Query 001845
Match_columns 1006
No_of_seqs 277 out of 1349
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 17:11:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001845.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1140-1144//hhsearch_pdb/001845hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 1.0 1 1 955.5 51.5 595 2-600 6-620 (621)
2 1w63_A Adapter-related protein 1.0 1 1 824.4 51.8 577 1-596 4-603 (618)
3 2vgl_B AP-2 complex subunit be 1.0 1 1 656.7 39.8 523 30-591 12-554 (591)
4 3tjz_B Coatomer subunit gamma; 1.0 1 1 438.2 14.0 323 32-380 27-355 (355)
5 3hs8_A Adaptor protein complex 1.0 1 1 427.1 26.6 235 730-966 35-273 (273)
6 1kyf_A Alpha-adaptin C; protei 1.0 1 1 422.6 28.8 238 727-966 6-247 (247)
7 1pzd_A Coatomer gamma subunit; 1.0 1 1 150.6 21.7 227 697-962 69-321 (322)
8 1r4x_A Gamma1-COP, coatomer ga 1.0 1 1 148.4 22.1 228 697-962 22-274 (275)
9 2g30_A AP-2 complex subunit be 1.0 1 1 138.7 22.1 217 739-967 36-257 (258)
10 1b3u_A Protein (protein phosph 1.0 1 1 123.0 28.2 474 73-570 90-586 (588)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=955.48 Aligned_cols=595 Identities=47% Similarity=0.808 Sum_probs=559.9
Q ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 78888867999988527999589999999999999998112899998989999999999999089987447888884069
Q 001845 2 ALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISA 81 (1006)
Q Consensus 2 ~~~~mrgL~~fI~~ir~~~~~~~e~~~i~~El~~IR~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~fg~~~vi~Li~S 81 (1006)
+.++||||++||++||+|+++++|+++|++|+++||++|++.++++.++|+++++|++|++|+|||++|||++++++++|
T Consensus 6 ~~~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s 85 (621)
T 2vgl_A 6 KGEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSS 85 (621)
T ss_dssp ---CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 68874369999999871798777999999999999999743778998999999999999998098886168999999648
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99673156678887201348357999999999532798856796898763137987769877999999772389875699
Q 001845 82 PKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVR 161 (1006)
Q Consensus 82 ~~~~~KrigYL~l~~l~~~~~el~~L~iNsl~kDL~s~n~~~~~LAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VR 161 (1006)
+++++||+||||++.++++++|+++|+||+|+|||+|+||++||+|||++|+|++++|++.+.++|++++.++|.+||||
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VR 165 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVK 165 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 97899999999999983688289999999998765899898999999996655979999999999999981799977999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCC-----------CCC-C
Q ss_conf 9999999999842898645676799999650699933899999999999850912231007878-----------888-5
Q 001845 162 KKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKC-----------DVP-Q 229 (1006)
Q Consensus 162 KkA~lal~kl~~~~P~~i~~~~~~~~l~~lL~D~d~~V~~~a~~ll~~i~~~~~~~~~~~i~~l-----------~~~-~ 229 (1006)
|+|++|++|+|+.+|+.++.++|.+++.++|+|+|++|+.+|+.++.+|++++++.|..++|++ +++ +
T Consensus 166 K~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~ 245 (621)
T 2vgl_A 166 QSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQ 245 (621)
T ss_dssp HHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCS
T ss_pred HHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999749100571239999999847998029999999999999969698998889999999999867899862
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-CCCC--CCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 3311489984489999999835999999556889999999998267-7666--555578704799999999871389488
Q 001845 230 EYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGT-DVVK--NVNKNNASHAVLFEALALVMHLDAEKE 306 (1006)
Q Consensus 230 ey~~~~~~~pWlqvkllrlL~~~~~~~d~~~~~~l~~~l~~il~~t-~~~~--~~~~~n~~~aVl~eai~~i~~l~~~~~ 306 (1006)
||.|+++++||+|++++++|+.|++.+|++..+.+++++.++++.. +.++ .++|+|++++|+|||++++++++++.+
T Consensus 246 ~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~ 325 (621)
T 2vgl_A 246 DYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN 325 (621)
T ss_dssp TTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred CHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 00115899963999999999872888888999999999999998613476434534342388899999999996488499
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99999999998540899853688999999977357717899985877412265-76754799899885311691429999
Q 001845 307 MMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDI 385 (1006)
Q Consensus 307 l~~~~~~~L~~fL~s~~~nirYl~L~~l~~l~~~~~~~~~v~~~~~~i~~~L~-d~D~sIr~~aLdlL~~l~n~~Nv~~I 385 (1006)
++..+++.|++||.++++|+||++|+++.+++...|.++.+++|+..|+.||+ |+|.+||++|||+|+.|||++|++.|
T Consensus 326 ~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~I 405 (621)
T 2vgl_A 326 LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQI 405 (621)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999999854899325999999999998436857999999999999965699875999999999998085359999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999975215957599999999999863079836699999999985088616899999999884198848999999997
Q 001845 386 VEELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKARE 465 (1006)
Q Consensus 386 v~eLl~yl~~~d~~~r~~lv~kI~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~ 465 (1006)
++||+.|+..+|.+||.+++.+|+.+|+||+++.+||+++++++++.+|+++.+|+|.++++++.++|++|+|++.++++
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~ 485 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFE 485 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999866888899999999999986689689999999999986042136999999999973876699999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 40598515677998886420000000279999947899999851899876589999999999973219999568999999
Q 001845 466 YLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWA 545 (1006)
Q Consensus 466 ~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~lLta~~Kl~~~~~~~~~e~~~~i~~ 545 (1006)
+++++..++.++++++||+||||+.+.+.++++|.++++.+.++|..++..||+++|||++|++.+ +|++++.+..
T Consensus 486 ~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~----~p~~~~~i~~ 561 (621)
T 2vgl_A 486 ALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNL----FPEVKATIQD 561 (621)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----CHHHHHHHHH
T ss_conf 873853349999999999644487741467777789999999875348877999999999999987----7478999999
Q ss_pred HHHHHCC--CCCHHHHHHHHHHHHHHCC--HHHHHHHHHCCCCCCCCCHHHHHHHHHCC
Q ss_conf 9987205--9995899999999997230--48898863049999943026755432003
Q 001845 546 IFNKYES--CIEVEIQQRAVEYFALSRK--GAALMDILAEMPKFPERQSSLIKKAEDVE 600 (1006)
Q Consensus 546 vl~~~~~--s~d~EvqqRA~ey~~Ll~~--~~~~~~vl~~mP~~~~~~~~ll~~l~~~~ 600 (1006)
+|+.+.+ |.|+||||||+||++|++. +++++.++++||+|++++++|++||+.+.
T Consensus 562 ~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~~~~ll~~l~~~~ 620 (621)
T 2vgl_A 562 VLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKKK 620 (621)
T ss_dssp HHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC------------
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 99997058998979999999999998569999998885138989976429999987425
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=824.39 Aligned_cols=577 Identities=29% Similarity=0.512 Sum_probs=524.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 97888886799998852799958999999999999999811289999898999999999999908998744788888406
Q 001845 1 MALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLIS 80 (1006)
Q Consensus 1 ~~~~~mrgL~~fI~~ir~~~~~~~e~~~i~~El~~IR~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~fg~~~vi~Li~ 80 (1006)
|.|+.+++|++||++||+|+++++|+++|++|+++||+.|+++ +.++|+++++|++|++|+|||++|+|++++++++
T Consensus 4 ~~~~~~~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~---~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~ 80 (618)
T 1w63_A 4 MSMPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREE---DNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA 80 (618)
T ss_dssp --CCCCCCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTT---CTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 8788852399999998718986889999999999999986379---9899999999999999749988505899999981
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99967315667888720134835799999999953279885679689876313798776987799999977238987569
Q 001845 81 APKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLV 160 (1006)
Q Consensus 81 S~~~~~KrigYL~l~~l~~~~~el~~L~iNsl~kDL~s~n~~~~~LAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~V 160 (1006)
|+++++||+||||++.++++++|+++|+||+|+|||+|+||.+|++||++||+|+++++++.+.+.|.+++. |++|||
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~--~~~~~V 158 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLK--TSNSYL 158 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--SCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC--CCCHHH
T ss_conf 886688887999999981789189999999998766898784899999998862989999999999999975--998799
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHH---HHHCCCCCC----------CC
Q ss_conf 99999999999842898645676799999650699933899999999999850912---231007878----------88
Q 001845 161 RKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE---AYWSCLPKC----------DV 227 (1006)
Q Consensus 161 RKkA~lal~kl~~~~P~~i~~~~~~~~l~~lL~D~d~~V~~~a~~ll~~i~~~~~~---~~~~~i~~l----------~~ 227 (1006)
||+|++|+.++|+.+|+.+. .|.+.+..+|+|+|++|+.+|+.++.+|+.++|+ .|..++|.+ ++
T Consensus 159 Rk~A~~al~~l~~~~p~~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~ 236 (618)
T 1w63_A 159 RKKAALCAVHVIRKVPELME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGY 236 (618)
T ss_dssp HHHHHHHHHHHHHHCGGGGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999987958799--9999999982799773999999999999983958899999989999999999872799
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 85331148998448999999983599999955688999999999826776665555787047999999998713894889
Q 001845 228 PQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEM 307 (1006)
Q Consensus 228 ~~ey~~~~~~~pWlqvkllrlL~~~~~~~d~~~~~~l~~~l~~il~~t~~~~~~~~~n~~~aVl~eai~~i~~l~~~~~l 307 (1006)
+++|.|+++++||+|++++++|+.|++. |++..+.+.+++.+++..++. .+|+.++|+|||+++++.+...+.+
T Consensus 237 ~~~~~~~~~~~~~~q~~il~~L~~l~~~-~~~~~~~~~~~L~~l~~~~~~-----~~~~~~aV~~ea~~~i~~l~~~~~l 310 (618)
T 1w63_A 237 SPEHDVSGISDPFLQVRILRLLRILGRN-DDDSSEAMNDILAQVATNTET-----SKNVGNAILYETVLTIMDIKSESGL 310 (618)
T ss_dssp CTTTCSSSSSCHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHHHTSCC-----SSTHHHHHHHHHHHHHHHSCCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9543226889870999999999873899-979999999999999735645-----5544789999999999954887799
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999999985408998536889999999773577178999858774122657675479989988531169142999999
Q 001845 308 MSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVE 387 (1006)
Q Consensus 308 ~~~~~~~L~~fL~s~~~nirYl~L~~l~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aLdlL~~l~n~~Nv~~Iv~ 387 (1006)
...+++.|++||.++++|+||++|++|..++...| ..+++|+..++.|++|+|.+||++|+++|+.|+|++|++.|++
T Consensus 311 ~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~ 388 (618)
T 1w63_A 311 RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMK 388 (618)
T ss_dssp HHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999999747997437999999999986088--9999999999987159996699999999999716411999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99997521595759999999999986307983669999999998508861689999999988419884899999999740
Q 001845 388 ELLQYLSTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYL 467 (1006)
Q Consensus 388 eLl~yl~~~d~~~r~~lv~kI~~laeky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L 467 (1006)
||+.|+.+.|.+||.+++.+|+.+|++|+++..||+++++++++..|+++.+++|.++++++.++|+++++++.++++++
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l 468 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAI 468 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999872889999999999999999857508899999999998635314799999999999568568999999999997
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCC------C-CCCHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 598515677998886420000000279------9-99947899999851--89987658999999999997321999956
Q 001845 468 DKPAIHETMVKVSAYLLGEYSHLLARR------P-GCSPKEIFSIIHEK--LPTVSMSTVAILLSTYAKILMHTQPADPE 538 (1006)
Q Consensus 468 ~~~~~~e~l~k~~~wilGEyg~~i~~~------~-~~~~~~~~~~l~~~--~~~~s~~tr~~lLta~~Kl~~~~~~~~~e 538 (1006)
+++..++.++++++|++||||+.+.+. | .+.|.++++++... .+.+++.||+++|+|++|++.+ +|+
T Consensus 469 ~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~----~~~ 544 (618)
T 1w63_A 469 LGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR----FTC 544 (618)
T ss_dssp HHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT----CSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----CCC
T ss_conf 4523328999999999823587751465442124577889999999999744479799999999999999985----844
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 899999999872059995899999999997230-4889886304999994302675543
Q 001845 539 LQNQIWAIFNKYESCIEVEIQQRAVEYFALSRK-GAALMDILAEMPKFPERQSSLIKKA 596 (1006)
Q Consensus 539 ~~~~i~~vl~~~~~s~d~EvqqRA~ey~~Ll~~-~~~~~~vl~~mP~~~~~~~~ll~~l 596 (1006)
..+.+..+|+.+..|.|+||||||+||++|+.. +++.+.++++||+|++++.....++
T Consensus 545 ~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~~~~~~vl~~~P~~~~~~~~~~~~~ 603 (618)
T 1w63_A 545 TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNGPSEI 603 (618)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTHHHHHHSCCCCCCC---------
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 69999999998358999899999999999980749999877323899985666886533
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=656.71 Aligned_cols=523 Identities=18% Similarity=0.273 Sum_probs=455.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999981128999989899999999999990899874478888840699967315667888720134835799999
Q 001845 30 DKELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAI 109 (1006)
Q Consensus 30 ~~El~~IR~~f~~~~~l~~~~kkk~v~KLiyi~~lG~dv~fg~~~vi~Li~S~~~~~KrigYL~l~~l~~~~~el~~L~i 109 (1006)
..|+++||+.|+++ +.++|+++++|++|++++|+|++|+|++++++++|+++.+||+||+|++.+++.++|++++++
T Consensus 12 ~~e~~~i~~~L~~~---~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~ 88 (591)
T 2vgl_B 12 KGEIFELKAELNNE---KKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAV 88 (591)
T ss_dssp SSHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTH
T ss_pred CCHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 77099999987399---879999999999999987998688999999881799899999999999998665806899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99995327988567968987631379877698779999997723898756999999999999842898645676799999
Q 001845 110 NTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMA 189 (1006)
Q Consensus 110 Nsl~kDL~s~n~~~~~LAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~kl~~~~P~~i~~~~~~~~l~ 189 (1006)
|+++|||+|+|+.+|++||+++|+++++++.+.+.+.+.+++. |.+|||||+|++|+.++++.+|+.++.++|++.+.
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 166 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHH
T ss_conf 9999776999999999999998758907789999999999817--99858999999999999851924144635899999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCHHH---------HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 6506999338999999999998509122---------3100787888853311489984489999999835999999556
Q 001845 190 QLLDERDLGVLTSSMSLLVALVSNNHEA---------YWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNT 260 (1006)
Q Consensus 190 ~lL~D~d~~V~~~a~~ll~~i~~~~~~~---------~~~~i~~l~~~~ey~~~~~~~pWlqvkllrlL~~~~~~~d~~~ 260 (1006)
.+|+|+|++|+.+|+.++.+|++++++. +..++..+ ..++||+|++++++|..|++. +++.
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l---------~~~~~~~q~~il~~l~~l~~~-~~~~ 236 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL---------NECTEWGQIFILDCLSNYNPK-DDRE 236 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH---------HHCCHHHHHHHHHHHHTSCCC-SHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHCC---------CCCCCHHHHHHHHHHHHHCCC-CHHH
T ss_conf 996799843999999999999763787540442699999998748---------878825789999999986799-8599
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHH----HHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 8899999999982677666555578704799999999871389----488999----99999998540899853688999
Q 001845 261 RRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA----EKEMMS----QCIALLGKFIAVREPNIRYLGLE 332 (1006)
Q Consensus 261 ~~~l~~~l~~il~~t~~~~~~~~~n~~~aVl~eai~~i~~l~~----~~~l~~----~~~~~L~~fL~s~~~nirYl~L~ 332 (1006)
.+ +++..++. .+++.|. +|++||+++++++.. +.+.+. .+...|. +|.++++|+||++|+
T Consensus 237 ~~---~~l~~l~~------~l~~~~~--~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~ 304 (591)
T 2vgl_B 237 AQ---SICERVTP------RLSHANS--AVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALR 304 (591)
T ss_dssp HH---HHHHHHTT------CSCSSTT--HHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHH
T ss_pred HH---HHHHHHHH------HHCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHH
T ss_conf 99---99999999------8758984--999999999999740247887999999999999999-996699208999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99997735771789998587741226576754799899885311691429999999999752159575999999999998
Q 001845 333 NMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILA 412 (1006)
Q Consensus 333 ~l~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aLdlL~~l~n~~Nv~~Iv~eLl~yl~~~d~~~r~~lv~kI~~la 412 (1006)
++..++...|. .+..|... |.|+.++|.+||++|+++|+.++|++|++.|+.||+.|+.+.|.++|.+++.+|+.++
T Consensus 305 ~l~~i~~~~p~--~~~~~~~~-~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la 381 (591)
T 2vgl_B 305 NINLIVQKRPE--ILKQEIKV-FFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCA 381 (591)
T ss_dssp HHHHHHHHCCS--TTTTCTTT-TSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHH--HHHHHHHH-HEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999986969--89998875-5003699399999999999987786239999999999986579999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 63079836699999999985088616899999999884198848999999997405985156779988864200000002
Q 001845 413 EKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLA 492 (1006)
Q Consensus 413 eky~~~~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~~~~l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~ 492 (1006)
++|+++..||++++++++...|+++.+++|..+.+++.++|+.+++++..|++.+++...++. .++++|++||||+.+.
T Consensus 382 ~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~-~~~~~wilGey~~~~~ 460 (591)
T 2vgl_B 382 IKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDA-RAAMIWIVGEYAERID 460 (591)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHH-HHHHHHHHHTTCTTCT
T ss_pred HHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHCCCCCCC
T ss_conf 857467999999999998355168999999999999997920578999999988874237899-9999999970312136
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCC
Q ss_conf 799999478999998518998765899999999999732199995689999999987205-9995899999999997230
Q 001845 493 RRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKILMHTQPADPELQNQIWAIFNKYES-CIEVEIQQRAVEYFALSRK 571 (1006)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~s~~tr~~lLta~~Kl~~~~~~~~~e~~~~i~~vl~~~~~-s~d~EvqqRA~ey~~Ll~~ 571 (1006)
+ +.++++.+.++|..++..||+++|++++|++.++. ++..+.+..+|+.+.. +.|+||||||+||++|++.
T Consensus 461 ~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p---~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 461 N-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKP---SETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp T-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCC---STTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred C-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 7-----89999999986645988899999999999996196---579999999999865358996799999999999774
Q ss_pred --HHHHHHHHHCCCCCCCCCHH
Q ss_conf --48898863049999943026
Q 001845 572 --GAALMDILAEMPKFPERQSS 591 (1006)
Q Consensus 572 --~~~~~~vl~~mP~~~~~~~~ 591 (1006)
..+.+.|+++||+|+.+++.
T Consensus 533 ~~~~~~~~v~~~~p~~~~~~~~ 554 (591)
T 2vgl_B 533 DPVTAKEVVLSEKPLISEETDL 554 (591)
T ss_dssp CTTHHHHHHTSCCCCCCSCSSC
T ss_pred CHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9899999874899999978432
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=438.15 Aligned_cols=323 Identities=17% Similarity=0.278 Sum_probs=290.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 999999981128999989899999999999990899-----874478888840699967315667888720134835799
Q 001845 32 ELGNIRTRFKNEKGLSPYEKKKYVWKMLYIYMLGYD-----VDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLR 106 (1006)
Q Consensus 32 El~~IR~~f~~~~~l~~~~kkk~v~KLiyi~~lG~d-----v~fg~~~vi~Li~S~~~~~KrigYL~l~~l~~~~~el~~ 106 (1006)
.+++.| .|+++ +++..++++++.|++|++++|++ ++..|++++|+++|+|+++||+||||++.|++..+|+ +
T Consensus 27 v~qe~r-~fn~~-~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~-i 103 (355)
T 3tjz_B 27 VLQEAR-VFNET-PINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV-I 103 (355)
T ss_dssp HHHHGG-GTTSS-SCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG-G
T ss_pred HHHHHH-HHCCC-CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-H
T ss_conf 999999-96279-97689999999999999977998750588999999999826998999999999999937877899-9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999995327988567968987631379877698779999997723898756999999999999842898645676799
Q 001845 107 LAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWAD 186 (1006)
Q Consensus 107 L~iNsl~kDL~s~n~~~~~LAL~~l~~i~~~e~~~~l~~~V~~~l~s~~~~~~VRKkA~lal~kl~~~~P~~i~~~~~~~ 186 (1006)
|+||+|+||++++||++||+|||++|+|++++|++++.+.+++++. |.+|||||+|++|.+|+++.+||.+. +|.+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe~v~--~~~~ 179 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFDVVK--RWVN 179 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHHHHH--TTHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHCCCHHHHH--HHHH
T ss_conf 9999887436998476789999998657978999999999999858--99899999999999999336899999--9999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99965069993389999999999985091223100787888853311489984489999999835999999556889999
Q 001845 187 RMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCDVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPNTRRSLFE 266 (1006)
Q Consensus 187 ~l~~lL~D~d~~V~~~a~~ll~~i~~~~~~~~~~~i~~l~~~~ey~~~~~~~pWlqvkllrlL~~~~~~~d~~~~~~l~~ 266 (1006)
.+.++++|+|++|+.+|+.++++|+++++..+.++++.+ .-.++.+||+|+.++|++..|.+.++++..+.+.+
T Consensus 180 ~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l------~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~ 253 (355)
T 3tjz_B 180 EAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKF------TRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFD 253 (355)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HSSCCSCHHHHHHHHHHHTCC--------------
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH------HCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999996499810899999999999862668899999997------66787582899999999998664463656899999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9999982677666555578704799999999871389-488999999999985408998536889999999773577178
Q 001845 267 VLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDA-EKEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHD 345 (1006)
Q Consensus 267 ~l~~il~~t~~~~~~~~~n~~~aVl~eai~~i~~l~~-~~~l~~~~~~~L~~fL~s~~~nirYl~L~~l~~l~~~~~~~~ 345 (1006)
++..++. | .+++|+|||+++++.+.. +...+..+++.|+.|++++++|+||++|+++.+++...| +
T Consensus 254 ~l~~~L~---------~--~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P--~ 320 (355)
T 3tjz_B 254 FIESCLR---------N--KHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP--S 320 (355)
T ss_dssp ---CCCC---------C--SSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC-----------
T ss_pred HHHHHHC---------C--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC--H
T ss_conf 9999982---------8--9819999999999936588899999999999999769991489999999999998794--9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99985877412265767547998998853116914
Q 001845 346 IIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVS 380 (1006)
Q Consensus 346 ~v~~~~~~i~~~L~d~D~sIr~~aLdlL~~l~n~~ 380 (1006)
.+++|+.+|..|+.|+|.||+..|+..|.+.++|.
T Consensus 321 ~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 321 AVTACNLDLENLVTDANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999998706986769999999863136899
No 5
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=1.00 E-value=1 Score=427.07 Aligned_cols=235 Identities=27% Similarity=0.531 Sum_probs=224.8
Q ss_pred CHHHHHHHHHCCCCEEEECCCCEEEEEEEEEECCEEEEEEEEEECCCCCCCEEEEEEECCC----CEEEEEECCCCCCCC
Q ss_conf 5478887431168503640787179999957366169999996158987210699980897----506876059964489
Q 001845 730 NIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPS----HLKMELSLVPETIPP 805 (1006)
Q Consensus 730 ~~~~~~~~ll~~~~Gvlyed~~iqI~~k~~~~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~----~l~~~~~~~~~tI~~ 805 (1006)
+|++||+|||++++||||||++||||+|++|+++++++.+||+||++++|++|++++.+++ ++.++..+++++|.|
T Consensus 35 ~~~~~f~rll~~~~GVLyED~~IQIg~kse~~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p 114 (273)
T 3hs8_A 35 EFEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDG 114 (273)
T ss_dssp -CEECGGGGSSCSCEEEEECSSEEEEEEEEEETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCT
T ss_pred HHHHHHHHHEECCCCEEEECCCEEEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCEECC
T ss_conf 18888876527377289868858999999980766999999986899740558999977877885459982489973799
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 99158899999669887773899999658903788741670000125555589021788711037999612676147898
Q 001845 806 RAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRP 885 (1006)
Q Consensus 806 ~~q~q~~i~v~~~~~~~~~P~l~isf~~~g~~~~~~LklPi~~~kf~~p~~l~~~~F~~rWk~i~~~~~E~~~~~~~~~~ 885 (1006)
++|+||.+.++|++||.++|+++++|.|+|+.+++.|+|||.++|||+|++|+.++||+||++++++++|+|++|...++
T Consensus 115 ~~q~qq~i~v~~~~pF~~~P~l~isf~~~g~~~~~~LkLPi~~~kf~~p~~~~~~~F~~rWkql~~~~~E~q~v~~~~~~ 194 (273)
T 3hs8_A 115 GAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHP 194 (273)
T ss_dssp TCEEEEEEEEEECSCCCCCCEEEEEEEETTEEEEEEEECCCCGGGGEEECCCCHHHHHHHHHHCCSGGGEEEEEEECSSC
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCEEHHHEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 97899999999844446797899999989957899996453522412456589899999997267778638999617777
Q ss_pred CCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 89899998871143177217889988589999986158871268999964746685289999839975479999999998
Q 001845 886 MPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQ 965 (1006)
Q Consensus 886 ~~~~~i~~~l~~~g~~v~~~~d~~~~n~~~aGi~~~~~~g~vg~Lvrie~~~~~~~~~ritvRs~~~~vs~~i~~~i~~~ 965 (1006)
++.+++++++.++||++|+++|||++|+++||+|||++ |++|||+|+|++.+++ ++||||||+++++|++|+++|+++
T Consensus 195 ~~~~~v~~~l~~lg~~vl~g~Dpn~~n~v~AGi~~t~~-g~~gcLvRle~n~~~~-~~rlTVRSt~~~vs~~i~~~i~~~ 272 (273)
T 3hs8_A 195 MDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKT-TQIGCLLRLEPNLQAQ-MYRLTLRTSKDTVSQRLCELLSEQ 272 (273)
T ss_dssp CCHHHHHHHHHHHTCEECTTSSSSTTSEEEEEEEECSS-CEEEEEEEEEEETTTT-EEEEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEEEECC-CCEEEEEEEEECCCCC-EEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 77999999997478399178899835299999999678-8788999997866587-899999979835999999999854
Q ss_pred H
Q ss_conf 4
Q 001845 966 L 966 (1006)
Q Consensus 966 l 966 (1006)
+
T Consensus 273 ~ 273 (273)
T 3hs8_A 273 F 273 (273)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 6
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=1.00 E-value=1 Score=422.57 Aligned_cols=238 Identities=27% Similarity=0.533 Sum_probs=226.1
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCEEEEEEEEEECCEEEEEEEEEECCCCCCCEEEEEEECCC----CEEEEEECCCCC
Q ss_conf 8775478887431168503640787179999957366169999996158987210699980897----506876059964
Q 001845 727 PIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPS----HLKMELSLVPET 802 (1006)
Q Consensus 727 ~~~~~~~~~~~ll~~~~Gvlyed~~iqI~~k~~~~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~----~l~~~~~~~~~t 802 (1006)
++++|++||+|||++++||||||++||||+|++|+++++++.+||+||++++|++|++++.+++ .+.++..+++++
T Consensus 6 ~~~~~~~~f~rl~~~~~GVLyEd~~iQIg~kse~~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~ 85 (247)
T 1kyf_A 6 RLGSSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPT 85 (247)
T ss_dssp CSSSSCTTGGGGSSCCCEEEEECSSEEEEEEEEEETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSC
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCEEEEEEEEEECCEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCE
T ss_conf 35768998998772076699988979999999995772999999982788713449999856744577706862789965
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 48999158899999669887773899999658903788741670000125555589021788711037999612676147
Q 001845 803 IPPRAQVQCPLEVMNLRPSRDVAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVRG 882 (1006)
Q Consensus 803 I~~~~q~q~~i~v~~~~~~~~~P~l~isf~~~g~~~~~~LklPi~~~kf~~p~~l~~~~F~~rWk~i~~~~~E~~~~~~~ 882 (1006)
|.|++|+||.+.++|+++|.++|+++++|+++|+.+++.|+|||.++|||+|.+|+.++||+||++++++++|+|++|+.
T Consensus 86 I~~~~q~qq~i~v~~~~~f~~~P~l~isf~~~g~~~~~~LkLPi~l~KF~~p~~~~~~~Ff~rW~~l~~~~~E~q~~f~~ 165 (247)
T 1kyf_A 86 VDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKA 165 (247)
T ss_dssp BCTTCEEEEEEEEEECSCCCCCCEEEEEEEETTEEEEEEEECCCCGGGGEEECCCCHHHHHHHHTTCCSGGGEEEEEEEC
T ss_pred ECCCCEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 68886899999999853657798899999989922689990572788860477599899999998615887504898526
Q ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf 89889899998871143177217889988589999986158871268999964746685289999839975479999999
Q 001845 883 VRPMPLLEMANLFNSCHLIVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFI 962 (1006)
Q Consensus 883 ~~~~~~~~i~~~l~~~g~~v~~~~d~~~~n~~~aGi~~~~~~g~vg~Lvrie~~~~~~~~~ritvRs~~~~vs~~i~~~i 962 (1006)
..+++.+.+.+++.||||.+++++||||+|+|+||++|+++ +++|||+|+|++.+++ +|||||||+++.+|+.++++|
T Consensus 166 ~~~~~~~~~~~~l~gf~~~vl~~vDpn~~niv~agi~~t~~-~~~gcLlRlE~n~~~~-~~rltvRss~~~vs~~l~~ll 243 (247)
T 1kyf_A 166 KHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKT-TQIGCLLRLEPNLQAQ-MYRLTLRTSKDTVSQRLCELL 243 (247)
T ss_dssp SSCCCHHHHHHHHHHHTSEEECSSSSSTTSEEEEEEEECSS-CEEEEEEEEEEETTTT-EEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCC-CCEEEEEEEEECCCCC-EEEEEEEECCHHHHHHHHHHH
T ss_conf 78769899999984387699607889968499999998688-7587999999867687-899999979837999999999
Q ss_pred HHHH
Q ss_conf 9984
Q 001845 963 KEQL 966 (1006)
Q Consensus 963 ~~~l 966 (1006)
+++|
T Consensus 244 ~~~~ 247 (247)
T 1kyf_A 244 SEQF 247 (247)
T ss_dssp HTTC
T ss_pred HHHC
T ss_conf 9659
No 7
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=1.00 E-value=1 Score=150.60 Aligned_cols=227 Identities=15% Similarity=0.121 Sum_probs=174.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCEEEEEEEEEECCEEEEEEEEEECC
Q ss_conf 4332357767653-221124875444677678775478887431168503640787179999957366169999996158
Q 001845 697 EQNVVSGLEGVAA-VDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKN 775 (1006)
Q Consensus 697 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~Gvlyed~~iqI~~k~~~~~~~~~i~l~~~Nks 775 (1006)
|++..+|+..+++ .+ ..||+ . |.+|..-++||.|.+| ..++|.+.|+-
T Consensus 69 pef~~lG~l~kSS~~~-----------v~LTE---~----------------EtEYvV~~vKHiF~~h-iVlQF~~~NTL 117 (322)
T 1pzd_A 69 PEFQGLGPLFKSSPEP-----------VALTE---S----------------ETEYVIRCTKHTFTDH-MVFQFDCTNTL 117 (322)
T ss_dssp GGGTTCCCCCEECSSC-----------EECSC---T----------------TSSEEEEEEEEECSSE-EEEEEEEEECC
T ss_pred HHHHHCCCCCCCCCCC-----------CCCCC---C----------------CCEEEEEEEEEECCCC-EEEEEEEEECC
T ss_conf 5577729630057886-----------22447---7----------------7606899999962672-89999978736
Q ss_pred CCC-CCEEEEEEECCCCEEEEEECCC-CCCCCCCEEEEEEEEEECCCCCCCC----EEEEEEEE------------CCCE
Q ss_conf 987-2106999808975068760599-6448999158899999669887773----89999965------------8903
Q 001845 776 TSP-LFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMNLRPSRDVA----VLDFSYKF------------NTNM 837 (1006)
Q Consensus 776 ~~~-lt~f~~~~~~p~~l~~~~~~~~-~tI~~~~q~q~~i~v~~~~~~~~~P----~l~isf~~------------~g~~ 837 (1006)
+.+ |+|+++++...+.+... ..+| +.|++++....++.+.........+ ...+.|.+ .|..
T Consensus 118 ~dq~LenV~V~~~~~~~~~~~-~~ip~~~L~~~~~g~~yv~~~~~~~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGye 196 (322)
T 1pzd_A 118 NDQTLENVTVQMEPSEAYEVL-CYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYE 196 (322)
T ss_dssp TTEEEEEEEEEEEESSSCEEE-EEECEEEECBTCCEEEEEEEECCSSCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEE
T ss_pred CCEEEEEEEEEEECCCCCEEE-EEEEHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 845871089999517770589-8879767799998359999985687777413078999999999616999985888864
Q ss_pred EEEEEC-CCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCHHHHHHHHHCCCEEEECCCCCCCC----
Q ss_conf 788741-67000012555558902178871103799961267614-789889899998871143177217889988----
Q 001845 838 VNVKLR-LPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVR-GVRPMPLLEMANLFNSCHLIVCPGLDPNPN---- 911 (1006)
Q Consensus 838 ~~~~Lk-lPi~~~kf~~p~~l~~~~F~~rWk~i~~~~~E~~~~~~-~~~~~~~~~i~~~l~~~g~~v~~~~d~~~~---- 911 (1006)
.+|.|+ +.+.+.+||.|+. ..+|...|.+++. +.|....|. .......+++.+++.-+||++|+|+|..++
T Consensus 197 DEY~lEdlel~~~D~i~p~~--~~nF~~~We~l~~-~~E~~~tf~L~~~~sL~~AV~~l~~~Lgm~p~e~sd~v~~~~~s 273 (322)
T 1pzd_A 197 DEYVLEDLEVTIADHIQKVM--KLNFEAAWDEVGD-EFQKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNT 273 (322)
T ss_dssp EEEECCCEEECGGGGEEECC--CSCHHHHHHHHCS-TTCEEEEEEESSCCCHHHHHHHHHHHHTCEECTTTTCCCSSCSE
T ss_pred CEEECCCEEECHHHEEEECC--CCCHHHHHHHCCC-CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 30772566633312761435--6746899985677-66237999816768699999999996398150587757888762
Q ss_pred -CEEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf -589999986158871268999964746685289999839975479999999
Q 001845 912 -NLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFI 962 (1006)
Q Consensus 912 -n~~~aGi~~~~~~g~vg~Lvrie~~~~~~~~~ritvRs~~~~vs~~i~~~i 962 (1006)
++.++|+|. |+..+|+|+++--..++.++|+|||+++++++.|.+++
T Consensus 274 HtL~LsG~~~----gg~~VLvr~rl~~~~gv~~kl~vRS~~~~v~~~v~~~v 321 (322)
T 1pzd_A 274 HTLLLAGVFR----GGHDILVRSRLLLLDTVTMQVTARSSEELPVDIVLASV 321 (322)
T ss_dssp EEEEEEEEET----TSCEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHHC
T ss_pred EEEEEEEEEE----CCCEEEEEEEEEECCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf 6999989993----89479999998507966999999649777999999964
No 8
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=1.00 E-value=1 Score=148.38 Aligned_cols=228 Identities=16% Similarity=0.143 Sum_probs=173.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCEEEEEEEEEECCEEEEEEEEEECCC
Q ss_conf 43323577676532211248754446776787754788874311685036407871799999573661699999961589
Q 001845 697 EQNVVSGLEGVAAVDAAAIVPVTVQTNAVEPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNT 776 (1006)
Q Consensus 697 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~Gvlyed~~iqI~~k~~~~~~~~~i~l~~~Nks~ 776 (1006)
|++..+|+..+|+|. | ..||+ . |.+|..-++||.|.+| ..++|.+.|+-+
T Consensus 22 pef~~lG~l~kSS~~-----p-----v~LTE---~----------------EtEYvV~~vKHiF~~h-iVlQF~i~NTL~ 71 (275)
T 1r4x_A 22 PEFRGLGPLFKSSPE-----P-----VALTE---S----------------ETEYVIRCTKHTFTNH-MVFQFDCTNTLN 71 (275)
T ss_dssp GGGTTSCSCCEECSS-----C-----EECSC---T----------------TSSEEEEEEEEECSSE-EEEEEEEEECCT
T ss_pred HHHHHCCCCCCCCCC-----C-----CCCCC---C----------------CCCEEEEEEEEECCCC-EEEEEEEEECCC
T ss_conf 457771964015788-----6-----22457---7----------------7716999999964783-899999687468
Q ss_pred CC-CCEEEEEEECCCCEEEEEECCC-CCCCCCCEEEEEEEEEECCCCCCCC----EEEEEEEE------------CCCEE
Q ss_conf 87-2106999808975068760599-6448999158899999669887773----89999965------------89037
Q 001845 777 SP-LFSVQALILPPSHLKMELSLVP-ETIPPRAQVQCPLEVMNLRPSRDVA----VLDFSYKF------------NTNMV 838 (1006)
Q Consensus 777 ~~-lt~f~~~~~~p~~l~~~~~~~~-~tI~~~~q~q~~i~v~~~~~~~~~P----~l~isf~~------------~g~~~ 838 (1006)
.+ |+|+++++...++... ...+| +.|++++....++.+.........+ ...+.|.+ .|...
T Consensus 72 dq~LenVsV~~~~~d~~~~-~~~ipi~~L~~~~~g~~yV~l~~~~~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeD 150 (275)
T 1r4x_A 72 DQTLENVTVQMEPTEAYEV-LXYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYED 150 (275)
T ss_dssp TEEEEEEEEEEEESSSCEE-EEEECEEEECTTCCEEEEEEEECCSSSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEE
T ss_pred CEEEEEEEEEEECCCCCEE-EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 5797218999971877528-875450005889984289999737776665322057899999996169999848888642
Q ss_pred EEEEC-CCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCHHHHHHHHHCCCEEEECCCCCCCCC----
Q ss_conf 88741-67000012555558902178871103799961267614-7898898999988711431772178899885----
Q 001845 839 NVKLR-LPAVLNKFLQPITVSAEEFFPQWRSLSGPPLKLQEVVR-GVRPMPLLEMANLFNSCHLIVCPGLDPNPNN---- 912 (1006)
Q Consensus 839 ~~~Lk-lPi~~~kf~~p~~l~~~~F~~rWk~i~~~~~E~~~~~~-~~~~~~~~~i~~~l~~~g~~v~~~~d~~~~n---- 912 (1006)
+|.|+ +.+.+.+||.|.. ..+|...|.+++. +.|....|. .......+++.+++.-+||.+|+|+|..+++
T Consensus 151 EY~lEdlel~~~D~i~p~~--~~nF~~~We~l~~-~~E~~~tf~L~~~~sl~~AV~~l~~~Lgm~p~e~sd~v~~~~~~H 227 (275)
T 1r4x_A 151 EYVLEDLEVTVADHIQKVM--KLNFEAAWDEVGD-EFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTH 227 (275)
T ss_dssp EEECCCEEECGGGGEEECC--CSCHHHHHHHHCS-TTCEEEEEEETTCCCHHHHHHHHHHHHTCEECTTTTSCCSSCSEE
T ss_pred EEECCCEEECHHHEEEECC--CCCHHHHHHHCCC-CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
T ss_conf 0882566624212871435--5746899985677-662379998157686999999999963981515876578887626
Q ss_pred -EEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHH
Q ss_conf -89999986158871268999964746685289999839975479999999
Q 001845 913 -LVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFI 962 (1006)
Q Consensus 913 -~~~aGi~~~~~~g~vg~Lvrie~~~~~~~~~ritvRs~~~~vs~~i~~~i 962 (1006)
+.++|.|. |+..+|+|++.....++.++++|||+++++++.|.+++
T Consensus 228 tL~LsG~~~----gg~~Vlvr~rl~~~~gv~~kl~vRs~~~~v~~~v~~~v 274 (275)
T 1r4x_A 228 TLLLAGVFR----GGHDILVRSRLLLLDTVTMQVTARSLEELPVDIILASV 274 (275)
T ss_dssp EEEEEEEET----TTEEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHHC
T ss_pred EEEEEEEEE----CCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf 999989992----89479999998408966999999749777999999965
No 9
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=1.00 E-value=1 Score=138.69 Aligned_cols=217 Identities=11% Similarity=0.139 Sum_probs=172.6
Q ss_pred HCCCCEEEECCCCEEEEEEEEEECCEEEEEEEEEECCCCCCCEEEEEEECCC-CEEEEEE-CCCCCCCCCCEEEEEEEEE
Q ss_conf 1168503640787179999957366169999996158987210699980897-5068760-5996448999158899999
Q 001845 739 CLKDSGVLYEDPYVQIGIKAEWRGHHGRLVLFLGNKNTSPLFSVQALILPPS-HLKMELS-LVPETIPPRAQVQCPLEVM 816 (1006)
Q Consensus 739 l~~~~Gvlyed~~iqI~~k~~~~~~~~~i~l~~~Nks~~~lt~f~~~~~~p~-~l~~~~~-~~~~tI~~~~q~q~~i~v~ 816 (1006)
+..++| .+|+|.+...+++++..+.+.+.|++..+|++|.+|+..+. ++..... ..+..|+||+.....+.+.
T Consensus 36 l~~~~g-----~GLeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 36 LPAVKA-----KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp ECGGGT-----TTEEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCCCCC-----CCEEEEEEEEEECCEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 465578-----968999999970998999999862774530015899736654755174124887538998479998661
Q ss_pred ECCCCCC-CCEEEEEEEECCCEEEEEECCCCEEECCCCCC-CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 6698877-73899999658903788741670000125555-589021788711037999612676147898898999988
Q 001845 817 NLRPSRD-VAVLDFSYKFNTNMVNVKLRLPAVLNKFLQPI-TVSAEEFFPQWRSLSGPPLKLQEVVRGVRPMPLLEMANL 894 (1006)
Q Consensus 817 ~~~~~~~-~P~l~isf~~~g~~~~~~LklPi~~~kf~~p~-~l~~~~F~~rWk~i~~~~~E~~~~~~~~~~~~~~~i~~~ 894 (1006)
+.++... .|.-.++..+..+...+++..++.+..++.|. .|+.++|.+.|+.+++ .+|.+..++.. ..+.+++.+.
T Consensus 111 ~~~~~~~~~p~~~LQVAIKtn~~vfYF~~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~-~nE~~~~i~~~-~~~~~~i~~k 188 (258)
T 2g30_A 111 TLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPN-ENELQFQIKEC-HLNADTVSSK 188 (258)
T ss_dssp SCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGGGBCSCCCCCHHHHHHHHHHSCG-GGCEEEEETTC-CCCHHHHHHH
T ss_pred CCCCCCCCCCCCHHEEEEECCCCEEEEEEECCHHHHCCCCCCCCHHHHHHHHHHCCC-CCCEEEECCCC-CCCHHHHHHH
T ss_conf 488556788773110333158964999710588993377676699999999864888-66136854667-6798999999
Q ss_pred HHCCCE-EEECCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 711431-7721788998858999998615887126899996474668528999983997547999999999840
Q 001845 895 FNSCHL-IVCPGLDPNPNNLVASTTFYSESTRAMLCLTRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLV 967 (1006)
Q Consensus 895 l~~~g~-~v~~~~d~~~~n~~~aGi~~~~~~g~vg~Lvrie~~~~~~~~~ritvRs~~~~vs~~i~~~i~~~l~ 967 (1006)
|...++ .|.+..+.+++.++.++.+ .+++.+|+++.....++ .+++++||.++.++..+.+.++..|.
T Consensus 189 L~~~nif~Va~r~~~~q~~ly~S~kt----~n~i~vL~el~~~~~~~-~v~l~vks~~~~i~~li~~~~~~~l~ 257 (258)
T 2g30_A 189 LQNNNVYTIAKRNVEGQDMLYQSLKL----TNGIWILAELRIQPGNP-NYTLSLKCRAPEVSQYIYQVYDSILK 257 (258)
T ss_dssp HHHTTCEEEEEEEETTEEEEEEEEEB----TTSCEEEEEEEECSSCS-SEEEEEEESSGGGHHHHHHHHHHHHH
T ss_pred HHHCCEEEEEEECCCCCCEEEEEEEC----CCCCEEEEEEEECCCCC-CEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 98778499971017887069999992----59958999999806998-27999966982078999999999962
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=123.01 Aligned_cols=474 Identities=12% Similarity=0.066 Sum_probs=252.6
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC---HHHHHHHHHHH
Q ss_conf 8888840699967315667888720134835--799999999953279885679689876313798---77698779999
Q 001845 73 MEAVSLISAPKYPEKQVGYIVTSCLLNENHD--FLRLAINTVRNDIIGRNETFQCLALTMVGNIGG---REFAESLAPDV 147 (1006)
Q Consensus 73 ~~vi~Li~S~~~~~KrigYL~l~~l~~~~~e--l~~L~iNsl~kDL~s~n~~~~~LAL~~l~~i~~---~e~~~~l~~~V 147 (1006)
.....++.+++...+..+--++..+....++ +.-.+...+.+=..++++..|..|...++.+.. ..+.+.+.+.+
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l 169 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYF 169 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999874760799999999999999979999999999999999850777179999999999999856999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHH-HH-HCCCCCC
Q ss_conf 997723898756999999999999842898645676799999650699933899999999999850912-23-1007878
Q 001845 148 QKLIISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHE-AY-WSCLPKC 225 (1006)
Q Consensus 148 ~~~l~s~~~~~~VRKkA~lal~kl~~~~P~~i~~~~~~~~l~~lL~D~d~~V~~~a~~ll~~i~~~~~~-~~-~~~i~~l 225 (1006)
.+++. |.++.||+.|+-++.++.+..+.....+.+.+.+..++.|.+..|...|+..+..++...+. .+ ..++|.+
T Consensus 170 ~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 247 (588)
T 1b3u_A 170 RNLCS--DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247 (588)
T ss_dssp HHHHT--CSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHH
T ss_pred HHHHC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99848--9978899999998999999816776799999999988249928899989999999998579888887899999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH---HHHH-
Q ss_conf 8885331148998448999999983599999955-6889999999998267766655557870479999999---9871-
Q 001845 226 DVPQEYTYYGIPSPWLQVKTMRALQYFPTVEDPN-TRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALA---LVMH- 300 (1006)
Q Consensus 226 ~~~~ey~~~~~~~pWlqvkllrlL~~~~~~~d~~-~~~~l~~~l~~il~~t~~~~~~~~~n~~~aVl~eai~---~i~~- 300 (1006)
......+++.......+.|..+...-+++ ....+.+.+...+... ...|--.+.. .+..
T Consensus 248 -----~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-----------~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 248 -----RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC-----------EAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp -----HHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS-----------SHHHHHHHHHHHHHHHHT
T ss_pred -----HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHHHHH
T ss_conf -----9980699778999999999999998195210558999999985899-----------589999999879999997
Q ss_pred CCCC---HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3894---8899999999998540899853688999999977357717899985877412265767547998998853116
Q 001845 301 LDAE---KEMMSQCIALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMC 377 (1006)
Q Consensus 301 l~~~---~~l~~~~~~~L~~fL~s~~~nirYl~L~~l~~l~~~~~~~~~v~~~~~~i~~~L~d~D~sIr~~aLdlL~~l~ 377 (1006)
+... .......+..+..++.+.++.+|..+...+..++..-+.......-...++.+++|++..+|..++.-|..++
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 27444365799999999999861998899999999999998886276788889999999837983689999999899999
Q ss_pred CCCC----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 9142----9999999999752159575999999999998630798--366999999999850886168999999998841
Q 001845 378 DVSN----AKDIVEELLQYLSTADFAMREELSLKAAILAEKFAPD--LSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTN 451 (1006)
Q Consensus 378 n~~N----v~~Iv~eLl~yl~~~d~~~r~~lv~kI~~laeky~~~--~~w~vd~ll~ll~~~g~~v~~ei~~~i~~ii~~ 451 (1006)
..-. ...++..|...+.+.+..+|..++..++.++..+.++ ....+..+++++......|.......+..+...
T Consensus 392 ~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 392 EVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 75498989888899999983599813999999999999988098989999999999882598199999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 988--489999999974059851567799888642000000027999994789999985189987658999999999997
Q 001845 452 NED--LQPYAAAKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSIIHEKLPTVSMSTVAILLSTYAKIL 529 (1006)
Q Consensus 452 ~~~--l~~~a~~~l~~~L~~~~~~e~l~k~~~wilGEyg~~i~~~~~~~~~~~~~~l~~~~~~~s~~tr~~lLta~~Kl~ 529 (1006)
... .....+..+...+.++.. ..-..++|.+|+.+..+.... -...++..+...+....+.+|..++.++.++.
T Consensus 472 ~~~~~~~~~llp~l~~~~~~~~~--~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 472 FGKEWAHATIIPKVLAMSGDPNY--LHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HCHHHHHHHTHHHHHHTTTCSCH--HHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HCCHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 68445788899999998318987--999999999999997669899--99999999986678998627999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 32199995689999999987205999589999999999723
Q 001845 530 MHTQPADPELQNQIWAIFNKYESCIEVEIQQRAVEYFALSR 570 (1006)
Q Consensus 530 ~~~~~~~~e~~~~i~~vl~~~~~s~d~EvqqRA~ey~~Ll~ 570 (1006)
..+. .....+.+...+.....+.|.+||+.|++-+.-++
T Consensus 548 ~~~~--~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 548 PILD--NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp GGSC--HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9865--36459999999998747996669999999999763
Done!