-KDIVEELLQYLSTADFA-MREELSLKAAILAEKFAPDLSWYVDVIL 427 (1006)
Q Consensus 350 ~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv-~~Iv~eLl~yl~~~d~~-~~~~lv~~I~~laeky~~~~~w~vd~ll 427 (1006)
-++.++..|.. -||++-= +-+.+ +.+++-++.-++..++. .-.+...+|+.++......++.|+....
T Consensus 572 lqSN~~~vl~a---iir~~~~-------~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fi 641 (858)
T COG5215 572 LQSNYIGVLEA---IIRTRRR-------DIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFI 641 (858)
T ss_pred HHHHHHHHHHH---HHHhcCC-------CcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 23333222210 1222111 11223 33666666777776554 4456777888776533333344555444
Q ss_pred HHHHhcCCcchHHHHHHHHHHHhc-----CCCcHHHH---HHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCCh
Q 001845 428 QLIDKAGDFVSDDIWFRVVQFVTN-----NEDLQPYA---AAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSP 499 (1006)
Q Consensus 428 ~ll~~~g~~v~~ei~~~i~~ii~~-----~~~l~~~a---~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~ 499 (1006)
..|..+-+.....+....+.+|.. ..++..|+ ...|.+.|..+..+..+--++.-+.|..+--+..+ -
T Consensus 642 Pyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~----F 717 (858)
T COG5215 642 PYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGAN----F 717 (858)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhh----H
Confidence 444444333333333333433322 34555554 34666667666555433333344444443322210 1
Q ss_pred HHHHH----HHHhh--CCCCC---------hhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001845 500 KEIFS----IIHEK--LPTVS---------MSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKY 550 (1006)
Q Consensus 500 ~~~~~----~l~~~--~~~~s---------~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~ 550 (1006)
..+++ ++... ..-++ ...+..++-+++-+-.-..++...+.+.|..+|+..
T Consensus 718 ~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i 783 (858)
T COG5215 718 ESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKI 783 (858)
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHH
Confidence 12222 12111 11111 234555666666654433355556778888888865
No 58
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.44 E-value=0.14 Score=55.86 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=106.2
Q ss_pred HHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcHHHHHH--hHHHhhhcccCcChhHHHHHHHHhhhcc-CcccHHHH--
Q 001845 312 IALLGKFIA-VREPNIRYLGLENMTRMLMVTDVHDIIKR--HQAQIITSLKDPDISIRRRALDLLYGMC-DVSNAKDI-- 385 (1006)
Q Consensus 312 ~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~~~v~~--~~~~i~~~L~d~D~sIr~~aL~lL~~l~-n~~Nv~~I-- 385 (1006)
.+.|..+|. ++||-++..++-+|...+......+.+.+ -...|...|++++..+|.+||..|-.|. +.+|...|
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 345555665 67999999999999998876544444543 2456778899999999999999999886 44455443
Q ss_pred -HHHHHHHhhh--cChHhHHHHHHHHHHHHhh--cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHH--
Q 001845 386 -VEELLQYLST--ADFAMREELSLKAAILAEK--FAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPY-- 458 (1006)
Q Consensus 386 -v~eLl~yl~~--~d~~~~~~lv~~I~~laek--y~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~-- 458 (1006)
+.++.+-+.. .|.+.+......+..++.. |-.-..-|+..++.||..+.......+.-.+..+ ..+|+...+
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL-S~np~~~~~Ll 172 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL-SENPDMTRELL 172 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh-ccCHHHHHHHH
Confidence 2222222111 3566776666777776532 2233345788888888776544554554444443 344554332
Q ss_pred ---HHHHHHHhhcCCchhhHHHHHHHhhhccc
Q 001845 459 ---AAAKAREYLDKPAIHETMVKVSAYLLGEY 487 (1006)
Q Consensus 459 ---a~~~l~~~L~~~~~~e~l~k~~~wilGEy 487 (1006)
+...+..+++.....+.++++ +++++--
T Consensus 173 ~~q~~~~~~~Lf~~~~~~~~l~~~-l~~~~ni 203 (254)
T PF04826_consen 173 SAQVLSSFLSLFNSSESKENLLRV-LTFFENI 203 (254)
T ss_pred hccchhHHHHHHccCCccHHHHHH-HHHHHHH
Confidence 344555556665555655553 3444433
No 59
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=3.3 Score=49.04 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=138.6
Q ss_pred CchhhhHHHHHhhcccChhHHHHHHH-----HHHhhcCCCChhHHhHHHHhhhcCCC--HHhH-----HHHHHHHHHHHh
Q 001845 85 PEKQVGYIVTSCLLNENHDFLRLAIN-----TVRNDIIGRNETFQCLALTMVGNIGG--REFA-----ESLAPDVQKLII 152 (1006)
Q Consensus 85 ~~KrlgYL~l~~l~~~~~e~~~LviN-----sl~KDL~s~n~~~~~lAL~~l~~i~~--~e~~-----~~l~~~V~~~l~ 152 (1006)
..+.-+--+++.++...+|..-.+++ -|.+=+.|+++.++.-|.-+||||.+ +..- ..+...+..++.
T Consensus 125 ~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 125 TLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred hHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence 33444444444554444443222222 25555778888888888888888776 2221 122344445554
Q ss_pred cCCCChhHHHHHHHHHHHHHhhC-C----CccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCC
Q 001845 153 SSSCRPLVRKKAALCLLRLYRKN-P----DVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDV 227 (1006)
Q Consensus 153 s~~~~~~VRKkA~lal~~l~~~~-p----~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~ 227 (1006)
.+ ..--..|.|.-++..++|.. | +.+ ....+.|..+|.+.|+.|+.-|+-++.++.....+...-.+..
T Consensus 205 ~~-~~~~~lRn~tW~LsNlcrgk~P~P~~~~v--~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~--- 278 (514)
T KOG0166|consen 205 KS-DKLSMLRNATWTLSNLCRGKNPSPPFDVV--APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA--- 278 (514)
T ss_pred cc-cchHHHHHHHHHHHHHHcCCCCCCcHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc---
Confidence 22 22246677778888888765 3 223 3566777778888888888888777777664433322111100
Q ss_pred CccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHH-
Q 001845 228 PQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKE- 306 (1006)
Q Consensus 228 ~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~- 306 (1006)
|+ . -+++.+|.... ..|.--|++++..+-...+
T Consensus 279 -------gv-v----~~LV~lL~~~~----------------------------------~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 279 -------GV-V----PRLVDLLGHSS----------------------------------PKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred -------cc-h----HHHHHHHcCCC----------------------------------cccccHHHhhccceeeccHH
Confidence 00 0 02222222111 1222333344433322111
Q ss_pred -----HHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCc-HHHHH--HhHHHhhhcccCcChhHHHHHHHHhhhcc
Q 001845 307 -----MMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDV-HDIIK--RHQAQIITSLKDPDISIRRRALDLLYGMC 377 (1006)
Q Consensus 307 -----l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~-~~~v~--~~~~~i~~~L~d~D~sIr~~aL~lL~~l~ 377 (1006)
+-..+...|..+++ +....+|=-+..++..|+.-... .++|- .-...++.+|...|..+|+.|.=.+..+|
T Consensus 313 QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 313 QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 11234567777787 45556888888889888874321 12222 23456788899999999999999999999
Q ss_pred CcccH
Q 001845 378 DVSNA 382 (1006)
Q Consensus 378 n~~Nv 382 (1006)
...+-
T Consensus 393 s~g~~ 397 (514)
T KOG0166|consen 393 SSGTP 397 (514)
T ss_pred ccCCH
Confidence 88883
No 60
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.34 E-value=6 Score=51.77 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=83.8
Q ss_pred HHhhcCCCChhHHhHHHHhhhcCCC--HHhH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHH
Q 001845 112 VRNDIIGRNETFQCLALTMVGNIGG--REFA--ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADR 187 (1006)
Q Consensus 112 l~KDL~s~n~~~~~lAL~~l~~i~~--~e~~--~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~ 187 (1006)
|.--|..+-..+|+-||++|+.|.. +.+. +.+-..|..-+. |++..||-+|+--+.|..-.+||.+. ++.+.
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~--DssasVREAaldLvGrfvl~~~e~~~--qyY~~ 896 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN--DSSASVREAALDLVGRFVLSIPELIF--QYYDQ 896 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc--cchhHHHHHHHHHHhhhhhccHHHHH--HHHHH
Confidence 3344556778899999999999876 4332 566666666665 78999999999999999999999995 88899
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHHhcChh
Q 001845 188 MAQLLDERDLGVLTSSMSLLVALVSNNHE 216 (1006)
Q Consensus 188 l~~lL~d~d~~V~~~a~~ll~~I~~~~~~ 216 (1006)
|..-+.|...+|-=-++-.+.+||...|+
T Consensus 897 i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 897 IIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988774
No 61
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=4.6 Score=49.29 Aligned_cols=438 Identities=13% Similarity=0.151 Sum_probs=233.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCC------CchHHHHHHhccCCCcCchhhhHHHHHhhcccCh------------------
Q 001845 47 SPYEKKKYVWKMLYIYMLGYDV------DFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENH------------------ 102 (1006)
Q Consensus 47 ~~~~kkk~v~KLiyi~~lG~dv------~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~------------------ 102 (1006)
|..-+..++.-|.-|+++=|+. +-.|.-.+..|.|.+-+.+-.|-=|++...++.-
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 3455566666566666665552 3355566678888888888888888885555422
Q ss_pred ---------hHHHHHHHHHHh-h----cCCCChh-HHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001845 103 ---------DFLRLAINTVRN-D----IIGRNET-FQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALC 167 (1006)
Q Consensus 103 ---------e~~~LviNsl~K-D----L~s~n~~-~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~la 167 (1006)
++.-...+.+.| | -.+=||. --+--|-.++.....+|.+.+.+.|++.+.+| +-.=|-.|+++
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~p--dwr~reaavmA 387 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNP--DWRNREAAVMA 387 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCc--chhhhhHHHHH
Confidence 455556666766 2 2222333 23455777888889999999999999999754 44567788888
Q ss_pred HHHHHhhCCCcc--c--cCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHH
Q 001845 168 LLRLYRKNPDVV--N--VDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQV 243 (1006)
Q Consensus 168 l~~l~~~~p~~v--~--~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqv 243 (1006)
+..+.. .|+.. . ..+..+-+..++.|+..-|.-++---+..|+...|+. +. +...+|.
T Consensus 388 FGSIl~-gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~---~~--------------n~~~l~~ 449 (859)
T KOG1241|consen 388 FGSILE-GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA---II--------------NQELLQS 449 (859)
T ss_pred HHhhhc-CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh---cc--------------cHhhhhH
Confidence 887663 34322 1 1355667777777777777766666677777665532 11 1222333
Q ss_pred HHHHHHhcCCCCCChhhHH----HHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 001845 244 KTMRALQYFPTVEDPNTRR----SLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFI 319 (1006)
Q Consensus 244 klLrlL~~~~~~~d~~~~~----~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL 319 (1006)
++--++.-+. ++|+... .+..+.+.+-....+ ++.+. +........++.|.+--
T Consensus 450 ~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s----~~qt~----------------~~t~~y~~ii~~Ll~~t 507 (859)
T KOG1241|consen 450 KLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVS----NGQTD----------------PATPFYEAIIGSLLKVT 507 (859)
T ss_pred HHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccC----CCCCC----------------ccchhHHHHHHHHHhhc
Confidence 3333333222 2333222 111111111111110 01111 00112333344443322
Q ss_pred ---cCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHH-HHHHHHhhh
Q 001845 320 ---AVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIV-EELLQYLST 395 (1006)
Q Consensus 320 ---~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv-~eLl~yl~~ 395 (1006)
..++.|+|-.+.++|..|+...+. .+-.- +.+..+-++.+| +..+ .+.+.|-..
T Consensus 508 dr~dgnqsNLR~AAYeALmElIk~st~--~vy~~--------------v~~~~l~il~kl------~q~i~~~~l~~~dr 565 (859)
T KOG1241|consen 508 DRADGNQSNLRSAAYEALMELIKNSTD--DVYPM--------------VQKLTLVILEKL------DQTISSQILSLADR 565 (859)
T ss_pred cccccchhhHHHHHHHHHHHHHHcCcH--HHHHH--------------HHHHHHHHHHHH------HHHHHHHhccHhhH
Confidence 236789999999999999987652 22211 111111112111 0000 222222221
Q ss_pred c-ChHhHHHHHHHHHHHHhhcCCChhhHHHHHH----HHHHhc-CCcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHhhc
Q 001845 396 A-DFAMREELSLKAAILAEKFAPDLSWYVDVIL----QLIDKA-GDFVSDDIWFRVVQFVTNN-EDLQPYAAAKAREYLD 468 (1006)
Q Consensus 396 ~-d~~~~~~lv~~I~~laeky~~~~~w~vd~ll----~ll~~~-g~~v~~ei~~~i~~ii~~~-~~l~~~a~~~l~~~L~ 468 (1006)
. =.++..-++..+..+..|++++.+-+.|.++ +++..+ ...+.+++.-.|-.++.+- +.+-+| ...+..||.
T Consensus 566 ~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ky-m~~f~pyL~ 644 (859)
T KOG1241|consen 566 AQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKY-MPAFKPYLL 644 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHH
Confidence 1 1245555666666666677766666666555 445452 2457777777666665543 233333 345555654
Q ss_pred CC--chhhHHHH-HHHhhhccccccccCCCCCC--hHHHHHHHHhhCCC--CChhHHHHHHHHHHHHHhhcCCCChhHHH
Q 001845 469 KP--AIHETMVK-VSAYLLGEYSHLLARRPGCS--PKEIFSIIHEKLPT--VSMSTVAILLSTYAKILMHTQPADPELQN 541 (1006)
Q Consensus 469 ~~--~~~e~l~k-~~~wilGEyg~~i~~~~~~~--~~~~~~~l~~~~~~--~s~~tr~~iLta~~Kl~~~~~~~~~e~~~ 541 (1006)
.. ++.|.-+. +++=++|.-+.-+.+. +- ..++...|.+.... ..-.+|-.||+++.-+.+-+...|..--+
T Consensus 645 ~gL~n~~e~qVc~~aVglVgdl~raL~~~--i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~ 722 (859)
T KOG1241|consen 645 MGLSNFQEYQVCAAAVGLVGDLARALEDD--ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLE 722 (859)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 32 23443222 2344445544443331 11 23445555555433 34579999999999988776555555556
Q ss_pred HHHHHHHHhc
Q 001845 542 QIWAIFNKYE 551 (1006)
Q Consensus 542 ~v~~vl~~~~ 551 (1006)
.|..+|+...
T Consensus 723 ~vm~llq~as 732 (859)
T KOG1241|consen 723 MVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHH
Confidence 6777777654
No 62
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.06 E-value=0.75 Score=53.70 Aligned_cols=332 Identities=12% Similarity=0.153 Sum_probs=177.4
Q ss_pred HHHHHHhhhc-CCChhHHHHHHHHHHHHHhcChhhhhccCCCC-CCCccc----cccCCCChhHHHHHHHHHhcCCCC--
Q 001845 184 WADRMAQLLD-ERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-DVPQEY----TYYGIPSPWLQVKTMRALQYFPTV-- 255 (1006)
Q Consensus 184 ~~~~l~~lL~-d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l-~~~~ey----~~~~~~~pwlqvklLrlL~~~~~~-- 255 (1006)
+..-+..+|. .++..++-..+.++.++...+|..+..+.... .-+.-| ......+.+.+.+..++|+.+...
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 3344444554 35555666666666666666654221111100 000000 112235777888888888876432
Q ss_pred --CChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHH--HHHHHHHHHhhcC--CCCchhHH
Q 001845 256 --EDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMM--SQCIALLGKFIAV--REPNIRYL 329 (1006)
Q Consensus 256 --~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~--~~~~~~L~~fL~s--~~~niryl 329 (1006)
.+......+.+.+...+.+.+ .+..-.+...|...++..+...... ...+..|...|.. ....+.|-
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~-------~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~ 206 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNIT-------NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQ 206 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccC-------CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHH
Confidence 112222234444554553211 1111122234444445544432211 2345667666653 25588999
Q ss_pred HHHHHHHHHccCCcHHHHH--HhHHHhhhcccC-cChhHHHHHHHHhhhccCcc--------cHHHHHH-HHHHHhh---
Q 001845 330 GLENMTRMLMVTDVHDIIK--RHQAQIITSLKD-PDISIRRRALDLLYGMCDVS--------NAKDIVE-ELLQYLS--- 394 (1006)
Q Consensus 330 aL~~L~~l~~~~~~~~~v~--~~~~~i~~~L~d-~D~sIr~~aL~lL~~l~n~~--------Nv~~Iv~-eLl~yl~--- 394 (1006)
++-++-.|.-..+..+... .....+...+++ .-.-|-|.++-+|..+.+.+ ....+|. .++..+.
T Consensus 207 ~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 207 SIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 9888888876432111111 122233444443 23347778888898888854 2234444 4444443
Q ss_pred ---hcChHhHHHHHHHHHHHHhhcC--CChhhHHHHH-HHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 001845 395 ---TADFAMREELSLKAAILAEKFA--PDLSWYVDVI-LQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLD 468 (1006)
Q Consensus 395 ---~~d~~~~~~lv~~I~~laeky~--~~~~w~vd~l-l~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~ 468 (1006)
-.|.++.+++-.--..|.+++- +.++-|..=+ ...|+=+.-|-++..|..=..-+.++. -..+++|.++|+
T Consensus 287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~---~~llk~L~~iL~ 363 (429)
T cd00256 287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKN---YELLKILIHLLE 363 (429)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcc---hHHHHHHHHHHh
Confidence 2688998887655555655443 3344454433 233333445667888875333333222 247789999996
Q ss_pred CCchhhHHHHHHHhhhccccccccCCCCCChHHHHH------HHHhhCCCCChhHHHHHHHHHHHHHhh
Q 001845 469 KPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFS------IIHEKLPTVSMSTVAILLSTYAKILMH 531 (1006)
Q Consensus 469 ~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~------~l~~~~~~~s~~tr~~iLta~~Kl~~~ 531 (1006)
....+. .+.++++=+|||....+.. ..++. .+.+-...+++++|-..|.|.-|+..+
T Consensus 364 ~s~d~~-~laVAc~Dige~vr~~P~g-----r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 364 TSVDPI-ILAVACHDIGEYVRHYPRG-----KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred cCCCcc-eeehhhhhHHHHHHHCccH-----HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 543333 3456899999998876552 22322 233345678999999999999997554
No 63
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.99 E-value=1.4 Score=57.24 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhcCC-c---HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChh
Q 001845 289 AVLFEALALVMHLDA-E---KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDIS 364 (1006)
Q Consensus 289 aVl~eai~~i~~l~~-~---~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~s 364 (1006)
-+.++.++.+...-. . ........+.+..+|..+..++|-=||++|..|+..+|..-.-..-+..|..-+.|.-.+
T Consensus 791 ~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 791 FADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred cccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 566777777655321 1 234556677777788888899999999999999998764211123455677778899999
Q ss_pred HHHHHHHHhh--hccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCc---chH
Q 001845 365 IRRRALDLLY--GMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDF---VSD 439 (1006)
Q Consensus 365 Ir~~aL~lL~--~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~---v~~ 439 (1006)
+|--||||+- -|++++-+..+-+.+.+-+.+....+|..++.-+..+|+.+ |++.-.++...++|+.-.|. |.+
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-pdf~~i~~~cakmlrRv~DEEg~I~k 949 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET-PDFSKIVDMCAKMLRRVNDEEGNIKK 949 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-CChhhHHHHHHHHHHHhccchhHHHH
Confidence 9999999996 57799988888888888888888889998888888999998 67788899999988875432 444
Q ss_pred HHHHHHHHH
Q 001845 440 DIWFRVVQF 448 (1006)
Q Consensus 440 ei~~~i~~i 448 (1006)
=+...+..+
T Consensus 950 Lv~etf~kl 958 (1692)
T KOG1020|consen 950 LVRETFLKL 958 (1692)
T ss_pred HHHHHHHHH
Confidence 444444444
No 64
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.69 E-value=0.031 Score=52.64 Aligned_cols=101 Identities=21% Similarity=0.182 Sum_probs=78.4
Q ss_pred HHHHHhhcCCCChhHHhHHHHhhhcCCCH------HhHH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCc---
Q 001845 109 INTVRNDIIGRNETFQCLALTMVGNIGGR------EFAE-SLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDV--- 178 (1006)
Q Consensus 109 iNsl~KDL~s~n~~~~~lAL~~l~~i~~~------e~~~-~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~--- 178 (1006)
++.+.+=|.+.++..+..|+.+|+++... .+.+ .+.+.+.+++. +.++.||+.|+-++..+.+..++.
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 44455555667788999999999988762 2333 67788888887 578999999999999999876542
Q ss_pred cccCcHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 001845 179 VNVDGWADRMAQLLDERDLGVLTSSMSLLVALV 211 (1006)
Q Consensus 179 v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~ 211 (1006)
+...+.++.+.++|++.|..+.-.++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222467889999999999999999999988776
No 65
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.65 E-value=1.3 Score=56.21 Aligned_cols=319 Identities=14% Similarity=0.171 Sum_probs=175.7
Q ss_pred HHHHHHHHHhhcCCCChhHHhHH-HHhhhc-CCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccc--
Q 001845 105 LRLAINTVRNDIIGRNETFQCLA-LTMVGN-IGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN-- 180 (1006)
Q Consensus 105 ~~LviNsl~KDL~s~n~~~~~lA-L~~l~~-i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~-- 180 (1006)
+-+++.+|+. +...+--..+|- |..++. +.+....+.+.|.+.-++. |+.+-||-.|+.++.+++-.--+.-+
T Consensus 424 vs~lts~IR~-lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRA-LKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLM--DSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHh-hhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 3455666654 444444333332 233333 4446668999999999997 78999999999999998855433221
Q ss_pred ----cCcHHHHHHhhhcCCChh-HHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCC
Q 001845 181 ----VDGWADRMAQLLDERDLG-VLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTV 255 (1006)
Q Consensus 181 ----~~~~~~~l~~lL~d~d~~-V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~ 255 (1006)
.|-+.+.|..|+.|.+.. |..+=..-+-.++.. .-.|..+...++.- ..++.++. + ..+..
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t-A~rFle~~q~~~~~---g~~n~~ns--e--------t~~~~ 566 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT-AYRFLELTQELRQA---GMLNDPNS--E--------TAPEQ 566 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH-HHHHHHHHHHHHhc---ccccCccc--c--------ccccc
Confidence 134568899999885443 322222222222211 11121111110000 00011110 0 00000
Q ss_pred CChhhHHHHHHHHHHHHc--cCCcccccccCCChhHHHHHHHHHHHhc-CC--cHHHHHHHHHHHHHhhcCCCCchhHHH
Q 001845 256 EDPNTRRSLFEVLQRILM--GTDVVKNVNKNNASHAVLFEALALVMHL-DA--EKEMMSQCIALLGKFIAVREPNIRYLG 330 (1006)
Q Consensus 256 ~d~~~~~~l~~~l~~il~--~~~~~~~~~~~n~~~aVl~eai~~i~~l-~~--~~~l~~~~~~~L~~fL~s~~~niryla 330 (1006)
.-......|.+.+++... -+|..+.+ -.-|+|.+--+|.. .. +.+ .....|..||..+|.++|-.-
T Consensus 567 ~~~~~~~~L~~~V~~~v~sLlsd~~~~V------kr~Lle~i~~LC~FFGk~ksND---~iLshLiTfLNDkDw~LR~aF 637 (1431)
T KOG1240|consen 567 NYNTELQALHHTVEQMVSSLLSDSPPIV------KRALLESIIPLCVFFGKEKSND---VILSHLITFLNDKDWRLRGAF 637 (1431)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHHHHHHhhhccccc---chHHHHHHHhcCccHHHHHHH
Confidence 011123334444443331 11211111 12344544444442 11 222 245789999999999999999
Q ss_pred HHHHHHHHccCCcHHHHHHhH-HHhhhcccCcChhHHHHHHHHhhhccCccc-----HHHHHHHHHHHhhhcChHhHHHH
Q 001845 331 LENMTRMLMVTDVHDIIKRHQ-AQIITSLKDPDISIRRRALDLLYGMCDVSN-----AKDIVEELLQYLSTADFAMREEL 404 (1006)
Q Consensus 331 L~~L~~l~~~~~~~~~v~~~~-~~i~~~L~d~D~sIr~~aL~lL~~l~n~~N-----v~~Iv~eLl~yl~~~d~~~~~~l 404 (1006)
.+++.-++-.-+. ..+.++. ..+.+-|.|..+-+--+||.-|..||--.+ +.+|++..+-|+-..+.-+|+.+
T Consensus 638 fdsI~gvsi~VG~-rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 638 FDSIVGVSIFVGW-RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred HhhccceEEEEee-eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHH
Confidence 9998866542211 1233332 345677889989888888888887775554 55677777778888889999999
Q ss_pred HHHHHHHHhhcC---------CChhhHHHHH-------HHHHHhcCCcchHHHHHHHHHHHh
Q 001845 405 SLKAAILAEKFA---------PDLSWYVDVI-------LQLIDKAGDFVSDDIWFRVVQFVT 450 (1006)
Q Consensus 405 v~~I~~laeky~---------~~~~w~vd~l-------l~ll~~~g~~v~~ei~~~i~~ii~ 450 (1006)
+.=|+..++++. |-.+=|+..- ..|++.-.+.|+.++|+.+++.-.
T Consensus 717 ~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVsRsv~~~l~r~~~ 778 (1431)
T KOG1240|consen 717 LGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVSRSVFNQLLRWSD 778 (1431)
T ss_pred HHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCcHHHHHHHHHHhh
Confidence 888887776653 2223333322 124444456788999998877544
No 66
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.57 E-value=1.3 Score=50.45 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=78.6
Q ss_pred chHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHH
Q 001845 70 FGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQK 149 (1006)
Q Consensus 70 f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~ 149 (1006)
...-.+++++.+++...|.-+.-++..+-. .-++..+.+-|.+.++.+|..|..+++.++.++-.+.+...+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~ 116 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN 116 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Confidence 345566777788777777666655444322 23667777888888888899999999999988777766665543
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhH
Q 001845 150 LIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGV 199 (1006)
Q Consensus 150 ~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V 199 (1006)
|.+.+||+.|+.++.++-... -+..+..++.|.+.++
T Consensus 117 -----d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 117 -----DENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGS 153 (335)
T ss_pred -----CCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhh
Confidence 578889999988888765432 2455667777777776
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.50 E-value=0.047 Score=51.35 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=76.9
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc-H-HHHH-HhHHHhhhcccCcChhHHHHHHHHhhhccCccc--HHH-
Q 001845 311 CIALLGKFIAVREPNIRYLGLENMTRMLMVTDV-H-DIIK-RHQAQIITSLKDPDISIRRRALDLLYGMCDVSN--AKD- 384 (1006)
Q Consensus 311 ~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~-~-~~v~-~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~N--v~~- 384 (1006)
.+..|..++.+.++.+|..++.+|..++...+. . ..+. .-...+..++.|+|..+++.++..|..++.... ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 567788888888899999999999999986432 1 1222 345567788889999999999999999986652 121
Q ss_pred ----HHHHHHHHhhhcChHhHHHHHHHHHHHHh
Q 001845 385 ----IVEELLQYLSTADFAMREELSLKAAILAE 413 (1006)
Q Consensus 385 ----Iv~eLl~yl~~~d~~~~~~lv~~I~~lae 413 (1006)
++..|.+++...+..+++.++..+..+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45667777777788888888777776653
No 68
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=6.5 Score=47.06 Aligned_cols=387 Identities=16% Similarity=0.100 Sum_probs=206.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhh----hccCCCCCCCcc
Q 001845 155 SCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAY----WSCLPKCDVPQE 230 (1006)
Q Consensus 155 ~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~----~~~v~~l~~~~e 230 (1006)
|.++.||++=+-+....+..+.+.-. .++.+...+.|+.....-+......+......+...+ ...+..+
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~~~v-~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~----- 101 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGDQNV-LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEIL----- 101 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhHHHH-HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHH-----
Confidence 67888999988888888877765432 3677777777764323333333333333332221111 1111111
Q ss_pred ccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHH
Q 001845 231 YTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQ 310 (1006)
Q Consensus 231 y~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~ 310 (1006)
..-.+.|++-.|--...+|.-+....+..........+.++++.++. .. ....-++...+.-.......--..
T Consensus 102 ~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~------~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 102 LEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKI-AE------RAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred HHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccH-HH------HhhhhHHHHHHHcCcHHhhhhhhh
Confidence 01245788888888888877654432222222333444445542211 10 122334444444332222222234
Q ss_pred HHHHHHHhhcCCCCc----hhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhc---cCcccHH
Q 001845 311 CIALLGKFIAVREPN----IRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGM---CDVSNAK 383 (1006)
Q Consensus 311 ~~~~L~~fL~s~~~n----irylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l---~n~~Nv~ 383 (1006)
.+..|.+++..+.+- ..-++........... ....+.+....|+.|..|....+|..|.+-.-.+ .+.--++
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~-~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP-FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC-CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 556677777654332 2333444433333322 1125667888899999999999999876655444 5666777
Q ss_pred HHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhc----CCcchHHHHHHHHHH--HhcCCCcHH
Q 001845 384 DIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKA----GDFVSDDIWFRVVQF--VTNNEDLQP 457 (1006)
Q Consensus 384 ~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~----g~~v~~ei~~~i~~i--i~~~~~l~~ 457 (1006)
.++.-++.-+.+..=.-+...+.-++.+++--+.-.+.|...++..++.. ...+.+.....+.++ +..|++++.
T Consensus 254 ~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~ 333 (569)
T KOG1242|consen 254 LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK 333 (569)
T ss_pred HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 77777777665543344555666667666544445566666666554432 223555544444443 235677766
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHhh--hccccccccCCCCCChHHHHHHHHhhCCCCChhHHH---HHHHHHHHHHhhc
Q 001845 458 YAAAKAREYLDKPAIHETMVKVSAYL--LGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVA---ILLSTYAKILMHT 532 (1006)
Q Consensus 458 ~a~~~l~~~L~~~~~~e~l~k~~~wi--lGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~---~iLta~~Kl~~~~ 532 (1006)
.+.+|.+.+.+|..... .++.. -++|.+.+.. | +-.-++-++...+...+.+++- .+.--++| +
T Consensus 334 -~ip~Lld~l~dp~~~~~---e~~~~L~~ttFV~~V~~-p--sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~----L 402 (569)
T KOG1242|consen 334 -IIPTLLDALADPSCYTP---ECLDSLGATTFVAEVDA-P--SLALMVPILKRGLAERSTSIKRKTAIIIDNMCK----L 402 (569)
T ss_pred -HHHHHHHHhcCcccchH---HHHHhhcceeeeeeecc-h--hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH----h
Confidence 56889999998863321 12333 3466666643 1 1222334555556666666653 34445555 3
Q ss_pred CCCChhHHHH---HHHHHHHhccCCChHHHHHHHHHH
Q 001845 533 QPADPELQNQ---IWAIFNKYESCIEVEIQQRAVEYF 566 (1006)
Q Consensus 533 ~~~~~e~~~~---v~~vl~~~~~s~d~EvqqRA~eyl 566 (1006)
.....++.+- +..=++....+.++|+|.-|..-+
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 3222233333 333344456777999976665544
No 69
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.25 E-value=0.45 Score=51.86 Aligned_cols=144 Identities=16% Similarity=0.203 Sum_probs=86.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHhhCC---CccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccC
Q 001845 146 DVQKLIISSSCRPLVRKKAALCLLRLYRKNP---DVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL 222 (1006)
Q Consensus 146 ~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p---~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v 222 (1006)
.+..+|.+ ..+|+++.+|..++... ..+| +.+..-+-++.|..+|+++++.|...|+.++..
T Consensus 16 ~Ll~lL~~-t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N------------- 80 (254)
T PF04826_consen 16 KLLCLLES-TEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN------------- 80 (254)
T ss_pred HHHHHHhc-CCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh-------------
Confidence 34445553 57899999999998874 3333 344333445666666666666666555544443
Q ss_pred CCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcC
Q 001845 223 PKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLD 302 (1006)
Q Consensus 223 ~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~ 302 (1006)
+... .+....+...+.+++..+-+ ...|+ .+-..+.+++.++.
T Consensus 81 -----------------------------ls~~--~en~~~Ik~~i~~Vc~~~~s----~~lns--~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 81 -----------------------------LSVN--DENQEQIKMYIPQVCEETVS----SPLNS--EVQLAGLRLLTNLT 123 (254)
T ss_pred -----------------------------cCCC--hhhHHHHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHccC
Confidence 3221 11111222333333321100 01122 55567788888875
Q ss_pred Cc---HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC
Q 001845 303 AE---KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT 341 (1006)
Q Consensus 303 ~~---~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~ 341 (1006)
-. ..++...+..+..+|.+.+.++|+-+|+.|..|+...
T Consensus 124 v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 124 VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 43 3566777888888999999999999999999999864
No 70
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.16 E-value=0.068 Score=67.05 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=106.5
Q ss_pred HHHHHHhcc----CCCcCchhhhHHHHHhhcccChhH----HHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC--HHhHH
Q 001845 72 HMEAVSLIS----APKYPEKQVGYIVTSCLLNENHDF----LRLAINTVRNDIIGRNETFQCLALTMVGNIGG--REFAE 141 (1006)
Q Consensus 72 ~~~vi~L~~----S~~~~~KrlgYL~l~~l~~~~~e~----~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~--~e~~~ 141 (1006)
.+=+++++. .++.++.+-+||++..+.--..++ +-+.++.+-| +++|.+||++.=.+|.+.- |.+++
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimek---sp~p~IRsN~VvalgDlav~fpnlie 997 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEK---SPSPRIRSNLVVALGDLAVRFPNLIE 997 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc---CCCceeeecchheccchhhhcccccc
Confidence 344556663 345678899999998887665443 3344444432 8999999999999998654 88999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC
Q 001845 142 SLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNN 214 (1006)
Q Consensus 142 ~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~ 214 (1006)
...+.+.+-|. |.++.|||.|++.+.+|+-.+==-++ +.+.++..+|.|++..+---|=..+.|+..+-
T Consensus 998 ~~T~~Ly~rL~--D~~~~vRkta~lvlshLILndmiKVK--Gql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 998 PWTEHLYRRLR--DESPSVRKTALLVLSHLILNDMIKVK--GQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hhhHHHHHHhc--CccHHHHHHHHHHHHHHHHhhhhHhc--ccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 99999999997 78999999999999999977644444 77889999999999999888888888888654
No 71
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=2.3 Score=51.25 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=56.5
Q ss_pred HhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhc--ChHhHHHHHHHHHHHHhhcCC---ChhhHHHHHH
Q 001845 353 QIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTA--DFAMREELSLKAAILAEKFAP---DLSWYVDVIL 427 (1006)
Q Consensus 353 ~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~--d~~~~~~lv~~I~~laeky~~---~~~w~vd~ll 427 (1006)
.|-.=|.+.|+.-...||..+-.++..++.+..-.++-+-+... .+.+|......+..|-.++|. .-+| .+-++
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W-~~riv 193 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEW-AQRIV 193 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhH-HHHHH
Confidence 33333444555555666666666666666666666666655543 234555555555555555442 1244 34455
Q ss_pred HHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHH
Q 001845 428 QLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAA 461 (1006)
Q Consensus 428 ~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~ 461 (1006)
.||....--|......-|.-++.++|+-+..++.
T Consensus 194 ~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 194 HLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred HHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence 5554443224445555555555666655444333
No 72
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.72 E-value=0.44 Score=50.99 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChh-----HHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc--hHHH
Q 001845 503 FSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPE-----LQNQIWAIFNKYESCIEVEIQQRAVEYFALSRK--GAAL 575 (1006)
Q Consensus 503 ~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e-----~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~--~~~~ 575 (1006)
+..+......-++.+|...+..+..+.-.+....+. ..+.+.+.+..+..|.++|||+-|++.+..+.. ++-.
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 344444455566777777776666654443200111 235678888888999999999999999888865 5666
Q ss_pred HHhhhcCCC
Q 001845 576 MDILAEMPK 584 (1006)
Q Consensus 576 ~~vl~~mP~ 584 (1006)
+.+++.++|
T Consensus 213 ~~~~~~l~~ 221 (228)
T PF12348_consen 213 ESILSMLDP 221 (228)
T ss_dssp ---------
T ss_pred ccchhcchh
Confidence 666666654
No 73
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.57 E-value=6.9 Score=46.24 Aligned_cols=316 Identities=15% Similarity=0.168 Sum_probs=183.2
Q ss_pred cCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCCCccc----------c---
Q 001845 116 IIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLY-RKNPDVVN----------V--- 181 (1006)
Q Consensus 116 L~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~-~~~p~~v~----------~--- 181 (1006)
.-++++.+|-.|=.-|-++...++.+.+.-.+.-+... .++++.|-.|.+++-.-+ -++|+.-. .
T Consensus 14 vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~-ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k 92 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDL-NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESK 92 (858)
T ss_pred cCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHH
Confidence 45667777777766777777777666666555555543 467788877777775433 33332211 0
Q ss_pred CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC------hhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCC
Q 001845 182 DGWADRMAQLLDERDLGVLTSSMSLLVALVSNN------HEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTV 255 (1006)
Q Consensus 182 ~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~------~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~ 255 (1006)
+..-....+.|....|....+|..++-.|+... |+.+..++... ..--..=+.+.-|..+.+.+.+
T Consensus 93 ~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv--------g~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 93 EQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV--------GDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc--------cccCchHhHHHHHHHHHHHhhc
Confidence 122334556788889999999999999998644 33444444322 0011122445566777777777
Q ss_pred CChhhHHHH-HHHHHHHHccCCcccccccCCChhHHHHHHHHHHHh-cC------CcHHHHHHHHHHHHHhhcCCCCchh
Q 001845 256 EDPNTRRSL-FEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMH-LD------AEKEMMSQCIALLGKFIAVREPNIR 327 (1006)
Q Consensus 256 ~d~~~~~~l-~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~-l~------~~~~l~~~~~~~L~~fL~s~~~nir 327 (1006)
.+|+..-.+ ..++..+.... +++-...+|-+.+.++++. +. ...+-+....+..+.--.++|.+++
T Consensus 165 ~~Pe~li~~sN~il~aiv~ga------~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q 238 (858)
T COG5215 165 EAPEDLIQMSNVILFAIVMGA------LKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQ 238 (858)
T ss_pred cCHHHHHHHhhHHHHHHHHhh------cccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHH
Confidence 677433222 23344444221 1111244777777777765 21 1122233344444444567888999
Q ss_pred HHHHHHHHHHHccCCcHHHHHHhHHHhh-----hcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhh---cChH
Q 001845 328 YLGLENMTRMLMVTDVHDIIKRHQAQII-----TSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLST---ADFA 399 (1006)
Q Consensus 328 ylaL~~L~~l~~~~~~~~~v~~~~~~i~-----~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~---~d~~ 399 (1006)
..++-+|.+|..-+- +.++.+....+ ...++++..|+..|++.-..+|.|++=..... +|+.+ -++.
T Consensus 239 ~aafgCl~kim~LyY--~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~---~~~pe~p~qn~~ 313 (858)
T COG5215 239 HAAFGCLNKIMMLYY--KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMED---KYLPEVPAQNHG 313 (858)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHH---hhcccCchhhcc
Confidence 999999999987542 34555544433 33467888899999999999998886544443 34443 2444
Q ss_pred hHHHHH----HHHHHHHhhcCC---ChhhHHH----HHHHHHH-hcCCcchHHHHHHHHHHHhc
Q 001845 400 MREELS----LKAAILAEKFAP---DLSWYVD----VILQLID-KAGDFVSDDIWFRVVQFVTN 451 (1006)
Q Consensus 400 ~~~~lv----~~I~~laeky~~---~~~w~vd----~ll~ll~-~~g~~v~~ei~~~i~~ii~~ 451 (1006)
|.+..+ --|..|-+|-.+ +-.|-+. ..|+|.. ..|+++-+-+|.-+-|=|++
T Consensus 314 fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~ 377 (858)
T COG5215 314 FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS 377 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC
Confidence 544433 333445455322 2346543 2344443 35777777788877776654
No 74
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=16 Score=44.75 Aligned_cols=397 Identities=15% Similarity=0.239 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHH-hccCCCcCchhhhHHHHHhhcccCh-h----HHHHHHHHHHhhcCCCChhHH
Q 001845 51 KKKYVWKMLYIYMLGYDVDFGHMEAVS-LISAPKYPEKQVGYIVTSCLLNENH-D----FLRLAINTVRNDIIGRNETFQ 124 (1006)
Q Consensus 51 kkk~v~KLiyi~~lG~dv~f~~~~vi~-L~~S~~~~~KrlgYL~l~~l~~~~~-e----~~~LviNsl~KDL~s~n~~~~ 124 (1006)
|.-.+|-.+|....|.++=.--+.-|+ -++++|...|-.+-+++...++.-. + +..=+.+++.+-+.|++-.++
T Consensus 344 kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~Vk 423 (859)
T KOG1241|consen 344 KAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVK 423 (859)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhc
Confidence 455667777777888886544444455 8999999999999999888887632 2 223345677788888887777
Q ss_pred hHHHHhhhcCCC--------HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc--------CcHHHHH
Q 001845 125 CLALTMVGNIGG--------REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV--------DGWADRM 188 (1006)
Q Consensus 125 ~lAL~~l~~i~~--------~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~--------~~~~~~l 188 (1006)
--|=-+++.|.+ .+....+.....+.|. ..|.|--+++=++..+-...++.... ..|...+
T Consensus 424 dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~---DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii 500 (859)
T KOG1241|consen 424 DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN---DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAII 500 (859)
T ss_pred chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh---hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHH
Confidence 777777776543 3344555566666664 58889888888888887666655431 1355666
Q ss_pred Hhhhc--C----CChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHh--cCCCCCChhh
Q 001845 189 AQLLD--E----RDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQ--YFPTVEDPNT 260 (1006)
Q Consensus 189 ~~lL~--d----~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~--~~~~~~d~~~ 260 (1006)
..||. | .+...-.+|...|.++.++.++.+...+.++ .+....||=+.++ .+.. +|.
T Consensus 501 ~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~------------~l~il~kl~q~i~~~~l~~-~dr-- 565 (859)
T KOG1241|consen 501 GSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKL------------TLVILEKLDQTISSQILSL-ADR-- 565 (859)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHH------------HHHHHHHHHHHHHHHhccH-hhH--
Confidence 67774 3 3345678899999999998888765544332 1222233333333 1111 111
Q ss_pred HHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhc-CCc-HHHHHHHHHHHHHhhcCCC----CchhHHHHHHH
Q 001845 261 RRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHL-DAE-KEMMSQCIALLGKFIAVRE----PNIRYLGLENM 334 (1006)
Q Consensus 261 ~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l-~~~-~~l~~~~~~~L~~fL~s~~----~nirylaL~~L 334 (1006)
..+ +.|+ +++..++..++.. .+. .+......+.+.+.+.+++ ++--+++..+|
T Consensus 566 -~q~-~eLQ-------------------s~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl 624 (859)
T KOG1241|consen 566 -AQL-NELQ-------------------SLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTL 624 (859)
T ss_pred -HHH-HHHH-------------------HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHH
Confidence 111 1111 3333333333332 111 2223334444444454422 34455565555
Q ss_pred HHHHccCCcHHHHHHhHHHh----hhcc-cCcChhHHHHHHHHhhhccCc--ccHH----HHHHHHHHHhhh--cChHhH
Q 001845 335 TRMLMVTDVHDIIKRHQAQI----ITSL-KDPDISIRRRALDLLYGMCDV--SNAK----DIVEELLQYLST--ADFAMR 401 (1006)
Q Consensus 335 ~~l~~~~~~~~~v~~~~~~i----~~~L-~d~D~sIr~~aL~lL~~l~n~--~Nv~----~Iv~eLl~yl~~--~d~~~~ 401 (1006)
...... -|.+|...| ..-| +-.|..+---++-+.-.+|+. +++. .++..|++.+.+ .+-++|
T Consensus 625 ~~~Lg~-----~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vK 699 (859)
T KOG1241|consen 625 AESLGK-----GFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVK 699 (859)
T ss_pred HHHHhH-----hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccccc
Confidence 544432 133344333 2334 345556766777777766653 3333 444455555554 356777
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCC------------c---chHHHHH---HHHHHHhcCCC--cHHHHHH
Q 001845 402 EELSLKAAILAEKFAPDLSWYVDVILQLIDKAGD------------F---VSDDIWF---RVVQFVTNNED--LQPYAAA 461 (1006)
Q Consensus 402 ~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~------------~---v~~ei~~---~i~~ii~~~~~--l~~~a~~ 461 (1006)
-.+...-+.+|.-...+++-|++.++.++..+.+ | +.+.+++ .|+|=+.++++ +-.--+.
T Consensus 700 P~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~ 779 (859)
T KOG1241|consen 700 PAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVP 779 (859)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchH
Confidence 7777777888877778889999999999988641 1 1122222 22332333222 2222345
Q ss_pred HHHHhhc----CCchhhHHHHHHHhhhccccccc
Q 001845 462 KAREYLD----KPAIHETMVKVSAYLLGEYSHLL 491 (1006)
Q Consensus 462 ~l~~~L~----~~~~~e~l~k~~~wilGEyg~~i 491 (1006)
+++.++. ++...+.+.+.++=++|.-....
T Consensus 780 ~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~f 813 (859)
T KOG1241|consen 780 HIISFIDRIAAEPDVSEALHAAALGLIGDLATMF 813 (859)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHc
Confidence 6666653 55567888887777777665544
No 75
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.45 E-value=4.1 Score=49.03 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhh
Q 001845 144 APDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEA 217 (1006)
Q Consensus 144 ~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~ 217 (1006)
...|..... .++-+|+-|+-=+.|+|+.+|++-. .-++.+.+|.+|.|..|-..|+.-|-.+|+++++.
T Consensus 25 y~~il~~~k---g~~k~K~Laaq~I~kffk~FP~l~~--~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~ 93 (556)
T PF05918_consen 25 YKEILDGVK---GSPKEKRLAAQFIPKFFKHFPDLQE--EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH 93 (556)
T ss_dssp HHHHHHGGG---S-HHHHHHHHHHHHHHHCC-GGGHH--HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-
T ss_pred HHHHHHHcc---CCHHHHHHHHHHHHHHHhhChhhHH--HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH
Confidence 334444443 4788999999999999999999984 88999999999999999999998888888776654
No 76
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=15 Score=44.03 Aligned_cols=310 Identities=17% Similarity=0.133 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHH---HhCCCCCchHHHHHHhccCCCcCchhhhHHHHHhhcccC---hhHHHHHHHHHHhhcCCCChhH-
Q 001845 51 KKKYVWKMLYIY---MLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNEN---HDFLRLAINTVRNDIIGRNETF- 123 (1006)
Q Consensus 51 kkk~v~KLiyi~---~lG~dv~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~---~e~~~LviNsl~KDL~s~n~~~- 123 (1006)
-.+.+.+++--+ ..|++.+.......+++.+.++.+++-+=-.+.-+.+.+ .+.=...+-.+.+=..+.+...
T Consensus 112 ~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~ 191 (569)
T KOG1242|consen 112 VQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALN 191 (569)
T ss_pred HHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhc
Confidence 445566554333 366777888888899999999887654433444444332 1111233444555555544432
Q ss_pred ---HhHHHHhhhcCCCHHhHHH---HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCC-ccccCcHHHHHHhhhcCCC
Q 001845 124 ---QCLALTMVGNIGGREFAES---LAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPD-VVNVDGWADRMAQLLDERD 196 (1006)
Q Consensus 124 ---~~lAL~~l~~i~~~e~~~~---l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~-~v~~~~~~~~l~~lL~d~d 196 (1006)
.++|..+.+..-++..-++ +.|.|.... +|..+.||..|..|.--+.+..+. .++ .-....|..++.+ .
T Consensus 192 re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~--~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-~llpsll~~l~~~-k 267 (569)
T KOG1242|consen 192 REAALLAFEAAQGNLGPPFEPYIVPILPSILTNF--GDKINKVREAAVEAAKAIMRCLSAYAVK-LLLPSLLGSLLEA-K 267 (569)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh--hccchhhhHHHHHHHHHHHHhcCcchhh-HhhhhhHHHHHHH-h
Confidence 3334333333222333333 344444444 378999999999999888877654 333 2223334444444 2
Q ss_pred hhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCC
Q 001845 197 LGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD 276 (1006)
Q Consensus 197 ~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~ 276 (1006)
-.--.+++.++-.+....|.....|.|.+ .-++...|.. ..+++++.-.+++.++-
T Consensus 268 WrtK~aslellg~m~~~ap~qLs~~lp~i----------------iP~lsevl~D----T~~evr~a~~~~l~~~~---- 323 (569)
T KOG1242|consen 268 WRTKMASLELLGAMADCAPKQLSLCLPDL----------------IPVLSEVLWD----TKPEVRKAGIETLLKFG---- 323 (569)
T ss_pred hhhHHHHHHHHHHHHHhchHHHHHHHhHh----------------hHHHHHHHcc----CCHHHHHHHHHHHHHHH----
Confidence 22233444444444444444333233221 0011111211 13333333333333221
Q ss_pred cccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCC-CchhHHHHHHHHHHHccCCc-HHHHHHhHHHh
Q 001845 277 VVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVRE-PNIRYLGLENMTRMLMVTDV-HDIIKRHQAQI 354 (1006)
Q Consensus 277 ~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~-~nirylaL~~L~~l~~~~~~-~~~v~~~~~~i 354 (1006)
..-.+. .++..++.|..-+.... .... +++.|..-.-.... ...+.--...+
T Consensus 324 -----------------------svidN~-dI~~~ip~Lld~l~dp~~~~~e--~~~~L~~ttFV~~V~~psLalmvpiL 377 (569)
T KOG1242|consen 324 -----------------------SVIDNP-DIQKIIPTLLDALADPSCYTPE--CLDSLGATTFVAEVDAPSLALMVPIL 377 (569)
T ss_pred -----------------------HhhccH-HHHHHHHHHHHHhcCcccchHH--HHHhhcceeeeeeecchhHHHHHHHH
Confidence 111122 24445555554443222 1111 12222111110000 01111112223
Q ss_pred hhcccCcChhHHHHHHHHh---hhcc-CcccHHHHHHHHHHHhhh----cChHhHHHHHHHHHHHHhh
Q 001845 355 ITSLKDPDISIRRRALDLL---YGMC-DVSNAKDIVEELLQYLST----ADFAMREELSLKAAILAEK 414 (1006)
Q Consensus 355 ~~~L~d~D~sIr~~aL~lL---~~l~-n~~Nv~~Iv~eLl~yl~~----~d~~~~~~lv~~I~~laek 414 (1006)
-.-+.+++.+++|++..+. ++++ |+..+...+.+|+.-++. ++++.|....++++.+-++
T Consensus 378 ~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 378 KRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 3456788889999876655 5555 788888888888876663 5789999999999877654
No 77
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=2.8 Score=53.43 Aligned_cols=275 Identities=14% Similarity=0.144 Sum_probs=153.3
Q ss_pred HHHHHHhCCCCCchHHHHHHhccC-CCcCchhhhHHHHHhh------cccChhHHHHHHHHHHh-hcCCCChhHHhHHHH
Q 001845 58 MLYIYMLGYDVDFGHMEAVSLISA-PKYPEKQVGYIVTSCL------LNENHDFLRLAINTVRN-DIIGRNETFQCLALT 129 (1006)
Q Consensus 58 Liyi~~lG~dv~f~~~~vi~L~~S-~~~~~KrlgYL~l~~l------~~~~~e~~~LviNsl~K-DL~s~n~~~~~lAL~ 129 (1006)
..|++..+.|+.-.+.+.+.-.++ .+ +..--.++++++ ....++-.+-..+++.. +.++.+.-++-=|-+
T Consensus 599 ~~~~~~t~~dv~~~l~~s~~e~as~~~--~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yr 676 (1176)
T KOG1248|consen 599 VDYFTVTPTDVVGSLKDSAGELASDLD--ESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYR 676 (1176)
T ss_pred HHHhhcccHHHHHHHHHHHHhHhccch--hhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHH
Confidence 357788888887777777764444 43 222222222222 11122222222234444 344447777777666
Q ss_pred hhhcCCC----HHhH----HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC----CccccCcHHHHHHhhhcCCCh
Q 001845 130 MVGNIGG----REFA----ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP----DVVNVDGWADRMAQLLDERDL 197 (1006)
Q Consensus 130 ~l~~i~~----~e~~----~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p----~~v~~~~~~~~l~~lL~d~d~ 197 (1006)
.|..+.. .-.. +++...+.+.+. +...+.|+.++-|+.++|+..| +.+. ..++++.=.+.|.|.
T Consensus 677 lL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 677 LLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcccccH
Confidence 6555433 2233 444444444444 4677899999999999999999 4443 344444434467777
Q ss_pred hHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCc
Q 001845 198 GVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDV 277 (1006)
Q Consensus 198 ~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~ 277 (1006)
.---+|..+|..|+... .+ . +.. +|+ ....+.+++..+..+. .
T Consensus 753 ~aR~~Af~lL~~i~~i~--~~----~--------d~g---------------------~e~-~~~~lnefl~~Isagl-~ 795 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQ--SS----L--------DDG---------------------NEP-ASAILNEFLSIISAGL-V 795 (1176)
T ss_pred HHHhhHHHHHHHHHHHH--hh----h--------ccc---------------------ccc-hHHHHHHHHHHHHhhh-c
Confidence 77788888888888510 00 0 000 111 1112333333222110 0
Q ss_pred ccccccCCChhHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHh-
Q 001845 278 VKNVNKNNASHAVLFEALALVMHLD--AEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQI- 354 (1006)
Q Consensus 278 ~~~~~~~n~~~aVl~eai~~i~~l~--~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i- 354 (1006)
....++.+ .. ++....++..-. .+.+.+...++.++.+|.++.+.++-.|+.-+..++...|. ..++.|...+
T Consensus 796 gd~~~~~a--s~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe-~~l~~~~~~LL 871 (1176)
T KOG1248|consen 796 GDSTRVVA--SD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE-ECLSPHLEELL 871 (1176)
T ss_pred ccHHHHHH--HH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH-HHHhhhHHHHH
Confidence 00001111 11 222222222221 14567888899999999999999999999999999998764 4677777544
Q ss_pred ---hhcccCcChhHHHHHHHHhhhccCc
Q 001845 355 ---ITSLKDPDISIRRRALDLLYGMCDV 379 (1006)
Q Consensus 355 ---~~~L~d~D~sIr~~aL~lL~~l~n~ 379 (1006)
+..++|....+|.+...||-.|+-.
T Consensus 872 ~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 872 PSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4445566677777666666555443
No 78
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.06 E-value=5.4 Score=48.05 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=45.8
Q ss_pred hHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC--HHhHHHHHHHHH
Q 001845 71 GHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGG--REFAESLAPDVQ 148 (1006)
Q Consensus 71 ~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~--~e~~~~l~~~V~ 148 (1006)
.|-+++..... +..+||++=-++..|+..-|++.--++|++..=+.|.+..+|--|++.|..++. ++.+.-++.-+.
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 45566666664 577888888888888888888877777776544444444444444444444442 344444444444
Q ss_pred HHHh
Q 001845 149 KLII 152 (1006)
Q Consensus 149 ~~l~ 152 (1006)
++|.
T Consensus 103 QlL~ 106 (556)
T PF05918_consen 103 QLLQ 106 (556)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 4443
No 79
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.94 E-value=0.34 Score=57.63 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=115.5
Q ss_pred HHHHH-HhccC----CCcCchhhhHHHHHhhcccChh----HHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC--HHhH
Q 001845 72 HMEAV-SLISA----PKYPEKQVGYIVTSCLLNENHD----FLRLAINTVRNDIIGRNETFQCLALTMVGNIGG--REFA 140 (1006)
Q Consensus 72 ~~~vi-~L~~S----~~~~~KrlgYL~l~~l~~~~~e----~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~--~e~~ 140 (1006)
|..+| +++++ +|-+.-+-+||.+..+.--..+ -+-|.|-++.| +++|.+|+.|.-.+|.... ..++
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek---~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEK---HPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---CCCcceeccceeeccccceehhhhh
Confidence 44444 45555 4556777889887766543322 22333333332 8999999999998887554 6667
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhc
Q 001845 141 ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWS 220 (1006)
Q Consensus 141 ~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~ 220 (1006)
+.....+.+-|. |.+..|||.+.+.+.-++-...=-++ +...++..+|.|.|.++---|=.++.++++++-..|-.
T Consensus 970 de~t~yLyrrL~--De~~~V~rtclmti~fLilagq~KVK--Gqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~ 1045 (1128)
T COG5098 970 DEHTHYLYRRLG--DEDADVRRTCLMTIHFLILAGQLKVK--GQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNG 1045 (1128)
T ss_pred HHHHHHHHHHhc--chhhHHHHHHHHHHHHHHHccceeec--cchhhhHhhccCCcchHHHHHHHHHHHHHhcccchhhh
Confidence 777888888785 78999999999999988876654554 67789999999999999888888999999877544332
Q ss_pred ---cCCCCCCCccccccCCCChhHHHHHHHHHhcCCC
Q 001845 221 ---CLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPT 254 (1006)
Q Consensus 221 ---~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~ 254 (1006)
+...+ +.+-. .---| --+|+++|..|..
T Consensus 1046 fidifs~l--s~~ae--~g~e~--fk~II~FLt~fI~ 1076 (1128)
T COG5098 1046 FIDIFSTL--SSDAE--NGQEP--FKLIIGFLTDFIS 1076 (1128)
T ss_pred hHHHHHHc--Cchhh--cCCCc--HHHHHHHHHHHHH
Confidence 32222 11100 11123 3478888888764
No 80
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.71 E-value=1 Score=55.48 Aligned_cols=135 Identities=16% Similarity=0.235 Sum_probs=91.9
Q ss_pred CCCCchHHHHHHhccCCCcC----chhhhHHHHHhhccc----C--------hhHHHHHHHHHHhhcCCCChhHHhHHHH
Q 001845 66 YDVDFGHMEAVSLISAPKYP----EKQVGYIVTSCLLNE----N--------HDFLRLAINTVRNDIIGRNETFQCLALT 129 (1006)
Q Consensus 66 ~dv~f~~~~vi~L~~S~~~~----~KrlgYL~l~~l~~~----~--------~e~~~LviNsl~KDL~s~n~~~~~lAL~ 129 (1006)
++.....-++..|+.++... ++.-+.|++..+.+. . .++.--+.+.+.+.....++..+-++|+
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 34444555555677665333 444455555544431 1 2344445555566666678888999999
Q ss_pred hhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhc--CCChhHHHHHHHHH
Q 001845 130 MVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLD--ERDLGVLTSSMSLL 207 (1006)
Q Consensus 130 ~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~--d~d~~V~~~a~~ll 207 (1006)
+|||++.+..+..+.+.+. -+...++++|..|+.|+.++-..+|+.+. +.+..++. +.++-|-.+|+.++
T Consensus 469 aLGN~g~~~~i~~l~~~l~---~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 469 ALGNAGHPSSIKVLEPYLE---GAEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred hhhccCChhHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999888876 12246789999999999999888998775 34445554 46777887777666
Q ss_pred H
Q 001845 208 V 208 (1006)
Q Consensus 208 ~ 208 (1006)
.
T Consensus 541 m 541 (574)
T smart00638 541 M 541 (574)
T ss_pred H
Confidence 5
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.69 E-value=0.21 Score=44.43 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=58.6
Q ss_pred HHHhc-cCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhc
Q 001845 75 AVSLI-SAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIIS 153 (1006)
Q Consensus 75 vi~L~-~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s 153 (1006)
.++.+ .+++...|.-+.-++..+- +++ +++.+.+=+.|+|+.+|..|+.+|+.+++++ ..+.+.+++.+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~--~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELG--DPE----AIPALIELLKDEDPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCT--HHH----HHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--CHh----HHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 45555 6667777777666666442 233 3555666668899999999999999998765 45555667764
Q ss_pred CCCChhHHHHHHHHH
Q 001845 154 SSCRPLVRKKAALCL 168 (1006)
Q Consensus 154 ~~~~~~VRKkA~lal 168 (1006)
+.+..||..|+-++
T Consensus 74 -~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 74 -DDDEVVREAAAEAL 87 (88)
T ss_dssp --SSHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHhhc
Confidence 56788899998876
No 82
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.59 E-value=0.29 Score=45.07 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhc----ccCcChhHH
Q 001845 292 FEALALVMHLDA-EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITS----LKDPDISIR 366 (1006)
Q Consensus 292 ~eai~~i~~l~~-~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~----L~d~D~sIr 366 (1006)
.....+.+.+.. ..+.+...+.++...+...|..+||.+.++|..++.... +.+-.|...||.. ..|.|.+||
T Consensus 8 i~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr 85 (97)
T PF12755_consen 8 IGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVR 85 (97)
T ss_pred HHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHH
Confidence 333344444443 345677888888888889999999999999999998643 3455577777654 459999998
Q ss_pred HHHHHHhh
Q 001845 367 RRALDLLY 374 (1006)
Q Consensus 367 ~~aL~lL~ 374 (1006)
.-| ++|-
T Consensus 86 ~~a-~~Ld 92 (97)
T PF12755_consen 86 SAA-ELLD 92 (97)
T ss_pred HHH-HHHH
Confidence 755 4443
No 83
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=9.4 Score=50.11 Aligned_cols=379 Identities=13% Similarity=0.123 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc--CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh--
Q 001845 141 ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV--DGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE-- 216 (1006)
Q Consensus 141 ~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~--~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~-- 216 (1006)
+++..-.+++.++ +..-.=||=||.++-.+.....+.+.+ ..+++++.+.=-|+|+.|..+-.+....+..+...
T Consensus 955 PdLVYKFM~LAnh-~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen 955 PDLVYKFMQLANH-NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV 1033 (1702)
T ss_pred hHHHHHHHHHhhh-hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH
Confidence 5666666777764 344566888999999999888776642 24566666666699999999888888887765422
Q ss_pred ------hhhccCCCCCCCccccccCCCChhH-----HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCC
Q 001845 217 ------AYWSCLPKCDVPQEYTYYGIPSPWL-----QVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNN 285 (1006)
Q Consensus 217 ------~~~~~v~~l~~~~ey~~~~~~~pwl-----qvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n 285 (1006)
.+..+++.+ ...+|= ...+.++|+. +. ...+.+++-++...++.-.|..|. .-++
T Consensus 1034 d~y~neIl~eLL~~l----------t~kewRVReasclAL~dLl~g--~~-~~~~~e~lpelw~~~fRvmDDIKE-sVR~ 1099 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNL----------TSKEWRVREASCLALADLLQG--RP-FDQVKEKLPELWEAAFRVMDDIKE-SVRE 1099 (1702)
T ss_pred HHHHHHHHHHHHHhc----------cchhHHHHHHHHHHHHHHHcC--CC-hHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 234444443 234453 2345555553 22 334556666666666644343321 0012
Q ss_pred ChhHHHHHHHHHHHhcC-C-cHHHHHHHHHHHHHhh-----cCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcc
Q 001845 286 ASHAVLFEALALVMHLD-A-EKEMMSQCIALLGKFI-----AVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSL 358 (1006)
Q Consensus 286 ~~~aVl~eai~~i~~l~-~-~~~l~~~~~~~L~~fL-----~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L 358 (1006)
++.--.-...++++.+. . +..--+.+++.+.-|| .|+=+++|=+++.++..|+.+.+ ..+++|..+++.||
T Consensus 1100 aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg--~~lkP~~~~LIp~l 1177 (1702)
T KOG0915|consen 1100 AADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG--KELKPHFPKLIPLL 1177 (1702)
T ss_pred HHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch--hhhcchhhHHHHHH
Confidence 21111122223333322 1 1111223334444443 36778999999999999999886 46889988887765
Q ss_pred cCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcch
Q 001845 359 KDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVS 438 (1006)
Q Consensus 359 ~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~ 438 (1006)
-+- +..+=..-+.|+.-.-..+..+.+.....=+-|-.| ...++-+++..-...+-
T Consensus 1178 l~~--------------------~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akssp----mmeTi~~ci~~iD~~vL 1233 (1702)
T KOG0915|consen 1178 LNA--------------------YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSP----MMETINKCINYIDISVL 1233 (1702)
T ss_pred HHH--------------------ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc----HHHHHHHHHHhhhHHHH
Confidence 321 012233445566543345555555555443334333 23455555555444566
Q ss_pred HHHHHHHHHHHhcCCCcHHH-HHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhH
Q 001845 439 DDIWFRVVQFVTNNEDLQPY-AAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMST 517 (1006)
Q Consensus 439 ~ei~~~i~~ii~~~~~l~~~-a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~t 517 (1006)
++++-+++++++..-.+-.+ .+...+ +-+.-.||.... |+ ..++++.+...+.+.++.+
T Consensus 1234 eelip~l~el~R~sVgl~Tkvg~A~fI----------------~~L~~r~~~emt--P~--sgKll~al~~g~~dRNesv 1293 (1702)
T KOG0915|consen 1234 EELIPRLTELVRGSVGLGTKVGCASFI----------------SLLVQRLGSEMT--PY--SGKLLRALFPGAKDRNESV 1293 (1702)
T ss_pred HHHHHHHHHHHhccCCCCcchhHHHHH----------------HHHHHHhccccC--cc--hhHHHHHHhhccccccHHH
Confidence 77777777777654333221 111111 111112332221 12 3578888888888899999
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc-hHHHHHhhhcC
Q 001845 518 VAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRK-GAALMDILAEM 582 (1006)
Q Consensus 518 r~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~-~~~~~~vl~~m 582 (1006)
|-+.=.|+.+|+-. ......+..+.+++..+....+.+=+-++.-...+.+. .+.++.....|
T Consensus 1294 ~kafAsAmG~L~k~--Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaI 1357 (1702)
T KOG0915|consen 1294 RKAFASAMGYLAKF--SSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAI 1357 (1702)
T ss_pred HHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHH
Confidence 99888888886532 33335667777777777644444335555555555554 45555444443
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.04 E-value=4.2 Score=47.61 Aligned_cols=193 Identities=18% Similarity=0.147 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHH
Q 001845 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRR 368 (1006)
Q Consensus 289 aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~ 368 (1006)
.|--++++.+-.+... .+...|..+|.+.++.+|+.++..+.... ..+ . ..+..+|+|+|.++|..
T Consensus 101 ~vr~aaa~ALg~i~~~-----~a~~~L~~~L~~~~p~vR~aal~al~~r~-~~~----~----~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 101 GLCAGIQAALGWLGGR-----QAEPWLEPLLAASEPPGRAIGLAALGAHR-HDP----G----PALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHHHHhcCCch-----HHHHHHHHHhcCCChHHHHHHHHHHHhhc-cCh----H----HHHHHHhcCCCHHHHHH
Confidence 5777888888776653 35677888899999999999997765522 111 2 13456688999999999
Q ss_pred HHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 001845 369 ALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQF 448 (1006)
Q Consensus 369 aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~i 448 (1006)
|+..|-.+...+-.. .|...+.+.|.++|...+..++.+... .-| +.++.+....|.+........+. +
T Consensus 167 A~raLG~l~~~~a~~----~L~~al~d~~~~VR~aA~~al~~lG~~----~A~--~~l~~~~~~~g~~~~~~l~~~la-l 235 (410)
T TIGR02270 167 ALRALGELPRRLSES----TLRLYLRDSDPEVRFAALEAGLLAGSR----LAW--GVCRRFQVLEGGPHRQRLLVLLA-V 235 (410)
T ss_pred HHHHHHhhccccchH----HHHHHHcCCCHHHHHHHHHHHHHcCCH----hHH--HHHHHHHhccCccHHHHHHHHHH-h
Confidence 999999998876444 455678889999999988888766432 123 45666555666554433332221 1
Q ss_pred HhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001845 449 VTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAK 527 (1006)
Q Consensus 449 i~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~K 527 (1006)
. ..+ .++..|..+++++... ..++|.+|..|+- +.+..|..... .+.++...-.++-|
T Consensus 236 ~-~~~----~a~~~L~~ll~d~~vr----~~a~~AlG~lg~p----------~av~~L~~~l~--d~~~aR~A~eA~~~ 293 (410)
T TIGR02270 236 A-GGP----DAQAWLRELLQAAATR----REALRAVGLVGDV----------EAAPWCLEAMR--EPPWARLAGEAFSL 293 (410)
T ss_pred C-Cch----hHHHHHHHHhcChhhH----HHHHHHHHHcCCc----------chHHHHHHHhc--CcHHHHHHHHHHHH
Confidence 1 112 5777888888886533 3468999988862 12333333222 22266666666666
No 85
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.99 E-value=0.32 Score=44.77 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc--CcHHHHHHhhhcCCChhHHHHHHHHHHH
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV--DGWADRMAQLLDERDLGVLTSSMSLLVA 209 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~--~~~~~~l~~lL~d~d~~V~~~a~~ll~~ 209 (1006)
.+..+.+.+.|.+++. |.++-||--|+-|++.+.+...+.+-. ++..+.+.+++.|.|+.|..+|- ++..
T Consensus 22 ~~~l~~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~ 93 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFD--DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDR 93 (97)
T ss_pred HHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHH
Confidence 5557899999999997 789999999999999999998766531 24556667788899999998884 4443
No 86
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=92.96 E-value=0.32 Score=47.90 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred HHhhhccCceeeecCCCeEEEEEEeE-----ecceeEEEEEEeecCCCCcceeEEEEeC-CCceeEEeecCCcccCCCCe
Q 001845 735 FHALCLKDSGVLYEDPYVQIGIKAEW-----RGHHGRLVLFLGNKNTSPLFSVQALILP-PSHLKMELSLVPETIPPRAQ 808 (1006)
Q Consensus 735 ~~~ll~~~~GvlYe~~~lqI~~k~~~-----~~~~~~i~l~~~Nks~~~lt~f~~~~~~-p~~l~~~~~~~~~tI~p~~q 808 (1006)
.+.|++.-.| ++|.+.|++.+ .++++.|.++|.|++..+++++.+.-.. +.+++++-.+.-..|+||+.
T Consensus 57 ~~eLL~~v~G-----~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s 131 (145)
T PF14796_consen 57 KYELLNRVNG-----KGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGAS 131 (145)
T ss_pred eEEeeeccCC-----CceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCe
Confidence 4566776677 99999999854 6678999999999999999998664333 44777754332278999987
Q ss_pred eEEEEEE
Q 001845 809 VQCPLEV 815 (1006)
Q Consensus 809 ~q~~v~v 815 (1006)
++..+-|
T Consensus 132 ~t~~lgI 138 (145)
T PF14796_consen 132 VTVSLGI 138 (145)
T ss_pred EEEEEEE
Confidence 6644433
No 87
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.75 E-value=23 Score=41.06 Aligned_cols=259 Identities=12% Similarity=0.155 Sum_probs=146.2
Q ss_pred cCCCcCchhhhHHHHHhhcccCh---------hHHHHHHHHHHhhcCC-------CChhHHhHHHHhhhcCC-CHHhH--
Q 001845 80 SAPKYPEKQVGYIVTSCLLNENH---------DFLRLAINTVRNDIIG-------RNETFQCLALTMVGNIG-GREFA-- 140 (1006)
Q Consensus 80 ~S~~~~~KrlgYL~l~~l~~~~~---------e~~~LviNsl~KDL~s-------~n~~~~~lAL~~l~~i~-~~e~~-- 140 (1006)
++.+-+.|.=+|+.+...+.... +-+-+.+..+++|+.+ -+.....-||++++.+- .++++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 45666777788888777776532 3456888999999988 45567889999999854 34444
Q ss_pred ------HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcC-----CChhHHHHHHHHHHH
Q 001845 141 ------ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE-----RDLGVLTSSMSLLVA 209 (1006)
Q Consensus 141 ------~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d-----~d~~V~~~a~~ll~~ 209 (1006)
.-+..+-...+..+. .+-.--++.+.+++.-+..|..+. .+...++...+.+ +...++.-++.++..
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~-~~K~i~~~~l~~ls~Q~f~~~~~~-~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPN-SPKSICTHYLWCLSDQKFSPKIMT-SDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCCCcccc-hhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 323333344444332 333333445555666666677665 4566777766642 345667777777777
Q ss_pred HHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhH
Q 001845 210 LVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHA 289 (1006)
Q Consensus 210 I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~a 289 (1006)
+....|+.+...+ +-|+-.-+-+++.. ...++.+...++..+....+ .+.
T Consensus 161 ll~q~p~~M~~~~---------------~~W~~~l~~~l~~~-----~k~ir~~a~~l~~~~~~~l~----------~~~ 210 (372)
T PF12231_consen 161 LLSQFPQQMIKHA---------------DIWFPILFPDLLSS-----AKDIRTKAISLLLEAKKCLG----------PNK 210 (372)
T ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHhhc-----chHHHHHHHHHHHHHHHHhC----------hhH
Confidence 7777776543332 34777666666643 22233322222222211101 012
Q ss_pred HHHHHHHHHHh--cCCcHHHHHHHHHHHHHhhcCCCCchhHHHH-HHHHHHHccC--CcHHHHHHhHHHhhhcccCcChh
Q 001845 290 VLFEALALVMH--LDAEKEMMSQCIALLGKFIAVREPNIRYLGL-ENMTRMLMVT--DVHDIIKRHQAQIITSLKDPDIS 364 (1006)
Q Consensus 290 Vl~eai~~i~~--l~~~~~l~~~~~~~L~~fL~s~~~nirylaL-~~L~~l~~~~--~~~~~v~~~~~~i~~~L~d~D~s 364 (1006)
-+...+.-++. +.+. .+.+..++.|.+++.+++...--.-+ ..+..|.... ..-+.+.+...-+..|+++.|+.
T Consensus 211 ~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred HHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHH
Confidence 22233333333 2223 57777888888888764433322222 2233333211 11134666666667799999999
Q ss_pred HHHHHHH
Q 001845 365 IRRRALD 371 (1006)
Q Consensus 365 Ir~~aL~ 371 (1006)
+|..|+.
T Consensus 290 ~k~~A~~ 296 (372)
T PF12231_consen 290 VKIQAFK 296 (372)
T ss_pred HHHHHHH
Confidence 9988875
No 88
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.43 E-value=22 Score=40.93 Aligned_cols=227 Identities=17% Similarity=0.205 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCC---ccccCcHHHHHHhhhcCC--ChhHHH-------------
Q 001845 140 AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPD---VVNVDGWADRMAQLLDER--DLGVLT------------- 201 (1006)
Q Consensus 140 ~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~---~v~~~~~~~~l~~lL~d~--d~~V~~------------- 201 (1006)
.......++..+.+++++.|+ -.|+-|+--+++..+= .+..++. ..+...|... +..+++
T Consensus 154 ~~~~~~~l~~~l~~~~~~~~~-~~~~rcLQ~ll~~~eyR~~~v~adg~-~~l~~~l~s~~~~~QlQYqsifciWlLtFn~ 231 (442)
T KOG2759|consen 154 LDVYKGFLKEQLQSSTNNDYI-QFAARCLQTLLRVDEYRYAFVIADGV-SLLIRILASTKCGFQLQYQSIFCIWLLTFNP 231 (442)
T ss_pred HHHHHHHHHHHHhccCCCchH-HHHHHHHHHHhcCcchhheeeecCcc-hhhHHHHhccCcchhHHHHHHHHHHHhhcCH
Confidence 456667788888765555554 5666677666665441 1111221 2333333111 111111
Q ss_pred ---------HHHHHHHHHHhcChh---------hhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCC--CChhhH
Q 001845 202 ---------SSMSLLVALVSNNHE---------AYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTV--EDPNTR 261 (1006)
Q Consensus 202 ---------~a~~ll~~I~~~~~~---------~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~--~d~~~~ 261 (1006)
..+..+.+|.++..+ .|++++++- +.-+...-...+..|+++++.++.+... +|+++.
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~--~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~ 309 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG--PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLV 309 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHH
Confidence 233444455544421 355666543 1112222245788888888887765432 466665
Q ss_pred HHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCc-----------HHH---HHHHHHHHHHhhc-CCCCch
Q 001845 262 RSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAE-----------KEM---MSQCIALLGKFIA-VREPNI 326 (1006)
Q Consensus 262 ~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~-----------~~l---~~~~~~~L~~fL~-s~~~ni 326 (1006)
+.+ +.|...|.. ++++-.+----.-|.-.-.++++|. ..+ --..+..|.++|. |+||-+
T Consensus 310 ~di-~~L~e~L~~-----svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 310 DDI-EFLTEKLKN-----SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred HHH-HHHHHHHHH-----HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 554 333333411 1111111001122333333445441 011 1234566777776 567999
Q ss_pred hHHHHHHHHHHHccCCcHH-HHHHh--HHHhhhcccCcChhHHHHHHHHhhhc
Q 001845 327 RYLGLENMTRMLMVTDVHD-IIKRH--QAQIITSLKDPDISIRRRALDLLYGM 376 (1006)
Q Consensus 327 rylaL~~L~~l~~~~~~~~-~v~~~--~~~i~~~L~d~D~sIr~~aL~lL~~l 376 (1006)
-.+|..-+.+.+...|... .|.++ ...|+.+++.+|+-||.-||--+.++
T Consensus 384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9999999999999877432 34443 45789999999999999999877765
No 89
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.39 E-value=3.9 Score=52.21 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 001845 157 RPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVS 212 (1006)
Q Consensus 157 ~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~ 212 (1006)
.+.-|.+|+.-+..+-+.--|....+...+.+..++.|+...|...|+..++++..
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~ 491 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLA 491 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 34445555444444444444444446888999999999999999999999988775
No 90
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.34 E-value=3.5 Score=46.19 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCC-hhHHHHH-HHHHHHhccCCChHHHHH
Q 001845 499 PKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPAD-PELQNQI-WAIFNKYESCIEVEIQQR 561 (1006)
Q Consensus 499 ~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~-~e~~~~v-~~vl~~~~~s~d~EvqqR 561 (1006)
...+.+.+.+.+..+++++|+.+...++||+.+-.-.. +++-..+ ...|.. ....+.++||=
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p-~t~~~~~LrQ~ 175 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNP-STEDNQRLRQC 175 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCc-ccCCcHHHHHH
Confidence 45667777777777788899999999999887622223 3332222 222222 23445667663
No 91
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.22 E-value=35 Score=45.25 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=125.5
Q ss_pred cChhHHHHHHHHhhhc--cCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcC-CChhhHHHHHHHHHHhcC---
Q 001845 361 PDISIRRRALDLLYGM--CDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFA-PDLSWYVDVILQLIDKAG--- 434 (1006)
Q Consensus 361 ~D~sIr~~aL~lL~~l--~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~-~~~~w~vd~ll~ll~~~g--- 434 (1006)
.-.+++.+--++++.| +...-+-.|+.+|..-|...+.++|.+++.-+|.+-..+. ...+-|-++...+|..-.
T Consensus 234 ~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~ 313 (1266)
T KOG1525|consen 234 RQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDIS 313 (1266)
T ss_pred cccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCC
Confidence 3345666777777765 5777777888888888888899999999988887643221 112334444444444332
Q ss_pred CcchHHHHHHHHHHHhcCCCcHHHHHHHHH--HhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCC
Q 001845 435 DFVSDDIWFRVVQFVTNNEDLQPYAAAKAR--EYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPT 512 (1006)
Q Consensus 435 ~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~--~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~ 512 (1006)
.-|.=+++....+++.++|+..+-....+. ...-|+.. ..-..++...-+....-- ...+. ++....+|.-+
T Consensus 314 ~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~--rir~~v~i~~~~v~~~~l---~~~~~-ll~~~~eR~rD 387 (1266)
T KOG1525|consen 314 VEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDV--RVRTQVVIVACDVMKFKL---VYIPL-LLKLVAERLRD 387 (1266)
T ss_pred hhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhh--hheeeEEEEEeehhHhhh---hhhHH-HHHHHHHHHhh
Confidence 236667788888888999987664322222 12222211 111111111111111100 01133 66666777777
Q ss_pred CChhHHHHHHHHHHHHHhhcCC--------------------------CChhHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 001845 513 VSMSTVAILLSTYAKILMHTQP--------------------------ADPELQNQIWAIFNKYESCIEVEIQQRAVEYF 566 (1006)
Q Consensus 513 ~s~~tr~~iLta~~Kl~~~~~~--------------------------~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl 566 (1006)
--..||-.++..++++|-+.+. ...+.+..|..+|..|+...+.++|.|-.-.+
T Consensus 388 Kk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~ 467 (1266)
T KOG1525|consen 388 KKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLY 467 (1266)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 7778888888888887765110 01235567788999999999999999999888
Q ss_pred HHhcc
Q 001845 567 ALSRK 571 (1006)
Q Consensus 567 ~Ll~~ 571 (1006)
.++..
T Consensus 468 ~~l~~ 472 (1266)
T KOG1525|consen 468 QLLAG 472 (1266)
T ss_pred HHHhc
Confidence 88876
No 92
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=8.3 Score=43.22 Aligned_cols=245 Identities=14% Similarity=0.117 Sum_probs=149.7
Q ss_pred hcCCCCchhHHHHHHHHHHHccCCcHHHHHH--hHHHhhhcccCcChhHHHHHHHHhhhcc-CcccHHHHHH-----HHH
Q 001845 319 IAVREPNIRYLGLENMTRMLMVTDVHDIIKR--HQAQIITSLKDPDISIRRRALDLLYGMC-DVSNAKDIVE-----ELL 390 (1006)
Q Consensus 319 L~s~~~nirylaL~~L~~l~~~~~~~~~v~~--~~~~i~~~L~d~D~sIr~~aL~lL~~l~-n~~Nv~~Iv~-----eLl 390 (1006)
..+...++|..+..++..|+..+...-.+.+ -..-+..+-+.+|+-+++-++..|..|+ ..+|-+.+|. -|.
T Consensus 135 mmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLV 214 (550)
T KOG4224|consen 135 MMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLV 214 (550)
T ss_pred hcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhh
Confidence 3466778899999999999887542211211 1223344556899999999999999997 4567777764 466
Q ss_pred HHhhhcChHhHHHHHHHHHHHHh------hcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCc----HHHHH
Q 001845 391 QYLSTADFAMREELSLKAAILAE------KFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDL----QPYAA 460 (1006)
Q Consensus 391 ~yl~~~d~~~~~~lv~~I~~lae------ky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l----~~~a~ 460 (1006)
.-+...|.+.+.....+|+.++. +.+..-...|..+.+|+..+.+.+.-..-..+..+-....-. +.-.+
T Consensus 215 sll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~l 294 (550)
T KOG4224|consen 215 SLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSL 294 (550)
T ss_pred hhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCc
Confidence 67777899999988888887652 233444467888899998887777666555555543332211 22246
Q ss_pred HHHHHhhcCCchhhHHHHHHHhhhcccc------ccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCC
Q 001845 461 AKAREYLDKPAIHETMVKVSAYLLGEYS------HLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQP 534 (1006)
Q Consensus 461 ~~l~~~L~~~~~~e~l~k~~~wilGEyg------~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~ 534 (1006)
..++++|+++..+. +-...+++-..+ -+|.+.. . -.-++++|. ...+.+.|+...+++-.+... +.
T Consensus 295 P~lv~Llqs~~~pl--ilasVaCIrnisihplNe~lI~dag-f-l~pLVrlL~---~~dnEeiqchAvstLrnLAas-se 366 (550)
T KOG4224|consen 295 PLLVELLQSPMGPL--ILASVACIRNISIHPLNEVLIADAG-F-LRPLVRLLR---AGDNEEIQCHAVSTLRNLAAS-SE 366 (550)
T ss_pred hHHHHHHhCcchhH--HHHHHHHHhhcccccCcccceeccc-c-hhHHHHHHh---cCCchhhhhhHHHHHHHHhhh-hh
Confidence 68889998875543 223344442221 1122110 0 011333332 346778999999998884431 00
Q ss_pred CC-hhHHH-HHHHHHHHhccCCChHHHHHHHHHHHHhcc
Q 001845 535 AD-PELQN-QIWAIFNKYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 535 ~~-~e~~~-~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
+. ..++. -.+..+.....|...++|.|-.-.++.+..
T Consensus 367 ~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 367 HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 10 11211 123334444578889999998888777776
No 93
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=38 Score=42.31 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHHHhhcCCC-ChhHHhHHHHhhhc---CCCHHh-----HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc
Q 001845 109 INTVRNDIIGR-NETFQCLALTMVGN---IGGREF-----AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV 179 (1006)
Q Consensus 109 iNsl~KDL~s~-n~~~~~lAL~~l~~---i~~~e~-----~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v 179 (1006)
.+.|..-|+.. +|..+--||.-||- +++.+. ++.+.|.+.++|.. ..++-+---|+-|+..|+..+|..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~-E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH-EHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhccchh
Confidence 45555667665 88888889988886 455443 58999999999985 5689999999999999999999643
Q ss_pred ---ccCcHHHHHHhhhcC-CChhHHHHHHHHHHHHHhcChh
Q 001845 180 ---NVDGWADRMAQLLDE-RDLGVLTSSMSLLVALVSNNHE 216 (1006)
Q Consensus 180 ---~~~~~~~~l~~lL~d-~d~~V~~~a~~ll~~I~~~~~~ 216 (1006)
..++.++.+..-|-. .=..|.=-++.++..|.+.+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 223455555443322 3334555666677777766654
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.54 E-value=0.54 Score=38.05 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=37.4
Q ss_pred hhHHhHHHHhhhcCCC--HH----hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001845 121 ETFQCLALTMVGNIGG--RE----FAESLAPDVQKLIISSSCRPLVRKKAALCLLRL 171 (1006)
Q Consensus 121 ~~~~~lAL~~l~~i~~--~e----~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l 171 (1006)
|.+|..|+.+||++.. ++ ..+.+.+.+.++|. |+++.||.+|+.|+-+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~--d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ--DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence 4578899999998763 22 34677788888886 56779999999998654
No 95
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.39 E-value=0.42 Score=33.94 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 001845 143 LAPDVQKLIISSSCRPLVRKKAALCLLRLYRK 174 (1006)
Q Consensus 143 l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~ 174 (1006)
+.|.+.+++. |.++.||+.|+.|+..+.+.
T Consensus 1 llp~l~~~l~--D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLN--DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT---SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 4678889997 78999999999999998764
No 96
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.25 E-value=2.4 Score=50.84 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=95.2
Q ss_pred hHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCC-----CHHhHH-------HHHHHHHHHHhcCCCC
Q 001845 90 GYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIG-----GREFAE-------SLAPDVQKLIISSSCR 157 (1006)
Q Consensus 90 gYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~-----~~e~~~-------~l~~~V~~~l~s~~~~ 157 (1006)
.-+++-.+..-.|.+++---+.+-+=|.|..-..||.-+...||+. +++|.+ .+..-+..-+. |.+
T Consensus 282 islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~--D~~ 359 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLS--DTY 359 (1128)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhh--ccc
Confidence 3455555555566676666788888889999999999999999963 466665 44444444443 899
Q ss_pred hhHHHHHHHHHHHHHhhCCCccc-cCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCh
Q 001845 158 PLVRKKAALCLLRLYRKNPDVVN-VDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNH 215 (1006)
Q Consensus 158 ~~VRKkA~lal~~l~~~~p~~v~-~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~ 215 (1006)
||+|-||+..+.++|..+.-... ..+++..+...|.|+..-|--.|+.++..+.-.+|
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999988765542 24678888889999999999999999999887665
No 97
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=91.23 E-value=0.88 Score=39.95 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=36.8
Q ss_pred cceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCC-cccCCCCeeEEEEEEEe
Q 001845 762 GHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMN 817 (1006)
Q Consensus 762 ~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~-~tI~p~~q~q~~v~v~~ 817 (1006)
|....+.+.+.|....++.++++.+..|+++.....+.. ..|+||++.+..+.|+.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTV 60 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEEC
Confidence 456889999999999999999999999999884444444 58999998888888887
No 98
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=90.92 E-value=2.1 Score=41.31 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=68.0
Q ss_pred EEec-cCceeecccccccCChhhHHHHhhhcCCCCcceeEeecCCCCCCHHHHHHHHhccceEEecCCC--CCCCcEEEE
Q 001845 840 VKLR-LPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANLFNSCHLIVCPGLD--PNPNNLVAS 916 (1006)
Q Consensus 840 ~~Lk-lPi~~~kf~~p~~~~~~~F~~rW~~i~~~~~E~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~d--~~~~n~~~a 916 (1006)
+.|. +-|.+-+|+.|..++..+|++.|....= +++ ..++.......+-+..+++..+|.++.-.. ...-.+++|
T Consensus 5 viLNdIhIdImDyI~Pa~~~~~~FR~mW~eFEW-ENK--i~V~t~~~dl~~yl~~i~k~tnM~~Ltp~~~l~~~~~fl~~ 81 (129)
T PF14806_consen 5 VILNDIHIDIMDYIKPATCSDEEFRSMWAEFEW-ENK--ISVNTNITDLREYLDHIMKSTNMKCLTPESALSGDCGFLSA 81 (129)
T ss_pred EEcccceEcHHHhcCcccCCHHHHHHHHHhhee-eee--EEEecCCCCHHHHHHHHHHhcCcceeccccccCCCCCEEEE
Confidence 3454 6778889999999999999999997762 232 233433333445577788899998876321 112233333
Q ss_pred EEEeecCCC-ceeEEEEEeeCcccCceEEEEEEeCCCchHHHH
Q 001845 917 TTFYSESTR-AMLCLTRIETDPADRTQLRMTVASGDPTLTFEL 958 (1006)
Q Consensus 917 Gi~~~~~~g-~~~~Lvrie~~~~~~~~~ritvRs~~~~ls~~i 958 (1006)
-.+-....| ...+=+-+|-.+.+...-.+.+||-..++|..+
T Consensus 82 Nlya~S~fgedaL~Nlsiek~~~~~i~G~vRIRSk~qgia~sl 124 (129)
T PF14806_consen 82 NLYARSIFGEDALANLSIEKQADGKISGHVRIRSKTQGIALSL 124 (129)
T ss_pred EEEEEeccCCeeEEEEEEEecCCCeEEEEEEEeeCCcChhhhh
Confidence 322222112 233334444433444455667777777776554
No 99
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.76 E-value=56 Score=41.27 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 001845 139 FAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVS 212 (1006)
Q Consensus 139 ~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~ 212 (1006)
+-..+-+-+.++.. |..|.||+.++--+..+-+.-+.....+...+....++.|..-.|..+|+..+..+..
T Consensus 234 vk~elr~~~~~lc~--d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~ 305 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQ--DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLD 305 (759)
T ss_pred HHHHHHHHHHhhcc--ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHH
Confidence 33455555566654 7899999999988887777766654445677888888888777899888888887765
No 100
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.58 E-value=65 Score=41.78 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=98.0
Q ss_pred CchHHHHHHhccCCCcCc-----hhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHH-----
Q 001845 69 DFGHMEAVSLISAPKYPE-----KQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGRE----- 138 (1006)
Q Consensus 69 ~f~~~~vi~L~~S~~~~~-----KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e----- 138 (1006)
....-.+++-+.+..+.+ .+..=.++..+...-|-+++=-.+.+.+=|.+.+...|+.-+..++++.-.+
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 344555666666665544 3444455666655566666655666666677788889999999999864322
Q ss_pred ---hH----HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccc-cCcHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 001845 139 ---FA----ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN-VDGWADRMAQLLDERDLGVLTSSMSLLVAL 210 (1006)
Q Consensus 139 ---~~----~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~-~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I 210 (1006)
+. ..+...+..-+. |.++|||-|++-.+.|+++.+-.-+. ..++......-|.|++.-|-.+|+.++..+
T Consensus 349 ~~~~sk~~r~~~le~l~erl~--Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLL--DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 22 224455555554 78999999999999999988754442 012333334455699999999999999999
Q ss_pred HhcCh
Q 001845 211 VSNNH 215 (1006)
Q Consensus 211 ~~~~~ 215 (1006)
..++|
T Consensus 427 L~~~P 431 (1251)
T KOG0414|consen 427 LDRHP 431 (1251)
T ss_pred HhcCC
Confidence 88876
No 101
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=30 Score=42.97 Aligned_cols=245 Identities=15% Similarity=0.224 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHhhcCCC----ChhHHhHHHHhhhcCCC---HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC
Q 001845 103 DFLRLAINTVRNDIIGR----NETFQCLALTMVGNIGG---REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKN 175 (1006)
Q Consensus 103 e~~~LviNsl~KDL~s~----n~~~~~lAL~~l~~i~~---~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~ 175 (1006)
++.-..+|.+.-||.++ +|..++-|++.+-..+. ++.+-.+.|.+.+.|. ..+..|-+=||.|+=|++...
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~--a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLE--AESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHhccccc
Confidence 34455788899999984 47788999998876664 7777888888888886 358899999999998887655
Q ss_pred CC----ccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhc
Q 001845 176 PD----VVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQY 251 (1006)
Q Consensus 176 p~----~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~ 251 (1006)
-. +...++. .|.|......|+.. + ..| .+.-++++.--|+|++..
T Consensus 530 e~~~~~if~~~~i-----------ap~~~~ll~nLf~a-----------~----s~p-----~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 530 ENSNAKIFGAEDI-----------APFVEILLTNLFKA-----------L----SLP-----GKAENEYLMKAIMRIISI 578 (960)
T ss_pred cCccccccchhhc-----------chHHHHHHHHHHHh-----------c----cCC-----cccccHHHHHHHHHHHHh
Confidence 43 1111111 22222222222211 1 111 123589999999999987
Q ss_pred CCCCC---ChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCC--cHH----HHHHHHHHHHHhhcCC
Q 001845 252 FPTVE---DPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA--EKE----MMSQCIALLGKFIAVR 322 (1006)
Q Consensus 252 ~~~~~---d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~--~~~----l~~~~~~~L~~fL~s~ 322 (1006)
....- -+.....|.+++..+. ||..+- --+.-+||++-+++.... +.. +.......++..|+..
T Consensus 579 ~~~~i~p~~~~~l~~Lteiv~~v~------KNPs~P-~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD 651 (960)
T KOG1992|consen 579 LQSAIIPHAPELLRQLTEIVEEVS------KNPSNP-QFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED 651 (960)
T ss_pred CHHhhhhhhhHHHHHHHHHHHHHh------cCCCCc-hhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 53211 2333444445555443 332111 245889999999887533 222 2233333334444333
Q ss_pred CCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhH
Q 001845 323 EPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMR 401 (1006)
Q Consensus 323 ~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~ 401 (1006)
=.+.-=.++..|..++..+.. .+-.....++.+|-.+. |- -...|+-.+|.=|..++......+.
T Consensus 652 I~EfiPYvfQlla~lve~~~~--~ip~~~~~l~~~lLsp~----------lW--~r~gNipalvrLl~aflk~g~~~~~ 716 (960)
T KOG1992|consen 652 IQEFIPYVFQLLAVLVEHSSG--TIPDSYSPLFPPLLSPN----------LW--KRSGNIPALVRLLQAFLKTGSQIVE 716 (960)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHhcCHH----------HH--hhcCCcHHHHHHHHHHHhcCchhhc
Confidence 234444577777777764421 12223334455554442 11 1357888888888888877554443
No 102
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.30 E-value=12 Score=43.97 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=144.0
Q ss_pred chHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHH
Q 001845 70 FGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQK 149 (1006)
Q Consensus 70 f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~ 149 (1006)
.+.-.++..+....-.+.+...... +...+.++ ++..+.+-|.+.++.+|.-|.+.|+.|+.+.....|.+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~a-l~~~~~~~----~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~---- 124 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALA-LLAQEDAL----DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEP---- 124 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHH-HhccCChH----HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHH----
Confidence 4566677777554444555443322 11222222 47888888999999999999999999999876665554
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCc
Q 001845 150 LIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQ 229 (1006)
Q Consensus 150 ~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ 229 (1006)
++. +.+|.||..++ +++...+.. -.+.+..+|+|.|+.|-.+|+..+-.+...+... .+..
T Consensus 125 ~L~--~~~p~vR~aal-~al~~r~~~--------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~--~L~~------ 185 (410)
T TIGR02270 125 LLA--ASEPPGRAIGL-AALGAHRHD--------PGPALEAALTHEDALVRAAALRALGELPRRLSES--TLRL------ 185 (410)
T ss_pred Hhc--CCChHHHHHHH-HHHHhhccC--------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccchH--HHHH------
Confidence 454 67999998777 555443322 2456788899999999999999998887543211 1111
Q ss_pred cccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHH
Q 001845 230 EYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMS 309 (1006)
Q Consensus 230 ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~ 309 (1006)
.....+|=...--+.-+..++. +... +.+.......+ . - .......++.+....
T Consensus 186 ---al~d~~~~VR~aA~~al~~lG~---~~A~----~~l~~~~~~~g----------~-~-~~~~l~~~lal~~~~---- 239 (410)
T TIGR02270 186 ---YLRDSDPEVRFAALEAGLLAGS---RLAW----GVCRRFQVLEG----------G-P-HRQRLLVLLAVAGGP---- 239 (410)
T ss_pred ---HHcCCCHHHHHHHHHHHHHcCC---HhHH----HHHHHHHhccC----------c-c-HHHHHHHHHHhCCch----
Confidence 1123344444444444544432 2221 22222221111 0 1 112222233332322
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcc
Q 001845 310 QCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVS 380 (1006)
Q Consensus 310 ~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~ 380 (1006)
.++..|..++. ++++|..++..+.++-.. .++. -++..+.|+. ++|.|-+-+-+|+--.
T Consensus 240 ~a~~~L~~ll~--d~~vr~~a~~AlG~lg~p----~av~----~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 240 DAQAWLRELLQ--AAATRREALRAVGLVGDV----EAAP----WCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred hHHHHHHHHhc--ChhhHHHHHHHHHHcCCc----chHH----HHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 35566666653 455888888888877653 2443 2345566655 8999888888887655
No 103
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.10 E-value=2.2 Score=43.34 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC-hhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhh
Q 001845 182 DGWADRMAQLLDERDLGVLTSSMSLLVALVSNN-HEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNT 260 (1006)
Q Consensus 182 ~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~-~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~ 260 (1006)
..|..++.++|.++++.-...++.++..+++.. ++.|... ..+|++. ++.+|+. .+.+..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~---------------~~~W~~~-Ll~~L~~---~~~~~~ 84 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH---------------GSQWLRA-LLSILEK---PDPPSV 84 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH---------------HHHHHHH-HHHHHcC---CCCHHH
Confidence 489999999999999999999999999999886 6655322 2778876 7888876 234455
Q ss_pred HHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcc
Q 001845 261 RRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMV 340 (1006)
Q Consensus 261 ~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~ 340 (1006)
.+.....+..++..+..-+ ....|.. . ..+...+..+..++.. ....-.+|+.|..+...
T Consensus 85 ~~~ai~~L~~l~~~~~~~p---------~l~Rei~--------t-p~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 85 LEAAIITLTRLFDLIRGKP---------TLTREIA--------T-PNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred HHHHHHHHHHHHHHhcCCC---------chHHHHh--------h-ccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 5555566666663322111 1122210 0 0133344445444432 55666899999999998
Q ss_pred CCcHHHHHHhHHHhhh
Q 001845 341 TDVHDIIKRHQAQIIT 356 (1006)
Q Consensus 341 ~~~~~~v~~~~~~i~~ 356 (1006)
+|. .+.+|..+|..
T Consensus 145 ~pt--t~rp~~~ki~~ 158 (165)
T PF08167_consen 145 HPT--TFRPFANKIES 158 (165)
T ss_pred CCc--cccchHHHHHH
Confidence 764 57777766543
No 104
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.95 E-value=31 Score=41.25 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHh--cC--Cc-HHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 001845 259 NTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMH--LD--AE-KEMMSQCIALLGKFIAVREPNIRYLGLEN 333 (1006)
Q Consensus 259 ~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~--l~--~~-~~l~~~~~~~L~~fL~s~~~nirylaL~~ 333 (1006)
+....+..+++.+|... | +..++ .=+..-+..++. +. ++ .++....+..+.+++.+++.++||-.|+.
T Consensus 42 ~f~~~flr~vn~IL~~K---k--~~si~--dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqi 114 (885)
T COG5218 42 EFSEEFLRVVNTILACK---K--NPSIP--DRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQI 114 (885)
T ss_pred hhHHHHHHHHHHhhccc---c--CCCcH--HHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 44555667778777321 1 11222 223333444444 22 22 46777888888888899999999999999
Q ss_pred HHHHHccCCcH--HHHHHhHHHhhhcccCcChhHHHHHHHHhhhc
Q 001845 334 MTRMLMVTDVH--DIIKRHQAQIITSLKDPDISIRRRALDLLYGM 376 (1006)
Q Consensus 334 L~~l~~~~~~~--~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l 376 (1006)
|..+...-... .....-..++...+.|....+|+.|+-.|...
T Consensus 115 la~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 115 LALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88888642211 12333445566667788888999888888765
No 105
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.81 E-value=68 Score=39.44 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=92.8
Q ss_pred CCchHHHHHHhccCCCcCchhhhHHHHHhhcccC----hhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhH--H
Q 001845 68 VDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNEN----HDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFA--E 141 (1006)
Q Consensus 68 v~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~----~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~--~ 141 (1006)
+...|.++++-..|++-..|.-+...+..+.+++ +++.-...-.+.+-+.|..|.+|--|+-+|+.+.+.+.- -
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 3466888888889988887777777777777753 556666666777778899999999999999998853321 1
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----------------------------hhCCCccccCcHHHHHHhhh
Q 001845 142 SLAPDVQKLIISSSCRPLVRKKAALCLLRLY-----------------------------RKNPDVVNVDGWADRMAQLL 192 (1006)
Q Consensus 142 ~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~-----------------------------~~~p~~v~~~~~~~~l~~lL 192 (1006)
.+......++. +|+++-||+.|.+++.-=- ++.-..+ +.....+..-|
T Consensus 163 ~v~n~l~~liq-nDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi--~krv~LlewgL 239 (892)
T KOG2025|consen 163 PVVNLLKDLIQ-NDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSI--DKRVLLLEWGL 239 (892)
T ss_pred cHHHHHHHHHh-cCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH--HHHHHHHHHhh
Confidence 23333444444 5899999999988764111 1111111 24455566667
Q ss_pred cCCChhHHHHHHHHHH
Q 001845 193 DERDLGVLTSSMSLLV 208 (1006)
Q Consensus 193 ~d~d~~V~~~a~~ll~ 208 (1006)
.|++..|-.|+.-++.
T Consensus 240 nDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 240 NDREFSVKGALVDAIL 255 (892)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 7777777777665544
No 106
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.69 E-value=1e+02 Score=41.28 Aligned_cols=289 Identities=17% Similarity=0.123 Sum_probs=162.8
Q ss_pred HHhHHHHhhhcCCCHHh----HHHHHHHHHHHHhcCCCChhHHHHH---HHHHHHHHhhCCCcccc---CcHHHHHHhhh
Q 001845 123 FQCLALTMVGNIGGREF----AESLAPDVQKLIISSSCRPLVRKKA---ALCLLRLYRKNPDVVNV---DGWADRMAQLL 192 (1006)
Q Consensus 123 ~~~lAL~~l~~i~~~e~----~~~l~~~V~~~l~s~~~~~~VRKkA---~lal~~l~~~~p~~v~~---~~~~~~l~~lL 192 (1006)
--||||+-|=+=+.-++ .+.+-..+++.+. |-..-||+.| +-++.|++-+-.|.... .++.+.+.-.|
T Consensus 1058 asclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD--DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1058 ASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD--DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence 45899998877666333 4555556666665 6778898865 55556665554444321 24555555555
Q ss_pred cCC-----ChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCcc-ccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHH
Q 001845 193 DER-----DLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQE-YTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFE 266 (1006)
Q Consensus 193 ~d~-----d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~e-y~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~ 266 (1006)
-|+ -..|-..++..+..+.++.+...+...++| -+. -+.++.-.|. .|.++..-. +....+.+ |
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~L--Ip~ll~~~s~lE~~----vLnYls~r~---~~~e~eal-D 1205 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKL--IPLLLNAYSELEPQ----VLNYLSLRL---INIETEAL-D 1205 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHH--HHHHHHHccccchH----HHHHHHHhh---hhhHHHHH-H
Confidence 443 345667788888889888876544444333 000 0001111111 111111000 11111111 2
Q ss_pred HHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHHHccCCc--
Q 001845 267 VLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAV-REPNIRYLGLENMTRMLMVTDV-- 343 (1006)
Q Consensus 267 ~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s-~~~nirylaL~~L~~l~~~~~~-- 343 (1006)
-++. +-+..+-++|+|+.++..-.. +.+...+..+..++.+ -..+.|--+-.-+..|+.+.+.
T Consensus 1206 t~R~-------------s~aksspmmeTi~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1206 TLRA-------------SAAKSSPMMETINKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred HHHH-------------hhhcCCcHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence 1211 112346789999988875433 4567778888887753 3556666555556666654321
Q ss_pred HHHHHHhHHHhhhcccCcChhHHHH---HHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChh
Q 001845 344 HDIIKRHQAQIITSLKDPDISIRRR---ALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLS 420 (1006)
Q Consensus 344 ~~~v~~~~~~i~~~L~d~D~sIr~~---aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~ 420 (1006)
....-+.....|.-++|.+.++||. |.-.|.+...++..+..+++++.-+-..+...+...+..|..++.....-..
T Consensus 1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lk 1351 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLK 1351 (1702)
T ss_pred CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHH
Confidence 0123345556677788999999986 7778889999999999999998755443333333333333334432233456
Q ss_pred hHHHHHHHHHHhcCCcc
Q 001845 421 WYVDVILQLIDKAGDFV 437 (1006)
Q Consensus 421 w~vd~ll~ll~~~g~~v 437 (1006)
-|-+.++.++-.+-.+.
T Consensus 1352 n~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1352 NYASAILPLIFLAMHEE 1368 (1702)
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 67778887777665443
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.45 E-value=18 Score=40.95 Aligned_cols=199 Identities=16% Similarity=0.119 Sum_probs=117.2
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHH
Q 001845 310 QCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEEL 389 (1006)
Q Consensus 310 ~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eL 389 (1006)
..+..+..++.+.+..+|+.+...+..+... .++ ..+..++.|.+..+|..+.+.|..+.++.-+..+++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~----~av----~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~-- 112 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE----EAV----PLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVE-- 112 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH----HHH----HHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHH--
Confidence 4677788888888899999998886555432 233 345678889999999999999998888875555444
Q ss_pred HHHhh-hcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 001845 390 LQYLS-TADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLD 468 (1006)
Q Consensus 390 l~yl~-~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~ 468 (1006)
++. +.+...|...+..++.+-.+-+ ++-++..+...-..+ .+...
T Consensus 113 --~l~~d~~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~---a~~~~----------------------- 158 (335)
T COG1413 113 --LLENDENEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGS---AAAAL----------------------- 158 (335)
T ss_pred --HHHcCCcHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhh---hhhhc-----------------------
Confidence 555 5778888888888887765432 555555554432111 11100
Q ss_pred CCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 001845 469 KPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFN 548 (1006)
Q Consensus 469 ~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~ 548 (1006)
+... ...-..++-.+|+.|+.- .+..+.+........+|.....++.++... . ..+...|.
T Consensus 159 ~~~~-~~~r~~a~~~l~~~~~~~----------~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~----~----~~~~~~l~ 219 (335)
T COG1413 159 DAAL-LDVRAAAAEALGELGDPE----------AIPLLIELLEDEDADVRRAAASALGQLGSE----N----VEAADLLV 219 (335)
T ss_pred cchH-HHHHHHHHHHHHHcCChh----------hhHHHHHHHhCchHHHHHHHHHHHHHhhcc----h----hhHHHHHH
Confidence 0000 011112345555555421 223333344444556777777777773322 1 23445555
Q ss_pred HhccCCChHHHHHHHHHHHHhcc
Q 001845 549 KYESCIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 549 ~~~~s~d~EvqqRA~eyl~Ll~~ 571 (1006)
....+.+.++|.++..-+.-...
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccCc
Confidence 55667777777766665555544
No 108
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.35 E-value=72 Score=39.21 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=83.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc--HHHHHHhHHHhhhcccCcChhHHHHHHHHhhhcc-
Q 001845 301 LDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDV--HDIIKRHQAQIITSLKDPDISIRRRALDLLYGMC- 377 (1006)
Q Consensus 301 l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~--~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~- 377 (1006)
++.+.+++......|.++..+++.++||=++..|.++...... -+.+..-...+...++|.-+.+|+.|+-.|..+-
T Consensus 76 ~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 76 LDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred cCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 4556788899999999999999999999999999999973211 1345566778888899999999999999998876
Q ss_pred CcccH-HHHHHHHHHHhhh-cChHhHHHHHHHHHHHHhhcC
Q 001845 378 DVSNA-KDIVEELLQYLST-ADFAMREELSLKAAILAEKFA 416 (1006)
Q Consensus 378 n~~Nv-~~Iv~eLl~yl~~-~d~~~~~~lv~~I~~laeky~ 416 (1006)
++.+= -.+++-+..-++. .++++|+.+..-|..=...+|
T Consensus 156 d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp 196 (892)
T KOG2025|consen 156 DPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLP 196 (892)
T ss_pred CCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccch
Confidence 33222 2355555555553 566888776655544333443
No 109
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=77 Score=39.47 Aligned_cols=332 Identities=18% Similarity=0.254 Sum_probs=182.4
Q ss_pred CCcHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhccCCCcC
Q 001845 6 MRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYP 85 (1006)
Q Consensus 6 mrgL~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~~S~~~~ 85 (1006)
.|||+.|=+..|..-....-+..| +.++.+ ..|+ +-.+|+.-.+++.+...| +.++.+- +. .
T Consensus 44 ~rgLKa~srkYR~~Vga~Gmk~li--------~vL~~D-~~D~-E~ik~~LdTl~il~~~dd----~~~v~dd---s~-q 105 (970)
T KOG0946|consen 44 VRGLKAFSRKYREEVGAQGMKPLI--------QVLQRD-YMDP-EIIKYALDTLLILTSHDD----SPEVMDD---ST-Q 105 (970)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHH--------HHHhhc-cCCH-HHHHHHHHHHHHHHhcCc----chhhccc---ch-h
Confidence 577888877777644333333333 344433 3333 467788887777775555 2222211 11 2
Q ss_pred chhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcC---CCHHhHHH------HHHHHHHHHhcCCC
Q 001845 86 EKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNI---GGREFAES------LAPDVQKLIISSSC 156 (1006)
Q Consensus 86 ~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i---~~~e~~~~------l~~~V~~~l~s~~~ 156 (1006)
--.+|--+...+... +|...++... +...|.++|-.|+..++++ ++.++-.. -+..+..+|. |+
T Consensus 106 sdd~g~~iae~fik~-qd~I~lll~~----~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~--Ds 178 (970)
T KOG0946|consen 106 SDDLGLWIAEQFIKN-QDNITLLLQS----LEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR--DS 178 (970)
T ss_pred hhHHHHHHHHHHHcC-chhHHHHHHH----HHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh--hh
Confidence 223444445555444 4444444443 3445778999998888875 34555333 3345566776 78
Q ss_pred ChhHHHHHHHHHHHHHhhCCCcccc---CcHHHHHHhhhcC---CCh-hHHHHHHHHHHHHHhcChh---hhh--ccCCC
Q 001845 157 RPLVRKKAALCLLRLYRKNPDVVNV---DGWADRMAQLLDE---RDL-GVLTSSMSLLVALVSNNHE---AYW--SCLPK 224 (1006)
Q Consensus 157 ~~~VRKkA~lal~~l~~~~p~~v~~---~~~~~~l~~lL~d---~d~-~V~~~a~~ll~~I~~~~~~---~~~--~~v~~ 224 (1006)
+..||--|++-+.-+-+-+|.+-+. ++..+++..++.+ .|- -|+--++.++..+.+++-. .|+ ..+|+
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 9999999999999999999864321 4667788888863 344 4788899999999988743 343 24555
Q ss_pred C-CCCccccccC-CCChhHHHH------HHHHHhcCCCCCChhh----------HHHHHHHHHHHHccCCcccccccCCC
Q 001845 225 C-DVPQEYTYYG-IPSPWLQVK------TMRALQYFPTVEDPNT----------RRSLFEVLQRILMGTDVVKNVNKNNA 286 (1006)
Q Consensus 225 l-~~~~ey~~~~-~~~pwlqvk------lLrlL~~~~~~~d~~~----------~~~l~~~l~~il~~~~~~~~~~~~n~ 286 (1006)
+ ++.+.+.|.. --.-|.--+ +|.+++.+.+++++.. ...+.++|..++..++.+
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp-------- 330 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP-------- 330 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc--------
Confidence 5 3334444443 334676444 4556665555433221 223556777777544322
Q ss_pred hhHHHHHHHHHHHhcC----------------CcHH-HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHH
Q 001845 287 SHAVLFEALALVMHLD----------------AEKE-MMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKR 349 (1006)
Q Consensus 287 ~~aVl~eai~~i~~l~----------------~~~~-l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~ 349 (1006)
.-|+-|++.++-+.- ..+. --...+..+.-+.+.-.+-+||.++.++......+.. .=.+
T Consensus 331 -~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~--gq~~ 407 (970)
T KOG0946|consen 331 -ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD--GQRK 407 (970)
T ss_pred -HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh--hHHH
Confidence 245555555554420 0000 0111122222233344567888888777777665431 1223
Q ss_pred hHHHhhhcc-cCcChhHHHHHHHHh
Q 001845 350 HQAQIITSL-KDPDISIRRRALDLL 373 (1006)
Q Consensus 350 ~~~~i~~~L-~d~D~sIr~~aL~lL 373 (1006)
...+++..- ++.+-++..-.|++.
T Consensus 408 ~l~tllp~~~nst~Nsl~ag~l~~~ 432 (970)
T KOG0946|consen 408 FLKTLLPSSTNSTSNSLSAGQLLLV 432 (970)
T ss_pred HHHHHhhhhccccccchhhhhHHHH
Confidence 344444333 234436665555543
No 110
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.28 E-value=23 Score=36.57 Aligned_cols=150 Identities=20% Similarity=0.265 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhh-C------------CCc--cccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCC
Q 001845 160 VRKKAALCLLRLYRK-N------------PDV--VNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPK 224 (1006)
Q Consensus 160 VRKkA~lal~~l~~~-~------------p~~--v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~ 224 (1006)
||-.|+.|+.-+.+. . ||. -........+.-++.|+++.|-.+|+.++..+..... .|.....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L~~Ae- 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK-PFLAQAE- 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH-HHHHHHH-
Confidence 677788888777777 3 343 0112334455567789999999999999999987643 3322211
Q ss_pred CCCCcccc-ccCCCChhHHHHHHHHHhcCCCCCChhhHHH---HHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHh
Q 001845 225 CDVPQEYT-YYGIPSPWLQVKTMRALQYFPTVEDPNTRRS---LFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMH 300 (1006)
Q Consensus 225 l~~~~ey~-~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~---l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~ 300 (1006)
|+. -.+-..|+.. ..... +...|-..+.. +++ ..++-++.|++..
T Consensus 80 -----~~~~~~~sFtslS~----------------tLa~~i~~lH~~Ll~~L~~--------E~~--~~~l~q~lK~la~ 128 (182)
T PF13251_consen 80 -----ESKGPSGSFTSLSS----------------TLASMIMELHRGLLLALQA--------EKS--PPVLTQLLKCLAV 128 (182)
T ss_pred -----hcCCCCCCcccHHH----------------HHHHHHHHHHHHHHHHHhc--------ccc--cHHHHHHHHHHHH
Confidence 010 0011222211 11222 22333333421 112 2566666666544
Q ss_pred c---CC----cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCC
Q 001845 301 L---DA----EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTD 342 (1006)
Q Consensus 301 l---~~----~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~ 342 (1006)
+ .+ ..+++...+..+..++.++|+|+|-.+|-++..+....+
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 3 22 467899999999999999999999999999999987653
No 111
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.25 E-value=53 Score=44.58 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcC----CCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCC
Q 001845 102 HDFLRLAINTVRNDIIGRNETFQCLALTMVGNI----GGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPD 177 (1006)
Q Consensus 102 ~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i----~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~ 177 (1006)
+++-.+..--+..+|.++||..||-|-.+++.+ +.+-+.-.+....++-+.| ...|+-|---.+++..++|....
T Consensus 871 e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas-~~d~i~R~ghslalg~lhkyvgs 949 (2067)
T KOG1822|consen 871 EEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLAS-ARDPITRTGHSLALGCLHKYVGS 949 (2067)
T ss_pred HHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHhccC
Confidence 456667777788899999999999888888774 3344444455445455553 35666666667777777766666
Q ss_pred ccccCcHHH---HHHhhhcCCCh-hHHHHHHHHHHHHHhcChhhh
Q 001845 178 VVNVDGWAD---RMAQLLDERDL-GVLTSSMSLLVALVSNNHEAY 218 (1006)
Q Consensus 178 ~v~~~~~~~---~l~~lL~d~d~-~V~~~a~~ll~~I~~~~~~~~ 218 (1006)
....+++.. .+..+-.|+++ -|...++..+..|.......|
T Consensus 950 ~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~ 994 (2067)
T KOG1822|consen 950 IGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF 994 (2067)
T ss_pred CCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee
Confidence 554344444 56666667555 788888888888775553333
No 112
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.22 E-value=1.4 Score=46.49 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=97.3
Q ss_pred HHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCCh--hHHhHHHHhhhcCCCHHhHHHHHHHHHH
Q 001845 72 HMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNE--TFQCLALTMVGNIGGREFAESLAPDVQK 149 (1006)
Q Consensus 72 ~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~--~~~~lAL~~l~~i~~~e~~~~l~~~V~~ 149 (1006)
.-.+-.|..+..+++|.+|++.+........+- .+..+.+-+..-+. ..=+++-+.++.+.... +.+.+.+.+
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~ 127 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEK 127 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 445566889999999999999887655442221 34455555554332 33445556666653322 567777888
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccC
Q 001845 150 LIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL 222 (1006)
Q Consensus 150 ~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v 222 (1006)
-+. +.++++|+.|++++++.++. +.. +.+...+..++.|.+..|..+.--+|.++...+|+....++
T Consensus 128 W~~--s~~~w~rR~~~v~~~~~~~~--~~~--~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 128 WAK--SDNEWVRRAAIVMLLRYIRK--EDF--DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp HHH--CSSHHHHHHHHHCTTTHGGG--CHH--HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHh--CCcHHHHHHHHHHHHHHHHh--cCH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 887 57999999999999998877 333 36677888888999999999999999999999987644443
No 113
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=1e+02 Score=40.08 Aligned_cols=464 Identities=14% Similarity=0.095 Sum_probs=229.1
Q ss_pred hhhHHHHHhhcccChhHHHHHHHHHHhhcCCC---ChhHHhHHHHhhhcCCCHHhHHH----HHHHHHHHHhcCCCChhH
Q 001845 88 QVGYIVTSCLLNENHDFLRLAINTVRNDIIGR---NETFQCLALTMVGNIGGREFAES----LAPDVQKLIISSSCRPLV 160 (1006)
Q Consensus 88 rlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~---n~~~~~lAL~~l~~i~~~e~~~~----l~~~V~~~l~s~~~~~~V 160 (1006)
++--++++++...++|++--++|++..=+... .+...+-++..+=++.-....+. +.-.-.+|= .++.|+.
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G--~~s~~~l 389 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCG--ELSGPEL 389 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhh--hhcCHHH
Confidence 34445666666677888777788776655432 22333333555555554333322 222222222 2677777
Q ss_pred HHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh-hh-----------------h-cc
Q 001845 161 RKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE-AY-----------------W-SC 221 (1006)
Q Consensus 161 RKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~-~~-----------------~-~~ 221 (1006)
||. +.. +-..|..||....-++-+-|-..+.---|-.++++++|=.....++.. .| . .+
T Consensus 390 ~~~-L~~-l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~i 467 (1176)
T KOG1248|consen 390 TKT-LEG-LCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYI 467 (1176)
T ss_pred HHH-HHH-HHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHHHHHHH
Confidence 663 322 233456666553223333444444444455555555544322222211 11 0 01
Q ss_pred CCCC-CC---CccccccCCCC---hhHHHHHHHHHhcCCCC-CChhhH-HHHHHHHHHHHccCCcccccccCCChhHHHH
Q 001845 222 LPKC-DV---PQEYTYYGIPS---PWLQVKTMRALQYFPTV-EDPNTR-RSLFEVLQRILMGTDVVKNVNKNNASHAVLF 292 (1006)
Q Consensus 222 v~~l-~~---~~ey~~~~~~~---pwlqvklLrlL~~~~~~-~d~~~~-~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~ 292 (1006)
+|.. .+ ..+..-.+..- .-++..|.++|-.||.. -|.+.+ ..+..++-..+ +.+-..+.+++
T Consensus 468 vpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al---------~~~~elr~~Ic 538 (1176)
T KOG1248|consen 468 VPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAAL---------LKRPELRETIC 538 (1176)
T ss_pred HHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHH---------hcchHhHHHHH
Confidence 1111 00 00000000111 13555666777666643 243331 11222222222 12223568888
Q ss_pred HHHHHHHhcCCc--------HHHHHHHHHHHHHhhc---CCCCchhH------HHHHHHH-HHHccCCcHHHHHHhHHHh
Q 001845 293 EALALVMHLDAE--------KEMMSQCIALLGKFIA---VREPNIRY------LGLENMT-RMLMVTDVHDIIKRHQAQI 354 (1006)
Q Consensus 293 eai~~i~~l~~~--------~~l~~~~~~~L~~fL~---s~~~niry------laL~~L~-~l~~~~~~~~~v~~~~~~i 354 (1006)
.+++.++.-..+ ..+-+.+.+.|.++.. ...++-|| -.|..+. ......+. +.+-...+.+
T Consensus 539 ~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~-dv~~~l~~s~ 617 (1176)
T KOG1248|consen 539 NSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPT-DVVGSLKDSA 617 (1176)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHH
Confidence 888888875411 1123345566666553 23333322 2233332 22222221 3444555565
Q ss_pred hhcccCcChhHHHH----HHHHhhhcc---CcccHHHHHHHHHHHhhhc-ChHhHHHHHHHHHHHHhhcCC---ChhhHH
Q 001845 355 ITSLKDPDISIRRR----ALDLLYGMC---DVSNAKDIVEELLQYLSTA-DFAMREELSLKAAILAEKFAP---DLSWYV 423 (1006)
Q Consensus 355 ~~~L~d~D~sIr~~----aL~lL~~l~---n~~Nv~~Iv~eLl~yl~~~-d~~~~~~lv~~I~~laeky~~---~~~w~v 423 (1006)
-....+.|.+++.. -||++..++ +++++..+. ++..+.... +..++...-.-+..+... ++ -..-.+
T Consensus 618 ~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i 695 (1176)
T KOG1248|consen 618 GELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRI 695 (1176)
T ss_pred HhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHH
Confidence 55556776676654 356666665 677777776 555666554 666666655555555443 11 112344
Q ss_pred HHHHHHHHhc----CCcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHhhcCCchh-hHHHHHHHhhhc------ccc
Q 001845 424 DVILQLIDKA----GDFVSDDIWFRVVQFVTNNE----DLQPYAAAKAREYLDKPAIH-ETMVKVSAYLLG------EYS 488 (1006)
Q Consensus 424 d~ll~ll~~~----g~~v~~ei~~~i~~ii~~~~----~l~~~a~~~l~~~L~~~~~~-e~l~k~~~wilG------Eyg 488 (1006)
+.+.+.|..+ ......+-...+..|+...+ ++....+..++=.+++.+.+ ....-.+++.+| ++|
T Consensus 696 ~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g 775 (1176)
T KOG1248|consen 696 DDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG 775 (1176)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc
Confidence 4444444443 22333333344444444444 44444444444444443322 111112455566 222
Q ss_pred ccccCCC-CCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 001845 489 HLLARRP-GCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPA-DPELQNQIWAIFNKYESCIEVEIQQRAVEYF 566 (1006)
Q Consensus 489 ~~i~~~~-~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~-~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl 566 (1006)
+ + | .-...+++..|+..+...+...++.-|.++.-++..+.+. +.+.-..++.....|..+...|++.-|.-+.
T Consensus 776 ~---e-~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fi 851 (1176)
T KOG1248|consen 776 N---E-PASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFI 851 (1176)
T ss_pred c---c-chHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 1 1 0112466777777777777777777677777777665442 3456677888888899999999999998887
Q ss_pred HHhcc
Q 001845 567 ALSRK 571 (1006)
Q Consensus 567 ~Ll~~ 571 (1006)
+.+-.
T Consensus 852 kvlv~ 856 (1176)
T KOG1248|consen 852 KVLVY 856 (1176)
T ss_pred HHHHH
Confidence 77644
No 114
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=87.46 E-value=78 Score=38.58 Aligned_cols=218 Identities=15% Similarity=0.234 Sum_probs=124.0
Q ss_pred hcCCCChhHHhHHHHhhhcCCC----------HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC----CCccc
Q 001845 115 DIIGRNETFQCLALTMVGNIGG----------REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKN----PDVVN 180 (1006)
Q Consensus 115 DL~s~n~~~~~lAL~~l~~i~~----------~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~----p~~v~ 180 (1006)
.++...|.+|.++|+-...... .++.+.-...+.-++ +++++.-++.+|++|+..+-|.- -. ..
T Consensus 339 sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~-~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~ 416 (678)
T KOG1293|consen 339 SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL-PPIKDHDFVAAALLCLKSFSRSVSALRTG-LK 416 (678)
T ss_pred HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc-cccccHHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 4566777778877775543221 222333333333333 35677778888888876544332 12 22
Q ss_pred cCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhh
Q 001845 181 VDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNT 260 (1006)
Q Consensus 181 ~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~ 260 (1006)
..+.++.+.++|.|++.+|..+++.+++.++-+ | . +.
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVme-----------------f---------------------s---~~-- 453 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVME-----------------F---------------------S---NL-- 453 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh-----------------c---------------------c---cH--
Confidence 235677777777777777777777777654421 1 0 10
Q ss_pred HHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcc
Q 001845 261 RRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMV 340 (1006)
Q Consensus 261 ~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~ 340 (1006)
.++ .+ ....++.|..++.+.++|.|-.++..|.++.-.
T Consensus 454 ksk-------fl-----------------------------------~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 454 KSK-------FL-----------------------------------RNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred HHH-------HH-----------------------------------HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 000 11 122345566667777788888888888877765
Q ss_pred CCcHH---HHHHhH-HHhhhcccCcChhHHHHHHHHhhhccCc--ccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhh
Q 001845 341 TDVHD---IIKRHQ-AQIITSLKDPDISIRRRALDLLYGMCDV--SNAKDIVEELLQYLSTADFAMREELSLKAAILAEK 414 (1006)
Q Consensus 341 ~~~~~---~v~~~~-~~i~~~L~d~D~sIr~~aL~lL~~l~n~--~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laek 414 (1006)
.+... ..++.- ..|....+|+|..|.-..+.+|-.++.. +.++-++++.- ++..+|...- |
T Consensus 492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~------------~~ld~i~l~l-k 558 (678)
T KOG1293|consen 492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK------------DVLDKIDLQL-K 558 (678)
T ss_pred chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh------------HHHHHHHHHH-h
Confidence 43211 111222 2334456799999999999999998766 55555544332 2334444333 6
Q ss_pred cCCChhhHHHHHHHHHHh
Q 001845 415 FAPDLSWYVDVILQLIDK 432 (1006)
Q Consensus 415 y~~~~~w~vd~ll~ll~~ 432 (1006)
+++....-+..+...+..
T Consensus 559 ~a~~~pi~ie~~~~~~~l 576 (678)
T KOG1293|consen 559 IAIGSPILIEFLAKKMRL 576 (678)
T ss_pred hccCCceehhhHHHHHHh
Confidence 666666555555554444
No 115
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.11 E-value=32 Score=38.84 Aligned_cols=333 Identities=15% Similarity=0.158 Sum_probs=179.5
Q ss_pred CCCchHHHHHH----hccCCCcCchhhhHHHHHhhcccC-hhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC----H
Q 001845 67 DVDFGHMEAVS----LISAPKYPEKQVGYIVTSCLLNEN-HDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGG----R 137 (1006)
Q Consensus 67 dv~f~~~~vi~----L~~S~~~~~KrlgYL~l~~l~~~~-~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~----~ 137 (1006)
.++|+--+-++ |--|.+....|=.||+........ -++..=+.-.++-=++|.++.++|.|=-.+||+.. .
T Consensus 40 ~i~fyS~~plraltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk 119 (550)
T KOG4224|consen 40 AISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENK 119 (550)
T ss_pred cccccCCCccchheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCc
Confidence 35665444333 444566677888888876654431 23333445556666889999999999999997653 2
Q ss_pred HhH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc--CcHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 001845 138 EFA---ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV--DGWADRMAQLLDERDLGVLTSSMSLLVALVS 212 (1006)
Q Consensus 138 e~~---~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~--~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~ 212 (1006)
-++ .-+.+-+.+.+. ....||..|+-|+..+-..+...++. ..-...+.+|-+.+|.+|...++..+..+-.
T Consensus 120 ~liv~l~Gl~~Li~qmmt---d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh 196 (550)
T KOG4224|consen 120 GLIVSLLGLDLLILQMMT---DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH 196 (550)
T ss_pred eEEEeccChHHHHHHhcC---CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh
Confidence 222 223345556553 46679999999999988775443321 2333444556678999999998888877653
Q ss_pred cChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHH----HHHHHHccCCcccccccCCChh
Q 001845 213 NNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFE----VLQRILMGTDVVKNVNKNNASH 288 (1006)
Q Consensus 213 ~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~----~l~~il~~~~~~~~~~~~n~~~ 288 (1006)
.. +.-+.++..-.+|.=....+..++=.|-++-.-+..... |...++.|.+ ++..++.-.|. .+.
T Consensus 197 s~-EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV--d~~~Rk~Laqaep~lv~~Lv~Lmd~--------~s~ 265 (550)
T KOG4224|consen 197 SR-ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV--DRRARKILAQAEPKLVPALVDLMDD--------GSD 265 (550)
T ss_pred hh-hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh--hHHHHHHHHhcccchHHHHHHHHhC--------CCh
Confidence 21 111112211000000011223344455555444444332 2222222111 11111111111 122
Q ss_pred HHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHH--HhHHHhhhccc-C
Q 001845 289 AVLFEALALVMHLDAEKEMMS-----QCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK--RHQAQIITSLK-D 360 (1006)
Q Consensus 289 aVl~eai~~i~~l~~~~~l~~-----~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~--~~~~~i~~~L~-d 360 (1006)
-|-.+|...+-.+....++.. ..+..|.++|.+..--.-....-++..|.-+....-.+. -+..-++.+|+ -
T Consensus 266 kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~ 345 (550)
T KOG4224|consen 266 KVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG 345 (550)
T ss_pred HHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC
Confidence 455566666655555443322 334556777754332222222223322322211000010 12222344454 3
Q ss_pred cChhHHHHHHHHhhhcc--CcccHHHHH-----HHHHHHhhhcChHhHHHHHHHHHHHHh
Q 001845 361 PDISIRRRALDLLYGMC--DVSNAKDIV-----EELLQYLSTADFAMREELSLKAAILAE 413 (1006)
Q Consensus 361 ~D~sIr~~aL~lL~~l~--n~~Nv~~Iv-----~eLl~yl~~~d~~~~~~lv~~I~~lae 413 (1006)
++..|+.-|.+.|-.++ .+.|+..|. ..|..-+.+...++++++...|+.|+.
T Consensus 346 dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 346 DNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred CchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 34569999999999987 578888875 477778888999999999999998873
No 116
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.06 E-value=3.4 Score=37.67 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=37.2
Q ss_pred HhhhcccCcChhHHHHHHHHhhhccCccc-----HHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcC
Q 001845 353 QIITSLKDPDISIRRRALDLLYGMCDVSN-----AKDIVEELLQYLSTADFAMREELSLKAAILAEKFA 416 (1006)
Q Consensus 353 ~i~~~L~d~D~sIr~~aL~lL~~l~n~~N-----v~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~ 416 (1006)
.++.-|.|+.+.||-.+|.+|-+++...+ +..|+.-++..+++.|..+--.+|..++.+|..|+
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 34445566666666666666666653333 45555555556666665555556666666666654
No 117
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=86.98 E-value=0.34 Score=39.31 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCcccc--CcHHHHHHhhhcCCChhHHHHHHHHHHH
Q 001845 158 PLVRKKAALCLLRLYRKNPDVVNV--DGWADRMAQLLDERDLGVLTSSMSLLVA 209 (1006)
Q Consensus 158 ~~VRKkA~lal~~l~~~~p~~v~~--~~~~~~l~~lL~d~d~~V~~~a~~ll~~ 209 (1006)
|.||..|+.++-.+....++.+.. .+..+.+..+|.|++..|-.+|+..|-.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 579999999998877676665531 3667888889999999999888877653
No 118
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.80 E-value=41 Score=37.00 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=106.3
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccc--cCcHHHHHHhhhc-CCChhHHHHHHHHHHHHHhc
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN--VDGWADRMAQLLD-ERDLGVLTSSMSLLVALVSN 213 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~--~~~~~~~l~~lL~-d~d~~V~~~a~~ll~~I~~~ 213 (1006)
++.+..+...+.+...-+.-..-+|.++.--+..++..+.+.+. .++++..+.++++ ++||..+.-+..++..+.+.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 45566666666654432233456788887777778888766552 1467888888885 89999999888888877764
Q ss_pred ChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCC------CCCh--hhHHHHHHHHHHHHccCCcccccccCC
Q 001845 214 NHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPT------VEDP--NTRRSLFEVLQRILMGTDVVKNVNKNN 285 (1006)
Q Consensus 214 ~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~------~~d~--~~~~~l~~~l~~il~~~~~~~~~~~~n 285 (1006)
.+- . + ..-.+.+++..|-| .+|| =+++.|..-|...+.+
T Consensus 155 ~~~------~---------------~-~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s----------- 201 (262)
T PF14500_consen 155 FDI------S---------------E-FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS----------- 201 (262)
T ss_pred ccc------c---------------h-hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-----------
Confidence 431 0 0 01122333333322 1233 1233444445444432
Q ss_pred ChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhccc
Q 001845 286 ASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK 359 (1006)
Q Consensus 286 ~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~ 359 (1006)
++..-..++..|..=|.|..++.|-=+|++|..-+...+ ...+.+|...|...|+
T Consensus 202 ------------------~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~-~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 202 ------------------TPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG-ADSLSPHWSTIWNALK 256 (262)
T ss_pred ------------------cHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
Confidence 223344566666666778888999889999888888775 4678899999887665
No 119
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.78 E-value=59 Score=36.50 Aligned_cols=272 Identities=14% Similarity=0.181 Sum_probs=154.7
Q ss_pred HHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhh
Q 001845 112 VRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQL 191 (1006)
Q Consensus 112 l~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~l 191 (1006)
+.+-|.+ +--.++|=|+++.=.+. .+.++... ++.. ..+.-+-||++-++.++..+.||+... +-...+.++
T Consensus 82 ll~~l~d--~ck~~~A~r~la~~~ga--~~~~it~~-~la~--~~~~~~l~ksL~al~~lt~~qpdl~da-~g~~vvv~l 153 (461)
T KOG4199|consen 82 LLEQLAD--ECKKSLAHRVLAGKNGA--HDALITLL-ELAE--SPNESVLKKSLEAINSLTHKQPDLFDA-EAMAVVLKL 153 (461)
T ss_pred HHHHHHH--HHhhhHHHHHHhccCCC--cchhhhHH-HHhh--CCchhHHHHHHHHHHHhhcCCcchhcc-ccHHHHHHH
Confidence 3344443 56677888887754331 12222222 2333 357788999999999999999999974 446777888
Q ss_pred hcC--CChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHh-cCCCCCChhhHHHHHHHH
Q 001845 192 LDE--RDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQ-YFPTVEDPNTRRSLFEVL 268 (1006)
Q Consensus 192 L~d--~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~-~~~~~~d~~~~~~l~~~l 268 (1006)
|.+ .+..|..+.+..+..-|-.+... ++. +.-.+++.++. -+......++.+.+++.+
T Consensus 154 L~~~~~~~dlt~~~~~~v~~Ac~~hE~n-rQ~------------------~m~~~il~Li~~~l~~~gk~~~VRel~~a~ 214 (461)
T KOG4199|consen 154 LALKVESEEVTLLTLQWLQKACIMHEVN-RQL------------------FMELKILELILQVLNREGKTRTVRELYDAI 214 (461)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhHHH-HHH------------------HHHhhHHHHHHHHHcccCccHHHHHHHHHH
Confidence 864 45566666666655544332111 111 12234444444 222222234556677888
Q ss_pred HHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHH
Q 001845 269 QRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK 348 (1006)
Q Consensus 269 ~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~ 348 (1006)
..++.- |...- -.+-.++-.+.|.+.. .+...+..|..|+ +|++---..-+|..|+-++..-..|.
T Consensus 215 r~l~~d-DDiRV------~fg~ah~hAr~ia~e~----~l~~L~Eal~A~~---dp~~L~~l~~tl~~lAVr~E~C~~I~ 280 (461)
T KOG4199|consen 215 RALLTD-DDIRV------VFGQAHGHARTIAKEG----ILTALTEALQAGI---DPDSLVSLSTTLKALAVRDEICKSIA 280 (461)
T ss_pred HHhcCC-Cceee------ecchhhHHHHHHHHhh----hHHHHHHHHHccC---CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 755532 22211 1233344455554433 2233344555554 36665555566666665542111222
Q ss_pred --HhHHHhhhcccC-cC---hhHHHHHHHHhhhccCcccH-HHHHH-----HHHHHhh--hcChHhHHHHHHHHHHHHhh
Q 001845 349 --RHQAQIITSLKD-PD---ISIRRRALDLLYGMCDVSNA-KDIVE-----ELLQYLS--TADFAMREELSLKAAILAEK 414 (1006)
Q Consensus 349 --~~~~~i~~~L~d-~D---~sIr~~aL~lL~~l~n~~Nv-~~Iv~-----eLl~yl~--~~d~~~~~~lv~~I~~laek 414 (1006)
--.++++.|+.| .+ ....+..|.+|-+++-.+.+ ..||+ .+..-+. ..|+.+.++....|+.+|.+
T Consensus 281 e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 281 ESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred HccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence 134567788876 23 34557889999999855544 55664 3343333 25788888999999999999
Q ss_pred cCCChhhHHH
Q 001845 415 FAPDLSWYVD 424 (1006)
Q Consensus 415 y~~~~~w~vd 424 (1006)
-|....-+++
T Consensus 361 ~pdhsa~~ie 370 (461)
T KOG4199|consen 361 SPDHSAKAIE 370 (461)
T ss_pred CcchHHHHHh
Confidence 8777666654
No 120
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=86.47 E-value=20 Score=39.97 Aligned_cols=247 Identities=17% Similarity=0.258 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCC---ccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhh
Q 001845 142 SLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPD---VVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAY 218 (1006)
Q Consensus 142 ~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~---~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~ 218 (1006)
-+.|...+.+.+ +.+....=.|+-++..+-.-..+ ++.+.+-.+.+.+||.+.+..|.-.++=+|-.|+-+.+. |
T Consensus 114 GvVpRfvefm~~-~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~ 191 (526)
T COG5064 114 GVVPRFVEFMDE-IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-C 191 (526)
T ss_pred cccHHHHHHHHh-cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-H
Confidence 344555556643 45667777888888877654433 233357789999999999999998888888888765532 2
Q ss_pred hccCCCCCCCccccccCCCChh--------HHHHHHHH----HhcCCC-----CCChhhHHHHHHHHHHHHccCCccccc
Q 001845 219 WSCLPKCDVPQEYTYYGIPSPW--------LQVKTMRA----LQYFPT-----VEDPNTRRSLFEVLQRILMGTDVVKNV 281 (1006)
Q Consensus 219 ~~~v~~l~~~~ey~~~~~~~pw--------lqvklLrl----L~~~~~-----~~d~~~~~~l~~~l~~il~~~~~~~~~ 281 (1006)
+..+-.. |...|. ..++++|- |..+++ ++...+++. ..+|.+++...|
T Consensus 192 RD~vL~~---------galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa-lpiL~KLiys~D----- 256 (526)
T COG5064 192 RDYVLQC---------GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA-LPILAKLIYSRD----- 256 (526)
T ss_pred HHHHHhc---------CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH-HHHHHHHHhhcC-----
Confidence 2211000 111111 12233332 222332 222334443 477777774432
Q ss_pred ccCCChhHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcH-HHHH--HhHH
Q 001845 282 NKNNASHAVLFEALALVMHLDA-EKEMMS-----QCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVH-DIIK--RHQA 352 (1006)
Q Consensus 282 ~~~n~~~aVl~eai~~i~~l~~-~~~l~~-----~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~-~~v~--~~~~ 352 (1006)
.-|+..|.=.+..+.. +.+-+. .+...|..+|++.+.+++--+|+++-.++.-++.. +.+- -...
T Consensus 257 ------~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 257 ------PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred ------HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH
Confidence 2566666666666543 222222 23355777888999999999999999888754321 1111 1223
Q ss_pred HhhhcccCcChhHHHHHHHHhhhccCcccHH---HHH-----HHHHHHhhhcChHhHHHHHHHHHHHH
Q 001845 353 QIITSLKDPDISIRRRALDLLYGMCDVSNAK---DIV-----EELLQYLSTADFAMREELSLKAAILA 412 (1006)
Q Consensus 353 ~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~---~Iv-----~eLl~yl~~~d~~~~~~lv~~I~~la 412 (1006)
.+-.+|.++-.-||+.|-=.+..++ ..|.+ .++ .-|.+-+..+++.+|.|++=+|..+.
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334567777789999988888763 44444 333 34666777788899999988887654
No 121
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.16 E-value=8.8 Score=42.98 Aligned_cols=167 Identities=18% Similarity=0.135 Sum_probs=80.4
Q ss_pred hhhcccCcChhHHHHHHHHhh--hccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 001845 354 IITSLKDPDISIRRRALDLLY--GMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLID 431 (1006)
Q Consensus 354 i~~~L~d~D~sIr~~aL~lL~--~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~ 431 (1006)
|..++..+|..||.++++-|- .|.|++.+.+-+.-+...+...+..++..++..|..+...|....-+.-..
T Consensus 32 I~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~------ 105 (298)
T PF12719_consen 32 ILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD------ 105 (298)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc------
Confidence 345566666677777776543 444676666666666666655666777777777776666664221110000
Q ss_pred hcCCcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHhhcCCchhh--HHHHHHHhhhccccc-cccCCCCCChHHHHHHHH
Q 001845 432 KAGDFVSDDIWFRVVQFVTN-NEDLQPYAAAKAREYLDKPAIHE--TMVKVSAYLLGEYSH-LLARRPGCSPKEIFSIIH 507 (1006)
Q Consensus 432 ~~g~~v~~ei~~~i~~ii~~-~~~l~~~a~~~l~~~L~~~~~~e--~l~k~~~wilGEyg~-~i~~~~~~~~~~~~~~l~ 507 (1006)
...+.-...+...+.+.+.+ +++++..+++-+++++-...... .++ ..++--|-+ ...++. .....+.++.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL---~~Lll~yF~p~t~~~~--~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVL---SRLLLLYFNPSTEDNQ--RLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHH---HHHHHHHcCcccCCcH--HHHHHHHHHH
Confidence 00001122223333333222 34566666666666553322222 222 122222322 221111 1234455666
Q ss_pred hhCCCCChhHHHHHHHHHHHHHhh
Q 001845 508 EKLPTVSMSTVAILLSTYAKILMH 531 (1006)
Q Consensus 508 ~~~~~~s~~tr~~iLta~~Kl~~~ 531 (1006)
+.|...+..-|..+..++.-.+-.
T Consensus 181 p~y~~s~~~~Q~~l~~~f~~~l~~ 204 (298)
T PF12719_consen 181 PVYASSSPENQERLAEAFLPTLRT 204 (298)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 667767766666555555554333
No 122
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=85.68 E-value=54 Score=41.36 Aligned_cols=255 Identities=20% Similarity=0.114 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC--CccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh--
Q 001845 141 ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP--DVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE-- 216 (1006)
Q Consensus 141 ~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p--~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~-- 216 (1006)
..+.|.++.++. +.++.||...+.-..-+.-..| ..+ +.+.+.....++|.++.|..+..-.+..+...+..
T Consensus 397 ~~ilp~~~~lv~--d~~~~vr~a~a~~~~~~~p~~~k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 397 SSILPEVQVLVL--DNALHVRSALASVITGLSPILPKERTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred hhhhHHHHHHHh--cccchHHHHHhccccccCccCCcCcCc--cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc
Confidence 344588888776 6899999998887766555444 333 46778888899999999999887444333322211
Q ss_pred --hh-hccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCC----CC-hhhHHHHHHHHHHHHccCCcccccccCCChh
Q 001845 217 --AY-WSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTV----ED-PNTRRSLFEVLQRILMGTDVVKNVNKNNASH 288 (1006)
Q Consensus 217 --~~-~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~----~d-~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~ 288 (1006)
.. ...+|.+ +-.+||..-++-.-+..|.+. .. .-+.+++...+...+.+ ++. ....
T Consensus 473 ~~~~s~slLp~i---------~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d-----~v~--~Ir~ 536 (759)
T KOG0211|consen 473 ISTVSNSLLPAI---------VELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPD-----HVY--SIRE 536 (759)
T ss_pred chhhhhhhhhhh---------hhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhh-----hHH--HHHH
Confidence 11 1122222 122444333322222222111 00 00111122222222210 000 0011
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHH-HhhhcccCcChhHHH
Q 001845 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQA-QIITSLKDPDISIRR 367 (1006)
Q Consensus 289 aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~-~i~~~L~d~D~sIr~ 367 (1006)
++..-...++...+ ..-.....+..+..+.....-=.|...+.++..|+..-+. +...++.. .+....+|+..-||.
T Consensus 537 ~aa~~l~~l~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-ei~~~~Llp~~~~l~~D~vanVR~ 614 (759)
T KOG0211|consen 537 AAARNLPALVETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-EITCEDLLPVFLDLVKDPVANVRI 614 (759)
T ss_pred HHHHHhHHHHHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-HHHHHHHhHHHHHhccCCchhhhh
Confidence 22222222233333 2222232333333333233355788889998888876543 34555554 445566788889999
Q ss_pred HHHHHhhhc---cCcccHHHHHHHHHHHhhhc---ChHhHHHHHHHHHHHHhhcCC
Q 001845 368 RALDLLYGM---CDVSNAKDIVEELLQYLSTA---DFAMREELSLKAAILAEKFAP 417 (1006)
Q Consensus 368 ~aL~lL~~l---~n~~Nv~~Iv~eLl~yl~~~---d~~~~~~lv~~I~~laeky~~ 417 (1006)
.++..|..+ -+.+-.+..|..++..+... |..++.+.......++.+|..
T Consensus 615 nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 615 NVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 998888765 47777788888888888752 444555555555556667653
No 123
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=85.00 E-value=5.2 Score=39.16 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=48.8
Q ss_pred ecceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCCcccCCCCeeEEEEEEEecC
Q 001845 761 RGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLR 819 (1006)
Q Consensus 761 ~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~~tI~p~~q~q~~v~v~~~~ 819 (1006)
+...+.+.+.+.|++...|.|+.+++..-..+++...|.+-+|.|++.......+++..
T Consensus 67 ~q~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsS 125 (140)
T PF07718_consen 67 HQYDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSS 125 (140)
T ss_pred EeeeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEe
Confidence 44569999999999999999999999987789987677777899998877666666643
No 124
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.28 E-value=78 Score=36.69 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=85.0
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHH--hhhccc-Cc-ChhHHHHHHHHhhhccCccc-H----
Q 001845 312 IALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQ--IITSLK-DP-DISIRRRALDLLYGMCDVSN-A---- 382 (1006)
Q Consensus 312 ~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~--i~~~L~-d~-D~sIr~~aL~lL~~l~n~~N-v---- 382 (1006)
...++.++.+.+..+|-.|++.+-.++........+.+..-+ |..||. |. ...=|..||.+.-++.+-.+ +
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~ 106 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP 106 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC
Confidence 334443444555889999999887777754333333332222 234443 22 23346678988887776532 2
Q ss_pred HHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhh--HHHHHHHHHHhcCCc-chHHHHHHHHHHHhcCCCcHHH
Q 001845 383 KDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSW--YVDVILQLIDKAGDF-VSDDIWFRVVQFVTNNEDLQPY 458 (1006)
Q Consensus 383 ~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w--~vd~ll~ll~~~g~~-v~~ei~~~i~~ii~~~~~l~~~ 458 (1006)
..|++-+..-.+..|+.+|.-.+..++.++...|.-.-| =+.++++.+.. |.+ +.+.+...+..++ ++|+.|.|
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lL-d~p~tR~y 183 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID-GSFSISESLLDTLLYLL-DSPRTRKY 183 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHh-CCcchhhh
Confidence 678888888888888889998888888888765521111 12333333333 322 5555556666554 55666654
No 125
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.56 E-value=2.2 Score=53.07 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=93.8
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHhccCC----CcCchhhhHHHHHhhccc---C------
Q 001845 36 IRTRFKNEKGLSPYEKKKYVWKMLYIYMLG-YDVDFGHMEAVSLISAP----KYPEKQVGYIVTSCLLNE---N------ 101 (1006)
Q Consensus 36 Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG-~dv~f~~~~vi~L~~S~----~~~~KrlgYL~l~~l~~~---~------ 101 (1006)
|++.+.+. .+++.+ +..-+.++...- ++.....-++..|+.++ +...+.-+.|++..+.+. +
T Consensus 400 i~~~I~~~-~~~~~e---a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~ 475 (618)
T PF01347_consen 400 IKDLIKSK-KLTDDE---AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF 475 (618)
T ss_dssp HHHHHHTT--S-HHH---HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHcC-CCCHHH---HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence 33333443 454443 333344444444 44444555555666654 234566666666665542 1
Q ss_pred ---------hhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001845 102 ---------HDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLY 172 (1006)
Q Consensus 102 ---------~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~ 172 (1006)
.++.--..+.+.+-....++..+-++|++|||++.++.++.+.+.+..-- .....+|..|+.|+.|+-
T Consensus 476 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~---~~~~~~R~~Ai~Alr~~~ 552 (618)
T PF01347_consen 476 CDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE---EVPHFIRVAAIQALRRLA 552 (618)
T ss_dssp -----SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS----S-HHHHHHHHHTTTTGG
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc---ccchHHHHHHHHHHHHHh
Confidence 13445555666666667788899999999999999887777766554321 357899999999999887
Q ss_pred hhCCCccccCcHHHHHHhhhcC--CChhHHHHHHHHHHH
Q 001845 173 RKNPDVVNVDGWADRMAQLLDE--RDLGVLTSSMSLLVA 209 (1006)
Q Consensus 173 ~~~p~~v~~~~~~~~l~~lL~d--~d~~V~~~a~~ll~~ 209 (1006)
..+|+.+. +.+..++.| .++-|-.+|+.+|..
T Consensus 553 ~~~~~~v~-----~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 553 KHCPEKVR-----EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp GT-HHHHH-----HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hcCcHHHH-----HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 77776663 455566643 567788888766653
No 126
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.23 E-value=5.5 Score=36.31 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=51.8
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhhCC-CccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh
Q 001845 147 VQKLIISSSCRPLVRKKAALCLLRLYRKNP-DVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE 216 (1006)
Q Consensus 147 V~~~l~s~~~~~~VRKkA~lal~~l~~~~p-~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~ 216 (1006)
+.+.+. |..+-||--++.-+.++++... .....+.....+...|.|.|+-|-++|+..+..++...|+
T Consensus 8 al~~L~--dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 8 ALSDLN--DPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHcc--CCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 334444 4567788888888888887776 4443346667777888999999999999999999988876
No 127
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.20 E-value=1.4e+02 Score=39.86 Aligned_cols=76 Identities=11% Similarity=0.247 Sum_probs=47.4
Q ss_pred HHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCCh
Q 001845 477 VKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEV 556 (1006)
Q Consensus 477 ~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~ 556 (1006)
++..+-+++++++.+.+ +-.+++..+..+|.+-+.++|..++...--.++. .|+....+...+.....+.|+
T Consensus 280 ~~lvg~~~~~~~~~l~~----~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~----~~~~~~~~~~~~~l~~~~~D~ 351 (1266)
T KOG1525|consen 280 VKLVGRMFSDKDSQLSE----TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN----NPSIAKASTILLALRERDLDE 351 (1266)
T ss_pred HHHHHHHHhcchhhhcc----cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc----CchhhhHHHHHHHHHhhcCCh
Confidence 34456666777666652 1246677788888888888888887777665432 455555555555555556666
Q ss_pred HHHH
Q 001845 557 EIQQ 560 (1006)
Q Consensus 557 Evqq 560 (1006)
++|-
T Consensus 352 ~~ri 355 (1266)
T KOG1525|consen 352 DVRV 355 (1266)
T ss_pred hhhh
Confidence 6553
No 128
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=81.34 E-value=39 Score=41.53 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHH
Q 001845 290 VLFEALALVMHLDAEKEMMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRR 368 (1006)
Q Consensus 290 Vl~eai~~i~~l~~~~~l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~ 368 (1006)
++.-.+-.|-+-.+..+........|...++ +..-.+..+.++.+-.|..+-+..+.......-++.+++|.|+.|..+
T Consensus 329 ~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~ 408 (700)
T KOG2137|consen 329 IVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQEL 408 (700)
T ss_pred cccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHH
Confidence 3334444444433334445555666666665 444567778888888888766543344455566778899999999999
Q ss_pred HHHHhhhccCcccHHHHHHHHH----H-HhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001845 369 ALDLLYGMCDVSNAKDIVEELL----Q-YLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDK 432 (1006)
Q Consensus 369 aL~lL~~l~n~~Nv~~Iv~eLl----~-yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~ 432 (1006)
+|.++-...+.=-+..+-+-++ + ++.+.+..+|..++..++.++++ -|..-+++.++.+++.
T Consensus 409 ~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~--lD~~~v~d~~lpi~~~ 475 (700)
T KOG2137|consen 409 ALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR--LDKAAVLDELLPILKC 475 (700)
T ss_pred HHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHH
Confidence 9998875432222222222222 1 22234556666666666666632 2333455555554443
No 129
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.05 E-value=21 Score=35.16 Aligned_cols=98 Identities=22% Similarity=0.199 Sum_probs=67.6
Q ss_pred hccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCC---CHHh-----HHHHHHHHHH
Q 001845 78 LISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIG---GREF-----AESLAPDVQK 149 (1006)
Q Consensus 78 L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~---~~e~-----~~~l~~~V~~ 149 (1006)
..+....++-.-..+-++-..+.+++-.--++..|+|-|.++||.++-+||..+-.+. ++.+ ...+...+.+
T Consensus 13 ATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~ 92 (140)
T PF00790_consen 13 ATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK 92 (140)
T ss_dssp HT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred HhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH
Confidence 3444444555556677777788888888899999999999999999999988775432 2222 1346777888
Q ss_pred HHhcCCCChh--HHHHHHHHHHHHHhhC
Q 001845 150 LIISSSCRPL--VRKKAALCLLRLYRKN 175 (1006)
Q Consensus 150 ~l~s~~~~~~--VRKkA~lal~~l~~~~ 175 (1006)
++.++...+. ||+|++-.+......+
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 7776555555 9999887766555444
No 130
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.19 E-value=1e+02 Score=38.14 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=37.6
Q ss_pred HHHHHHHHH------HHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHH
Q 001845 289 AVLFEALAL------VMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDII 347 (1006)
Q Consensus 289 aVl~eai~~------i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v 347 (1006)
.+.||+-++ ++.-+.....+..+++.+.++.. +..-|.-.|+.+.+....-+.++.+
T Consensus 152 Gia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~--~~efR~~vlr~lv~~y~~~~~PDy~ 214 (929)
T KOG2062|consen 152 GIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVN--NREFRNKVLRLLVKTYLKLPSPDYF 214 (929)
T ss_pred hHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHccCCCCCee
Confidence 566666544 34444555667777777777764 5577888888888887765555444
No 131
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.19 E-value=2.5 Score=43.95 Aligned_cols=102 Identities=17% Similarity=0.223 Sum_probs=75.1
Q ss_pred HHHhhcCCCChhHHhHHHHhhhcCCCHHhH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHH
Q 001845 111 TVRNDIIGRNETFQCLALTMVGNIGGREFA--ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRM 188 (1006)
Q Consensus 111 sl~KDL~s~n~~~~~lAL~~l~~i~~~e~~--~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l 188 (1006)
.|.+-+.+++..+|-.|++++..+-...++ -...|.+.-+.. |.+++||++|.-.+..++.++|+.+. ..+.+-+
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~t--s~~~~ir~~A~~~l~~l~eK~~s~v~-~~~~~gi 88 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALET--SPNPSIRSRAYQLLKELHEKHESLVE-SRYSEGI 88 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhC--CCChHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 455567889999999999999998776665 355677777775 67999999999999999999999886 3555555
Q ss_pred Hhhh-------cCCChhH---HHHHHHHHHHHHhcCh
Q 001845 189 AQLL-------DERDLGV---LTSSMSLLVALVSNNH 215 (1006)
Q Consensus 189 ~~lL-------~d~d~~V---~~~a~~ll~~I~~~~~ 215 (1006)
.... .|..... ..+.+..++.+++.+.
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r 125 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNR 125 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhccc
Confidence 4322 2322222 6777788888887554
No 132
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.98 E-value=92 Score=33.54 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhc--------cc
Q 001845 289 AVLFEALALVMHLDAEK-EMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITS--------LK 359 (1006)
Q Consensus 289 aVl~eai~~i~~l~~~~-~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~--------L~ 359 (1006)
.+....++++-.+..+. .....+++.|..+........+|++++.+.++....+. .+ .+...++.. ..
T Consensus 16 ~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f-~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HF-PFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred HHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HH-HHHHHHHHHHHhhcccccC
Confidence 44444445544443333 55666777888877777777799999999999987653 12 233222222 22
Q ss_pred CcChh------HHHHHHHHhhhccCcccHHHHHHHHHHHh-hhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001845 360 DPDIS------IRRRALDLLYGMCDVSNAKDIVEELLQYL-STADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDK 432 (1006)
Q Consensus 360 d~D~s------Ir~~aL~lL~~l~n~~Nv~~Iv~eLl~yl-~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~ 432 (1006)
+.+.. ++.---++.. .+++....++..+...+ ...+...+.-.+..|..+++.=.-+..-.-+++.+-+
T Consensus 93 ~~~~~~~~~i~~a~s~~~ic~--~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l-- 168 (234)
T PF12530_consen 93 SKDEFWECLISIAASIRDICC--SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL-- 168 (234)
T ss_pred CCcchHHHHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc--
Confidence 22221 1111111211 26668899999999999 7788888888888899888544444443335565544
Q ss_pred cCCcchHHHHHHHHHHHhc----------CCCcHHHHHHHHHHhhcC
Q 001845 433 AGDFVSDDIWFRVVQFVTN----------NEDLQPYAAAKAREYLDK 469 (1006)
Q Consensus 433 ~g~~v~~ei~~~i~~ii~~----------~~~l~~~a~~~l~~~L~~ 469 (1006)
+......+...++.++.. ++.+...++..++++...
T Consensus 169 -~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~ 214 (234)
T PF12530_consen 169 -SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSS 214 (234)
T ss_pred -CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccc
Confidence 222344455544444332 344445566666666654
No 133
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=79.61 E-value=1.7e+02 Score=36.43 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=74.5
Q ss_pred HHhcCC-cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhc
Q 001845 298 VMHLDA-EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGM 376 (1006)
Q Consensus 298 i~~l~~-~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l 376 (1006)
+..+++ .+..+..++..|..++--.+-|+.-=.|..|..++...+ +.+++. |+.||...+ ..++++.+..
T Consensus 240 a~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~----veRF~p-iv~gl~~~e----~~~l~vacmq 310 (1102)
T KOG1924|consen 240 ARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP----VERFRP-IVEGLDFLE----KQQLQVACMQ 310 (1102)
T ss_pred HHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc----hhhhhh-HHHHHhccc----hHHHHHHHHH
Confidence 334444 233555566666666555556666666777777776543 443332 356665443 2334433321
Q ss_pred cCcccHHHHHHHHHHHhhhcChHh----HHHHHH-HHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Q 001845 377 CDVSNAKDIVEELLQYLSTADFAM----REELSL-KAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTN 451 (1006)
Q Consensus 377 ~n~~Nv~~Iv~eLl~yl~~~d~~~----~~~lv~-~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~ 451 (1006)
.++-|..-. .|-+| |.|+.+ .+-...++|-...+--+|+-++++..-+.--..+..+++-+|-.+
T Consensus 311 --------~INal~t~p--~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkvfdE~~e~Dl~el~~rledir~e 380 (1102)
T KOG1924|consen 311 --------FINALVTSP--SDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKVFDEHKEDDLEELSGRLEDIRAE 380 (1102)
T ss_pred --------HHHHhcCCH--HHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHHHhhhhhhhHHHHHhHHHhhhhh
Confidence 222221111 12233 333222 122223444444556677777777766544456667777666666
Q ss_pred CCCcHHHHHHHHHHhhcC
Q 001845 452 NEDLQPYAAAKAREYLDK 469 (1006)
Q Consensus 452 ~~~l~~~a~~~l~~~L~~ 469 (1006)
..++.+ +-..|+..+++
T Consensus 381 mDd~~~-~f~lL~n~vkd 397 (1102)
T KOG1924|consen 381 MDDANE-VFELLANTVKD 397 (1102)
T ss_pred hccHHH-HHHHHHHhhhh
Confidence 665533 33333344443
No 134
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=79.12 E-value=23 Score=36.73 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhc
Q 001845 145 PDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWS 220 (1006)
Q Consensus 145 ~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~ 220 (1006)
+.+.+-+. +.++++|+.|+.++++.++... .. +.+.+.+..++.|.+..|..+.--+|.++...+|+....
T Consensus 108 ~~~~~w~~--s~~~~~rR~~~~~~~~~~~~~~-~~--~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 108 DLLEEWAK--SENEWVRRAAIVLLLRLIKKET-DF--DLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHHhcc-cH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 45566665 5799999999999999998722 22 367788888899999999999999999999988875433
No 135
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=78.91 E-value=13 Score=37.44 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=67.0
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhhcC--CchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHH
Q 001845 445 VVQFVTNNEDLQPYAAAKAREYLDK--PAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILL 522 (1006)
Q Consensus 445 i~~ii~~~~~l~~~a~~~l~~~L~~--~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iL 522 (1006)
+..+...++..+..+++++.+.+-. .......+.+..+++-.+...+.+ ...-++.+.+.+...+..+-..++
T Consensus 42 L~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle-----~~~~l~~~ld~l~~lp~~~a~~ll 116 (158)
T PF14676_consen 42 LLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLE-----CSSKLKELLDYLSFLPGDVAIGLL 116 (158)
T ss_dssp HHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS------S-HHHHGGGGGTTTS-HHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHH-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444555666666666666665532 111123344445555555444443 123345556677778888888888
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHH
Q 001845 523 STYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAV 563 (1006)
Q Consensus 523 ta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~ 563 (1006)
.|+.=| ....+.+++.++.++++...+.+.+.|+=|.
T Consensus 117 ~Al~PL----i~~s~~lrd~lilvLRKamf~r~~~~R~~Av 153 (158)
T PF14676_consen 117 RALLPL----IKFSPSLRDSLILVLRKAMFSRELDARQMAV 153 (158)
T ss_dssp HHHHHH----HTT-HHHHHHHHHHHHHHTT-SSHHHHHHHH
T ss_pred HHHHHH----HhcCHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 888884 3345899999999999999999999998775
No 136
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=78.21 E-value=22 Score=43.51 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=71.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCC---CCc----------------
Q 001845 10 SVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYD---VDF---------------- 70 (1006)
Q Consensus 10 ~~fI~~ir~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~d---v~f---------------- 70 (1006)
..|...+|- ++.+|-+++...=+..++ .|-+ .+.+++.++.|+..+-.|.. +-.
T Consensus 257 ~~fLeel~l-ks~~eK~~Ff~~L~~~l~-~~pe-----~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~ 329 (690)
T KOG1243|consen 257 LLFLEELRL-KSVEEKQKFFSGLIDRLD-NFPE-----EIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQV 329 (690)
T ss_pred HHHHHhccc-CcHHHHHHHHHHHHHHHh-hhhH-----HHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcccccccc
Confidence 344455553 444444444433333233 3322 35678888888888777762 111
Q ss_pred -hHHHHHHhccCCCcCchhhhHHHHHhhcccC--hhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC
Q 001845 71 -GHMEAVSLISAPKYPEKQVGYIVTSCLLNEN--HDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGG 136 (1006)
Q Consensus 71 -~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~--~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~ 136 (1006)
....+++|+.++|-..|-+-.-++..|.+.= +.+---+-..+..-+.|+|+.+|..+|++|..+..
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 2234456777776666655555555555541 22333456677788999999999999999988654
No 137
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=78.09 E-value=2.2e+02 Score=36.90 Aligned_cols=409 Identities=14% Similarity=0.095 Sum_probs=192.2
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcC-CChhHHHHHHHHHHHHHhcC-
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE-RDLGVLTSSMSLLVALVSNN- 214 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d-~d~~V~~~a~~ll~~I~~~~- 214 (1006)
+|+.|.+..++...++ |.+..||-.||=.+.|+....|-.+- ++.+..+.++++- .+++.--.|+.++-+++..-
T Consensus 336 ~eivE~vie~Lls~l~--d~dt~VrWSaAKg~grvt~rlp~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALS--DTDTVVRWSAAKGLGRVTSRLPPELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHHhcc--CCcchhhHHHHHHHHHHHccCcHHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 5778888888888886 78889999999999999999984433 3566666666753 24555556777777777543
Q ss_pred --hhhhhccCCCC----CCCccccc-----------------------cCCCChhHHHHHHHHHhcCCCCCChh--hHHH
Q 001845 215 --HEAYWSCLPKC----DVPQEYTY-----------------------YGIPSPWLQVKTMRALQYFPTVEDPN--TRRS 263 (1006)
Q Consensus 215 --~~~~~~~v~~l----~~~~ey~~-----------------------~~~~~pwlqvklLrlL~~~~~~~d~~--~~~~ 263 (1006)
|..+...+|.+ .+...+-+ .....|++|--..-+|..-.- |++ .+..
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF--DrevncRRA 490 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF--DREVNCRRA 490 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc--CchhhHhHH
Confidence 33333333322 11000000 011245444333333332111 222 1221
Q ss_pred HHHHHHHHHccCCcc----cccccCCChhHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHh-hcCCCCchhHHHHHHH
Q 001845 264 LFEVLQRILMGTDVV----KNVNKNNASHAVLFEALALVMH----LDAEKEMMSQCIALLGKF-IAVREPNIRYLGLENM 334 (1006)
Q Consensus 264 l~~~l~~il~~~~~~----~~~~~~n~~~aVl~eai~~i~~----l~~~~~l~~~~~~~L~~f-L~s~~~nirylaL~~L 334 (1006)
-.-.++..+-..... .-+.+.| .+||.-- .++..+ +..-+.+++..++.|..- +.+=|..+|.++=.+|
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~d-y~sV~~r-sNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTID-YFSVTNR-SNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhcc-hhhhhhh-hhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 112222222110000 0001111 1111110 111111 111234555556665433 4566889999999999
Q ss_pred HHHHccCCcHHHHH-HhHHHhhhcccCcChhHHHH----HHHHhh---hcc--CcccHHHHHHHHHHHhhh-cChHh-H-
Q 001845 335 TRMLMVTDVHDIIK-RHQAQIITSLKDPDISIRRR----ALDLLY---GMC--DVSNAKDIVEELLQYLST-ADFAM-R- 401 (1006)
Q Consensus 335 ~~l~~~~~~~~~v~-~~~~~i~~~L~d~D~sIr~~----aL~lL~---~l~--n~~Nv~~Iv~eLl~yl~~-~d~~~-~- 401 (1006)
.+|....|. .+. -+...++.+.-..|...|-- +=+++. .+. ...-.+..|..+.+.+.. .|..+ |
T Consensus 569 ~~Ls~~~pk--~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg 646 (1133)
T KOG1943|consen 569 HKLSLTEPK--YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG 646 (1133)
T ss_pred HHHHHhhHH--hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc
Confidence 998886652 333 34455566655555554421 111111 111 222233344444333322 11111 1
Q ss_pred --HHHHHHHHHHHhhcCC-Ch--------hhHHHHHHHHHHhcCCcchHHHHHHHHHHHhc----CCCcHHHHHHHHHHh
Q 001845 402 --EELSLKAAILAEKFAP-DL--------SWYVDVILQLIDKAGDFVSDDIWFRVVQFVTN----NEDLQPYAAAKAREY 466 (1006)
Q Consensus 402 --~~lv~~I~~laeky~~-~~--------~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~----~~~l~~~a~~~l~~~ 466 (1006)
.-+...++...+++.- +. +-+-.++.+.++.. +.+.++++..+.+++.. ++..-...+.+++..
T Consensus 647 ~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~-n~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~ 725 (1133)
T KOG1943|consen 647 QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP-NQIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSR 725 (1133)
T ss_pred hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Confidence 1222333333444321 11 11122333444221 24566666666666543 333222355666777
Q ss_pred hcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCC-ChhHHHHHHHHHHHHHhhcC-----CCChhHH
Q 001845 467 LDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTV-SMSTVAILLSTYAKILMHTQ-----PADPELQ 540 (1006)
Q Consensus 467 L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~-s~~tr~~iLta~~Kl~~~~~-----~~~~e~~ 540 (1006)
+.++. .+...+..+-++|---..+-+.+ . -..+.+.+.+-++.- .++.|.+.+-+++++.-.+. ....+++
T Consensus 726 ~~~~~-~~~~r~g~~lal~~lp~~~i~~~-~-q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~ 802 (1133)
T KOG1943|consen 726 LTKCS-EERIRRGLILALGVLPSELIHRH-L-QEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFR 802 (1133)
T ss_pred hcCch-HHHHHHHHHHHHccCcHHhhchH-H-HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 76652 12222222333443221111100 0 011122233334433 77889888888888654422 2345677
Q ss_pred HHHHHHHHHhccCCChHH
Q 001845 541 NQIWAIFNKYESCIEVEI 558 (1006)
Q Consensus 541 ~~v~~vl~~~~~s~d~Ev 558 (1006)
+.+.+.++.|+.|..=||
T Consensus 803 e~LL~~lddYttd~rGDV 820 (1133)
T KOG1943|consen 803 ETLLNALDDYTTDSRGDV 820 (1133)
T ss_pred HHHHHHHhhcccccCccH
Confidence 888888888875544443
No 138
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=77.55 E-value=1.2e+02 Score=37.65 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=114.6
Q ss_pred CCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhh-------hhcc--CCCC
Q 001845 155 SCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEA-------YWSC--LPKC 225 (1006)
Q Consensus 155 ~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~-------~~~~--v~~l 225 (1006)
|.-+.||++|+-.++-|+..-|+.-. .+.-.+..-|.|++.-+..-|..+|..+...+|.. ...+ -|.+
T Consensus 315 D~L~~vk~raL~ti~~lL~~kPEqE~--~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~ 392 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKPEQEN--NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNV 392 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCc
Confidence 56789999999999999999998764 66777788889999999999999999999888741 1111 1221
Q ss_pred CCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHH----HHHHccCC--ccccc------ccCC--------
Q 001845 226 DVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVL----QRILMGTD--VVKNV------NKNN-------- 285 (1006)
Q Consensus 226 ~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l----~~il~~~~--~~~~~------~~~n-------- 285 (1006)
..-. .||.+ .=.-|++ +... +..+..+|+.+. ..++...+ ..+.. .+.|
T Consensus 393 ~~ra--~Yyav-~fLnQ~~-------Lshk-e~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~ 461 (988)
T KOG2038|consen 393 SERA--HYYAV-IFLNQMK-------LSHK-ESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEV 461 (988)
T ss_pred cccc--eeehh-hhhhhhH-------hccc-hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhh
Confidence 1111 13322 1112222 2222 444665555442 22222111 11000 0000
Q ss_pred ------ChhHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHH-HhHHH
Q 001845 286 ------ASHAVLFEALALVMH-----LDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK-RHQAQ 353 (1006)
Q Consensus 286 ------~~~aVl~eai~~i~~-----l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~-~~~~~ 353 (1006)
.-++=++.|+-+=++ -....+.+..=+..|=++..+.+.|+-.-+|-.|.++..... .|. +|...
T Consensus 462 ~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~~---~vSDRyY~a 538 (988)
T KOG2038|consen 462 STESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKKND---YVSDRYYRA 538 (988)
T ss_pred cccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHhhh---hhHHHHHHH
Confidence 012334444433322 122334455556777777778888998888888888877653 444 45555
Q ss_pred hhhcccCc---ChhHHHHHHHHhhh
Q 001845 354 IITSLKDP---DISIRRRALDLLYG 375 (1006)
Q Consensus 354 i~~~L~d~---D~sIr~~aL~lL~~ 375 (1006)
+...|-|+ +.|=.-.=|.|||+
T Consensus 539 LY~kLLdP~l~~sSKq~m~LnLlyk 563 (988)
T KOG2038|consen 539 LYRKLLDPRLMNSSKQAMFLNLLYK 563 (988)
T ss_pred HHHHhcCcccCchHHHHHHHHHHHH
Confidence 55555454 22333334555553
No 139
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.38 E-value=34 Score=33.39 Aligned_cols=94 Identities=22% Similarity=0.161 Sum_probs=67.7
Q ss_pred CchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhc----CCC---HHhHH-HHHHHHHHHHhcC-C
Q 001845 85 PEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGN----IGG---REFAE-SLAPDVQKLIISS-S 155 (1006)
Q Consensus 85 ~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~----i~~---~e~~~-~l~~~V~~~l~s~-~ 155 (1006)
++-.-+-+.++-..+..++-..-++..|+|=|.++|+.++-+||..+-. .+. .+++. ....++.+++..+ .
T Consensus 15 ~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~ 94 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPK 94 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCC
Confidence 3444455556666666667778899999999999999999999987754 333 33333 5555777877642 4
Q ss_pred CChhHHHHHHHHHHHHHhhCCCc
Q 001845 156 CRPLVRKKAALCLLRLYRKNPDV 178 (1006)
Q Consensus 156 ~~~~VRKkA~lal~~l~~~~p~~ 178 (1006)
.++-||+|++-.+......++..
T Consensus 95 ~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 95 YDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC
Confidence 68899999998888777766653
No 140
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.16 E-value=2.9 Score=47.40 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=63.8
Q ss_pred eeecCCCeEEEEEEeE-----ecceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCC-cccCC------CCeeEEE
Q 001845 745 VLYEDPYVQIGIKAEW-----RGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVP-ETIPP------RAQVQCP 812 (1006)
Q Consensus 745 vlYe~~~lqI~~k~~~-----~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~-~tI~p------~~q~q~~ 812 (1006)
++|..++..|.+-+.. +.....+.+..-|+...++.++.+|+++|+.+++.++|.+ +.+++ -+-++|+
T Consensus 471 ~vyd~~GfRILlhfaq~~~pg~sdV~v~vlsmlntap~pikdI~lq~avpk~mkvkLQp~sgteL~~Fspi~ppaaitqv 550 (594)
T KOG1086|consen 471 TVYDSNGFRILLHFAQSDMPGRSDVLVVVLSMLNTAPQPIKDIVLQLAVPKSMKVKLQPPSGTELPAFSPIMPPAAITQV 550 (594)
T ss_pred EEEccCCcEEEeeeccCCCCCCCceEEEEEEeecCCCcchhhheeeeccccceeeeccCCCcccCCCCCCCCChHHHHHH
Confidence 5788888898887754 3344667778889999999999999999999888887765 33332 2334455
Q ss_pred EEEEecCCCCC--CcEEEEEEeeCCceE
Q 001845 813 LEVMNLRPSRD--VAVLDFSYKFNTNMV 838 (1006)
Q Consensus 813 v~v~~~~~~~~--~P~l~i~y~~~g~~~ 838 (1006)
+-+.+ |..+ ..+.+++|..||+.-
T Consensus 551 lllan--p~ke~vrlrykltf~~g~q~~ 576 (594)
T KOG1086|consen 551 LLLAN--PHKEKVRLRYKLTFNQGGQPF 576 (594)
T ss_pred HHhcC--ccccceeEEEEEEeecCCccc
Confidence 54444 4443 456667777777643
No 141
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=76.58 E-value=2.4e+02 Score=36.56 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=89.3
Q ss_pred chHHHHHHhccCCCcCchhhhHHHHHhhc---cc-ChhHHHHHHHHHHhhcCCCCh-----hHHhHHHHhhhcCC--CHH
Q 001845 70 FGHMEAVSLISAPKYPEKQVGYIVTSCLL---NE-NHDFLRLAINTVRNDIIGRNE-----TFQCLALTMVGNIG--GRE 138 (1006)
Q Consensus 70 f~~~~vi~L~~S~~~~~KrlgYL~l~~l~---~~-~~e~~~LviNsl~KDL~s~n~-----~~~~lAL~~l~~i~--~~e 138 (1006)
|.+.+....+...|. ++++-++.-+. .. -.+++.=++.++.- +-++-+ +--||||--++.=| -+.
T Consensus 341 ~vie~Lls~l~d~dt---~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT---VVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcc---hhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 344444444444544 34444433332 22 25666666666654 444322 34678888777644 488
Q ss_pred hHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHHHhhC-CCccccCcHHH-----HHHhhhcCCChhHHHHHHHH
Q 001845 139 FAESLAPDVQKLIISS------SCRPLVRKKAALCLLRLYRKN-PDVVNVDGWAD-----RMAQLLDERDLGVLTSSMSL 206 (1006)
Q Consensus 139 ~~~~l~~~V~~~l~s~------~~~~~VRKkA~lal~~l~~~~-p~~v~~~~~~~-----~l~~lL~d~d~~V~~~a~~l 206 (1006)
..+.+.|-|.+.+.-. ..-..||-.|+..+--++|.| |+.+. .+.+ .+...+-|++..+-.+|.++
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~--p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLK--PVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhh--HHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 8889999998888521 123579999999999999887 45554 2444 33445569999999999999
Q ss_pred HHHHHhcC
Q 001845 207 LVALVSNN 214 (1006)
Q Consensus 207 l~~I~~~~ 214 (1006)
+.|..-..
T Consensus 495 lqE~VGR~ 502 (1133)
T KOG1943|consen 495 LQENVGRQ 502 (1133)
T ss_pred HHHHhccC
Confidence 99988543
No 142
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.57 E-value=47 Score=40.66 Aligned_cols=193 Identities=17% Similarity=0.278 Sum_probs=120.6
Q ss_pred CHHhH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh-CCCccc--c----CcHHHHHHhhhcCCChhHHHHHHHHH
Q 001845 136 GREFA-ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRK-NPDVVN--V----DGWADRMAQLLDERDLGVLTSSMSLL 207 (1006)
Q Consensus 136 ~~e~~-~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~-~p~~v~--~----~~~~~~l~~lL~d~d~~V~~~a~~ll 207 (1006)
..||. .-..|.+.+.|. -.|..||..|++-+.-+|-. +||.-. . +.=...+.+||+|.=|+|-..|+-=+
T Consensus 167 Veeml~rL~~p~l~R~L~--a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv 244 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLK--ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGV 244 (1005)
T ss_pred HHHHHHHHHhHHHHHhhc--cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 35564 455577888887 56889999999999988865 566521 1 22345678899999999887776444
Q ss_pred HHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHc--cCCcccccccCC
Q 001845 208 VALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILM--GTDVVKNVNKNN 285 (1006)
Q Consensus 208 ~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~--~~~~~~~~~~~n 285 (1006)
+.+.. .|+.++|.- - +.+++..++. +-|+...+
T Consensus 245 ~k~~s----~fWe~iP~~------------------i-------------------~~~ll~kI~d~~a~dt~s~V---- 279 (1005)
T KOG1949|consen 245 CKITS----KFWEMIPPT------------------I-------------------LIDLLKKITDELAFDTSSDV---- 279 (1005)
T ss_pred HHHHH----HHHHHcCHH------------------H-------------------HHHHHHHHHHHhhhccchhe----
Confidence 43332 344444431 1 1122333321 11111111
Q ss_pred ChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHH----HhHHHhhhcccCc
Q 001845 286 ASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK----RHQAQIITSLKDP 361 (1006)
Q Consensus 286 ~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~----~~~~~i~~~L~d~ 361 (1006)
..-+|+++.-++.-+.+..+++.....|+-.|..+..-+|....+.|.+|-... +++ --.+.++.-|..+
T Consensus 280 --R~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 280 --RCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETD 353 (1005)
T ss_pred --ehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhcc
Confidence 133567777776666677788888888888888888899999999998886542 222 1234455666666
Q ss_pred ChhHHHHHHHHhhhccCccc
Q 001845 362 DISIRRRALDLLYGMCDVSN 381 (1006)
Q Consensus 362 D~sIr~~aL~lL~~l~n~~N 381 (1006)
..-+.|+-+.+++..|=+.|
T Consensus 354 ~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 354 SRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred ccHHHHHHHHHHHHhhcCCC
Confidence 67777777777776654443
No 143
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=76.09 E-value=28 Score=36.14 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhcc
Q 001845 306 EMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMC 377 (1006)
Q Consensus 306 ~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~ 377 (1006)
.+.++-.+.+.++..+++..+|+.+++.+..+....-. +- ..+...++.+..|++..||.+|.+++..+.
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-nP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-NP-KQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-Ch-HHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 34555555555566688889999999988877775311 11 235667777778899999999988887653
No 144
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.59 E-value=1.7e+02 Score=34.35 Aligned_cols=229 Identities=17% Similarity=0.222 Sum_probs=129.2
Q ss_pred hhHHhHHHHhhhcCCCHHh---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhh-cCCC
Q 001845 121 ETFQCLALTMVGNIGGREF---AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLL-DERD 196 (1006)
Q Consensus 121 ~~~~~lAL~~l~~i~~~e~---~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL-~d~d 196 (1006)
....++--..++.+...-. .+.+...+.+...+ ..++++|..|+-++.-+..|+|+.-..+.+.+.+..-+ ...+
T Consensus 165 ~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~ 243 (415)
T PF12460_consen 165 SRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALS-SEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSED 243 (415)
T ss_pred ccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCC
Confidence 3455666677777665332 23356666666654 45699999999999999999765422134444444444 2333
Q ss_pred hhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCC
Q 001845 197 LGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTD 276 (1006)
Q Consensus 197 ~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~ 276 (1006)
..-...++.++.-|.+ .++-+. +.....| .-+++.+|. +++.....-+.+.-++...+
T Consensus 244 ~~~~~~~~~~~~Wi~K-------aLv~R~--------~~~~~~~-~~~L~~lL~------~~~~g~~aA~~f~il~~d~~ 301 (415)
T PF12460_consen 244 SELRPQALEILIWITK-------ALVMRG--------HPLATEL-LDKLLELLS------SPELGQQAAKAFGILLSDSD 301 (415)
T ss_pred cchhHHHHHHHHHHHH-------HHHHcC--------CchHHHH-HHHHHHHhC------ChhhHHHHHHHHhhHhcCcH
Confidence 3344444544444432 122211 1111111 123444443 34444444444443332211
Q ss_pred cc-cccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHh-
Q 001845 277 VV-KNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQI- 354 (1006)
Q Consensus 277 ~~-~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i- 354 (1006)
.. ...+|.| +|.+. .+.+....+..|.....+.+...|-..|..|..|...-|. ..+..|..++
T Consensus 302 ~~l~~~~~a~---------vklLy----kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~-~vl~~~l~~Ll 367 (415)
T PF12460_consen 302 DVLNKENHAN---------VKLLY----KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK-SVLLPELPTLL 367 (415)
T ss_pred HhcCccccch---------hhhHH----hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH-HHHHHHHHHHH
Confidence 11 1112222 22222 2567777777776666666655787788888899887664 4566666555
Q ss_pred ---hhcccCcChhHHHHHHHHhhhccCcccHHHHHHH
Q 001845 355 ---ITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEE 388 (1006)
Q Consensus 355 ---~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~e 388 (1006)
+++|.-+|..++.-+|++|..+.+++ ..++.+
T Consensus 368 PLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~ 402 (415)
T PF12460_consen 368 PLLLQSLSLPDADVLLSSLETLKMILEEA--PELISE 402 (415)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHH
Confidence 57788888899999999999988777 444443
No 145
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.20 E-value=1.3e+02 Score=38.48 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=69.6
Q ss_pred HHHHHHHhhcC-CCChhHHhHHHHhhhcCC----CHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcccc
Q 001845 107 LAINTVRNDII-GRNETFQCLALTMVGNIG----GREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNV 181 (1006)
Q Consensus 107 LviNsl~KDL~-s~n~~~~~lAL~~l~~i~----~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~ 181 (1006)
++.-.|.+-++ +.-..++--|++.+-++- ...+.+...-.++.+.+ |.-.-|||+++-++..+.+..|-.+..
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCr--d~~vsvrk~~~~Sltel~~~~pr~~~~ 653 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCR--DRMVSVRKTGADSLTELMLRDPRLFSL 653 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhc--CcchHHHHHHHHHHHHHHhhCchhhhh
Confidence 34444555444 222234444554444432 24455666555555555 567779999999999999999987732
Q ss_pred -CcHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 001845 182 -DGWADRMAQLLDERDLGVLTSSMSLLVALV 211 (1006)
Q Consensus 182 -~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~ 211 (1006)
..|..-+..++.|.+..|.-.|..++..+.
T Consensus 654 ~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 654 SSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 479999999999999999888888766654
No 146
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=74.78 E-value=38 Score=33.07 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=67.8
Q ss_pred CCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhc----CCC---HHhH-HHHHHHHHHHHhc
Q 001845 82 PKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGN----IGG---REFA-ESLAPDVQKLIIS 153 (1006)
Q Consensus 82 ~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~----i~~---~e~~-~~l~~~V~~~l~s 153 (1006)
..-++-.-.-+.++-..+.+++-..-++..|+|=|.++||.++-+||+.+-. .|. .+++ ..+...+.+++.+
T Consensus 12 ~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 12 SLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred CCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC
Confidence 3344445555677777777777788899999999999999999999987754 333 2332 4566777788765
Q ss_pred CCCChhHHHHHHHHHHHHHhhCC
Q 001845 154 SSCRPLVRKKAALCLLRLYRKNP 176 (1006)
Q Consensus 154 ~~~~~~VRKkA~lal~~l~~~~p 176 (1006)
+...+.||+|++..+......++
T Consensus 92 ~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 92 KYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHc
Confidence 44455599998888776655543
No 147
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.23 E-value=2.7e+02 Score=35.88 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHhhhccCcc---cHHHHHHHHHHHhh----h----cChHhHHHHHHHHHHHHhhc
Q 001845 368 RALDLLYGMCDVS---NAKDIVEELLQYLS----T----ADFAMREELSLKAAILAEKF 415 (1006)
Q Consensus 368 ~aL~lL~~l~n~~---Nv~~Iv~eLl~yl~----~----~d~~~~~~lv~~I~~laeky 415 (1006)
-|+++|+.+|.+. |...++.-+.+-+. . .++--++-+...++.++..-
T Consensus 391 Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L 449 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASIL 449 (1010)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHH
Confidence 4788999888654 66666666555554 1 12333444566677777544
No 148
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=73.93 E-value=1.2e+02 Score=34.03 Aligned_cols=69 Identities=13% Similarity=0.259 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCCCc-hhHHHHHHHHHHHccCCcHHH-HHHh--HHHhhhcccCcChhHHHHHHHHhhhccC
Q 001845 310 QCIALLGKFIAVREPN-IRYLGLENMTRMLMVTDVHDI-IKRH--QAQIITSLKDPDISIRRRALDLLYGMCD 378 (1006)
Q Consensus 310 ~~~~~L~~fL~s~~~n-irylaL~~L~~l~~~~~~~~~-v~~~--~~~i~~~L~d~D~sIr~~aL~lL~~l~n 378 (1006)
..+..|..++.++.+| .-.+|+.-+.+++...|.... +.++ ...|+.+++++|..||-.||..++.+..
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 4566777888888888 778899999999987764333 3333 4678999999999999999998887543
No 149
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.28 E-value=17 Score=40.97 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=72.7
Q ss_pred hcCCCChhHHhHHHHhhhcCCC--HHhHHH-----HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc----ccCc
Q 001845 115 DIIGRNETFQCLALTMVGNIGG--REFAES-----LAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV----NVDG 183 (1006)
Q Consensus 115 DL~s~n~~~~~lAL~~l~~i~~--~e~~~~-----l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v----~~~~ 183 (1006)
=+++.+..+|.+|.++||.+.. |..-+. ....+.+++.+ +.+-.+|+||+.|+..++|.+|-.. +..+
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~-~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G 210 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS-DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG 210 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc-CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 4788899999999999998653 333322 33566777764 6778899999999999999998544 2234
Q ss_pred HHHHHHhhhcC--CChhHHHHHHHHHHHHHhcCh
Q 001845 184 WADRMAQLLDE--RDLGVLTSSMSLLVALVSNNH 215 (1006)
Q Consensus 184 ~~~~l~~lL~d--~d~~V~~~a~~ll~~I~~~~~ 215 (1006)
..-+.+.|.+ .+.....=++.|+..+.+.+.
T Consensus 211 -~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 211 -YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred -HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 3567788876 566666777888888776654
No 150
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=72.62 E-value=1.9e+02 Score=33.38 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=60.7
Q ss_pred CCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHh
Q 001845 82 PKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLII 152 (1006)
Q Consensus 82 ~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~ 152 (1006)
....+||++--++-.|+..-|+++.-+++.-.-=+.+.+--+|--|++-|...+..+...-+.+.+.++|.
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 35578999999999999999999999999755444566777999999999999988888888899999885
No 151
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=72.60 E-value=1.1e+02 Score=34.94 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=58.4
Q ss_pred HHHHhHHHhhhcccCcChhHHHHHHHHhhhccC-cccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHH----hhc-----
Q 001845 346 IIKRHQAQIITSLKDPDISIRRRALDLLYGMCD-VSNAKDIVEELLQYLSTADFAMREELSLKAAILA----EKF----- 415 (1006)
Q Consensus 346 ~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n-~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~la----eky----- 415 (1006)
.+++|...|..+|+.....+..-+|.||..|+. .+ ....+|++.++.- .-....++..-- ++-
T Consensus 53 iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~--g~~a~~v~~~fd~-----~~~~l~kll~~~~~~~~~~~~~~~ 125 (330)
T PF11707_consen 53 ILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDG--GALAREVLRSFDF-----SLKSLPKLLTPRKKEKEKDSESSK 125 (330)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCC--HHHHHHHHHhcCC-----chhhHHHHhccccccccccccccc
Confidence 466788888899998888898999999999987 33 4566777776632 212222222111 010
Q ss_pred --CCChhhHHHHHHHHHHhcCCcchHHHH
Q 001845 416 --APDLSWYVDVILQLIDKAGDFVSDDIW 442 (1006)
Q Consensus 416 --~~~~~w~vd~ll~ll~~~g~~v~~ei~ 442 (1006)
+.-...||++.+.++......+..+++
T Consensus 126 ~~~siR~~fI~F~Lsfl~~~~~~~~~~lL 154 (330)
T PF11707_consen 126 SKPSIRTNFIRFWLSFLSSGDPELKRDLL 154 (330)
T ss_pred cCcCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 122347999999999887654555544
No 152
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=71.65 E-value=20 Score=41.40 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=92.8
Q ss_pred HHHHHHHh---hCCCChHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCC--CCCchHHHHHH-hcc--
Q 001845 9 LSVFISDI---RNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGY--DVDFGHMEAVS-LIS-- 80 (1006)
Q Consensus 9 L~~fI~~i---r~~~~~~~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~--dv~f~~~~vi~-L~~-- 80 (1006)
|..+|.+| .-|-+.++|+-.=..=..=||..|... |.+.|+.+-+-++.-....+ .+...++..++ +++
T Consensus 185 L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~s---d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y 261 (370)
T PF08506_consen 185 LQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGS---DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQY 261 (370)
T ss_dssp HHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcccc---ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56666665 444455555555555556788888543 45567777777666555333 23334444443 333
Q ss_pred ----CCCcCchhhhHHHH--HhhcccCh------------hHHHHHHHHHHhhcC---CCChhHHhHHHHhhhcCCC---
Q 001845 81 ----APKYPEKQVGYIVT--SCLLNENH------------DFLRLAINTVRNDII---GRNETFQCLALTMVGNIGG--- 136 (1006)
Q Consensus 81 ----S~~~~~KrlgYL~l--~~l~~~~~------------e~~~LviNsl~KDL~---s~n~~~~~lAL~~l~~i~~--- 136 (1006)
+.+... +=|.+++ ++-..... ++.-...+.+.-||+ +..|..++-|++++...++
T Consensus 262 ~~~~~~~w~~-KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~ 340 (370)
T PF08506_consen 262 ASNPSNNWRS-KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP 340 (370)
T ss_dssp HH-TTT-HHH-HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-
T ss_pred hhCCcccHHH-HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC
Confidence 344443 3333333 33332211 455666777778888 6789999999999987655
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCL 168 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal 168 (1006)
++....+.+.+.++|. +++..|+-=||.|+
T Consensus 341 ~~~l~~~~~~l~~~L~--~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 KEQLLQIFPLLVNHLQ--SSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHHHTT--SS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCCcchhhhhhhhC
Confidence 7888899999999997 57888999999885
No 153
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.54 E-value=98 Score=38.90 Aligned_cols=178 Identities=16% Similarity=0.138 Sum_probs=107.7
Q ss_pred Hhhhccc-CcChhHHHHHHHHhh---hccCccc-----HHHHHHHHHHHhhh-cChHhHHHHHHHHHHHHhhcCCChhhH
Q 001845 353 QIITSLK-DPDISIRRRALDLLY---GMCDVSN-----AKDIVEELLQYLST-ADFAMREELSLKAAILAEKFAPDLSWY 422 (1006)
Q Consensus 353 ~i~~~L~-d~D~sIr~~aL~lL~---~l~n~~N-----v~~Iv~eLl~yl~~-~d~~~~~~lv~~I~~laeky~~~~~w~ 422 (1006)
+++.-|. +.|+++...+|.=|. .|.||+. ++.+|.-|..-+.. .+.++---+++++..++|-+|+.....
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 3444455 448888888876554 4557765 46677777777765 678999999999999999999888877
Q ss_pred HH------HHHHHHHhcCCcchHHHHHHHHHHHhcCCC--cHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCC
Q 001845 423 VD------VILQLIDKAGDFVSDDIWFRVVQFVTNNED--LQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARR 494 (1006)
Q Consensus 423 vd------~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~--l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~ 494 (1006)
|+ ++-+|+.+.=--+.++..+.+..|-+.+|. +|.-++..++.||+= +.-..-|+++-|....+..+..+
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDF--FSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDF--FSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCc
Confidence 77 333555554222677788888877777764 454455555556541 11122233444444433333221
Q ss_pred CCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhc
Q 001845 495 PGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHT 532 (1006)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~ 532 (1006)
.-....|.+=+|...+...+...-.....+++|+...|
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 10112344455666666666555555566666655544
No 154
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=70.50 E-value=1.7e+02 Score=34.74 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcchHHHHHhhhcCCCCCc
Q 001845 516 STVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPE 587 (1006)
Q Consensus 516 ~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~~~~~~~~vl~~mP~~~~ 587 (1006)
.+++.+-.|++- +....+.+.+.|..+++.-+...|.++|+||...++-| .+......|-.++
T Consensus 291 ~V~Aa~A~A~v~----l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~L-----i~~~~~rkp~Pnd 353 (441)
T PF12054_consen 291 RVLAAAASALVA----LGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARL-----IQLCVDRKPCPND 353 (441)
T ss_pred HHHHHHHHHHHH----hccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHH-----HHHHhCCCCCCcH
Confidence 344444444444 55556678899999999999999999999999987743 3333355554444
No 155
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.37 E-value=1.5e+02 Score=33.67 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=35.8
Q ss_pred cCCCCchhHHHHHHHHHHHccCCcHHHHHHh--HHHhhhcccCcChhHHHHHHHHhhhc
Q 001845 320 AVREPNIRYLGLENMTRMLMVTDVHDIIKRH--QAQIITSLKDPDISIRRRALDLLYGM 376 (1006)
Q Consensus 320 ~s~~~nirylaL~~L~~l~~~~~~~~~v~~~--~~~i~~~L~d~D~sIr~~aL~lL~~l 376 (1006)
++.+..-|-.+|+.|..++..-+...-+..+ ...++..+++.|..+|.+|.++|-..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~ 151 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTA 151 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3567778888888888887754432222222 23344466777777777777777653
No 156
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.22 E-value=56 Score=33.13 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHh----HHHhhhccc-CcChhHHHHHHHHhhhccC
Q 001845 304 EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRH----QAQIITSLK-DPDISIRRRALDLLYGMCD 378 (1006)
Q Consensus 304 ~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~----~~~i~~~L~-d~D~sIr~~aL~lL~~l~n 378 (1006)
....+...+..+..+|.++++.-|+.|+..+..++...+ .+.+.+| ...++..|+ .++..++..++..|..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~--- 94 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTR--- 94 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---
Confidence 456788889999999999999999999999999998753 2455443 334455555 3445566666666553
Q ss_pred cccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCc
Q 001845 379 VSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDL 455 (1006)
Q Consensus 379 ~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l 455 (1006)
|+.++..-..-.|+.+. +...-++..++++++. ....+.+...+..++..+|..
T Consensus 95 ----------l~~~~~~~p~l~Rei~t-----------p~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 95 ----------LFDLIRGKPTLTREIAT-----------PNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ----------HHHHhcCCCchHHHHhh-----------ccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 33344432222333332 3333456667777665 567788888888888888853
No 157
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.95 E-value=2.3e+02 Score=33.40 Aligned_cols=104 Identities=24% Similarity=0.396 Sum_probs=62.7
Q ss_pred CchhhhHHHHHhhcccChhHHHHHHHHHHhhcC--CCChhHHhHHHHhhhcCCCHHhH-HHHHHHHHHHHhcCCCChhHH
Q 001845 85 PEKQVGYIVTSCLLNENHDFLRLAINTVRNDII--GRNETFQCLALTMVGNIGGREFA-ESLAPDVQKLIISSSCRPLVR 161 (1006)
Q Consensus 85 ~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~--s~n~~~~~lAL~~l~~i~~~e~~-~~l~~~V~~~l~s~~~~~~VR 161 (1006)
.-|.++-+....+-..+.+++++++.-++| |. +.|. -+|. ..+..-+.++. |..+|-+|
T Consensus 301 rrkniV~mLVKaLdr~n~~Ll~lv~~FLkK-LSIf~eNK---------------~~M~~~~iveKL~klf--p~~h~dL~ 362 (791)
T KOG1222|consen 301 RRKNIVAMLVKALDRSNSSLLTLVIKFLKK-LSIFDENK---------------IVMEQNGIVEKLLKLF--PIQHPDLR 362 (791)
T ss_pred HHHhHHHHHHHHHcccchHHHHHHHHHHHH-hhhhccch---------------HHHHhccHHHHHHHhc--CCCCHHHH
Confidence 457788888888888899998888877766 22 1111 1121 12333334444 46788888
Q ss_pred HHHHHHHHHHHhhC----CCccccCcHHHHHHhhhc-CCChhHHHHHHHHHHHHH
Q 001845 162 KKAALCLLRLYRKN----PDVVNVDGWADRMAQLLD-ERDLGVLTSSMSLLVALV 211 (1006)
Q Consensus 162 KkA~lal~~l~~~~----p~~v~~~~~~~~l~~lL~-d~d~~V~~~a~~ll~~I~ 211 (1006)
|..+.-++.+- .+ |-.+. .++.+.+..+|+ |..+|+. +..++.+.
T Consensus 363 ~~tl~LlfNlS-FD~glr~KMv~-~GllP~l~~ll~~d~~~~iA---~~~lYh~S 412 (791)
T KOG1222|consen 363 KATLMLLFNLS-FDSGLRPKMVN-GGLLPHLASLLDSDTKHGIA---LNMLYHLS 412 (791)
T ss_pred HHHHHHhhhcc-ccccccHHHhh-ccchHHHHHHhCCcccchhh---hhhhhhhc
Confidence 87766655442 11 22232 578899999997 5666654 44455444
No 158
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=69.84 E-value=2.3e+02 Score=33.30 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=112.3
Q ss_pred cHHHHHHHHHHHhhhc-ChHhHHHHHHHHHHHHhhcCCCh--hhHHHHHHHHH-HhcCCcchHHHHHHH----HHH-Hhc
Q 001845 381 NAKDIVEELLQYLSTA-DFAMREELSLKAAILAEKFAPDL--SWYVDVILQLI-DKAGDFVSDDIWFRV----VQF-VTN 451 (1006)
Q Consensus 381 Nv~~Iv~eLl~yl~~~-d~~~~~~lv~~I~~laeky~~~~--~w~vd~ll~ll-~~~g~~v~~ei~~~i----~~i-i~~ 451 (1006)
+..++++++++..... +...|.-....++.++.||+.+. +-+++.+.+-+ ...........+..+ +-+ +++
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 6777999999988764 56667777777899999997654 23333333333 111111222222222 223 344
Q ss_pred CCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCC--CC---hHHHH----HHHHhhCCCCChhHHHHHH
Q 001845 452 NEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPG--CS---PKEIF----SIIHEKLPTVSMSTVAILL 522 (1006)
Q Consensus 452 ~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~--~~---~~~~~----~~l~~~~~~~s~~tr~~iL 522 (1006)
+|. -...+.++++.|.++.......+...-+++++.+.+..... +. ...+| -.|.+.|...+.+.|...|
T Consensus 266 ~~~-~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 266 HPL-ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred Cch-HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 554 44567889999999877777788778888886655443111 11 12223 3455567777777999999
Q ss_pred HHHHHHHhhcCCCChh-HH---HHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 001845 523 STYAKILMHTQPADPE-LQ---NQIWAIFNKYESCIEVEIQQRAVEYFALS 569 (1006)
Q Consensus 523 ta~~Kl~~~~~~~~~e-~~---~~v~~vl~~~~~s~d~EvqqRA~eyl~Ll 569 (1006)
+|+.-+.-+. ..+ +. +.+..++-......|.+++--+-+-+..+
T Consensus 345 ~ALs~ll~~v---P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 345 TALSHLLKNV---PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMI 392 (415)
T ss_pred HHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999975542 122 22 33445555566788888777666555443
No 159
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=69.80 E-value=22 Score=39.65 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=62.2
Q ss_pred hhHHHHHHHHhhhcc-------CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhh-----HHHHHHHHH
Q 001845 363 ISIRRRALDLLYGMC-------DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSW-----YVDVILQLI 430 (1006)
Q Consensus 363 ~sIr~~aL~lL~~l~-------n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w-----~vd~ll~ll 430 (1006)
+++-|-+-=+|..|| |.+|+...+.-|.+-+...|.++..+++=+|..|..---....- +-.-++.+|
T Consensus 215 ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 215 ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh
Confidence 455555555666666 34455555555656555666666666666655553110000001 111255666
Q ss_pred HhcCCcchHHHHHHHHHHHhcCCCcHH------HHHHHHHHhhcCCchhhHHHHHHHhhhccc
Q 001845 431 DKAGDFVSDDIWFRVVQFVTNNEDLQP------YAAAKAREYLDKPAIHETMVKVSAYLLGEY 487 (1006)
Q Consensus 431 ~~~g~~v~~ei~~~i~~ii~~~~~l~~------~a~~~l~~~L~~~~~~e~l~k~~~wilGEy 487 (1006)
+...-.+-.-++..+-.|++.+.. |. -++..+..+|..+ .+.+-|-++|-+...
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~-QTqviI~~G~L~a~~~lLs~~--ke~irKEaCWTiSNI 354 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDD-QTQVIINCGALKAFRSLLSSP--KENIRKEACWTISNI 354 (526)
T ss_pred cCccccccCHHHHhhcCeeecCcc-ceehheecccHHHHHHHhcCh--hhhhhhhhheeeccc
Confidence 665544555555555566655432 22 1333444445543 456667788977543
No 160
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.07 E-value=1.8e+02 Score=31.88 Aligned_cols=221 Identities=17% Similarity=0.211 Sum_probs=114.2
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhhCC-CccccCcHHHHHHhhhcC--CChhHHHHHHHHHHHHHhcChhhhhccCC
Q 001845 147 VQKLIISSSCRPLVRKKAALCLLRLYRKNP-DVVNVDGWADRMAQLLDE--RDLGVLTSSMSLLVALVSNNHEAYWSCLP 223 (1006)
Q Consensus 147 V~~~l~s~~~~~~VRKkA~lal~~l~~~~p-~~v~~~~~~~~l~~lL~d--~d~~V~~~a~~ll~~I~~~~~~~~~~~v~ 223 (1006)
+...|+ +.++.+|.||..++..+...-| +.+.. +=+..+.+.+.+ .|+.++..++..+..+.+... |
T Consensus 4 Lg~~Lt--sed~~~R~ka~~~Ls~vL~~lp~~~L~~-~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~--~----- 73 (262)
T PF14500_consen 4 LGEYLT--SEDPIIRAKALELLSEVLERLPPDFLSR-QEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN--F----- 73 (262)
T ss_pred hhhhhC--CCCHHHHHHHHHHHHHHHHhCCHhhccH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC--C-----
Confidence 345566 4689999999999999888877 33432 223333333322 366666666777766663221 0
Q ss_pred CCCCCccccccCCCChhHHHHHHHHHh-cCCCC-CChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhc
Q 001845 224 KCDVPQEYTYYGIPSPWLQVKTMRALQ-YFPTV-EDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHL 301 (1006)
Q Consensus 224 ~l~~~~ey~~~~~~~pwlqvklLrlL~-~~~~~-~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l 301 (1006)
.+=.-.++++-+. .+... --+..+...++++..++++- ..++
T Consensus 74 --------------~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~-----------~~~l----------- 117 (262)
T PF14500_consen 74 --------------SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH-----------REAL----------- 117 (262)
T ss_pred --------------ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh-----------HHHH-----------
Confidence 0001223333322 22211 11234445566666555210 0000
Q ss_pred CCcHHHHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhccc--------CcChhHHHH--HH
Q 001845 302 DAEKEMMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK--------DPDISIRRR--AL 370 (1006)
Q Consensus 302 ~~~~~l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~--------d~D~sIr~~--aL 370 (1006)
.++-...+..+...+. .+||.--.++.+.+..+....+. ..+.+-.-+++.|.. +++.-|-+. +.
T Consensus 118 ---~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~ 193 (262)
T PF14500_consen 118 ---QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKR 193 (262)
T ss_pred ---HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHH
Confidence 0011112222323333 56776666677777777665442 111122222333322 222234443 33
Q ss_pred HHhhhcc-CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCC
Q 001845 371 DLLYGMC-DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAP 417 (1006)
Q Consensus 371 ~lL~~l~-n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~ 417 (1006)
.|.-.++ ++.=....+.-|++=+.......|.+....+..++++|..
T Consensus 194 ~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 194 ALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 3444444 3444467777777878777888999999999999999974
No 161
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=69.00 E-value=3.4e+02 Score=34.93 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHH-HHhHHHhhhcccCcChhHHHHHHHHhhhccCc-----c
Q 001845 307 MMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDII-KRHQAQIITSLKDPDISIRRRALDLLYGMCDV-----S 380 (1006)
Q Consensus 307 l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v-~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~-----~ 380 (1006)
...-...+|+.+..+.-.-+|--++++|.++....|..-.+ +.+.-.++-.++|.+..+..+|+.+|.++..+ +
T Consensus 613 ~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~ 692 (1529)
T KOG0413|consen 613 KFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSS 692 (1529)
T ss_pred cchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCC
Confidence 33444566777766677788889999999999887632112 35666777778899888999999987776554 2
Q ss_pred c-HHHHHHHHHHHhhhcChHhHHHH--HHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCC
Q 001845 381 N-AKDIVEELLQYLSTADFAMREEL--SLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNED 454 (1006)
Q Consensus 381 N-v~~Iv~eLl~yl~~~d~~~~~~l--v~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~ 454 (1006)
- +=.++.++-.|... +.++ ..++...-+|+. ..+ |-......|....+..|-.+.++....+.
T Consensus 693 dlaW~LL~~i~~~~~~-----s~yl~~~~h~w~~~~k~~---~t~---~d~~~~hsG~E~~~~aWm~~s~~~~q~~~ 758 (1529)
T KOG0413|consen 693 DLAWTLLDTIESVTNH-----SQYLMSTLHDWVREKKVK---RTV---MDSMKQHSGSEKLDGAWMVFSQLCVQFEQ 758 (1529)
T ss_pred chHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcc---hhh---hhhhhcccCcccCcchHHHHHHHHhcccc
Confidence 2 22233333333321 1111 222233333332 222 33334456767788899999998877765
No 162
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=68.14 E-value=2.7e+02 Score=33.37 Aligned_cols=385 Identities=11% Similarity=0.150 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHHhhCC-CccccCcHHHHHHhhhcCC-ChhHHHHHHHHHHHHHhcChh-------hhhccCCCCCCCc
Q 001845 159 LVRKKAALCLLRLYRKNP-DVVNVDGWADRMAQLLDER-DLGVLTSSMSLLVALVSNNHE-------AYWSCLPKCDVPQ 229 (1006)
Q Consensus 159 ~VRKkA~lal~~l~~~~p-~~v~~~~~~~~l~~lL~d~-d~~V~~~a~~ll~~I~~~~~~-------~~~~~v~~l~~~~ 229 (1006)
--|=+|+-.+.+..+.+| +.+. ..-.....|++.. ...+--+++.++.++++.... .|-..+..-..+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~ 82 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD 82 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence 356777888877777776 3332 3345777888754 455888999999999876633 2333332211122
Q ss_pred cccccCCCChhHHHHHHHHHhcCCCCC---ChhhHHHHHHHHHHHHc----c------C--Cccccccc---CCChhHHH
Q 001845 230 EYTYYGIPSPWLQVKTMRALQYFPTVE---DPNTRRSLFEVLQRILM----G------T--DVVKNVNK---NNASHAVL 291 (1006)
Q Consensus 230 ey~~~~~~~pwlqvklLrlL~~~~~~~---d~~~~~~l~~~l~~il~----~------~--~~~~~~~~---~n~~~aVl 291 (1006)
|+ -++++.|+-|+.-++.- +.+...-+...+..+.. . . ...++... ......=+
T Consensus 83 d~--------~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 83 DF--------DLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred hH--------HHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 21 38889999999877642 12222222233322220 0 0 00011000 11112344
Q ss_pred HHHHHHHHhcCC---cHHHHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcH-HHHHHhHHHhhhcccCcChhHH
Q 001845 292 FEALALVMHLDA---EKEMMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVH-DIIKRHQAQIITSLKDPDISIR 366 (1006)
Q Consensus 292 ~eai~~i~~l~~---~~~l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~-~~v~~~~~~i~~~L~d~D~sIr 366 (1006)
|+-+.-+++... +.+.+...++.+..... ++..+.--.+|..+-.++.....+ +.+......+=.. ..- .+..
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi-~~~-~~l~ 232 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSI-VNS-VSLC 232 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhH-hcc-cccc
Confidence 444444455543 34556666776666643 222332245566666665532111 2333333222111 111 1566
Q ss_pred HHHHHHhhhccCcccHHHHHHHHHHHhhhcC------hHhHHHHHHHHHHHHhhc-----CC---ChhhHHHHHHHHHHh
Q 001845 367 RRALDLLYGMCDVSNAKDIVEELLQYLSTAD------FAMREELSLKAAILAEKF-----AP---DLSWYVDVILQLIDK 432 (1006)
Q Consensus 367 ~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d------~~~~~~lv~~I~~laeky-----~~---~~~w~vd~ll~ll~~ 432 (1006)
..+-+++-.|+........+..|..++...+ ...-+-+|.-+..+.-++ +. ...-.+..+...++.
T Consensus 233 ~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred hhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 7788899999999999999999999995332 233334455555554333 21 112377788888887
Q ss_pred cCCcchHHHHHHHHHHH-hcCC-CcHHH-------HHHHHHHhhcCCchh-------hHHH----HHH-----Hhhhccc
Q 001845 433 AGDFVSDDIWFRVVQFV-TNNE-DLQPY-------AAAKAREYLDKPAIH-------ETMV----KVS-----AYLLGEY 487 (1006)
Q Consensus 433 ~g~~v~~ei~~~i~~ii-~~~~-~l~~~-------a~~~l~~~L~~~~~~-------e~l~----k~~-----~wilGEy 487 (1006)
....+.-||...+..++ .++- .+.+. ++..+.+.+...... +.+. ..+ .|=-|+|
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~ 392 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDF 392 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77778889988888888 3321 11111 222233333211100 1111 111 2222332
Q ss_pred cccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc-cCCChHHHHHHHHHH
Q 001845 488 SHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYE-SCIEVEIQQRAVEYF 566 (1006)
Q Consensus 488 g~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~-~s~d~EvqqRA~eyl 566 (1006)
. .+..++++.+.+.....++++-..++..-.|. +....++-...+.++++.|- .+.+.++|-+|.+.+
T Consensus 393 ~--------g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~---~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l 461 (464)
T PF11864_consen 393 N--------GPKDKLFNFFERVHSYLPDSSALLVLFYEERS---CSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVL 461 (464)
T ss_pred C--------ccHHHHHHHHHHHhccCCHHHHHHHHHHHhcc---cCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 2 12567788888877777777766666333331 12334555667777787765 888999999887654
No 163
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.07 E-value=10 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 001845 185 ADRMAQLLDERDLGVLTSSMSLLVALVSN 213 (1006)
Q Consensus 185 ~~~l~~lL~d~d~~V~~~a~~ll~~I~~~ 213 (1006)
++.+.++++|+++.|-.+|+..+..|+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 57888999999999999999999998864
No 164
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=68.06 E-value=2.2e+02 Score=32.46 Aligned_cols=134 Identities=13% Similarity=0.214 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhcChHhHHHHHHHHHHH--------HhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcH
Q 001845 385 IVEELLQYLSTADFAMREELSLKAAIL--------AEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQ 456 (1006)
Q Consensus 385 Iv~eLl~yl~~~d~~~~~~lv~~I~~l--------aeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~ 456 (1006)
.+..+.+|+.....++..++...+..+ ++=+..++.|+++...+||.. ++||..
T Consensus 165 ~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtk----------------- 226 (335)
T PF08569_consen 165 CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTK----------------- 226 (335)
T ss_dssp GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHH-----------------
T ss_pred HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEee-----------------
Confidence 566688899888888887777666553 233346778888877776644 455432
Q ss_pred HHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCC
Q 001845 457 PYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPAD 536 (1006)
Q Consensus 457 ~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~ 536 (1006)
..+++-|-++|-+.....-|.+ | ++..+-+.++...+...+..+|.-.. -..|+|+--.++.
T Consensus 227 rqslkLL~ellldr~n~~vm~~---y--------------i~~~~nLkl~M~lL~d~sk~Iq~eAF-hvFKvFVANp~K~ 288 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTR---Y--------------ISSPENLKLMMNLLRDKSKNIQFEAF-HVFKVFVANPNKP 288 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHH---H--------------TT-HHHHHHHHHHTT-S-HHHHHHHH-HHHHHHHH-SS-B
T ss_pred hhhHHHHHHHHHchhHHHHHHH---H--------------HCCHHHHHHHHHHhcCcchhhhHHHH-HHHHHHHhCCCCC
Confidence 2355555666655544444433 2 11235566666666666666665553 3567776644444
Q ss_pred hhH-------HHHHHHHHHHhccCC
Q 001845 537 PEL-------QNQIWAIFNKYESCI 554 (1006)
Q Consensus 537 ~e~-------~~~v~~vl~~~~~s~ 554 (1006)
+++ ++.+++.+..+..+.
T Consensus 289 ~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 289 PPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 443 345666777665444
No 165
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=66.50 E-value=1.2e+02 Score=38.85 Aligned_cols=198 Identities=17% Similarity=0.208 Sum_probs=108.7
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC-Ccccc-CcHHHH-HHhhhcCCChhHHHHHHHHHHHHHhc
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP-DVVNV-DGWADR-MAQLLDERDLGVLTSSMSLLVALVSN 213 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p-~~v~~-~~~~~~-l~~lL~d~d~~V~~~a~~ll~~I~~~ 213 (1006)
.++...+.+.+...+. +++.-=|+.|+-.+...+.... +.... .+..-+ +.-.+.|.|..|+..|...+..|+..
T Consensus 248 ~di~~ki~~~l~t~~~--s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 248 VDILSKITKNLETEML--SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhhcChHHHHhhh--ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 4556777788888886 5788899999999999998777 33321 122222 23334699999999999999999988
Q ss_pred ChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHH
Q 001845 214 NHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFE 293 (1006)
Q Consensus 214 ~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~e 293 (1006)
.+..|++..... .|.=..+.+.--+.+.--++.++..++.. . . +.++...++.. +.+.|. .+--|
T Consensus 326 lr~~~~~~~~~v-~p~lld~lkekk~~l~d~l~~~~d~~~ns-~-~----l~~~~~~I~e~------lk~knp--~~k~~ 390 (815)
T KOG1820|consen 326 LRPLFRKYAKNV-FPSLLDRLKEKKSELRDALLKALDAILNS-T-P----LSKMSEAILEA------LKGKNP--QIKGE 390 (815)
T ss_pred cchhhHHHHHhh-cchHHHHhhhccHHHHHHHHHHHHHHHhc-c-c----HHHHHHHHHHH------hcCCCh--hhHHH
Confidence 776665443221 11111222333333333444444433321 0 0 11122222211 112222 33333
Q ss_pred HHHHH----HhcC---CcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHH
Q 001845 294 ALALV----MHLD---AEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQA 352 (1006)
Q Consensus 294 ai~~i----~~l~---~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~ 352 (1006)
|..++ -.++ .....+..++..+.......+.++|-.+++++..+....+. +.++++..
T Consensus 391 ~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge-~~~~k~L~ 455 (815)
T KOG1820|consen 391 CLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE-EVFKKLLK 455 (815)
T ss_pred HHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence 33222 2233 23445666666666666677778888888887777765432 34444433
No 166
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.44 E-value=1.9e+02 Score=36.59 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=49.8
Q ss_pred CCChhHHHHHHHHHHHHHh--hCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh
Q 001845 155 SCRPLVRKKAALCLLRLYR--KNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE 216 (1006)
Q Consensus 155 ~~~~~VRKkA~lal~~l~~--~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~ 216 (1006)
|.-+-+|--|+.-+.|+++ +....+..+.......+.|.|.|+-|-++|+..+.-+|...|+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 4567799999999999998 4444554467788889999999999999999988888876654
No 167
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=66.20 E-value=2.4e+02 Score=32.09 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=68.2
Q ss_pred CchhHHHHHHHHHHHccCCc---HHHHHHhHHHhhhcccCc--ChhHHHHHHHHhhhccCcc---cHHHHHHHHHHHhhh
Q 001845 324 PNIRYLGLENMTRMLMVTDV---HDIIKRHQAQIITSLKDP--DISIRRRALDLLYGMCDVS---NAKDIVEELLQYLST 395 (1006)
Q Consensus 324 ~nirylaL~~L~~l~~~~~~---~~~v~~~~~~i~~~L~d~--D~sIr~~aL~lL~~l~n~~---Nv~~Iv~eLl~yl~~ 395 (1006)
.+-..-.++.+..+....+. .+....+-..++.++-++ ...+|+.|+++|..+.... =...|++++-+++..
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKWLSS 255 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 33344455555555543211 011233444566666666 7889999999999876443 347788999999875
Q ss_pred cCh------------HhHHHHHHHHHHHHhhcCC----ChhhHHHHHHHHHHhcCCc-chH-HHHHHHHHHHhcCC
Q 001845 396 ADF------------AMREELSLKAAILAEKFAP----DLSWYVDVILQLIDKAGDF-VSD-DIWFRVVQFVTNNE 453 (1006)
Q Consensus 396 ~d~------------~~~~~lv~~I~~laeky~~----~~~w~vd~ll~ll~~~g~~-v~~-ei~~~i~~ii~~~~ 453 (1006)
.+. ....-+...|+.....+.. ..+ .-+.+.++|-.+... +.. ..|.++++-..-+|
T Consensus 256 ~~~~~~~s~~~~~~~~~~~~v~~ai~~~~~~~~~~~~~~~~-~~~~~~~lLvla~hp~i~~~~~Wi~L~~~~~lDP 330 (339)
T PF12074_consen 256 SETGDKESSAENSSDKNLSPVLSAICLAPADLSISDGSSAD-LESQLVSLLVLAHHPLIPRKNLWIDLCQRAGLDP 330 (339)
T ss_pred ccccccccccccccccccccchHHHHhhhHhhhccccchhH-HHHHHHHHHHHhCcHhhcccchHHHHHHHcCCCH
Confidence 321 1122233333333322221 111 444555555555422 222 36888777654444
No 168
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=66.17 E-value=61 Score=32.07 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=57.0
Q ss_pred HHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhc----CCC---HHh-HHHHHHHHHHHHhcCCCChhHHHH
Q 001845 92 IVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGN----IGG---REF-AESLAPDVQKLIISSSCRPLVRKK 163 (1006)
Q Consensus 92 L~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~----i~~---~e~-~~~l~~~V~~~l~s~~~~~~VRKk 163 (1006)
|-++-..+.+++-..-++..|+|-|+++|+.++-+||..+-. .|. .++ ...+...+.+++.. ..++-||+|
T Consensus 26 leicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~k 104 (142)
T cd03569 26 LEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQK 104 (142)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHH
Confidence 334444444444456788999999999999999999976543 333 222 25666677777653 578899999
Q ss_pred HHHHHHHHHhhCC
Q 001845 164 AALCLLRLYRKNP 176 (1006)
Q Consensus 164 A~lal~~l~~~~p 176 (1006)
++..+..-...++
T Consensus 105 il~li~~W~~~f~ 117 (142)
T cd03569 105 ILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHhC
Confidence 8887766555544
No 169
>COG1470 Predicted membrane protein [Function unknown]
Probab=66.13 E-value=28 Score=40.58 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=53.7
Q ss_pred ecceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCC-cccCCCCeeEEEEEEEecCCCC-CCcEEEEEEee
Q 001845 761 RGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMNLRPSR-DVAVLDFSYKF 833 (1006)
Q Consensus 761 ~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~-~tI~p~~q~q~~v~v~~~~~~~-~~P~l~i~y~~ 833 (1006)
.|....+.+.+.|....||+|+.+.+..|.++.++.++-. +.|.||+.....+.|++ |-. .+=-.++.++.
T Consensus 395 aGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v--P~~a~aGdY~i~i~~ 467 (513)
T COG1470 395 AGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV--PEDAGAGDYRITITA 467 (513)
T ss_pred CCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc--CCCCCCCcEEEEEEE
Confidence 3556778889999999999999999999999988887766 89999998876666665 444 23344444443
No 170
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.74 E-value=63 Score=40.53 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=53.2
Q ss_pred HHHHHHHhhcCCCChhHHhHHHHhhhcCCC------HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC
Q 001845 107 LAINTVRNDIIGRNETFQCLALTMVGNIGG------REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP 176 (1006)
Q Consensus 107 LviNsl~KDL~s~n~~~~~lAL~~l~~i~~------~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p 176 (1006)
..+|++.+-..+++...|+.++..+|.++- .+..-++...|..+.+ +|.++.|||.|+.-+..+.+--.
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccc
Confidence 689999999999999999999988887542 3344444555555555 58899999999999988887544
No 171
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=65.68 E-value=16 Score=37.17 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhh
Q 001845 159 LVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAY 218 (1006)
Q Consensus 159 ~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~ 218 (1006)
-+||.|.-|++.++...++.+....+.+++..-|.| ++.+..-+...+..++...|...
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v 100 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEV 100 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHH
Confidence 599999999999999999888666889999999999 88888888888888888777654
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.88 E-value=8.9 Score=36.63 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=43.4
Q ss_pred HHHHHHhh-cCCCCchhHHHHHHHHHHHccCCcH-HHHH--HhHHHhhhcccCcChhHHHHHHHHhhhc
Q 001845 312 IALLGKFI-AVREPNIRYLGLENMTRMLMVTDVH-DIIK--RHQAQIITSLKDPDISIRRRALDLLYGM 376 (1006)
Q Consensus 312 ~~~L~~fL-~s~~~nirylaL~~L~~l~~~~~~~-~~v~--~~~~~i~~~L~d~D~sIr~~aL~lL~~l 376 (1006)
+..|..+| .+.|+..--+|+.-|..++...|.. ..+. .....|+.++.++|..||..||..+.++
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34455555 3456667777777777777766542 2333 2456788999999999999999887765
No 173
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.64 E-value=4.3e+02 Score=34.14 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhh-cCCChhH-H-HHHHHHHHHHHhcChhh
Q 001845 141 ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLL-DERDLGV-L-TSSMSLLVALVSNNHEA 217 (1006)
Q Consensus 141 ~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL-~d~d~~V-~-~~a~~ll~~I~~~~~~~ 217 (1006)
+.+...+...+ +++|-+||+|=.-+-.+. +-| +|...+.+.+ +|..+.. - .+|+.+=..|.+.-+..
T Consensus 4 ~~l~~~~~~T~---d~d~~~R~~AE~~L~q~~-K~p------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~ 73 (1010)
T KOG1991|consen 4 QSLLQIFRATI---DSDAKERKAAEQQLNQLE-KQP------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSH 73 (1010)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHHhh-cCC------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCcc
Confidence 34455555555 467999998877766655 334 5556666665 4555544 3 44443333344322110
Q ss_pred hhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHH-HHHHHHHccCCcccccccCCChhHHHHHHHH
Q 001845 218 YWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLF-EVLQRILMGTDVVKNVNKNNASHAVLFEALA 296 (1006)
Q Consensus 218 ~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~-~~l~~il~~~~~~~~~~~~n~~~aVl~eai~ 296 (1006)
. - |. .-+.. .++.+..++ .++..++.+. +.-...+-+|++
T Consensus 74 -~--~--------------~g-----------~~~~I--~e~dk~~irenIl~~iv~~p---------~~iRvql~~~l~ 114 (1010)
T KOG1991|consen 74 -E--A--------------PG-----------RPFGI--PEEDKAVIRENILETIVQVP---------ELIRVQLTACLN 114 (1010)
T ss_pred -C--C--------------CC-----------CcCCC--ChHHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHH
Confidence 0 0 00 00011 112222222 4455555321 113356778888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC
Q 001845 297 LVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT 341 (1006)
Q Consensus 297 ~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~ 341 (1006)
.|+.-+-.. ---..+.....+|.+.+.|--|.||-+|.+|+..+
T Consensus 115 ~Ii~~D~p~-~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 115 TIIKADYPE-QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred HHHhcCCcc-cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 998876542 23445667778899999999999999999999743
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.51 E-value=43 Score=42.77 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=95.8
Q ss_pred hHHHHHHhccCCCcCchhh-hHHHHHhhcccChhHHHHHHHHHHhh---------c---CCCChhHHhHHHHhhhcCCCH
Q 001845 71 GHMEAVSLISAPKYPEKQV-GYIVTSCLLNENHDFLRLAINTVRND---------I---IGRNETFQCLALTMVGNIGGR 137 (1006)
Q Consensus 71 ~~~~vi~L~~S~~~~~Krl-gYL~l~~l~~~~~e~~~LviNsl~KD---------L---~s~n~~~~~lAL~~l~~i~~~ 137 (1006)
.|+-|+||++|+-.++|.+ +++-+.+++-..+=-+- |.|| | ..-++..|++|-=.|+.|...
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d-----LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD-----LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH-----HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 3889999999999999986 55556665543221222 2344 2 222457888888777776542
Q ss_pred -----Hh--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc---ccCcHHHHHHhhhcCCChhHHHHHHHHH
Q 001845 138 -----EF--AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV---NVDGWADRMAQLLDERDLGVLTSSMSLL 207 (1006)
Q Consensus 138 -----e~--~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v---~~~~~~~~l~~lL~d~d~~V~~~a~~ll 207 (1006)
+- -..++..-...+.+ +..|..|.-.++|+-+|..-+++.- ..+.-.+++..+|.|+-|.|-.+|+-+|
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd-~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLND-DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFAL 666 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcC-CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 11 13444455566664 2479999999999999999998642 2246679999999999999999999888
Q ss_pred HHHHhc
Q 001845 208 VALVSN 213 (1006)
Q Consensus 208 ~~I~~~ 213 (1006)
-.+...
T Consensus 667 gtfl~~ 672 (1387)
T KOG1517|consen 667 GTFLSN 672 (1387)
T ss_pred HHHhcc
Confidence 766653
No 175
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=62.48 E-value=3.4e+02 Score=38.00 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhccc----CcChhHHHHHHHHhhhccCc----
Q 001845 309 SQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK----DPDISIRRRALDLLYGMCDV---- 379 (1006)
Q Consensus 309 ~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~----d~D~sIr~~aL~lL~~l~n~---- 379 (1006)
+...+++...+. +.+.++|=.+|+++.+|+.... +.++.=-.+||..+. ++...|-+.|-+.+-.++++
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~ 1258 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPY 1258 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhh
Confidence 344555555443 6678999999999999987542 234433445555444 77788888999887765443
Q ss_pred ------ccHHHHHHHHHHHhhh
Q 001845 380 ------SNAKDIVEELLQYLST 395 (1006)
Q Consensus 380 ------~Nv~~Iv~eLl~yl~~ 395 (1006)
+++...|+-|.+|...
T Consensus 1259 l~~~~~~~F~DlV~cL~~Fa~q 1280 (1780)
T PLN03076 1259 ITETETTTFTDCVNCLIAFTNS 1280 (1780)
T ss_pred ccccchhHHHHHHHHHHHHHhC
Confidence 5667777777777754
No 176
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=62.16 E-value=3e+02 Score=31.82 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=36.8
Q ss_pred hhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhh
Q 001845 355 ITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLST 395 (1006)
Q Consensus 355 ~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~ 395 (1006)
+.|..|+|..||+.|+.=|-.+|..++...+.++|.+-|..
T Consensus 67 ~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk 107 (460)
T KOG2213|consen 67 LDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNK 107 (460)
T ss_pred hccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHH
Confidence 67889999999999999999999999999999888877763
No 177
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=61.74 E-value=2.5e+02 Score=34.85 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhh----cChHhHHHHHHHHHHHHhhcCCC--------------hhhHHHHHHHHHHhcCCcchHHHHHH
Q 001845 383 KDIVEELLQYLST----ADFAMREELSLKAAILAEKFAPD--------------LSWYVDVILQLIDKAGDFVSDDIWFR 444 (1006)
Q Consensus 383 ~~Iv~eLl~yl~~----~d~~~~~~lv~~I~~laeky~~~--------------~~w~vd~ll~ll~~~g~~v~~ei~~~ 444 (1006)
.+++++|...+.. .+..++..++..++.++.++-.. .+-|++.+.+.+..+-+.-..+-...
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 6677777666652 35678888888888777655333 23455555555553221111122222
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHH-HHhhhccccccccCCCCCChHHHHHHHHhhC--CCCChhHHHHH
Q 001845 445 VVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKV-SAYLLGEYSHLLARRPGCSPKEIFSIIHEKL--PTVSMSTVAIL 521 (1006)
Q Consensus 445 i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~-~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~--~~~s~~tr~~i 521 (1006)
.++-+.|-. +..++..+..++.+.......+|+ |+|-+..+.... |.++...+..-| ..++.++|...
T Consensus 510 ~LkaLgN~g--~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-------~~~v~~~l~~I~~n~~e~~EvRiaA 580 (618)
T PF01347_consen 510 YLKALGNLG--HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-------PEKVREILLPIFMNTTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHHHT---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------HHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHhhccC--CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-------cHHHHHHHHHHhcCCCCChhHHHHH
Confidence 233333321 112455666666655222333443 577776554432 344444555544 34667777777
Q ss_pred HHHHHH
Q 001845 522 LSTYAK 527 (1006)
Q Consensus 522 Lta~~K 527 (1006)
+..+++
T Consensus 581 ~~~lm~ 586 (618)
T PF01347_consen 581 YLILMR 586 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777777
No 178
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.57 E-value=35 Score=39.84 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCC-C-C--ch--HHHHHHhccC-CCcCchhhhHHHHHh
Q 001845 24 QERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYD-V-D--FG--HMEAVSLISA-PKYPEKQVGYIVTSC 96 (1006)
Q Consensus 24 ~e~~~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~d-v-~--f~--~~~vi~L~~S-~~~~~KrlgYL~l~~ 96 (1006)
+.-+.|+.-+.+++.. . ...+++.++..|.-+..-|-- + + |+ +..+++.+.. .++..|+++.=.+..
T Consensus 283 ~~~~~v~~~l~~~~g~---e---~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ 356 (516)
T KOG2956|consen 283 DQSALVADLLKEISGS---E---RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLRE 356 (516)
T ss_pred chhHHHHHHHHhccCc---c---chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 3344555555554421 1 133567777766666665521 1 1 11 2334454444 677788887777777
Q ss_pred hcccChh----HHHHHHHHHHh---h--------------------------------cCCCChhHHhHHHHhhhcCC--
Q 001845 97 LLNENHD----FLRLAINTVRN---D--------------------------------IIGRNETFQCLALTMVGNIG-- 135 (1006)
Q Consensus 97 l~~~~~e----~~~LviNsl~K---D--------------------------------L~s~n~~~~~lAL~~l~~i~-- 135 (1006)
++..++. -..++|-.+.. | +...++-...++|+++..+.
T Consensus 357 ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 357 MLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred HHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 7666542 11122222211 1 11122223335665555543
Q ss_pred --CHHh---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC
Q 001845 136 --GREF---AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP 176 (1006)
Q Consensus 136 --~~e~---~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p 176 (1006)
-.++ .++++|.|.+...| .+.-|||.|+.|+.-+|..-.
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S--~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDS--TSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcC--chHHhhhhHHHhHHHHHHHHh
Confidence 2333 57888999998874 577899999999999998754
No 179
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=61.18 E-value=1.5e+02 Score=30.25 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=53.2
Q ss_pred HHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHH
Q 001845 370 LDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVV 446 (1006)
Q Consensus 370 L~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~ 446 (1006)
+.-+..=.+++|++.+++++.+.....+.+....++..|...+..-+.....|...+-.+-..-+..+...++..+.
T Consensus 4 v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~ 80 (209)
T PF02854_consen 4 VRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQ 80 (209)
T ss_dssp HHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 33344344599999999999998887788999999999988887766666777776666544433123334444333
No 180
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.98 E-value=90 Score=30.97 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=61.7
Q ss_pred hhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhc----CCC---HHhH-HHHHHHHHHHHhcCCCChh
Q 001845 88 QVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGN----IGG---REFA-ESLAPDVQKLIISSSCRPL 159 (1006)
Q Consensus 88 rlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~----i~~---~e~~-~~l~~~V~~~l~s~~~~~~ 159 (1006)
--+.|-++-..+.+++-..-++.+|+|=|.++|+.++-+||..+-. .|. .+++ ..+...+.+++..+ .++-
T Consensus 18 w~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~ 96 (144)
T cd03568 18 WGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPT 96 (144)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHH
Confidence 3344446666666666677899999999999999999999987654 333 2332 56677777777643 7889
Q ss_pred HHHHHHHHHHHHHhhCC
Q 001845 160 VRKKAALCLLRLYRKNP 176 (1006)
Q Consensus 160 VRKkA~lal~~l~~~~p 176 (1006)
||+|.+..+......++
T Consensus 97 Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 97 VKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99998877765544443
No 181
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=60.73 E-value=3.6e+02 Score=32.28 Aligned_cols=125 Identities=23% Similarity=0.307 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhh--hcc-cCcChhHHHHHHHHhhhccCcc-
Q 001845 305 KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQII--TSL-KDPDISIRRRALDLLYGMCDVS- 380 (1006)
Q Consensus 305 ~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~--~~L-~d~D~sIr~~aL~lL~~l~n~~- 380 (1006)
.+-+..++..|++..... ++.=.+.++|..|+..+-...++ ...-.|+ ..- +.+|..+-|=|+.+|-.+.-..
T Consensus 212 ~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~~i-~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 212 SESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHSAI-RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred hHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHHHH-HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 345677888888875444 55666788888888654323334 2333333 111 1355666778888887665333
Q ss_pred --c-----HHH--HHHHHHHHhhhcChHhHHHHHHHHHHHH-hhcCC---Chhh--HHHHHHHHHHh
Q 001845 381 --N-----AKD--IVEELLQYLSTADFAMREELSLKAAILA-EKFAP---DLSW--YVDVILQLIDK 432 (1006)
Q Consensus 381 --N-----v~~--Iv~eLl~yl~~~d~~~~~~lv~~I~~la-eky~~---~~~w--~vd~ll~ll~~ 432 (1006)
. ... ++..|..-++..+.-+--|++..|..+- .+|.. ...| .++++.+++..
T Consensus 289 ~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~ 355 (464)
T PF11864_consen 289 EQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDK 355 (464)
T ss_pred cCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhh
Confidence 2 222 7777777776555555556666666665 66642 2344 44555444333
No 182
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=60.44 E-value=4.7e+02 Score=33.53 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=54.5
Q ss_pred CCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHhhCCCccc--cCcHHHHHHhhh-
Q 001845 118 GRNETFQCLALTMVGNIGGREFAESLAPDVQKLII--SSSCRPLVRKKAALCLLRLYRKNPDVVN--VDGWADRMAQLL- 192 (1006)
Q Consensus 118 s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~--s~~~~~~VRKkA~lal~~l~~~~p~~v~--~~~~~~~l~~lL- 192 (1006)
+.-+.++.-|+++++..+.++.+..+.|.|...|. .+.++.-|----.-++..+.+.+|+.-. .+...+.+..+.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 34466777777777777777776555555555543 1244444544445555666777775331 123344444433
Q ss_pred -cCCChhHHHHHHHHHHHHHh
Q 001845 193 -DERDLGVLTSSMSLLVALVS 212 (1006)
Q Consensus 193 -~d~d~~V~~~a~~ll~~I~~ 212 (1006)
...||-|..-+--++.++++
T Consensus 582 k~s~DP~V~~~~qd~f~el~q 602 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQ 602 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHH
Confidence 24677666666666666665
No 183
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=60.38 E-value=1.6e+02 Score=34.63 Aligned_cols=201 Identities=12% Similarity=0.119 Sum_probs=107.1
Q ss_pred CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhh---hhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCCh
Q 001845 182 DGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEA---YWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDP 258 (1006)
Q Consensus 182 ~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~---~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~ 258 (1006)
..++.++..+++..|+.---....+++.|-...+.. .++.+... ..+| ++....+.+...+|+++..+...-..
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~--~~~f-i~e~~~~~gI~elLeil~sii~gf~~ 208 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI--FYRF-IYETERHNGIAELLEILGSIINGFAV 208 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH--HHHH-HHTTS--STHHHHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--HHHH-hcCcccccCHHHHHHHHHHHHhccCC
Confidence 578889999999899988777777888776544321 11111110 1122 34566788888899988876543111
Q ss_pred hhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q 001845 259 NTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRML 338 (1006)
Q Consensus 259 ~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~ 338 (1006)
...+....++.+++--.... ++-..-+.-+..|+..++.-+++ +....+..|.++==..++.-.-+-|+-+..++
T Consensus 209 plk~eh~~fl~~vllPLh~~---~~~~~y~~~L~~~~~~f~~kdp~--l~~~~i~~llk~WP~t~s~Kev~FL~el~~il 283 (409)
T PF01603_consen 209 PLKEEHKQFLRKVLLPLHKS---PHLSSYHQQLSYCVVQFLEKDPS--LAEPVIKGLLKHWPKTNSQKEVLFLNELEEIL 283 (409)
T ss_dssp S--HHHHHHHHHTTGGGGGS---TGGGGTHHHHHHHHHHHHHH-GG--GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Confidence 22333445665555211111 11222345566666666665543 44445555555443344444556666777776
Q ss_pred ccCCcHHHHHH----hHHHhhhcccCcChhHHHHHHHHhhhccCc-------ccHHHHHHHHHHHhh
Q 001845 339 MVTDVHDIIKR----HQAQIITSLKDPDISIRRRALDLLYGMCDV-------SNAKDIVEELLQYLS 394 (1006)
Q Consensus 339 ~~~~~~~~v~~----~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~-------~Nv~~Iv~eLl~yl~ 394 (1006)
..-+. ..+.+ -...+-.|+.++...|..+||.++- |+ +|.+.|+.-+..-+.
T Consensus 284 ~~~~~-~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~---n~~~~~li~~~~~~i~p~i~~~L~ 346 (409)
T PF01603_consen 284 EVLPP-EEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN---NEYFLSLISQNSRVILPIIFPALY 346 (409)
T ss_dssp TT--H-HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG---SHHHHHHHHCTHHHHHHHHHHHHS
T ss_pred HhcCH-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC---CHHHHHHHHhChHHHHHHHHHHHH
Confidence 64331 22332 3344557788888888888887743 33 455555555555444
No 184
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=59.42 E-value=1.3e+02 Score=33.83 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHHHHHHHhcChhhh---hccCCCCC---CCccccccCCCChhHHHHHHHHHhcCCCCCChhhH----HH
Q 001845 194 ERDLGVLTSSMSLLVALVSNNHEAY---WSCLPKCD---VPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTR----RS 263 (1006)
Q Consensus 194 d~d~~V~~~a~~ll~~I~~~~~~~~---~~~v~~l~---~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~----~~ 263 (1006)
.++..++-..+.++.+++..+|... ..+-..-+ +.+=......++++.+.+..++|..+....+.... +.
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 4678888888899999888876422 11110000 00000123456899999999999876543222211 22
Q ss_pred HHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHhh------c-CCCCchhHHHH
Q 001845 264 LFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMM-----SQCIALLGKFI------A-VREPNIRYLGL 331 (1006)
Q Consensus 264 l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~-----~~~~~~L~~fL------~-s~~~nirylaL 331 (1006)
+..+++ ++.+.- ++ ...-+.+-|+.++..+-..++.+ ...+..|...| . +....+.|-++
T Consensus 148 l~~ll~-~L~~~l-----~~--~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 148 LPKLLQ-WLSSQL-----SS--SDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQAL 219 (312)
T ss_dssp HHHHHH-HHH-TT------H--HHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHH-HHHHhh-----cC--CCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence 222222 332110 11 11122344444444432222211 34455666666 2 34567889999
Q ss_pred HHHHHHHccCCcHHHHHHhH--HHhhhccc-CcChhHHHHHHHHhhhccCccc---HHHHHH-HHHHHhh------hcCh
Q 001845 332 ENMTRMLMVTDVHDIIKRHQ--AQIITSLK-DPDISIRRRALDLLYGMCDVSN---AKDIVE-ELLQYLS------TADF 398 (1006)
Q Consensus 332 ~~L~~l~~~~~~~~~v~~~~--~~i~~~L~-d~D~sIr~~aL~lL~~l~n~~N---v~~Iv~-eLl~yl~------~~d~ 398 (1006)
-++-.|.-.......+.++. ..+..+++ ..-.-|-|.++-+|..+++... +..++. .+++.+. ..|.
T Consensus 220 l~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~De 299 (312)
T PF03224_consen 220 LCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDE 299 (312)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSH
T ss_pred HHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCH
Confidence 88888776432211222111 12223333 3344577788888888886655 333332 3444443 2577
Q ss_pred HhHHHH
Q 001845 399 AMREEL 404 (1006)
Q Consensus 399 ~~~~~l 404 (1006)
++.+++
T Consensus 300 dl~edl 305 (312)
T PF03224_consen 300 DLTEDL 305 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 185
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=59.16 E-value=1.2e+02 Score=30.13 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCC
Q 001845 287 SHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTD 342 (1006)
Q Consensus 287 ~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~ 342 (1006)
..+...|.+-.+-.=+ .--+.|+..|.+=|.++++|+.+.+|..|-.++...+
T Consensus 17 dw~~il~icD~I~~~~---~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG 69 (144)
T cd03568 17 NWGLILDVCDKVKSDE---NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG 69 (144)
T ss_pred CHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence 3466666555554321 2235577788777889999999999999988888665
No 186
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.85 E-value=28 Score=42.77 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=72.1
Q ss_pred cCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhh----cCCCHHhHHHHHHHHHHHHhcCC
Q 001845 80 SAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVG----NIGGREFAESLAPDVQKLIISSS 155 (1006)
Q Consensus 80 ~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~----~i~~~e~~~~l~~~V~~~l~s~~ 155 (1006)
+..+-..||-+-+++...+-.++|...-++.-+ -.|-|+++|+=|--+|| .-|..+-+..|.|. ++ |
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~~~~s~V~lL---ses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl-----~~-D 635 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLL---SESYNPHVRYGAAMALGIACAGTGLKEAINLLEPL-----TS-D 635 (929)
T ss_pred cccchHHHHHHHHHheeeEecChhhchHHHHHH---hhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhh-----hc-C
Confidence 445667888888888888888888755444443 35678888864444433 23445544444443 22 7
Q ss_pred CChhHHHHHHHHHHHHH-hhCCCcccc-CcHHHHHHhhhcCCChhHH
Q 001845 156 CRPLVRKKAALCLLRLY-RKNPDVVNV-DGWADRMAQLLDERDLGVL 200 (1006)
Q Consensus 156 ~~~~VRKkA~lal~~l~-~~~p~~v~~-~~~~~~l~~lL~d~d~~V~ 200 (1006)
...+||+-|++++.-+. +.++.+.+. ..|.+.+.+.+.|++..++
T Consensus 636 ~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 636 PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHH
Confidence 78899999999987655 444444431 3567777777778666543
No 187
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=58.48 E-value=5e+02 Score=33.27 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHHhhcCCC-ChhHHhHHHHhhhcCCC-----HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 001845 101 NHDFLRLAINTVRNDIIGR-NETFQCLALTMVGNIGG-----REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRK 174 (1006)
Q Consensus 101 ~~e~~~LviNsl~KDL~s~-n~~~~~lAL~~l~~i~~-----~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~ 174 (1006)
+.+...-.++.++.++... .|...+-|+-+++.... +.+.+.+...-...+. .|..+++|-+|+-++.-..+.
T Consensus 443 ~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~-~~~~~~~ki~a~~~~~~~~~~ 521 (1005)
T KOG2274|consen 443 NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALT-MDVPPPVKISAVRAFCGYCKV 521 (1005)
T ss_pred hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc-cCCCCchhHHHHHHHHhccCc
Confidence 3567788889999998764 56666678878776443 3444444444444443 478899999999887766533
Q ss_pred CCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh
Q 001845 175 NPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE 216 (1006)
Q Consensus 175 ~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~ 216 (1006)
.+=.-.-+.+.+.|.++..+....|+...+-.++.+|+-+|+
T Consensus 522 ~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe 563 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE 563 (1005)
T ss_pred eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh
Confidence 321111146777788888888888888888888888888875
No 188
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=58.09 E-value=2.4e+02 Score=33.17 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhH---HHHHHHHHHHhccCCChHHHHHHHHHH
Q 001845 499 PKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPEL---QNQIWAIFNKYESCIEVEIQQRAVEYF 566 (1006)
Q Consensus 499 ~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~---~~~v~~vl~~~~~s~d~EvqqRA~eyl 566 (1006)
...+++.+.++++..+..-+...|.-+..+.-.+. .++. ...+.+.+..|.+|.+..|-+||..+|
T Consensus 253 ~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~--~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 253 AEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP--PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678899999998888888888888888754321 1233 344556666788999999999998774
No 189
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=57.53 E-value=3.9e+02 Score=31.68 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHHHccCCc-H--HHHHHhHHHhhhcccC-cChhHHHHHHHHhhhccCcc------cHHHHHHHHHHHhh
Q 001845 325 NIRYLGLENMTRMLMVTDV-H--DIIKRHQAQIITSLKD-PDISIRRRALDLLYGMCDVS------NAKDIVEELLQYLS 394 (1006)
Q Consensus 325 nirylaL~~L~~l~~~~~~-~--~~v~~~~~~i~~~L~d-~D~sIr~~aL~lL~~l~n~~------Nv~~Iv~eLl~yl~ 394 (1006)
.-|=-||..|..+...... . +.+.+-...++..|.| .|.+||..||.+|-.||... ..+..+.++++-..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 4455677777777765421 1 2344445556777887 89999999999999998654 33344444444444
Q ss_pred hcCh
Q 001845 395 TADF 398 (1006)
Q Consensus 395 ~~d~ 398 (1006)
+.++
T Consensus 382 ds~~ 385 (516)
T KOG2956|consen 382 DSQD 385 (516)
T ss_pred CCch
Confidence 4333
No 190
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=57.30 E-value=13 Score=28.55 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHH
Q 001845 167 CLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLL 207 (1006)
Q Consensus 167 al~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll 207 (1006)
|+..+...+|+++..+...+.+...|.|+++.|--+|+.++
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 56678889999987667888899999999999998887653
No 191
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=57.14 E-value=2.3e+02 Score=28.95 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=38.2
Q ss_pred cCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 001845 377 CDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLI 430 (1006)
Q Consensus 377 ~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll 430 (1006)
.+++|++.++.+|.+.... +++.+..++..|...+...+....-|...+..+-
T Consensus 11 Ls~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~ 63 (200)
T smart00543 11 LSPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYARLCALLN 63 (200)
T ss_pred CCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 3589999999999987654 4678888888888877766655555555554443
No 192
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=56.79 E-value=1.6e+02 Score=32.74 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHH--------HHHHhHHHhhhccc--------CcChhHHHHH
Q 001845 306 EMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHD--------IIKRHQAQIITSLK--------DPDISIRRRA 369 (1006)
Q Consensus 306 ~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~--------~v~~~~~~i~~~L~--------d~D~sIr~~a 369 (1006)
+.....+..+..++...++.+|..|+..|.++..+-+... ..+-....+..||. ++...+=..+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 4556778888888888899999999999999998544211 12224455566666 4444555556
Q ss_pred HHHhhhc
Q 001845 370 LDLLYGM 376 (1006)
Q Consensus 370 L~lL~~l 376 (1006)
...|+.+
T Consensus 195 y~~L~~L 201 (282)
T PF10521_consen 195 YPALLSL 201 (282)
T ss_pred HHHHHHH
Confidence 6666666
No 193
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=55.95 E-value=1.3e+02 Score=38.15 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHHccCCcHHHHHHhHH----HhhhcccCcChhHHHHHHHH
Q 001845 308 MSQCIALLGKFIAVREPN---IRYLGLENMTRMLMVTDVHDIIKRHQA----QIITSLKDPDISIRRRALDL 372 (1006)
Q Consensus 308 ~~~~~~~L~~fL~s~~~n---irylaL~~L~~l~~~~~~~~~v~~~~~----~i~~~L~d~D~sIr~~aL~l 372 (1006)
....+..+..+=++.++| +|-.||++|..|..+-|.. .+..++. .++.+|.|+-+-||+.|.+.
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~-~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK-SLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc-ccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 334444444432334433 8999999999999866642 3333433 45677889989999999875
No 194
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=54.94 E-value=13 Score=28.49 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHh
Q 001845 334 MTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLL 373 (1006)
Q Consensus 334 L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL 373 (1006)
|..++..+|..-.-..-+..|...+.|+++++|.-++++|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4555555543211123445667889999999999999985
No 195
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=54.75 E-value=2.1e+02 Score=32.07 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHhhhcccCcChhHHHHHHHHhhhccCc---ccHH---HHHHHHHHHhhh----cChHhHHHHHHHHHHHH
Q 001845 352 AQIITSLKDPDISIRRRALDLLYGMCDV---SNAK---DIVEELLQYLST----ADFAMREELSLKAAILA 412 (1006)
Q Consensus 352 ~~i~~~L~d~D~sIr~~aL~lL~~l~n~---~Nv~---~Iv~eLl~yl~~----~d~~~~~~lv~~I~~la 412 (1006)
..++..+..+|.+|+.++..+|..+... .+.. .++..+++++.. .+.++..-.+..++.+.
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 3456678888999999999999888533 2333 677888888775 23344444555555543
No 196
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=54.75 E-value=53 Score=31.28 Aligned_cols=103 Identities=15% Similarity=0.247 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCc-HHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcc-cHH
Q 001845 307 MMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDV-HDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVS-NAK 383 (1006)
Q Consensus 307 l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~-~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~-Nv~ 383 (1006)
.+......+.+.|. ++.++.|..++-.+..|+.+.+- .+.+..-...+.......+. .+.+|-.|..++... +.+
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~ 80 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVD 80 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcccccc
Confidence 45556677788787 77889999999999999987542 24455555555555554443 678999999998777 777
Q ss_pred HHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcC
Q 001845 384 DIVEELLQYLSTADFAMREELSLKAAILAEKFA 416 (1006)
Q Consensus 384 ~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~ 416 (1006)
.+=++..+++...+. +...+..++++|.
T Consensus 81 ~lp~~~~~~l~~~~~-----l~~~L~~l~~~~~ 108 (121)
T PF12397_consen 81 SLPRKVFKALLKLPD-----LIELLSELSEKYD 108 (121)
T ss_pred cCCHHHHHHHHcCcc-----HHHHHHHHHhcCC
Confidence 666666666665433 4555566666664
No 197
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=54.61 E-value=7.5e+02 Score=34.12 Aligned_cols=101 Identities=12% Similarity=0.233 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHH
Q 001845 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRR 368 (1006)
Q Consensus 289 aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~ 368 (1006)
.+--|.|..+-.+-.+. --..++..|..++. .++.+.-..|++|..|--.. +...+-+..++.+|..-+...==-
T Consensus 207 ~lq~eiI~~LPeIl~ds-~h~~v~~~L~~ll~-~~~~L~~~iLd~Ls~L~Ls~---~~l~~vr~~vl~~L~s~~~e~LP~ 281 (1426)
T PF14631_consen 207 ELQKEIISSLPEILDDS-QHDEVVEELLELLQ-ENPELTVPILDALSNLNLSP---ELLEEVREKVLEKLSSVDLEDLPV 281 (1426)
T ss_dssp TTHHHHHHTHHHHS-GG-GHHHHHHHHHHHHH-H-STTHHHHHHHHHHS---H---HHHHHHHHHHHHSTTSS-TTHHHH
T ss_pred HHHHHHHHHHHHHhcch-hHHHHHHHHHHHHh-cCCchhhhHHHHHhcCCCCH---HHHHHHHHHHHHHHhcCChhhhHH
Confidence 34455555555543222 23456778888775 45778888899998887643 344555666777776433322223
Q ss_pred HHHHhhhccCcccHHHHHHHHHHHhh
Q 001845 369 ALDLLYGMCDVSNAKDIVEELLQYLS 394 (1006)
Q Consensus 369 aL~lL~~l~n~~Nv~~Iv~eLl~yl~ 394 (1006)
-+..|+.-++.+|+.++|.+|.+.+.
T Consensus 282 lirFLL~s~t~~da~evI~~LR~~L~ 307 (1426)
T PF14631_consen 282 LIRFLLQSITPSDAVEVISELRENLD 307 (1426)
T ss_dssp HHHHHHHS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHcc
Confidence 45567778899999999999988764
No 198
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=3.7e+02 Score=30.27 Aligned_cols=245 Identities=14% Similarity=0.143 Sum_probs=117.7
Q ss_pred HhHHHhhhcccCcChhHHHHHHHHhhhc---cCcccHH--------HHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCC
Q 001845 349 RHQAQIITSLKDPDISIRRRALDLLYGM---CDVSNAK--------DIVEELLQYLSTADFAMREELSLKAAILAEKFAP 417 (1006)
Q Consensus 349 ~~~~~i~~~L~d~D~sIr~~aL~lL~~l---~n~~Nv~--------~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~ 417 (1006)
++..++-.-|..+|-++|..++.-+..+ ||.+-|. +|.+.+++|+-..|+++....+..|.+++. |+.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHH
Confidence 3444444556667777777776655444 3333333 355577788888899999888888888762 321
Q ss_pred ChhhHH------HH-HHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHH-HHHHHhhcC--CchhhHHHHH-H---Hhh
Q 001845 418 DLSWYV------DV-ILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAA-AKAREYLDK--PAIHETMVKV-S---AYL 483 (1006)
Q Consensus 418 ~~~w~v------d~-ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~-~~l~~~L~~--~~~~e~l~k~-~---~wi 483 (1006)
..+-.. |+ +.+|-....+.+.--+..-|+.|..-.|+.-.|+- .-|.+.|+. ....+.++.+ + .+-
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 111100 00 01111122233333444555555555554333321 123333321 0112223221 1 222
Q ss_pred hccccccccCCCCCChHHHHHHHHhhCC--CCChhHHHHHHHHHHHHHhhcCCC--Chh-HHHH----HHHHHHHhccCC
Q 001845 484 LGEYSHLLARRPGCSPKEIFSIIHEKLP--TVSMSTVAILLSTYAKILMHTQPA--DPE-LQNQ----IWAIFNKYESCI 554 (1006)
Q Consensus 484 lGEyg~~i~~~~~~~~~~~~~~l~~~~~--~~s~~tr~~iLta~~Kl~~~~~~~--~~e-~~~~----v~~vl~~~~~s~ 554 (1006)
+.|--|-- ..+.-.-+++.+.+-+. ..++-.+.-.|.-+.|+|-+..-- .|+ +.+. |...|+. ..+.
T Consensus 241 LaeteHgr---eflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEm-iEmn 316 (524)
T KOG4413|consen 241 LAETEHGR---EFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEM-IEMN 316 (524)
T ss_pred HHHHhhhh---hhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHh-hhcC
Confidence 22211100 01111234555555443 344555665677788865442110 122 2222 2233332 3678
Q ss_pred ChHHHHHHHHHHHHhcc-hHHHHHhhhcCCCCCccchhHhhhhhhccc
Q 001845 555 EVEIQQRAVEYFALSRK-GAALMDILAEMPKFPERQSSLIKKAEDVEV 601 (1006)
Q Consensus 555 d~EvqqRA~eyl~Ll~~-~~~~~~vl~~mP~~~~~~~~ll~~l~~~~~ 601 (1006)
|++.+.-|.--+.++.. -+=.+.++.--||-.+ .++.|.++...
T Consensus 317 DpdaieaAiDalGilGSnteGadlllkTgppaae---hllarafdqna 361 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTEGADLLLKTGPPAAE---HLLARAFDQNA 361 (524)
T ss_pred CchHHHHHHHHHHhccCCcchhHHHhccCChHHH---HHHHHHhcccc
Confidence 99999999998888865 3444455555553322 56667665543
No 199
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=53.55 E-value=98 Score=33.78 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=71.6
Q ss_pred HHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHH
Q 001845 108 AINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADR 187 (1006)
Q Consensus 108 viNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~ 187 (1006)
.||+|-.-+......+|.-+=-++|.+.++.-++.+..-+.. -..+|+||--|+-||..+- .++-.+.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d----~~E~pMVRhEaAeALGaIa--------~e~~~~v 255 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD----ETEHPMVRHEAAEALGAIA--------DEDCVEV 255 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh----hhcchHHHHHHHHHHHhhc--------CHHHHHH
Confidence 678888889988999999999999999998777666655443 3579999999999988653 2466788
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHH
Q 001845 188 MAQLLDERDLGVLTSSMSLLVALV 211 (1006)
Q Consensus 188 l~~lL~d~d~~V~~~a~~ll~~I~ 211 (1006)
|++.+.|.++.|.-++...|.-+-
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 899999988888777665554433
No 200
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=53.31 E-value=5.1e+02 Score=31.77 Aligned_cols=321 Identities=16% Similarity=0.179 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHH---HHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcCh-
Q 001845 140 AESLAPDVQKLIISSSCRPLVRKKAALCL---LRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNH- 215 (1006)
Q Consensus 140 ~~~l~~~V~~~l~s~~~~~~VRKkA~lal---~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~- 215 (1006)
...+...+.++|+ ++.|.||..|+-.+ .++++.+.+.-....+-..+.+-|.+.+|-|+.+.+.+++.|.....
T Consensus 602 l~~ivStiL~~L~--~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 602 LSMIVSTILKLLR--SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred hHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence 4566677788887 57899999988654 45555555533222455677778888999999999998888775321
Q ss_pred h----hhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHH
Q 001845 216 E----AYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVL 291 (1006)
Q Consensus 216 ~----~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl 291 (1006)
. ....++|.+ .|.+ +. ....+...-.+++.
T Consensus 680 ~~mqpPi~~ilP~l------------tPIL--------rn----kh~Kv~~nti~lvg---------------------- 713 (975)
T COG5181 680 RSMQPPISGILPSL------------TPIL--------RN----KHQKVVANTIALVG---------------------- 713 (975)
T ss_pred cccCCchhhccccc------------cHhh--------hh----hhHHHhhhHHHHHH----------------------
Confidence 0 111222221 1111 10 00000000012222
Q ss_pred HHHHHHHHhcCCc----HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHH-
Q 001845 292 FEALALVMHLDAE----KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIR- 366 (1006)
Q Consensus 292 ~eai~~i~~l~~~----~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr- 366 (1006)
+|+...++ .+-+..|...+ ..|.+-+.++|--|-+++-.|+..-+..+ -...+++-|+-.+..-|
T Consensus 714 -----~I~~~~peyi~~rEWMRIcfeLv-d~Lks~nKeiRR~A~~tfG~Is~aiGPqd----vL~~LlnnLkvqeRq~Rv 783 (975)
T COG5181 714 -----TICMNSPEYIGVREWMRICFELV-DSLKSWNKEIRRNATETFGCISRAIGPQD----VLDILLNNLKVQERQQRV 783 (975)
T ss_pred -----HHHhcCcccCCHHHHHHHHHHHH-HHHHHhhHHHHHhhhhhhhhHHhhcCHHH----HHHHHHhcchHHHHHhhh
Confidence 22222221 22333333333 23334445555555555555544221111 11223344443333322
Q ss_pred --HHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcC---Ccc-hHH
Q 001845 367 --RRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAG---DFV-SDD 440 (1006)
Q Consensus 367 --~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g---~~v-~~e 440 (1006)
..|+.+.-..|-.=| ++..|+.--+..+..++.-+..+++-.-|..-....-||-.+..||..+- |.+ .+.
T Consensus 784 ctsvaI~iVae~cgpfs---VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqt 860 (975)
T COG5181 784 CTSVAISIVAEYCGPFS---VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQT 860 (975)
T ss_pred hhhhhhhhhHhhcCchh---hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHH
Confidence 235555555565554 34455554455566677777777777776665666778888888888762 333 334
Q ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHhhcC----CchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCCh
Q 001845 441 IWFRVVQFVTNNED-LQPYAAAKAREYLDK----PAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSM 515 (1006)
Q Consensus 441 i~~~i~~ii~~~~~-l~~~a~~~l~~~L~~----~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~ 515 (1006)
..+.|.+++-|.|. -++-+.-+|+++|-- +..| .++..--.+--++.- .++.-+..++....+.-+.
T Consensus 861 a~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPh--vi~~~~Eg~e~~~~~------lg~g~~m~Yv~qGLFHPs~ 932 (975)
T COG5181 861 AMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPH--VIQSFDEGMESFATV------LGSGAMMKYVQQGLFHPSS 932 (975)
T ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcH--HHHHHHHHHHHHHHH------hccHHHHHHHHHhccCchH
Confidence 55566777777664 355677777776642 2111 111111111112211 1234456666666666666
Q ss_pred hHHHHHHHHHHHHH
Q 001845 516 STVAILLSTYAKIL 529 (1006)
Q Consensus 516 ~tr~~iLta~~Kl~ 529 (1006)
.||-..-|.+--+|
T Consensus 933 ~VRk~ywtvyn~my 946 (975)
T COG5181 933 TVRKRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHHHHhhhh
Confidence 66665555544443
No 201
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=52.77 E-value=3.2e+02 Score=29.32 Aligned_cols=141 Identities=12% Similarity=-0.010 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHh--HHHHHHHHHH-------HHhcCCCChhHHHHHHHHHHHHHh
Q 001845 103 DFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREF--AESLAPDVQK-------LIISSSCRPLVRKKAALCLLRLYR 173 (1006)
Q Consensus 103 e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~--~~~l~~~V~~-------~l~s~~~~~~VRKkA~lal~~l~~ 173 (1006)
+...+++.++..=...+....+..+++-++.+...+- .+.+.+.+.. ...+.+....+.-..+.++.-+++
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~ 113 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC 113 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 4444555555443444444445666666666544211 1222222222 111122333344444677888999
Q ss_pred hCCCccccCcHHHHHHhhh-cCCChhHHHHHHHHHHHHHhcCh----hhhhccCCCCCCCccccccCCCChhHHHHHHHH
Q 001845 174 KNPDVVNVDGWADRMAQLL-DERDLGVLTSSMSLLVALVSNNH----EAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRA 248 (1006)
Q Consensus 174 ~~p~~v~~~~~~~~l~~lL-~d~d~~V~~~a~~ll~~I~~~~~----~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrl 248 (1006)
..|+.- .+++..|..+| ++.+..+...++-.+..+|+.+- ..|+-+.+++ .. ...|-..-.+.++
T Consensus 114 ~~p~~g--~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l--~~------~~rp~v~~~l~~l 183 (234)
T PF12530_consen 114 SRPDHG--VDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL--SL------DYRPLVLKSLCSL 183 (234)
T ss_pred hChhhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc--CC------ccchHHHHHHHHH
Confidence 999944 48899999999 78889999999999999997652 2344444444 11 2255555545555
Q ss_pred HhcCC
Q 001845 249 LQYFP 253 (1006)
Q Consensus 249 L~~~~ 253 (1006)
+..++
T Consensus 184 ~~l~~ 188 (234)
T PF12530_consen 184 FALVP 188 (234)
T ss_pred HHHhc
Confidence 55444
No 202
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=52.58 E-value=1e+02 Score=33.58 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=48.2
Q ss_pred HHHHHHhhcCCC--ChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC
Q 001845 108 AINTVRNDIIGR--NETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKN 175 (1006)
Q Consensus 108 viNsl~KDL~s~--n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~ 175 (1006)
+|.++.|-|.+. +|++|+.|..+||.|++++-.+.| ++.+. |..+.||+.+..++=-+-..+
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~vL----~e~~~--D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVEVL----KEYLG--DEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHHHH----HHHcC--CcHHHHHHHHHHHHHHHHHhc
Confidence 488888888774 689999999999999998766554 44453 789999999999985444444
No 203
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=52.43 E-value=55 Score=37.92 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=88.4
Q ss_pred ccCCCcCchhhhHHHHHhhcccChh--------HHHHHHHHHHhhcCCCChhHHhHHHHhh---hcC--CCHHhHHHHHH
Q 001845 79 ISAPKYPEKQVGYIVTSCLLNENHD--------FLRLAINTVRNDIIGRNETFQCLALTMV---GNI--GGREFAESLAP 145 (1006)
Q Consensus 79 ~~S~~~~~KrlgYL~l~~l~~~~~e--------~~~LviNsl~KDL~s~n~~~~~lAL~~l---~~i--~~~e~~~~l~~ 145 (1006)
+=+++-+.+-.||=.+..+...... +-.+++=++.||..+ +..|--||+.+ -.+ +..++-..+..
T Consensus 34 lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 3334477888899888777765432 345677788887654 56666666665 345 45677788888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 001845 146 DVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALV 211 (1006)
Q Consensus 146 ~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~ 211 (1006)
.|..+.. +.+.-.|..|+-++.-+.-.+|+++...+=+..+.+.+-|....+.-+.+..+..+.
T Consensus 112 alvaiae--~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 112 ALVAIAE--HEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 8888886 567779999999999999999998833233455555565555555555555666555
No 204
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=52.41 E-value=5.8e+02 Score=32.13 Aligned_cols=75 Identities=12% Similarity=0.063 Sum_probs=51.0
Q ss_pred CHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC-CccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 001845 136 GREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP-DVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVS 212 (1006)
Q Consensus 136 ~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p-~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~ 212 (1006)
...+.......+...+.-......+|.+.=..+.|+...-. +.++ -....+..+|+|.|+-=+.--+.++..+..
T Consensus 689 ~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlP--fipklie~lL~s~d~kEmvdfl~flsQLih 764 (980)
T KOG2021|consen 689 NMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLP--FIPKLIELLLSSTDLKEMVDFLGFLSQLIH 764 (980)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhc--chHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34444555555555555445778899999999999987654 4443 344555567789998877777888877664
No 205
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=52.19 E-value=1.8e+02 Score=32.64 Aligned_cols=166 Identities=13% Similarity=0.107 Sum_probs=87.0
Q ss_pred CCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhccc----CcChhHHHHHHHHhhhccCcccHHHHHHHHHHH-----
Q 001845 322 REPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK----DPDISIRRRALDLLYGMCDVSNAKDIVEELLQY----- 392 (1006)
Q Consensus 322 ~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~----d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~y----- 392 (1006)
.+..++|-.|-.+-.+.-...-.+.|+++.+.|..++. +.-.-|-|.-+-++..+|+.+--+.|-.-|+..
T Consensus 205 g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~ 284 (432)
T COG5231 205 GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKC 284 (432)
T ss_pred hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHH
Confidence 46789999998888776643212334555544443333 222235555666777777754223333222221
Q ss_pred ---h---hhcChHhHHHHHHHHHHHHhhcC--CChhhHHHHH-HHHHHhcCCcchHHHHHHHHHHH-hcCCCcHHHHHHH
Q 001845 393 ---L---STADFAMREELSLKAAILAEKFA--PDLSWYVDVI-LQLIDKAGDFVSDDIWFRVVQFV-TNNEDLQPYAAAK 462 (1006)
Q Consensus 393 ---l---~~~d~~~~~~lv~~I~~laeky~--~~~~w~vd~l-l~ll~~~g~~v~~ei~~~i~~ii-~~~~~l~~~a~~~ 462 (1006)
+ ..+|.+++.++-.--.++.+.|- ..+.-|+.-+ -.++.-+..+.+++.|+.=.+-+ .++- ..+++
T Consensus 285 vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny----~i~k~ 360 (432)
T COG5231 285 VQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNY----EIVKV 360 (432)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhH----HHHHH
Confidence 1 12677777665332234444332 2222344333 23344455679999999654433 2221 26778
Q ss_pred HHHhhcCCchhhHHHHHHHhhhcccccccc
Q 001845 463 AREYLDKPAIHETMVKVSAYLLGEYSHLLA 492 (1006)
Q Consensus 463 l~~~L~~~~~~e~l~k~~~wilGEyg~~i~ 492 (1006)
|.++++...-+ ..+++++.=+|.|....+
T Consensus 361 L~~~lq~n~~n-t~i~vAc~Di~~~Vr~~P 389 (432)
T COG5231 361 LKKYLQSNNPN-TWICVACSDIFQLVRASP 389 (432)
T ss_pred HHHHHhcCCCC-ceEeeeHhhHHHHHHhCc
Confidence 88888754322 345556666666655443
No 206
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=52.08 E-value=4.5e+02 Score=30.75 Aligned_cols=232 Identities=13% Similarity=0.192 Sum_probs=112.8
Q ss_pred HHHHHHHhcCCcHH--HHHHHHHHHHHhh-cC-CCCchhHHHHHHHHHHHccCCcHHHHHH--hHHHhhhcccCc-ChhH
Q 001845 293 EALALVMHLDAEKE--MMSQCIALLGKFI-AV-REPNIRYLGLENMTRMLMVTDVHDIIKR--HQAQIITSLKDP-DISI 365 (1006)
Q Consensus 293 eai~~i~~l~~~~~--l~~~~~~~L~~fL-~s-~~~nirylaL~~L~~l~~~~~~~~~v~~--~~~~i~~~L~d~-D~sI 365 (1006)
.|...++.++.-.. .....++.|...+ ++ -+..++|-.+-++-.|.-..+..+.++. -...+...+++. -.-|
T Consensus 179 rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV 258 (442)
T KOG2759|consen 179 RCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKV 258 (442)
T ss_pred HHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 36666666654211 1112234444444 32 3567788888887777654221111110 111222223221 1123
Q ss_pred HHHHHHHhhhccCcccHHHHHH----HH-----H---HHhh---hcChHhHHHHHHHHHHHHhhcC--CChhhH-HHHHH
Q 001845 366 RRRALDLLYGMCDVSNAKDIVE----EL-----L---QYLS---TADFAMREELSLKAAILAEKFA--PDLSWY-VDVIL 427 (1006)
Q Consensus 366 r~~aL~lL~~l~n~~Nv~~Iv~----eL-----l---~yl~---~~d~~~~~~lv~~I~~laeky~--~~~~w~-vd~ll 427 (1006)
-|..+-++..+++..-.+..-+ .+ + +.|. .+|.++..++..--..|-+.+- ..+.-| =..-.
T Consensus 259 ~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~s 338 (442)
T KOG2759|consen 259 TRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRS 338 (442)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3334444445555442211111 11 1 1121 2466665554433333333221 222222 22223
Q ss_pred HHHHhcCCcchHHHHHHHHH-HHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHH---
Q 001845 428 QLIDKAGDFVSDDIWFRVVQ-FVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIF--- 503 (1006)
Q Consensus 428 ~ll~~~g~~v~~ei~~~i~~-ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~--- 503 (1006)
..|.=+.-+.++..|..=.+ +..++ . ..++.|..+|+...-+ ..+.+|++=+|||....++... -.+..
T Consensus 339 G~L~WSP~Hk~e~FW~eNa~rlnenn---y-ellkiL~~lLe~s~Dp-~iL~VAc~DIge~Vr~yP~gk~--vv~k~ggK 411 (442)
T KOG2759|consen 339 GRLEWSPVHKSEKFWRENADRLNENN---Y-ELLKILIKLLETSNDP-IILCVACHDIGEYVRHYPEGKA--VVEKYGGK 411 (442)
T ss_pred CCcCCCccccccchHHHhHHHHhhcc---H-HHHHHHHHHHhcCCCC-ceeehhhhhHHHHHHhCchHhH--HHHHhchH
Confidence 33333455778888875333 32222 2 2677788888764322 3567789999999887765211 11111
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHHHhh
Q 001845 504 SIIHEKLPTVSMSTVAILLSTYAKILMH 531 (1006)
Q Consensus 504 ~~l~~~~~~~s~~tr~~iLta~~Kl~~~ 531 (1006)
..+.+....++++||-.+|.|.-|+-.+
T Consensus 412 e~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 412 ERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 2345556789999999999999986543
No 207
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.87 E-value=3.6e+02 Score=29.66 Aligned_cols=120 Identities=14% Similarity=0.201 Sum_probs=71.6
Q ss_pred HHHHHHHHH---HHhhc-CCC-CchhHHHHHHHHHHHccCCcHHHHHHhHHHh--hhcccCcChhHHHHHHHHhhhccCc
Q 001845 307 MMSQCIALL---GKFIA-VRE-PNIRYLGLENMTRMLMVTDVHDIIKRHQAQI--ITSLKDPDISIRRRALDLLYGMCDV 379 (1006)
Q Consensus 307 l~~~~~~~L---~~fL~-s~~-~nirylaL~~L~~l~~~~~~~~~v~~~~~~i--~~~L~d~D~sIr~~aL~lL~~l~n~ 379 (1006)
.++++.+.+ ++... +.+ .++|+.+|+.|.+..-..+..+.+.+....+ +.--..+.+.+...+|+++.+..+.
T Consensus 58 wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~ 137 (278)
T PF08631_consen 58 WLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE 137 (278)
T ss_pred HHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh
Confidence 455666665 33322 233 3788888888877765443334444433322 1122244577888999999997777
Q ss_pred ccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 001845 380 SNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVIL 427 (1006)
Q Consensus 380 ~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll 427 (1006)
+-+..++..++..+...+..|. .++..|..+.++-++...-+++.++
T Consensus 138 ~~~~~~L~~mi~~~~~~e~~~~-~~l~~i~~l~~~~~~~a~~~ld~~l 184 (278)
T PF08631_consen 138 EEYEEILMRMIRSVDHSESNFD-SILHHIKQLAEKSPELAAFCLDYLL 184 (278)
T ss_pred hHHHHHHHHHHHhcccccchHH-HHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 7777777777776665555554 3456666677665555445554444
No 208
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=51.50 E-value=3.2e+02 Score=29.82 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=86.9
Q ss_pred hHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcC---hHhH-----HHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcC-
Q 001845 364 SIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAD---FAMR-----EELSLKAAILAEKFAPDLSWYVDVILQLIDKAG- 434 (1006)
Q Consensus 364 sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d---~~~~-----~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g- 434 (1006)
..=+.||+-.. .+.+.|+.+|+..+..+- .++. .-.+.++..|++. ...-....++++++..+
T Consensus 16 ~~P~~al~~A~-----~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~---re~~A~~~li~l~~~~~~ 87 (249)
T PF06685_consen 16 EFPREALEAAI-----EQREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF---REERALPPLIRLFSQDDD 87 (249)
T ss_pred cCcHHHHHHHH-----HCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH---hhhhhHHHHHHHHcCCcc
Confidence 34445555544 266778888888887521 1221 1246677777764 22455677888887654
Q ss_pred -------CcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHHHHHHHh----hhccccccccCCCCCChHHHH
Q 001845 435 -------DFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAY----LLGEYSHLLARRPGCSPKEIF 503 (1006)
Q Consensus 435 -------~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~w----ilGEyg~~i~~~~~~~~~~~~ 503 (1006)
|.+.++.+..+..+...++ ..+.++++++...+ .+|.+++ .+...|. .+..+++
T Consensus 88 ~~~~l~GD~~tE~l~~ilasv~~G~~-------~~L~~li~~~~~~~-yvR~aa~~aL~~l~~~~~-------~~Re~vi 152 (249)
T PF06685_consen 88 FLEDLFGDFITEDLPRILASVGDGDI-------EPLKELIEDPDADE-YVRMAAISALAFLVHEGP-------ISREEVI 152 (249)
T ss_pred hHHHHHcchhHhHHHHHHHHHhCCCH-------HHHHHHHhCCcHHH-HHHHHHHHHHHHHHHcCC-------CCHHHHH
Confidence 5556666555555443332 45566677765443 3443222 1222222 2233444
Q ss_pred HH---HHhh-CCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc
Q 001845 504 SI---IHEK-LPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYES 552 (1006)
Q Consensus 504 ~~---l~~~-~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~ 552 (1006)
++ +.+. .......+-..++.+++-|+. .|+.+.|.++|+.-.-
T Consensus 153 ~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~------~EL~~~I~~~f~~~lV 199 (249)
T PF06685_consen 153 QYFRELLNYFLERNPSFLWGSLVADICDLYP------EELLPEIRKAFEDGLV 199 (249)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhcCH------HHhHHHHHHHHHcCCC
Confidence 33 3333 333344456677777777433 3788889999986543
No 209
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=51.34 E-value=64 Score=37.15 Aligned_cols=124 Identities=19% Similarity=0.289 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhcC-CC----hhhHHHHHHHHHHhcC-CcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchhhHH
Q 001845 403 ELSLKAAILAEKFA-PD----LSWYVDVILQLIDKAG-DFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETM 476 (1006)
Q Consensus 403 ~lv~~I~~laeky~-~~----~~w~vd~ll~ll~~~g-~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l 476 (1006)
|+..-++.+..-|+ |- .-..+.+++.|-+.++ .....+.-+.++|++.+++.+.+.++..+.+|--....+..
T Consensus 238 ELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KE- 316 (457)
T KOG2085|consen 238 ELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKE- 316 (457)
T ss_pred HHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcce-
Confidence 44444556666665 21 2245566666655543 34667788888999999999999888888887654333221
Q ss_pred HHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCCh
Q 001845 477 VKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEV 556 (1006)
Q Consensus 477 ~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~ 556 (1006)
+-+|||-++.+ +.+.. . -+-| +..-+-..+.+|.+|.+.
T Consensus 317 ----VmFL~ElEEIL------------e~iep------~--------eFqk-----------~~~PLf~qia~c~sS~HF 355 (457)
T KOG2085|consen 317 ----VMFLNELEEIL------------EVIEP------S--------EFQK-----------IMVPLFRQIARCVSSPHF 355 (457)
T ss_pred ----eeeHhhHHHHH------------HhcCH------H--------HHHH-----------HhHHHHHHHHHHcCChhH
Confidence 34567754433 22211 0 0111 122344455678899999
Q ss_pred HHHHHHHHHHHH
Q 001845 557 EIQQRAVEYFAL 568 (1006)
Q Consensus 557 EvqqRA~eyl~L 568 (1006)
-|-+||.+||+.
T Consensus 356 QVAEraL~~wnN 367 (457)
T KOG2085|consen 356 QVAERALYLWNN 367 (457)
T ss_pred HHHHHHHHHHhh
Confidence 999999999885
No 210
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=51.31 E-value=2e+02 Score=30.43 Aligned_cols=139 Identities=13% Similarity=0.016 Sum_probs=78.1
Q ss_pred HHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcC
Q 001845 75 AVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISS 154 (1006)
Q Consensus 75 vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~ 154 (1006)
+-.|..++-++.+-+|-.++......-++-.+-.+-.+..+. +.=..+=++|-+.++.+.. --+.+...+.+...
T Consensus 51 ~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~--~~~~~~~~l~~W~~-- 125 (208)
T cd07064 51 VLELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLA--DYPEFEPVMDEWST-- 125 (208)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHh--CChhHHHHHHHHHc--
Confidence 445777777666666655444432221111111111122221 2223333444444443211 01222445566665
Q ss_pred CCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccC
Q 001845 155 SCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL 222 (1006)
Q Consensus 155 ~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v 222 (1006)
+.+.++||.|+++.++.-+. .+ . +.....+..++.|++.-|.-+.-=+|-++.+.+|+....++
T Consensus 126 s~~~W~rR~ai~~~l~~~~~-~~-~--~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 126 DENFWLRRTAILHQLKYKEK-TD-T--DLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred CCcHHHHHHHHHHHHHHHHc-cC-H--HHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 57899999999987774443 33 2 24556677788899888988888899999999987644443
No 211
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=50.20 E-value=6e+02 Score=32.00 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=53.1
Q ss_pred cChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcC------
Q 001845 361 PDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAG------ 434 (1006)
Q Consensus 361 ~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g------ 434 (1006)
.|..+|++|++.+-.+-...|+=+|.-|++-.=. .++.. || ||+.++.++++..-
T Consensus 17 vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~t-s~d~v-------------kf-----~clqtL~e~vrekyne~nl~ 77 (980)
T KOG2021|consen 17 VDSATKQQAIEYLNQIKSSPNAWEICIELLINET-SNDLV-------------KF-----YCLQTLIELVREKYNEANLN 77 (980)
T ss_pred ccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhc-ccchh-------------hh-----hhHHHHHHHHHHhhccCCHH
Confidence 4788999999999999888888888888776533 22222 22 77777777777653
Q ss_pred --CcchHHHHHHHHHHHhcCC
Q 001845 435 --DFVSDDIWFRVVQFVTNNE 453 (1006)
Q Consensus 435 --~~v~~ei~~~i~~ii~~~~ 453 (1006)
.+|.+++|.-++-.+-+++
T Consensus 78 elqlvR~sv~swlk~qvl~ne 98 (980)
T KOG2021|consen 78 ELQLVRFSVTSWLKFQVLGNE 98 (980)
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 3578888888876665554
No 212
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.07 E-value=6.6e+02 Score=31.83 Aligned_cols=317 Identities=17% Similarity=0.209 Sum_probs=172.0
Q ss_pred hccCCCcCchhhhHHHHHhhcccChh-HHH----HHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHh
Q 001845 78 LISAPKYPEKQVGYIVTSCLLNENHD-FLR----LAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLII 152 (1006)
Q Consensus 78 L~~S~~~~~KrlgYL~l~~l~~~~~e-~~~----LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~ 152 (1006)
+-.|+=++.||=+-+++.-+....-+ +.. =.|+++++|-. |+.+...||.+++++...+=. |.|.+
T Consensus 31 vessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~----~~v~d--- 101 (970)
T KOG0946|consen 31 VESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDS----PEVMD--- 101 (970)
T ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcc----hhhcc---
Confidence 44667789999999999999887544 332 46788888866 567888899988887664432 22221
Q ss_pred cCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCcccc
Q 001845 153 SSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYT 232 (1006)
Q Consensus 153 s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~ 232 (1006)
++. .-----+=+.-.|-+.+ +.+..+...++..|.+|-..++-|+..+.++.|...++++
T Consensus 102 --ds~--qsdd~g~~iae~fik~q------d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l---------- 161 (970)
T KOG0946|consen 102 --DST--QSDDLGLWIAEQFIKNQ------DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL---------- 161 (970)
T ss_pred --cch--hhhHHHHHHHHHHHcCc------hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH----------
Confidence 111 10011112233343444 5556778888889999999999999999999987777765
Q ss_pred ccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHH-HHHHh-cCCc-----H
Q 001845 233 YYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEAL-ALVMH-LDAE-----K 305 (1006)
Q Consensus 233 ~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai-~~i~~-l~~~-----~ 305 (1006)
...|-...+++.+|.--.. + ++..-.-.|..+... +.+.+--|.||-+ .-++. +..+ .
T Consensus 162 ---l~~P~gIS~lmdlL~DsrE---~-IRNe~iLlL~eL~k~--------n~~IQKlVAFENaFerLfsIIeeEGg~dGg 226 (970)
T KOG0946|consen 162 ---LVSPMGISKLMDLLRDSRE---P-IRNEAILLLSELVKD--------NSSIQKLVAFENAFERLFSIIEEEGGLDGG 226 (970)
T ss_pred ---HHCchhHHHHHHHHhhhhh---h-hchhHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 2478889999999974211 1 111111112222211 1123445555522 11111 1111 0
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHH----HHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCccc
Q 001845 306 EMMSQCIALLGKFIAVREPNIRYLG----LENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSN 381 (1006)
Q Consensus 306 ~l~~~~~~~L~~fL~s~~~niryla----L~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~N 381 (1006)
-.+.-|.-.|..+|..+..|-.|.- +-.|.+|..... +..- .++ -..+.-..---.+|+++-.++.++|
T Consensus 227 IVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~----~~d~--Ev~-~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 227 IVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFE----FGDG--EVF-GWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred chHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccc----ccCc--ccc-cccHHHHHHHHHHHHHHHHhcCCCC
Confidence 1334455555555544444433321 111122211100 0000 000 0001112233357788888888888
Q ss_pred HHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCC--cchHHHHHHHHHHHhcCCCcHHHH
Q 001845 382 AKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGD--FVSDDIWFRVVQFVTNNEDLQPYA 459 (1006)
Q Consensus 382 v~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~--~v~~ei~~~i~~ii~~~~~l~~~a 459 (1006)
-..+...--+-+. ....++++..++...|- -|-.+.|..+..+|+.+..-|.+.
T Consensus 300 t~~~~~q~qk~l~------------------------ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F 355 (970)
T KOG0946|consen 300 TSSITHQNQKALV------------------------SSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEF 355 (970)
T ss_pred cHHHHHHHHHHHH------------------------HcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHH
Confidence 7777654322221 12334444444444441 156677888888888888777776
Q ss_pred HHHHHHhhcC
Q 001845 460 AAKAREYLDK 469 (1006)
Q Consensus 460 ~~~l~~~L~~ 469 (1006)
+...+.+..+
T Consensus 356 ~~v~~p~~~~ 365 (970)
T KOG0946|consen 356 ADVTAPSIPN 365 (970)
T ss_pred hhccCCCCCC
Confidence 6665555554
No 213
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.64 E-value=5.4e+02 Score=30.72 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=63.2
Q ss_pred cCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhc----cc-CcChhHHHHHHHHhhhccCccc-------HHHHHH
Q 001845 320 AVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITS----LK-DPDISIRRRALDLLYGMCDVSN-------AKDIVE 387 (1006)
Q Consensus 320 ~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~----L~-d~D~sIr~~aL~lL~~l~n~~N-------v~~Iv~ 387 (1006)
.+++.-+|-.+++.|..++.-.| +.+..|..+++.. |. +.+..+...++..|..+.-.-. ...|..
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P--~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAP--DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCc--HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 34555788889999998888644 5788887766543 33 5556788888877765542221 134555
Q ss_pred HHHHHhhhcChHhHHHHHHHHHHHHhhcC
Q 001845 388 ELLQYLSTADFAMREELSLKAAILAEKFA 416 (1006)
Q Consensus 388 eLl~yl~~~d~~~~~~lv~~I~~laeky~ 416 (1006)
.+..+....++++|-..+...+.|+ +|+
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~-~l~ 373 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALA-KLA 373 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHH-HHc
Confidence 6666777788888888887777776 454
No 214
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=48.17 E-value=30 Score=35.47 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=34.2
Q ss_pred CchhHHHHHHHHHHHccCCcHHHHH---HhHHHhhhcccCcChhHHHHHHHHhhhcc
Q 001845 324 PNIRYLGLENMTRMLMVTDVHDIIK---RHQAQIITSLKDPDISIRRRALDLLYGMC 377 (1006)
Q Consensus 324 ~nirylaL~~L~~l~~~~~~~~~v~---~~~~~i~~~L~d~D~sIr~~aL~lL~~l~ 377 (1006)
..+.+..|.+|..|+......+.+- .....|..||..++..+|..++++|..+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3455666666655554332222222 23456788999999999999999999887
No 215
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=48.03 E-value=1.2e+02 Score=29.47 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHH
Q 001845 163 KAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQ 242 (1006)
Q Consensus 163 kA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlq 242 (1006)
.+++.+.-+.+..++.-. +.+..|.+-|..+|+.|+.-|+.++..+.++-...|+..+.. ..|+.
T Consensus 19 ~~il~icd~I~~~~~~~k--~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-------------~~fl~ 83 (133)
T cd03561 19 ALNLELCDLINLKPNGPK--EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-------------KEFLL 83 (133)
T ss_pred HHHHHHHHHHhCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-------------HHHHH
Confidence 445555555555554443 667788888888999999999999999998877767655421 35665
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q 001845 243 VKTMRALQYFPTVEDPNTRRSLFEVLQRIL 272 (1006)
Q Consensus 243 vklLrlL~~~~~~~d~~~~~~l~~~l~~il 272 (1006)
- +++++..- +..++++.+++.+++...-
T Consensus 84 ~-l~~l~~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 84 E-LVKIAKNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred H-HHHHhCCC-CCCCHHHHHHHHHHHHHHH
Confidence 5 66766532 1236677777777777654
No 216
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.96 E-value=1.4e+02 Score=38.04 Aligned_cols=245 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred CChhHHhHHHHhhhcCCC-------HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC-----CCccccCcHHH
Q 001845 119 RNETFQCLALTMVGNIGG-------REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKN-----PDVVNVDGWAD 186 (1006)
Q Consensus 119 ~n~~~~~lAL~~l~~i~~-------~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~-----p~~v~~~~~~~ 186 (1006)
.|..-.|.+|..|+.+.. +++..++.+-+.++. +.+++|+.-|--|+.++.+.. |..+. .=.+
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a---~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~--en~D 634 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLA---SPSEAISQVAQSCALRIADALNYGSPPHLIR--ENVD 634 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHcCCCChHHHHH--hhhH
Q ss_pred HHHhhhc--CCChhHHHHHHHHHHHHHhcC----hhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCCC-CChh
Q 001845 187 RMAQLLD--ERDLGVLTSSMSLLVALVSNN----HEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTV-EDPN 259 (1006)
Q Consensus 187 ~l~~lL~--d~d~~V~~~a~~ll~~I~~~~----~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~-~d~~ 259 (1006)
.+..-|. ++..++--.+--.+.-+++.. -..+..++..+--.-|| ||+.++.=....+.-++..+... .|..
T Consensus 635 Ylv~sla~~L~~~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~-yH~~~~~~~~~ll~s~ik~~~~~~~~~~ 713 (1014)
T KOG4524|consen 635 YLVNSLALRLNTSGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDY-YHGYSCLQFFQLLHSIIKEMKKKYINDE 713 (1014)
T ss_pred HHHHHHHHHhccCCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHhhccccch
Q ss_pred hHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcC-------------------------------------
Q 001845 260 TRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLD------------------------------------- 302 (1006)
Q Consensus 260 ~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~------------------------------------- 302 (1006)
....+.|.....-+ .+-|.-++-+.|-.+..-.+.
T Consensus 714 il~~~~d~~~~~~~--------k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens 785 (1014)
T KOG4524|consen 714 ILGHIADQHISQST--------KVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENS 785 (1014)
T ss_pred hhHHHHHHHHHHHH--------HHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCcccccc
Q ss_pred ----------CcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc-----cCCcHHHHHHhHHHhhhcccCcChhHHH
Q 001845 303 ----------AEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLM-----VTDVHDIIKRHQAQIITSLKDPDISIRR 367 (1006)
Q Consensus 303 ----------~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~-----~~~~~~~v~~~~~~i~~~L~d~D~sIr~ 367 (1006)
...++.......-..||++.+--+|.-+|+.|..-.. .+--...+.....-++.|+.++|+.+-.
T Consensus 786 ~~~d~ep~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~ 865 (1014)
T KOG4524|consen 786 EYTDTEPILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQ 865 (1014)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHH
Q ss_pred HHHHHhhhcc
Q 001845 368 RALDLLYGMC 377 (1006)
Q Consensus 368 ~aL~lL~~l~ 377 (1006)
+|+..++.||
T Consensus 866 ~a~~~i~~m~ 875 (1014)
T KOG4524|consen 866 RAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHHH
No 217
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=47.69 E-value=94 Score=35.57 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=67.7
Q ss_pred HHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhc----CCC---HHh-HHHHHHHH
Q 001845 76 VSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGN----IGG---REF-AESLAPDV 147 (1006)
Q Consensus 76 i~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~----i~~---~e~-~~~l~~~V 147 (1006)
.+.-.-.+-.++.=+-|-++-...+++|...=++-+|+|=|++.++++.-+||+.+.. ++. .|+ ...+...+
T Consensus 14 ~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 14 EKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred HHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 3444445566777777888888888899999999999999999999999999987754 333 344 36788888
Q ss_pred HHHHhcCCCChhHHHHH
Q 001845 148 QKLIISSSCRPLVRKKA 164 (1006)
Q Consensus 148 ~~~l~s~~~~~~VRKkA 164 (1006)
.+++.+ ...+-|++|-
T Consensus 94 ~al~~~-~~h~kV~~k~ 109 (462)
T KOG2199|consen 94 RALIES-KAHPKVCEKM 109 (462)
T ss_pred HHHHhh-cccHHHHHHH
Confidence 888875 5677787773
No 218
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=47.57 E-value=95 Score=29.35 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=37.1
Q ss_pred EEEEeecCCCCcceeEEEEeCCCceeEEeecCC-cccCCCCeeEEEEEEEecCCCCCCcEEEEEEee
Q 001845 768 VLFLGNKNTSPLFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKF 833 (1006)
Q Consensus 768 ~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~-~tI~p~~q~q~~v~v~~~~~~~~~P~l~i~y~~ 833 (1006)
.+.+.||+..+.+ |.+.+..++++++.. +.. -+|+||+.....+.|...........-.|.|.+
T Consensus 36 ~lkl~Nkt~~~~~-~~i~~~g~~~~~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v 100 (118)
T PF11614_consen 36 TLKLTNKTNQPRT-YTISVEGLPGAELQG-PENTITVPPGETREVPVFVTAPPDALKSGSTPITFTV 100 (118)
T ss_dssp EEEEEE-SSS-EE-EEEEEES-SS-EE-E-S--EEEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEE
T ss_pred EEEEEECCCCCEE-EEEEEecCCCeEEEC-CCcceEECCCCEEEEEEEEEECHHHccCCCeeEEEEE
Confidence 6678899999876 888888777888843 434 688999988888887773322123333555555
No 219
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=47.53 E-value=2.1e+02 Score=34.12 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=63.7
Q ss_pred HHHHHhhhccCcccHHHHHHHHHHH--h-------h------hcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001845 368 RALDLLYGMCDVSNAKDIVEELLQY--L-------S------TADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDK 432 (1006)
Q Consensus 368 ~aL~lL~~l~n~~Nv~~Iv~eLl~y--l-------~------~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~ 432 (1006)
+.+.=|..=+|.+|+..|+.||+.- + + .+.+.|-.....-++.+--|||...+..+.-++-.+..
T Consensus 166 ksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r 245 (739)
T KOG2140|consen 166 KSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKR 245 (739)
T ss_pred HHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence 3445556668999999999999862 1 1 12334555555555666678887766655544322332
Q ss_pred c---CCcchHHHHHHHHHHHhcCCCcHHHH-HHHHHHhhcCCch-----hhHHHHHHHhhhccccc
Q 001845 433 A---GDFVSDDIWFRVVQFVTNNEDLQPYA-AAKAREYLDKPAI-----HETMVKVSAYLLGEYSH 489 (1006)
Q Consensus 433 ~---g~~v~~ei~~~i~~ii~~~~~l~~~a-~~~l~~~L~~~~~-----~e~l~k~~~wilGEyg~ 489 (1006)
+ .+++.---+..++..+.|..-.|+.. ++.+.-+|++|.. --.++|.|+|-|.|-+.
T Consensus 246 ~f~RnDk~~c~~~~kfiahLinq~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSp 311 (739)
T KOG2140|consen 246 SFRRNDKVSCLNASKFIAHLINQQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSP 311 (739)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhCh
Confidence 2 23322222223333344444556654 3444445566532 12344445555555443
No 220
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=46.82 E-value=59 Score=32.72 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhcc
Q 001845 156 CRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSC 221 (1006)
Q Consensus 156 ~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~ 221 (1006)
..+-+|..|.+++.|++...++... +.+.+.+..++.+.+..-...++.++..+.+-.|+....+
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 5678999999999999988777665 4566777777776555566677777777776666554433
No 221
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.54 E-value=1.3e+02 Score=29.74 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=59.1
Q ss_pred hHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhh----cCCC---HHhH-HHHHHHHHHHHhc----CCCC
Q 001845 90 GYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVG----NIGG---REFA-ESLAPDVQKLIIS----SSCR 157 (1006)
Q Consensus 90 gYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~----~i~~---~e~~-~~l~~~V~~~l~s----~~~~ 157 (1006)
+-+-++-+.+.+++-..-++-.|+|=|+++|+.+.-+||..+- |.|. .+++ ..+..++.+++.. +..+
T Consensus 21 ~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~ 100 (139)
T cd03567 21 AIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS 100 (139)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC
Confidence 3344555556666666778899999999999999999987654 3443 3443 5666777777741 1357
Q ss_pred hhHHHHHHHHHHHHHhhCC
Q 001845 158 PLVRKKAALCLLRLYRKNP 176 (1006)
Q Consensus 158 ~~VRKkA~lal~~l~~~~p 176 (1006)
+-||+|.+..+..--..++
T Consensus 101 ~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 101 EKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8899998777655444444
No 222
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=46.07 E-value=93 Score=32.21 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=76.7
Q ss_pred chhhhHHHHHhhcccC---h-hHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCC--------------------------
Q 001845 86 EKQVGYIVTSCLLNEN---H-DFLRLAINTVRNDIIGRNETFQCLALTMVGNIG-------------------------- 135 (1006)
Q Consensus 86 ~KrlgYL~l~~l~~~~---~-e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~-------------------------- 135 (1006)
+||.-|=|+..++.+. + ....=....+ +.|+++-+|+.|+.+++.+-
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLlt~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~t 94 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLLTCI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSST 94 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchhHHH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHH
Confidence 5778888888888876 1 1111111234 34678999999999998642
Q ss_pred CHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC------CccccCcHHHHHHhhhcCCChhHHHHHHHHHHH
Q 001845 136 GREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP------DVVNVDGWADRMAQLLDERDLGVLTSSMSLLVA 209 (1006)
Q Consensus 136 ~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p------~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~ 209 (1006)
-..|+..+...+..++.. ..++-+---.+=|+.-+....| +++. .++..+..++.++|+.|..+++..+..
T Consensus 95 La~~i~~lH~~Ll~~L~~-E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~--~~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 95 LASMIMELHRGLLLALQA-EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT--EVVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHccCChhhcCHhHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 122344555555555553 3344443344444444444443 5553 677888889999999999999988887
Q ss_pred HHhc
Q 001845 210 LVSN 213 (1006)
Q Consensus 210 I~~~ 213 (1006)
+...
T Consensus 172 l~s~ 175 (182)
T PF13251_consen 172 LLSV 175 (182)
T ss_pred HHcC
Confidence 7653
No 223
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=45.69 E-value=3.1e+02 Score=33.80 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=33.6
Q ss_pred hHHHHHHHHhhCCCCC--hhHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccCCChHHHH
Q 001845 499 PKEIFSIIHEKLPTVS--MSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYESCIEVEIQQ 560 (1006)
Q Consensus 499 ~~~~~~~l~~~~~~~s--~~tr~~iLta~~Kl~~~~~~~~~e~~~~v~~vl~~~~~s~d~Evqq 560 (1006)
+..+...|.++|+... ..+...-+..+.+ +..-.|+++..|..++-.-.-..|+|+|-
T Consensus 160 ~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~----l~~Y~P~L~~~Il~lIi~rLi~iDVeiq~ 219 (563)
T PF05327_consen 160 PSFLIPILVQNFPHKRKSKDEHVNYVRNLLR----LTEYCPELRSDILSLIIERLIKIDVEIQI 219 (563)
T ss_dssp HHHHHHHHHHTS--TTS-HHHHHHHHHHHHH----HHCC-GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCCCChHHHHHHHHHHHH----HHcchHHHHHHHHHHHHHHHHHHhccccc
Confidence 5567778888887554 3344444445555 55556888887777665444455555554
No 224
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=45.63 E-value=61 Score=33.09 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=20.6
Q ss_pred HhHHHhhhcccCcChhHHHHHHHHhhhccC
Q 001845 349 RHQAQIITSLKDPDISIRRRALDLLYGMCD 378 (1006)
Q Consensus 349 ~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n 378 (1006)
.....++.-|.| +..||..+..+|.+++.
T Consensus 66 ~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~ 94 (169)
T PF08623_consen 66 EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQ 94 (169)
T ss_dssp HHHHHHHHTTSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC-cHHHHHHHHHHHHHHHH
Confidence 344556777877 78888888888888753
No 225
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=45.51 E-value=96 Score=34.42 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=66.4
Q ss_pred HHhhhcccCcChhHHHHHHHHhhhccCcccHHH---------------HHHHHHHHhhh-----cChHhHHHHHHHHHHH
Q 001845 352 AQIITSLKDPDISIRRRALDLLYGMCDVSNAKD---------------IVEELLQYLST-----ADFAMREELSLKAAIL 411 (1006)
Q Consensus 352 ~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~---------------Iv~eLl~yl~~-----~d~~~~~~lv~~I~~l 411 (1006)
.-++.++.|.++.+|.+.+.+|..+.+.-.... .+..++.|+.. ....+-..+...+..|
T Consensus 122 P~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L 201 (282)
T PF10521_consen 122 PPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSL 201 (282)
T ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHH
Confidence 345677889999999999999999987444333 33334445543 2234445555555555
Q ss_pred Hhh-c----CCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCCchh-hHHHHHHHhhhc
Q 001845 412 AEK-F----APDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIH-ETMVKVSAYLLG 485 (1006)
Q Consensus 412 aek-y----~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~-e~l~k~~~wilG 485 (1006)
+.. | .....|+.+++.+.+-.+-.+..+ ..+++++...++.+..+++.-... -.-++-.++++|
T Consensus 202 ~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~----------~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 202 LKTQENDDSNPRSTWLDKILREGILSSMEHESS----------FSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHhhccCCcccchHHHHHHHHHHHhhhceeccc----------cCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 432 2 233345555554422111111111 235666666666666666542111 122334566676
Q ss_pred cc
Q 001845 486 EY 487 (1006)
Q Consensus 486 Ey 487 (1006)
||
T Consensus 272 ~~ 273 (282)
T PF10521_consen 272 QI 273 (282)
T ss_pred HH
Confidence 65
No 226
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=44.25 E-value=6.1e+02 Score=30.04 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=47.9
Q ss_pred HHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcH-HHHHH--hHHHhhhcccCcChhHHHHHHHHhhhc
Q 001845 311 CIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVH-DIIKR--HQAQIITSLKDPDISIRRRALDLLYGM 376 (1006)
Q Consensus 311 ~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~-~~v~~--~~~~i~~~L~d~D~sIr~~aL~lL~~l 376 (1006)
.+..|..+|. |+|+.+--+|+.-+..++...|.. ..+.+ -...|+.++.++|..||..||.-+-+|
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3455666663 678888889999999999887642 23332 355688888999999999998876654
No 227
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=43.13 E-value=16 Score=38.31 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=56.1
Q ss_pred HHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHH
Q 001845 111 TVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWAD 186 (1006)
Q Consensus 111 sl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~ 186 (1006)
.+.+=+.|.|+..|-.|+-++......+-.+.+...+..++. |...||||...-++..+.+++|+.+. .|+.
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~--d~~~~vq~ai~w~L~~~~~~~~~~v~--~~l~ 195 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLK--DEEYYVQKAIGWALREIGKKDPDEVL--EFLQ 195 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTT--GS-HHHHHHHHHHHHHHCTT-HHHHH--HHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHhCHHHHH--HHHH
Confidence 344456788999999998888777766777788888888775 67999999999999999999998884 5544
No 228
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=42.30 E-value=7.6e+02 Score=33.71 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHH--H
Q 001845 382 AKDIVEELLQYLSTADFAMREELSLKAAILAEK-FAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQP--Y 458 (1006)
Q Consensus 382 v~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laek-y~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~--~ 458 (1006)
.+.|++..+.+. ...-|..++.+|...-.. -++....|.+.|-+|-.... ....++--.-.+|+...|.... -
T Consensus 945 ~~kVv~~i~SHs---~i~~KN~Lv~~ll~~l~~~s~~~~~~f~~iL~~l~~L~~-~~~~eVal~Ar~iLi~~ps~~~R~n 1020 (2196)
T KOG0368|consen 945 LKKVVDIILSHS---QIKSKNKLVLALLDQLKPPSSKVSDEFRDILRKLTELNH-TNTSEVALKARQILIQSPSYELRHN 1020 (2196)
T ss_pred HHHHHHHHHcch---hhhhhhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhCcchhhhHH
Confidence 344444444332 223455555555432222 22345566777766655543 2455666666777777665322 2
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001845 459 AAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAK 527 (1006)
Q Consensus 459 a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~K 527 (1006)
-++.++..=-....++ . -.|+++-..+++.. ..-+++.|..-|...++.+....|..++.
T Consensus 1021 ~~e~i~~s~i~~~g~~--~--~~~~~~~l~~lidS-----~~~v~dvL~~fF~H~d~~v~~~alevYv~ 1080 (2196)
T KOG0368|consen 1021 QIESILKSSIVMTGYQ--F--KKPCLEILKELIDS-----NLSVFDVLPGFFYHSDPTVSSAALEVYVR 1080 (2196)
T ss_pred HHHHHHHhhhhcccCc--c--cccchhHHHhhccc-----hhhHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 2333332211112221 1 12788888888754 34678888888888888999888888877
No 229
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=41.82 E-value=87 Score=28.68 Aligned_cols=57 Identities=28% Similarity=0.501 Sum_probs=43.4
Q ss_pred HhhhcChHhHHHHHHHHHHHHhhcCC----ChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 001845 392 YLSTADFAMREELSLKAAILAEKFAP----DLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVT 450 (1006)
Q Consensus 392 yl~~~d~~~~~~lv~~I~~laeky~~----~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~ 450 (1006)
|+...+ +=+.+++.++-.++++... ...||+.+|-+++..+.+|+..| ..|+-.++.
T Consensus 13 f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 13 FVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 444444 7777888888888776653 37899999999999988889888 578888776
No 230
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=41.68 E-value=1e+02 Score=37.28 Aligned_cols=156 Identities=20% Similarity=0.219 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHh-CCCCCchHHHHHHhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCC--ChhHHh
Q 001845 49 YEKKKYVWKMLYIYML-GYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGR--NETFQC 125 (1006)
Q Consensus 49 ~~kkk~v~KLiyi~~l-G~dv~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~--n~~~~~ 125 (1006)
++-...|.+|..+|+- |-+.+.+ ..-.+..+.+|-+.||.=+..+....+- ++..+.-.|.+. +.-.+.
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~-----~~pa~~~lq~kIL~~L~kS~~Aa~~~~~---~~~i~~~~l~~~~~~~klk~ 339 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENG-----RPPASPRLQEKILSLLSKSVIAATSFPN---ILQIVFDGLYSDNTNSKLKS 339 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcC-----CCCCCHHHHHHHHHHHHHhHHHHhCCcc---HHHHHhccccCCccccccch
Confidence 4456677777777762 3221111 1234556778999999888776654332 223344567777 677888
Q ss_pred HHHHhh---hcC---CCHHhHHHHHHHH----HHHHh------cCCCChhHHHHHHHHHHHHHhhCCCccc-cCcHHHHH
Q 001845 126 LALTMV---GNI---GGREFAESLAPDV----QKLII------SSSCRPLVRKKAALCLLRLYRKNPDVVN-VDGWADRM 188 (1006)
Q Consensus 126 lAL~~l---~~i---~~~e~~~~l~~~V----~~~l~------s~~~~~~VRKkA~lal~~l~~~~p~~v~-~~~~~~~l 188 (1006)
++++++ ..+ ..+.++..+.+.| .+.+. +...+.-.|..|.-|+..+.++.|..+. +-.++..+
T Consensus 340 ~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~L 419 (501)
T PF13001_consen 340 LALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFL 419 (501)
T ss_pred hcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHH
Confidence 999999 433 2344444444444 44441 1134678999999999999999999984 23456777
Q ss_pred HhhhcCCChhHHHHHHHHHHHHHh
Q 001845 189 AQLLDERDLGVLTSSMSLLVALVS 212 (1006)
Q Consensus 189 ~~lL~d~d~~V~~~a~~ll~~I~~ 212 (1006)
-+.|++.++.|..+.--+|..+..
T Consensus 420 F~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 420 FDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHhhCcchHHHHHHHHHHHHHHH
Confidence 777778888888777666666554
No 231
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=40.42 E-value=8.4e+02 Score=32.37 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=25.2
Q ss_pred hHhHHHHHHHHHHHHhhcCCC------------hhhHHHHHHHHHH
Q 001845 398 FAMREELSLKAAILAEKFAPD------------LSWYVDVILQLID 431 (1006)
Q Consensus 398 ~~~~~~lv~~I~~laeky~~~------------~~w~vd~ll~ll~ 431 (1006)
...|.+++.++..|++-|... ..|+.+.--++=+
T Consensus 415 ~~~k~~~~~~m~eLa~~Fsg~~~L~~~~~n~~L~~Wf~~~~~~i~~ 460 (1081)
T PF10266_consen 415 EECKKEASERMQELAEFFSGTKPLTRIEKNENLQQWFREMSKQIES 460 (1081)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccccchhHHHHHHHHHHHHHh
Confidence 467999999999999988621 2588777766533
No 232
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=40.22 E-value=9.4e+02 Score=31.08 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=71.9
Q ss_pred CCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcc--------cCcChhHHHHHH--HHhhhcc-CcccHHHHHHHH
Q 001845 321 VREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSL--------KDPDISIRRRAL--DLLYGMC-DVSNAKDIVEEL 389 (1006)
Q Consensus 321 s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L--------~d~D~sIr~~aL--~lL~~l~-n~~Nv~~Iv~eL 389 (1006)
.+||---.++......|+.......-+.+..=+++.|. +|+...|||.=| -+...++ ++.=.+..+.-|
T Consensus 181 EKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~L 260 (1030)
T KOG1967|consen 181 EKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTITIRREDLKASLRSALVSTPSFAPFALPLL 260 (1030)
T ss_pred CCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCcccccHHHHHHHHHHHHhcCccchhhHHHHH
Confidence 56776667777777777774322222333333444554 356666886644 3444443 666677788888
Q ss_pred HHHhhhcChHhHHHHHHHHHHHHhhcC-CChhhHHHHHHHHHH
Q 001845 390 LQYLSTADFAMREELSLKAAILAEKFA-PDLSWYVDVILQLID 431 (1006)
Q Consensus 390 l~yl~~~d~~~~~~lv~~I~~laeky~-~~~~w~vd~ll~ll~ 431 (1006)
++=+...++..|.+....+-.+|.+|. ....|.-.-+...++
T Consensus 261 lEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik 303 (1030)
T KOG1967|consen 261 LEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIK 303 (1030)
T ss_pred HHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHH
Confidence 888888899999899888899999997 445566555555444
No 233
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=39.90 E-value=35 Score=39.90 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=84.7
Q ss_pred CCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCC--CHHh--------------------
Q 001845 82 PKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIG--GREF-------------------- 139 (1006)
Q Consensus 82 ~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~--~~e~-------------------- 139 (1006)
.+--+||.-|=|++.++...++... -.-+.--|.|+|+--|++||..++.|- +..+
T Consensus 24 ~~~~~~~~~ygyw~~~~pd~~~~g~--p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a 101 (728)
T KOG4535|consen 24 IKSIEKKVLYGYWSAFIPDTPELGS--PSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIA 101 (728)
T ss_pred HhhhhhhhhhceeeeecCCCCCCCC--ceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHH
Confidence 3455799999999999988665311 001123478999999999999988642 1111
Q ss_pred --HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC-Ccccc---CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhc
Q 001845 140 --AESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP-DVVNV---DGWADRMAQLLDERDLGVLTSSMSLLVALVSN 213 (1006)
Q Consensus 140 --~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p-~~v~~---~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~ 213 (1006)
+..+...+.-+|.. ..+|-+---.+-|+..+....| +.++. .++...++.++..+|+.|..+++.++..|...
T Consensus 102 ~si~~~~r~l~~~l~~-e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 102 CSIRELHRCLLLALVA-ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 12333333334442 2344444555667777777776 22211 25678899999999999999999999998865
Q ss_pred C
Q 001845 214 N 214 (1006)
Q Consensus 214 ~ 214 (1006)
+
T Consensus 181 ~ 181 (728)
T KOG4535|consen 181 H 181 (728)
T ss_pred C
Confidence 5
No 234
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=39.49 E-value=1.8e+02 Score=26.52 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHhhcC----CChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Q 001845 399 AMREELSLKAAILAEKFA----PDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTN 451 (1006)
Q Consensus 399 ~~~~~lv~~I~~laeky~----~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~ 451 (1006)
+-+.+++.++-..+.+.. ....+|+.+|-+++..+.+|+..| ..|+-.++.+
T Consensus 17 ~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 17 EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 557778888877776553 446799999999988877888888 5888888876
No 235
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=39.46 E-value=8.6e+02 Score=30.44 Aligned_cols=141 Identities=18% Similarity=0.252 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC
Q 001845 262 RSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT 341 (1006)
Q Consensus 262 ~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~ 341 (1006)
.++...|..+++.++.. . -...++|=..++..--+..+..+.+...|-+=+...+..++=.+|..+..++..-
T Consensus 348 ~~~~p~l~pi~~~~~~~-~------~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i 420 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPK-Q------ALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESI 420 (700)
T ss_pred hhhhHHHHHHhccCCcc-c------chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc
Confidence 34445555555433321 1 2367888888888877778888899998888788899999999999998888765
Q ss_pred CcHHHHH----HhHHHhhhcccCcChhHHHHHHHHhhhcc---CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHH
Q 001845 342 DVHDIIK----RHQAQIITSLKDPDISIRRRALDLLYGMC---DVSNAKDIVEELLQYLSTADFAMREELSLKAAILA 412 (1006)
Q Consensus 342 ~~~~~v~----~~~~~i~~~L~d~D~sIr~~aL~lL~~l~---n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~la 412 (1006)
|. ..++ +-...+ |++..+.++|.-.|.-+-.+. |.-++-.++.-+++.....|+++.-..+.-...++
T Consensus 421 D~-~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 421 DV-PFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred cH-HHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 53 2333 223332 677888888887766555554 44444444444444444567777666555555544
No 236
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=39.31 E-value=98 Score=32.01 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=62.4
Q ss_pred CchHHHHHHhccCCCcCchhhhHHHHHhhccc-Chh----HHHHHHHHHHhhcCCCChhHHhHHHHhhhcC--CCHHhHH
Q 001845 69 DFGHMEAVSLISAPKYPEKQVGYIVTSCLLNE-NHD----FLRLAINTVRNDIIGRNETFQCLALTMVGNI--GGREFAE 141 (1006)
Q Consensus 69 ~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~-~~e----~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i--~~~e~~~ 141 (1006)
+..++-...=+.-.+...+.++..++..++.. .++ ++--+|--|++-|++.|+.+.+.+|++|-.+ .++.+-+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34455555666777888888999998888887 554 3344566788999999999999999999887 2345567
Q ss_pred HHHHHHHHHH
Q 001845 142 SLAPDVQKLI 151 (1006)
Q Consensus 142 ~l~~~V~~~l 151 (1006)
+|.|+..++|
T Consensus 117 aLvPyyrqLL 126 (183)
T PF10274_consen 117 ALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHH
Confidence 8888877777
No 237
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.89 E-value=61 Score=31.21 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCccc
Q 001845 332 ENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSN 381 (1006)
Q Consensus 332 ~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~N 381 (1006)
+-|.++...++ ..+..-...+...|++.++.||.|+|.+|-.+|...+
T Consensus 23 ~Eia~~t~~s~--~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 23 EEIAKLTRKSV--GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHcCH--HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 34455555432 3454555566777888888888888888888777654
No 238
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=38.23 E-value=69 Score=30.68 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc---ccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC
Q 001845 142 SLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV---NVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNN 214 (1006)
Q Consensus 142 ~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v---~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~ 214 (1006)
.+...+.++|.. ..++-+---|+.=+..+.|.+|+.. ..-+.-++|.+||.+.|+.|...|+..+..+..++
T Consensus 43 ~llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 43 ELLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 344555566642 2366676777777788888888643 22356688889999999999999998888776554
No 239
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=37.73 E-value=6.4e+02 Score=28.40 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChhHHH---HHHHHHHHhccCCChHHHHHHHHHHHHhc
Q 001845 515 MSTVAILLSTYAKILMHTQPADPELQN---QIWAIFNKYESCIEVEIQQRAVEYFALSR 570 (1006)
Q Consensus 515 ~~tr~~iLta~~Kl~~~~~~~~~e~~~---~v~~vl~~~~~s~d~EvqqRA~eyl~Ll~ 570 (1006)
+.+.+..|.+.+=|...+.. ..+.. .....|...+.+.|.+||-=|.|-++|+-
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~--~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPD--SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45666667666665554211 12333 34445556678999999999999999884
No 240
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=37.35 E-value=2.1e+02 Score=28.21 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHH
Q 001845 163 KAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQ 242 (1006)
Q Consensus 163 kA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlq 242 (1006)
.+++-+.=+.+..|+... +-+..|.+-|..+|+.|++-|+.|+..+.++-...|+..+.. ..|+.
T Consensus 20 ~~ileicD~In~~~~~~k--~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-------------~~Fl~ 84 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQ--LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGK-------------FRFLN 84 (139)
T ss_pred HHHHHHHHHHHcCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh-------------HHHHH
Confidence 445555556666665443 567778888899999999999999999998877777655422 33444
Q ss_pred HHHHHHHh-cC-CCCCChhhHHHHHHHHHHHH
Q 001845 243 VKTMRALQ-YF-PTVEDPNTRRSLFEVLQRIL 272 (1006)
Q Consensus 243 vklLrlL~-~~-~~~~d~~~~~~l~~~l~~il 272 (1006)
.+++++. .| ....++.+.+++.+++...-
T Consensus 85 -el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 85 -ELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred -HHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3666664 22 12235667776666666554
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.28 E-value=8.9e+02 Score=29.67 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=64.2
Q ss_pred CchHHHHHHhccCCCcCchhhhHHHHHhhccc----ChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHH--H
Q 001845 69 DFGHMEAVSLISAPKYPEKQVGYIVTSCLLNE----NHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAE--S 142 (1006)
Q Consensus 69 ~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~----~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~--~ 142 (1006)
...+-|++.-..|++-..|+-+.-.+.++.+. +.++.-...-.+.+-+-|..+.+|--|+.++|.....+.-+ .
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 45677888888888755554444444444443 23455555566666777899999999999999987533321 2
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHH
Q 001845 143 LAPDVQKLIISSSCRPLVRKKAALCL 168 (1006)
Q Consensus 143 l~~~V~~~l~s~~~~~~VRKkA~lal 168 (1006)
+...++.++ .+|.+.-||+.|.+-+
T Consensus 170 ~~n~l~~~v-qnDPS~EVRr~allni 194 (885)
T COG5218 170 IVNLLKDIV-QNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHH-hcCcHHHHHHHHHHHe
Confidence 233333333 3588999999987753
No 242
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.22 E-value=1.1e+02 Score=30.80 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=44.5
Q ss_pred HHHHHhhhcc--CcccHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHH----H
Q 001845 368 RALDLLYGMC--DVSNAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDD----I 441 (1006)
Q Consensus 368 ~aL~lL~~l~--n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~e----i 441 (1006)
.+.++|..+. .+.-..+|++++++.+-.....-..-.+.-++.++.+++-...-+.+.+-.++..- .+.+.+ .
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l-~~lp~~~a~~l 115 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYL-SFLPGDVAIGL 115 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGT-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 3444444432 44455566666666555422221122344445555555422221222222222111 123333 3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhcCCch
Q 001845 442 WFRVVQFVTNNEDLQPYAAAKAREYLDKPAI 472 (1006)
Q Consensus 442 ~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~ 472 (1006)
+..+.-++...++++++.+-.|-+.+-..+.
T Consensus 116 l~Al~PLi~~s~~lrd~lilvLRKamf~r~~ 146 (158)
T PF14676_consen 116 LRALLPLIKFSPSLRDSLILVLRKAMFSREL 146 (158)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTT-SSH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHccccH
Confidence 3444446667778888887777777754433
No 243
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=36.18 E-value=97 Score=38.18 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHH-HhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHH
Q 001845 307 MMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIK-RHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDI 385 (1006)
Q Consensus 307 l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~-~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~I 385 (1006)
..+..+..|.++..+.|.-+|.+-|+.+-+.+.+-.. +.+. +-...+..-+.|.|..||-.+|.-+..++..=|-+.+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~-~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK-QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH-HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 5667788888888999999999999999888875431 1221 1223345567788889998888887777766666666
Q ss_pred HHHHHHHhhh
Q 001845 386 VEELLQYLST 395 (1006)
Q Consensus 386 v~eLl~yl~~ 395 (1006)
=.||++|+..
T Consensus 406 n~Ellr~~ar 415 (690)
T KOG1243|consen 406 NGELLRYLAR 415 (690)
T ss_pred cHHHHHHHHh
Confidence 6777777764
No 244
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=36.07 E-value=29 Score=37.07 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=26.7
Q ss_pred EEEeeCcccCceEEEEEEeCCCchHHHHHHHHHHHh
Q 001845 931 TRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQL 966 (1006)
Q Consensus 931 vrie~~~~~~~~~ritvRs~~~~ls~~i~~~i~~~l 966 (1006)
++++...+.+ .++|++++++|..|..|.+.+.+.+
T Consensus 110 i~v~~~~~t~-ii~Isv~~~dp~~A~~ian~~~~~~ 144 (226)
T TIGR01006 110 VTVTNPTDTR-LISISVKDKTPQDASKIANSLREVA 144 (226)
T ss_pred eEEeCCCCcE-EEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 4555555567 9999999999998877777776644
No 245
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.97 E-value=56 Score=39.03 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=68.7
Q ss_pred hccCCCc-CchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHH-----hHHHHhhhcCCCHHhHHHHHHHHHHHH
Q 001845 78 LISAPKY-PEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQ-----CLALTMVGNIGGREFAESLAPDVQKLI 151 (1006)
Q Consensus 78 L~~S~~~-~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~-----~lAL~~l~~i~~~e~~~~l~~~V~~~l 151 (1006)
-..-+.+ ..||-.=+.+.++.-..+|++-=.||-+..|.. +..| ++||-..|. +...++..+.+ ..
T Consensus 489 ya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~d---s~lRy~G~fs~alAy~GT-gn~~vv~~lLh----~a 560 (926)
T COG5116 489 YAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKD---SILRYNGVFSLALAYVGT-GNLGVVSTLLH----YA 560 (926)
T ss_pred HhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCch---HHhhhccHHHHHHHHhcC-CcchhHhhhhe----ee
Confidence 3333444 356655566666666667777777777766554 4433 344433332 22333333333 33
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcC-CChhHHHHHHHHHHHH
Q 001845 152 ISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE-RDLGVLTSSMSLLVAL 210 (1006)
Q Consensus 152 ~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d-~d~~V~~~a~~ll~~I 210 (1006)
+| |.+.-|||.|++|+--++-.+|+.+. ...++|.| .|+.|- ++++....|
T Consensus 561 vs-D~nDDVrRAAViAlGfvc~~D~~~lv------~tvelLs~shN~hVR-~g~AvaLGi 612 (926)
T COG5116 561 VS-DGNDDVRRAAVIALGFVCCDDRDLLV------GTVELLSESHNFHVR-AGVAVALGI 612 (926)
T ss_pred cc-cCchHHHHHHHHheeeeEecCcchhh------HHHHHhhhccchhhh-hhhHHHhhh
Confidence 33 88999999999999988888887663 55677875 455554 444444444
No 246
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.92 E-value=6.1e+02 Score=27.67 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=44.2
Q ss_pred HhhhccCcccHHHHHHHHHHHhhh--cChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHH
Q 001845 372 LLYGMCDVSNAKDIVEELLQYLST--ADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQ 447 (1006)
Q Consensus 372 lL~~l~n~~Nv~~Iv~eLl~yl~~--~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ 447 (1006)
+|+++|+-+ ++.|.+|+.+ .+...|..++.++..++..-+.+.+-.+..+..++......-.+.+|..++.
T Consensus 104 ilasv~~G~-----~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~ 176 (249)
T PF06685_consen 104 ILASVGDGD-----IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVA 176 (249)
T ss_pred HHHHHhCCC-----HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 455554433 3455567765 3566788888888888877776666666666666655433333446666554
No 247
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=35.70 E-value=3e+02 Score=27.84 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHHccCC------cHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccH-HHH------HHHHHH
Q 001845 325 NIRYLGLENMTRMLMVTD------VHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNA-KDI------VEELLQ 391 (1006)
Q Consensus 325 nirylaL~~L~~l~~~~~------~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv-~~I------v~eLl~ 391 (1006)
++--.+|.++..|..+.- ...+|++-...+- -...|.+|-+++|.+|-.++..+.- -.. ++.|+.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn--~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVN--SSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHc--cccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH
Confidence 444457777777777531 1123433222221 2233789999999999999865544 333 456888
Q ss_pred HhhhcChHhHHHHHHHHHHHHhhcCCChhh
Q 001845 392 YLSTADFAMREELSLKAAILAEKFAPDLSW 421 (1006)
Q Consensus 392 yl~~~d~~~~~~lv~~I~~laeky~~~~~w 421 (1006)
+++..|.+++...+.-|-.|-.|- ++.+|
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA-~~~~r 138 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKA-DDSKR 138 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcC-ChHHH
Confidence 999999999988777776666553 44444
No 248
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.07 E-value=50 Score=31.80 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=33.4
Q ss_pred CHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCcc
Q 001845 136 GREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVV 179 (1006)
Q Consensus 136 ~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v 179 (1006)
+++-+..+...+.+-|. +++|+||.||+-.+-++++.-++.+
T Consensus 32 s~~~~~ei~d~L~kRL~--~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 32 SVGSCQELLEYLLKRLK--RSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred CHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHHhhCCHHH
Confidence 34556778888888886 6789999999999999998876544
No 249
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.87 E-value=2.4e+02 Score=29.18 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=51.6
Q ss_pred ecceeEEEEEEeecCCCCcceeEEEEeC-C-CceeEEeecCC---cccCCCCeeEEEEEEEecCCCC-CCcEEEEEEeeC
Q 001845 761 RGHHGRLVLFLGNKNTSPLFSVQALILP-P-SHLKMELSLVP---ETIPPRAQVQCPLEVMNLRPSR-DVAVLDFSYKFN 834 (1006)
Q Consensus 761 ~~~~~~i~l~~~Nks~~~lt~f~~~~~~-p-~~l~~~~~~~~---~tI~p~~q~q~~v~v~~~~~~~-~~P~l~i~y~~~ 834 (1006)
.|....+.+.+-|..+.+-.++++.-+. | +.+.+.....+ .+|+||+.+++.+.++.+.... ...-..++|+..
T Consensus 36 ~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~ 115 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDS 115 (181)
T ss_pred CCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECC
Confidence 5666888888999999998888886633 3 46776544333 7999999998888887654332 222335788653
No 250
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.86 E-value=1e+03 Score=29.89 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=109.0
Q ss_pred CChhHHHHHHHHHhcCCCC--CChhhHHHHHHHHHHHH-ccCCcccccccCCChhHHHHHHHHHHHhc----CCc-----
Q 001845 237 PSPWLQVKTMRALQYFPTV--EDPNTRRSLFEVLQRIL-MGTDVVKNVNKNNASHAVLFEALALVMHL----DAE----- 304 (1006)
Q Consensus 237 ~~pwlqvklLrlL~~~~~~--~d~~~~~~l~~~l~~il-~~~~~~~~~~~~n~~~aVl~eai~~i~~l----~~~----- 304 (1006)
.+|+ ..++=++|..|... -++.+.+.++...+-+| .+. +-.|+ -|-..|..+++.+ +++
T Consensus 143 rsp~-~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L------~a~Ns--~VrsnAa~lf~~~fP~~dpd~~~e~ 213 (1005)
T KOG1949|consen 143 RSPV-HSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGL------KARNS--EVRSNAALLFVEAFPIRDPDLHAEE 213 (1005)
T ss_pred CChH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhh------ccCch--hhhhhHHHHHHHhccCCCCCccHHH
Confidence 3454 35677777776542 23445555666665555 222 22333 4555566666654 222
Q ss_pred -HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC----CcHHHHHHhHHHhhhccc-CcChhHHHHHHHHhhhccC
Q 001845 305 -KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT----DVHDIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCD 378 (1006)
Q Consensus 305 -~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~----~~~~~v~~~~~~i~~~L~-d~D~sIr~~aL~lL~~l~n 378 (1006)
..+++.=...|-++|++.-|-+|-.|...+.++.... | +..+.+-..+|+.-+. |.-.++|.-..+=|--|.+
T Consensus 214 mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP-~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~ 292 (1005)
T KOG1949|consen 214 MDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP-PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD 292 (1005)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc
Confidence 1345555667888999999999999999999988632 2 2456677777776664 6666788777776666665
Q ss_pred cccHHHHHHHHHHHh----hhcChHhHHHHHHHHHHH-HhhcCCChh-hHHHHHHHHHHhcC
Q 001845 379 VSNAKDIVEELLQYL----STADFAMREELSLKAAIL-AEKFAPDLS-WYVDVILQLIDKAG 434 (1006)
Q Consensus 379 ~~Nv~~Iv~eLl~yl----~~~d~~~~~~lv~~I~~l-aeky~~~~~-w~vd~ll~ll~~~g 434 (1006)
.--...+++.++.-+ .+....+|-..+.-|..+ +-|+..-.. .-.|.++--|....
T Consensus 293 np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~ 354 (1005)
T KOG1949|consen 293 NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS 354 (1005)
T ss_pred CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc
Confidence 555556666666533 234455666666555544 223332211 12345554454443
No 251
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.59 E-value=1e+02 Score=29.02 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc--HHHHHHhHHHhhhcc--------
Q 001845 289 AVLFEALALVMHLDAEKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDV--HDIIKRHQAQIITSL-------- 358 (1006)
Q Consensus 289 aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~--~~~v~~~~~~i~~~L-------- 358 (1006)
..+.|.+.++-.- .+....++..|.+=|.+++++..|.+|..|-.++...+. ...+..+. .+..++
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~ 94 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLL 94 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccc
Confidence 4445544444221 123455777787778888999999999999999987542 12233221 112221
Q ss_pred -cCcChhHHHHHHHHhhhcc
Q 001845 359 -KDPDISIRRRALDLLYGMC 377 (1006)
Q Consensus 359 -~d~D~sIr~~aL~lL~~l~ 377 (1006)
++.+..||.++++++....
T Consensus 95 ~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 95 GDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cCCCChHHHHHHHHHHHHHh
Confidence 2557889999999886543
No 252
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=34.30 E-value=5.5e+02 Score=30.57 Aligned_cols=155 Identities=14% Similarity=0.238 Sum_probs=94.0
Q ss_pred CChhHHHHHHHHHHHHHhhCCCccccCcH-----------HHHHHh-hhcCCChhHHHHHHHHHHHHHhcChhhhhccCC
Q 001845 156 CRPLVRKKAALCLLRLYRKNPDVVNVDGW-----------ADRMAQ-LLDERDLGVLTSSMSLLVALVSNNHEAYWSCLP 223 (1006)
Q Consensus 156 ~~~~VRKkA~lal~~l~~~~p~~v~~~~~-----------~~~l~~-lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~ 223 (1006)
...-||..|+.|+..+.+.-|..+--.-| .+.+.. -|+|.++.+-..|+.++..|..... .|....-
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk-~fls~a~ 86 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK-QFLSVAE 86 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH-HHHHHHh
Confidence 45679999999998877655432110111 122222 3479999999889888888775432 3322211
Q ss_pred CCCCCccccccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCC
Q 001845 224 KCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA 303 (1006)
Q Consensus 224 ~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~ 303 (1006)
.+ .++ ...||.....-.++. ++.|+-.++... .+.-++-++++++-.+-.
T Consensus 87 ~~---~~~----~ftpf~v~~a~si~~-------------~~r~l~~~l~~e----------~~~~~~tq~~kcla~lv~ 136 (728)
T KOG4535|consen 87 DT---SDH----AFTPFSVMIACSIRE-------------LHRCLLLALVAE----------SSSQTVTQIIKCLANLVS 136 (728)
T ss_pred cc---CCc----CCCchHHHHHHHHHH-------------HHHHHHHHHHHh----------cCchhHHHHHHHHHHHHh
Confidence 11 111 246776544433332 334444444221 123577777777766532
Q ss_pred -------cHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC
Q 001845 304 -------EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT 341 (1006)
Q Consensus 304 -------~~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~ 341 (1006)
+-.++...++.+.+++.++|+|+|.-+|-.|..|+..+
T Consensus 137 ~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 137 NAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 23466778888999999999999999999999988754
No 253
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.54 E-value=2.4e+02 Score=27.89 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHH
Q 001845 163 KAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQ 242 (1006)
Q Consensus 163 kA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlq 242 (1006)
..++-+.-+.+..++.- .+.+..|.+-|..+|+.|+.-|+.|+..+.++-...|+..+. ...|++
T Consensus 23 ~~ileicD~In~~~~~~--k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva-------------s~~fl~ 87 (142)
T cd03569 23 ASILEICDMIRSKDVQP--KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA-------------SREFMD 87 (142)
T ss_pred HHHHHHHHHHhCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh-------------hHHHHH
Confidence 44455555555555433 366778888888899999999999999998877666655442 134444
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q 001845 243 VKTMRALQYFPTVEDPNTRRSLFEVLQRIL 272 (1006)
Q Consensus 243 vklLrlL~~~~~~~d~~~~~~l~~~l~~il 272 (1006)
.+.+++.. ..++.+.+++..++...-
T Consensus 88 -~l~~l~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 88 -ELKDLIKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred -HHHHHHcc---cCCHHHHHHHHHHHHHHH
Confidence 35555554 235667776666666554
No 254
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=32.84 E-value=7.6e+02 Score=27.81 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCch-------HHHHHHhccCCCcCchhhhHHHHHhhc------ccChhHHHHHHHHHHh
Q 001845 48 PYEKKKYVWKMLYIYMLGYDVDFG-------HMEAVSLISAPKYPEKQVGYIVTSCLL------NENHDFLRLAINTVRN 114 (1006)
Q Consensus 48 ~~~kkk~v~KLiyi~~lG~dv~f~-------~~~vi~L~~S~~~~~KrlgYL~l~~l~------~~~~e~~~LviNsl~K 114 (1006)
...|..++..++-+...-|-.+|. .-.+.+.+...+-.+..+++-++.++. .+..++.--+.+.|++
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 455777777777777666654444 333444554444466666654444442 2345665666666666
Q ss_pred hcCCCC--hhHH-----hHHHHhhhcCCCHHhHH---HHHHHHHHHHh-cCCC---------ChhHHHHHHHHHHHHHhh
Q 001845 115 DIIGRN--ETFQ-----CLALTMVGNIGGREFAE---SLAPDVQKLII-SSSC---------RPLVRKKAALCLLRLYRK 174 (1006)
Q Consensus 115 DL~s~n--~~~~-----~lAL~~l~~i~~~e~~~---~l~~~V~~~l~-s~~~---------~~~VRKkA~lal~~l~~~ 174 (1006)
=+.+.. +..| |||+.+.-.-.+.+-.. .....|..... ..+. ++-|.-.|+.|..-|+..
T Consensus 137 ~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~ 216 (309)
T PF05004_consen 137 ILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTT 216 (309)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhc
Confidence 666543 3343 33333332223333344 33343333221 1111 356888888888888877
Q ss_pred CCCc-cc--cCcHHHHHHhhhcCCChhHHHHH---HHHHHHHHh
Q 001845 175 NPDV-VN--VDGWADRMAQLLDERDLGVLTSS---MSLLVALVS 212 (1006)
Q Consensus 175 ~p~~-v~--~~~~~~~l~~lL~d~d~~V~~~a---~~ll~~I~~ 212 (1006)
.|.. +. .+...+++..+|+..|..|..+| +++++|+..
T Consensus 217 ~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 217 LPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 7751 21 13467889999998899997665 666777665
No 255
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=32.78 E-value=2.1e+02 Score=26.87 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=39.0
Q ss_pred CCcCchhhhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhc
Q 001845 82 PKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGN 133 (1006)
Q Consensus 82 ~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~ 133 (1006)
.......-..+.++.+.+++++-..-++..|+|=|.++|+.++-.||..|=.
T Consensus 12 ~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~ 63 (115)
T cd00197 12 ENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEY 63 (115)
T ss_pred CCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 3444555555666666666666677899999999999999999999987654
No 256
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=32.34 E-value=82 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=26.7
Q ss_pred CcHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 001845 182 DGWADRMAQLLDERDLGVLTSSMSLLVALV 211 (1006)
Q Consensus 182 ~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~ 211 (1006)
.+.++.+.++|.+.|+.|...|+..+..|+
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999998876
No 257
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.30 E-value=6.2e+02 Score=31.89 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001845 384 DIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKA 463 (1006)
Q Consensus 384 ~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l 463 (1006)
..|.+|+.++...|....+++-.++-.+... ..-.|.|..|++..-..|+ ..+.+.++.+ ..|. .+....++
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~y~~~t~s---~~~~~il~~~--~~P~-~K~~~~~l 75 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNS--DREPWLVNGLVDYYLSTNS---QRALEILVGV--QEPH-DKHLFDKL 75 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHHHHHHHHHHhhcCc---HHHHHHHHhc--CCcc-HHHHHHHH
Confidence 4577888999999988888887766654432 3345999999988766664 2233333321 2332 23456777
Q ss_pred HHhhcCCchhhHHHHHHHhhhccccccccCCCCCChHHHHHHHHhh-CCCCChhHHHHHHHHHHHHHhh
Q 001845 464 REYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEK-LPTVSMSTVAILLSTYAKILMH 531 (1006)
Q Consensus 464 ~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~-~~~~s~~tr~~iLta~~Kl~~~ 531 (1006)
-+++.++...-..+...++++..-...+. .+.-..+|.-|.+. ..+.+..+-...|++++-|.=+
T Consensus 76 ~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~---~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 76 NDYFVKPSYRLQALTLLGHFVRSQPPWLY---KILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHcCchhHHHHHHHHHHHHhcCCchHH---HHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 77887765543333333333333221111 01112344433333 2456666666777777775443
No 258
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.06 E-value=1.2e+02 Score=36.34 Aligned_cols=131 Identities=17% Similarity=0.113 Sum_probs=74.2
Q ss_pred HhccCCCcCchhhhHHHHHhhcccChhHHHHHHHHHHh-hcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCC
Q 001845 77 SLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRN-DIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSS 155 (1006)
Q Consensus 77 ~L~~S~~~~~KrlgYL~l~~l~~~~~e~~~LviNsl~K-DL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~ 155 (1006)
+|+.+.+...|--|-+.+.+-+-..... =++.++.. -.+|.|+.+|-.|..+||-++-.+ +.+.+...++|.. .
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTgn~--~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tvelLs~-s 597 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTGNL--GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVELLSE-S 597 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCCcc--hhHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHHHhhh-c
Confidence 4666666666666655544433322211 11222222 246677778888888887766543 2333444455543 3
Q ss_pred CChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHH-HhcChh
Q 001845 156 CRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVAL-VSNNHE 216 (1006)
Q Consensus 156 ~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I-~~~~~~ 216 (1006)
.|++||--.++++--.+--..+.+ ..+.+..|+.|.+-.|-.+|+..+--| .+++++
T Consensus 598 hN~hVR~g~AvaLGiacag~G~~~----a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGDKV----ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCccHH----HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 578888888877765554444333 356677777887777766665555444 355543
No 259
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=31.83 E-value=2.8e+02 Score=31.01 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=67.9
Q ss_pred ChHHHHH-----HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCC-CCCchHHHHHHhccCCCcCchhhhHHHH
Q 001845 21 NKEQERL-----RVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGY-DVDFGHMEAVSLISAPKYPEKQVGYIVT 94 (1006)
Q Consensus 21 ~~~~e~~-----~I~~El~~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~-dv~f~~~~vi~L~~S~~~~~KrlgYL~l 94 (1006)
=+++|++ +|++++++--.-+... ++|..-+.++..|.+ .|.|- ++.+- -.....+.++|+|-.+
T Consensus 197 Wk~qEk~~yisskI~sgI~~~~~~l~~~-nis~s~~~~~f~~t~--~~~glk~~~~~-------~~~t~~~I~~mV~~~L 266 (337)
T PF06767_consen 197 WKEQEKKTYISSKINSGIEKAGRTLHHA-NISESTQQRAFLETM--SMCGLKNVETP-------PPHTQSSIEKMVEEVL 266 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHH--HHCT-----SS---------SS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccC-CccHHHHHHHHHHHH--HHcCCcccccC-------CCcccChHHHHHHHHH
Confidence 3677765 6889988877777777 888888888888854 45552 22211 1122446677777543
Q ss_pred HhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCCHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 001845 95 SCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRK 174 (1006)
Q Consensus 95 ~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~ 174 (1006)
+....=...|+.|+ ....+...|+++++...|.+.|-+-| -.-+.|-|=--+.+++-.
T Consensus 267 ---~~n~~f~~fl~~~~------------------~~~~~~l~elie~vs~qvf~~lF~~d-~~~i~~mae~~~~~l~~~ 324 (337)
T PF06767_consen 267 ---LKNKIFQNFLVENA------------------NHSQSMLAELIEAVSDQVFNALFRED-PQAIQKMAEEQLTTLHVR 324 (337)
T ss_dssp ---HTSTTTHHHHTSS-------------------SSCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHhCc------------------chhHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHhhheeee
Confidence 33322223344433 12223346889999999999998532 334667777777777644
No 260
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=31.81 E-value=9.4e+02 Score=29.56 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=86.8
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHHccCCcHHH----HHHhHHHhhhcc-cCcChhHHHHHHHHhhhccC----cccHH
Q 001845 313 ALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDI----IKRHQAQIITSL-KDPDISIRRRALDLLYGMCD----VSNAK 383 (1006)
Q Consensus 313 ~~L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~----v~~~~~~i~~~L-~d~D~sIr~~aL~lL~~l~n----~~Nv~ 383 (1006)
...|-.|+..+..+|-+.+..+..|..+.|..++ +.++...|+..+ .|.|. +|--++.++..|-. ++..-
T Consensus 317 ry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~~SeI 395 (740)
T COG5537 317 RYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVLSSSEI 395 (740)
T ss_pred cccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcccchhHH
Confidence 3344466777788999999999999988776543 446666776554 58877 88888887765531 12222
Q ss_pred HHHHHHHHHhhhc---ChHhHHHHHHHHHHH-H----hhcCCChhhH-HHHHHHHHHhcC---CcchHHHHHHHHHHHhc
Q 001845 384 DIVEELLQYLSTA---DFAMREELSLKAAIL-A----EKFAPDLSWY-VDVILQLIDKAG---DFVSDDIWFRVVQFVTN 451 (1006)
Q Consensus 384 ~Iv~eLl~yl~~~---d~~~~~~lv~~I~~l-a----eky~~~~~w~-vd~ll~ll~~~g---~~v~~ei~~~i~~ii~~ 451 (1006)
.||..+ +-+. +..-+.|.+..++.. + ||++ .|. .+-+|..+..+. -.+.+++..+++++...
T Consensus 396 lIvssc---mlDi~pd~r~~~~E~v~~icK~~aevikEKip---l~~k~n~lL~a~~qgse~~f~v~~~iFsr~~~llk~ 469 (740)
T COG5537 396 LIVSSC---MLDIIPDSRENIVESVESICKIDAEVIKEKIP---LATKTNRLLEAMKQGSERYFVVCEEIFSRFVHLLKK 469 (740)
T ss_pred HHHHHH---HhcCCCcchHHHHHHHHHHHHHHHHHHHhhcc---hhhhhhhHHHHHHhhhhccchhHHHHHHHHHHHHHH
Confidence 333333 2222 122355556666543 2 4554 232 244454444432 23566777777776543
Q ss_pred CC---CcHHHHHHHHHHhhcCCchhhHHHH
Q 001845 452 NE---DLQPYAAAKAREYLDKPAIHETMVK 478 (1006)
Q Consensus 452 ~~---~l~~~a~~~l~~~L~~~~~~e~l~k 478 (1006)
.. +.--|-...+..+-...+...++++
T Consensus 470 v~ls~easvy~~t~iR~f~~ng~f~~pii~ 499 (740)
T COG5537 470 VELSFEASVYRITEIRRFFSNGEFTCPIIK 499 (740)
T ss_pred HHHhhhhhhhHHHHHHHHHhcCceechhHH
Confidence 22 2222334444444444444444444
No 261
>smart00340 HALZ homeobox associated leucin zipper.
Probab=31.80 E-value=26 Score=26.66 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=17.7
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 001845 18 NCPNKEQERLRVDKELGNIRT 38 (1006)
Q Consensus 18 ~~~~~~~e~~~I~~El~~Ir~ 38 (1006)
=|.+-.+|.+|.++|++++|.
T Consensus 13 cce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346677999999999999994
No 262
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=31.68 E-value=8.7e+02 Score=28.15 Aligned_cols=116 Identities=12% Similarity=0.171 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhc----C--CCCchhHHHHHHHHHHHccCCc--------------HH
Q 001845 288 HAVLFEALALVMHLDAE--KEMMSQCIALLGKFIA----V--REPNIRYLGLENMTRMLMVTDV--------------HD 345 (1006)
Q Consensus 288 ~aVl~eai~~i~~l~~~--~~l~~~~~~~L~~fL~----s--~~~nirylaL~~L~~l~~~~~~--------------~~ 345 (1006)
.+--..|+.++-.+... ..........+..+|. + .+..-+-.||..+..|+.+..+ .+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 45666777777665432 2222333334444443 2 3334567788888888875411 12
Q ss_pred HHHHhHHHhhhccc---CcChhHHHHHHHHhhhcc---CcccHHHHHHHHHHHhhhcChHhHHHHHH
Q 001845 346 IIKRHQAQIITSLK---DPDISIRRRALDLLYGMC---DVSNAKDIVEELLQYLSTADFAMREELSL 406 (1006)
Q Consensus 346 ~v~~~~~~i~~~L~---d~D~sIr~~aL~lL~~l~---n~~Nv~~Iv~eLl~yl~~~d~~~~~~lv~ 406 (1006)
.+..| |+.-|. +.-+-+|-+|++.++..- +++....++.-+..++...+.-++..++.
T Consensus 305 Ff~~~---v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 305 FFSQH---VLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp HHHHH---TCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHH---hHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhh
Confidence 33333 222233 344569999999998654 55667777888888888777666555443
No 263
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.64 E-value=44 Score=34.57 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred HHhhcCCCChhHHhHHHHhhhcCCCH-HhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHH
Q 001845 112 VRNDIIGRNETFQCLALTMVGNIGGR-EFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMA 189 (1006)
Q Consensus 112 l~KDL~s~n~~~~~lAL~~l~~i~~~-e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~ 189 (1006)
+.+=..|.|+..|-.|+-++...... .-.+.+...+..++. |...||||...-++.-+++++|+.+. +|++...
T Consensus 110 ~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~--d~~~~Vqkav~w~L~~~~~~~~~~v~--~~l~~~~ 184 (197)
T cd06561 110 LEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLH--DEEYFVQKAVGWALREYGKKDPERVI--AFLEKNG 184 (197)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhCHHHHH--HHHHHHH
Confidence 34445678888877777766664443 456677777777775 68999999999999999999998775 5554443
No 264
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=30.43 E-value=4.4e+02 Score=30.96 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=34.2
Q ss_pred HHHhhhcCCCHHhHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHhh
Q 001845 127 ALTMVGNIGGREFAESLAPDVQKLIISS---SCRPLVRKKAALCLLRLYRK 174 (1006)
Q Consensus 127 AL~~l~~i~~~e~~~~l~~~V~~~l~s~---~~~~~VRKkA~lal~~l~~~ 174 (1006)
.|.-.+++..+|+..++..-+..++.+. ..+.--|++|++|+..-|..
T Consensus 430 Gl~k~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i 480 (657)
T COG5117 430 GLVKYRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEI 480 (657)
T ss_pred HHHHHHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHH
Confidence 3455677888888888888888887632 12345688999999966644
No 265
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.37 E-value=1e+03 Score=28.55 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=74.9
Q ss_pred HHHhhcCCCChhHHhHHHHhhhcCCCH------HhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC-Ccccc--
Q 001845 111 TVRNDIIGRNETFQCLALTMVGNIGGR------EFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNP-DVVNV-- 181 (1006)
Q Consensus 111 sl~KDL~s~n~~~~~lAL~~l~~i~~~------e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p-~~v~~-- 181 (1006)
++-.-..|++...|++|+|.|++.... .+-..+...|...|-++ .+.-|-=.|+.|+.++..+-- +.+..
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~-~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD-LNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 334446788999999999999998763 33456666676777654 456788888888888776543 12210
Q ss_pred CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcC
Q 001845 182 DGWADRMAQLLDERDLGVLTSSMSLLVALVSNN 214 (1006)
Q Consensus 182 ~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~ 214 (1006)
=+...++..+.+|.++.+-.+|..++..+.+--
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 145678889999999999999999999888644
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=30.02 E-value=2.9e+02 Score=26.90 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCccccccCCCChhHHH
Q 001845 164 AALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQV 243 (1006)
Q Consensus 164 A~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqv 243 (1006)
.++-+.=+.+..++.-. +.+..|.+-|..+|+.|+.-|+.++..+.++-...|+..+. ...|+.
T Consensus 20 ~~l~icD~i~~~~~~~k--~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~-------------s~~fl~- 83 (133)
T smart00288 20 LILEICDLINSTPDGPK--DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVA-------------SKEFLN- 83 (133)
T ss_pred HHHHHHHHHhCCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-------------hHHHHH-
Confidence 34444555555554443 56777888888899999999999999999887766654442 123433
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q 001845 244 KTMRALQYFPTVEDPNTRRSLFEVLQRIL 272 (1006)
Q Consensus 244 klLrlL~~~~~~~d~~~~~~l~~~l~~il 272 (1006)
.+.+++..- ...+.+.+++..++...-
T Consensus 84 ~L~~l~~~~--~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 84 ELVKLIKPK--YPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHcCC--CCcHHHHHHHHHHHHHHH
Confidence 555555531 122335565555555443
No 267
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.87 E-value=2.2e+02 Score=31.91 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=79.0
Q ss_pred hhhhHHHHHhhccc-ChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhcCCC--HHh----HHHHHHHHHHHHhcCCCChh
Q 001845 87 KQVGYIVTSCLLNE-NHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGG--REF----AESLAPDVQKLIISSSCRPL 159 (1006)
Q Consensus 87 KrlgYL~l~~l~~~-~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~i~~--~e~----~~~l~~~V~~~l~s~~~~~~ 159 (1006)
-..-|+..+.|-.- .+| .+.+...+-|.|.+=...+-+|++|.++.. +|+ ...++..|.+-+++ .+.-
T Consensus 70 ~~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKN--lRS~ 144 (334)
T KOG2933|consen 70 HSVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKN--LRSA 144 (334)
T ss_pred ccHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC--hHHH
Confidence 35566666666543 234 355666677888887778877777775443 233 23444555555653 4667
Q ss_pred HHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhc---CCChhHHHHHHHHHHHHHhcC
Q 001845 160 VRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLD---ERDLGVLTSSMSLLVALVSNN 214 (1006)
Q Consensus 160 VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~---d~d~~V~~~a~~ll~~I~~~~ 214 (1006)
|-|.|++|+--+|..+-+.+. +..-..+..||. +.+-.|.-.|-.+|..+..+-
T Consensus 145 VsraA~~t~~difs~ln~~i~-~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 145 VSRAACMTLADIFSSLNNSID-QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 999999999999988888775 344555556663 355667777777777776554
No 268
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.80 E-value=7.8e+02 Score=27.04 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhhhccCcccHHHHHHHHHHHhhh---cChHhHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHhcCCcch
Q 001845 363 ISIRRRALDLLYGMCDVSNAKDIVEELLQYLST---ADFAMREELSLKAAILAEKFAPD-LSWYVDVILQLIDKAGDFVS 438 (1006)
Q Consensus 363 ~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~---~d~~~~~~lv~~I~~laeky~~~-~~w~vd~ll~ll~~~g~~v~ 438 (1006)
..++..| +.|..+|+..+...+-+-|..|... ...+|-..++. .+++-|-|+ ..-.+.+++.+|..+..-+.
T Consensus 130 ~~~~~~A-~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~---~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 130 QECIEIA-EALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVS---YLREAFFPDHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHHH-HHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHH---HHHHHhCchhHHHHHHHHHHHHhCCcHHHH
Confidence 3444444 6777788777777777777777764 23344444443 445677544 35677788888877666566
Q ss_pred HHHHHHHHHHHhc
Q 001845 439 DDIWFRVVQFVTN 451 (1006)
Q Consensus 439 ~ei~~~i~~ii~~ 451 (1006)
..+...+.-++..
T Consensus 206 ~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 206 RKTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHHhcc
Confidence 6666655555543
No 269
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=28.89 E-value=8.9e+02 Score=27.42 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=46.6
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCC-cc------ccCcHHHHHHhhhcCCChhHHHHHHHHHHH
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPD-VV------NVDGWADRMAQLLDERDLGVLTSSMSLLVA 209 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~-~v------~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~ 209 (1006)
..+++.+.+++++.|. +.+..||--|+-.+.++...+-. .+ .+.+..+.|...+...|..|.-+|+-.+..
T Consensus 77 ahlapnlmpdLQrGLi--addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikr 154 (524)
T KOG4413|consen 77 AHLAPNLMPDLQRGLI--ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKR 154 (524)
T ss_pred hhhchhhhHHHHhccc--CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4556777777777777 45666777777777776654431 11 123445555566666777888888777766
Q ss_pred HH
Q 001845 210 LV 211 (1006)
Q Consensus 210 I~ 211 (1006)
|.
T Consensus 155 ia 156 (524)
T KOG4413|consen 155 IA 156 (524)
T ss_pred HH
Confidence 65
No 270
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.44 E-value=1.4e+02 Score=28.76 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHhhC-CCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 001845 158 PLVRKKAALCLLRLYRKN-PDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALV 211 (1006)
Q Consensus 158 ~~VRKkA~lal~~l~~~~-p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~ 211 (1006)
++||+|.+.++..+.+.. |+.-+ ++.+.+.+++.. ++.-....+.+|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 689999999999998775 88775 788888888876 4444444555555444
No 271
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=28.28 E-value=4.8e+02 Score=26.47 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhCC---CccccCcHHHHHHhhhcC--CChhHHHHHHHHHHHHHhcChhhhhccCCCCCCCcc--cc
Q 001845 160 VRKKAALCLLRLYRKNP---DVVNVDGWADRMAQLLDE--RDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQE--YT 232 (1006)
Q Consensus 160 VRKkA~lal~~l~~~~p---~~v~~~~~~~~l~~lL~d--~d~~V~~~a~~ll~~I~~~~~~~~~~~v~~l~~~~e--y~ 232 (1006)
+=.-++-|+..+....- |.+. +.|+.++...++- .|..|+-.|++.|..++.+.+..|...-..+ +-+ -.
T Consensus 33 ~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~ev--t~~~Li~ 109 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEV--TLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccC--CHHHHHH
Confidence 33556667777665421 3444 5789999998863 4899999999999999998887664333222 100 00
Q ss_pred ccCCCChhHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 001845 233 YYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEV 267 (1006)
Q Consensus 233 ~~~~~~pwlqvklLrlL~~~~~~~d~~~~~~l~~~ 267 (1006)
.....++=.|.+.+.++..+....+...++.+.+.
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~ 144 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADDSKRKEIAET 144 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 11235677777777777754333233444434333
No 272
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=28.20 E-value=1.9e+03 Score=31.08 Aligned_cols=167 Identities=9% Similarity=0.120 Sum_probs=95.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhc-cCCCcCchhhhHHHHHhhccc---ChhHHHHHHH
Q 001845 35 NIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLI-SAPKYPEKQVGYIVTSCLLNE---NHDFLRLAIN 110 (1006)
Q Consensus 35 ~Ir~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~f~~~~vi~L~-~S~~~~~KrlgYL~l~~l~~~---~~e~~~LviN 110 (1006)
.|.+-|.+.+.+++.--...+.-|+.....- ++.- ...-|.+.+|+-++.-.+-.- .+.+=-.+.+
T Consensus 1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eE----------l~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~ 1140 (1780)
T PLN03076 1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEE----------LRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSD 1140 (1780)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhHHH----------HccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHH
Confidence 5677887776787765555554444432211 0000 112344444444433222111 1222233444
Q ss_pred HHHhhcCCCChhHHhHHHHhhhcCC-----CHH-----hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccc
Q 001845 111 TVRNDIIGRNETFQCLALTMVGNIG-----GRE-----FAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVN 180 (1006)
Q Consensus 111 sl~KDL~s~n~~~~~lAL~~l~~i~-----~~e-----~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~ 180 (1006)
.+.+=-.++|..++..|+..|-.+. ..| +-..+......++.. ..+.-||...+-|+.+|.....+.++
T Consensus 1141 hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~-s~~~eVrE~ILeCv~qmI~s~~~nIk 1219 (1780)
T PLN03076 1141 FFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNVK 1219 (1780)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444334455555555555433321 122 335666676666664 56789999999999999999988887
Q ss_pred cCcHHHHHHh---hhcCCChhHHHHHHHHHHHHHhc
Q 001845 181 VDGWADRMAQ---LLDERDLGVLTSSMSLLVALVSN 213 (1006)
Q Consensus 181 ~~~~~~~l~~---lL~d~d~~V~~~a~~ll~~I~~~ 213 (1006)
.+|-..+.- ...|++..++..|...+..|+.+
T Consensus 1220 -SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1220 -SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred -cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 689654432 23478888888888888877754
No 273
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=2.3e+02 Score=31.74 Aligned_cols=144 Identities=16% Similarity=0.163 Sum_probs=102.3
Q ss_pred HHHHHHHhCCC----CCchHHHHHHhccCCCcCchhhhHHHHHhhcccChh----HHHHHHHHHHhhcCCCChhHHhHHH
Q 001845 57 KMLYIYMLGYD----VDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHD----FLRLAINTVRNDIIGRNETFQCLAL 128 (1006)
Q Consensus 57 KLiyi~~lG~d----v~f~~~~vi~L~~S~~~~~KrlgYL~l~~l~~~~~e----~~~LviNsl~KDL~s~n~~~~~lAL 128 (1006)
...|+...-+. .+....++++.++|.+...|-=|.=.+..+...++| .+..+|=.+.|.+.+..--+---|.
T Consensus 71 ~~e~~~sk~l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~ 150 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAAC 150 (334)
T ss_pred cHHHhhhcccCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 45666665543 357788899999999999998888888888877765 3456777788888888776655555
Q ss_pred HhhhcC---CCHHhHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHH
Q 001845 129 TMVGNI---GGREFAESLAPDVQKLIIS-SSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSM 204 (1006)
Q Consensus 129 ~~l~~i---~~~e~~~~l~~~V~~~l~s-~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~ 204 (1006)
-+++.| -+..+.+.+-..|..++.. ..++.+||--|--+|-.+.. .+.+....+.|...+...++.+...+.
T Consensus 151 ~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~----~vtp~~~L~~L~~~~~~~n~r~r~~a~ 226 (334)
T KOG2933|consen 151 MTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN----HVTPQKLLRKLIPILQHSNPRVRAKAA 226 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh----ccChHHHHHHHHHHHhhhchhhhhhhh
Confidence 555554 4467777778888887763 35678888888777776652 255456667777777777777766554
No 274
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=27.30 E-value=75 Score=34.39 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=43.8
Q ss_pred CCChhHHHHHHHHHHHHHhhCCCcccc-----C------cHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 001845 155 SCRPLVRKKAALCLLRLYRKNPDVVNV-----D------GWADRMAQLLDERDLGVLTSSMSLLVALVS 212 (1006)
Q Consensus 155 ~~~~~VRKkA~lal~~l~~~~p~~v~~-----~------~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~ 212 (1006)
|.++.|-|+|+.|+..+|+..=+.+.. + .+-+.|..++++.++||-.+++-++..+..
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 679999999999999999874332210 1 334566778888899999999999998763
No 275
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=27.26 E-value=4.7e+02 Score=23.62 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=35.9
Q ss_pred EecceeEEEEEEeecCCCCcceeEEEEeCCCceeEEeecCCcccCCCCeeEEEEEEE
Q 001845 760 WRGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVM 816 (1006)
Q Consensus 760 ~~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~~tI~p~~q~q~~v~v~ 816 (1006)
.-|..-...+.+.|.+..+. .|.+.......-.+...+.+..|+||...+..+.+.
T Consensus 17 ~~g~~~~~~v~l~N~s~~p~-~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 17 FVGQTYSRTVTLTNTSSIPA-RFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred ccCCEEEEEEEEEECCCCCE-EEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence 34555677889999998875 466654331222233345558899998777666665
No 276
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.88 E-value=1.2e+03 Score=28.39 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcChhHHHHHHHHhhhcc-C-cccHHHHHHHHHHHhhh----cC
Q 001845 324 PNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMC-D-VSNAKDIVEELLQYLST----AD 397 (1006)
Q Consensus 324 ~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~-n-~~Nv~~Iv~eLl~yl~~----~d 397 (1006)
...|-+-++.|..... ..+++ .+...++..+.+- ..+.+++..+. . ...-..++++|+..+.. ..
T Consensus 340 ~~~r~~~~Dal~~~GT----~~a~~----~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~ 410 (574)
T smart00638 340 KKARRIFLDAVAQAGT----PPALK----FIKQWIKNKKITP-LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQ 410 (574)
T ss_pred HHHHHHHHHHHHhcCC----HHHHH----HHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcccccc
Confidence 5677777777655433 22343 1222233333321 12333333221 1 13346677777777763 35
Q ss_pred hHhHHHHHHHHHHHHhhcC
Q 001845 398 FAMREELSLKAAILAEKFA 416 (1006)
Q Consensus 398 ~~~~~~lv~~I~~laeky~ 416 (1006)
..++..++.+.+.++.++.
T Consensus 411 ~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 411 PYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788888888888887664
No 277
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=26.70 E-value=4.7e+02 Score=23.98 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=22.5
Q ss_pred EEeEecceeEEEEEEeecCCCCcceeEEEEeCC
Q 001845 757 KAEWRGHHGRLVLFLGNKNTSPLFSVQALILPP 789 (1006)
Q Consensus 757 k~~~~~~~~~i~l~~~Nks~~~lt~f~~~~~~p 789 (1006)
..+|.++ ....+.+.|.++.++++-++.+.-|
T Consensus 8 ~~~W~~G-f~~~v~v~N~~~~~i~~W~v~~~~~ 39 (101)
T PF00553_consen 8 TNSWGGG-FQGEVTVTNNGSSPINGWTVTFTFP 39 (101)
T ss_dssp EEESSSE-EEEEEEEEESSSSTEESEEEEEEES
T ss_pred ecccCCC-eEEEEEEEECCCCccCCEEEEEEeC
Confidence 3455444 4457888899999998888766655
No 278
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=26.37 E-value=3.5e+02 Score=29.51 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=54.4
Q ss_pred eEecceeEEEEEEeecCCCCcceeEEEEeC--CCc-eeEEeec---C--C-cccCCCCeeEEEEEEEecCCCCCCcEEEE
Q 001845 759 EWRGHHGRLVLFLGNKNTSPLFSVQALILP--PSH-LKMELSL---V--P-ETIPPRAQVQCPLEVMNLRPSRDVAVLDF 829 (1006)
Q Consensus 759 ~~~~~~~~i~l~~~Nks~~~lt~f~~~~~~--p~~-l~~~~~~---~--~-~tI~p~~q~q~~v~v~~~~~~~~~P~l~i 829 (1006)
.|=|......+-+.|.+..+++++.+.++- |.. ..+.+.. . + .+|.||+..+..+...+........+..+
T Consensus 10 iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~G~h~L~c~V 89 (249)
T PF06159_consen 10 IYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKELGNHTLVCTV 89 (249)
T ss_pred EeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeecCceEEEEEE
Confidence 344555666777888888889999887664 332 2333322 1 2 47899999999999998877777888899
Q ss_pred EEeeC
Q 001845 830 SYKFN 834 (1006)
Q Consensus 830 ~y~~~ 834 (1006)
+|...
T Consensus 90 sY~~~ 94 (249)
T PF06159_consen 90 SYTDP 94 (249)
T ss_pred EEecC
Confidence 99876
No 279
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=26.33 E-value=1.1e+03 Score=27.47 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHHHhh-----hcChHhHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 001845 379 VSNAKDIVEELLQYLS-----TADFAMREELSLKAAILAEKFAPD-LSWYVDVILQLIDKAGDFVSDDIWFRVVQFVT 450 (1006)
Q Consensus 379 ~~Nv~~Iv~eLl~yl~-----~~d~~~~~~lv~~I~~laeky~~~-~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~ 450 (1006)
+..++.+..+++.++- ..+.+.++++...+...++||-.- ...|..+|-++.....+. ...++..+.+.+.
T Consensus 271 ~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~l-V~~Lip~i~q~l~ 347 (373)
T PF14911_consen 271 EPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQL-VISLIPTIRQSLK 347 (373)
T ss_pred CcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHH
Confidence 3344444444444443 245688889999999999999643 345556665655554332 2233344444443
No 280
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=26.18 E-value=1.8e+02 Score=26.81 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=36.6
Q ss_pred ecceeEEEEEEeecCCCCcceeEEEE-----eCCCcee---EEeecCCcccCCCCeeEEEEEEEecC
Q 001845 761 RGHHGRLVLFLGNKNTSPLFSVQALI-----LPPSHLK---MELSLVPETIPPRAQVQCPLEVMNLR 819 (1006)
Q Consensus 761 ~~~~~~i~l~~~Nks~~~lt~f~~~~-----~~p~~l~---~~~~~~~~tI~p~~q~q~~v~v~~~~ 819 (1006)
-|....+.+.|.|.++.+++++++.+ .-+ |+. ........+|+||+.....+.+...+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 45668999999999999999977654 333 332 22122227899998888777776554
No 281
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=26.12 E-value=1.2e+03 Score=30.31 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhcccCcCh-hHHHHHHHHhhhccCcc----
Q 001845 307 MMSQCIALLGKFIA-VREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDI-SIRRRALDLLYGMCDVS---- 380 (1006)
Q Consensus 307 l~~~~~~~L~~fL~-s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~d~D~-sIr~~aL~lL~~l~n~~---- 380 (1006)
.+...-+....|+. ++..+.|-++|..+.++++.....-.+. +.++|..+++.+. .=-+.-|++|-.|+|+.
T Consensus 64 aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~--R~~FF~vI~~~p~~edL~~rLe~L~~LTDnG~~It 141 (1697)
T KOG3687|consen 64 AIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGIL--RALFFKVIKDYPSNEDLHERLEVLKALTDNGRHIT 141 (1697)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHhcCcchHHHHHHHHHHHHHhhCCcccc
Confidence 34444555556665 3445778888888888877654322232 2345555553221 11123456666666543
Q ss_pred cHHHHHHHHHH-H---------h-----------hhcChHhHHHHHHHHHHHHhhcCCC
Q 001845 381 NAKDIVEELLQ-Y---------L-----------STADFAMREELSLKAAILAEKFAPD 418 (1006)
Q Consensus 381 Nv~~Iv~eLl~-y---------l-----------~~~d~~~~~~lv~~I~~laeky~~~ 418 (1006)
|+++=+..++- + + ...|.++..-++.+++.+|.+++..
T Consensus 142 ~~Ee~iG~f~l~W~~~~l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~~c~lc~~t~~~ 200 (1697)
T KOG3687|consen 142 YLEEELGDFVLQWMDVGLSSEFLLVLVNLVKFNSCYLDEYIARLMVQMICLLCVRTASS 200 (1697)
T ss_pred chHHHHHHHHHHHHHhhcccHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhccc
Confidence 44433333221 1 1 1247788888899999888777643
No 282
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=5.6e+02 Score=29.78 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=71.5
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHccCCcHHHHHHhHHHhhhccc----CcChhHHHHHHHHh----hhccCcccHHHHH
Q 001845 315 LGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK----DPDISIRRRALDLL----YGMCDVSNAKDIV 386 (1006)
Q Consensus 315 L~~fL~s~~~nirylaL~~L~~l~~~~~~~~~v~~~~~~i~~~L~----d~D~sIr~~aL~lL----~~l~n~~Nv~~Iv 386 (1006)
|..-+.....++|-=+|..+..+....+ ..+.-|...++.++. |+|..+|....+++ +.+|-+. ....+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p--~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~ 139 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHP--AELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMV 139 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchH
Confidence 3334567788899999999998888754 446667666666544 88888888776654 4566655 55555
Q ss_pred HHHHHHhh----hcChHhHHHHHHHHHHHHhhcCCC
Q 001845 387 EELLQYLS----TADFAMREELSLKAAILAEKFAPD 418 (1006)
Q Consensus 387 ~eLl~yl~----~~d~~~~~~lv~~I~~laeky~~~ 418 (1006)
.=+..|+. ..-++++.+...-+..+++.|++-
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 55666665 457889988888888889988764
No 283
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=25.90 E-value=1.5e+02 Score=30.68 Aligned_cols=84 Identities=19% Similarity=0.404 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccCCc-HHHHHHhHHHhhhccc---CcChhHHHHHHHHhhhccCcccH
Q 001845 307 MMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDV-HDIIKRHQAQIITSLK---DPDISIRRRALDLLYGMCDVSNA 382 (1006)
Q Consensus 307 l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~~~-~~~v~~~~~~i~~~L~---d~D~sIr~~aL~lL~~l~n~~Nv 382 (1006)
.+.+.+.+|.+-|.++++.+.-.+|+.|.+|+...+. -+++.+|...++..++ +....+- -.++ | -...|+
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~g-d~i~--y--~~~~~~ 151 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLG-DGID--Y--RKRKNL 151 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCC-cccc--c--ccccch
Confidence 5667788888999999999999999999999765542 2566777777765554 2211110 0111 1 467888
Q ss_pred HHHHHHHHHHhhh
Q 001845 383 KDIVEELLQYLST 395 (1006)
Q Consensus 383 ~~Iv~eLl~yl~~ 395 (1006)
.+++.|-++-++.
T Consensus 152 ~dlI~etL~~lE~ 164 (183)
T PF10274_consen 152 GDLIQETLELLER 164 (183)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998888875
No 284
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.77 E-value=1e+03 Score=26.85 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=77.7
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHHHccCCcccccccCCChhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCC
Q 001845 244 KTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCIALLGKFIAVRE 323 (1006)
Q Consensus 244 klLrlL~~~~~~~d~~~~~~l~~~l~~il~~~~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l~~~~~~~L~~fL~s~~ 323 (1006)
.+++....+...++......+..+|..++..... .-.......+.++.++. .-...+-+-|++++
T Consensus 5 ~l~~~W~~~~~~n~~~~~~~~~~~L~~~l~~ls~------~~~~~~~g~~l~~~iL~---------~~~k~lyr~L~~~~ 69 (330)
T PF11707_consen 5 ELLQIWSYAAQVNNHSLLSLVSSVLALLLKKLSS------DLSFQSYGLELIRSILQ---------NHLKLLYRSLSSSK 69 (330)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHH---------HHHHHHHHHhCcCc
Confidence 5666676666543333333445666666522110 00112333344444433 22566777788777
Q ss_pred CchhHHHHHHHHHHHccCCcH--HHHHHh----HHHhhhccc----C--cC-------hhHHHHHHHHhhhccCcccHHH
Q 001845 324 PNIRYLGLENMTRMLMVTDVH--DIIKRH----QAQIITSLK----D--PD-------ISIRRRALDLLYGMCDVSNAKD 384 (1006)
Q Consensus 324 ~nirylaL~~L~~l~~~~~~~--~~v~~~----~~~i~~~L~----d--~D-------~sIr~~aL~lL~~l~n~~Nv~~ 384 (1006)
+.+.-.+|+.|..|+.-.+.. ..|-++ ...+-.++. + .+ .+||+..++.+..+....+...
T Consensus 70 ~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~ 149 (330)
T PF11707_consen 70 PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPEL 149 (330)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHH
Confidence 777779999999999833211 001110 011111111 1 11 2888888888887766554433
Q ss_pred H---------HHHHHHHhhhcChHhHHHHHHHHH
Q 001845 385 I---------VEELLQYLSTADFAMREELSLKAA 409 (1006)
Q Consensus 385 I---------v~eLl~yl~~~d~~~~~~lv~~I~ 409 (1006)
. +.-+++++...++++...++..+.
T Consensus 150 ~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~ 183 (330)
T PF11707_consen 150 KRDLLSQKKLMSALFKGLRKDPPETVILILETLK 183 (330)
T ss_pred HHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHH
Confidence 2 344455666655566555555554
No 285
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=24.32 E-value=1.1e+03 Score=31.54 Aligned_cols=169 Identities=14% Similarity=0.193 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC-CcH-HHHHHhHHHhhhcccCcChhHHHHHHHHhhhccCcc----
Q 001845 307 MMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT-DVH-DIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVS---- 380 (1006)
Q Consensus 307 l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~-~~~-~~v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~---- 380 (1006)
.+....+.+..++....-++|.=+|..+....... +.. ..+......++..|.|.|..++..|...|......-
T Consensus 164 ~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~ 243 (1549)
T KOG0392|consen 164 LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLM 243 (1549)
T ss_pred hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhh
Confidence 45555666666555444555555555444433311 111 122234455667788888889998888887665433
Q ss_pred --cHHHHHHHHHHHhhhcChHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCcHHH
Q 001845 381 --NAKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPY 458 (1006)
Q Consensus 381 --Nv~~Iv~eLl~yl~~~d~~~~~~lv~~I~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~ 458 (1006)
.+..|+..+..++..-|+ +-.. ...|..+-.++.... -+.-+....... .-+..+.|-.++.-|.. .+.-
T Consensus 244 ~~~i~~lv~~l~~~l~~ldd-l~~s-~~si~~ll~~l~~~~--evl~l~~~~n~~-~~Lvp~~~p~l~~~i~s---v~~a 315 (1549)
T KOG0392|consen 244 VQKIAKLVHTLWSFLLELDD-LSSS-TASIMHLLDELCIEN--EVLDLFEQQNLE-VGLVPRLWPFLRHTISS---VRRA 315 (1549)
T ss_pred HhHHHHHHHHHHHHHHHhhh-cchh-hHHHHHHHHHHhhhH--HHHHHHHHhhhh-hccchhhHHHHHHHHHH---HHHH
Confidence 344556666666666554 2222 222322222222111 111111111111 23566677776665533 4455
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHhhhcc
Q 001845 459 AAAKAREYLDKPAIHETMVKVSAYLLGE 486 (1006)
Q Consensus 459 a~~~l~~~L~~~~~~e~l~k~~~wilGE 486 (1006)
++..+..+++...-+.. .-+|++|.
T Consensus 316 ~l~~l~~lle~~~qs~~---~~~~~l~~ 340 (1549)
T KOG0392|consen 316 ALETLAMLLEADDQSDS---WQIRILGK 340 (1549)
T ss_pred HHHHHHHHHhcCCCCCc---cchhhhHH
Confidence 67777777764322221 23566664
No 286
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=24.32 E-value=4.3e+02 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhh-cChHhHHHHHHHHHHHH
Q 001845 384 DIVEELLQYLST-ADFAMREELSLKAAILA 412 (1006)
Q Consensus 384 ~Iv~eLl~yl~~-~d~~~~~~lv~~I~~la 412 (1006)
.+++-|++.++. .+..+|+|.++-+|+|.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILG 39 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 456666777765 35788888888888875
No 287
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=24.13 E-value=9.4e+02 Score=27.51 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=63.1
Q ss_pred HHHhHHHhhhcccCcChhHHHHHHHHhhhccCcccHHHHHHHHHHHhhhc-------ChHhHHHHHHHHHHHHhhcCCCh
Q 001845 347 IKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTA-------DFAMREELSLKAAILAEKFAPDL 419 (1006)
Q Consensus 347 v~~~~~~i~~~L~d~D~sIr~~aL~lL~~l~n~~Nv~~Iv~eLl~yl~~~-------d~~~~~~lv~~I~~laeky~~~~ 419 (1006)
.+.|...|...+.+++..-|..||+- |-++.-+..++..+..|+.+. |...-..++.-+..|...=.=..
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~s---L~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQS---LRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH---hccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence 44455566666666666666666554 557777888888888887642 22222223333322322111122
Q ss_pred hhHHHHHHHHHHh----c--CC--------cchHHHHHHHHHHHh----cCCCcHHHHHHHHHHhhcCCch
Q 001845 420 SWYVDVILQLIDK----A--GD--------FVSDDIWFRVVQFVT----NNEDLQPYAAAKAREYLDKPAI 472 (1006)
Q Consensus 420 ~w~vd~ll~ll~~----~--g~--------~v~~ei~~~i~~ii~----~~~~l~~~a~~~l~~~L~~~~~ 472 (1006)
+-|+-.++..+-. . +. .+.+.....+.+|+. .++.++......+.+.+-++..
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK 323 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC
Confidence 3344333322211 1 10 122222233333433 3678888888888888876543
No 288
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.95 E-value=5.4e+02 Score=25.13 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhhhccC
Q 001845 162 KKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCL 222 (1006)
Q Consensus 162 KkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~~~~v 222 (1006)
-.+++-+.-+.+..++... +.+..|.+-|..+++.|++-|+.++..+.++-...|+..+
T Consensus 23 w~~~l~icD~i~~~~~~~k--ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGAK--EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHHHHHHHTSTTHHH--HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3556666667777755554 6677888888889999999999999999998877776554
No 289
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=22.72 E-value=2.1e+02 Score=23.02 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=29.2
Q ss_pred ecceeEEEEEEeecCCCCcceeEEEEeCCCceeEE
Q 001845 761 RGHHGRLVLFLGNKNTSPLFSVQALILPPSHLKME 795 (1006)
Q Consensus 761 ~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~ 795 (1006)
-|..+...+.+.|....+.+++.++-.-|.++...
T Consensus 10 ~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v 44 (53)
T TIGR01451 10 IGDTITYTITVTNNGNVPATNVVVTDILPSGTTFV 44 (53)
T ss_pred CCCEEEEEEEEEECCCCceEeEEEEEcCCCCCEEE
Confidence 35568889999999999999998887778888775
No 290
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=22.26 E-value=3.1e+02 Score=28.86 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=53.7
Q ss_pred EEEEEEeecCCCCcceeEEEEeCCCceeEEeecCCcccCCCCeeEEEEEEEecCCCCCCcEEEEEEeeCCceEEEEeccC
Q 001845 766 RLVLFLGNKNTSPLFSVQALILPPSHLKMELSLVPETIPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLP 845 (1006)
Q Consensus 766 ~i~l~~~Nks~~~lt~f~~~~~~p~~l~~~~~~~~~tI~p~~q~q~~v~v~~~~~~~~~P~l~i~y~~~g~~~~~~LklP 845 (1006)
.-.|.+.|++..++ +|.+....|+.+-++ |=...|.|++.++..+.+. +..+-|.- .|+|...+-...++++
T Consensus 20 ke~~sv~Nnspepv-gfKVKTTaPK~YcVR--PN~g~Iep~stv~VeVilq---~l~eEpap--dfKCrdKFLiqs~~~~ 91 (242)
T COG5066 20 KEMFSVQNNSPEPV-GFKVKTTAPKDYCVR--PNMGLIEPMSTVEVEVILQ---GLTEEPAP--DFKCRDKFLIQSYRFD 91 (242)
T ss_pred ceeeEeecCCCCce-eEEeeccCCcceeEc--CCCceeccCCeeEEEEEee---ccccCCCC--CccccceeEEEEeccC
Confidence 33566779988887 588877778887664 2227889998777555433 23332221 2445543322233322
Q ss_pred ceeecccccccCChhhHHHHhhhcC
Q 001845 846 AVLNKFLQPITVSAEEFFPQWRSLS 870 (1006)
Q Consensus 846 i~~~kf~~p~~~~~~~F~~rW~~i~ 870 (1006)
..++..+|-..|.++.
T Consensus 92 ---------~~l~g~d~ad~wt~~s 107 (242)
T COG5066 92 ---------WRLSGSDFADHWTSSS 107 (242)
T ss_pred ---------hhhccchHHHHHHhhc
Confidence 2345689999999998
No 291
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=1.5e+02 Score=30.40 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=43.5
Q ss_pred CHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhh-cCCChhHHHHH
Q 001845 136 GREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLL-DERDLGVLTSS 203 (1006)
Q Consensus 136 ~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL-~d~d~~V~~~a 203 (1006)
+||....|...|..-.++ +.| -+-|-+|++|+|+.+|+.+....-...+.+.| .=+++...++-
T Consensus 21 NPE~latLe~yVq~qak~---ntY-dleanL~vLkLYQfnP~~~nt~itaqILlKaL~~lP~tDF~l~k 85 (217)
T KOG3252|consen 21 NPENLATLENYVQAQAKE---NTY-DLEANLAVLKLYQFNPEFFNTTITAQILLKALTNLPHTDFTLAK 85 (217)
T ss_pred ChhHHHHHHHHHHHHHhc---ccc-chhHHHHHHHHHhcCHHHhhhHHHHHHHHHHHhcCCCcchhHHH
Confidence 488888899998877653 444 47899999999999999885333344444444 33555544443
No 292
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=21.76 E-value=3.7e+02 Score=28.67 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChhhh
Q 001845 155 SCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAY 218 (1006)
Q Consensus 155 ~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~~~ 218 (1006)
..++-.|+.|+.+.+.-.++.++.. .+.+.+..+|.|++..|.-+.==+|-++.++.++.|
T Consensus 129 ~~~~w~rraaiv~~l~~~k~~~~~~---~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~~ 189 (222)
T COG4912 129 EDNRWERRAAIVHQLVYKKKTLDLL---EIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNELW 189 (222)
T ss_pred cchHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHHH
Confidence 3568999999998887776666655 688999999999999999888888888888666654
No 293
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=21.55 E-value=2.9e+02 Score=24.74 Aligned_cols=65 Identities=11% Similarity=0.290 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCCccccCcHHHHHH---hhhcCCChhHHHHHHHHH
Q 001845 141 ESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMA---QLLDERDLGVLTSSMSLL 207 (1006)
Q Consensus 141 ~~l~~~V~~~l~s~~~~~~VRKkA~lal~~l~~~~p~~v~~~~~~~~l~---~lL~d~d~~V~~~a~~ll 207 (1006)
..+..+...++.+ ..+.-||...+-|+.++...+.+.++ .+|...+. ....|.+..++..|...+
T Consensus 16 ~~fL~Pf~~i~~~-~~~~~vre~il~ci~qil~~~~~~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSN-NPSIDVRELILECILQILQSRGENIK-SGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHhHHHHH-hccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455555555543 57889999999999999999998887 68864443 333566777776666544
No 294
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.13 E-value=1.8e+02 Score=37.88 Aligned_cols=110 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhHHHHHhhcccChhHHHHHHHHHHhhcCCCChhHHhHHHHhhhc----CCCHHhHHHHHHHHHHHHhcCCCChhHHHHH
Q 001845 89 VGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGN----IGGREFAESLAPDVQKLIISSSCRPLVRKKA 164 (1006)
Q Consensus 89 lgYL~l~~l~~~~~e~~~LviNsl~KDL~s~n~~~~~lAL~~l~~----i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA 164 (1006)
|.|++=+++.+...|+ .+.||+--+..||. ..+--+-.....++-=.|. |.+.-||++.
T Consensus 284 i~~if~sVFVHRYRDV---------------~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLs--Dk~~~VRl~~ 346 (1048)
T KOG2011|consen 284 INDIFDSVFVHRYRDV---------------DPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLS--DKNGTVRLRC 346 (1048)
T ss_pred HHHHhhheeeeecccC---------------chHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceee--cCccHHHHHH
Q ss_pred HHHHHHHHhhCCCcccc----CcHHHHHHhhhcCCChhHHHHHHHHHHHHHhcChh
Q 001845 165 ALCLLRLYRKNPDVVNV----DGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE 216 (1006)
Q Consensus 165 ~lal~~l~~~~p~~v~~----~~~~~~l~~lL~d~d~~V~~~a~~ll~~I~~~~~~ 216 (1006)
+-++.+||.+.-+.-.. +.|-+||..+. |+|..+-..++.+..-+....++
T Consensus 347 lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~~~~~~g 401 (1048)
T KOG2011|consen 347 LKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCLLLSSSG 401 (1048)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHhccc
No 295
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=20.66 E-value=1.8e+03 Score=27.96 Aligned_cols=218 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---------HHhhCCCccccCcHHHHHHhhhcCCChhHHHHHHHHH
Q 001845 137 REFAESLAPDVQKLIISSSCRPLVRKKAALCLLR---------LYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLL 207 (1006)
Q Consensus 137 ~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~~---------l~~~~p~~v~~~~~~~~l~~lL~d~d~~V~~~a~~ll 207 (1006)
.++.+.+..++.+++.+-...| |.--.+.-++ +++.++.-. .|.-+|.-+|+..+|.+...+++-+
T Consensus 149 ~~iL~~ll~~Lq~lv~~~~~~~--~~ipfL~~l~~~~~~Lc~~lL~~n~~r~---~w~~rLL~lL~~~~Psi~~~~~~~l 223 (696)
T PF14838_consen 149 DRILQLLLQDLQKLVRNRGPQP--RNIPFLEELKAHITELCKELLSLNRKRQ---QWAHRLLCLLSSQHPSIAIEAISYL 223 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCc--ccchHHHHHHHHHHHHHHHHhccchHHH---HHHHHHHHHHhcCCCchHHHHHHHH
Q ss_pred HHHHhcChhhhhccCCCCCCCccccccCCCChhHHHHHHHHHhcCCC----CCChhhHHHHHHHHHHHHccCCccccccc
Q 001845 208 VALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPT----VEDPNTRRSLFEVLQRILMGTDVVKNVNK 283 (1006)
Q Consensus 208 ~~I~~~~~~~~~~~v~~l~~~~ey~~~~~~~pwlqvklLrlL~~~~~----~~d~~~~~~l~~~l~~il~~~~~~~~~~~ 283 (1006)
..-++ +|.-.--++|+++.... .-..-....+.+++.++..++.+.+
T Consensus 224 L~~A~-------------------------~~~~l~lli~L~~~~~~~~~~~~~~l~~~vle~~l~~i~~~~lt~~---- 274 (696)
T PF14838_consen 224 LTKAQ-------------------------NPEHLALLIRLYAGLSVVNFPSLPGLFPAVLEQCLRQIHTNTLTPT---- 274 (696)
T ss_pred HHhcC-------------------------CHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHhcCCCCcH----
Q ss_pred CCChhHHHHHHHHHHHhcCCc------------HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHccC-------CcH
Q 001845 284 NNASHAVLFEALALVMHLDAE------------KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVT-------DVH 344 (1006)
Q Consensus 284 ~n~~~aVl~eai~~i~~l~~~------------~~l~~~~~~~L~~fL~s~~~nirylaL~~L~~l~~~~-------~~~ 344 (1006)
...=++.=+..+++++.+ .+.+......+..+|.++++++--.+.+.|..+-... ...
T Consensus 275 ---e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L 351 (696)
T PF14838_consen 275 ---EATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDPEVAHAAVKLLDLLPLPEKAPLSPSLLL 351 (696)
T ss_pred ---HHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCccccCCCHHHHH
Q ss_pred HHHHHhHHHhhhcccCcChhHHH----HHHHHhhhccCc--ccHHHHHHHHHH
Q 001845 345 DIIKRHQAQIITSLKDPDISIRR----RALDLLYGMCDV--SNAKDIVEELLQ 391 (1006)
Q Consensus 345 ~~v~~~~~~i~~~L~d~D~sIr~----~aL~lL~~l~n~--~Nv~~Iv~eLl~ 391 (1006)
...+.-...||.||+..|.+=+. ++=.+|.++|.. ..-..++++|++
T Consensus 352 ~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~vLr~LlE 404 (696)
T PF14838_consen 352 KLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAVLRELLE 404 (696)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
No 296
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=20.51 E-value=1.7e+02 Score=21.72 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=15.5
Q ss_pred HHHHHHHhhhcChHhHHHHHHHHHHHH
Q 001845 386 VEELLQYLSTADFAMREELSLKAAILA 412 (1006)
Q Consensus 386 v~eLl~yl~~~d~~~~~~lv~~I~~la 412 (1006)
+..|.+.+...|.+++++.+-+++.|+
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 344555555566666666666665554
No 297
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=20.47 E-value=1.8e+03 Score=27.92 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=53.7
Q ss_pred HHhhhccccccccCCCCCChHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhccCCChH-
Q 001845 480 SAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADP-ELQNQIWAIFNKYESCIEVE- 557 (1006)
Q Consensus 480 ~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~iLta~~Kl~~~~~~~~~-e~~~~v~~vl~~~~~s~d~E- 557 (1006)
-+|.+|-+...+ ..|+++.|...+...+.+.-..++..+.+. +-..+| .+++.+..+-.... +...+
T Consensus 433 ylynF~ivs~~L-------iydiI~kl~~~l~e~~ve~ll~ii~~~G~~---LRkDDp~alk~~i~eiq~~a~-~a~~s~ 501 (822)
T KOG2141|consen 433 YLYNFGIVSCSL-------IYDIIRKLAENLNETNVEALLTIIANCGFS---LRKDDPLALKDIITEIQSKAA-SAKISA 501 (822)
T ss_pred HHHHhhcccHHH-------HHHHHHHHHhchhhhhHHHHHHHHHHccch---hcCCChHHHHHHHHHHHHHhh-cCCccc
Confidence 467777776554 468888888888777766655555444441 223334 45666666655543 22333
Q ss_pred HHHHHHHHHHHhcchHHHHHhhhcCCC
Q 001845 558 IQQRAVEYFALSRKGAALMDILAEMPK 584 (1006)
Q Consensus 558 vqqRA~eyl~Ll~~~~~~~~vl~~mP~ 584 (1006)
.+-|.++.+.-+. .+.+.=+.+.|-
T Consensus 502 ~~pR~rFmleti~--aLKnN~~kki~~ 526 (822)
T KOG2141|consen 502 ISPRLRFMLETIS--ALKNNKLKKIPY 526 (822)
T ss_pred cchHHHHHHHHHH--HHhcCCCcCCCc
Confidence 5888887776554 455544444443
Done!