BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001846
(1006 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|190148353|gb|ACE63259.1| cytokinin receptor 1 [Betula pendula]
Length = 1004
Score = 1597 bits (4136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1005 (77%), Positives = 870/1005 (86%), Gaps = 4/1005 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MGLK +++H HSVA+++NEQMGTK G TFIQ+NR WLPK L+LWI+ MAF+S IY MD
Sbjct: 1 MGLKMQQSHHHSVAVRLNEQMGTKRGCTFIQANRDWLPKFLLLWILVMAFLSTMIYNSMD 60
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
++NK+RRKE+LGSMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAEY
Sbjct: 61 DDNKVRRKEILGSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEY 120
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RVV+++RE FERQHG I TM+ EPSP+RD YAPV+F QE +
Sbjct: 121 TARTAFERPLLSGVAYAQRVVNSERESFERQHGWIIKTMEREPSPVRDVYAPVIFTQESV 180
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILRA ATGKAVLT PFRLLGSHHLGVVLTFPVYKSKL +
Sbjct: 181 SYIESLDMMSGEEDRENILRATATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSSSPAM 240
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
+E I+ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SDPLIMYG Q QD D+
Sbjct: 241 QELIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLIMYGHQYQDSDL 300
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL HES+LDFGD FR+H+MICRYHQKA WTALTTAF FVIGLLVGYILYGA IHIVK
Sbjct: 301 SLFHESKLDFGDPFRRHQMICRYHQKAPMSWTALTTAFLFFVIGLLVGYILYGAGIHIVK 360
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+M+ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT+LSSTQRDYA
Sbjct: 361 VEDDFHEMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYA 420
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQICGKALIALINEVLDRAKI+A KLELEAV F LR+ILDDVLSLFSEKSR+KGIELA
Sbjct: 421 QTAQICGKALIALINEVLDRAKIDAGKLELEAVPFVLRSILDDVLSLFSEKSRHKGIELA 480
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVPE V+GDPGRFRQI+TNLVGNSVKFTERGHIFVKVHLAE TM +AK ET L
Sbjct: 481 VFVSDKVPEIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEHTMAMVNAKAETCL 540
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NGG++ + SG +F TLSG E AD RNSWD FKHL+ E +S AS NMM +N SE
Sbjct: 541 NGGSDRSLFLSGGREFKTLSGCEVADERNSWDIFKHLVADEELRSEAS-RNMMNTNEASE 599
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMVCVEDTGIGIPL AQ+RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM GQI+
Sbjct: 600 HVTLMVCVEDTGIGIPLCAQDRVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMGGQIN 659
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+SRPQVGSTFSFTAVFG+CK+ F D+K+ SEDLP GF+GLKA+VVDEKPVRAAVT+Y
Sbjct: 660 FISRPQVGSTFSFTAVFGRCKKNAFSDVKKPISEDLPSGFRGLKALVVDEKPVRAAVTRY 719
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI+V+++SS K A + T K G + + KFQPD++LVEKD W+S E+ G N LLD
Sbjct: 720 HLKRLGILVEVASSFKIAVAMTGKKG-SLTLRKFQPDLVLVEKDSWMSAEEGGLNGWLLD 778
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
WK NGH+F+LPK+ILLATNI K E DKAKA GFADTVIMKPLRASM+AACLQQVL K
Sbjct: 779 WKQNGHIFQLPKMILLATNIDKAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGIGKK 838
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
RQ + + NGSSF Q LL GKKILVVDDN VNR VA GALKKFGA VECA S KAAL L
Sbjct: 839 RQQEKDMLNGSSFLQSLLCGKKILVVDDNRVNRRVAEGALKKFGADVECAESGKAALALL 898
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q PH FDACFMDIQMPEMDGFEATR+IR MESK NEQ +NGG++ +G ++ E H+PILA
Sbjct: 899 QLPHNFDACFMDIQMPEMDGFEATRQIRVMESKENEQ-INGGATDEGAIRKREWHVPILA 957
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
MTADVIHAT+DECLKCGMDGYVSKPFEEENLY+ +AKFFKS P+S
Sbjct: 958 MTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSNPIS 1002
>gi|359473065|ref|XP_002285117.2| PREDICTED: histidine kinase 4-like [Vitis vinifera]
Length = 1003
Score = 1594 bits (4127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1005 (77%), Positives = 866/1005 (86%), Gaps = 5/1005 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MGLK + +H SVA+++NEQMGTK GYTFIQ+NRAWLPK LV WIM MA S +Y MD
Sbjct: 1 MGLKMQSHH--SVAVRLNEQMGTKRGYTFIQANRAWLPKFLVFWIMLMAVFSNFVYNKMD 58
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
NK RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAEY
Sbjct: 59 AANKERREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEY 118
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RV ++RE+FE+QHG TI TMK E SPIRDEYAPV+F QE +
Sbjct: 119 TARTAFERPLLSGVAYAQRVAYSERERFEKQHGWTIKTMKREASPIRDEYAPVIFSQETV 178
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP TV
Sbjct: 179 SYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTV 238
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
E+RI+ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SDPL+MYG Q QD DM
Sbjct: 239 EQRIEATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDM 298
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SLLHES+LDFGD FRKH+MICRYHQK T WT+LTTAF FVIGLLVGYILYGAAIHIVK
Sbjct: 299 SLLHESKLDFGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVK 358
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA
Sbjct: 359 VEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 418
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALI LINEVLDRAKIEA KLELEAV FNLR+ILDDVLSLFSEKSR+KG+ELA
Sbjct: 419 QTAQACGKALITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELA 478
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGHIFV+VHLAE T DAK ET L
Sbjct: 479 VFVSDKVPEMVIGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETCL 538
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NGG++EG+ +G QF TLSG EAAD +NSWD+FKHLI E +S+AS I M ++ SE
Sbjct: 539 NGGSDEGLVSNGGSQFRTLSGCEAADDQNSWDRFKHLIFDEDLRSDASNI-MTVTSEASE 597
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMV VEDTGIGIPL AQ RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM GQI
Sbjct: 598 KVTLMVSVEDTGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIK 657
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+SRPQ+GSTFSFTA FG+CK+ D+K+S S+DLP GF+GLKA+VVD +PVRA VT+Y
Sbjct: 658 FISRPQIGSTFSFTADFGRCKKNALSDLKKSNSDDLPIGFRGLKAIVVDGRPVRAIVTKY 717
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI+V++++SIK A + T KNG +S QPD+ILVEKD WIS ED+ N +LLD
Sbjct: 718 HLKRLGILVEVANSIKKAVAITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLD 777
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
WK N H KLPK+ILLATNIS E DKAKA GFADTVIMKPLRASM+AACLQQVL K
Sbjct: 778 WKQNRHTLKLPKMILLATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKK 837
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
RQ G+ + NGS+F Q LL GKKILVVDDN VNR VAAGALKKFGA VECA S KAAL L
Sbjct: 838 RQQGKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLL 897
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q PH FDACFMDIQMPEMDGFEATRRIR +ESKANEQ MNGG + +G A + E H+PILA
Sbjct: 898 QLPHNFDACFMDIQMPEMDGFEATRRIRLIESKANEQ-MNGGCTPEGAATKGEWHVPILA 956
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
MTADVIHAT+D+CLKCGMDGYVSKPFEEENLY+ +AKFFKSKP+S
Sbjct: 957 MTADVIHATYDKCLKCGMDGYVSKPFEEENLYQAVAKFFKSKPIS 1001
>gi|224108221|ref|XP_002314765.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148365|gb|ACE63265.1| cytokinin receptor 1B [Populus trichocarpa]
gi|222863805|gb|EEF00936.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1006
Score = 1587 bits (4108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1004 (77%), Positives = 865/1004 (86%), Gaps = 6/1004 (0%)
Query: 1 MGLKTRKNHCHSVALKVN-EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGM 59
M L ++++ HSVA+K+N +QMGTK GYTFIQ+NR WLPK L+LW+M MA S++IY GM
Sbjct: 1 MALNIQQSYHHSVAVKMNGQQMGTKRGYTFIQANRTWLPKILLLWVMAMALFSLTIYNGM 60
Query: 60 DEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAE 119
D +N++RRKEVL SMCDQRARMLQDQFNV+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAE
Sbjct: 61 DADNRVRRKEVLSSMCDQRARMLQDQFNVSVNHVHALAILVSTFHYYKNPSAIDQETFAE 120
Query: 120 YTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEP 179
YT RTAFERPLLSGVAYA RVV+++R +FERQHG TI TM+ EPSPIRDEYAPV+F QE
Sbjct: 121 YTARTAFERPLLSGVAYAQRVVNSERLEFERQHGWTIKTMEREPSPIRDEYAPVIFSQET 180
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+S+++SLDMMSGEEDRENILRARA+GKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP T
Sbjct: 181 VSYIESLDMMSGEEDRENILRARASGKAVLTGPFRLLGSHHLGVVLTFPVYKSKLPPSPT 240
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
V +RI+ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SD LIMYG QNQDGD
Sbjct: 241 VAQRIEATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNQDGD 300
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
MSLLHES+LDFGD FR+H M CRYH+KA T WTALTT F FVIGLLVGYILY AAIHIV
Sbjct: 301 MSLLHESKLDFGDPFRRHLMTCRYHEKAPTSWTALTTTFLFFVIGLLVGYILYEAAIHIV 360
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDDFH+MQ+LKV+AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY
Sbjct: 361 KVEDDFHEMQDLKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 420
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
AQTAQ+CGKALIALINEVLDRAKIEA KLELEAV F++R+I+DDVLSLFSEKSRNKGIEL
Sbjct: 421 AQTAQVCGKALIALINEVLDRAKIEAGKLELEAVPFHIRSIVDDVLSLFSEKSRNKGIEL 480
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AVFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGH FVKVHL E TD K +T
Sbjct: 481 AVFVSDKVPEIVVGDPGRFRQIITNLVGNSVKFTERGHTFVKVHLYEHAKATTDTKADTC 540
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
L GG+ E V SG+ +F TLSG EAAD +NSWD FKHL D E F+ +AS IN+M SN S
Sbjct: 541 LIGGSNESVLISGSQKFKTLSGCEAADDQNSWDVFKHLSD-EDFRFDAS-INVMTSNEAS 598
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E++TLMVCVEDTGIGIPL AQ RVFMPF+QADSSTSRHYGGTGIGLSISKCLVELM GQI
Sbjct: 599 ENITLMVCVEDTGIGIPLKAQSRVFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQI 658
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
SF+SRP+VGSTFSFTAVF CK+ F +++ +EDLP GF+GLKA+VVD KPVRAAVT+
Sbjct: 659 SFISRPEVGSTFSFTAVFSTCKKNAFTKMEKRNAEDLPSGFRGLKALVVDGKPVRAAVTR 718
Query: 720 YHLNRLGIMVKMSSSIKDAS-STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
YHL RLGI+ ++ S++K A+ S KNG +S K QPD+ILVEKD WISGED N L
Sbjct: 719 YHLKRLGILAEVVSNLKVAAGSCGKNGSLTSGSKIQPDMILVEKDTWISGEDGVSNVWKL 778
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
DWK NGH FK PK+ILLATNI+ E DKAKA GFADTVIMKPLRASM+AACL QVL
Sbjct: 779 DWKQNGHAFKFPKMILLATNITNSEFDKAKAAGFADTVIMKPLRASMVAACLLQVLGMGK 838
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
KR G+ +PNGSSF Q LL GKKILVVDDN VNR VAAGALKKFGA VECA S K AL
Sbjct: 839 KRSQGKCMPNGSSFLQSLLCGKKILVVDDNRVNRRVAAGALKKFGADVECADSGKEALKL 898
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD-GTAKRDELHLPI 957
LQ PH FDACFMDIQMPEMDGFEATRRIRQMES+ANEQ MNG S V+ GTA++ + H+PI
Sbjct: 899 LQLPHTFDACFMDIQMPEMDGFEATRRIRQMESQANEQ-MNGESMVEGGTARKGQWHIPI 957
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LAMTADVIHAT DECLKCGMDGYVSKPFEEENLY+ +A+FF SK
Sbjct: 958 LAMTADVIHATHDECLKCGMDGYVSKPFEEENLYQAVARFFDSK 1001
>gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1007
Score = 1575 bits (4079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1005 (76%), Positives = 863/1005 (85%), Gaps = 7/1005 (0%)
Query: 1 MGLKTRKNHCHSVALKVN-EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGM 59
M LK ++++ HSVA+KVN +QMGTK GYTFIQ+NR WLPK L+LW+M MA S++IY GM
Sbjct: 1 MALKMQQSYHHSVAVKVNDQQMGTKRGYTFIQANRTWLPKVLLLWVMAMALFSLTIYNGM 60
Query: 60 DEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAE 119
D +NK+RRKEVLGSMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAE
Sbjct: 61 DADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAE 120
Query: 120 YTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEP 179
YT RTAFERPLLSGVAYA RV+D++R +FERQHG TI TM+ EPSPIRDEYAPV+F QE
Sbjct: 121 YTARTAFERPLLSGVAYARRVIDSERHEFERQHGWTIKTMEREPSPIRDEYAPVIFSQET 180
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+S+++SLDMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP T
Sbjct: 181 VSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPT 240
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
V +RI+ATAGY+GG FD+ESLVENLLGQLAGNQAILVNVYD+TN+SD LIMYG QN DGD
Sbjct: 241 VAQRIEATAGYLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGD 300
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
+SLLHES+LDFGD FRKH M CRYH+KA T WTAL+TAF FVIGLLVGYILYGAAIHIV
Sbjct: 301 LSLLHESKLDFGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIV 360
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNG+LGMLALLLDTDLSSTQRDY
Sbjct: 361 KVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDY 420
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
AQTAQ+CGKALIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSRNKGIEL
Sbjct: 421 AQTAQVCGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIEL 480
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AVFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHL E TD K +T
Sbjct: 481 AVFVSDKVPEIVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTC 540
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
LNGG+ E V SG+ +F TLSG EAAD +NSWD FKH D E F+ +AS IN+M +N S
Sbjct: 541 LNGGSNESVLTSGSQKFKTLSGCEAADDQNSWDVFKHFSD-EDFRFDAS-INVMTNNEAS 598
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
EDV LMVCVEDTGIGIPL AQ RVFMPF+QADSSTSR YGGTGIGLSISKCLVELM GQI
Sbjct: 599 EDVGLMVCVEDTGIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQI 658
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+F+SRP+VGSTFSFTAVFG CK+ F ++++ +E+LP GF+GLKA+VVD PVRA VT+
Sbjct: 659 NFISRPEVGSTFSFTAVFGTCKKNTFNNMEKRNAEELPSGFRGLKALVVDGNPVRATVTR 718
Query: 720 YHLNRLGIMVKMSSSIKDAS-STAKNG-LTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
YHL RLGI+ ++ SS+K A+ KNG LTS K PDIILVEKD WISGED +
Sbjct: 719 YHLKRLGILAEVVSSLKLAAIGCGKNGSLTSGRGKIHPDIILVEKDSWISGEDGVSSVWQ 778
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
LD K NGH FKLPK+ILLATNI+ E D AK GFADTVI+KPLR+SM+AACL QVL
Sbjct: 779 LDSKQNGHAFKLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMG 838
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
KR G+G+PNGSSF Q LL GK+ILVVDDN VNR VAAGALKKFGA ECA S K AL
Sbjct: 839 KKRSQGKGMPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALK 898
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV-DGTAKRDELHLP 956
LQ PH +DACFMDIQMPEMDGFEATRRIRQMES+ANEQ MNG S V +GTA++ + H+P
Sbjct: 899 LLQPPHTYDACFMDIQMPEMDGFEATRRIRQMESQANEQ-MNGESMVEEGTARKVQWHIP 957
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
ILAMTADVIHAT DECLK GMDGYVSKPFEEENLY+ +A+FF +K
Sbjct: 958 ILAMTADVIHATHDECLKSGMDGYVSKPFEEENLYQAVARFFDTK 1002
>gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa]
Length = 1006
Score = 1575 bits (4078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/1004 (76%), Positives = 862/1004 (85%), Gaps = 6/1004 (0%)
Query: 1 MGLKTRKNHCHSVALKVN-EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGM 59
M LK ++++ HSVA+KVN +QMGTK GYTFIQ+NR WLPK L+LW+M MA S++IY GM
Sbjct: 1 MALKMQQSYHHSVAVKVNDQQMGTKRGYTFIQANRTWLPKVLLLWVMAMALFSLTIYNGM 60
Query: 60 DEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAE 119
D +NK+RRKEVLGSMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAE
Sbjct: 61 DADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAE 120
Query: 120 YTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEP 179
YT RTAFERPLLSGVAYA RV+D++R +FERQHG TI TM+ EPSPIRDEYAPV+F QE
Sbjct: 121 YTARTAFERPLLSGVAYARRVIDSERHEFERQHGWTIKTMEREPSPIRDEYAPVIFSQET 180
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+S+++SLDMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP T
Sbjct: 181 VSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPT 240
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
V +RI+ATAGY+GG FD+ESLVENLLGQLAGNQAILVNVYD+TN+SD LIMYG QN DGD
Sbjct: 241 VAQRIEATAGYLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGD 300
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
+SLLHES+LDFGD FRKH M CRYH+KA T WTAL+TAF FVIGLLVGYILYGAAIHIV
Sbjct: 301 LSLLHESKLDFGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIV 360
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNG+LGMLALLLDTDLSSTQRDY
Sbjct: 361 KVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDY 420
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
AQTAQ+CGKALIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSRNKGIEL
Sbjct: 421 AQTAQVCGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIEL 480
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AVFVSDKVPE V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHL E TD K +T
Sbjct: 481 AVFVSDKVPEIVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTC 540
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
LNGG+ E V SG+ +F TLSG EAAD +NSWD FKH D E F+ +AS IN+M +N S
Sbjct: 541 LNGGSNESVLTSGSQKFKTLSGCEAADDQNSWDVFKHFSD-EDFRFDAS-INVMTNNEAS 598
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
EDV LMVCVEDTGIGIPL AQ RVFMPF+QADSSTSR YGGTGIGLSISKCLVELM GQI
Sbjct: 599 EDVGLMVCVEDTGIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQI 658
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+F+SRP+VGSTFSFTAVFG CK+ F ++++ +E+LP GF+GLKA+VVD PVRA VT+
Sbjct: 659 NFISRPEVGSTFSFTAVFGTCKKNTFNNMEKRNAEELPSGFRGLKALVVDGNPVRATVTR 718
Query: 720 YHLNRLGIMVKMSSSIKDAS-STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
YHL RLGI+ ++ SS+K A+ KNG +S K PDIILVEKD WISGED + L
Sbjct: 719 YHLKRLGILAEVVSSLKLAAIGCGKNGSLTSGGKIHPDIILVEKDSWISGEDGVSSVWQL 778
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
D K NGH FKLPK+ILLATNI+ E D AK GFADTVI+KPLR+SM+AACL QVL
Sbjct: 779 DSKQNGHAFKLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGK 838
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
KR G+G+PNGSSF Q LL GK+ILVVDDN VNR VAAGALKKFGA ECA S K AL
Sbjct: 839 KRSQGKGMPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKL 898
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV-DGTAKRDELHLPI 957
LQ PH +DACFMDIQMPEMDGFEATRRIRQMES+ANEQ MNG S V +GTA++ + H+PI
Sbjct: 899 LQPPHTYDACFMDIQMPEMDGFEATRRIRQMESQANEQ-MNGESMVEEGTARKVQWHIPI 957
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LAMTADVIHAT DECLK GMDGYVSKPFEEENLY+ +A+FF +K
Sbjct: 958 LAMTADVIHATHDECLKSGMDGYVSKPFEEENLYQAVARFFDTK 1001
>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1011
Score = 1563 bits (4048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/995 (77%), Positives = 856/995 (86%), Gaps = 6/995 (0%)
Query: 12 SVALKVNEQ-MGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEV 70
SV++KV+EQ MGTK +TFIQ++RAWLPK L+LW+M +AF+S SI+ MD +NK+RRKE
Sbjct: 19 SVSVKVSEQQMGTKGSHTFIQAHRAWLPKLLLLWVMFVAFVSYSIFNNMDAQNKVRRKET 78
Query: 71 LGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPL 130
L SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RT+FERPL
Sbjct: 79 LSSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYNKNPSAIDQETFAEYTARTSFERPL 138
Query: 131 LSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMS 190
LSGVAYA RVV+++RE+FE QHG TI TM+ EPSP+RDEYAPV+F QE +S+++SLDMMS
Sbjct: 139 LSGVAYAQRVVNSEREEFESQHGWTIKTMEKEPSPLRDEYAPVIFSQETVSYIESLDMMS 198
Query: 191 GEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGY 250
GEEDRENIL ARATGKAVLT PFRLL SHHLGVVLTFPVYKSKLPP TV +RI+A+AGY
Sbjct: 199 GEEDRENILNARATGKAVLTSPFRLLNSHHLGVVLTFPVYKSKLPPNPTVSQRIEASAGY 258
Query: 251 IGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDF 310
+GG FDVESLVENLLGQLAGNQAILVNVYD+TNASDPLIMYG QNQDGDMSL+HES+LDF
Sbjct: 259 LGGAFDVESLVENLLGQLAGNQAILVNVYDVTNASDPLIMYGVQNQDGDMSLVHESKLDF 318
Query: 311 GDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQE 370
GD FRKH+MICRYH+KA T WTALTTAF VIGLLVGYILYGAA HIVKVEDDFH+MQE
Sbjct: 319 GDPFRKHQMICRYHEKAPTSWTALTTAFLFSVIGLLVGYILYGAANHIVKVEDDFHEMQE 378
Query: 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430
LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ CGKAL
Sbjct: 379 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKAL 438
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
IALINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFSEKSR+KGIELAVFVSDKVPE
Sbjct: 439 IALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPEI 498
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR 550
VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL E AK ++ LNGG+ + V
Sbjct: 499 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLDENAKATAFAKADSCLNGGSSD-VIV 557
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
S + QF TLSG EAAD RN W+ FKHL+ E FQSN S +N++ +N E+VTL+V VED
Sbjct: 558 SDSCQFKTLSGFEAADDRNGWEAFKHLVADEDFQSNGS-LNVLTTNDACENVTLVVSVED 616
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIGIPL AQ+RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELM G ISFVSRPQVGST
Sbjct: 617 TGIGIPLHAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHISFVSRPQVGST 676
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
FSFTA FG+CK+ F +++ SEDLP F+GLKA+VVD KPVRAAVT YHL RLGI+ +
Sbjct: 677 FSFTAAFGRCKKNKFNKMEKRNSEDLPSSFRGLKAIVVDGKPVRAAVTTYHLKRLGILAE 736
Query: 731 MSSSIKDASST-AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
++SS+K A+ T AKNG S + QPDIILVEKD WISGED G + LL+ K NGHVFKL
Sbjct: 737 VASSLKVAAFTCAKNG--SLKSSAQPDIILVEKDSWISGEDGGSSVWLLERKQNGHVFKL 794
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
PK+ILLATNIS DE +KAKA GFADTVIMKPLRASM+ ACLQQV+ R G+ VPNG
Sbjct: 795 PKMILLATNISSDEFNKAKAAGFADTVIMKPLRASMVGACLQQVMGMGKTRPQGKDVPNG 854
Query: 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909
SSF Q LL GKKILVVDDN VNR VAAGALKKFGA VECA S KAAL LQ PH FDACF
Sbjct: 855 SSFLQSLLYGKKILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKLLQLPHSFDACF 914
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MDIQMPEMDGFEATRRIRQMES+ANEQ+ + G A++ E H+PILAMTADVIHAT+
Sbjct: 915 MDIQMPEMDGFEATRRIRQMESQANEQINGQSMAEGGAARKGEWHVPILAMTADVIHATY 974
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
DECLK GMDGYVSKPFEEENLY+ +AKFFK+KP+S
Sbjct: 975 DECLKSGMDGYVSKPFEEENLYQAVAKFFKAKPIS 1009
>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 1004
Score = 1525 bits (3949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/1007 (74%), Positives = 859/1007 (85%), Gaps = 8/1007 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
M +K +++H HSVA++ NEQ+G+K G TFIQ+ R WLPK L+LW++ +AFISM IY+GMD
Sbjct: 1 MSMKMQQSH-HSVAVRFNEQIGSKKGSTFIQAKRDWLPKFLLLWVLLVAFISMLIYKGMD 59
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
+NK+RRKEVLGSMCDQRARMLQDQF+V+VNHVHAL IL+STFHY KN SA+DQ+TFAEY
Sbjct: 60 ADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYSKNVSAIDQETFAEY 119
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVA+A RVV +RE+FE+QHG TI TM+ EPSPI+DEYAPV+F QE +
Sbjct: 120 TARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIKDEYAPVIFSQETV 179
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILR+R TGKAVLT PFRLLGSHHLGVVLT PVYK+KLP T+
Sbjct: 180 SYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPLNPTM 239
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
+ER +ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN SDPL+MYG Q +DGDM
Sbjct: 240 DERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDM 299
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL HES+LDFGD FRKH+MICRYHQKA T WTALTTAF FVIGLLVGYILYGAA HIVK
Sbjct: 300 SLSHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVK 359
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+MQELKVRAEAAD+AKSQFLATVSHEIRTPMNGILGMLALLLDT+LSSTQRDYA
Sbjct: 360 VEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYA 419
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALIALINEVLDRAKIEA KLELEAV F+LR ILDDVLSLFSEKSR+KG+ELA
Sbjct: 420 QTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELA 479
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVPE V+GDPGRFRQ+ITNLVGNSVKFTE GHIFVKV LAE++MV T+ K ET +
Sbjct: 480 VFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHV 539
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NG +E+G + QF TLSG EAAD +NSWD FKHL + E FQ N S N+MA+N S+
Sbjct: 540 NGNSEDGASHN-KHQFETLSGFEAADNQNSWDTFKHLANEE-FQPNGS-SNLMATNEISD 596
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VT+M+ VEDTGIGIPLSAQ RVFM FMQADSSTSR+YGGTGIGL ISKCLVELM GQI+
Sbjct: 597 IVTVMISVEDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQIN 656
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
FVS+PQVGSTFSFTAVFG+C++ +IK+S E+LP F+GLKAVVVD KPVRAAVT+Y
Sbjct: 657 FVSKPQVGSTFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKY 716
Query: 721 HLNRLGIMVKMSSSIKDASST-AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL-- 777
HL RLGI+V+++SS+K A++ KNG S + QPD+IL+EKD +IS E+ G + L
Sbjct: 717 HLKRLGILVEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQ 776
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
LDWK NGH KLPKLILLAT +S E DKAK GF+DT+IMKPLRASMI ACLQQVL +
Sbjct: 777 LDWKQNGHTLKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSG 836
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
KRQ G+ + NGS+F +GLL GKKILVVDDN VNR VAAGALKKFGA VEC S KAAL
Sbjct: 837 KKRQLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALA 896
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
LQ PH FDACFMDIQMPEMDGFEATRRIR MESK NE ++ + + A++DE H+PI
Sbjct: 897 LLQLPHSFDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKE-NARKDEWHVPI 955
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
LAMTADVIHAT+DECLKCGMDGYVSKPFEEENLY+ +AKFF +KP++
Sbjct: 956 LAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPIT 1002
>gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 985
Score = 1507 bits (3901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/994 (75%), Positives = 840/994 (84%), Gaps = 16/994 (1%)
Query: 11 HSVALKVNEQMGT-KIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKE 69
+S A+K NEQMGT K GYTF+Q+NRAWL K L+ WIMGMAFISM IY GMD +NK+RR E
Sbjct: 6 YSAAMKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNE 65
Query: 70 VLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERP 129
VLGSMC+QRARMLQDQF+V+VNHVHAL +LVSTFHYFKNPSA+DQ+TFAEYT RTAFERP
Sbjct: 66 VLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERP 125
Query: 130 LLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMM 189
LLSGVAYA RV+ ++R+ FE+QHG I TMK EPSPIRDEYAPV+F QE +S+++SLDMM
Sbjct: 126 LLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMM 185
Query: 190 SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAG 249
SGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLP + T E+RI+ATAG
Sbjct: 186 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAG 245
Query: 250 YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELD 309
Y+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SDPL+MYG Q QDGD+SLLHES LD
Sbjct: 246 YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLD 305
Query: 310 FGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ 369
FGD FRKH MICRY Q+A T WTALTTAF FVIGLLVGYILYGAA HI+KVEDDFH MQ
Sbjct: 306 FGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHILKVEDDFHAMQ 365
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
LKVRAEAAD+AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ+DYAQTAQ CGKA
Sbjct: 366 ILKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKA 425
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
LIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSR KG+ELAVFVSDKVPE
Sbjct: 426 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPE 485
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE + D+K +NG ++ +
Sbjct: 486 IVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSK---YVNGISDSDLF 542
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
SG F TLSG EAAD +N WD FKH+I E FQ NA+ +M+ +N G VTLMV VE
Sbjct: 543 ISGGRDFQTLSGCEAADDQNGWDNFKHIIADEDFQLNATPNSMVVANEGCGHVTLMVSVE 602
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTGIGI L AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELM GQI+F+SRPQ+GS
Sbjct: 603 DTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGS 662
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TFSFTAVFGKCK+ D+K+ SE+LPP F+G+KA++VD K VRA+VT+YHL RLGI V
Sbjct: 663 TFSFTAVFGKCKKNSINDLKKPNSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGIKV 722
Query: 730 KMSSSIKDASSTAK-NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
+++SS+ A+S ++ NG T + PD+ILVEKD S E+ G Q L+ K NG+ FK
Sbjct: 723 EVTSSVNMAASLSRENGSTIPGNAILPDMILVEKDTLNSDEECGTIHQ-LNLKLNGNSFK 781
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
LPKLILLATNI+ E DKAKA GFADTVIMKPLRASM+AACLQQVL +N+R+ GRGVPN
Sbjct: 782 LPKLILLATNITTAELDKAKAVGFADTVIMKPLRASMVAACLQQVLGVKNQRR-GRGVPN 840
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
GS+F Q LL GK+IL+VDDN VNR VAAGALKKFGA VECA S KAAL LQ PH FDAC
Sbjct: 841 GSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDAC 900
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
FMDIQMPEMDGFEATR IR ME+K NE G S G K H+PILAMTADVIHAT
Sbjct: 901 FMDIQMPEMDGFEATRLIRMMENKENE-----GESYAGEGK---WHMPILAMTADVIHAT 952
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+DECLKCGMDGYVSKPFEEENLY+E+AKFFK KP
Sbjct: 953 YDECLKCGMDGYVSKPFEEENLYKEVAKFFK-KP 985
>gi|356524638|ref|XP_003530935.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 1016
Score = 1486 bits (3846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 738/1006 (73%), Positives = 838/1006 (83%), Gaps = 5/1006 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
+GLK + H +ALK++EQ G+K YTFIQ++RAWLPK L+LWI+ MA I I+ MD
Sbjct: 3 LGLKMKSLRHHPMALKIHEQAGSKRKYTFIQAHRAWLPKFLMLWILLMALIGCFIFSKMD 62
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
+ K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY++ PSA+DQ+TFAEY
Sbjct: 63 ADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEY 122
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RVV+++RE FE+QHG I TM+ EPS +RDEYAPV+F QE +
Sbjct: 123 TARTAFERPLLSGVAYAQRVVNSERETFEKQHGWVIKTMEREPSLVRDEYAPVIFVQETL 182
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++S+DMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP+ T+
Sbjct: 183 SYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTM 242
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERIKATAGY+GG FDVESLVENLLGQLAG+QAILVNVYD+TN++D LIMYG+QN++GDM
Sbjct: 243 EERIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDHLIMYGNQNEEGDM 302
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL+HES+LDFGDS+RKH MICRYHQKA T W ALTTAF FVI LLVGYILYGA HIVK
Sbjct: 303 SLVHESKLDFGDSYRKHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVK 362
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+M+ELKVRAEAA VAKSQFLATVSHEIRTPMNGILGML LLL T+LSSTQRDYA
Sbjct: 363 VEDDFHQMEELKVRAEAAHVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYA 422
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSRNKG+ELA
Sbjct: 423 QTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELA 482
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP+ V+GDPGRFRQI+TNLVGNSVKFTERGH+FVKVHL+E M + K E L
Sbjct: 483 VFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHVFVKVHLSENRMSTMNGKIEKFL 542
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NGG +E V SG TLSG EAAD RNSWD FKHLI E F +AS+ + + + E
Sbjct: 543 NGGLDEPVHMSGGYNSKTLSGYEAADERNSWDNFKHLIADEEFFYDASVKRVASES--YE 600
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMV VEDTGIGIP SAQ+R+FMPF+QADSSTSRHYGGTGIGLSISKCLVELM G+IS
Sbjct: 601 QVTLMVSVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEIS 660
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+S+PQVGSTFSFTA FG K+ D+K+ EDLP F+GLKA+VVD KPVRAAVT+Y
Sbjct: 661 FISQPQVGSTFSFTADFGTIKKNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRY 720
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI K+++S A S KNG +S FQPDII VEKD W+ ED FN LD
Sbjct: 721 HLKRLGIQAKVANSFNKAVSLCGKNGCLTS-GLFQPDIIFVEKDSWVCVEDGIFNVWQLD 779
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
WK N H+FK+P++ILLATNI DE DKAKA GF+DTVIMKPLRASM+AACLQQVL T K
Sbjct: 780 WKQNRHIFKIPQMILLATNIGNDEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKK 839
Query: 840 RQAGRGV-PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
RQ G+ + PNGS+F + LL GKKILVVDDN VNR VAAGALK FGA V CA S K AL+
Sbjct: 840 RQHGKDMNPNGSTFVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEM 899
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
LQ PH FDACFMDIQMPEMDGFEATR+IR ME+KANEQ MNG K + H+PIL
Sbjct: 900 LQLPHNFDACFMDIQMPEMDGFEATRQIRMMETKANEQQMNGECGEGNGWKDKKYHIPIL 959
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
AMTADVIHAT+DEC+KCGMDGYVSKPFEEENLY+ +AKFF KP S
Sbjct: 960 AMTADVIHATYDECVKCGMDGYVSKPFEEENLYQAVAKFFNPKPTS 1005
>gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
Length = 981
Score = 1482 bits (3837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/994 (74%), Positives = 834/994 (83%), Gaps = 20/994 (2%)
Query: 11 HSVALKVNEQMGT-KIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKE 69
+SV LK NEQMGT K GYTF+Q+NRAWL K L+ WIMGMAFISM IY GMD + K+RR E
Sbjct: 6 NSVGLKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNE 65
Query: 70 VLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERP 129
VLGSMC+QRARMLQDQFNV+VNHVHAL +LVSTFHYFKNPSA+DQ+TFAEYT RTAFERP
Sbjct: 66 VLGSMCEQRARMLQDQFNVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERP 125
Query: 130 LLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMM 189
LLSGVAYA RV+ ++R+ FE+QHG I TM+ EPSP RDEYAPV+F QE +S+++SLDMM
Sbjct: 126 LLSGVAYAQRVIHSERDIFEKQHGWMIRTMEKEPSPDRDEYAPVIFSQETVSYIESLDMM 185
Query: 190 SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAG 249
SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYK KLP T EERI+ATAG
Sbjct: 186 SGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKFKLPSIPTEEERIEATAG 245
Query: 250 YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELD 309
Y+GG FDVESLVENLLGQLAGNQAILVNVYD+TN+SD L+MYG Q QDGD+SL HES LD
Sbjct: 246 YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLD 305
Query: 310 FGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ 369
FGD FRKH MICRY Q+A T WTALTTAF FVIGLLVGYILYGAA HIVKVEDDFH+MQ
Sbjct: 306 FGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 365
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ+DYAQTAQ CGKA
Sbjct: 366 VLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKA 425
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
LIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSR KG+ELAVFVSDKVPE
Sbjct: 426 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPE 485
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE + V D++ +NG ++ G+
Sbjct: 486 IVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDSE---YVNGISDSGLF 542
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
+F TLSG EAAD +NSWD FKHLI + FQSNA+ N +N G + VTLMV VE
Sbjct: 543 VLDGREFQTLSGREAADDQNSWDNFKHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVE 602
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTGIGI L AQ RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM GQI+F+SRPQ+GS
Sbjct: 603 DTGIGILLHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGS 662
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TFSFTAVFGKCK+ D+K+ SE+LPP F+G+KA+VVD K VRA+VT+YHL RLGI+V
Sbjct: 663 TFSFTAVFGKCKKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIV 722
Query: 730 KMSSSIKDASSTAK-NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
++++SI A+S + NG T + PD+ILVEKD S E+ G L+WKPNG K
Sbjct: 723 EVTNSINMAASLFRENGSTLPRNTILPDMILVEKDILNSDEECGI-IHHLNWKPNGSSVK 781
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
PKLILLATNI+ E DKA+A GFADTVIMKPLRA+M+AACLQQVL +N+R+ PN
Sbjct: 782 FPKLILLATNIATAELDKARAAGFADTVIMKPLRATMVAACLQQVLGVKNQRR-----PN 836
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
GS+F Q LL GK+IL+VDDN VNR VAAGALKKFGA VECA S K+AL LQ PH FDAC
Sbjct: 837 GSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDAC 896
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
FMDIQMPEMDGFEATRRIR ME +AN+ G S+ +G KR +PILAMTADVIHAT
Sbjct: 897 FMDIQMPEMDGFEATRRIRTMEVEANK---GGLSATEG--KRP---IPILAMTADVIHAT 948
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
++ECLKCGM+GYVSKPFEEENLY+E+A+FFK KP
Sbjct: 949 YEECLKCGMNGYVSKPFEEENLYKEVARFFK-KP 981
>gi|356513022|ref|XP_003525213.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 1011
Score = 1473 bits (3813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/1006 (72%), Positives = 837/1006 (83%), Gaps = 9/1006 (0%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
+GLK + H +ALK++EQ G+ YTFIQ++RAWLPK L+LWI+ MA I IY MD
Sbjct: 3 LGLKMKSLRHHPMALKLHEQAGSIRKYTFIQAHRAWLPKFLMLWILLMALIGCFIYSKMD 62
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
+ K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY++ PSA+DQ+TFAEY
Sbjct: 63 ADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEY 122
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RVV+++R FE+QHG I TM+ EPS +RDEYAPV+F QE +
Sbjct: 123 TARTAFERPLLSGVAYAQRVVNSERGTFEKQHGWVIKTMEREPSLVRDEYAPVIFAQETL 182
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILRARATGKAVLT PF LLGSHHLGVVLTFPVYKSKLPP+ T+
Sbjct: 183 SYLESLDMMSGEEDRENILRARATGKAVLTSPFNLLGSHHLGVVLTFPVYKSKLPPKPTM 242
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERIKATAGY+GG FDVESLVENLLGQLAG+QAILVNVYD+TN+++PLIMYG+QN++GDM
Sbjct: 243 EERIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTNPLIMYGNQNEEGDM 302
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL+HES+LDFGD +R H MICRYHQKA T W ALTTAF FVI LLVGYILYGA HIVK
Sbjct: 303 SLVHESKLDFGDPYRNHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVK 362
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+M+ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML LLL T+LSSTQRDYA
Sbjct: 363 VEDDFHQMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYA 422
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALIALINEVLDRAKIEA KLELEAV F++R+ILDDVLSLFSEKSRNKG+ELA
Sbjct: 423 QTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELA 482
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP+ V+GDPGRFRQI+TNLVGNSVKFTERGHIFVKVHL+E +M + K E +
Sbjct: 483 VFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENSMSTMNGKTEKFI 542
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
N G+ E V SG TLSG EAAD RNSWD FKHLI E F +AS+ A++ E
Sbjct: 543 NRGSGEPVHMSGAYNSKTLSGYEAADERNSWDNFKHLIADEEFFFDASVKK--AASESYE 600
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMV VEDTGIGIP SAQ+R+FMPF+QADSSTSRHYGGTGIGLSISKCLVELM G+IS
Sbjct: 601 QVTLMVSVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEIS 660
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+S+ QVGSTFSFTA FG ++ D+K+ EDLP F+GLKA+VVD KPVRAAVT+Y
Sbjct: 661 FISQLQVGSTFSFTAGFGTIEKNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRY 720
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI K+++SI A S KNG +S FQPDII VEKD W+ GED FN LD
Sbjct: 721 HLKRLGIQAKVANSINKAVSLCGKNGSLTSV-LFQPDIIFVEKDSWVCGEDEIFNVWQLD 779
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
WK NGH+FK+P++ILLATNI E DKAKA GF+DTVIMKPLRASM+AACLQQVL T K
Sbjct: 780 WKQNGHMFKIPQMILLATNIGNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKK 839
Query: 840 RQAGRGV-PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
RQ G+ + PNGS+ + LL GKKILVVDDN VNR VAAGALK FGA V CA S K AL+
Sbjct: 840 RQHGKDMKPNGSTLVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEM 899
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
LQ PH FDACFMDIQMPEMDGF+AT+RIR ME+KANEQ MNG +G +D+ H+PIL
Sbjct: 900 LQLPHNFDACFMDIQMPEMDGFQATQRIRMMETKANEQQMNG----EGNGWKDKYHIPIL 955
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
AMTADVIHAT+DEC+K GMDGYVSKPFEEENLY+ +AKFF KP +
Sbjct: 956 AMTADVIHATYDECVKYGMDGYVSKPFEEENLYQAVAKFFNPKPTT 1001
>gi|357521451|ref|XP_003631014.1| Histidine kinase [Medicago truncatula]
gi|355525036|gb|AET05490.1| Histidine kinase [Medicago truncatula]
Length = 1029
Score = 1464 bits (3790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 738/1034 (71%), Positives = 843/1034 (81%), Gaps = 38/1034 (3%)
Query: 1 MGLKTR---KNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYR 57
MGL + +N H +A K+ EQ G K YTFIQ++RAWL K + LWI+ MA IS IY
Sbjct: 1 MGLLLKMKMQNQHHPLASKLQEQTGNK-RYTFIQAHRAWLLKLMFLWILLMALISRIIYS 59
Query: 58 GMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTF 117
MD K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY++NPSA+DQ+TF
Sbjct: 60 KMDVGTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETF 119
Query: 118 AEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQ 177
AEYT RTAFERPLLSGVAYA RVV+++REQFE+QHG+ I TM+ E SP+RDEYAPV+F Q
Sbjct: 120 AEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMEREASPVRDEYAPVIFAQ 179
Query: 178 EPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPR 237
E +S+++S+DMMSGEEDRENI+RARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP
Sbjct: 180 ETVSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPN 239
Query: 238 STVEERIKATAG--------------------------YIGGPFDVESLVENLLGQLAGN 271
T EE IKATAG Y+GG FDVESLVENLLGQLAG+
Sbjct: 240 PTTEELIKATAGVIDTTSIIELKKTVSVTRLVFGYILLYVGGSFDVESLVENLLGQLAGH 299
Query: 272 QAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPW 331
QAILVNVYD+TN+SDPLIMYG+Q ++GD+SL+HES+LDFGD +RKH+MICRYHQKA W
Sbjct: 300 QAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNW 359
Query: 332 TALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSH 391
TAL+TA FVI LL+GYILYGA HIVKVEDDFH+MQELKVRAEAADVAKSQFLATVSH
Sbjct: 360 TALSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSH 419
Query: 392 EIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451
EIRTPMNGILGML LLL T+L+STQRDYAQTAQ CGKALIALINEVLDRAKIEA KLELE
Sbjct: 420 EIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELE 479
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
AV F+LR+ILDDVLSLFSEKSR+KG+ELAVFVSDKVP+ V+GDPGRFRQI+TNLVGNSVK
Sbjct: 480 AVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVK 539
Query: 512 FTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571
FTERGHIFVKVHL+E T+ K ET NGG+EE V SG TLSG EAAD RN+W
Sbjct: 540 FTERGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVHASGGYNLKTLSGYEAADERNNW 599
Query: 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQAD 631
D F HLI E F +AS +ASN E VTLMVCVEDTGIGIP SAQ+R+FMPF+QAD
Sbjct: 600 DNFNHLIADEEFFCDAS-TKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQAD 658
Query: 632 SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQS 691
SSTSR+YGGTGIGLSISKCLVELM GQI+F+SRPQVGSTFSFTA FG K+ ++K+
Sbjct: 659 SSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKV 718
Query: 692 KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS-TAKNGLTSSE 750
EDLP F+GLKAVVVD KPVRAAVT+YHL RLGI VK++++I A S KNG SS
Sbjct: 719 NYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQVKVANAINKAVSLCGKNG-ASST 777
Query: 751 DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG 810
FQPDII VEKD W+ GED F+ + LDWK NGH+FK+P++ILLATNIS DE DKAK+
Sbjct: 778 GLFQPDIIFVEKDSWVCGEDGIFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDKAKSA 837
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
GF+DTVIMKPLRASM+ ACLQQVL T KRQ G+ +PNGS+ + LL GKKILVVDDN V
Sbjct: 838 GFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLFGKKILVVDDNVV 897
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
NR VAAGALK FGA V+CA S KAAL+ LQ PH FDACFMDIQMPEMDGFEATRRIR+ME
Sbjct: 898 NRRVAAGALKNFGADVKCADSGKAALEMLQFPHKFDACFMDIQMPEMDGFEATRRIREME 957
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
ANE+ ++ + ++ E HLPILAMTADVIHAT++ECLKCGMDGYVSKPFEEENL
Sbjct: 958 RTANEE-----TNSECGERKSEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENL 1012
Query: 991 YRELAKFFKSKPLS 1004
Y+ +AKFF++KP S
Sbjct: 1013 YQAVAKFFQTKPTS 1026
>gi|356499590|ref|XP_003518621.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 988
Score = 1462 bits (3786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/1004 (72%), Positives = 835/1004 (83%), Gaps = 18/1004 (1%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MGL + + H VAL++++QMG+K YTFIQ++RAWLPK L+LWI+ MA IS IY MD
Sbjct: 1 MGLSLKMQNHHPVALRLHDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMD 60
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
++ K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY+ PSA+DQ+TFAEY
Sbjct: 61 DDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYSYPSAIDQETFAEY 120
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RVV+++RE+FE++HG I TM+ + S +RDEYAPV+F Q+ +
Sbjct: 121 TARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMERKSSLVRDEYAPVIFAQQTV 180
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++S+DMMSGEEDRENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLP + TV
Sbjct: 181 SYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQKPTV 240
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERI+ATAGY+GG FDVESLV+NLLGQL GNQAILVNVYD+TN ++PLIMYG+Q Q+GDM
Sbjct: 241 EERIEATAGYVGGSFDVESLVKNLLGQLDGNQAILVNVYDVTNYTNPLIMYGNQYQEGDM 300
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL HES+LDFGD +RKH+MICRYHQKA T W ALTTAF FVI LVGYILY A HIVK
Sbjct: 301 SLAHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYSAGNHIVK 360
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT+LSSTQRDYA
Sbjct: 361 VEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYA 420
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALI LINEVLDRAKIEA KLELEAV F+LR+I+DDVLSLFSEKSR+KG+ELA
Sbjct: 421 QTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELA 480
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP+ V+GDPGRFRQIITNLVGNSVKFTE+GHIFVKVHLA+ + K ET L
Sbjct: 481 VFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSMMNGKHETFL 540
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NG ++E SG F TLSG EAAD RNSWD FKHLI + + ++S MA+ SE
Sbjct: 541 NGESDEVFYISGDYHFKTLSGCEAADERNSWDNFKHLIADKEYGLDSS-RETMAACESSE 599
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTL VCVEDTGIGIP SAQ+R+FMPF+QADSSTSR+YGGTGIGLSISKCLVELM GQI+
Sbjct: 600 QVTLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQIN 659
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+SRPQVGSTFSFTAV G K+ D K+ EDLP F+G+K +VVD KPVRA+VT+Y
Sbjct: 660 FISRPQVGSTFSFTAVCGAFKKSSVTD-KKENLEDLPSNFRGMKVIVVDGKPVRASVTRY 718
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
HL RLGI+VK+++SI A + + + FQPDII+VEKD WISGED FN W
Sbjct: 719 HLKRLGILVKVANSISKAVALCGKTGSLTSGMFQPDIIMVEKDTWISGEDGIFNI----W 774
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
K NG +FK+PK+ILLATNI E DKAKA GF DTVIMKPLRASM+AACLQQVL +R
Sbjct: 775 KQNGRMFKMPKMILLATNIISAEFDKAKATGFTDTVIMKPLRASMVAACLQQVLGMGKRR 834
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
Q G+ +PNG F LL GKKILVVDDNGVNR VAAGALKKFGA V+CA S KAAL+ LQ
Sbjct: 835 QLGKDMPNG--FLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQ 892
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
PH FDACFMDIQMPEMDGFEAT RIR MESKANE+M NG +E H+PILAM
Sbjct: 893 LPHNFDACFMDIQMPEMDGFEATSRIRMMESKANEEMNNG----------NEWHVPILAM 942
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
TADVIHAT+D+C+KCGMDGYVSKPFEEENLY+E+AKFFKSK +S
Sbjct: 943 TADVIHATYDKCMKCGMDGYVSKPFEEENLYQEVAKFFKSKTMS 986
>gi|113911568|gb|ABI48270.1| histidine kinase 2 [Lotus japonicus]
Length = 996
Score = 1459 bits (3777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/1005 (71%), Positives = 827/1005 (82%), Gaps = 12/1005 (1%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MGL + H +QMG+K YTFIQ +RAWLP L +W++ MAFIS +IY MD
Sbjct: 1 MGLSLKMQSHH-------DQMGSKRKYTFIQDHRAWLPWFLFMWVLLMAFISWNIYSKMD 53
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
++ K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY++NPSA+D++TFAEY
Sbjct: 54 DDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDEETFAEY 113
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RV++++RE+FE+QHG I TM+ E S +RDEYAPV+F QE +
Sbjct: 114 TARTAFERPLLSGVAYAQRVINSERERFEKQHGWVIKTMERESSQVRDEYAPVIFAQETV 173
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEED+ENILRARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP+ T+
Sbjct: 174 SYLESLDMMSGEEDQENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTL 233
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERI+ATAGY+GG FDVESLVENLLGQLAGNQAILVNVYD+TN S+PL MYG+ +++ DM
Sbjct: 234 EERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNCSNPLTMYGNHSEEADM 293
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL +ES+LDFGD +R H+MICRYHQK T W ALTTA FVI +LVGYILY A HIVK
Sbjct: 294 SLSYESKLDFGDPYRIHQMICRYHQKEPTNWVALTTAVLFFVILILVGYILYEAGNHIVK 353
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH+MQ+LKVRAEAADVAKSQFLATVSHEIRTPMNGILGM+ALLLDT+LSSTQRDYA
Sbjct: 354 VEDDFHEMQDLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMMALLLDTELSSTQRDYA 413
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALI LINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFSEKSR+K +ELA
Sbjct: 414 QTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKSLELA 473
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP+ ++GDPGRFRQIITNLVGNSVKFTE+GHIFVKVHL + + K ET+L
Sbjct: 474 VFVSDKVPDILMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLEDNINPVMNGKHETIL 533
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NG ++E SG F TLSG EA D +NSW+ FKHLI E + S M A++ SE
Sbjct: 534 NGESDEVFHLSGDCHFKTLSGCEAVDEQNSWENFKHLIANEERYFDCS-SKMAATSESSE 592
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
V L VCVEDTG GIP SAQ+ +FMPF+QADSSTSR+YGGTGIGLSISKCLVELM GQI+
Sbjct: 593 QVKLRVCVEDTGTGIPFSAQDTIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQIN 652
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F SRPQVGSTFSFTA FG K+ D+K+ EDLP F+GLK +VVD KPVRAAVT+Y
Sbjct: 653 FTSRPQVGSTFSFTAAFGMFKKNSVSDMKKLNLEDLPSSFRGLKVIVVDGKPVRAAVTRY 712
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L RLGI+VK+++SI A + KNG +S FQPDII+VEKD WISGE GFN LD
Sbjct: 713 LLKRLGILVKVANSISQAVALCGKNGSLTS-GMFQPDIIMVEKDTWISGEHGGFNIWKLD 771
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+K NGHVFK+PK+ILLATNI E D+AKA GF DTVIMKPLR+SM+AACLQQVL K
Sbjct: 772 FKQNGHVFKMPKMILLATNIKNTEFDQAKATGFTDTVIMKPLRSSMVAACLQQVLGIGKK 831
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
RQ G+ + NGSSF Q LL GKKILVVDDN VNR VAAGALKKFGA V+C S KAAL+ L
Sbjct: 832 RQLGQDMLNGSSFLQSLLYGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEML 891
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q PHCFDACFMDIQMPEMDGFEAT +IR ME KANEQ+ G +G ++ E H+PILA
Sbjct: 892 QLPHCFDACFMDIQMPEMDGFEATSKIRMMERKANEQV--NGELGEGNTRKSEWHVPILA 949
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
MTADVIHAT+D+CLKCGMDGYVSKPFEE+ LY+E+AKFFKSK +S
Sbjct: 950 MTADVIHATYDKCLKCGMDGYVSKPFEEQKLYQEVAKFFKSKTIS 994
>gi|356521173|ref|XP_003529232.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 987
Score = 1436 bits (3716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1006 (71%), Positives = 825/1006 (82%), Gaps = 23/1006 (2%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MGL + H VAL++++QMG+K YTFIQ++RAWLPK L+LWI+ MA IS IY MD
Sbjct: 1 MGLSLKMQSHHPVALRLHDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMD 60
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
++ K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY++ PSA+DQ+TFAEY
Sbjct: 61 DDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEY 120
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RVV+++RE+FE++HG I TM+ + S +RDEYAPV+F QE +
Sbjct: 121 TARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMERKSSLVRDEYAPVIFAQETV 180
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILRARATGKAVLT PF LLGSHHLGVVLTFPVYKSKLP + TV
Sbjct: 181 SYLESLDMMSGEEDRENILRARATGKAVLTSPFSLLGSHHLGVVLTFPVYKSKLPQKPTV 240
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERI+ATAGY+GG FDVESLV+NLLGQL GNQAILVNVYD+TN ++PL+MYG+ ++GDM
Sbjct: 241 EERIEATAGYVGGSFDVESLVKNLLGQLDGNQAILVNVYDITNYTNPLVMYGNLYEEGDM 300
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL+HES+LDFGD +RKH+MICRYHQKA T W ALTTAF FVI LVGYILYGA HIVK
Sbjct: 301 SLVHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYGAGNHIVK 360
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFH M+ELKVRAEAAD+AKSQFLATVSHEIRTPMNGILGMLALLLDT+LSSTQRDYA
Sbjct: 361 VEDDFHAMEELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYA 420
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALI LINEVLDRAKIEA KLELEAV F+LR+I+DDVLSLFSEKSR+KG+ELA
Sbjct: 421 QTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELA 480
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP+ V+GDPGRFRQIITNLVGNSVKFTE+GHIFVKVHLA+ + K +T L
Sbjct: 481 VFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSIMNGKHDTFL 540
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NG ++E SG F TLSG EAAD RNSWD FKHLI E + ++S MA+ SE
Sbjct: 541 NGESDEVFHISGDYHFKTLSGCEAADERNSWDNFKHLIADEEYGLDSS-RETMAACESSE 599
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTL VCVEDTGIGIP SAQ+ +FMPF+QADSSTSR+YGGTGIGLSISKCLVELM GQI+
Sbjct: 600 QVTLRVCVEDTGIGIPFSAQDGIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQIN 659
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKS--EDLPPGFKGLKAVVVDEKPVRAAVT 718
F+SRPQVGSTFSFTAV C+ + + K EDLP F+G+K +VVD KPVRAAVT
Sbjct: 660 FISRPQVGSTFSFTAV---CEAFKKSSVTNKKKNLEDLPSSFRGMKVIVVDGKPVRAAVT 716
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+YHL RLGI+VK+++ I A + + FQPDII+VEKD WI+GED FN
Sbjct: 717 RYHLKRLGILVKVANRISKAVALCGKSGSLKSGMFQPDIIMVEKDTWITGEDGIFNT--- 773
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
WK NG K+PK+ILLATNIS E DKAK GF DTVIMKPLRASM+AACLQQVL
Sbjct: 774 -WKHNGRTIKMPKMILLATNISNAEFDKAKFTGFTDTVIMKPLRASMVAACLQQVLGMGK 832
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
KRQ G+ +PNG F LL GKKILVVDDNGVNR VAAGALKKFGA V+CA S K AL+
Sbjct: 833 KRQLGKDMPNG--FLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKVALEM 890
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
LQ PH FDACFMDIQMPEMDGFEAT RIR MESKANE+ MNG E H+PIL
Sbjct: 891 LQLPHNFDACFMDIQMPEMDGFEATSRIRMMESKANEE-MNGS----------EWHVPIL 939
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
AMTADVI AT+D+C+KCGMDGYVSKPFEEENLY+E+AKFFKSK +S
Sbjct: 940 AMTADVILATYDKCVKCGMDGYVSKPFEEENLYQEVAKFFKSKTIS 985
>gi|113911570|gb|ABI48271.1| histidine kinase 1 [Lotus japonicus]
gi|118140476|emb|CAL18381.1| cytokinin receptor 1 [Lotus japonicus]
gi|118140478|emb|CAL18382.1| cytokinin receptor 1 [Lotus japonicus]
Length = 993
Score = 1408 bits (3645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/1007 (71%), Positives = 818/1007 (81%), Gaps = 21/1007 (2%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
+G K +++H H VALK++EQ G++ +TFIQ+ R W L +W + MA IY MD
Sbjct: 3 LGFKMQQSH-HPVALKLHEQAGSQRKFTFIQNFRNWFLPLLFVWFIVMAAFGACIYHKMD 61
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
E K+RRKEVLGS+CDQRARMLQDQF+V+VNHVHAL ILVSTFHY++N SA+DQ+TFAEY
Sbjct: 62 AETKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNTSAIDQETFAEY 121
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPL+SGVAYA RVV ++RE+FE+QHG I TM+ PS +RDEYA V+F QE +
Sbjct: 122 TARTAFERPLMSGVAYAQRVVHSERERFEKQHGWVIKTMERVPSGVRDEYAAVIFAQETV 181
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++S+DMMSGEEDRENILRARATGKAVLT PFRLL SHHLGVVLTFPVYKSKLPP T
Sbjct: 182 SYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLDSHHLGVVLTFPVYKSKLPPEPTT 241
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EE IKA AGYIGG FDVESLVENLLGQLAGNQAILV VYD+TN+SDPLIMYG Q ++GDM
Sbjct: 242 EEVIKAIAGYIGGSFDVESLVENLLGQLAGNQAILVKVYDITNSSDPLIMYGSQYEEGDM 301
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL+HES+LDFGD +RKH MICRYHQ+A T W A TTAF FVI LVGYILY A HIVK
Sbjct: 302 SLVHESKLDFGDPYRKHHMICRYHQQAPTNWIAYTTAFLFFVILCLVGYILYAAGTHIVK 361
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDD++ MQ+LKV+AEAAD+AKSQFLATVSHEIRTPMNGILGML LLL T+LSSTQRDYA
Sbjct: 362 VEDDYNAMQDLKVKAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYA 421
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGKALIALINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFSEKSR+KG+ELA
Sbjct: 422 QTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELA 481
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP+ V+GDPGRFRQI+TNLVGNSVKFTERGHIFVKVHLAE+ + K ET L
Sbjct: 482 VFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEKRQCTMNGKCETFL 541
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NGG ++ + SG+ TLSG EAAD RNSWD FKH I E F +AS + +AS+ E
Sbjct: 542 NGGCDDVLHVSGSYNLKTLSGYEAADERNSWDNFKHHIADEEFFFDAS-VKKLASSESYE 600
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
VTLMV VEDTGIGI SAQ+ +FMPF+QADSSTSR+YGGTGIGLSISKCLVELM GQI+
Sbjct: 601 QVTLMVSVEDTGIGISFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQIN 660
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+SRPQVGSTFSFTA FG K+ D+K+ EDLP F+GLKA+VVD KPVRAAVT+Y
Sbjct: 661 FISRPQVGSTFSFTADFGTFKKNSTTDMKKLNFEDLPSSFRGLKAIVVDGKPVRAAVTRY 720
Query: 721 HLNRLGIMVKMSSSIKDASS-TAKNG-LTSSEDKFQPDIILVEKDCWISGEDSG-FNAQL 777
HL RLGI K++ SI A S KNG LTS+ FQPDII VEKD W+SGED G FNA
Sbjct: 721 HLKRLGIQAKVAISINKAVSLCGKNGSLTSA--LFQPDIIFVEKDSWVSGEDGGIFNA-- 776
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
FK+P++ILLATNI E DKAKA GF+DTVIMKPLRASM+AACLQQV T
Sbjct: 777 ---------FKMPQMILLATNICNAEFDKAKAAGFSDTVIMKPLRASMLAACLQQVFGTG 827
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
RQ G+ + NGSS + LL GKKILVVDDN VNR VAAGALK FGA V+CAAS KAAL+
Sbjct: 828 KTRQFGKDMSNGSSV-RSLLCGKKILVVDDNLVNRRVAAGALKNFGADVKCAASGKAALE 886
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
LQ PH FDACFMDIQMPEMDGFEATRRIR ME +A+EQ+ + +G K+ E H+PI
Sbjct: 887 MLQYPHDFDACFMDIQMPEMDGFEATRRIRMMEREASEQLKSESGEENG--KKSEFHMPI 944
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
LAMTADVIHAT+D+CL CGMDGYVSKPFEEENLY+ +AKFFKSKP S
Sbjct: 945 LAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKPAS 991
>gi|297817796|ref|XP_002876781.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
gi|297322619|gb|EFH53040.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
Length = 1060
Score = 1385 bits (3586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/1008 (69%), Positives = 801/1008 (79%), Gaps = 39/1008 (3%)
Query: 11 HSVALKVN---EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRR 67
HSVA+K+N +QMG K G TFIQ +RA LPKAL+LWI+ + FIS IY+ MD+ NK+RR
Sbjct: 79 HSVAVKMNSNNDQMGNKKGSTFIQDHRALLPKALILWIIIVGFISSGIYQWMDDTNKVRR 138
Query: 68 KEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFE 127
+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RTAFE
Sbjct: 139 EEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTAFE 198
Query: 128 RPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQEPMSHVKSL 186
RPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q+ +S+++SL
Sbjct: 199 RPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSLSYLESL 258
Query: 187 DMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKA 246
DMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP TV+ERI A
Sbjct: 259 DMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVQERIAA 318
Query: 247 TAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHES 306
TAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++GD SL HES
Sbjct: 319 TAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLSHES 378
Query: 307 ELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFH 366
+LDFGD FRKHKMICRYHQKA P LTT F IG LVGYILYGAA+HIVKVEDDFH
Sbjct: 379 KLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFH 438
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA+LLDT+LSSTQRDYAQTAQ+C
Sbjct: 439 EMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVC 498
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
GKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNKGIELAVFVSDK
Sbjct: 499 GKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDK 558
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VPE V GD GRFRQII NLVGNSVKFTERGHIFVKVHL E++ K +A+ +T LNG +EE
Sbjct: 559 VPEIVKGDSGRFRQIIINLVGNSVKFTERGHIFVKVHLVEQS--KDEAEPKTALNGVSEE 616
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ S +NTLSG EAADGRNSWD FKHL+ E S I S +V LMV
Sbjct: 617 MIVVSKPSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDI---------SSNVRLMV 667
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
+EDTGIGIPL+AQ RV MPFMQADSSTSR+YGGTGIGLSISKCLVELMRGQI F+SRP
Sbjct: 668 SIEDTGIGIPLAAQGRVLMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQIHFISRPH 727
Query: 667 VGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
+GSTF FTAV KC K +K+ E LP FKG++A+VVD KPVRAAVT+YH+ RL
Sbjct: 728 IGSTFWFTAVLEKCDKCSAINHLKKPNVEHLPSTFKGMRAIVVDAKPVRAAVTKYHMKRL 787
Query: 726 GIMVKMSSSIKDASSTA----KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
GI V + +S+K A A +NG + K Q D+ILVEKD WIS ED ++L+ +
Sbjct: 788 GINVDVVTSLKTAVVAAAAFGRNG-SPLPTKPQLDMILVEKDSWISTEDIDSEIRVLNSR 846
Query: 782 PNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL R
Sbjct: 847 FNGNVHLKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTR 906
Query: 841 QAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
Q P GSS + LL KKILVVDDN VNR VAAGALKKFGA V CA S + AL
Sbjct: 907 QQH---PEGSSPATLKSLLTEKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGL 963
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
LQ PH FDACFMDIQMP+MDGFEATR+IR ME +A E+ E HLPIL
Sbjct: 964 LQIPHNFDACFMDIQMPQMDGFEATRQIRMMEIEAKEK------------TNLEWHLPIL 1011
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
AMTADVIHAT++ECLK GMDGYVSKPFEEENLY+ +AK FK P+S +
Sbjct: 1012 AMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPISAS 1059
>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 1383 bits (3579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/1009 (70%), Positives = 802/1009 (79%), Gaps = 42/1009 (4%)
Query: 11 HSVALKVN-----EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
HSVA+K+N + MG K G TFIQ +RA LPKAL+LWI+ + FIS IY+ MD+ NKI
Sbjct: 96 HSVAVKMNNNNNNDLMGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKI 155
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RTA
Sbjct: 156 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 215
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQEPMSHVK 184
FERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q+ +S+++
Sbjct: 216 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLE 275
Query: 185 SLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI 244
SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP TVEERI
Sbjct: 276 SLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERI 335
Query: 245 KATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLH 304
ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++ D SL H
Sbjct: 336 AATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSH 395
Query: 305 ESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
ES+LDFGD FRKHKMICRYHQKA P LTT F IG LVGYILYGAA+HIVKVEDD
Sbjct: 396 ESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDD 455
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
FH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA+LLDT+LSSTQRDYAQTAQ
Sbjct: 456 FHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQ 515
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+CGKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNKGIELAVFVS
Sbjct: 516 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVS 575
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG- 543
DKVPE V GD GRFRQII NLVGNSVKFTE+GHIFVKVHLAE++ K +++ + LNGG
Sbjct: 576 DKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQS--KDESEPKNALNGGV 633
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+EE + S +NTLSG EAADGRNSWD FKHL+ E S I S +V
Sbjct: 634 SEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDI---------SSNVR 684
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
LMV +EDTGIGIPL AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELMRGQI+F+S
Sbjct: 685 LMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFIS 744
Query: 664 RPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
RP +GSTF FTAV KC K +K+ E LP FKG+KA+VVD KPVRAAVT+YH+
Sbjct: 745 RPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMKAIVVDAKPVRAAVTRYHM 804
Query: 723 NRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
RLGI V + +S+K A A +NG + K Q D+ILVEKD WIS ED+ +LL
Sbjct: 805 KRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQLDMILVEKDSWISTEDNDSEIRLL 863
Query: 779 DWKPNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ + NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL
Sbjct: 864 NSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELR 923
Query: 838 NKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
RQ P GSS + LL GKKILVVDDN VNR VAAGALKKFGA V CA S + A
Sbjct: 924 KTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVA 980
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L LQ PH FDACFMDIQMP+MDGFEATR+IR ME +A E+ E HL
Sbjct: 981 LGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKEAKEK------------TNLEWHL 1028
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
PILAMTADVIHAT++ECLK GMDGYVSKPFEEENLY+ +AK FK P+S
Sbjct: 1029 PILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPIS 1077
>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 1382 bits (3577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/1009 (70%), Positives = 802/1009 (79%), Gaps = 42/1009 (4%)
Query: 11 HSVALKVN-----EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
HSVA+K+N + MG K G TFIQ +RA LPKAL+LWI+ + FIS IY+ MD+ NKI
Sbjct: 73 HSVAVKMNNNNNNDLMGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKI 132
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RTA
Sbjct: 133 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 192
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQEPMSHVK 184
FERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q+ +S+++
Sbjct: 193 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLE 252
Query: 185 SLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI 244
SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP TVEERI
Sbjct: 253 SLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERI 312
Query: 245 KATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLH 304
ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++ D SL H
Sbjct: 313 AATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSH 372
Query: 305 ESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
ES+LDFGD FRKHKMICRYHQKA P LTT F IG LVGYILYGAA+HIVKVEDD
Sbjct: 373 ESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDD 432
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
FH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA+LLDT+LSSTQRDYAQTAQ
Sbjct: 433 FHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQ 492
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+CGKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNKGIELAVFVS
Sbjct: 493 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVS 552
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG- 543
DKVPE V GD GRFRQII NLVGNSVKFTE+GHIFVKVHLAE++ K +++ + LNGG
Sbjct: 553 DKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQS--KDESEPKNALNGGV 610
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+EE + S +NTLSG EAADGRNSWD FKHL+ E S I S +V
Sbjct: 611 SEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDI---------SSNVR 661
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
LMV +EDTGIGIPL AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELMRGQI+F+S
Sbjct: 662 LMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFIS 721
Query: 664 RPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
RP +GSTF FTAV KC K +K+ E LP FKG+KA+VVD KPVRAAVT+YH+
Sbjct: 722 RPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMKAIVVDAKPVRAAVTRYHM 781
Query: 723 NRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
RLGI V + +S+K A A +NG + K Q D+ILVEKD WIS ED+ +LL
Sbjct: 782 KRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQLDMILVEKDSWISTEDNDSEIRLL 840
Query: 779 DWKPNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ + NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL
Sbjct: 841 NSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELR 900
Query: 838 NKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
RQ P GSS + LL GKKILVVDDN VNR VAAGALKKFGA V CA S + A
Sbjct: 901 KTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVA 957
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L LQ PH FDACFMDIQMP+MDGFEATR+IR ME +A E+ E HL
Sbjct: 958 LGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKEAKEK------------TNLEWHL 1005
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
PILAMTADVIHAT++ECLK GMDGYVSKPFEEENLY+ +AK FK P+S
Sbjct: 1006 PILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPIS 1054
>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis histidine
kinase 4; Short=AtHK4; AltName: Full=Cytokinin receptor
CYTOKININ RESPONSE 1; Short=AtCRE1; Short=Cytokinin
receptor CRE1; AltName: Full=Phosphoprotein phosphatase
AHK4; AltName: Full=Protein AUTHENTIC HIS-KINASE 4;
AltName: Full=Protein ROOT AS IN WOL 1; AltName:
Full=Protein WOODEN LEG
gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1080
Score = 1379 bits (3569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/1009 (69%), Positives = 800/1009 (79%), Gaps = 42/1009 (4%)
Query: 11 HSVALKVN-----EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
HSVA+K+N + MG K G TFIQ +RA LPKAL+LWI+ + FIS IY+ MD+ NKI
Sbjct: 96 HSVAVKMNNNNNNDLMGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKI 155
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RTA
Sbjct: 156 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 215
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQEPMSHVK 184
FERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q+ +S+++
Sbjct: 216 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLE 275
Query: 185 SLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI 244
SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP TVEERI
Sbjct: 276 SLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERI 335
Query: 245 KATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLH 304
ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++ D SL H
Sbjct: 336 AATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSH 395
Query: 305 ESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
ES+LDFGD FRKHKMICRYHQKA P LTT F IG LVGYILYGAA+HIVKVEDD
Sbjct: 396 ESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDD 455
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
FH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA+LLDT+LSSTQRDYAQTAQ
Sbjct: 456 FHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQ 515
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+CGKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNK IELAVFVS
Sbjct: 516 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVS 575
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG- 543
DKVPE V GD GRFRQII NLVGNSVKFTE+GHIFVKVHLAE++ K +++ + LNGG
Sbjct: 576 DKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQS--KDESEPKNALNGGV 633
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+EE + S +NTLSG EAADGRNSWD FKHL+ E S I S +V
Sbjct: 634 SEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDI---------SSNVR 684
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
LMV +EDTGIGIPL AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELMRGQI+F+S
Sbjct: 685 LMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFIS 744
Query: 664 RPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
RP +GSTF FTAV KC K +K+ E LP FKG+KA+VVD KPVRAAVT+YH+
Sbjct: 745 RPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMKAIVVDAKPVRAAVTRYHM 804
Query: 723 NRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
RLGI V + +S+K A A +NG + K Q D+ILVEKD WIS ED+ +LL
Sbjct: 805 KRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQLDMILVEKDSWISTEDNDSEIRLL 863
Query: 779 DWKPNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ + NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL
Sbjct: 864 NSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELR 923
Query: 838 NKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
RQ P GSS + LL GKKILVVDDN VNR VAAGALKKFGA V CA S + A
Sbjct: 924 KTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVA 980
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L LQ PH FDACFMDIQMP+MDGFEATR+IR ME + E+ E HL
Sbjct: 981 LGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEK------------TNLEWHL 1028
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
PILAMTADVIHAT++ECLK GMDGYVSKPFEEENLY+ +AK FK P+S
Sbjct: 1029 PILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPIS 1077
>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1057
Score = 1379 bits (3569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/1009 (69%), Positives = 800/1009 (79%), Gaps = 42/1009 (4%)
Query: 11 HSVALKVN-----EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
HSVA+K+N + MG K G TFIQ +RA LPKAL+LWI+ + FIS IY+ MD+ NKI
Sbjct: 73 HSVAVKMNNNNNNDLMGNKKGSTFIQEHRALLPKALILWIIIVGFISSGIYQWMDDANKI 132
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFAEYT RTA
Sbjct: 133 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 192
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQEPMSHVK 184
FERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q+ +S+++
Sbjct: 193 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQDSVSYLE 252
Query: 185 SLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI 244
SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP TVEERI
Sbjct: 253 SLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERI 312
Query: 245 KATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLH 304
ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++ D SL H
Sbjct: 313 AATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSH 372
Query: 305 ESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
ES+LDFGD FRKHKMICRYHQKA P LTT F IG LVGYILYGAA+HIVKVEDD
Sbjct: 373 ESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDD 432
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
FH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA+LLDT+LSSTQRDYAQTAQ
Sbjct: 433 FHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQ 492
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+CGKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNK IELAVFVS
Sbjct: 493 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVS 552
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG- 543
DKVPE V GD GRFRQII NLVGNSVKFTE+GHIFVKVHLAE++ K +++ + LNGG
Sbjct: 553 DKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQS--KDESEPKNALNGGV 610
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+EE + S +NTLSG EAADGRNSWD FKHL+ E S I S +V
Sbjct: 611 SEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQSLSEFDI---------SSNVR 661
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
LMV +EDTGIGIPL AQ RVFMPFMQADSSTSR+YGGTGIGLSISKCLVELMRGQI+F+S
Sbjct: 662 LMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFIS 721
Query: 664 RPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
RP +GSTF FTAV KC K +K+ E LP FKG+KA+VVD KPVRAAVT+YH+
Sbjct: 722 RPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMKAIVVDAKPVRAAVTRYHM 781
Query: 723 NRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
RLGI V + +S+K A A +NG + K Q D+ILVEKD WIS ED+ +LL
Sbjct: 782 KRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQLDMILVEKDSWISTEDNDSEIRLL 840
Query: 779 DWKPNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ + NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL
Sbjct: 841 NSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELR 900
Query: 838 NKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
RQ P GSS + LL GKKILVVDDN VNR VAAGALKKFGA V CA S + A
Sbjct: 901 KTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVA 957
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L LQ PH FDACFMDIQMP+MDGFEATR+IR ME + E+ E HL
Sbjct: 958 LGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEK------------TNLEWHL 1005
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
PILAMTADVIHAT++ECLK GMDGYVSKPFEEENLY+ +AK FK P+S
Sbjct: 1006 PILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPIS 1054
>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
Length = 1070
Score = 1377 bits (3564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/1007 (69%), Positives = 803/1007 (79%), Gaps = 40/1007 (3%)
Query: 11 HSVALKVN-----EQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
HSVA+K+N +Q+G K G TFIQ +RA LPK L+LW + + FIS IY+ MD+ +K+
Sbjct: 84 HSVAVKMNNGNNNDQVGNKKGSTFIQEHRALLPKGLILWTIIVGFISRGIYQWMDDTSKV 143
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ TFA+YT RTA
Sbjct: 144 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQGTFADYTARTA 203
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKS-EPSPIRDEYAPVMFYQEPMSHVK 184
FERPLLSGVAYA +VV+A+RE FE QH I TM + EPSP+RDEYAPV+F Q+ +S+++
Sbjct: 204 FERPLLSGVAYAEKVVNAEREMFESQHNWVIKTMDTGEPSPVRDEYAPVIFSQDSVSYLE 263
Query: 185 SLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI 244
SLDMMSGEEDRENILRAR TGKAVLT PFRLL SHHLGVVLTFPVYK+ LP TV+ERI
Sbjct: 264 SLDMMSGEEDRENILRARETGKAVLTSPFRLLASHHLGVVLTFPVYKASLPKNPTVQERI 323
Query: 245 KATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLH 304
ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++GD SL H
Sbjct: 324 AATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLYH 383
Query: 305 ESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
ES+LDFGD FRKHKMICRY QKA P LTT F IG LVGYILYGAA+HIVKVEDD
Sbjct: 384 ESKLDFGDPFRKHKMICRYLQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAVHIVKVEDD 443
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
FH+MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA+LLDT+LSSTQRDYAQTAQ
Sbjct: 444 FHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQ 503
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+CGKALIALINEVLDRAKIEA KLELE+V F++R+ILDDVLSLFSE+SRNKGIELAVFVS
Sbjct: 504 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVS 563
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG- 543
DKVPE V GD GRFRQII NLVGNSVKFTE+GHIFVKVHLAE++ K A+ + LNGG
Sbjct: 564 DKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQS--KDGAESKPALNGGV 621
Query: 544 -TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
+E+ S +NTLSG EAADGRNSWD FKHL+ +E +++ S +V
Sbjct: 622 ASEDITAASKPSSYNTLSGYEAADGRNSWDSFKHLLSSEELLTSSEF-------EASSNV 674
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
LMV +EDTGIGIPL+AQ RVFMPFMQADSSTSR YGGTGIGLSISKCLVELMRGQISFV
Sbjct: 675 RLMVSIEDTGIGIPLTAQGRVFMPFMQADSSTSRTYGGTGIGLSISKCLVELMRGQISFV 734
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
SRP+VGSTF FTAVF +C + +K+ E+LP F+G++A+VVD KPVRAAVT+YH+
Sbjct: 735 SRPRVGSTFWFTAVFERCDKC---SLKKPTVENLPSSFRGMRAIVVDAKPVRAAVTRYHM 791
Query: 723 NRLGIMVKMSSSIKDASSTA--KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
RLGI V + +S++ A STA +NG + D+ILVEKD WIS ED + ++
Sbjct: 792 KRLGISVDVMTSLRTAVSTASGRNGSPLPSGTTKLDMILVEKDSWISTEDIDAEIRQMNS 851
Query: 781 KPNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ NG+V K PKL L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL
Sbjct: 852 RTNGNVRHKTPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKA 911
Query: 840 RQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
RQ P GSS + LL GKKILV+DDN VNR VAAGALKKFGA V CA S + AL
Sbjct: 912 RQQH---PEGSSPATLKSLLTGKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALG 968
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
LQ PH FDACFMDIQMP+MDGFEATR+IR ME +A E+ + E HLPI
Sbjct: 969 LLQIPHSFDACFMDIQMPQMDGFEATRQIRMMEKEAKEK------------TKLEWHLPI 1016
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
LAMTADVIHAT++ECLK GMDGYVSKPFEEENLY+ +AK FK+ P+S
Sbjct: 1017 LAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKANPIS 1063
>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
Length = 985
Score = 1358 bits (3516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1003 (68%), Positives = 804/1003 (80%), Gaps = 23/1003 (2%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MG K + +H VA+KVNEQ +K + F+ S + LPK LWI+ F+S+ +Y MD
Sbjct: 1 MGEKMQSHHM--VAVKVNEQFNSKRKHRFVPS-QYLLPKMFALWIIFCTFVSIGVYFYMD 57
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
K +RKE L SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSALDQ TFAEY
Sbjct: 58 ANQKEKRKEGLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYEKNPSALDQKTFAEY 117
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA RV++++RE+FER+HG TI TM+ EPSPIRDEY+PV+F QE +
Sbjct: 118 TARTAFERPLLSGVAYAERVLNSEREEFEREHGWTIRTMEREPSPIRDEYSPVIFSQETV 177
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S+++SLDMMSGEEDRENILRARA+GKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP T
Sbjct: 178 SYIESLDMMSGEEDRENILRARASGKAVLTNPFRLLGSHHLGVVLTFPVYKSKLPPNPTE 237
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
+ER++ATAGY+GG FDVESLVE+LLGQLA N I+VNVYD+TN+SD LIMYG QN GD
Sbjct: 238 QERVEATAGYLGGAFDVESLVESLLGQLAANHPIIVNVYDVTNSSDSLIMYGHQNPKGDA 297
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL H S+LDFGD FRKH+MICRY A A+TTA F+F I +L+GY Y +A HI K
Sbjct: 298 SLKHVSKLDFGDPFRKHEMICRYLHDAPISRGAVTTAIFIFTIFVLIGYTGYKSASHINK 357
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDFHKMQELKV+AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL STQRDYA
Sbjct: 358 VEDDFHKMQELKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLRSTQRDYA 417
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CGK+LI LINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFS++SR KG+ELA
Sbjct: 418 QTAQACGKSLITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSDESRRKGVELA 477
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVP V+GDPGRFRQ+ITNLVGNSVKFTE+GHIFV+VHLAE+T K K+ T L
Sbjct: 478 VFVSDKVPGIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVQVHLAEQT--KDGVKNNTCL 535
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
G +E + TLSG E A +N+WD KH I G ++ A++ S+
Sbjct: 536 TGESE--------SVYETLSGYETAASQNTWDSLKHTIADNGLYYKSATKE--ANDDLSQ 585
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+VT+MV VEDTGIGIP+ AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM GQI
Sbjct: 586 NVTVMVSVEDTGIGIPIQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIG 645
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
F+SRPQ+GSTFSFT +C++Y D+K+S S+DLP FKGL A++VD KPVRAAVT Y
Sbjct: 646 FISRPQIGSTFSFTLNLLRCEKYAVSDLKKSHSDDLPTSFKGLNAIIVDGKPVRAAVTGY 705
Query: 721 HLNRLGIMVKMSSSIKDASST-AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
HL RLGI +++ SIK A++ +NG S D+ + D+ILVEK+ W+S ED N L D
Sbjct: 706 HLKRLGIRAEVAGSIKKAAAALGRNGSVVSNDR-KLDMILVEKELWLS-EDVDLNLHLPD 763
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
KPNGHV+K+PK+ILLATN++ E +KAKA GFA VIMKPLRASM+AACL+Q++ NK
Sbjct: 764 IKPNGHVYKIPKMILLATNLTNSEDEKAKAVGFA--VIMKPLRASMMAACLKQLIGIGNK 821
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
R+ G+ + NGSS +GLL GKKILVVDDN VNR VAAGALKKFGA VECA S KAAL L
Sbjct: 822 RE-GKDMCNGSSL-RGLLCGKKILVVDDNLVNRRVAAGALKKFGADVECADSGKAALSLL 879
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q PH FDACFMDIQMPEMDGFEATRRIR +E ANEQ +NGG + DG K + H+PILA
Sbjct: 880 QIPHNFDACFMDIQMPEMDGFEATRRIRDLERVANEQ-LNGGLNSDGATKWRKWHMPILA 938
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
MTADVIHAT ++CLKCGMDGYVSKPFEEENLY+ ++KFF+SKP
Sbjct: 939 MTADVIHATLEKCLKCGMDGYVSKPFEEENLYQAVSKFFESKP 981
>gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 1344 bits (3479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/925 (73%), Positives = 741/925 (80%), Gaps = 89/925 (9%)
Query: 81 MLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRV 140
MLQDQF+V+VNHVHAL ILVSTFHY+KNPSA+DQ+TFAEYT RTAFERPLLSGVAYA RV
Sbjct: 1 MLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRV 60
Query: 141 VDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILR 200
++RE+FE+QHG TI TMK E SPIRDEYAPV+F QE +S+++SLDMMSGEEDRENILR
Sbjct: 61 AYSERERFEKQHGWTIKTMKREASPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILR 120
Query: 201 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
ARATGKAVLT PFRLLGSHHLGVVLTFPVYKSKLPP TVE+RI+ATAGY+GG FDVESL
Sbjct: 121 ARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAGYLGGAFDVESL 180
Query: 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMI 320
VENLLGQLAGNQAILVNVYD+TN+SDPL+MYG Q QD DMSLLHES+LDFGD FRKH+MI
Sbjct: 181 VENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLDFGDPFRKHQMI 240
Query: 321 CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV 380
CRYHQK T WT+LTTAF FVIGLLVGYILYGAAIHIVKVEDDFH+MQELKVRAEAADV
Sbjct: 241 CRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADV 300
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ CGKALI LINEVLDR
Sbjct: 301 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALITLINEVLDR 360
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
AKIEA KLELEAV FNLR+ILDDVLSLFSEKSR+KG+ELAVFVSDKVPE V+GDPGRFRQ
Sbjct: 361 AKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPGRFRQ 420
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
IITNLVGNSVKFTERGHIFV+VHLAE T
Sbjct: 421 IITNLVGNSVKFTERGHIFVQVHLAEHT-------------------------------- 448
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
K L+DA+ S SE VTLMV VEDTGIGIPL AQ
Sbjct: 449 --------------KALMDAKAETS-------------SEKVTLMVSVEDTGIGIPLRAQ 481
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM GQI F+SRPQ+GSTFSFTA FG+
Sbjct: 482 GRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFGR- 540
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
D +PVRA VT+YHL RLGI+V++++SIK A +
Sbjct: 541 ---------------------------FDGRPVRAIVTKYHLKRLGILVEVANSIKKAVA 573
Query: 741 -TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
T KNG +S QPD+ILVEKD WIS ED+ N +LLDWK N H KLPK+ILLATNI
Sbjct: 574 ITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQNRHTLKLPKMILLATNI 633
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRG 859
S E DKAKA GFADTVIMKPLRASM+AACLQQVL KRQ G+ + NGS+F Q LL G
Sbjct: 634 SSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQGKDMLNGSAFLQSLLCG 693
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKILVVDDN VNR VAAGALKKFGA VECA S KAAL LQ PH FDACFMDIQMPEMDG
Sbjct: 694 KKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMDIQMPEMDG 753
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
FEATRRIR +ESKANEQ MNGG + +G A + E H+PILAMTADVIHAT+D+CLKCGMDG
Sbjct: 754 FEATRRIRLIESKANEQ-MNGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLKCGMDG 812
Query: 980 YVSKPFEEENLYRELAKFFKSKPLS 1004
YVSKPFEEENLY+ +AKFFKSKP+S
Sbjct: 813 YVSKPFEEENLYQAVAKFFKSKPIS 837
>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
Length = 974
Score = 1300 bits (3365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/1001 (66%), Positives = 774/1001 (77%), Gaps = 45/1001 (4%)
Query: 1 MGLKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMD 60
MG++ R+ + H +ALKVNEQ+GTK Y+ ++A P+ L WIM M F+S +Y MD
Sbjct: 1 MGVQKRQGY-HMLALKVNEQLGTKKKYSL--GHKASNPRILGFWIMFMLFVSSCVYENMD 57
Query: 61 EENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEY 120
EE K +RKEVL SMC+QRARMLQDQF+V++NHVHAL ILVSTFH++KNPSA+DQ+TFAEY
Sbjct: 58 EEQKEKRKEVLVSMCEQRARMLQDQFSVSINHVHALAILVSTFHFYKNPSAIDQETFAEY 117
Query: 121 TTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPM 180
T RTAFERPLLSGVAYA R++ ++RE+FERQHG TI TM+ EPSP+RDEYAPV+F QE +
Sbjct: 118 TARTAFERPLLSGVAYAQRILFSEREEFERQHGWTIRTMEKEPSPVRDEYAPVIFLQETV 177
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
S++ SLD+MSGEEDRENILRARATGKAVLT PFRLL SH LGVVLTFPVYKSKLP TV
Sbjct: 178 SYIGSLDVMSGEEDRENILRARATGKAVLTSPFRLLNSH-LGVVLTFPVYKSKLPLNPTV 236
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERI+ATAGY+GGPFDVESL+ENLLGQLAGNQAI+VNVYD TN+SD LIMYG Q GDM
Sbjct: 237 EERIEATAGYLGGPFDVESLIENLLGQLAGNQAIVVNVYDATNSSDLLIMYGHHLQHGDM 296
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
SL H S+LDFGD FRKH+M+CRY Q+A T W AL TA +F+IG L+GY+ Y A HIVK
Sbjct: 297 SLKHVSKLDFGDPFRKHEMVCRYLQEAPTSWHALQTAALVFMIGFLIGYMAYSAVSHIVK 356
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VEDDF+KMQELKV+AEAADVAKSQFLATVSHEIRTPMNGILGML LLLDT+LSSTQRD+A
Sbjct: 357 VEDDFNKMQELKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLQLLLDTELSSTQRDFA 416
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTAQ CG+ALI LINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFSEKSR KGIELA
Sbjct: 417 QTAQGCGEALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGIELA 476
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
VFVSDKVPE V+GDPGRFRQ+I NLVGNSVKFTE GHIFV+VHL ++ DAK E L
Sbjct: 477 VFVSDKVPEIVVGDPGRFRQVIINLVGNSVKFTEEGHIFVQVHLTAQSKPTKDAKLENLS 536
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
NG E +S + FNTLSG +AAD R+SW+ +HL + + ++ N +N SE
Sbjct: 537 NGEA-EATPKSYSRSFNTLSGKQAADNRSSWEILRHLDEKLLYNPSSKAEN--DNNPKSE 593
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
V+L VCVEDTGIGIP AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM G++S
Sbjct: 594 SVSLTVCVEDTGIGIPEQAQKRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGRMS 653
Query: 661 FVSRPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
F+S PQVGSTFSFT F C + V + ++ S++L KGL+AVVVD PVRAAVT+
Sbjct: 654 FISLPQVGSTFSFTVEFQSCERNEVNNCVSKTISDELNVALKGLRAVVVDGNPVRAAVTK 713
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
YHL RLGI + SI GL S+ K DI LVEKD WISGE+ +
Sbjct: 714 YHLRRLGIQAEAIGSI-------HAGLISNSGKV-ADIFLVEKDAWISGEE--------E 757
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
P PK+ILLATNI+ E ++AKA GFA+TV+MKPLR+ M+AACLQQVL + K
Sbjct: 758 EMPTNR----PKMILLATNITPSESERAKAAGFAETVVMKPLRSRMVAACLQQVLGIDQK 813
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
Q GR G LL GKKILVVDDN VNR VAAGAL KFGA V+CA S AL L
Sbjct: 814 TQNGRSSGLGR-----LLSGKKILVVDDNVVNRRVAAGALNKFGAEVKCAESGHEALAFL 868
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q PH FDACFMDIQMPEMDGFEATR IR++E KA + K E H+PILA
Sbjct: 869 QIPHDFDACFMDIQMPEMDGFEATRLIREVEMKAKME------------KNVEWHMPILA 916
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
MTADVIHAT DECLKCGMDGYVSKPF+E+ LY+ +AKFF S
Sbjct: 917 MTADVIHATLDECLKCGMDGYVSKPFQEKTLYQAVAKFFSS 957
>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
Length = 984
Score = 1290 bits (3337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/1000 (67%), Positives = 775/1000 (77%), Gaps = 25/1000 (2%)
Query: 6 RKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKI 65
++ H +AL+VNEQ+G K Y+F+ ++A P+ L WIM M F S +Y MDEE K
Sbjct: 4 KRQGYHMLALRVNEQLGIKKKYSFV--HKASDPRILGFWIMAMLFASSCVYEYMDEEQKE 61
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
+RKEVL SMC+QRARMLQDQF+V+VNHVHAL ILVSTFH+ KNPSA+DQ+TFAEYT RTA
Sbjct: 62 KRKEVLVSMCEQRARMLQDQFSVSVNHVHALAILVSTFHFDKNPSAIDQETFAEYTARTA 121
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKS 185
FERPLLSGVAYA R++ ++RE+FERQHG TI TM+ +PSP+RDEYAPV+F QE +S++ S
Sbjct: 122 FERPLLSGVAYAQRILLSEREEFERQHGWTIRTMEKKPSPVRDEYAPVIFSQETLSYLGS 181
Query: 186 LDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIK 245
LD+MSG+EDRENILRARATGKAVLT PFRLL SH LGVVLTFPVYK KLPP TVEERI
Sbjct: 182 LDVMSGQEDRENILRARATGKAVLTNPFRLLNSH-LGVVLTFPVYKFKLPPNPTVEERID 240
Query: 246 ATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHE 305
ATAGY+GG FDVESLVENLLGQLAGNQAI+VNVYD TN+SDPLIMYG +QDGDMSL H
Sbjct: 241 ATAGYLGGAFDVESLVENLLGQLAGNQAIVVNVYDTTNSSDPLIMYGHNSQDGDMSLKHV 300
Query: 306 SELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDF 365
S+LDFGD FRKH+MICRY +A T W AL TA +F+IG L+GY+ Y A HIVKVEDDF
Sbjct: 301 SKLDFGDPFRKHEMICRYLMEAPTSWHALQTAALVFMIGFLIGYMAYSAVSHIVKVEDDF 360
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+KMQELKV+AEAADVAKSQFLATVSHEIRTPMNGILGML LLLDT+LSSTQRD+AQTAQ
Sbjct: 361 NKMQELKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLQLLLDTELSSTQRDFAQTAQG 420
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
CG+ALI LINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFSEKSR KGIELAVFVSD
Sbjct: 421 CGEALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSD 480
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
KVPE V+GDPGRFRQ+I NLVGNSVKFTE GHIFV+VHLAE+ DAK ET NG +E
Sbjct: 481 KVPEIVVGDPGRFRQVIINLVGNSVKFTEEGHIFVQVHLAEQRKPTKDAKIETYSNGDSE 540
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
+S + FNTLSG + AD +S D+ + L D ++N N SE V L
Sbjct: 541 T-TPKSQSWSFNTLSGKQVADNCSSLDE-EFLYDPTRDENN---------NAKSESVRLT 589
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V VEDTGIGIP AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM GQ+SF SRP
Sbjct: 590 VSVEDTGIGIPEQAQKRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQMSFNSRP 649
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
QVGST SFT F + + + +S S+++ KGL+AVV+D KPVRAAVT YHL RL
Sbjct: 650 QVGSTSSFTVEFQRSERSEVICLSKSISDEVNVALKGLRAVVIDGKPVRAAVTMYHLRRL 709
Query: 726 GIMVKMSSSIK-DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
GI + SI+ + AK+G S D+ PD+ +VEKD WIS E+ Q L + NG
Sbjct: 710 GIQSEAVGSIRIGLAFYAKHG--SLNDEKVPDMFIVEKDAWISSEEEDGPMQ-LSSRQNG 766
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ--A 842
KLPK+ILLATNI+ E +++K GFADTVIMKPLR+SM+AACLQQVL +K Q +
Sbjct: 767 FNCKLPKMILLATNITPTESNRSKTAGFADTVIMKPLRSSMVAACLQQVLGIGHKIQNSS 826
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
R + +GLLRGKKILVVDDN VNR VAAGAL KFGA V C S AL LQ P
Sbjct: 827 PRNGAIAKAKAKGLLRGKKILVVDDNVVNRRVAAGALNKFGAEVRCVGSGHEALACLQIP 886
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H FDACFMDIQMP+MDGFEATR IR+MESKA M + DG + H+PILAMTA
Sbjct: 887 HDFDACFMDIQMPQMDGFEATRLIREMESKAK---MGNNNKSDGIG--EWRHMPILAMTA 941
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
DVIHAT DECLKCGMDGYV KPF+E++LY+ +AKFF S P
Sbjct: 942 DVIHATLDECLKCGMDGYVPKPFKEKSLYQAVAKFFDSNP 981
>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 997
Score = 1152 bits (2979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/940 (63%), Positives = 707/940 (75%), Gaps = 21/940 (2%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
+ +E + MC++RARMLQDQF V+VNHVHAL ILV+TFHY K P ALDQDTFA+YT RT+
Sbjct: 66 KAEEGIVCMCEERARMLQDQFAVSVNHVHALAILVATFHYEKQPPALDQDTFADYTARTS 125
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKS 185
FERPLLSGVAYA RV++A RE FERQ G I TMK EPSP++DEYAPV++ QE +S+++
Sbjct: 126 FERPLLSGVAYAQRVMNADRESFERQQGWIIKTMKHEPSPVQDEYAPVIYSQETVSYIEG 185
Query: 186 LDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIK 245
LDMMSGEEDRENILR+RATGKAVLTRPFRL+ S+HLGVVLTFPVY LPP + VE+R+
Sbjct: 186 LDMMSGEEDRENILRSRATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPPDAKVEDRVA 244
Query: 246 ATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHE 305
ATAGY+GG FDVESLVENLL QLAGNQ ++VNVYD+TN S+PL+MYG + G S H
Sbjct: 245 ATAGYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVPLGAPSPSHI 304
Query: 306 SELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDF 365
LDFGD FRKH MICRY K PW+A+TT +FVI +LVGYI+Y A H V++D
Sbjct: 305 CMLDFGDPFRKHHMICRYRNKHHVPWSAITTPSGVFVICMLVGYIIYAAWTHYDNVKEDC 364
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
KM+ LK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +LLDT+L STQRDYAQTAQ+
Sbjct: 365 RKMEALKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQV 424
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
CGKALI+LINEVLDRAKIEARKLELE+V F+LR+ILDDV+SLFS KS KGIELAV+VS+
Sbjct: 425 CGKALISLINEVLDRAKIEARKLELESVPFDLRSILDDVVSLFSSKSSEKGIELAVYVSE 484
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL---LNG 542
+VPE +LGDPGRFRQIITNLVGNS+KFTERGHIFV+VHLA+ + + T+AK E + +NG
Sbjct: 485 RVPELLLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKVEPVVNGING 544
Query: 543 GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
+E S + NTLSG EAAD RNSW+ FK L+ E N M S+ V
Sbjct: 545 HKDETSTISSSVSHNTLSGFEAADSRNSWENFKLLLSYE--------TNEMPYGSESDKV 596
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TL+V VEDTGIGIP+ AQ+RVF PFMQADSSTSR+YGGTGIGLSIS+CLVELM GQI+FV
Sbjct: 597 TLVVSVEDTGIGIPIHAQDRVFTPFMQADSSTSRNYGGTGIGLSISQCLVELMGGQINFV 656
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
SRPQVGSTF+FTAV +C+ K + LP FKGL +++VD++PVRA VT+YHL
Sbjct: 657 SRPQVGSTFTFTAVLQRCERNAISVSKSALLHPLPSSFKGLSSLLVDKRPVRATVTKYHL 716
Query: 723 NRLGIMVKMSSSIKDA--SSTAKNG-LTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
RLGI K +I+ A + + +NG L +S + Q ++L+E D W D + +LL+
Sbjct: 717 QRLGIASKSVGTIELALGALSGRNGSLLTSMPRKQISMLLIESDSWGLKMDVPLHTRLLE 776
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
K NG P +ILLA+ E DK KA D+VI KPL+AS +AACL Q L +
Sbjct: 777 MKQNGSETVFPPVILLASA----ESDKMKAKYAVDSVITKPLKASTLAACLFQALGI-SI 831
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
QA R + SS GLL GK ILVVDDN VN VAAG LKK+GA VEC S K AL L
Sbjct: 832 TQAHREKHHDSSPLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALALL 891
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG-GSSVDGTAKRDELHLPIL 958
Q PH FD C MDIQMPEMDGFEATR+IR ME+KA++Q + S D TAKR E HLP+L
Sbjct: 892 QVPHKFDLCLMDIQMPEMDGFEATRQIRAMEAKAHDQEDDAYNSEADSTAKRAEWHLPVL 951
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
AMTADVI AT +EC K GMDGYVSKPFEE+ L++ + KF
Sbjct: 952 AMTADVIQATHEECTKFGMDGYVSKPFEEKQLFQAVEKFL 991
>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
Length = 996
Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/965 (61%), Positives = 711/965 (73%), Gaps = 23/965 (2%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A++LW++ A I + ++ + + +E L SMC++RARMLQDQF V+VNHVHAL IL
Sbjct: 43 AVLLWMLVAATIGVFLHWSIRHAALRKEEEGLVSMCEERARMLQDQFAVSVNHVHALAIL 102
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V+TFHY K+P ALDQDTFAEYT RT+FERPLLSGVAYA RV A RE FERQ G I TM
Sbjct: 103 VATFHYEKHPPALDQDTFAEYTARTSFERPLLSGVAYAQRVEHADREGFERQQGWIIKTM 162
Query: 160 KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH 219
K EPSP++DEYAPV++ QE +S+++ LDMMSGEEDRENILR+RA+GKAVLTRPFRL+ S+
Sbjct: 163 KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SN 221
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
HLGVVLTFPVY LPP + EER+ ATAGY+GG FDVESLVENLL QLAGNQ ++VNVY
Sbjct: 222 HLGVVLTFPVYHVDLPPDAKEEERVAATAGYLGGSFDVESLVENLLRQLAGNQELVVNVY 281
Query: 280 DMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFF 339
D+TN+SDPL+MYG + G S H LDFGD FRKH M+CRY K PW+A++T
Sbjct: 282 DVTNSSDPLVMYGSEVPLGIPSPWHICMLDFGDPFRKHHMVCRYRNKPPLPWSAISTPSG 341
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
+FVI +LVGYI++ A V++D KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG
Sbjct: 342 VFVICMLVGYIVFAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNG 401
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +LLDTDL+STQRD+AQTAQ+CGKALI+LINEVLDRAKIEA KL+LE+V F+LR+
Sbjct: 402 VLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLESVPFDLRS 461
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
ILDDV++LFS KSR KGIELAV+VS++VPE +LGDPGRFRQIITNLVGNS+KFTERGHIF
Sbjct: 462 ILDDVIALFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIITNLVGNSIKFTERGHIF 521
Query: 520 VKVHLAERTMVKTDAKDETLLNG--GTEEGVCRSGTG-QFNTLSGLEAADGRNSWDKFKH 576
V+VHLA+ + + T+++ E + NG G ++ TG NTLSG EAAD RNSW+ FK
Sbjct: 522 VQVHLADHSNLATESEVEPVANGMNGHKDEKTAVATGVSLNTLSGFEAADSRNSWENFKL 581
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L+ E N M S+ VTL+V VEDTGIGIPL AQ +VF PFMQADSSTSR
Sbjct: 582 LLSYEK--------NEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSR 633
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
YGGTGIGLSIS+CLVELM GQI+FVSRPQVGSTF+FTAV +C D K L
Sbjct: 634 TYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTFTAVLQRCDRSAIGDSKPVMLHPL 693
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLTSSEDKFQ 754
P FKGL A++VD +PVRA VT+YHL RLGI + ++I A + +NG + + K Q
Sbjct: 694 PSSFKGLSALLVDTRPVRATVTKYHLQRLGIACDVVATIDLALGVLSGRNGSSLTSTK-Q 752
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
P ++L+E D W D ++LL+ K +GH LPK+ILLA E K KA D
Sbjct: 753 PCMLLIESDSWGFKIDVSLRSRLLEMKQDGHTNLLPKIILLAAA----ESSKLKAHYAVD 808
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
+VI KPL+AS +AACL Q L R N S H GLL GK ILVVDDN VN V
Sbjct: 809 SVITKPLKASALAACLFQTLGITQSSNERRD--NSGSLH-GLLLGKNILVVDDNKVNLRV 865
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AAG LKKFGA VEC S K AL LQ P+ F C MDIQMPEMDGFEAT++IR ME+KAN
Sbjct: 866 AAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQMPEMDGFEATQQIRTMEAKAN 925
Query: 935 EQMMN-GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
EQ + S DG + + HLP+LAMTADVI AT +EC K GMDGYV+KPFEE+ L++
Sbjct: 926 EQAVACDDSETDGATRAAKWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQA 985
Query: 994 LAKFF 998
L KF
Sbjct: 986 LQKFL 990
>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
Length = 756
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/758 (74%), Positives = 641/758 (84%), Gaps = 7/758 (0%)
Query: 250 YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELD 309
Y+GG FDVESLVENLLGQLAGNQAILVNVYD+TN SDPL+MYG Q +DGDMSL HES+LD
Sbjct: 1 YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLD 60
Query: 310 FGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ 369
FGD FRKH+MICRYHQKA T WTALTTAF FVIGLLVGYILYGAA HIVKVEDDFH+MQ
Sbjct: 61 FGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 120
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
ELKVRAEAAD+AKSQFLATVSHEIRTPMNGILGMLALLLDT+LSSTQRDYAQTAQ CGKA
Sbjct: 121 ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKA 180
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
LIALINEVLDRAKIEA KLELEAV F+LR ILDDVLSLFSEKSR+KG+ELAVFVSDKVPE
Sbjct: 181 LIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPE 240
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GDPGRFRQ+ITNLVGNSVKFTE GHIFVKV LAE++MV T+ K ET +NG +E+G
Sbjct: 241 IVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDGAS 300
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
+ QF TLSG EAAD +NSWD FKHL + E FQ N S N+MA+N S+ VT+M+ VE
Sbjct: 301 HN-KHQFETLSGFEAADNQNSWDTFKHLANEE-FQPNGS-SNLMATNEISDIVTVMISVE 357
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTGIGIPLSAQ RVFM FMQADSSTSR+YGGTGIGL ISKCLVELM GQI+FVS+PQVGS
Sbjct: 358 DTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGS 417
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TFSFTAVFG+C++ +IK+S E+LP F+GLKAVVVD KPVRAAVT+YHL RLGI+V
Sbjct: 418 TFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILV 477
Query: 730 KMSSSIKDASST-AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL--LDWKPNGHV 786
+++SS+K A++ KNG S + QPD+IL+EKD +IS E+ G + L LDWK NGH
Sbjct: 478 EVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHT 537
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
KLPKLILLAT +S E DKAK GF+DT+IMKPLRASMI ACLQQVL + KRQ G+ +
Sbjct: 538 LKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDM 597
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
NGS+F +GLL GKKILVVDDN VNR VAAGALKKFGA VEC S KAAL LQ PH FD
Sbjct: 598 ANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFD 657
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
ACFMDIQMPEMDGFEATRRIR MESK NE ++ + + A++DE H+PILAMTADVIH
Sbjct: 658 ACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKE-NARKDEWHVPILAMTADVIH 716
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
AT+DECLKCGMDGYVSKPFEEENLY+ +AKFF +KP++
Sbjct: 717 ATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPIT 754
>gi|118790698|tpd|FAA00250.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|222625684|gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group]
Length = 1005
Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/972 (60%), Positives = 707/972 (72%), Gaps = 27/972 (2%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A+V W++ A + ++ + +E L MC++RARMLQDQF V+VNHVHAL IL
Sbjct: 42 AVVAWVLASAALWAGLHWRFRRAALHKAEEALVCMCEERARMLQDQFAVSVNHVHALAIL 101
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V+TFHY K+P ALDQDTFA Y RT+FERPLLSGVAYA RVV A RE FERQ G I TM
Sbjct: 102 VATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKTM 161
Query: 160 KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH 219
K EPSP +DEYAPV++ QE +S+++ LD+MSGEEDRENILRARATGKAVLTRPFRL+ S+
Sbjct: 162 KHEPSPAQDEYAPVIYSQETISYIEGLDVMSGEEDRENILRARATGKAVLTRPFRLM-SN 220
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
HLGVVLTFPVY LP + VE+R+ ATAGY+GG FDVESLVENLL QLAGNQ ++VNVY
Sbjct: 221 HLGVVLTFPVYLVDLPNDTAVEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELVVNVY 280
Query: 280 DMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFF 339
D+TN S+PL+MYG + G S H LDFGD RKH+M+CRY K W+A+TT
Sbjct: 281 DVTNHSNPLVMYGSEVPLGIPSPSHTYTLDFGDPLRKHQMVCRYRNKLHVSWSAITTPSG 340
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
+FVI +LVGYI+Y A V++D KM+ LK RAEAAD+AKSQFLATVSHEIRTPMNG
Sbjct: 341 VFVICMLVGYIIYAAWSRYDNVKEDCRKMEALKKRAEAADIAKSQFLATVSHEIRTPMNG 400
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +LLDT+L STQRDYAQTAQ+CGKALI+LINEVLDRAKIEA K++LE+V F+LR+
Sbjct: 401 VLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKIEAGKIDLESVPFDLRS 460
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
ILDDV+SLFS KSR KGIELAV+VS++VPE +LGDPGRFRQIITNLVGNS+KFTERGHIF
Sbjct: 461 ILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIITNLVGNSIKFTERGHIF 520
Query: 520 VKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
V+VHLA+ + + T+AK E + +NG +E + +G NTLSG EAAD RN+W+ FK
Sbjct: 521 VQVHLADHSNLATEAKIEPVVNGMNGHKDEAIAIPTSGSHNTLSGFEAADSRNNWENFKL 580
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L+ E N M S+ VTL+V VEDTGIGIPL AQ RVF PFMQADSSTSR
Sbjct: 581 LLSYEK--------NEMPYESDSDKVTLVVSVEDTGIGIPLHAQGRVFTPFMQADSSTSR 632
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
+YGGTGIGLSISKCLVE+M GQI+FVSRP VGSTF+FTAV +C + D K L
Sbjct: 633 NYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTFTAVLRRCDKNAISDSKTVALHPL 692
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLT-SSEDKF 753
P FKGL A++VD++PVRA VT+YHL RLGI ++ +I + +NG + +S K
Sbjct: 693 PSSFKGLSALLVDKRPVRATVTKYHLQRLGITSEVVGTIDPTFGVLSGRNGSSLTSIGKK 752
Query: 754 QPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFA 813
QP ++L+E D W D +A+L + K + + LPK+ LL S E DK K
Sbjct: 753 QPCMLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFLL----SAAESDKVKKIHAV 808
Query: 814 DTVIMKPLRASMIAACLQQVL-----STENKRQAG--RGVPNGSSFHQGLLRGKKILVVD 866
D+VI KPL+AS +AACL Q L S E + +G G S H GLL GK ILVVD
Sbjct: 809 DSVIPKPLKASALAACLFQALGITQPSHEKRDDSGSLHGRDGSGSLH-GLLLGKNILVVD 867
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRI 926
DN VN VAAG LKK+GA VEC S K AL LQ PH FD C MDIQMPEMDGFEATR+I
Sbjct: 868 DNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQI 927
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R ME KANEQ + S + AK + HLPILAMTADVI AT +EC KCGMDGYVSKPFE
Sbjct: 928 RAMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFE 987
Query: 987 EENLYRELAKFF 998
E+ L++ + KF
Sbjct: 988 EKQLFQAVQKFL 999
>gi|162461543|ref|NP_001105913.1| histidine kinase [Zea mays]
gi|89242037|dbj|BAE80689.1| histidine kinase [Zea mays]
Length = 996
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/965 (60%), Positives = 709/965 (73%), Gaps = 23/965 (2%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A+++W++G A + + ++ + +E L SMC++RARMLQDQF V+VNHVHAL IL
Sbjct: 43 AVLVWVLGSAALWVFLHSYFRHAALRKAEEALVSMCEERARMLQDQFAVSVNHVHALAIL 102
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V+TFHY K+P ALDQ+TFA+YT RT+FERPLLSGVAYA RVV A RE FER G I TM
Sbjct: 103 VATFHYEKHPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHADREGFERHQGWIIKTM 162
Query: 160 KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH 219
K EPSP +DEYAPV++ QE +S+++ LDMMSGEEDRENILR+RA+GKAVLTRPFRL+ S+
Sbjct: 163 KHEPSPAQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SN 221
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
HLGVVLTFPVY + LP + E+R+ ATAGY+GG FDVESLVENLL QLAGNQ +++NVY
Sbjct: 222 HLGVVLTFPVYHADLPSDAKEEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELVINVY 281
Query: 280 DMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFF 339
D+TN S+PL+MYG + G+ S H LDFGD FRKH M+CRY K PW+A++T
Sbjct: 282 DVTNISNPLVMYGSEVPLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPHVPWSAISTPSG 341
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
+FVI +LVGYI A V++D KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG
Sbjct: 342 VFVICMLVGYIAGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNG 401
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +LLDTDL+STQRD+AQTAQ+CGKALI+LINEVLDRAKIEARKL+LE+V F+LR+
Sbjct: 402 VLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEARKLDLESVPFDLRS 461
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
ILDDV+SLFS KSR KGIEL V+VS++VPE +LGDPGRFRQIITNLVGNS+KFTERGHIF
Sbjct: 462 ILDDVISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQIITNLVGNSIKFTERGHIF 521
Query: 520 VKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
V+VHLA+ + + T++K E + +NG T E + + NTLSG EAAD RNSW+ FK
Sbjct: 522 VQVHLADHSNLATESKVEPVANGMNGHTNEKTAVATSVSLNTLSGFEAADSRNSWENFKL 581
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L+ E + M S+ VTL+V VEDTGIGIPL AQ +VF PFMQADSSTSR
Sbjct: 582 LLSYEKSE--------MPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSR 633
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
YGGTGIGLSISKCLVELM GQI+FVSRP VGSTF+FTAV +C D K L
Sbjct: 634 TYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAVLKRCDRSAIGDSKPVMLHPL 693
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLTSSEDKFQ 754
P FKGL A++VD +PVRA VT+YHL RLGI + ++I+ A + +NG + + K Q
Sbjct: 694 PSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSMK-Q 752
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
P ++L+E D W D ++LL+ K NGH LPK+ILLA E K K D
Sbjct: 753 PCMLLIESDSWGFNIDVSLQSRLLEMKQNGHTHVLPKIILLAAA----ESGKLKEHYAVD 808
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
+VI KPL+AS +AACL Q L K+ + N S + GLL GK ILVVDDN VN V
Sbjct: 809 SVITKPLKASALAACLFQTLGI--KQSSNERSDNSGSLY-GLLLGKNILVVDDNKVNLRV 865
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AAG LKKFGA VEC S K AL L P+ F C MDIQMPEMDGFEAT++IR ME+KAN
Sbjct: 866 AAGTLKKFGAKVECVESGKDALALLHVPYKFHLCLMDIQMPEMDGFEATKQIRAMEAKAN 925
Query: 935 EQMMN-GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
EQ + S +DGT + LP+LAMTADVI AT +EC KCGMDGYV+KPFEE+ L++
Sbjct: 926 EQAVACDDSEIDGTTRAARWRLPVLAMTADVIQATHEECTKCGMDGYVTKPFEEKQLFQA 985
Query: 994 LAKFF 998
L KF
Sbjct: 986 LQKFL 990
>gi|108710768|gb|ABF98563.1| cytokinin receptor CRE1b, putative, expressed [Oryza sativa Japonica
Group]
Length = 1013
Score = 1129 bits (2920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/980 (60%), Positives = 707/980 (72%), Gaps = 35/980 (3%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A+V W++ A + ++ + +E L MC++RARMLQDQF V+VNHVHAL IL
Sbjct: 42 AVVAWVLASAALWAGLHWRFRRAALHKAEEALVCMCEERARMLQDQFAVSVNHVHALAIL 101
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V+TFHY K+P ALDQDTFA Y RT+FERPLLSGVAYA RVV A RE FERQ G I TM
Sbjct: 102 VATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKTM 161
Query: 160 KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH 219
K EPSP +DEYAPV++ QE +S+++ LD+MSGEEDRENILRARATGKAVLTRPFRL+ S+
Sbjct: 162 KHEPSPAQDEYAPVIYSQETISYIEGLDVMSGEEDRENILRARATGKAVLTRPFRLM-SN 220
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
HLGVVLTFPVY LP + VE+R+ ATAGY+GG FDVESLVENLL QLAGNQ ++VNVY
Sbjct: 221 HLGVVLTFPVYLVDLPNDTAVEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELVVNVY 280
Query: 280 DMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFF 339
D+TN S+PL+MYG + G S H LDFGD RKH+M+CRY K W+A+TT
Sbjct: 281 DVTNHSNPLVMYGSEVPLGIPSPSHTYTLDFGDPLRKHQMVCRYRNKLHVSWSAITTPSG 340
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
+FVI +LVGYI+Y A V++D KM+ LK RAEAAD+AKSQFLATVSHEIRTPMNG
Sbjct: 341 VFVICMLVGYIIYAAWSRYDNVKEDCRKMEALKKRAEAADIAKSQFLATVSHEIRTPMNG 400
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +LLDT+L STQRDYAQTAQ+CGKALI+LINEVLDRAKIEA K++LE+V F+LR+
Sbjct: 401 VLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKIEAGKIDLESVPFDLRS 460
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK-------- 511
ILDDV+SLFS KSR KGIELAV+VS++VPE +LGDPGRFRQIITNLVGNS+K
Sbjct: 461 ILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIITNLVGNSIKITIFTLSQ 520
Query: 512 FTERGHIFVKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFNTLSGLEAADGR 568
FTERGHIFV+VHLA+ + + T+AK E + +NG +E + +G NTLSG EAAD R
Sbjct: 521 FTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDEAIAIPTSGSHNTLSGFEAADSR 580
Query: 569 NSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
N+W+ FK L+ E N M S+ VTL+V VEDTGIGIPL AQ RVF PFM
Sbjct: 581 NNWENFKLLLSYEK--------NEMPYESDSDKVTLVVSVEDTGIGIPLHAQGRVFTPFM 632
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
QADSSTSR+YGGTGIGLSISKCLVE+M GQI+FVSRP VGSTF+FTAV +C + D
Sbjct: 633 QADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTFTAVLRRCDKNAISDS 692
Query: 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGL 746
K LP FKGL A++VD++PVRA VT+YHL RLGI ++ +I + +NG
Sbjct: 693 KTVALHPLPSSFKGLSALLVDKRPVRATVTKYHLQRLGITSEVVGTIDPTFGVLSGRNGS 752
Query: 747 T-SSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECD 805
+ +S K QP ++L+E D W D +A+L + K + + LPK+ LL S E D
Sbjct: 753 SLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFLL----SAAESD 808
Query: 806 KAKAGGFADTVIMKPLRASMIAACLQQVL-----STENKRQAG--RGVPNGSSFHQGLLR 858
K K D+VI KPL+AS +AACL Q L S E + +G G S H GLL
Sbjct: 809 KVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKRDDSGSLHGRDGSGSLH-GLLL 867
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
GK ILVVDDN VN VAAG LKK+GA VEC S K AL LQ PH FD C MDIQMPEMD
Sbjct: 868 GKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMD 927
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
GFEATR+IR ME KANEQ + S + AK + HLPILAMTADVI AT +EC KCGMD
Sbjct: 928 GFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMD 987
Query: 979 GYVSKPFEEENLYRELAKFF 998
GYVSKPFEE+ L++ + KF
Sbjct: 988 GYVSKPFEEKQLFQAVQKFL 1007
>gi|162458745|ref|NP_001105858.1| LOC732762 [Zea mays]
gi|89242033|dbj|BAE80687.1| histidine kinase [Zea mays]
Length = 995
Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/965 (60%), Positives = 705/965 (73%), Gaps = 24/965 (2%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A++LW++G A + + ++ + +E L SMC++RARMLQDQF V+VNHVHAL IL
Sbjct: 43 AVLLWVLGAAALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAIL 102
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V+TFHY K P ALDQ+TFA+YT RT+FERPLLSGVAYA RVV RE FERQ G I TM
Sbjct: 103 VATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTM 162
Query: 160 KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH 219
K EPSP++DEYAPV++ QE +S+++ LDMMSGEEDRENILR+RA+GKAVLTRPFRL+ S+
Sbjct: 163 KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SN 221
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
HLGVVLTFPVY L + E+R+ ATAGY+GG FDVESLVENLL QLAGNQ ++VNVY
Sbjct: 222 HLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAGNQELVVNVY 281
Query: 280 DMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFF 339
D+TN+S+PL+MYG + G+ S H LDFGD FRKH M+CRY K PW+A++++
Sbjct: 282 DVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPQLPWSAISSSSG 341
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
+FVI +LVGYI+ A V++D KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG
Sbjct: 342 VFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNG 401
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +LLDTDL+STQRD+AQTAQ+CGKALI+LINEVLDRAKIEA KL+LE+V F+LR+
Sbjct: 402 VLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLESVPFDLRS 461
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
ILDDV+SLFS KSR KGIELAV+VS++VPE +LGDPGRFRQIITNLVGNS+KFTERGHIF
Sbjct: 462 ILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTERGHIF 521
Query: 520 VKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
V+VHLA+ + + T+ K E++ +NG +E + + NTLSG EAAD RNSW+ FK
Sbjct: 522 VQVHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADSRNSWENFKL 581
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L+ E N M S+ VTL+V VEDTGIGIPL AQ +VF PFMQADSSTSR
Sbjct: 582 LLSYEK--------NEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSR 633
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
YGGTGIGLSISKCLVELM GQI+FVSRP VGSTF+FTA +C D K L
Sbjct: 634 TYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQRCDRSAIGDSKPVMLHPL 693
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLTSSEDKFQ 754
P FKGL A++VD +PVRA VT+YHL RLGI + ++I+ A + +NG + + K Q
Sbjct: 694 PSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSTK-Q 752
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
P ++L+E D W D ++LL+ K NG LPK ILLA E K KA D
Sbjct: 753 PCMLLIESDSWGFKIDVPLRSRLLEMKQNGPP-GLPKTILLAAA----ESGKLKAHYAVD 807
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
+VI KPL+AS +AACL Q L R N S H GLL GK ILVVDDN VN V
Sbjct: 808 SVITKPLKASGLAACLFQTLGITQSSNERRD--NSGSLH-GLLLGKNILVVDDNKVNLRV 864
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AAG LKKFGA VEC S K AL LQ PH F C MDIQMPEMDGFEAT++IR ME+KAN
Sbjct: 865 AAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFEATKQIRAMEAKAN 924
Query: 935 EQMMN-GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
EQ + S DG + HLP+LAMTADVI AT +EC K GMDGYV+KPFEE+ L++
Sbjct: 925 EQAVACDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQA 984
Query: 994 LAKFF 998
L KF
Sbjct: 985 LQKFL 989
>gi|89242035|dbj|BAE80688.1| histidine kinase [Zea mays]
Length = 995
Score = 1123 bits (2904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/965 (60%), Positives = 705/965 (73%), Gaps = 24/965 (2%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A+++W++G + + ++ + +E L SMC++RARMLQDQF V+VNHVHAL IL
Sbjct: 43 AVLVWVLGALALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAIL 102
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V+TFHY K P ALDQ+TFA+YT RT+FERPLLSGVAYA RVV RE FERQ G I TM
Sbjct: 103 VATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTM 162
Query: 160 KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH 219
K EPSP++DEYAPV++ QE +S+++ LDMMSGEEDRENILR+RA+GKAVLTRPFRL+ S+
Sbjct: 163 KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SN 221
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
HLGVVLTFPVY L + E+R+ ATAGY+GG FDVESLVENLL QLAGNQ ++VNVY
Sbjct: 222 HLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAGNQELVVNVY 281
Query: 280 DMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFF 339
D+TN+S+PL+MYG + G+ S H LDFGD FRKH M+CRY K PW+A++++
Sbjct: 282 DVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPQLPWSAISSSSG 341
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
+FVI +LVGYI+ A V++D KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG
Sbjct: 342 VFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNG 401
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +LLDTDL+STQRD+AQTAQ+CGKALI+LINEVLDRAKIEA KL+LE+V F+LR+
Sbjct: 402 VLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLESVPFDLRS 461
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
ILDDV+SLFS KSR KGIELAV+VS++VPE +LGDPGRFRQIITNLVGNS+KFTERGHIF
Sbjct: 462 ILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTERGHIF 521
Query: 520 VKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
V+VHLA+ + + T++K E++ +NG +E + + NTLSG EAAD RNSW+ FK
Sbjct: 522 VQVHLADHSNLATESKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADSRNSWENFKL 581
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L+ E N M S+ VTL+V VEDTGIGIPL AQ +VF PFMQADSSTSR
Sbjct: 582 LLSYEK--------NEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSR 633
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
YGGTGIGLSISKCLVELM GQI+FVSRP VGSTF+FTA +C D K L
Sbjct: 634 TYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQRCDRSAIGDSKPVMLHPL 693
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLTSSEDKFQ 754
P FKGL A++VD +PVRA VT+YHL RLGI + ++I+ A + +NG + + K Q
Sbjct: 694 PSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSTK-Q 752
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
P ++L+E D W D ++LL+ K NG LPK ILLA E K KA D
Sbjct: 753 PCMLLIESDSWGFKIDVPLRSRLLEMKQNGPP-GLPKTILLAAA----ESGKLKAHYAVD 807
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
+VI KPL+AS +AACL Q L R N S H GLL GK ILVVDDN VN V
Sbjct: 808 SVITKPLKASGLAACLFQTLGITQSSNERRD--NSGSLH-GLLLGKNILVVDDNKVNLRV 864
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AAG LKKFGA VEC S K AL LQ PH F C MDIQMPEMDGFEAT++IR ME+KAN
Sbjct: 865 AAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFEATKQIRAMEAKAN 924
Query: 935 EQMMN-GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
EQ + S DG + HLP+LAMTADVI AT +EC K GMDGYV+KPFEE+ L++
Sbjct: 925 EQAVACDDSDTDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQA 984
Query: 994 LAKFF 998
L KF
Sbjct: 985 LQKFL 989
>gi|414872484|tpg|DAA51041.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 997
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/965 (60%), Positives = 704/965 (72%), Gaps = 24/965 (2%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A+++W++G + + ++ + +E L SMC++RARMLQDQF V+VNHVHAL IL
Sbjct: 45 AVLVWVLGALALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAIL 104
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V+TFHY K P ALDQ+TFA+YT RT+FERPLLSGVAYA RVV RE FERQ G I TM
Sbjct: 105 VATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTM 164
Query: 160 KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH 219
K EPSP++DEYAPV++ QE +S+++ LDMMSGEEDRENILR+RA+GKAVLTRPFRL+ S+
Sbjct: 165 KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SN 223
Query: 220 HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVY 279
HLGVVLTFPVY L + E+R+ ATAGY+GG FDVESLVENLL QLAGNQ ++VNVY
Sbjct: 224 HLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAGNQELVVNVY 283
Query: 280 DMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFF 339
D+TN+S+PL+MYG + G+ S H LDFGD FRKH M+CRY K PW+A++++
Sbjct: 284 DVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPQLPWSAISSSSG 343
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
+FVI +LVGYI+ A V++D KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG
Sbjct: 344 VFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNG 403
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +LLDTDL+STQRD+AQTAQ+CGKALI+LINEVLDRAKIEA KL+LE+V F+LR+
Sbjct: 404 VLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLESVPFDLRS 463
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
ILDDV+SLFS KSR KGIELAV+VS++VPE +LGDPGRFRQIITNLVGNS+KFTERGHIF
Sbjct: 464 ILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTERGHIF 523
Query: 520 VKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
V+VHLA+ + + T+ K E++ +NG +E + + NTLSG EAAD RNSW+ FK
Sbjct: 524 VQVHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADSRNSWENFKL 583
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L+ E N M S+ VTL+V VEDTGIGIPL AQ +VF PFMQADSSTSR
Sbjct: 584 LLSYEK--------NEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSR 635
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
YGGTGIGLSISKCLVELM GQI+FVSRP VGSTF+FTA +C D K L
Sbjct: 636 TYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQRCDRSAIGDSKPVMLHPL 695
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLTSSEDKFQ 754
P FKGL A++VD +PVRA VT+YHL RLGI + ++I+ A + +NG + + K Q
Sbjct: 696 PSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSTK-Q 754
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
P ++L+E D W D ++LL+ K NG LPK ILLA E K KA D
Sbjct: 755 PCMLLIESDSWGFKIDVPLRSRLLEMKQNGPP-GLPKTILLAAA----ESGKLKAHYAVD 809
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
+VI KPL+AS +AACL Q L R N S H GLL GK ILVVDDN VN V
Sbjct: 810 SVITKPLKASGLAACLFQTLGITQSSNERRD--NSGSLH-GLLLGKNILVVDDNKVNLRV 866
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AAG LKKFGA VEC S K AL LQ PH F C MDIQMPEMDGFEAT++IR ME+KAN
Sbjct: 867 AAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFEATKQIRAMEAKAN 926
Query: 935 EQMMN-GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
EQ + S DG + HLP+LAMTADVI AT +EC K GMDGYV+KPFEE+ L++
Sbjct: 927 EQAVACDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQA 986
Query: 994 LAKFF 998
L KF
Sbjct: 987 LQKFL 991
>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 970
Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/977 (58%), Positives = 719/977 (73%), Gaps = 18/977 (1%)
Query: 32 SNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVN 91
+ R W A V W++ S +++ + E R ++ L SMC++RARMLQ+QF VTVN
Sbjct: 7 ARRGWRRLAAVAWVLLAVACSAALHWQLRWETMERAEQRLVSMCEERARMLQEQFGVTVN 66
Query: 92 HVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQ 151
HVHAL IL+STFH+ KNPSA+DQDTFA+YT RT+FERPLL+GVAYA R+ ++E FERQ
Sbjct: 67 HVHALAILISTFHFEKNPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFPHEKETFERQ 126
Query: 152 HGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTR 211
HG + TM E +P++DEYAPV+F Q+ +S++ +DM SGEEDRENILRARATGK VLT
Sbjct: 127 HGWNMKTMNQEAAPLQDEYAPVIFSQDTVSYLARMDMYSGEEDRENILRARATGKPVLTN 186
Query: 212 PFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGN 271
PFRLLGS+HLGVVLTF VY+ L ++VEER++ATAGY+GG FDVESLVENLL +LAGN
Sbjct: 187 PFRLLGSNHLGVVLTFAVYRPDLAADASVEERVEATAGYLGGAFDVESLVENLLSKLAGN 246
Query: 272 QAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPW 331
Q ILVNVYD+TN+S+P+ MYG Q+ DG + LLH S LDFGD FR+H+M CRY QK PW
Sbjct: 247 QDILVNVYDVTNSSEPMAMYGPQSPDGKVGLLHVSMLDFGDPFRRHEMRCRYRQKPPMPW 306
Query: 332 TALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSH 391
+A+T FVI +LVGYI+ A KV +D KM+ELK +AEAADVAKSQFLATVSH
Sbjct: 307 SAITNPLGAFVIWMLVGYIICAAWSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSH 366
Query: 392 EIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451
EIRTPMNG+LGML +LL TDL+ TQ+D+AQTAQ+CG+ALI LIN+VLDRAKIEA +LELE
Sbjct: 367 EIRTPMNGVLGMLDMLLGTDLTMTQKDFAQTAQMCGRALITLINDVLDRAKIEAGRLELE 426
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
AV F+LR+++DDV+SLFS KSR K IELAVFV D VP+ V+GDP RFRQI+TNLVGN+VK
Sbjct: 427 AVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKLVVGDPWRFRQILTNLVGNAVK 486
Query: 512 FTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571
FT+RGH+FV+V LAE + V+ + LN G + V + G NTLSG +AAD RNSW
Sbjct: 487 FTDRGHVFVRVCLAENSNVEANQVLNVTLN-GKDGKVESTANGALNTLSGFQAADERNSW 545
Query: 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQAD 631
+ FK L+ + SN + ++ S+ VTLM+ +EDTG+GIPL AQ+RVF PFMQAD
Sbjct: 546 EYFKLLLSDKESLSN-ELEGEKSNQNDSDHVTLMISIEDTGVGIPLHAQDRVFTPFMQAD 604
Query: 632 SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQS 691
SSTSR+YGGTGIGLSISKCL LM GQISF SRP +GSTF+F+AV + + D K+S
Sbjct: 605 SSTSRNYGGTGIGLSISKCLAGLMGGQISFTSRPSIGSTFTFSAVVKRSCKDTSSDSKRS 664
Query: 692 KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS--SIKDASSTAKNGLTSS 749
SE LP F G+KA++VD + VR+AVT+YHLNRLGI+V++ + S+ + + +NG ++
Sbjct: 665 LSETLPTAFSGMKAILVDGRAVRSAVTRYHLNRLGIIVQVVNNMSVGIQAFSGQNG--AA 722
Query: 750 EDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKA 809
E + +P I+ +E D W D +L + NG V +LPKLILL T+ E DK K
Sbjct: 723 EPREKPSILFIENDTWRPETDIQLLNRLHKPRMNGQVHELPKLILLDTS----EADKDKN 778
Query: 810 GGFADTVIMKPLRASMIAACLQQVLSTE-NKRQAGRGVPNGSSFHQGLLRGKKILVVDDN 868
G + V+ KP+RAS IA+CLQQ+L E +R+ + P SF + LL GK ILVVDDN
Sbjct: 779 GSIFNVVMCKPIRASTIASCLQQLLKVEIPERKENQNRP---SFLRSLLVGKNILVVDDN 835
Query: 869 GVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ 928
VN VAA ALKK+GA V C S K A+ LQ PH FDACFMD+QMPEMDGFEATR+IR+
Sbjct: 836 KVNLRVAAAALKKYGAKVHCVESGKDAISLLQPPHHFDACFMDVQMPEMDGFEATRQIRE 895
Query: 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE 988
ME KANE+ S+ T E H P+LAMTADVI AT+++C+K GMDGYVSKPF+EE
Sbjct: 896 MEKKANEEQKKLTSTEGSTFV--EWHSPVLAMTADVIQATYEKCMKSGMDGYVSKPFDEE 953
Query: 989 NLYRELAKFF--KSKPL 1003
LY+ +++ KS P+
Sbjct: 954 QLYQAVSRLVAGKSDPV 970
>gi|218193648|gb|EEC76075.1| hypothetical protein OsI_13298 [Oryza sativa Indica Group]
Length = 923
Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/931 (62%), Positives = 686/931 (73%), Gaps = 27/931 (2%)
Query: 81 MLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRV 140
MLQDQF V+VNHVHAL ILV+TFHY K+P ALDQDTFA Y RT+FERPLLSGVAYA RV
Sbjct: 1 MLQDQFAVSVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRV 60
Query: 141 VDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILR 200
V A RE FERQ G I TMK EPSP +DEYAPV++ QE +S+++ LD+MSGEEDRENILR
Sbjct: 61 VHADRESFERQQGWIIKTMKHEPSPAQDEYAPVIYSQETISYIEGLDVMSGEEDRENILR 120
Query: 201 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
ARATGKAVLTRPFRL+ S+HLGVVLTFPVY LP + VE+R+ ATAGY+GG FDVESL
Sbjct: 121 ARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAGYLGGAFDVESL 179
Query: 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMI 320
VENLL QLAGNQ ++VNVYD+TN S+PL+MYG + G S H LDFGD RKH+M+
Sbjct: 180 VENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVPLGIPSPSHTYTLDFGDPLRKHQMV 239
Query: 321 CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV 380
CRY K W+A+TT +FVI +LVGYI+Y A V++D KM+ LK RAEAAD+
Sbjct: 240 CRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCRKMEALKKRAEAADI 299
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLATVSHEIRTPMNG+LGML +LLDT+L STQRDYAQTAQ+CGKALI+LINEVLDR
Sbjct: 300 AKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDR 359
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
AKIEA K++LE+V F+LR+ILDDV+SLFS KSR KGIELAV+VS++VPE +LGDPGRFRQ
Sbjct: 360 AKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPGRFRQ 419
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFN 557
IITNLVGNS+KFTERGHIFV+VHLA+ + + T+AK E + +NG +E + +G N
Sbjct: 420 IITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDEAIAIPTSGSHN 479
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
TLSG EAAD RN+W+ FK L+ E N M S+ VTL+V VEDTGIGIPL
Sbjct: 480 TLSGFEAADSRNNWENFKLLLSYEK--------NEMPYESDSDKVTLVVSVEDTGIGIPL 531
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
AQ RVF PFMQADSSTSR+YGGTGIGLSISKCLVE+M GQI+FVSRP VGSTF+FTAV
Sbjct: 532 HAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTFTAVL 591
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD 737
+C + D K LP FKGL A++VD++PVRA VT+YHL RLGI ++ +I
Sbjct: 592 RRCDKNAISDSKTVALHPLPSSFKGLSALLVDKRPVRATVTKYHLQRLGITSEVVGTIDP 651
Query: 738 ASS--TAKNGLT-SSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+ +NG + +S K QP ++L+E D W D +A+L + K + + LPK+ L
Sbjct: 652 TFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFL 711
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL-----STENKRQAG--RGVP 847
L S E DK K D+VI KPL+AS +AACL Q L S E + +G G
Sbjct: 712 L----SAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKRDDSGSLHGRD 767
Query: 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDA 907
S H GLL GK ILVVDDN VN VAAG LKK+GA VEC S K AL LQ PH FD
Sbjct: 768 GSGSLH-GLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDL 826
Query: 908 CFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967
C MDIQMPEMDGFEATR+IR ME KANEQ + S + AK + HLPILAMTADVI A
Sbjct: 827 CLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQA 886
Query: 968 TFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
T +EC KCGMDGYVSKPFEE+ L++ + KF
Sbjct: 887 THEECTKCGMDGYVSKPFEEKQLFQAVQKFL 917
>gi|118790708|tpd|FAA00251.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 970
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/945 (60%), Positives = 700/945 (74%), Gaps = 36/945 (3%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
R +E L SMC++RARMLQ+QF VTVNHVHAL IL+STFH+ K PSA+DQDTFA+YT RT+
Sbjct: 40 RAEERLVSMCEERARMLQEQFGVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTS 99
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKS 185
FERPLL+GVAYA R+ +RE FE Q G + TMK + +P +DEYAPV+F Q+ +S++
Sbjct: 100 FERPLLNGVAYAQRIFHHEREMFENQQGWIMKTMKRQAAPPQDEYAPVIFSQDTVSYLAR 159
Query: 186 LDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIK 245
+DMMSGEEDRENILRARATGKAVLT PFRLLGS+HLGVVLTF VY+ L ++VEER++
Sbjct: 160 IDMMSGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVE 219
Query: 246 ATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHE 305
ATAGY+GG FDVESLVENLL +LAGNQ I+VNVYD+TNAS+P+ MYG Q+ DG +SL H
Sbjct: 220 ATAGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQSPDGKVSLFHV 279
Query: 306 SELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDF 365
S LDFGD FR H+M CRY QK PW+A+T FVI +LVGYI+ A KV +D
Sbjct: 280 STLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDC 339
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +LL TDLS TQ+DYAQTAQ+
Sbjct: 340 RKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYAQTAQM 399
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
CG+ALI LIN+VLDRAKIEA KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D
Sbjct: 400 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCD 459
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNG--- 542
VP+ V+GDP R+RQI+TNLVGN+VKFTERGH+FV+V LAE + V+ + +LNG
Sbjct: 460 DVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEAN----QVLNGTMN 515
Query: 543 GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
G + V + G FNTLSG +AAD RN+WD FK L+ + + + N + V
Sbjct: 516 GKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQN-DCDCV 574
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TLM+ +EDTG+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCL ELM GQISF
Sbjct: 575 TLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFT 634
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
SRP VGSTF+F+AV + + D K+S SE LP FKG+KA++VD +PVR AVT+YHL
Sbjct: 635 SRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAILVDGRPVRGAVTRYHL 694
Query: 723 NRLGIMVKMSSSIKDASST--AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
NRLGI+VK+ +++ T +NG+ S +K ++ +E D W D +L +
Sbjct: 695 NRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLS--MLFIESDIWRPETDILLLNRLHEL 752
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST---E 837
K NG V +LPKL+LL T+ E DK + G D V+ KP+RAS IA+CLQQ+L E
Sbjct: 753 KNNGQVHELPKLVLLVTS----EADKDRYGSAFDIVMYKPIRASTIASCLQQLLKVVMPE 808
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
K R SF + LL GK IL+VDDN VN VAA ALKK+GA V C S K A+
Sbjct: 809 RKDNQNR-----PSFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVS 863
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ-----MMNGGSSVDGTAKRDE 952
LQ PHCFDACFMD+QMPEMDGFEATR+IRQME KANE+ +M G + V E
Sbjct: 864 LLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFV-------E 916
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
HLP+LAMTADVI AT++EC+K GMDGYVSKPF+EE LY+ +++
Sbjct: 917 SHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 961
>gi|218191539|gb|EEC73966.1| hypothetical protein OsI_08865 [Oryza sativa Indica Group]
Length = 985
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/958 (59%), Positives = 702/958 (73%), Gaps = 47/958 (4%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
R +E L SMC++RARMLQ+QF VTVNHVHAL IL+STFH+ K PSA+DQDTFA+YT RT+
Sbjct: 40 RAEERLVSMCEERARMLQEQFGVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTS 99
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKS 185
FERPLL+GVAYA R+ +RE FE Q G + TMK + +P +DEYAPV+F Q+ +S++
Sbjct: 100 FERPLLNGVAYAQRIFHHEREMFENQQGWIMKTMKRQAAPPQDEYAPVIFSQDTVSYLAR 159
Query: 186 LDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIK 245
+DMMSGEEDRENILRARATGKAVLT PFRLLGS+HLGVVLTF VY+ L ++VEER++
Sbjct: 160 IDMMSGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVE 219
Query: 246 ATAG---------------YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIM 290
ATAG Y+GG FDVESLVENLL +LAGNQ I+VNVYD+TNAS+P+ M
Sbjct: 220 ATAGCLVVVVSSNQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAM 279
Query: 291 YGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYI 350
YG Q+ DG +SL H S LDFGD FR H+M CRY QK PW+A+T FVI +LVGYI
Sbjct: 280 YGPQSPDGKVSLFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYI 339
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+ A KV +D KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +LL T
Sbjct: 340 ICAAWSRYDKVSEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGT 399
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
DLS TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEA KLELEAV F+LR+++DDV+SLFS
Sbjct: 400 DLSMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSS 459
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
KSR K IELAVFV D VP+ V+GDP R+RQI+TNLVGN+VKFTERGH+FV+V LAE + V
Sbjct: 460 KSREKCIELAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKV 519
Query: 531 KTDAKDETLLNG---GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNA 587
+ + +LNG G + V + G FNTLSG +AAD RN+WD FK L+ + +
Sbjct: 520 EAN----QVLNGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDE 575
Query: 588 SIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647
+ N + VTLM+ +EDTG+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSI
Sbjct: 576 LECDRSYQN-DCDCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSI 634
Query: 648 SKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
SKCL ELM GQISF SRP VGSTF+F+AV + + D K+S SE LP FKG+KA++
Sbjct: 635 SKCLAELMGGQISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAIL 694
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST--AKNGLTSSEDKFQPDIILVEKDCW 765
VD +PVR AVT+YHLNRLGI+VK+ +++ T +NG+ S +K ++ +E D W
Sbjct: 695 VDGRPVRGAVTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLS--MLFIESDIW 752
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
D +L + K NG V +LPKL+LL T+ E DK + G D V+ KP+RAS
Sbjct: 753 RPETDILLLNRLHELKNNGQVHELPKLVLLVTS----EADKDRYGSAFDIVMYKPIRAST 808
Query: 826 IAACLQQVLS-TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
IA+CLQQ+L +R+ + P SF + LL GK IL+VDDN VN VAA ALKK+GA
Sbjct: 809 IASCLQQLLKVVMPERKDNQNRP---SFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGA 865
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ-----MMN 939
V C S K A+ LQ PHCFDACFMD+QMPEMDGFEATR+IRQME KANE+ +M
Sbjct: 866 KVHCVESGKDAVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLME 925
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
G + V E HLP+LAMTADVI AT++EC+K GMDGYVSKPF+EE LY+ +++
Sbjct: 926 GSTFV-------ESHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 976
>gi|46390553|dbj|BAD16039.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
Length = 984
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/957 (59%), Positives = 702/957 (73%), Gaps = 46/957 (4%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
R +E L SMC++RARMLQ+QF VTVNHVHAL IL+STFH+ K PSA+DQDTFA+YT RT+
Sbjct: 40 RAEERLVSMCEERARMLQEQFGVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTS 99
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKS 185
FERPLL+GVAYA R+ +RE FE Q G + TMK + +P +DEYAPV+F Q+ +S++
Sbjct: 100 FERPLLNGVAYAQRIFHHEREMFENQQGWIMKTMKRQAAPPQDEYAPVIFSQDTVSYLAR 159
Query: 186 LDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIK 245
+DMMSGEEDRENILRARATGKAVLT PFRLLGS+HLGVVLTF VY+ L ++VEER++
Sbjct: 160 IDMMSGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVE 219
Query: 246 ATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHE 305
ATAGY+GG FDVESLVENLL +LAGNQ I+VNVYD+TNAS+P+ MYG Q+ DG +SL H
Sbjct: 220 ATAGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQSPDGKVSLFHV 279
Query: 306 SELDFGDSFRKHKMIC--RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVED 363
S LDFGD FR H+M C RY QK PW+A+T FVI +LVGYI+ A KV +
Sbjct: 280 STLDFGDPFRAHEMRCRSRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSE 339
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGIL------------GMLALLLDTD 411
D KM+ELK +AEAADVAKSQFLATVSHEIRTPMNG+L GML +LL TD
Sbjct: 340 DCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLVVQRSKILPFDVGMLDMLLGTD 399
Query: 412 LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK 471
LS TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEA KLELEAV F+LR+++DDV+SLFS K
Sbjct: 400 LSMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSK 459
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531
SR K IELAVFV D VP+ V+GDP R+RQI+TNLVGN+VKFTERGH+FV+V LAE + V+
Sbjct: 460 SREKCIELAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVE 519
Query: 532 TDAKDETLLNG---GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNAS 588
+ +LNG G + V + G FNTLSG +AAD RN+WD FK L+ + +
Sbjct: 520 AN----QVLNGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDEL 575
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+ N + VTLM+ +EDTG+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSIS
Sbjct: 576 ECDRSYQN-DCDCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSIS 634
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
KCL ELM GQISF SRP VGSTF+F+AV + + D K+S SE LP FKG+KA++V
Sbjct: 635 KCLAELMGGQISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAILV 694
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST--AKNGLTSSEDKFQPDIILVEKDCWI 766
D +PVR AVT+YHLNRLGI+VK+ +++ T +NG+ S +K ++ +E D W
Sbjct: 695 DGRPVRGAVTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLS--MLFIESDIWR 752
Query: 767 SGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
D +L + K NG V +LPKL+LL T+ E DK + G D V+ KP+RAS I
Sbjct: 753 PETDILLLNRLHELKNNGQVHELPKLVLLVTS----EADKDRYGSAFDIVMYKPIRASTI 808
Query: 827 AACLQQVLS-TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
A+CLQQ+L +R+ + P SF + LL GK IL+VDDN VN VAA ALKK+GA
Sbjct: 809 ASCLQQLLKVVMPERKDNQNRP---SFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAK 865
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ-----MMNG 940
V C S K A+ LQ PHCFDACFMD+QMPEMDGFEATR+IRQME KANE+ +M G
Sbjct: 866 VHCVESGKDAVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEG 925
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ V E HLP+LAMTADVI AT++EC+K GMDGYVSKPF+EE LY+ +++
Sbjct: 926 STFV-------ESHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 975
>gi|357521453|ref|XP_003631015.1| Histidine kinase [Medicago truncatula]
gi|355525037|gb|AET05491.1| Histidine kinase [Medicago truncatula]
Length = 760
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/755 (73%), Positives = 628/755 (83%), Gaps = 6/755 (0%)
Query: 250 YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELD 309
Y+GG FDVESLVENLLGQLAG+QAILVNVYD+TN+SDPLIMYG+Q ++GD+SL+HES+LD
Sbjct: 9 YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 68
Query: 310 FGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ 369
FGD +RKH+MICRYHQKA WTAL+TA FVI LL+GYILYGA HIVKVEDDFH+MQ
Sbjct: 69 FGDPYRKHQMICRYHQKAPPNWTALSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQ 128
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML LLL T+L+STQRDYAQTAQ CGKA
Sbjct: 129 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKA 188
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
LIALINEVLDRAKIEA KLELEAV F+LR+ILDDVLSLFSEKSR+KG+ELAVFVSDKVP+
Sbjct: 189 LIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPD 248
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GDPGRFRQI+TNLVGNSVKFTERGHIFVKVHL+E T+ K ET NGG+EE V
Sbjct: 249 IVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVH 308
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
SG TLSG EAAD RN+WD F HLI E F +AS +ASN E VTLMVCVE
Sbjct: 309 ASGGYNLKTLSGYEAADERNNWDNFNHLIADEEFFCDAS-TKKVASNEFYEQVTLMVCVE 367
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTGIGIP SAQ+R+FMPF+QADSSTSR+YGGTGIGLSISKCLVELM GQI+F+SRPQVGS
Sbjct: 368 DTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGS 427
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TFSFTA FG K+ ++K+ EDLP F+GLKAVVVD KPVRAAVT+YHL RLGI V
Sbjct: 428 TFSFTADFGIFKKNPITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQV 487
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
K++++I A S SS FQPDII VEKD W+ GED F+ + LDWK NGH+FK+
Sbjct: 488 KVANAINKAVSLCGKNGASSTGLFQPDIIFVEKDSWVCGEDGIFSVRQLDWKQNGHIFKM 547
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
P++ILLATNIS DE DKAK+ GF+DTVIMKPLRASM+ ACLQQVL T KRQ G+ +PNG
Sbjct: 548 PQMILLATNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNG 607
Query: 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909
S+ + LL GKKILVVDDN VNR VAAGALK FGA V+CA S KAAL+ LQ PH FDACF
Sbjct: 608 STSVRSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHKFDACF 667
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MDIQMPEMDGFEATRRIR+ME ANE+ ++ + ++ E HLPILAMTADVIHAT+
Sbjct: 668 MDIQMPEMDGFEATRRIREMERTANEE-----TNSECGERKSEFHLPILAMTADVIHATY 722
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
+ECLKCGMDGYVSKPFEEENLY+ +AKFF++KP S
Sbjct: 723 EECLKCGMDGYVSKPFEEENLYQAVAKFFQTKPTS 757
>gi|224029415|gb|ACN33783.1| unknown [Zea mays]
gi|413938768|gb|AFW73319.1| putative histidine kinase family protein [Zea mays]
Length = 974
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/989 (56%), Positives = 706/989 (71%), Gaps = 36/989 (3%)
Query: 21 MGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRAR 80
MG K Y ++ R W A W++ S ++ + ++ R +E L SMC++RAR
Sbjct: 1 MGGK--YRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERAR 58
Query: 81 MLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRV 140
MLQ+QF VTVNHVHA+ IL+STF++ K+P A+DQDTFA+YT RT+FERPLL+GVA+A RV
Sbjct: 59 MLQEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRV 118
Query: 141 VDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILR 200
+RE FE Q G + TM+ EP+P + EYAPV+F Q+ +S++ +DMMSGEEDRENI R
Sbjct: 119 FHHEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFR 178
Query: 201 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
AR TGKAVLT PFRLLGS+HLGVVLTF VY+ LP ++VE+R++AT GY+GG FDVESL
Sbjct: 179 ARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESL 238
Query: 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMI 320
VENLL +LAGNQ I+VNVYD+TNASD +++YG + D + LH S LDFGD FRKH+M
Sbjct: 239 VENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMR 298
Query: 321 CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV 380
CRY QK PW+A+T FVI +L+GY + A KV +D KM+ELK +AEAADV
Sbjct: 299 CRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADV 358
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLATVSHEIRTPMNG+LGML +LL TDL+ TQ+DYAQTAQ+CG+ALI LIN+VLDR
Sbjct: 359 AKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDR 418
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
AKIEA KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D VP+ V+GDP RFRQ
Sbjct: 419 AKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQ 478
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT-GQFNTL 559
I+TNLVGN+VKFTERGH+FV+V LAE + V+ + +NG + G S T G FNTL
Sbjct: 479 ILTNLVGNAVKFTERGHVFVRVCLAENSNVEANQVLHGAMNG--KGGRVESTTNGAFNTL 536
Query: 560 SGLEAADGRNSWDKFKHLI--------DAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
SG EAAD RNSW FK L+ D EG SN S S VTL + +EDT
Sbjct: 537 SGFEAADRRNSWQYFKLLLSDKESLLDDLEGENSNQS---------DSNHVTLAISIEDT 587
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCL ELM GQISF S P VGSTF
Sbjct: 588 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTF 647
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
+F+A + + D +S +E LP FKG+KA++VD +PVR+AVT+YHL RLGI++++
Sbjct: 648 TFSATLKHSYKDISVDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQV 707
Query: 732 SSSIKDASST--AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
+++ +NG T S +K I+ +E D W D L + K NG +
Sbjct: 708 VNNMNAVVKAFPGQNGATGSREK--ASILFIESDFWRPETDVQLLNHLREQK-NGQLSDG 764
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-NKRQAGRGVPN 848
K++LL T+ E DK K G D V+ KP+RAS IA+ +QQ+L E +R+ + P
Sbjct: 765 HKVVLLVTS----EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRP- 819
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
SF + LL GK ILVVDDN VN VAA ALKK+GA V C S K A+ LQ PH FDAC
Sbjct: 820 --SFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDAC 877
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
FMD+QMPEMDGFEAT +IRQME KANE+ N +S++G+ E HLP+LAMTADVI AT
Sbjct: 878 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTA-EYHLPVLAMTADVIQAT 936
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKF 997
++EC+K GMDGYVSKPF+EE LY+ +++
Sbjct: 937 YEECIKSGMDGYVSKPFDEEQLYQAVSRL 965
>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
Length = 974
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/981 (56%), Positives = 703/981 (71%), Gaps = 20/981 (2%)
Query: 21 MGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRAR 80
MG K Y ++ R W A W++ S ++ + ++ R +E L SMC++RAR
Sbjct: 1 MGGK--YRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERAR 58
Query: 81 MLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRV 140
MLQ+QF VTVNHVHA+ IL+STF++ K+P A+DQDTFA+YT RT+FERPLL+GVA+A RV
Sbjct: 59 MLQEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRV 118
Query: 141 VDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILR 200
+RE FE Q G + TM+ EP+P + EYAPV+F Q+ +S++ +DMMSGEEDRENI R
Sbjct: 119 FHHEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFR 178
Query: 201 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
AR TGKAVLT PFRLLGS+HLGVVLTF VY+ LP ++VE+R++AT GY+GG FDVESL
Sbjct: 179 ARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESL 238
Query: 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMI 320
VENLL +LAGNQ I+VNVYD+TNASD +++YG + D + LH S LDFGD FRKH+M
Sbjct: 239 VENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMR 298
Query: 321 CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV 380
CRY QK PW+A+T FVI +L+GY + A KV +D KM+ELK +AEAADV
Sbjct: 299 CRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADV 358
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLAT SHEIRTPMNG+LGML +LL TDL+ TQ+DYAQTAQ+CG+ALI LIN+VLDR
Sbjct: 359 AKSQFLATASHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDR 418
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
AKIEA KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D VP+ V+GDP RFRQ
Sbjct: 419 AKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQ 478
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
I+TNLVGN+VKFTERGH+FV+V LAE + ++ + +NG V + G FNTLS
Sbjct: 479 ILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR-VESTANGAFNTLS 537
Query: 561 GLEAADGRNSWDKFKHLI-DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
G EAAD RNSW FK L+ D E + N ++ S+ VTL + +EDTG+GIPL A
Sbjct: 538 GFEAADRRNSWQYFKLLLSDKESLLDDLESEN--SNQSDSDRVTLAISIEDTGVGIPLQA 595
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
Q+RVF PFMQADSSTSR+YGGTGIGLSISKCL ELM GQISF S P VGSTF+F+A
Sbjct: 596 QDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKH 655
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ + D +S +E LP FKG+KA++VD +PVR+AVT+YHL RLGI++++ +++
Sbjct: 656 SHKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVV 715
Query: 740 ST--AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLAT 797
+NG S +K I+ +E D W D L + K NG + K++LL T
Sbjct: 716 KAFPGQNGAAGSREK--ASILFIESDFWRPETDVQLLNHLREQK-NGQLSDGHKVVLLVT 772
Query: 798 NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-NKRQAGRGVPNGSSFHQGL 856
+ E DK K G D V+ KP+RAS IA+ +QQ+L E +R+ + P SF + L
Sbjct: 773 S----EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRP---SFLRSL 825
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK ILVVDDN VN VAA ALKK+GA V C S K A+ LQ PH FDACFMD+QMPE
Sbjct: 826 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPE 885
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDGFEAT +IRQME KANE+ N +S++G+ E HLP+LAMTADVI AT++EC+K G
Sbjct: 886 MDGFEATGQIRQMELKANEERKNKLASIEGSTTA-EYHLPVLAMTADVIQATYEECIKSG 944
Query: 977 MDGYVSKPFEEENLYRELAKF 997
MDGYVSKPF+EE LY+ +++
Sbjct: 945 MDGYVSKPFDEEQLYQAVSRL 965
>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
Length = 973
Score = 1076 bits (2783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/985 (57%), Positives = 704/985 (71%), Gaps = 39/985 (3%)
Query: 27 YTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQF 86
Y+ ++NR W A W++ + ++ ++ R +E L SMC++RARMLQ+QF
Sbjct: 5 YSGARTNRRWRGLAAAAWVLIAVAGAAVMHWTQRRQSMDRAEERLVSMCEERARMLQEQF 64
Query: 87 NVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQRE 146
VTVNHVHA+ IL++TF+Y K+P A+D DTFA YT RT+FERPLL+GVAYA RV +RE
Sbjct: 65 GVTVNHVHAIAILIATFNYEKSPPAIDPDTFATYTARTSFERPLLNGVAYAQRVFHHERE 124
Query: 147 QFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGK 206
FE Q G + TM+ EP+P RDEYAPV+F Q+ +S++ +DMMSGEED+ENILRAR TGK
Sbjct: 125 MFESQQGWIMNTMQREPAPPRDEYAPVIFSQDTVSYLARIDMMSGEEDQENILRARTTGK 184
Query: 207 AVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLG 266
AVLT PFRLLGS+HLGVVLTF VY+ LP ++VE+R++AT GY+GG FDVESLVENLL
Sbjct: 185 AVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGGFDVESLVENLLS 244
Query: 267 QLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQK 326
+LAGNQ I+VNVYD+TNAS+P+ +YG D + LH S LDFGD FR+H+M CRY QK
Sbjct: 245 KLAGNQDIVVNVYDVTNASEPMALYGPSILDEQVP-LHVSMLDFGDPFRRHEMRCRYRQK 303
Query: 327 ASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFL 386
PW+ +T LFVI +L+GY + A KV +D KM+ELK +AEAADVAKSQFL
Sbjct: 304 PPIPWSTITNPLGLFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFL 363
Query: 387 ATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEAR 446
ATVSHEIRTPMNG+LGML +LL TDL+ TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEA
Sbjct: 364 ATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAG 423
Query: 447 KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLV 506
KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D VP+ VLGDP RFRQI+TNLV
Sbjct: 424 KLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVLGDPWRFRQILTNLV 483
Query: 507 GNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT-GQFNTLSGLEAA 565
GN+VKFTERGH+FV+V LAE + ++ + +NG ++G S T G FNTLSG EAA
Sbjct: 484 GNAVKFTERGHVFVRVCLAENSNMEANQVLHGTMNG--KDGKVESTTNGAFNTLSGFEAA 541
Query: 566 DGRNSWDKFKHLI--------DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
D RNSW FK L+ D EG SN S S+ VTL + +EDTG+GIPL
Sbjct: 542 DRRNSWQYFKLLLSNKESLLDDLEGENSNLS---------DSDHVTLAISIEDTGVGIPL 592
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCL ELM GQISF SRP VGSTF+F+A
Sbjct: 593 QAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTFSATL 652
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK----MSS 733
+ + + D +S SE LP FKG+KA+++D +PVR+AVT+YHL RLGI+V+ MS+
Sbjct: 653 KRSYKDISVDSSRSLSEALPTAFKGMKAILIDGRPVRSAVTKYHLKRLGIIVQVVNNMST 712
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+K + +NG T S +K ++ +E D W D L + K NG + PK++
Sbjct: 713 VVK--AFPGQNGATVSREK--ATMLFIESDFWRPETDVQLLNHLREHK-NGLLSDAPKVV 767
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-NKRQAGRGVPNGSSF 852
LL T+ E DK G D V+ KP+RAS IA+ +QQ+L E KR+ + P SF
Sbjct: 768 LLVTS----EADKDNYGSIFDIVMCKPIRASTIASSIQQLLKVEMPKRKENQNRP---SF 820
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
+ LL GK ILVVDDN VN VAA ALKK+GA V C S K A+ LQ PH F ACFMD+
Sbjct: 821 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHSFHACFMDV 880
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMPEMDGFEATR+IRQME KANE+ N S + + E LP+LAMTADVI AT++EC
Sbjct: 881 QMPEMDGFEATRQIRQMEMKANEERKNKLSLTEASTFV-EYRLPVLAMTADVIQATYEEC 939
Query: 973 LKCGMDGYVSKPFEEENLYRELAKF 997
+K GMDGYVSKPF+EE L + +++
Sbjct: 940 IKSGMDGYVSKPFDEEQLCQVVSRL 964
>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
Length = 975
Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/983 (57%), Positives = 703/983 (71%), Gaps = 34/983 (3%)
Query: 27 YTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQF 86
Y + R W A W++ S ++ M E+ R +E L SMC++RARMLQ+QF
Sbjct: 6 YCAAMTKRRWRGLAAAAWVLVAVACSAVMHWTMRRESMDRAEERLVSMCEERARMLQEQF 65
Query: 87 NVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQRE 146
VTVNHVHA+ IL++TF+Y K+PSA+DQDTFA+YT RT+FERPLL+GVAYA RV +RE
Sbjct: 66 GVTVNHVHAIAILIATFNYDKSPSAIDQDTFAKYTARTSFERPLLNGVAYAQRVFHHERE 125
Query: 147 QFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGK 206
FE Q G + TM+ EP+P + EYAPV+F Q+ +S++ +DMMSGEEDRENILRAR TGK
Sbjct: 126 MFESQQGWIMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENILRARTTGK 185
Query: 207 AVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLG 266
AVLT PFRLLGS+HLGVVLTF VY+ LP ++VE+R++AT GY+GG FDVESLVENLL
Sbjct: 186 AVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLS 245
Query: 267 QLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQK 326
+LAGNQ I+VNVYD+TNAS+ +++YG + D + LH S LDFGD FR+H+M CRY QK
Sbjct: 246 KLAGNQDIVVNVYDVTNASEAMVLYGPSSSDERVPFLHVSMLDFGDPFRRHEMRCRYRQK 305
Query: 327 ASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFL 386
W+A+T FVI +L+GY + A KV +D KM+ELK +AEAADVAKSQFL
Sbjct: 306 LPMQWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFL 365
Query: 387 ATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEAR 446
ATVSHEIRTPMNG+LGML +LL TDL+ TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEA
Sbjct: 366 ATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAG 425
Query: 447 KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLV 506
KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D VP+ VLGDP RFRQI+TNLV
Sbjct: 426 KLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVLGDPWRFRQILTNLV 485
Query: 507 GNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNG---GTEEGVCRSGTGQFNTLSGLE 563
GN+VKFTERGH+FV+V LA+ + ++ +LNG G + V + G FNTLSG E
Sbjct: 486 GNAVKFTERGHVFVRVCLADNSNMEAG----QVLNGAMNGKDGRVDSTTNGAFNTLSGFE 541
Query: 564 AADGRNSWDKFKHLI-DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQER 622
AAD RNSW FK L+ D E + N + S+ VTL + +EDTG+GIPL AQ+R
Sbjct: 542 AADRRNSWQYFKMLLSDKESLLDDLEGTN--SDQSDSDHVTLAISIEDTGVGIPLQAQDR 599
Query: 623 VFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKE 682
VF PFMQADSSTSR+YGGTGIGLSISKCL ELM GQISFVSRP VGSTF+F+ + +
Sbjct: 600 VFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGSTFTFSTTLKRSYK 659
Query: 683 YVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK----MSSSIKDA 738
+ D +S SE LP FKG+KA+++D +PVR+AVT+YHL RLGI V+ MS+ +K
Sbjct: 660 DISVDSSRSLSEALPTAFKGMKAILIDGRPVRSAVTRYHLKRLGITVQAVNNMSAVVK-- 717
Query: 739 SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK----PNGHVFKLPKLIL 794
+ +NG T S +K I+ +E D W D L + K +GH K++L
Sbjct: 718 AFPGQNGATVSREK--ATILFIESDFWRPETDVQLLNHLREHKNRQLSDGH-----KVVL 770
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ 854
L T+ E DK K G D V+ KP+RASMIA+ +QQ+L E + R N SF +
Sbjct: 771 LVTS----EADKDKYGSIFDIVMCKPIRASMIASSIQQLLKVEMPER--RDNQNRPSFLR 824
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
LL GK ILVVDDN VN VAA ALKK+GA V C S K A+ LQ PHCFDACFMD+QM
Sbjct: 825 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHCFDACFMDVQM 884
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
PEMDGFEATR+IRQ E + NE+ N ++G+ E HLP+LAMTADVI AT+++C+K
Sbjct: 885 PEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFV-EYHLPVLAMTADVIQATYEKCIK 943
Query: 975 CGMDGYVSKPFEEENLYRELAKF 997
GMDGYVSKPF+EE LY+ +++
Sbjct: 944 SGMDGYVSKPFDEEQLYQAVSRL 966
>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
Length = 975
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/984 (56%), Positives = 703/984 (71%), Gaps = 34/984 (3%)
Query: 27 YTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQF 86
Y + R W A W++ S ++ M E+ R +E L SMC++RARMLQ+QF
Sbjct: 6 YCAAMTKRRWRGLAAAAWVLVAVACSAVMHWTMRRESMDRAEERLVSMCEERARMLQEQF 65
Query: 87 NVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQRE 146
VTVNHVHA+ IL++TF+Y K+PSA+DQDTFA+YT RT+FERPLL+GVAYA RV +RE
Sbjct: 66 GVTVNHVHAIAILIATFNYDKSPSAIDQDTFAKYTARTSFERPLLNGVAYAQRVFHHERE 125
Query: 147 QFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGK 206
FE Q G + TM+ EP+P + EYAPV+F Q+ +S++ +DMMSGEEDRENILRAR TGK
Sbjct: 126 MFESQQGWIMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENILRARTTGK 185
Query: 207 AVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLG 266
AVLT PFRLLGS+HLGVVLTF VY+ LP ++VE+R++AT GY+GG FDVESLVENLL
Sbjct: 186 AVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLS 245
Query: 267 QLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQK 326
+LAGNQ I+VNVYD+TNAS+ +++YG + D + LH S LDFGD FR+H+M CRY QK
Sbjct: 246 KLAGNQDIVVNVYDVTNASEAMVLYGPSSSDERVPFLHVSMLDFGDPFRRHEMRCRYRQK 305
Query: 327 ASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFL 386
W+A+T FVI +L+GY + A KV +D KM+ELK +AEAADVAKSQFL
Sbjct: 306 LPMQWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFL 365
Query: 387 ATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEAR 446
ATVSHEIRTPMNG+LGML +LL TDL+ TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEA
Sbjct: 366 ATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAG 425
Query: 447 KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLV 506
KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D VP+ VLGDP RFRQI+TNLV
Sbjct: 426 KLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVLGDPWRFRQILTNLV 485
Query: 507 GNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNG---GTEEGVCRSGTGQFNTLSGLE 563
GN+VKFTERGH+FV+V LA+ + ++ +LNG G + V + G FNTLSG E
Sbjct: 486 GNAVKFTERGHVFVRVCLADNSNMEAG----QVLNGAMNGKDGRVDSTTNGAFNTLSGFE 541
Query: 564 AADGRNSWDKFKHLI-DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQER 622
AAD RNSW FK L+ D E + N + S+ VTL + +EDTG+GIPL AQ+R
Sbjct: 542 AADRRNSWQYFKMLLSDKESLLDDLEGTN--SDQSDSDHVTLAISIEDTGVGIPLQAQDR 599
Query: 623 VFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKE 682
VF PFMQADSSTSR+YGGTGIGLSISKCL ELM GQISFVSRP VGSTF+F+ + +
Sbjct: 600 VFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGSTFTFSTTLKRSYK 659
Query: 683 YVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK----MSSSIKDA 738
+ D +S E LP FKG+KA+++D +PVR+AVT+YHL RLGI+V+ MS+ +K
Sbjct: 660 DISVDSSRSLLEALPTAFKGMKAILIDGRPVRSAVTRYHLKRLGIIVQVVNNMSAVVK-- 717
Query: 739 SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK----PNGHVFKLPKLIL 794
+ +NG T S +K I+ +E D W D L + K +GH K++L
Sbjct: 718 AFPGQNGATVSREK--ATILFIESDFWRPETDVQLLNHLREHKNRQLSDGH-----KVVL 770
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ 854
L T+ E DK K G D V+ KP+RASMIA+ +QQ+L E + R N SF +
Sbjct: 771 LVTS----EADKDKYGSIFDIVMCKPIRASMIASSIQQLLKVEMPER--RNNHNRPSFLR 824
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
LL GK ILVVDDN VN VAA ALKK+GA V C S K A+ LQ PHCFDACFMD+QM
Sbjct: 825 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHCFDACFMDVQM 884
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
PEMDGFEATR+IRQ E + NE+ N ++G+ E HLP+LAMTADVI AT+++C+K
Sbjct: 885 PEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFV-EYHLPVLAMTADVIQATYEKCIK 943
Query: 975 CGMDGYVSKPFEEENLYRELAKFF 998
GMDGYVSKPF+EE LY+ +++
Sbjct: 944 SGMDGYVSKPFDEEQLYQAVSRLI 967
>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
Length = 1400
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/983 (55%), Positives = 687/983 (69%), Gaps = 40/983 (4%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L+++++ IS+ ++ ++++ +RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 350 WRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHA 409
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ K+PSA+DQ TF EYT RTAFERPL SGVAYA +V+ ++RE FE +HG T
Sbjct: 410 LAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFENEHGWT 469
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E PSPI+DEYAPV+F QE +SH+ S+DMMSG+EDRENILRA
Sbjct: 470 IKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 529
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+RI+AT GY+G +DV SLV
Sbjct: 530 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLV 589
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
+ LL QLA Q I+VNVYD TNAS P+ MYG D LL S LDFGD RKH+M C
Sbjct: 590 KKLLHQLASKQTIVVNVYDTTNASAPINMYG--TNVTDTGLLRISNLDFGDPARKHEMHC 647
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ QK PWTA+T + + VI LLVG+I + A I KVE D+ +M ELKVRAEAADVA
Sbjct: 648 RFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVA 707
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+D+ L + Q+DYA+TA GK LI+LINEVLD+A
Sbjct: 708 KSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQA 767
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELEAV F+LRA LD+VLSLFS KS KGIELAV++SD+VPEFV+GDPGRFRQI
Sbjct: 768 KIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQI 827
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ++GHIFV VHLA+ + D +DE L + V S +NTLS
Sbjct: 828 ITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQ--SLNIVHDSSNNSYNTLS 885
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G + SW+KFK L + + + I L+V VEDTG+GIP AQ
Sbjct: 886 GFPVVNRWKSWEKFKKLXCTDSMEETSII-------------KLLVTVEDTGVGIPSEAQ 932
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+FMPFMQADSSTSR YGGTGIGLSISK LV+LM G+I F S P GSTFSFT F K
Sbjct: 933 SRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTK- 991
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
E D KQ + F+GL+A+VVD + +RA VT+YHL RLGI V + S+ A S
Sbjct: 992 GETSLLDTKQQPHDPAGSEFQGLRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACS 1051
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV---FKLPKLILLAT 797
N S ++LV+K+ W F+ L + +PNG V K PK+ LL T
Sbjct: 1052 YLSNNSDPSAST-SVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDT 1110
Query: 798 NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL 857
++S E ++ K+ GF D V+MKPLR S++ +C Q+V ++QA RG P LL
Sbjct: 1111 SLSSAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGKPLTLG---NLL 1167
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
R K+ILVVDDN VNR VA ALKK+GA V C S KAAL L+ PH FDACFMD+QMPEM
Sbjct: 1168 REKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEM 1227
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DGF+AT+ IR+MESK NE++ +G S++ A H PILAMTADVI A +EC+KCGM
Sbjct: 1228 DGFKATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKCGM 1287
Query: 978 DGYVSKPFEEENLYRELAKFFKS 1000
DGYV+KPFEE+ LY +A FF+S
Sbjct: 1288 DGYVAKPFEEDQLYSAVAHFFES 1310
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 18/156 (11%)
Query: 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHV 93
R W K L+LW++G+ I + + + + RKE +C+++AR+L + FNV+ N +
Sbjct: 75 RKWRRKFLLLWLLGV-IIGLICFLXVLNAGALSRKEKTPDLCEEKARILLEHFNVSKNQL 133
Query: 94 HALTIL----------------VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYA 137
H+L L V F Y++ + E T FE P + +A A
Sbjct: 134 HSLASLFAESDQGQWDIDHKANVEFFKYWQKKYKDGKIASLECTKEAGFEMPPGNAIACA 193
Query: 138 PRVVDAQREQFERQHGMTITTMK-SEPSPIRDEYAP 172
+V +Q ++FE+QH +++ ++ P+RDE P
Sbjct: 194 LKVPCSQNQEFEKQHDQAAESLEPNDQCPVRDENIP 229
>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
Length = 1272
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/983 (55%), Positives = 686/983 (69%), Gaps = 40/983 (4%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L+++++ IS+ ++ ++++ +RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 311 WRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHA 370
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ K+PSA+DQ TF EYT RTAFERPL SGVAYA +V+ ++RE FE++HG T
Sbjct: 371 LAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWT 430
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E PSPI+DEYAPV+F QE +SH+ S+DMMSG+EDRENILRA
Sbjct: 431 IKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 490
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+RI+AT GY+G +DV SLV
Sbjct: 491 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLV 550
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
+ LL QLA Q I+VNVYD TNAS P+ MYG D LL S LDFGD RKH+M C
Sbjct: 551 KKLLHQLASKQTIVVNVYDTTNASAPINMYG--TNVTDTGLLRISNLDFGDPARKHEMHC 608
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ QK PWTA+T + + VI LLVG+I + A I KVE D+ +M ELKVRAEAADVA
Sbjct: 609 RFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVA 668
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+D+ L + Q+DYA+TA GK LI+LINEVLD+A
Sbjct: 669 KSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQA 728
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELEAV F+LRA LD+VLSLFS KS KGIELAV++SD+VPEFV+GDPGRFRQI
Sbjct: 729 KIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQI 788
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ++GHIFV VHLA+ + D +DE L + V S +NTLS
Sbjct: 789 ITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQ--SLNIVHDSSNNSYNTLS 846
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G + SW+KFK L + + + I L+V VEDTG+GIP AQ
Sbjct: 847 GFPVVNRWKSWEKFKKLSCTDSMEETSII-------------KLLVTVEDTGVGIPSEAQ 893
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+FMPFMQADSSTSR YGGTGIGLSISK LV+LM G+I F S P GSTFSFT F K
Sbjct: 894 SRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTK- 952
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
E D KQ + F+ L+A+VVD + +RA VT+YHL RLGI V + S+ A S
Sbjct: 953 GETSLLDTKQQPHDPAGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACS 1012
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV---FKLPKLILLAT 797
N S ++LV+K+ W F+ L + +PNG V K PK+ LL T
Sbjct: 1013 YLSNNSDPSAST-SVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDT 1071
Query: 798 NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL 857
++S E ++ K+ GF D V+MKPLR S++ +C Q+V ++QA RG P LL
Sbjct: 1072 SLSSAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGKPLTLG---NLL 1128
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
R K+ILVVDDN VNR VA ALKK+GA V C S KAAL L+ PH FDACFMD+QMPEM
Sbjct: 1129 REKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEM 1188
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DGF AT+ IR+MESK NE++ +G S++ A H PILAMTADVI A +EC+KCGM
Sbjct: 1189 DGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKCGM 1248
Query: 978 DGYVSKPFEEENLYRELAKFFKS 1000
DGYV+KPFEE+ LY +A FF+S
Sbjct: 1249 DGYVAKPFEEDQLYSAVAHFFES 1271
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHV 93
R W K L+LW++G+ I + + + + RKE +C+++AR+L + FNV+ N +
Sbjct: 61 RKWRRKFLLLWLLGV-IIGLICFLSVLNAGALSRKEKTPDLCEEKARILLEHFNVSKNQL 119
Query: 94 HALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHG 153
H+L L + DQ E T FE P + +A A +V +Q ++FE+QH
Sbjct: 120 HSLASLFAES---------DQIASLECTKEAGFEMPPGNAIACALKVPCSQNQEFEKQHD 170
Query: 154 MTITTMK-SEPSPIRDEYAP 172
+++ ++ P+RDE P
Sbjct: 171 QAAESLEPNDQCPVRDENIP 190
>gi|190148355|gb|ACE63260.1| histidine kinase 2 [Betula pendula]
Length = 1260
Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/984 (56%), Positives = 683/984 (69%), Gaps = 49/984 (4%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L+L+++ +S+ ++ M++E +RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 306 WRKKFLLLFVLNGITMSIWLFWYMNQEIILRREETLANMCDERARMLQDQFNVSMNHVHA 365
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ K+PSA+DQ TF EYT RTAFERPL SGVAYA +V + REQFERQHG T
Sbjct: 366 LAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVPHSMREQFERQHGWT 425
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+DEYAPV+F QE +SH+ S+DMMSG+EDR+NILRA
Sbjct: 426 IKKMETEDQTLVQECIPENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRDNILRA 485
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RATGK VLT PF+LL S+HLGVVLTF VY + LPP +T E+RI+AT GY+G +DV SLV
Sbjct: 486 RATGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEKRIEATVGYLGASYDVPSLV 545
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I+VNVYD T+AS P+ MYG D LLH S LDFGD RKH+M C
Sbjct: 546 EKLLHQLASKQMIVVNVYDTTDASSPINMYG--TDVTDTGLLHTSNLDFGDPLRKHEMHC 603
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ QK PWTA+ + L VI LLVG+I Y A I KVEDD+ KM ELKVRAEAADVA
Sbjct: 604 RFKQKPPLPWTAINASVGLLVITLLVGHIFYAAISRIAKVEDDYRKMMELKVRAEAADVA 663
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+DT+L + Q+DYA+TA GK LI+LINEVLDRA
Sbjct: 664 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAIQQDYAETAHASGKDLISLINEVLDRA 723
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELEAV F+LRA+LD+V SL S KS + +ELAV+VS++VPE ++GDPGRFRQI
Sbjct: 724 KIESGRLELEAVPFDLRAVLDNVSSLLSGKSYDIRMELAVYVSNRVPEVIIGDPGRFRQI 783
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT + GHI + VHLA+ D DE + G + V +NTLS
Sbjct: 784 ITNLVGNSIKFTRDTGHILISVHLADEVNGGPDMMDEVMRQGLS--SVHEMSDKTYNTLS 841
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G D SW+ FK L N M E + L+V VEDTG+GIPL AQ
Sbjct: 842 GFRVVDRWKSWEHFKKL----------GCRNSMEE---PEMIKLLVTVEDTGVGIPLEAQ 888
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSI KCLV+LM G+I FVS P VGSTFSFT +F K
Sbjct: 889 SRIFTPFMQADSSTSRTYGGTGIGLSICKCLVDLMGGEIGFVSEPGVGSTFSFTGLFRKV 948
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
E D K + E +GL+A+V+D++ +RA VT+YHL RLGI ++ S+K A S
Sbjct: 949 -EVTTPDTKCQQYEPALSELRGLRALVIDKRIIRAEVTRYHLQRLGISSDITFSLKSACS 1007
Query: 741 TAKNGL-TSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV---FKLPKLILLA 796
+ TS KF ++L++KD W F+ L D N LPK+ LLA
Sbjct: 1008 YLSSACDTSVSAKFS--MVLIDKDVWDKETSLSFHLSLKDHGQNSRTEIPINLPKIFLLA 1065
Query: 797 TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGL 856
T+I +DE + K+ G D V++KPLR ++ ACLQ+ L +R+ R SS L
Sbjct: 1066 TSIGQDEHTELKSAGVVDNVLIKPLRLGVLGACLQEAL---GRRKVNR---KKSSTLGSL 1119
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
LR K+ILVVDDN VNR VA GALKK+GA V C S KAAL L+ PH FDACFMD+QMPE
Sbjct: 1120 LREKRILVVDDNAVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPE 1179
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDGFEATRRIR +ES+ANE++ +S + H PILAMTADVIH++ +EC+KCG
Sbjct: 1180 MDGFEATRRIRSLESEANEEV----ASREMFGNVAYWHTPILAMTADVIHSSNEECMKCG 1235
Query: 977 MDGYVSKPFEEENLYRELAKFFKS 1000
MD YVSKPFEE LY +A+FF+S
Sbjct: 1236 MDDYVSKPFEEGQLYSAVARFFES 1259
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 31 QSNRAWLPKALVLW-IMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
S R W K L LW I+ + S+ ++ ++ + K++ CD +A++L FNV+
Sbjct: 58 NSVRKWRRKLLFLWLIVVITLGSIWVFSSLNA-GTLTGKDMTPDSCDGKAQILLQHFNVS 116
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
+ +HAL L S DQ T + + + PL + +A A R+ + ++F
Sbjct: 117 NSQLHALASLFSES---------DQITSLQCSKNLGPKMPLSNSIACALRLPCSDMQEFH 167
Query: 150 RQHGMTITTMKSEPS---PIRDEYAPVMF 175
+QH EP +RDE+ P F
Sbjct: 168 KQHRWIAEN--DEPKDQCSVRDEFIPRKF 194
>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
Length = 1039
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/989 (55%), Positives = 684/989 (69%), Gaps = 55/989 (5%)
Query: 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHV 93
+ W K L W++ +S+ I+ + + +RKE LGSMCD+RARMLQDQFNV++NHV
Sbjct: 82 KTWWRKLLFTWVLMWIMVSLWIFSYLSLQASEKRKETLGSMCDERARMLQDQFNVSMNHV 141
Query: 94 HALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHG 153
A++IL+STFH+ KNPSA+DQ TFA YT RTAFERPL SGVAYA RV+ ++REQFE+Q G
Sbjct: 142 QAMSILISTFHHGKNPSAIDQGTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQG 201
Query: 154 MTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDREN 197
TI M + EPSP+++EYAPV+F Q+ +SHV SLDM+SG+EDREN
Sbjct: 202 WTIKRMDTPEQTPVHEDNHASENLEPSPVQEEYAPVIFAQDTVSHVISLDMLSGKEDREN 261
Query: 198 ILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDV 257
+LRARA+GKAVLT PFRL ++ LGV+LTF VYKS L +T ERI+AT GY+GG F +
Sbjct: 262 VLRARASGKAVLTAPFRLFKTNSLGVILTFAVYKSDLLSNATPNERIQATHGYLGGVFHI 321
Query: 258 ESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKH 317
ESLVE LL QLA Q ILVNVYD T+ P+ MYG D L H S L+FGD FRKH
Sbjct: 322 ESLVEKLLQQLASKQTILVNVYDTTDTDHPISMYGSNVSDD--GLQHVSALNFGDPFRKH 379
Query: 318 KMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEA 377
+M CR+ QKA PW A+TT+ + VI LLVG+I + I KVE+D+ M LK RAEA
Sbjct: 380 EMRCRFKQKAPWPWLAITTSTGILVIALLVGHIFHATVNRIAKVEEDYRDMMMLKKRAEA 439
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
ADVAKSQFLATVSHEIRTPMNG+LGML +L+DTDL TQ+DY +TAQ GKAL++LINEV
Sbjct: 440 ADVAKSQFLATVSHEIRTPMNGVLGMLHMLIDTDLDVTQQDYVRTAQASGKALVSLINEV 499
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD+AKIE+ KLELE + F+L+AILDDVLSLFS KS+ KG+ELAV++SD+VP+ ++GDPGR
Sbjct: 500 LDQAKIESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVELAVYISDRVPKMLIGDPGR 559
Query: 498 FRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFN 557
FRQIITNL+GNS+KFTE+GHIFV +HL E M + + E + N
Sbjct: 560 FRQIITNLMGNSIKFTEKGHIFVTIHLVEELMDSIEVETE---------------SSSKN 604
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
TLSGL AD R SW+ F+ + EG S S + S+ + L+V VEDTG+GIP
Sbjct: 605 TLSGLPVADRRCSWEGFR-TFNQEGLTSPFSSSS-------SDLIHLIVSVEDTGVGIPE 656
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
AQ RVF PFMQ S SR +GGTGIGLSISKCLV LM G+I FVSRP VGSTF+FTAVF
Sbjct: 657 EAQSRVFTPFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRPNVGSTFTFTAVF 716
Query: 678 ----GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
K EY + ++S + F+G+ A+VVD PVRA V++YH+ RLGI V+++S
Sbjct: 717 SGGCSKSNEYKCQP-TNNQSNAVSSEFQGMAALVVDPNPVRAKVSRYHIQRLGIRVEVTS 775
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+ S+ +G T+ +++LVE+D W +DS +A + + PKL
Sbjct: 776 DLNQVFSSISSGNTAI------NMVLVEQDVW--DKDSNLSALFGNKLKKLDLEVPPKLF 827
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
LLA +IS A +G + TVIMKPLRASM+AA LQ+ L NK G S
Sbjct: 828 LLANSISSTRNSAAISGVYNPTVIMKPLRASMLAASLQRALGVGNKGVCQNGEHPSLSL- 886
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
+ LLRG+KILVVDDN VN VAAGALKK+GA V CA S K+A+ L+ PH FDACFMDIQ
Sbjct: 887 RNLLRGRKILVVDDNNVNLRVAAGALKKYGADVVCADSGKSAIPLLKPPHDFDACFMDIQ 946
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDGFEAT IR+ME N ++ +G SV+ A HLPILAMTADVI AT +ECL
Sbjct: 947 MPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQATHEECL 1006
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+CGMDGYVSKPFE E LYRE+++FF+ P
Sbjct: 1007 RCGMDGYVSKPFEAEQLYREVSRFFQPPP 1035
>gi|413933250|gb|AFW67801.1| putative histidine kinase family protein [Zea mays]
Length = 966
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/924 (59%), Positives = 656/924 (70%), Gaps = 56/924 (6%)
Query: 114 QDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPV 173
Q+TFA+YT RT+FERPLLSGVAYA RVV A RE FER G I TMK EPSP +DEYAPV
Sbjct: 54 QNTFADYTARTSFERPLLSGVAYAQRVVHADREGFERHQGWIIKTMKHEPSPAQDEYAPV 113
Query: 174 MFYQEPMSHVKSLDMMSGE---------------------------------EDRENILR 200
++ QE +S+++ LDMMSGE EDRENILR
Sbjct: 114 VYSQETVSYIEGLDMMSGEVCGDVSRSFLADGLQLFSAGVGSEPGCVSVVLQEDRENILR 173
Query: 201 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
+RA+GKAVLTRPFRL+ S+HLGVVLTFPVY + LP + E+R+ ATAGY+GG FDVESL
Sbjct: 174 SRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYLGGAFDVESL 232
Query: 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMI 320
VENLL QLAGNQ ++VNVYD+TN S+PL+MYG + G+ S H LDFGD FRKH M+
Sbjct: 233 VENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSPSHICMLDFGDPFRKHHMV 292
Query: 321 CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV 380
CRY K PW+A++T +FVI +LVGYI A V++D KM+ELK +AEAADV
Sbjct: 293 CRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRKMEELKKQAEAADV 352
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLATVSHEIRTPMNG+LGML +LLDTDL+STQRD+AQTAQ+CGKALI+LINEVLDR
Sbjct: 353 AKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDR 412
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
AKIEARKL+LE+V F+LR+ILDDV+SLFS KSR KGIEL V+VS++VPE +LGDPGRFRQ
Sbjct: 413 AKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQ 472
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL---LNGGTEEGVCRSGTGQFN 557
IITNLVGNS+KFTERGHIFV+VHLA+ + + T++K E + +NG T+E + + N
Sbjct: 473 IITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTDEKTAVATSVSLN 532
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
TLSG EAAD RNSW+ FK L+ E N M S+ VTL+V VEDTGIGIPL
Sbjct: 533 TLSGFEAADSRNSWENFKLLLSYEK--------NEMPYESVSDKVTLVVSVEDTGIGIPL 584
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
AQ +VF PFMQADSSTSR YGGTGIGLSISKCLVELM GQI+FVSRP VGSTF+FTAV
Sbjct: 585 DAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAVL 644
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD 737
+C D K LP FKGL A++VD +PVRA VT+YHL RLGI + ++I+
Sbjct: 645 KRCDRSAIGDSKPVMLHPLPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIEL 704
Query: 738 ASS--TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILL 795
A + +NG + + K QP ++L+E D W D ++LL+ K NGH LPK+ILL
Sbjct: 705 ALGVLSGRNGSSLTSMK-QPCMLLIESDSWGFNIDVSLRSRLLEMKQNGHTHVLPKIILL 763
Query: 796 ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQG 855
A E K K D+VI KPL+AS +AACL Q L K+ + N S + G
Sbjct: 764 AAA----ESGKLKEHYAVDSVITKPLKASALAACLFQTLGI--KQSSNERSDNSGSLY-G 816
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
LL GK ILVVDDN VN VAAG LKKFGA VEC S K AL LQ P+ F C MDIQMP
Sbjct: 817 LLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQMP 876
Query: 916 EMDGFEATRRIRQMESKANEQMMN-GGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
EMDGFEAT++IR ME+KANEQ + S +DG + LP+LAMTADVI AT +EC K
Sbjct: 877 EMDGFEATKQIRAMEAKANEQAVACDNSEIDGATRAARWRLPVLAMTADVIQATHEECTK 936
Query: 975 CGMDGYVSKPFEEENLYRELAKFF 998
CGMDGYV+KPFEE+ L++ L KF
Sbjct: 937 CGMDGYVTKPFEEKQLFQALQKFL 960
>gi|255547688|ref|XP_002514901.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223545952|gb|EEF47455.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1005
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/995 (53%), Positives = 676/995 (67%), Gaps = 62/995 (6%)
Query: 27 YTFIQSNRA---WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQ 83
Y +I S R W K L+ W++G +S+ I+ M + +RKE L SMCD+RARMLQ
Sbjct: 44 YQYIGSKRVRKTWWRKLLMAWVIGWIMVSLWIFWYMSSQATEKRKEALASMCDERARMLQ 103
Query: 84 DQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDA 143
DQFNV++NHV A++IL+STFH+ KNPSA+DQ TFA YT RTAFERPL SGVAYA RV+ +
Sbjct: 104 DQFNVSMNHVQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHS 163
Query: 144 QREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLD 187
+REQFERQ G TI M + EPSPI++EYAPV+F Q+ +SHV S+D
Sbjct: 164 EREQFERQQGWTIKKMDTLEQNPVHKDDYIPELLEPSPIQEEYAPVIFAQDTISHVVSID 223
Query: 188 MMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKAT 247
M+SG+EDREN+LRAR +G VLT PFRLL ++ LGV+LTF VYK LP +T ERI+AT
Sbjct: 224 MLSGKEDRENVLRARESGTGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQAT 283
Query: 248 AGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESE 307
GY+GG FD+ESLVE LL QLA Q ILV+VYD TN S P+ MYG D L H S
Sbjct: 284 DGYLGGVFDIESLVEKLLQQLASKQTILVDVYDTTNESHPISMYGSNVSDN--GLQHVSA 341
Query: 308 LDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHK 367
L+FGD RKH+M CR+ QKA PW A+TT+ + VI LL+G+I + I KVEDD+H+
Sbjct: 342 LNFGDPHRKHEMHCRFKQKAPWPWLAITTSIGVLVIVLLIGHIFHATVNRIAKVEDDYHE 401
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M ELK RAEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQ G
Sbjct: 402 MMELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTNLDVTQQDYVRTAQASG 461
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL++LINEVLD+AKIE+ KLELE V FNLRAILDDVL LFSEK++ KG+ELAV++SD V
Sbjct: 462 KALVSLINEVLDQAKIESGKLELENVQFNLRAILDDVLPLFSEKAQVKGVELAVYISDSV 521
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
PE ++GDPGRFRQII NL+GNS+KFT +GH+FV VHL E + D +
Sbjct: 522 PELLIGDPGRFRQIIINLMGNSIKFTHQGHVFVTVHLVEEVIDSIDVE------------ 569
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+G+ NT+SG AD R SW F+ EG SN +++ S+ + L+V
Sbjct: 570 ---TGSSSRNTVSGFPVADRRRSWAGFR-TFSQEG--SNRALL------PSSDHINLIVS 617
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VEDTG GIPL AQ R+F+PFMQ STSR YGGTGIGLSISKCLV LM G+I FVS P++
Sbjct: 618 VEDTGEGIPLEAQPRIFIPFMQVGPSTSRKYGGTGIGLSISKCLVGLMNGEIGFVSIPRI 677
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQ---SKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
G+TF+FTAVF E Q S+S + F+G+ A++VD +PVRA V++YH+ R
Sbjct: 678 GTTFTFTAVFANGCSNTNECNSQKISSQSNTITSEFRGMTALIVDSRPVRAKVSRYHVQR 737
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
LG+ V++ S + A S+ +G +++L+E++ W +DS +A ++
Sbjct: 738 LGMHVEVVSDLNQALSSINSG------NILINVVLIEQEVW--DKDSSISALFVNNTRKI 789
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
PKL LLA +I+ + + + +VIMKPLRASM+AA LQ+ + NK A
Sbjct: 790 DHGVSPKLFLLANSINSSRANAVASAVYTPSVIMKPLRASMLAASLQRAMGVGNKGNAHN 849
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
G + LL G+KIL+VDDN VN VAAGALKK+GA V C S + A+ L PH
Sbjct: 850 GELS------NLLLGRKILIVDDNSVNLKVAAGALKKYGADVVCIESGEKAIKLLTPPHQ 903
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
FDACFMDIQMPEMDGFEATRRIR E + +G +V G H+PILAMTADV
Sbjct: 904 FDACFMDIQMPEMDGFEATRRIRDREHNFKNSIQSGDKTVGGYENLPNWHVPILAMTADV 963
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
I AT +EC KCGMDGYVSKPFE E LYRE++ FF+
Sbjct: 964 IQATHEECSKCGMDGYVSKPFEAEQLYREVSSFFQ 998
>gi|190148357|gb|ACE63261.1| histidine kinase 3 [Betula pendula]
Length = 1053
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/988 (54%), Positives = 673/988 (68%), Gaps = 57/988 (5%)
Query: 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHV 93
+ W K L+ W+ G +S+ I+ + + +RKE L SMCD+RARMLQDQFNV++NH+
Sbjct: 82 KEWWRKLLITWVFGWTIVSLWIFWYLSSQATEKRKESLASMCDERARMLQDQFNVSMNHI 141
Query: 94 HALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHG 153
A++I++S FH+ KNPSA+DQ TFA YT RTAFERPL SGVAYA RV+ ++REQFE+Q G
Sbjct: 142 QAMSIMISIFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQG 201
Query: 154 MTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDREN 197
TI M + EPSPI++EYAPV+F Q+ +SHV SLDM+SG+EDREN
Sbjct: 202 WTIKRMDTLEQNPVHEDDYAPEALEPSPIQEEYAPVIFAQDTISHVVSLDMLSGKEDREN 261
Query: 198 ILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDV 257
+L AR +GK VLT PF+LL ++ LGV+LTF VYK+ LP +T ERI+AT GY+GG FD+
Sbjct: 262 VLLARESGKGVLTAPFKLLKTNRLGVILTFAVYKTDLPSNATPNERIQATDGYLGGVFDI 321
Query: 258 ESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKH 317
ESLVE LL QLA Q ILVNVYD TN S P+ MYG D L H S L+FGD FRKH
Sbjct: 322 ESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSNVSDD--GLQHGSALNFGDPFRKH 379
Query: 318 KMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEA 377
+M CR+ QK PW A+TT+ + VI LLVGYI + I KVEDD KM ELK +AEA
Sbjct: 380 EMHCRFKQKPPWPWLAITTSIGILVIALLVGYIFHATVNRIAKVEDDCQKMTELKKQAEA 439
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
ADVAKSQFLATVSHEIRTPMNG+LGML +L+DTDL TQ+DY +TAQ GKAL++LINEV
Sbjct: 440 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQDYVRTAQDSGKALVSLINEV 499
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD+AKIE+ +LELEAV F+LRAILDDVLSLFS KS G+ELAV++SD+VPE ++GD GR
Sbjct: 500 LDQAKIESGRLELEAVQFDLRAILDDVLSLFSGKSPGNGVELAVYISDQVPEMLIGDAGR 559
Query: 498 FRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFN 557
FRQIITNL+GNS+KFTE+GHIFV VHL E + + + E+ N N
Sbjct: 560 FRQIITNLMGNSIKFTEKGHIFVTVHLVEEVIGSIEVETESSSN---------------N 604
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
TLSG AD ++SWD F+ F S + +S+ S+ + L+V VEDTG+GIP
Sbjct: 605 TLSGFPVADRKSSWDGFR------TFSQEGSTCPLSSSS--SDLINLIVSVEDTGVGIPR 656
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
AQ RVF PFMQ S SR +GGTGIGLSISKCLV LM+G+I FVS P GSTF+FTAVF
Sbjct: 657 EAQSRVFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSIPNTGSTFTFTAVF 716
Query: 678 GKC----KEYVFEDI-KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
EY I QSKS F+G+ A+VVD +PVRA V++YH+ RLGI V++
Sbjct: 717 TNASSHPNEYKSLQINNQSKSTS--SEFQGMTALVVDPRPVRAKVSRYHIQRLGIRVELV 774
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
+ + +G T+ D++LVE++ W DSG ++ + PKL
Sbjct: 775 PDLNQGFANISSGNTAI------DMVLVEQEVW--DRDSGIAVLFINKFKKSYSRIPPKL 826
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
LLA I + A + + VIMKPLRASM++A LQ+ + NK G GSS
Sbjct: 827 FLLANPIGSSKTRAATSDDYTPPVIMKPLRASMLSASLQRAMGVGNKGNPRNGELPGSSL 886
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
+ LL G+KIL+VDDN VN VAAGALKK+GA V CA S K A+ L+ PH FDACFMDI
Sbjct: 887 -RNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGKKAISLLKPPHHFDACFMDI 945
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMPE+DGFEATRRIR ME N + G SV+G H+PILAMTADVI AT +E
Sbjct: 946 QMPEIDGFEATRRIRDMEHNINNSIQRGEVSVEGPQTISNWHVPILAMTADVIQATHEES 1005
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+KCGMDGYVSKPFE + LYRE+++FF+S
Sbjct: 1006 IKCGMDGYVSKPFEAQQLYREVSRFFQS 1033
>gi|356525172|ref|XP_003531201.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1008 (53%), Positives = 687/1008 (68%), Gaps = 70/1008 (6%)
Query: 16 KVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMC 75
K+++Q IG ++ RA K L+ W++G +S+ I+ M + +RKE L SMC
Sbjct: 69 KIHQQYYQYIGSKKVK--RALWRKLLLTWVVGWFIVSLRIFCYMSSQGTEKRKETLASMC 126
Query: 76 DQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVA 135
D+RARMLQDQFNV++NH+ A++IL+STFH+ K+PSA+DQ TFA+YT RTAFERPL SGVA
Sbjct: 127 DERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERPLTSGVA 186
Query: 136 YAPRVVDAQREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEP 179
YA RV+ ++REQFE+Q G TI M + EPSP+++EYAPV+F Q+
Sbjct: 187 YAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDT 246
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
++HV S++++SG+EDREN+LRAR +GK VLT PFRLL ++ LGV+LTF VYK LP +T
Sbjct: 247 IAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNTT 306
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
ERI+AT GY+GG FDVESLVE LL QLA Q ++V+VYD TN + P+ MYG N+ GD
Sbjct: 307 PNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVHVYDTTNRTHPIAMYGS-NESGD 365
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
H S L+FGD FRKH+M CR+ QK PW A+TT+ + VI LLVGYI + I
Sbjct: 366 F-FYHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGYIFHATVNRIA 424
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDD+ +M ELK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTDL TQ++Y
Sbjct: 425 KVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEY 484
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+TAQ GKAL++LINEVLD+AKIE KLELEAVLF++RAILDDVLSLFSEKS+ K +EL
Sbjct: 485 VRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKRVEL 544
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AV+VSD VPE ++GDPGRFRQIITNL+GNS+KFT++GHIFV +HL E + + E
Sbjct: 545 AVYVSDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVDKE-- 602
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
+ NTLSG AD R SW+ FK S +S N +
Sbjct: 603 -------------SNSENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSNDL------ 643
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
V L+V VEDTG GIPL +Q +F PFMQ SS SR +GGTGIGLSISKCLV LM G+I
Sbjct: 644 --VNLIVSVEDTGEGIPLESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEI 701
Query: 660 SFVSRPQVGSTFSFTAVF-------GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKP 712
FVS P++GSTF+FTAVF +CK + QS S + F+G+ A+++D +
Sbjct: 702 GFVSIPKIGSTFTFTAVFTNGHRSSSECKIQQINNQPQSASSE----FEGMTALIIDPRS 757
Query: 713 VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG 772
VRA V+ YH+ RLGI V+M S +K ST NG +++L+E++ W D G
Sbjct: 758 VRAEVSGYHIQRLGIHVEMVSDLKQGLSTISNG------NVVVNMVLIEQEVW--DRDLG 809
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
++ ++ PKL +L N S G TVI KPLRASM+AA LQ+
Sbjct: 810 LSSHFVNNTRRIDHGVPPKLFILV-NSSSSFKASVNLGVHNPTVITKPLRASMLAASLQR 868
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ +NK R + + S H LLRG+KIL+VDDNGVNR VAAGALKK+GA V C +S
Sbjct: 869 AMGVQNKGAPHRELQSLSLRH--LLRGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSG 926
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
K A+ L+ PH FDACFMDIQMPEMDGFEAT+RIR+ME N ++ S+D
Sbjct: 927 KDAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMEDSVNREV-----SMDDFENITN 981
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
H+PILAMTADVI AT +ECL+CGMDGYVSKPFE E LYRE+++FF+S
Sbjct: 982 WHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQS 1029
>gi|224131798|ref|XP_002321181.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222861954|gb|EEE99496.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1234
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/982 (55%), Positives = 673/982 (68%), Gaps = 42/982 (4%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L+++++ +S+ ++ + E+ RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 276 WRKKLLIIFVLLGVLVSIWLFWHLHEKIISRREETLANMCDERARMLQDQFNVSMNHVHA 335
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ KNPSA+DQ TF EYT RT FERPL SGVAYA +V +R+QFE QHG T
Sbjct: 336 LAILVSTFHHGKNPSAIDQKTFGEYTKRTDFERPLTSGVAYALKVPHLERKQFEEQHGWT 395
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M +E P+PI+DEYAPV+F QE +SH+ S+DMMSG+EDRENILRA
Sbjct: 396 IKKMGTEDQTLVQDCIPDKLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 455
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LP +T E+RI AT GY+G +DV SLV
Sbjct: 456 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLP-DATPEQRIDATVGYLGASYDVPSLV 514
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QL+ Q I+VNVYD TNA+ P++MYG D LLH S LDFGD RKH+M C
Sbjct: 515 EKLLHQLSSKQTIVVNVYDTTNATAPILMYG--TDVTDTGLLHVSSLDFGDPLRKHEMHC 572
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PW A+ + L VI LLVG+I + A I KVE+D+ +M ELK RAEAADVA
Sbjct: 573 RFKHKPPLPWPAINASVGLLVITLLVGHIFHAAINRIAKVEEDYREMMELKARAEAADVA 632
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L++TDL Q DYA TA GK LIALINEVLD+A
Sbjct: 633 KSQFLATVSHEIRTPMNGVLGMLQMLMETDLDVNQMDYANTAHTSGKDLIALINEVLDQA 692
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE-LAVFVSDKVPEFVLGDPGRFRQ 500
KIE+ +LELEAV F+LR++LD+VLSLFS KS KGIE LAV+VSD++PE V+GDPGRFRQ
Sbjct: 693 KIESGRLELEAVPFDLRSVLDNVLSLFSGKSNEKGIEKLAVYVSDRLPEVVIGDPGRFRQ 752
Query: 501 IITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTL 559
IITNLVGNS+KFT ++GH+FV VHLA+ DA+D L G E V + + +++L
Sbjct: 753 IITNLVGNSIKFTRDKGHVFVSVHLADEVRSPLDARDAVLKQG--LELVQDTSSKVYDSL 810
Query: 560 SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
SG + SW+KFK +S I+ S E + L+V VEDTG+GIP A
Sbjct: 811 SGFPVVNRWKSWEKFK----------KSSCID---SRDEPEMIRLLVTVEDTGVGIPEDA 857
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
Q +F PFMQADSSTSR YGGTGIGLSISKCLV+LM G+I FVS +GSTFSF F K
Sbjct: 858 QGNIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSECGIGSTFSFIVSFRK 917
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
E D K + +G +A+V+DE+ VRA VT+YHL RLGI ++ S+K A
Sbjct: 918 -GESTSLDTKWQPYDPAVLEVRGGRALVIDERSVRAEVTKYHLQRLGITADVAPSLKSAC 976
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV---FKLPKLILLA 796
+ +G +S P I+L++KD W F+ L K N L K+ LLA
Sbjct: 977 AYLSSGYCTSIPADLP-IVLIDKDAWDKESGIAFHHLLKMPKKNDGTDIQVDLSKIFLLA 1035
Query: 797 TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGL 856
T IS DE + K G D V++KPLR S++ AC Q+ + K + R P Q L
Sbjct: 1036 TTISSDERLELKTSGLVDNVLVKPLRLSVLIACFQEAFGSGKKSEVNRKKPPAL---QNL 1092
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
LRGK+ILVVDDN VNR VA GALKK GA V C S KAAL+KL+ PH FDACFMD QMPE
Sbjct: 1093 LRGKQILVVDDNLVNRRVAEGALKKHGAIVTCVESGKAALEKLKPPHSFDACFMDFQMPE 1152
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDGFEATR+IR MES+ NE++ +G +S++ H PILAMTADVI AT +ECLKCG
Sbjct: 1153 MDGFEATRQIRSMESQFNEKIASGKASMELPGNVAYWHTPILAMTADVIQATNEECLKCG 1212
Query: 977 MDGYVSKPFEEENLYRELAKFF 998
MDGYVSKPFE+E LY + +FF
Sbjct: 1213 MDGYVSKPFEDEKLYNAVTRFF 1234
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 32 SNRAWLPKALVLWIMGMAFISMSIYR--GMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
S R W K L+LW +G+A SI+ D R+ + L S C++ A++L FNV+
Sbjct: 32 SARKWKRKFLLLWFLGVAVTIGSIWLLFSFDSGALGRKGQSLDS-CEEGAQVLLRHFNVS 90
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
N +HAL L S DQ + T E + G+A A +V +++++F+
Sbjct: 91 KNQLHALGSLFSDS---------DQVASLDCTKEPGPEMLINDGIACALKVPCSKKQEFQ 141
Query: 150 RQH 152
QH
Sbjct: 142 -QH 143
>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1008 (52%), Positives = 687/1008 (68%), Gaps = 70/1008 (6%)
Query: 16 KVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMC 75
K+++Q IG ++ RA K L+ W++G +S+ I+ M + +RKE L SMC
Sbjct: 69 KIHQQYYQYIGSKKVK--RALWRKILLTWVVGWFIVSLWIFSYMSLQGTEKRKETLASMC 126
Query: 76 DQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVA 135
D+RARMLQDQFNV++NH+ A++IL+STFH+ K+PSA+DQ TFA+YT RTAFERPL SGVA
Sbjct: 127 DERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERPLTSGVA 186
Query: 136 YAPRVVDAQREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEP 179
YA RV+ ++REQFE+Q G TI M + EPSP+++EYAPV+F Q+
Sbjct: 187 YAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDT 246
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
++HV S++++SG+EDREN+LRAR +GK VLT PFRLL ++ LGV+LTF VYK LP +T
Sbjct: 247 IAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNAT 306
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
ERI+AT GY+GG FDVESLVE LL QLA Q+++VNVYD TN + P+ MYG N+ GD
Sbjct: 307 PNERIQATDGYLGGVFDVESLVEKLLQQLASKQSVIVNVYDTTNHTHPIAMYGS-NESGD 365
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
+ H S L+FGD FRKH+M CR+ QK PW A+TT+ + VI LLVG+I + I
Sbjct: 366 V-FFHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGHIFHATVNRIA 424
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+VEDD+ K ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTDL TQ++Y
Sbjct: 425 EVEDDYRKEMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEY 484
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+TAQ GKAL++LINEVLD+AKIE KLELEAVLF++RAILDDVLSLFSEKS+ KG+EL
Sbjct: 485 VRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVEL 544
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AV+VSD VPE ++GDPGRFRQIITNL+GNS+KFT++GHIFV +HL E + + E
Sbjct: 545 AVYVSDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVDKE-- 602
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
+ NTLSG AD R SW+ FK F + + S+ S
Sbjct: 603 -------------SNSENTLSGSPVADSRRSWEGFK------AFSQEGPLGSF--SSPSS 641
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ V L+V VEDTG GIPL +Q ++ PFMQ S SR +GGTGIGLSISKCLV LM G+I
Sbjct: 642 DLVNLIVSVEDTGEGIPLESQPLIYTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEI 701
Query: 660 SFVSRPQVGSTFSFTAVF-------GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKP 712
FVS P+ GSTF+FTAVF +CK + S S + F+G+ A+++D +
Sbjct: 702 GFVSIPKTGSTFTFTAVFTNGHCSSNECKVQQINNQPHSASSE----FEGMTALIIDPRS 757
Query: 713 VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG 772
VRA V++YH+ RLGI V+M S +K ST NG +++L+E++ W D G
Sbjct: 758 VRAKVSRYHIQRLGIHVEMVSDLKQGLSTISNG------NIIINMVLIEQEVW--DRDLG 809
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
++ ++ PKL +L N S G VI KPLRASM+AA LQ+
Sbjct: 810 LSSHFVNNTRRIDQGVPPKLFIL-VNSSSSFKASVNLGVHNPIVITKPLRASMLAASLQR 868
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ +NK R + + S H LLRG+KIL+VDDN VNR VAAGALKK+GA V C +S
Sbjct: 869 AMGVQNKGAPHRELQSLSLRH--LLRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSG 926
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
K A+ L+ PH FDACFMDIQMPEMDGFEAT+R+R+ME N ++ S+D
Sbjct: 927 KDAISSLKPPHQFDACFMDIQMPEMDGFEATKRVREMEDSVNREV-----SMDDFENITN 981
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
H+PILAMTADVIHAT +ECLK GMDGYVSKPFE E LYRE+++FF+S
Sbjct: 982 WHVPILAMTADVIHATHEECLKWGMDGYVSKPFEAEQLYREVSRFFQS 1029
>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
Length = 1203
Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/987 (54%), Positives = 669/987 (67%), Gaps = 90/987 (9%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L+++++ IS+ ++ ++++ +RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 284 WRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHA 343
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ K+PSA+DQ TF EYT RTAFERPL SGVAYA +V+ ++RE FE++HG T
Sbjct: 344 LAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWT 403
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E PSPI+DEYAPV+F QE +SH+ S+DMMSG+EDRENILRA
Sbjct: 404 IKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 463
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+RI+AT GY+G +DV SLV
Sbjct: 464 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLV 523
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
+ LL QLA Q I+VNVYD TNAS P+ MYG D LL S LDFGD RKH+M C
Sbjct: 524 KKLLHQLASKQTIVVNVYDTTNASAPINMYG--TNVTDTGLLRISNLDFGDPARKHEMHC 581
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ QK PWTA+T + + VI LLVG+I + A I KVE D+ +M ELKVRAEAADVA
Sbjct: 582 RFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVA 641
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+D+ L + Q+DYA+TA GK LI+LINEVLD+A
Sbjct: 642 KSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQA 701
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELEAV F+LRA LD+VLSLFS KS KGIELAV++SD+VPEFV+GDPGRFRQI
Sbjct: 702 KIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQI 761
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVK----TDAKDETLLNGGTEEGVCRSGTGQF 556
ITNLVGNS+KFT ++GHIFV VHLA+ K TD+ +ET
Sbjct: 762 ITNLVGNSIKFTHDKGHIFVSVHLADEVKFKKLSCTDSMEET------------------ 803
Query: 557 NTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIP 616
SII ++ + VEDTG+GIP
Sbjct: 804 -------------------------------SIIKLLVT------------VEDTGVGIP 820
Query: 617 LSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676
AQ R+FMPFMQADSSTSR YGGTGIGLSISK LV+LM G+I F S P GSTFSFT
Sbjct: 821 SEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVA 880
Query: 677 FGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK 736
F K E D KQ + F+ L+A+VVD + +RA VT+YHL RLGI V + S+
Sbjct: 881 FTK-GETSLLDTKQQPHDPAGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLI 939
Query: 737 DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV---FKLPKLI 793
A S N S ++LV+K+ W F+ L + +PNG V K PK+
Sbjct: 940 SACSYLSNNSDPSAST-SVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIF 998
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
LL T++S E ++ K+ GF D V+MKPLR S++ +C Q+V ++QA RG P
Sbjct: 999 LLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGKPLTLG-- 1056
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
LLR K+ILVVDDN VNR VA ALKK+GA V C S KAAL L+ PH FDACFMD+Q
Sbjct: 1057 -NLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQ 1115
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDGF AT+ IR+MESK NE++ +G S++ A H PILAMTADVI A +EC+
Sbjct: 1116 MPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECM 1175
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKS 1000
KCGMDGYV+KPFEE+ LY +A FF+S
Sbjct: 1176 KCGMDGYVAKPFEEDQLYSAVAHFFES 1202
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHV 93
R W K L+LW++G+ I + + + + RKE +C+++AR+L + FNV+ N +
Sbjct: 34 RKWRRKFLLLWLLGV-IIGLICFLSVLNAGALSRKEKTPDLCEEKARILLEHFNVSKNQL 92
Query: 94 HALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHG 153
H+L L + DQ E T FE P + +A A +V +Q ++FE+QH
Sbjct: 93 HSLASLFAES---------DQIASLECTKEAGFEMPPGNAIACALKVPCSQNQEFEKQHD 143
Query: 154 MTITTMK-SEPSPIRDEYAP 172
+++ ++ P+RDE P
Sbjct: 144 QAAESLEPNDQCPVRDENIP 163
>gi|297805122|ref|XP_002870445.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
lyrata]
gi|297316281|gb|EFH46704.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
lyrata]
Length = 1176
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/980 (54%), Positives = 667/980 (68%), Gaps = 52/980 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W L+L I+G S+ + +EE ++R+E L +MCD+RAR+LQDQFNV++NHVHA
Sbjct: 231 WRKNILLLGILGGVSFSVWWFWNTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHA 290
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L+ILVSTFH+ K PSA+DQ TF EYT RT FERPL SGVAYA +V ++RE+FE++HG T
Sbjct: 291 LSILVSTFHHGKTPSAIDQKTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWT 350
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+ EYAPV+F QE +SH+ S+DMMSGEEDRENILRA
Sbjct: 351 IKKMETEDQTVVQDCVPENFDPAPIQAEYAPVIFAQETVSHIVSVDMMSGEEDRENILRA 410
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S++LGVVLTF VY + LPP +T E+R+ AT GY+G +D+ SLV
Sbjct: 411 RASGKGVLTSPFKLLKSNNLGVVLTFAVYDTSLPPDATEEQRVGATIGYLGASYDMPSLV 470
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I V+VYD TN S + MYG ++ GD+S H S LDFGD R H+M C
Sbjct: 471 EKLLHQLASKQTIAVDVYDTTNTSGLIKMYG--SEIGDISEQHISSLDFGDPSRNHEMHC 528
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PWTA+TT+ + VI LVGYI A I VE+D KM+ELK RAEAADVA
Sbjct: 529 RFKHKLPIPWTAITTSILVLVITFLVGYIFNEAINRIATVEEDCQKMRELKARAEAADVA 588
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+DTDL + Q DYAQTA GK L +LINEVLD+A
Sbjct: 589 KSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQA 648
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELE V F++R ILD+V SL S K+ KGIELAV+VS +VP+ V+GDP RFRQI
Sbjct: 649 KIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQI 708
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ERGHIF+ VHLA + +D +L G SG T+S
Sbjct: 709 ITNLVGNSIKFTQERGHIFISVHLAAEVREPLNIED-AVLKQRLALGCSESG----ETVS 763
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G A + SW FK E N S+ + L+V VEDTG+GIP+ AQ
Sbjct: 764 GFPAVNAWGSWKNFKTCYSTE--------------NHNSDKIKLLVTVEDTGVGIPVDAQ 809
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSISK LVELM+G++ FVS P +GSTFSFT VFGK
Sbjct: 810 GRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTVVFGKA 869
Query: 681 KEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ I + + DL FKGL+A+V+D + +RA VT YHL RLGI + SS++ A
Sbjct: 870 QTNT--SITKLERFDLAIQEFKGLRALVIDNRNIRAEVTSYHLQRLGISADIVSSLRMAC 927
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
TS ++L++KD W + +D +L + ++PK+ILLAT+
Sbjct: 928 -------TSVSKLENLAMVLIDKDAW-NKKDFSVLDELFT-RSKVTFTRVPKIILLATSA 978
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRG 859
+ E + K+ G D V++KPLR S++ CLQ+ L KRQ R N LLR
Sbjct: 979 TLTERSEMKSSGLIDEVVIKPLRMSVLICCLQETLVNGKKRQPNRKRRNLGH----LLRE 1034
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+ILVVDDN VNR VA GALKK+GA V C S KAAL L+ PH FDACFMD+QMPEMDG
Sbjct: 1035 KQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDG 1094
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
FEATRR+R +E + N+++ +G S + K H+PILAMTADVI AT +EC+KCGMDG
Sbjct: 1095 FEATRRVRDLEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDG 1154
Query: 980 YVSKPFEEENLYRELAKFFK 999
YVSKPFEEE LY +A+FF+
Sbjct: 1155 YVSKPFEEEVLYTAVARFFE 1174
>gi|18421494|ref|NP_568532.1| histidine kinase 2 [Arabidopsis thaliana]
gi|75168995|sp|Q9C5U2.1|AHK2_ARATH RecName: Full=Histidine kinase 2; AltName: Full=Arabidopsis histidine
kinase 2; Short=AtHK2; AltName: Full=Protein AUTHENTIC
HIS-KINASE 2
gi|13537196|dbj|BAB40774.1| histidine kinase [Arabidopsis thaliana]
gi|332006631|gb|AED94014.1| histidine kinase 2 [Arabidopsis thaliana]
Length = 1176
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/981 (54%), Positives = 670/981 (68%), Gaps = 53/981 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W L+L I+G S+ + +EE ++R+E L +MCD+RAR+LQDQFNV++NHVHA
Sbjct: 230 WRKNILLLGILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHA 289
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L+ILVSTFH+ K PSA+DQ TF EYT RT FERPL SGVAYA +V ++RE+FE++HG
Sbjct: 290 LSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWA 349
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+DEYAPV+F QE +SH+ S+DMMSGEEDRENILRA
Sbjct: 350 IKKMETEDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENILRA 409
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+R++AT GY+G +D+ SLV
Sbjct: 410 RASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPSLV 469
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I V+VYD TN S + MYG ++ GD+S H S LDFGD R H+M C
Sbjct: 470 EKLLHQLASKQTIAVDVYDTTNTSGLIKMYG--SEIGDISEQHISSLDFGDPSRNHEMHC 527
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PWTA+T + + VI LVGYILY A I VE+D KM+ELK RAEAAD+A
Sbjct: 528 RFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAADIA 587
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+DTDL + Q DYAQTA GK L +LINEVLD+A
Sbjct: 588 KSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQA 647
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELE V F++R ILD+V SL S K+ KGIELAV+VS +VP+ V+GDP RFRQI
Sbjct: 648 KIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQI 707
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ERGHIF+ VHLA+ +D +L G SG T+S
Sbjct: 708 ITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIED-AVLKQRLALGCSESG----ETVS 762
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G A + SW FK E + S+ + L+V VEDTG+GIP+ AQ
Sbjct: 763 GFPAVNAWGSWKNFKTCYSTE--------------SQNSDQIKLLVTVEDTGVGIPVDAQ 808
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSISK LVELM+G++ FVS P +GSTFSFT VFGK
Sbjct: 809 GRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKA 868
Query: 681 KEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ I + + DL F GL+A+V+D + +RA VT+Y L RLGI + SS++ A
Sbjct: 869 ETNT--SITKLERFDLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMAC 926
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
+ + L + +IL++KD W E S + K ++PK+ LLAT+
Sbjct: 927 TCCISKLENLA------MILIDKDAWNKEEFSVLDELFTRSKVT--FTRVPKIFLLATSA 978
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQG-LLR 858
+ E + K+ G D V++KPLR S++ CLQ+ L KRQ PN + G LLR
Sbjct: 979 TLTERSEMKSTGLIDEVVIKPLRMSVLICCLQETLVNGKKRQ-----PNRQRRNLGHLLR 1033
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K+ILVVDDN VNR VA GALKK+GA V C S KAAL L+ PH FDACFMD+QMPEMD
Sbjct: 1034 EKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMD 1093
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
GFEATRR+R++E + N+++ +G S + K H+PILAMTADVI AT +EC+KCGMD
Sbjct: 1094 GFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMD 1153
Query: 979 GYVSKPFEEENLYRELAKFFK 999
GYVSKPFEEE LY +A+FF+
Sbjct: 1154 GYVSKPFEEEVLYTAVARFFE 1174
>gi|190148361|gb|ACE63263.1| histidine kinase 3B [Populus trichocarpa]
Length = 1019
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1004 (53%), Positives = 673/1004 (67%), Gaps = 82/1004 (8%)
Query: 27 YTFIQSNR---AWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQ 83
Y +I S R W K LV WI+G +S+ I+ M + +RKE L SMCD+RARMLQ
Sbjct: 72 YQYIGSKRIRKTWWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLASMCDERARMLQ 131
Query: 84 DQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDA 143
DQFNV++NHV A++IL+STFH+ KNPSA+DQ TFA YT RTAFERPL SGVAYA RV+ +
Sbjct: 132 DQFNVSMNHVQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVMHS 191
Query: 144 QREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLD 187
+REQFE Q G TI M + EPSPI++EYAPV+F Q+ ++HV SLD
Sbjct: 192 EREQFENQQGWTIKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFAQDTVAHVVSLD 251
Query: 188 MMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKAT 247
M+SG EDREN+LRARA+GK VLT PFRLL ++ LGV+LTF VYK+ LP + ERI+AT
Sbjct: 252 MLSGTEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNAMPNERIQAT 311
Query: 248 AGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESE 307
GY+GG FD+ESLVE LL QLA Q ILVNVYD+TN S P+ MYG D L H S
Sbjct: 312 DGYLGGIFDIESLVEKLLQQLASKQTILVNVYDITNQSHPISMYGSNVSDD--GLEHVSA 369
Query: 308 LDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHK 367
L+FGD FRKH+M CR+ QK PW A+TT+ + VI LL+GYI + I KVEDD+++
Sbjct: 370 LNFGDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRIAKVEDDYNE 429
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M ELK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L +TQ+DY +TAQ G
Sbjct: 430 MMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDATQQDYVRTAQDSG 489
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL++LINEVLD+AKIE+ K+ELEA+ F+LRAI+D+VL+LFS K+ KG+ELAV+VSD V
Sbjct: 490 KALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYVSDGV 549
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
PE ++GDPGRFRQIITNL+GNS+KFT++GHIF+ VHL E M D + E
Sbjct: 550 PEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETE---------- 599
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ NTLSGL AD SW FK + EG S + S+ + L+V
Sbjct: 600 -----SSSRNTLSGLPVADRCRSWVGFKTF-NPEGSSHTLSPSS-------SDLINLIVS 646
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VEDTG GIPL AQ RVF PFMQ D S SR YGGTGIGLSISKCLV LM G I FVS P +
Sbjct: 647 VEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIPDI 706
Query: 668 GSTFSFTAVFGK-CKEYVFEDIK----QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
GSTF+FTAVF C ++ ++++ + F+G+ A+VVD KPVRA V++Y +
Sbjct: 707 GSTFTFTAVFSNGCSNSNDSKLQKQRLKTQTNTMSSKFQGMTALVVDPKPVRAKVSRYQI 766
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
RLGI V++ + S+ N E+K +++ +E++ W +DS +A ++ K
Sbjct: 767 QRLGIHVELVLDLNQGLSSISN-----ENKV-VNMVFIEQEVW--DKDSSISALFVN-KL 817
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
V + + L N + A +G + +VI KPL+ASM+AA LQ+ + NK
Sbjct: 818 QKIVSGVSTKLFLLGNSLSSRTNTATSGVYTPSVITKPLKASMLAASLQRAMGG-NKGNP 876
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
G S + LL G+K+L+VDDN VN MVAA ALKK+GA V CA S + A+ L+ P
Sbjct: 877 CNGEHPSLSLRK-LLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLKPP 935
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H FDACFMDIQMPEMDGFEATRRIR MES H+PILAMTA
Sbjct: 936 HKFDACFMDIQMPEMDGFEATRRIRDMESN--------------------WHIPILAMTA 975
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
DVI AT++EC +CGMDGYVSKPFE E LY E+++F +P S A
Sbjct: 976 DVIQATYEECQRCGMDGYVSKPFEAEQLYHEVSRFL--QPTSSA 1017
>gi|9758650|dbj|BAB09274.1| histidine kinase-like protein [Arabidopsis thaliana]
Length = 1173
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/980 (53%), Positives = 669/980 (68%), Gaps = 54/980 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W L+L I+G S+ + +EE ++R+E L +MCD+RAR+LQDQFNV++NHVHA
Sbjct: 230 WRKNILLLGILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHA 289
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L+ILVSTFH+ K PSA+DQ TF EYT RT FERPL SGVAYA +V ++RE+FE++HG
Sbjct: 290 LSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWA 349
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+DEYAPV+F QE +SH+ S+DMMSGEEDRENILRA
Sbjct: 350 IKKMETEDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENILRA 409
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+R++AT GY+G +D+ SLV
Sbjct: 410 RASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPSLV 469
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I V+VYD TN S + MYG ++ GD+S H S LDFGD R H+M C
Sbjct: 470 EKLLHQLASKQTIAVDVYDTTNTSGLIKMYG--SEIGDISEQHISSLDFGDPSRNHEMHC 527
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PWTA+T + + VI LVGYILY A I VE+D KM+ELK RAEAAD+A
Sbjct: 528 RFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAADIA 587
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+DTDL + Q DYAQTA GK L +LINEVLD+A
Sbjct: 588 KSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQA 647
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ +LELE V F++R ILD+V SL S K+ KGIELAV+VS +VP+ V+GDP RFRQI
Sbjct: 648 KIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQI 707
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
ITNLVGNS+K ERGHIF+ VHLA+ +D +L G SG T+SG
Sbjct: 708 ITNLVGNSIK--ERGHIFISVHLADEVKEPLTIED-AVLKQRLALGCSESG----ETVSG 760
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
A + SW FK E + S+ + L+V VEDTG+GIP+ AQ
Sbjct: 761 FPAVNAWGSWKNFKTCYSTE--------------SQNSDQIKLLVTVEDTGVGIPVDAQG 806
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
R+F PFMQADSSTSR YGGTGIGLSISK LVELM+G++ FVS P +GSTFSFT VFGK +
Sbjct: 807 RIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKAE 866
Query: 682 EYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
I + + DL F GL+A+V+D + +RA VT+Y L RLGI + SS++ A +
Sbjct: 867 TNT--SITKLERFDLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMACT 924
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS 800
+ L + +IL++KD W E S + L + ++PK+ LLAT+ +
Sbjct: 925 CCISKLENLA------MILIDKDAWNKEEFSVLDE--LFTRSKVTFTRVPKIFLLATSAT 976
Query: 801 KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQG-LLRG 859
E + K+ G D V++KPLR S++ CLQ+ L KRQ PN + G LLR
Sbjct: 977 LTERSEMKSTGLIDEVVIKPLRMSVLICCLQETLVNGKKRQ-----PNRQRRNLGHLLRE 1031
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+ILVVDDN VNR VA GALKK+GA V C S KAAL L+ PH FDACFMD+QMPEMDG
Sbjct: 1032 KQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDG 1091
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
FEATRR+R++E + N+++ +G S + K H+PILAMTADVI AT +EC+KCGMDG
Sbjct: 1092 FEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDG 1151
Query: 980 YVSKPFEEENLYRELAKFFK 999
YVSKPFEEE LY +A+FF+
Sbjct: 1152 YVSKPFEEEVLYTAVARFFE 1171
>gi|224053503|ref|XP_002297846.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148359|gb|ACE63262.1| histidine kinase 3A [Populus trichocarpa]
gi|222845104|gb|EEE82651.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1020
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/999 (54%), Positives = 663/999 (66%), Gaps = 83/999 (8%)
Query: 27 YTFIQSNR---AWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQ 83
Y +I S R W K LV WI+G +S+ I+ M + +RKE L SMCD+RARMLQ
Sbjct: 72 YQYIGSKRISKTWWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLTSMCDERARMLQ 131
Query: 84 DQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDA 143
DQFNV++NHV A++IL+STFH+ KNPSA+DQ TFA YT RTAFERPL SGVAYA RV+ +
Sbjct: 132 DQFNVSMNHVQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHS 191
Query: 144 QREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLD 187
+REQFE+Q G TI M S EPSPI++EYAPV+F Q+ ++HV SLD
Sbjct: 192 EREQFEKQQGWTIKRMDSFEQNPVHKDDNAPKALEPSPIQEEYAPVIFAQDTVAHVVSLD 251
Query: 188 MMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKAT 247
M+SG EDREN+LRARA+GK VLT PFRLL + LGV+LTF VYK+ LP +T ERI+AT
Sbjct: 252 MLSGTEDRENVLRARASGKGVLTAPFRLLKTKRLGVILTFAVYKTDLPSNATPNERIQAT 311
Query: 248 AGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESE 307
GY+GG FD+ESLVE LL QLA Q ILVNVYD TN S P+ MYG D L H S
Sbjct: 312 DGYLGGIFDIESLVEKLLQQLASKQTILVNVYDTTNQSCPISMYGSNVSDD--GLEHVSA 369
Query: 308 LDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHK 367
L+ D FRKH+M CR+ QK PW A+TT+ + VI LL+GYI + I KVEDD HK
Sbjct: 370 LNLEDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRIAKVEDDCHK 429
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M EL +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTDL + Q+DY +TAQ G
Sbjct: 430 MMELTKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDANQQDYVRTAQDSG 489
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL++LINEVLD+AKIE+ K+ELE + F+LRAI+DDVL+LFS K+ KGIELAV+VSD V
Sbjct: 490 KALVSLINEVLDQAKIESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIELAVYVSDGV 549
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
PE ++GDPGRFRQIITNL+GNS+KFT++GHIF+ VH E M D + E
Sbjct: 550 PEMLIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHPVEEVMDSIDVETE---------- 599
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ NTLSGL AD R S FK + EG S + S+ V L+V
Sbjct: 600 -----SSSLNTLSGLPVADRRRSCAGFK-IFSREGSSHTLSPSS-------SDLVNLIVS 646
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VEDTG GIPL AQ RVF PFMQ D S SR YGGTGIGLSISKCLV LM G+I F S P
Sbjct: 647 VEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGEIGFASIPDT 706
Query: 668 GSTFSFTAVF-GKCKEYVFEDIKQSKSE------DLPPGFKGLKAVVVDEKPVRAAVTQY 720
GSTF+FTAVF C D KQ K P F+ + A+VVD KPVRA V++Y
Sbjct: 707 GSTFTFTAVFRNGCSNS--NDSKQQKQRIKNQCNTTPSEFQDMTALVVDPKPVRANVSRY 764
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
+ RLGI V++ S + S + S+E++ +I VE++ W +DS +A ++
Sbjct: 765 QIQRLGIHVELVSDLNQGLS-----IISNENRIF-KMIFVEQEVW--EKDSSISAHFVNN 816
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
KL LL ++S + A +G + +VI KPL+ASM+AA LQ+ + NK
Sbjct: 817 LQKIERGVSSKLFLLGNSLSSSRTNTATSGAYTLSVITKPLKASMLAASLQRAMGG-NKG 875
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
G S L+ G+KIL+VDDN VN +VAA ALKK+GA V CA S K A+ L+
Sbjct: 876 NPRNGEHPSLSLCNHLV-GRKILIVDDNKVNLIVAAAALKKYGAEVICADSGKMAIKLLK 934
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
PH FDACFMDIQMPEMDGFEATRRIR MES NG H+PILAM
Sbjct: 935 PPHQFDACFMDIQMPEMDGFEATRRIRDMES-------NG-------------HIPILAM 974
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
TADVI AT++EC +CGMDGYVSKPFE E LY+E+++F +
Sbjct: 975 TADVIQATYEECQRCGMDGYVSKPFEAEQLYQEVSRFLQ 1013
>gi|356553458|ref|XP_003545073.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1225
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/983 (53%), Positives = 664/983 (67%), Gaps = 47/983 (4%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K LV+++ S ++ ++ RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 270 WRKKLLVIFVSLGIIGSFWLFWHLNTGIMRRREETLANMCDERARMLQDQFNVSMNHVHA 329
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ K+PSA+DQ F EYT TAFERPL SGVAYA +V+ + R FE+QHG T
Sbjct: 330 LAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWT 389
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+DEYAPV+F QE +SH+ S+DMMSG+EDRENILRA
Sbjct: 390 IKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRA 449
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LP +T+E+RI+AT GY+G +DV SLV
Sbjct: 450 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATLEQRIEATVGYLGASYDVPSLV 509
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
+ LL QLA Q I+VNVYD TNAS P+ MYG D LL+ S LDFGD RKH+M C
Sbjct: 510 DKLLHQLASKQTIVVNVYDTTNASAPITMYG--TDVADTGLLYISSLDFGDPLRKHEMHC 567
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
+ Q+ PWTA+ + +FVI LL+G+I Y A I KVEDD+ +M+ELKVRAEAADVA
Sbjct: 568 SFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEDDYRQMRELKVRAEAADVA 627
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+DT+L Q D AQTA GK LI++I+EVLD+A
Sbjct: 628 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQA 687
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KLELEAV F+ RAILD++LSLFSEKS KGIELAV+ S++VP+ V+GDP RFRQI
Sbjct: 688 KIEAGKLELEAVAFDPRAILDEILSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQI 747
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ++GH+FV VHLA D L G + T ++TLS
Sbjct: 748 ITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIMDAVLREGLNLNQDISNRT--YDTLS 805
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G + SW FK L S IN E + L+V VEDTGIGIP AQ
Sbjct: 806 GFPVCNRWKSWANFKQL----------SGIN------EPEIIQLLVIVEDTGIGIPTDAQ 849
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSISKCLV+LM G+I FVS P +GSTFSFT F K
Sbjct: 850 SRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKG 909
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
+ + ++Q+ F+GL+ +VVD + +RA VT+YHL RLG+ V ++ S+ A S
Sbjct: 910 ESTSLDAMQQNN--HFGSEFQGLRTLVVDSRKIRAEVTRYHLQRLGMSVDVTYSLNSACS 967
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN---GHVFKLPKLILLAT 797
N S Q +IL++KD W ++ + + N G LPK+ LLAT
Sbjct: 968 CLSNVCNKSMST-QLAMILIDKDAW--DKECHILYTIKKRRQNGIKGDPMNLPKIFLLAT 1024
Query: 798 NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL 857
++S +E D K+ G D ++MKPL S + C + L TENKR + V S LL
Sbjct: 1025 HLSSNEQDGLKSVGIIDDILMKPLWLSSLIQCYRVSLGTENKRVNRKKV----SKLGNLL 1080
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
K+ILVVDDN VNR VA G L+K+GA V S +AAL L+ PH FDACFMD+QMPEM
Sbjct: 1081 IDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLKLPHNFDACFMDLQMPEM 1140
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DGFEATR+IR +ES+ NE++ G +S + H+PILAMTAD ++ +EC+KCGM
Sbjct: 1141 DGFEATRQIRCLESEVNEKIACGQASAEMFGSISYWHIPILAMTADSTQSSNEECIKCGM 1200
Query: 978 DGYVSKPFEEENLYRELAKFFKS 1000
D YVSKPFEEE LY +A+FFKS
Sbjct: 1201 DDYVSKPFEEEKLYMAMARFFKS 1223
>gi|297845680|ref|XP_002890721.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
gi|297336563|gb|EFH66980.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
Length = 1039
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/1015 (52%), Positives = 684/1015 (67%), Gaps = 69/1015 (6%)
Query: 8 NHCHSVALKVNEQMGTKIGYTFIQS---NRAWLPKALVLWIMGMAFISMSIYRGMDEENK 64
N S LK+ Y F+ S N+AW K +V+W++ +S+ ++ +
Sbjct: 66 NKISSSGLKI-----PSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWMFWYFSSQAM 120
Query: 65 IRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRT 124
+RKE L SMCD+RARMLQDQFNV++NHV A++IL+STFH+ K PSA+DQ TF+EYT RT
Sbjct: 121 EKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRT 180
Query: 125 AFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKS----------------EPSPIRD 168
+FERPL SGVAYA RV+ ++RE+FERQ G TI M S EPSP+++
Sbjct: 181 SFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQE 240
Query: 169 EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFP 228
EYAPV+F Q+ +SHV SLDM+SG+EDREN+LRAR++GK VLT PF L+ ++ LGV+LTF
Sbjct: 241 EYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFA 300
Query: 229 VYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPL 288
VYK LP +T +ERI+AT GY+GG FD+ESLVENLL QLA Q ILVNVYD TN S P+
Sbjct: 301 VYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDTTNHSQPI 360
Query: 289 IMYGDQ-NQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLV 347
MYG + DG L S L FGD FRKH+M CR+ QK P ++ T+F + VI LLV
Sbjct: 361 SMYGSNVSADG---LERVSPLIFGDPFRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLV 417
Query: 348 GYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
+I++ I KVE+D KM++LK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L
Sbjct: 418 AHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHML 477
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
+DT+L TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE V F+LR ILDDVLSL
Sbjct: 478 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSL 537
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
FS KS+ KG+ELAV++SD+VP+ ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV VHL E
Sbjct: 538 FSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVEE 597
Query: 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAE-GFQSN 586
D + + + +TLSGL AD + SW+ FK + F+ +
Sbjct: 598 LFESIDGE---------------TASSPESTLSGLPVADRQRSWENFKAFSNEHRSFEPS 642
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
D+ L+V VEDTG+GIPL AQ R+F PFMQ S SR +GGTGIGLS
Sbjct: 643 PL------------DINLIVSVEDTGVGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLS 690
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV-FEDIKQSKSEDLPPGFKGLKA 705
ISKCLV LM+G+I F S P+VGSTF+FTAVF + ++ Q+ ++ + F+G+KA
Sbjct: 691 ISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQTTERKNDPQNNNQPIFSEFRGMKA 750
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
VVVD +P RA V+ YH RLGI V++ ++ A K G T+ ++IL+E++ W
Sbjct: 751 VVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQALRYLKIGTTTV------NMILIEQEIW 804
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
+ E F +L +F PKLILLA ++ + G VI+KPLRASM
Sbjct: 805 -NKEAEVFIKKL----QKDPLFLSPKLILLANSVESSISEALCTGIDPPIVIVKPLRASM 859
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+AA LQ+ L + P + LL G+KIL+VDDN VN VAAGALKK+GA
Sbjct: 860 LAATLQRGLGIGIREPPQHKGPPALIL-RNLLLGRKILIVDDNNVNLRVAAGALKKYGAD 918
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V CA S A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME + N+++ NG + +
Sbjct: 919 VVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIV 978
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ HLP+LAMTADVI AT +ECLKCGMDGYVSKPFE E LYRE+++FF S
Sbjct: 979 ENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFNS 1033
>gi|22353121|gb|AAM14700.1| cytokinin receptor [Catharanthus roseus]
Length = 1041
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/989 (53%), Positives = 667/989 (67%), Gaps = 44/989 (4%)
Query: 31 QSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTV 90
+S W LV++++ F SM ++ + E++K+RRKE L SMCD+RARMLQDQFNV++
Sbjct: 77 RSTGKWWKTLLVVFVLAGIFGSMWLFWYLSEDSKLRRKETLASMCDERARMLQDQFNVSL 136
Query: 91 NHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFER 150
NHVHAL ILVSTF++ K P ALDQ TF +YT +TAFERPL SGVAYA RV+ ++RE+FE+
Sbjct: 137 NHVHALAILVSTFYHGKEPWALDQQTFEDYTEKTAFERPLTSGVAYALRVLHSEREKFEK 196
Query: 151 QHGMTITTM--------------KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRE 196
Q G I M K EP+P++ EYAPV+F Q+ +SH+ S+DMMSG+EDRE
Sbjct: 197 QQGWIIRKMDTEVQTLGQDLVPEKLEPAPVQTEYAPVIFAQKTVSHIVSIDMMSGKEDRE 256
Query: 197 NILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFD 256
NILRARA+GK VLT PF+LL S+HLGVVLTF VY + LPP +T E+RI AT GY+G +D
Sbjct: 257 NILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPEATREQRINATVGYLGASYD 316
Query: 257 VESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRK 316
V SLVE LL QLA Q I VNVYD T+ S P+ MYGD D + + S+LDFGD RK
Sbjct: 317 VPSLVEKLLHQLASKQTIAVNVYDTTDKSAPIKMYGDAANDTGLPRI--SQLDFGDPSRK 374
Query: 317 HKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAE 376
H+M CR+ QK PWTA+ + + VI LL+G+I + A I KVE D+ +M LK RAE
Sbjct: 375 HEMHCRFKQKPPPPWTAIIASVGVLVITLLLGHIFHAAINRIAKVERDYREMMALKHRAE 434
Query: 377 AADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINE 436
AAD+AKSQFLATVSHEIRTPM G+LGML +L+ T+L Q DYA+TA GK LI+LINE
Sbjct: 435 AADIAKSQFLATVSHEIRTPMVGVLGMLQMLMGTNLDVKQLDYAETAHASGKDLISLINE 494
Query: 437 VLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPG 496
VLD+AKIE+ +LELEAV F+LRA LD V+SL S KS K IELAV+VSD+VPE V+GDPG
Sbjct: 495 VLDQAKIESGRLELEAVPFDLRADLDKVVSLLSGKSHEKDIELAVYVSDQVPEVVIGDPG 554
Query: 497 RFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ 555
RFRQIITNLVGNS+KFT ++GHIFV VHLA+ D KDE L T + T
Sbjct: 555 RFRQIITNLVGNSIKFTKDKGHIFVSVHLADEVKSPLDIKDEVLKQSLTL--IQDRSTAS 612
Query: 556 FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615
FNTLSG D SW+KFK N+ S+ + L+V VEDTG GI
Sbjct: 613 FNTLSGFPVVDRWRSWEKFK---------------NLSGMPEESKKIKLLVTVEDTGDGI 657
Query: 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675
AQ+R+F PF+QADSSTSR YGGTGIGLSISK LV+L+ G+I FVS P GSTFSFTA
Sbjct: 658 VYDAQDRIFTPFVQADSSTSRKYGGTGIGLSISKRLVDLVGGEIGFVSEPGTGSTFSFTA 717
Query: 676 VFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
F K + I + + DL F+GLKA+VVDEK +RA VT+Y L RL + V ++S+
Sbjct: 718 AFTKAE--TITGITKWEQYDLAVSEFRGLKALVVDEKSIRAEVTRYQLKRLEVSVDIAST 775
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCW---ISGEDSGFNAQLLDWKPNGHVFKLPK 791
++ A S + SS + + ++L+++D W I G + + PK
Sbjct: 776 VEAAYSHLSADVNSSASE-RVSMVLIDEDSWDNEIMARYVGCLKKSDQTASRPSMGMNPK 834
Query: 792 LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
+ LLA S +C + K+ G D V+ KPLR S++ +CLQ+ + RQ R P S
Sbjct: 835 IFLLANPKSFSDCIELKSTGLVDNVLTKPLRLSILISCLQESIGFGRTRQVTRSNP---S 891
Query: 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
LL+GK++LVVDDN VNR VA AL+K+GA V C AS +AAL +L+ PH FDACFMD
Sbjct: 892 TIGNLLKGKRMLVVDDNPVNRKVAELALRKYGAVVTCEASGEAALQRLKPPHDFDACFMD 951
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+QMPEMDGFEAT++IR +E + NE + +G D + H PILAMTAD+I AT ++
Sbjct: 952 LQMPEMDGFEATQKIRHLEREYNENVKSGEIGTDKSTDEAYWHTPILAMTADLIQATNEK 1011
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
C KCGMDGYVSKPF++E LY +A FFKS
Sbjct: 1012 CRKCGMDGYVSKPFDDEQLYSAVAPFFKS 1040
>gi|18396292|ref|NP_564276.1| histidine kinase 3 [Arabidopsis thaliana]
gi|75168994|sp|Q9C5U1.1|AHK3_ARATH RecName: Full=Histidine kinase 3; AltName: Full=Arabidopsis histidine
kinase 3; Short=AtHK3; AltName: Full=Protein AUTHENTIC
HIS-KINASE 3; AltName: Full=Protein ORESARA 12
gi|13537198|dbj|BAB40775.1| histidine kinase [Arabidopsis thaliana]
gi|332192685|gb|AEE30806.1| histidine kinase 3 [Arabidopsis thaliana]
Length = 1036
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/1013 (52%), Positives = 682/1013 (67%), Gaps = 67/1013 (6%)
Query: 8 NHCHSVALKVNEQMGTKIGYTFIQS---NRAWLPKALVLWIMGMAFISMSIYRGMDEENK 64
N S LK+ Y F+ S N+AW K +V+W++ +S+ + +
Sbjct: 65 NKISSSGLKI-----PSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWTFWYFSSQAM 119
Query: 65 IRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRT 124
+RKE L SMCD+RARMLQDQFNV++NHV A++IL+STFH+ K PSA+DQ TF+EYT RT
Sbjct: 120 EKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRT 179
Query: 125 AFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKS----------------EPSPIRD 168
+FERPL SGVAYA RV+ ++RE+FERQ G TI M S EPSP+++
Sbjct: 180 SFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQE 239
Query: 169 EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFP 228
EYAPV+F Q+ +SHV SLDM+SG+EDREN+LRAR++GK VLT PF L+ ++ LGV+LTF
Sbjct: 240 EYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFA 299
Query: 229 VYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPL 288
VYK LP +T +ERI+AT GY+GG FD+ESLVENLL QLA Q ILVNVYD+TN S P+
Sbjct: 300 VYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDITNHSQPI 359
Query: 289 IMYG-DQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLV 347
MYG + + DG L S L FGD RKH+M CR+ QK P ++ T+F + VI LLV
Sbjct: 360 SMYGTNVSADG---LERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLV 416
Query: 348 GYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
+I++ I KVE+D KM++LK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L
Sbjct: 417 AHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHML 476
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
+DT+L TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE V F+LR ILDDVLSL
Sbjct: 477 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSL 536
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
FS KS+ KG+ELAV++SD+VP+ ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV VHL +
Sbjct: 537 FSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDE 596
Query: 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNA 587
D + + + +TLSGL AD + SW+ FK F SN
Sbjct: 597 LFESIDGE---------------TASSPESTLSGLPVADRQRSWENFK------AFSSNG 635
Query: 588 SIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647
+ D+ L+V VEDTG+GIP+ AQ R+F PFMQ S SR +GGTGIGLSI
Sbjct: 636 H----RSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSI 691
Query: 648 SKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
SKCLV LM+G+I F S P+VGSTF+FTAVF + + K ++ + F+G+KAVV
Sbjct: 692 SKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPA--ERKNDNNQPIFSEFRGMKAVV 749
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
VD +P RA V+ YH RLGI V++ ++ A K G T+ ++IL+E++ W +
Sbjct: 750 VDHRPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTTV------NMILIEQEIW-N 802
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
E F +L +F PKLILLA ++ + G VI+KPLRASM+A
Sbjct: 803 READDFIKKL----QKDPLFLSPKLILLANSVESSISEALCTGIDPPIVIVKPLRASMLA 858
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
A LQ+ L + P + LL G+KIL+VDDN VN VAAGALKK+GA V
Sbjct: 859 ATLQRGLGIGIREPPQHKGPPALIL-RNLLLGRKILIVDDNNVNLRVAAGALKKYGADVV 917
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
CA S A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME + N+++ NG + +
Sbjct: 918 CAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVEN 977
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ HLP+LAMTADVI AT +ECLKCGMDGYVSKPFE E LYRE+++FF S
Sbjct: 978 GNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFNS 1030
>gi|88714405|gb|ABD49494.1| cytokinin receptor 1 [Physcomitrella patens]
Length = 1075
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/1025 (52%), Positives = 698/1025 (68%), Gaps = 61/1025 (5%)
Query: 18 NEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQ 77
+ + G++ G+ W A ++W++ M +S+S+Y M + RR+E L +MC+
Sbjct: 64 DSEAGSRYGHN-------WHTIAFIMWVVFMGAVSVSVYFAMRFDMLERRRENLANMCEG 116
Query: 78 RARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYA 137
RARML++QF ++NHV ALT L++TFH K PSA++Q+TFA Y RTAFERPL+SGVAYA
Sbjct: 117 RARMLEEQFKASMNHVRALTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAYA 176
Query: 138 PRVVDAQREQFERQHGMTITTMKS-EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRE 196
RV+ A R FE +HG TI M S E DEYAP QE +SH+ SLDMMSG+EDRE
Sbjct: 177 ERVLHANRNLFESKHGWTIKEMFSKEKQRDFDEYAPTTMTQETLSHLTSLDMMSGQEDRE 236
Query: 197 NILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFD 256
NI+RAR +GK LT PFRLL S HLGVV TF VY + LP +T E+RIKATAGY+GG FD
Sbjct: 237 NIIRARESGKGALTNPFRLLESKHLGVVFTFAVYTTDLPEDATKEDRIKATAGYLGGAFD 296
Query: 257 VESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRK 316
VE+LVENLL Q+AG+Q I VNVYD+TN + PL+MYG N + M + S+LDFGD R+
Sbjct: 297 VETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGYTNVE-KMQSTYVSDLDFGDPARR 355
Query: 317 HKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAE 376
H+M CR+ + A PWTA++T+ +FVI LVG++L+ + I KVE++ QELK+RA+
Sbjct: 356 HEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRAD 415
Query: 377 AADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINE 436
A +AKSQFLATVSHEIRTPMNG+LGML +L+DT L+ Q DYAQTA GKALI LINE
Sbjct: 416 DAVIAKSQFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKALINLINE 475
Query: 437 VLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPG 496
VLD+AKIE+ +LE E V F+LRAILDDVLSLF KSR GIELAV+VS +VP+ ++GDPG
Sbjct: 476 VLDQAKIESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSARVPKILVGDPG 535
Query: 497 RFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK----DETLLNGGTEEGVCRSG 552
RFRQIITNLVGNS+KFTE GHIFV VHL E + D D+T+ G
Sbjct: 536 RFRQIITNLVGNSIKFTEAGHIFVCVHLNEDVNMVMDGSGGDADDTMDGEVESAGPLNDM 595
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
+FNTLSG E AD RNSW+ F+ L+ E QS+ + + + S+ V L+V VEDTG
Sbjct: 596 NYRFNTLSGRETADYRNSWEMFERLLAQE--QSHN---DTWSYSDSSDVVNLVVSVEDTG 650
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+GIPL Q+RVF PFMQADSSTSR+YGGTGIGLSIS+CLVELM G++ FVSRP+VGSTF+
Sbjct: 651 VGIPLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVSRPKVGSTFT 710
Query: 673 FTAVFGKCKEYVFEDI-KQSKSEDL--PP---GFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
FT + + E I ++ ++ L PP F+G++ +VVD + VR VT++HL RLG
Sbjct: 711 FTVELQRVPANIPERILREGRNSYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLKRLG 770
Query: 727 IMVKMSSSIKDA----SSTAKNGLTSSEDKF-----QPDIILVEKDCWISGEDSGFNAQL 777
+ V+++ ++ +A S+ A G SS ++I V+KD W G F + L
Sbjct: 771 LQVEVAHTVSEAAEILSTVADQGTCSSRGSRGSLAGNIEMIFVDKDAWGPGTGMNFRSLL 830
Query: 778 ----------------LDWKPNGHV-FKLP------KLILLATNISKDECDKAKAGGFAD 814
++ +G + F P +++L+AT+++ E KA GF D
Sbjct: 831 GESAIGHLGYQSSRTSYQYRTSGRIPFGYPVIQSMKRMVLVATSMTDMELGMVKASGFVD 890
Query: 815 TVIMKPLRASMIAACLQQVLSTENK-RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRM 873
TV+ KPLRAS+IAACL+Q+L ++ R + + +G + Q LL GK+ILVVDDN VNR
Sbjct: 891 TVVRKPLRASLIAACLKQILGVGDRSRDQEQELRSGVTSLQTLLYGKRILVVDDNPVNRK 950
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
VAAGAL K+GA VEC S +AA+ KL+ PH FDACFMD+QMPEMDGFEAT IR+ E+ A
Sbjct: 951 VAAGALHKYGAQVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGFEATGLIRKAEAAA 1010
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
E+ G T KR LH+PILAMTADVI AT +EC++CGMDGYV+KPF+E LY+
Sbjct: 1011 AERGQAAGLP---TFKR-RLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHQLYQA 1066
Query: 994 LAKFF 998
+AK F
Sbjct: 1067 VAKHF 1071
>gi|168018438|ref|XP_001761753.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162687124|gb|EDQ73509.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1022
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/994 (53%), Positives = 687/994 (69%), Gaps = 46/994 (4%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W A ++W++ M +S+S+Y M + RR+E L +MC+ RARML++QF ++NHV A
Sbjct: 40 WHTIAFIMWVVFMGAVSVSVYFAMRFDMLERRRENLANMCEGRARMLEEQFKASMNHVRA 99
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
LT L++TFH K PSA++Q+TFA Y RTAFERPL+SGVAYA RV+ A R FE +HG T
Sbjct: 100 LTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAYAERVLHANRNLFESKHGWT 159
Query: 156 ITTMKS-EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFR 214
I M S E DEYAP QE +SH+ SLDMMSG+EDRENI+RAR +GK LT PFR
Sbjct: 160 IKEMFSKEKQRDFDEYAPTTMTQETLSHLTSLDMMSGQEDRENIIRARESGKGALTNPFR 219
Query: 215 LLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAI 274
LL S HLGVV TF VY + LP +T E+RIKATAGY+GG FDVE+LVENLL Q+AG+Q I
Sbjct: 220 LLESKHLGVVFTFAVYTTDLPEDATKEDRIKATAGYLGGAFDVETLVENLLRQMAGSQII 279
Query: 275 LVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTAL 334
VNVYD+TN + PL+MYG N + M + S+LDFGD R+H+M CR+ + A PWTA+
Sbjct: 280 AVNVYDITNETMPLVMYGYTNVE-KMQSTYVSDLDFGDPARRHEMRCRFKEDALPPWTAI 338
Query: 335 TTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIR 394
+T+ +FVI LVG++L+ + I KVE++ QELK+RA+ A +AKSQFLATVSHEIR
Sbjct: 339 STSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHEIR 398
Query: 395 TPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVL 454
TPMNG+LGML +L+DT L+ Q DYAQTA GKALI LINEVLD+AKIE+ +LE E V
Sbjct: 399 TPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKALINLINEVLDQAKIESGRLEFEHVP 458
Query: 455 FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK--- 511
F+LRAILDDVLSLF KSR GIELAV+VS +VP+ ++GDPGRFRQIITNLVGNS+K
Sbjct: 459 FDLRAILDDVLSLFHGKSRASGIELAVYVSARVPKILVGDPGRFRQIITNLVGNSIKVII 518
Query: 512 ------------FTERGHIFVKVHLAERTMVKTDAK----DETLLNGGTEEGVCRSGTGQ 555
FTE GHIFV VHL E + D D+T+ G +
Sbjct: 519 CSKCLNLLYMSHFTEAGHIFVCVHLNEDVNMVMDGSGGDADDTMDGEVESAGPLNDMNYR 578
Query: 556 FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615
FNTLSG E AD RNSW+ F+ L+ E QS+ + + + S+ V L+V VEDTG+GI
Sbjct: 579 FNTLSGRETADYRNSWEMFERLLAQE--QSHN---DTWSYSDSSDVVNLVVSVEDTGVGI 633
Query: 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675
PL Q+RVF PFMQADSSTSR+YGGTGIGLSIS+CLVELM G++ FVSRP+VGSTF+FT
Sbjct: 634 PLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVSRPKVGSTFTFTV 693
Query: 676 VFGKCKEYVFEDI-KQSKSEDL--PP---GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
+ + E I ++ ++ L PP F+G++ +VVD + VR VT++HL RLG+ V
Sbjct: 694 ELQRVPANIPERILREGRNSYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLKRLGLQV 753
Query: 730 KMSSSIKDA----SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
+++ ++ +A S+ A G SS ++I V+KD W G F + L +
Sbjct: 754 EVAHTVSEAAEILSTVADQGTCSSRGSRNIEMIFVDKDAWGPGTGMNFRSLLGEM----- 808
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK-RQAGR 844
+ + +++L+AT+++ E KA GF DTV+ KPLRAS+IAACL+Q+L ++ R +
Sbjct: 809 IQSMKRMVLVATSMTDMELGMVKASGFVDTVVRKPLRASLIAACLKQILGVGDRSRDQEQ 868
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
+ +G + Q LL GK+ILVVDDN VNR VAAGAL K+GA VEC S +AA+ KL+ PH
Sbjct: 869 ELRSGVTSLQTLLYGKRILVVDDNPVNRKVAAGALHKYGAQVECVYSGRAAIQKLKPPHN 928
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
FDACFMD+QMPEMDGFEAT IR+ E+ A E+ G T KR LH+PILAMTADV
Sbjct: 929 FDACFMDVQMPEMDGFEATGLIRKAEAAAAERGQAAGLP---TFKR-RLHVPILAMTADV 984
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
I AT +EC++CGMDGYV+KPF+E LY+ +AK F
Sbjct: 985 IQATSEECMRCGMDGYVAKPFDEHQLYQAVAKHF 1018
>gi|224075549|ref|XP_002304678.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222842110|gb|EEE79657.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1029
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1014 (52%), Positives = 673/1014 (66%), Gaps = 92/1014 (9%)
Query: 27 YTFIQSNR---AWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQ 83
Y +I S R W K LV WI+G +S+ I+ M + +RKE L SMCD+RARMLQ
Sbjct: 72 YQYIGSKRIRKTWWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLASMCDERARMLQ 131
Query: 84 DQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDA 143
DQFNV++NHV A++IL+STFH+ KNPSA+DQ TFA YT RTAFERPL SGVAYA RV+ +
Sbjct: 132 DQFNVSMNHVQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVMHS 191
Query: 144 QREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLD 187
+REQFE Q G TI M + EPSPI++EYAPV+F Q+ ++HV SLD
Sbjct: 192 EREQFENQQGWTIKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFAQDTVAHVVSLD 251
Query: 188 MMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKAT 247
M+SG EDREN+LRARA+GK VLT PFRLL ++ LGV+LTF VYK+ LP + ERI+AT
Sbjct: 252 MLSGTEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNAMPNERIQAT 311
Query: 248 AG----------YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQD 297
G Y+GG FD+ESLVE LL QLA Q ILVNVYD+TN S P+ MYG D
Sbjct: 312 DGSSDLLMTPIRYLGGIFDIESLVEKLLQQLASKQTILVNVYDITNQSHPISMYGSNVSD 371
Query: 298 GDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIH 357
L H S L+FGD FRKH+M CR+ QK PW A+TT+ + VI LL+GYI +
Sbjct: 372 D--GLEHVSALNFGDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNR 429
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
I KVEDD+++M ELK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L +TQ+
Sbjct: 430 IAKVEDDYNEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDATQQ 489
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
DY +TAQ GKAL++LINEVLD+AKIE+ K+ELEA+ F+LRAI+D+VL+LFS K+ KG+
Sbjct: 490 DYVRTAQDSGKALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGV 549
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
ELAV+VSD VPE ++GDPGRFRQIITNL+GNS+KFT++GHIF+ VHL E M D + E
Sbjct: 550 ELAVYVSDGVPEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETE 609
Query: 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
+ NTLSGL AD SW FK + EG S +
Sbjct: 610 ---------------SSSRNTLSGLPVADRCRSWVGFKTF-NPEGSSHTLSPSS------ 647
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
S+ + L+V VEDTG GIPL AQ RVF PFMQ D S SR YGGTGIGLSISKCLV LM G
Sbjct: 648 -SDLINLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNG 706
Query: 658 QISFVSRPQVGSTFSFTAVFGK-CKEYVFEDIK----QSKSEDLPPGFKGLKAVVVDEKP 712
I FVS P +GSTF+FTAVF C ++ ++++ + F+G+ A+VVD KP
Sbjct: 707 DIGFVSIPDIGSTFTFTAVFSNGCSNSNDSKLQKQRLKTQTNTMSSKFQGMTALVVDPKP 766
Query: 713 VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG 772
VRA V++Y + RLGI V++ + S+ N E+K +++ +E++ W +DS
Sbjct: 767 VRAKVSRYQIQRLGIHVELVLDLNQGLSSISN-----ENKVV-NMVFIEQEVW--DKDSS 818
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+A ++ K V + + L N + A +G + +VI KPL+ASM+AA LQ+
Sbjct: 819 ISALFVN-KLQKIVSGVSTKLFLLGNSLSSRTNTATSGVYTPSVITKPLKASMLAASLQR 877
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ NK G S + LL G+K+L+VDDN VN MVAA ALKK+GA V CA S
Sbjct: 878 AMGG-NKGNPCNGEHPSLSLRK-LLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSG 935
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A+ L+ PH FDACFMDIQMPEMDGFEATRRIR MES
Sbjct: 936 QKAIKLLKPPHKFDACFMDIQMPEMDGFEATRRIRDMESN-------------------- 975
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
H+PILAMTADVI AT++EC +CGMDGYVSKPFE E LY E+++F +P S A
Sbjct: 976 WHIPILAMTADVIQATYEECQRCGMDGYVSKPFEAEQLYHEVSRFL--QPTSSA 1027
>gi|449445544|ref|XP_004140532.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
gi|449518188|ref|XP_004166125.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
Length = 1010
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/998 (53%), Positives = 679/998 (68%), Gaps = 60/998 (6%)
Query: 27 YTFIQSNR---AWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQ 83
Y +I S + W + LV W++ S+ I+ M + +RKE LGSMCD+RARMLQ
Sbjct: 43 YQYIGSKKVKKTWWRRLLVAWVLSSILASLWIFHYMSSQATEKRKEALGSMCDERARMLQ 102
Query: 84 DQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDA 143
DQFNV++NH+ A++IL+STFH+ KNPSA+DQ TFA YT RTAFERPL SGVAYA RV+ +
Sbjct: 103 DQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHS 162
Query: 144 QREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLD 187
RE+FE+Q G TI M EPSP +DEYAPV+F Q+ +SHV SLD
Sbjct: 163 DRERFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLD 222
Query: 188 MMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKAT 247
M+SG EDR N+LRARA+GK VLT PF+L+ ++ LGV+LTF VYK LP +T ERI+AT
Sbjct: 223 MLSGVEDRNNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQAT 282
Query: 248 AGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYG-DQNQDGDMSLLHES 306
GY+GG FD+ESLVE LL QLA NQ ILVNVYD TN S P+ MYG D ++DG L H S
Sbjct: 283 DGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDG---LQHVS 339
Query: 307 ELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFH 366
L+FGD RKH+M CR+ QK PW A+TT+ + +I LL+GYI + I KVEDD+H
Sbjct: 340 PLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYH 399
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+M LK RAE AD+AKSQFLATVSHEIRTPMNG+LGML LL+DTDL TQ+DY +TAQ
Sbjct: 400 EMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDS 459
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
GKAL++LINEVLD+AKIE+ KLELEA+ FNLRA LDD+LSLFS KS+ KG+ELAV+VSD
Sbjct: 460 GKALVSLINEVLDQAKIESGKLELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYVSDS 519
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VPE ++GDPGRFRQIITNLVGNS+KFTE+GHIFV V+L + + D + E+ N
Sbjct: 520 VPETLVGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSKN----- 574
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+TLSG A+ R SW F+ Q ++ + M S + + LMV
Sbjct: 575 ----------STLSGYPVANRRLSWAGFRTF-----SQEGSTACHFMTS--PPDLINLMV 617
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
VEDTG+GIPL AQ R+F PFMQ S SR +GGTGIGLSISKCLV LM+G+I FVS P+
Sbjct: 618 SVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPK 677
Query: 667 VGSTFSFTAVFGKCKEYV-FEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLN 723
+GSTF+FTAVF C + + +Q K+ + FKG++A+VVD +P+RA V++YH+
Sbjct: 678 IGSTFTFTAVFTNCSNSSEYNNTQQIKNTSISATSEFKGMRALVVDHQPIRAKVSRYHIQ 737
Query: 724 RLGIMVKMSSSIKDA-SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
RL I V++ S + S+T +G T ++I VE+ W ++ + +
Sbjct: 738 RLAINVEVLSDLNQCLSTTTISGSTV-------NMIFVEQKLW--DQNVSTSDHFIKNLR 788
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
N + PKL LL ++IS + + F TVI+KPLRA M+AA L +V++ K
Sbjct: 789 NSYAVP-PKLFLLTSSISSSKASTTVSDVFTPTVILKPLRAGMLAASLHRVMNVGIKGNP 847
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
G S + LL G+KILV+DDN VNR+VAAGAL+++GA V C S + A+ L P
Sbjct: 848 RNGELPVLSL-RNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIQLLTPP 906
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H FDACFMDIQMPEMDGFEATRRIR++E + N+ + G S + +PILAMTA
Sbjct: 907 HHFDACFMDIQMPEMDGFEATRRIREIEHRINDGIQVGELSKEAYENTCYWRVPILAMTA 966
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
DVI AT +ECL+CGMDGYVSKPFE E LYRE+++FF S
Sbjct: 967 DVIQATHEECLRCGMDGYVSKPFEVERLYREVSQFFHS 1004
>gi|357495343|ref|XP_003617960.1| Histidine kinase cytokinin receptor [Medicago truncatula]
gi|355519295|gb|AET00919.1| Histidine kinase cytokinin receptor [Medicago truncatula]
Length = 1269
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/987 (53%), Positives = 660/987 (66%), Gaps = 57/987 (5%)
Query: 36 WLPKALVLWIMGMAFI-SMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVH 94
W K L++ M + + S ++R M + RR+E+L +MCD+RARMLQDQFNV++NHVH
Sbjct: 259 WRRKKLLVIFMSVGILGSAWLFRYMSSDIAQRREEMLATMCDERARMLQDQFNVSMNHVH 318
Query: 95 ALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGM 154
AL ILVSTFH+ K+PSA+DQ F EYT +AFERPL SGVAYA +V+ + R FE+QHG
Sbjct: 319 ALAILVSTFHHGKHPSAVDQKIFGEYTESSAFERPLTSGVAYALKVLHSDRMHFEKQHGW 378
Query: 155 TITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILR 200
TI M++E P+PI+DEYAPV+F QE +SH+ S+DMMSG+EDRENILR
Sbjct: 379 TIKKMETENEALVQECIPENLDPAPIQDEYAPVVFAQETVSHIVSIDMMSGKEDRENILR 438
Query: 201 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
ARA+GK VLT PF+LL S++LGVVLTF VY SKLPP +T E+RI+AT GY+G +DV SL
Sbjct: 439 ARASGKGVLTSPFKLLKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVGYLGASYDVPSL 498
Query: 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMI 320
V+ LL QLA Q I VNVYD TNASDP+ MYG D LLH S LDFGD RKH+M
Sbjct: 499 VDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDVLD--TGLLHISGLDFGDPLRKHEMH 556
Query: 321 CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV 380
CR+ PWTA + +FVI L+GYI Y A I KVEDD+ +M+ELKVRAEAADV
Sbjct: 557 CRFKHTPPFPWTAFWASVGVFVITFLLGYIFYAAINRIAKVEDDYCQMRELKVRAEAADV 616
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLATVSHEIRTPMNG+LGML +L+DTDL Q D+AQTA GK LI++I+EVL +
Sbjct: 617 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQMDFAQTAHTSGKDLISVISEVLYQ 676
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
AKIEA KLELEAV F+ AILD+VLSLFSEKS KGIEL+V+ S++VPE V+GDP RFRQ
Sbjct: 677 AKIEAGKLELEAVAFHPHAILDEVLSLFSEKSDEKGIELSVYASNQVPEVVIGDPKRFRQ 736
Query: 501 IITNLVGNSVKFTE-RGHIFVKVHLAERTMVKTDAKDETL-----LNGGTEEGVCRSGTG 554
IITNLVGNS+KF +GH+FV +HLA D L LN E C
Sbjct: 737 IITNLVGNSLKFIHNKGHVFVSIHLANEVKNPLHIMDAVLRECLNLNQDMSERTC----- 791
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
NTLSG + SW+KF+ L A SE + L+V VEDTGIG
Sbjct: 792 --NTLSGFPVGNRWKSWEKFQKLNLAH----------------ESETIQLLVTVEDTGIG 833
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
IP AQ R+F PFMQADSSTSR YGGTGIGLSISKCLV+LM G+I FVS P++GSTFSFT
Sbjct: 834 IPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFT 893
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
F K E D K K+ L F+GL+A+V+D + +RA VT+YHL RLG+ V ++SS
Sbjct: 894 GNFRK-GETESVDEKWQKNNPLASEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVDVNSS 952
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN---GHVFKLPK 791
++ A + + SS Q +IL++KD W ++S + N G PK
Sbjct: 953 LQSACFSLSDTCNSSMLT-QLAMILIDKDSW--DKESSILYAIKKQGQNGVKGDSLNFPK 1009
Query: 792 LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
+ LLAT++S +E + K+ G D V+MKPL S++ ++ L T K+ + V S
Sbjct: 1010 IFLLATHLSPNERKELKSVGIIDDVLMKPLWQSVLIRYYRESLGTGRKQIDRKKV----S 1065
Query: 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
+ LL K+ILVVDDN VNR VA G L+K+GA V C KAAL L+ PH FDACFMD
Sbjct: 1066 QLENLLIHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKAALKVLKPPHNFDACFMD 1125
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+QMPEMDGFE TRRIR ME++ NE++ G + H+PILAMTADV A+ +E
Sbjct: 1126 LQMPEMDGFEVTRRIRYMENEVNEKIACGEELAEMFGNISYWHIPILAMTADVTQASNEE 1185
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFF 998
C KCGMD +VSKPFEEE LY +A F
Sbjct: 1186 CKKCGMDDFVSKPFEEEQLYTAVACVF 1212
>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
Length = 1027
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/1014 (51%), Positives = 681/1014 (67%), Gaps = 79/1014 (7%)
Query: 16 KVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMC 75
K+++Q IG ++ R K L+ W++G +S+ I+ G++ N +RKE L SMC
Sbjct: 63 KIHQQYYQCIGSKRVR--RKLWRKLLLAWVLGWFIVSLWIFCGINLHNTEKRKETLASMC 120
Query: 76 DQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVA 135
D+RARMLQDQFNV++NH+ A++IL+STFH+ KNPSA+DQ TFA+YT RTAFERPL SGVA
Sbjct: 121 DERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTSGVA 180
Query: 136 YAPRVVDAQREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEP 179
YA RV+ ++REQFE+Q G +I M + EP PI +EYAPV+F Q+
Sbjct: 181 YAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPPPIHEEYAPVIFAQDT 240
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+SHV S+D++SG+EDREN+LRAR +GK VLT PFRLL ++ LGV+LTF VYK LP +T
Sbjct: 241 ISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNAT 300
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
ERI+AT GY+GG F++ESLVE LL QLA Q +LVNVYD TN + P+ MYG + GD
Sbjct: 301 PNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHPIPMYGS-DVSGD 359
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
H S L+FGD FRKH+M CR+ QK P A T+ + VI LLVG+I + I
Sbjct: 360 -EFYHVSFLNFGDPFRKHEMHCRFKQKPPFPRLATGTSIGILVITLLVGHICHATVSRIA 418
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVE D+ +M LK RAEAADVAKSQFLATVSHEIRTPMNG+LGM+ +L+DTDL TQ++Y
Sbjct: 419 KVESDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEY 478
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+TAQ GKAL+++INEVLD+AKIE+ K+ELEAVLF++RAI+DDVLSLFSEKS+ KG+EL
Sbjct: 479 VRTAQGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRAIMDDVLSLFSEKSQGKGVEL 538
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
AV+VSD+VP+ ++GDPGRFRQIITNL+GNS+KFT++GHIFV +HL E + + E+
Sbjct: 539 AVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERES- 597
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
+ +TLSG ADGR SW+ F+ S+ + +S +
Sbjct: 598 -----------TSKDAEHTLSGFPVADGRRSWEGFRAF-------SHEGPLGSFSSTSSN 639
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ ++L+V VEDTG GIPL +Q +F PFMQ S SR +GGTGIGLSISKCLV LM G+I
Sbjct: 640 DLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEI 699
Query: 660 SFVSRPQVGSTFSFTAVF-GKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAA 716
FVS P++GSTF+FTAVF C +Q ++ P F G+ A+V+D +PVRA
Sbjct: 700 GFVSEPKIGSTFTFTAVFTNACPNSNELQTQQINNQPHPATSEFNGMAALVIDPRPVRAE 759
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
V++YH RLG+ V++ S +K ST +G S +++L+E++ W DS ++
Sbjct: 760 VSRYHRQRLGVRVEIVSDLKQGLSTVTDGDASI------NMVLIEQEVW--ERDSSISSH 811
Query: 777 LLDWKPNGHVFKL----------PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
++ ++ K+ PKL +L + S + TV+ KPLRASM+
Sbjct: 812 FVN-----NIRKIVEVDKGKEIPPKLFILVNSSSSFRASSTASCLHNPTVVTKPLRASML 866
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
AA LQ+ + NK G G S LL G+KIL+VDDN VNR VAAGALKK+GA V
Sbjct: 867 AASLQRAMGVGNKGNPRNGEHQGLSLKH-LLSGRKILIVDDNSVNRTVAAGALKKYGAGV 925
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
C +S A+ L+ PH FDACFMDIQMPEMDGFEATRRIR++E+ ++ +
Sbjct: 926 VCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGFEATRRIREIENNVKDRELF------- 978
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+HLPILAMTADV+ AT EC KCGMDGYVSKPFE E LYRE++KFF+S
Sbjct: 979 ------VHLPILAMTADVMQATHQECSKCGMDGYVSKPFEAEQLYREVSKFFQS 1026
>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1187
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/990 (53%), Positives = 677/990 (68%), Gaps = 45/990 (4%)
Query: 30 IQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
++ +R W +AL+L ++ S+ I+ M + RR E L +MCD+RARMLQDQFNV+
Sbjct: 217 VKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENLENMCDERARMLQDQFNVS 276
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
+NHVHAL ILVSTFH+ KNPSA+DQ TF ++T RT FERPL+SGVAYA +V+ ++RE FE
Sbjct: 277 MNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSERELFE 336
Query: 150 RQHGMTITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDR 195
++ G I M++E PSP++DEYAPV+F QE + H+ S+DMMSG+EDR
Sbjct: 337 QKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDR 396
Query: 196 ENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPF 255
+NILR+RATGK LT PF LL S+HLGVVLTF VYK LPP +T EERI+AT GY+G F
Sbjct: 397 DNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEERIEATLGYLGASF 456
Query: 256 DVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFR 315
DV SLVE LL QLA Q I+V +YD+TN + P MY D LH S +DFGD R
Sbjct: 457 DVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--LHISNIDFGDPTR 514
Query: 316 KHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRA 375
KH M CR+ S PW+A+ + + +I LLVGYI+Y + + ED++ M++LK RA
Sbjct: 515 KHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKGRA 574
Query: 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALIN 435
EAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L +TQRD+ TAQ GK+LI LIN
Sbjct: 575 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLINLIN 634
Query: 436 EVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP 495
EVLD AKIE+ K+ELEAV F++R ILD+V+SLFSEKS KGIELAV VSD+VP+ ++GDP
Sbjct: 635 EVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDP 694
Query: 496 GRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ 555
RFRQIITNLVGNS+KFTE+GHIF++VHL E K +A D+T E T
Sbjct: 695 WRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPE-NIEVTANSKNTMP 753
Query: 556 FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615
+NTLSGLE A+ R + + F+ D S+ + V L+V VEDTGIGI
Sbjct: 754 YNTLSGLEVANNRKTLESFRMFKD---------------SSDAIDSVNLLVTVEDTGIGI 798
Query: 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675
AQ R+F PFMQAD STSR YGGTGIGLSI+K LVELM G+I FVS+P V STFSFTA
Sbjct: 799 TKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTA 858
Query: 676 VFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSI 735
+F + ++ DIK+ E PP F+G++A+VVD + RA VT YHL RLGI ++++
Sbjct: 859 IFKENRKDP-GDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGIQCDLAATS 917
Query: 736 KDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG--FNAQLLDWKPNGHVFK---LP 790
+ A S SS K +++LV+K+ W GEDSG F L+D + G + +P
Sbjct: 918 ESALSALLESCNSSV-KSSLNMVLVDKEAW--GEDSGLAFFRCLIDLRLKGTLKSWQTMP 974
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS 850
K LLA +I+ + D + G++++ I KPLR S +AACL + L GR + S
Sbjct: 975 KFFLLAGSITPADSDCLRLAGYSNS-IRKPLRLSTVAACLSKALGVG---LTGRRSRDNS 1030
Query: 851 SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
+ +L GK ILVVDDN VNR+VAAGALKK+GA V C S K A+ +LQ PH FDACFM
Sbjct: 1031 LVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFM 1090
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
D+QMPEMDGFEATR +R +ESK N+ + G S + + H+PILAMTADVI ATF+
Sbjct: 1091 DVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQATFE 1150
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
C++CGMDGYV+KPFEE+ LY +A F ++
Sbjct: 1151 GCMECGMDGYVAKPFEEQQLYSAVAHFLEA 1180
>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
Length = 1201
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/987 (52%), Positives = 671/987 (67%), Gaps = 44/987 (4%)
Query: 33 NRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNH 92
+R W +AL++ ++ S+ I+ M + RR E L +MCD+RARMLQDQFNV++NH
Sbjct: 236 SRKWSKRALLIGVLFGLCSSLCIFSCMYADVVARRIENLANMCDERARMLQDQFNVSMNH 295
Query: 93 VHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQH 152
VHAL ILVS+FH+ K+PSA+DQ TF ++T RT FERPL+SGVAYA +V+ +R+QFE QH
Sbjct: 296 VHALAILVSSFHHGKDPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHNERQQFEEQH 355
Query: 153 GMTITTM--------------KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENI 198
G I M K EPSP++DEYAPV+F QE + H+ S+DMMSG+ED +NI
Sbjct: 356 GWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDHDNI 415
Query: 199 LRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVE 258
LR+R+TGK LT PF+LL S+HLGVVLTF VYK LPP +T +ERI AT GY+G FDV
Sbjct: 416 LRSRSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIHATLGYLGASFDVP 475
Query: 259 SLVENLLGQLAGNQAILVNVYDMTNASDPLIMYG-DQNQDGDMSLLHESELDFGDSFRKH 317
SLV+ LL QLA + I+VN+YD TN + P+ MYG D GD LH S +DFGD RKH
Sbjct: 476 SLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGD---LHISSIDFGDPTRKH 532
Query: 318 KMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEA 377
+M CR+ + S PW+A+ + + +I LLVG+I+Y + K E D+ M+ELK +AEA
Sbjct: 533 EMHCRFKHEPSLPWSAIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQAEA 592
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
ADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L +TQ+D+ TAQ GK LI LINEV
Sbjct: 593 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEV 652
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD AKIE+ ++ELEAV F++R ILD+V+SLF EKS+ KGIELAV VSD+VP+ ++GDP R
Sbjct: 653 LDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWR 712
Query: 498 FRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ-F 556
FRQIITNLVGNS+KFTE+GHIFV+VHL + K + ++ E + S +
Sbjct: 713 FRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRK--GNNFCDVSAHNREILYDSDNSMLW 770
Query: 557 NTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIP 616
NTLSGLE AD S + F + SNG ++ + L V VEDTGIGI
Sbjct: 771 NTLSGLEVADSWRSLENFTMFKN---------------SNGETDTIRLAVRVEDTGIGIT 815
Query: 617 LSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676
AQ R+F PFMQADSSTSR YGGTGIGLSI+K LVELM G+I F S+ VGSTFSFTA+
Sbjct: 816 KDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAI 875
Query: 677 FGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK 736
F K D+K+ SE P F+G++A+++D + RA VT YHL RLGI + ++ +
Sbjct: 876 F-KENRGCPGDMKRYYSEPTPLDFQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSE 934
Query: 737 DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG-HVFK--LPKLI 793
S+++ + K PD++LV+ + W G F + +D + G H F +PK I
Sbjct: 935 SESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHKFSQPMPKTI 994
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
LL ++IS E D + GF D I KPLR S I ACL++ L RQ R + S
Sbjct: 995 LLGSSISPVESDYLRLTGFGD-CIRKPLRLSTIVACLRKTLGVGVTRQQSR---DQSLVL 1050
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
Q +L GK+ILVVDDN VNR VAAG+LKK+G+TV C S A+D L+ PH FDACFMD+Q
Sbjct: 1051 QSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDVQ 1110
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDGFEATR IR +E K N+ +M G S + + H+PILAMTADVI ATF++C+
Sbjct: 1111 MPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQATFEKCM 1170
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKS 1000
+CGMDGYVSKPFEE+ LY +A F ++
Sbjct: 1171 QCGMDGYVSKPFEEQQLYSAVAHFLET 1197
>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
Length = 1047
Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/1027 (50%), Positives = 682/1027 (66%), Gaps = 92/1027 (8%)
Query: 16 KVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMC 75
K+++Q IG ++ R K L+ W++G S+ I+ G++ N +RKE L SMC
Sbjct: 70 KIHQQYYQCIGSKRVR--RELWRKLLLAWVLGWFIASLWIFCGINLHNTEKRKETLASMC 127
Query: 76 DQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVA 135
D+RARMLQDQFNV++NH+ A++IL+STFH+ KNPSA+DQ TFA+YT RTAFERPL SGVA
Sbjct: 128 DERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTSGVA 187
Query: 136 YAPRVVDAQREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEP 179
YA RV+ ++REQFE+Q G +I M + EPSPI +EYAPV+F Q+
Sbjct: 188 YAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPSPIHEEYAPVIFAQDT 247
Query: 180 MSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRST 239
+SHV S+D++SG+EDREN+LRAR +GK VLT PFRLL ++ LGV+LTF VYK LP +T
Sbjct: 248 ISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNAT 307
Query: 240 VEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGD 299
ERI+AT GY+GG F++ESLVE LL QLA Q +LVNVYD TN + + MYG + GD
Sbjct: 308 PNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHSIPMYGS-DVSGD 366
Query: 300 MSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIV 359
H S L+FGD FRKH+M CR+ QK P A T+ + VI LLVG+I + I
Sbjct: 367 -EFYHVSFLNFGDPFRKHEMHCRFKQKPPFPRLATGTSIGILVIALLVGHIFHATVSRIA 425
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KVEDD+ +M LK RAEAADVAKSQFLATVSHEIRTPMNG+LGM+ +L+DTDL TQ++Y
Sbjct: 426 KVEDDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEY 485
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE- 478
+TAQ GKAL+++INEVLD+AKIE+ K+ELEAVLF++R+I+DDVLSLFSEKS+ KG+E
Sbjct: 486 VRTAQGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRSIMDDVLSLFSEKSQGKGVEA 545
Query: 479 ------------LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
LAV+VSD+VP+ ++GDPGRFRQIITNL+GNS+KFT++GHIFV +HL E
Sbjct: 546 LRVWFYSFLGAKLAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVE 605
Query: 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSN 586
+ + E+ + +TLSG ADGR SW+ F+ S+
Sbjct: 606 EVFHSIEVERES------------TSKDAEHTLSGFPVADGRRSWEGFRAF-------SH 646
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
+ +S ++ ++L+V VEDTG GIPL +Q +F PFMQ S SR +GGTGIGLS
Sbjct: 647 EGPLGSFSSTSSNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLS 706
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVF-GKCKEYVFEDIKQSKSEDLPPG--FKGL 703
ISKCLV LM G+I FVS P++GSTF+FTAVF C +Q ++ P F G+
Sbjct: 707 ISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACPNSNELKTQQINNQPHPATSEFNGM 766
Query: 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKD 763
A+V+D +PVRA V++YH+ RLG+ V++ S +K ST +G S ++IL+E++
Sbjct: 767 AALVIDPRPVRAEVSRYHIQRLGVRVEIVSDLKQGLSTVTDGDASV------NMILIEQE 820
Query: 764 CWISGEDSGFNAQLLDWKPNGHVFKL----------PKLILLATNISKDECDKAKAGGFA 813
W DS ++ ++ ++ K+ PKL +L + S +
Sbjct: 821 VW--DRDSSISSHFVN-----NIRKVVEIDKGKGIPPKLFILVNSSSSFRAGSTASCLHN 873
Query: 814 DTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRM 873
TV+ KPLRASM+AA LQ+ + NK G G S LL G+KIL+VDDN VNR
Sbjct: 874 PTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQGLSLKH-LLSGRKILIVDDNSVNRT 932
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
VAAGALKK+GA V C +S A+ L+ PH FDACFMDIQMPEMDGFEATRRIR++E+
Sbjct: 933 VAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGFEATRRIREIENSV 992
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
++ + +HLPILAMTADV+ AT EC KCGMDGYVSKPFE E LYRE
Sbjct: 993 KDRELF-------------VHLPILAMTADVMQATHQECSKCGMDGYVSKPFEAEQLYRE 1039
Query: 994 LAKFFKS 1000
++KFF+S
Sbjct: 1040 VSKFFQS 1046
>gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1282
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/983 (53%), Positives = 658/983 (66%), Gaps = 50/983 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K LV+++ S ++ ++ RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 330 WRKKLLVIFVSLGIIGSFWLFWHLNTGIMQRREETLANMCDERARMLQDQFNVSMNHVHA 389
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ K+PSA+DQ F EYT TAFERPL SGVAYA +V+ + R FE+QHG T
Sbjct: 390 LAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWT 449
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PI+DEYAPV+F QE +SH+ S+DMMSG+ED ENILRA
Sbjct: 450 IKKMETENEALVQDCIPEKLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDHENILRA 509
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LP +T E+R +AT GY+G +DV SLV
Sbjct: 510 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRTEATVGYLGASYDVPSLV 569
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
+ LL QLA Q I+VNVYD TNAS P+ MYG D LLH S LDFGD RKH+M C
Sbjct: 570 DKLLHQLASKQTIVVNVYDTTNASAPITMYG--TDVADTGLLHISSLDFGDPLRKHEMHC 627
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ Q+ PWTA+ + +FVI LL+G+I Y A I KVE D+ +M+ELKVRAEAADVA
Sbjct: 628 RFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEADYRQMRELKVRAEAADVA 687
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML +L+DT+L Q D AQTA GK LI++I+EVLD+A
Sbjct: 688 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQA 747
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KLELEAV F+ RAILD+VLSLFSEKS KGIELAV+ S++VP+ V+GDP RFRQI
Sbjct: 748 KIEAGKLELEAVAFDPRAILDEVLSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQI 807
Query: 502 ITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
ITNLVGNS+KFT ++GH+FV VHLA D L G + T ++TLS
Sbjct: 808 ITNLVGNSLKFTHDKGHVFVSVHLASEVKNPLHIMDAVLREGLNLSQDITNRT--YDTLS 865
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G + SW F L + E + L+V VEDTGIGIP AQ
Sbjct: 866 GFPVCNRWKSWANFTKL----------------SGTNEPEIIQLLVIVEDTGIGIPTDAQ 909
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSIS+CLV+LM G+I FVS P +GSTFSFT F K
Sbjct: 910 SRIFTPFMQADSSTSRTYGGTGIGLSISRCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKG 969
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
+ + ++Q+ F+ L+ +VVD + +RA VT+YHL RLG+ V ++ S+ A S
Sbjct: 970 ESTSLDAMRQNN--HFGSEFQELRTLVVDRRKIRAEVTKYHLQRLGMSVDVTYSLNSACS 1027
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN---GHVFKLPKLILLAT 797
N S +IL++KD W ++ + + N G LPK+ LLAT
Sbjct: 1028 CLSNVCNMS----MLAMILIDKDAW--DKEYHILYTIKKRRQNGIKGDPLNLPKIFLLAT 1081
Query: 798 NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL 857
++S +E D+ K+ G D ++MKPL S + C ++ L TENKR + V S LL
Sbjct: 1082 HLSSNEQDELKSVGVIDDILMKPLWFSSLIQCYRESLGTENKRVNRKKV----SKLGNLL 1137
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
K+ILVVDDN VNR VA G L+K+GA V S +AAL L+ PH FDACFMD+QMPEM
Sbjct: 1138 IDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLELPHNFDACFMDLQMPEM 1197
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DGFEATR+IR +ES+ NE++ G +S + H+PILAMTAD ++ +EC+KCGM
Sbjct: 1198 DGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPILAMTADSTQSSNEECIKCGM 1257
Query: 978 DGYVSKPFEEENLYRELAKFFKS 1000
+ YVSKPFEEE LY +A+FFKS
Sbjct: 1258 NDYVSKPFEEEQLYMAMARFFKS 1280
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHV 93
RA K L+LW G I +++ + +K + ++C++R R+L ++NV+ +
Sbjct: 103 RACRRKPLLLWFFGFVAIG-TVWFILSFNSKYLMSKENEAICEERERILLQRYNVSRKQI 161
Query: 94 HALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHG 153
HAL L+ S DQ + + L SG+ P+++ + ++ +++H
Sbjct: 162 HALASLL---------SGSDQ-ILSNCIDERRLQMLLGSGMVSTPQLMCPENQELQKEHT 211
Query: 154 MTITTMKS-EPSPIRDEYA 171
+ T++ E PI D+Y
Sbjct: 212 CVVDTVEPIEQCPILDDYV 230
>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
Length = 942
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/954 (54%), Positives = 659/954 (69%), Gaps = 45/954 (4%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR E L +MCD+RARMLQDQFNV++NHVHAL ILVSTFH+ KNPSA+DQ TF ++T RT
Sbjct: 8 RRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTT 67
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSE--------------PSPIRDEYA 171
FERPL+SGVAYA +V+ ++RE FE++ G I M++E PSP++DEYA
Sbjct: 68 FERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYA 127
Query: 172 PVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYK 231
PV+F QE + H+ S+DMMSG+EDR+NILR+RATGK LT PF LL S+HLGVVLTF VYK
Sbjct: 128 PVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYK 187
Query: 232 SKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMY 291
LPP +T EERI+AT GY+G FDV SLVE LL QLA Q I+V +YD+TN + P MY
Sbjct: 188 YDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMY 247
Query: 292 GDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYIL 351
D LH S +DFGD RKH M CR+ S PW+A+ + + +I LLVGYI+
Sbjct: 248 DSDVIASDD--LHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYII 305
Query: 352 YGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD 411
Y + + ED++ M++LK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+
Sbjct: 306 YATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 365
Query: 412 LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK 471
L +TQRD+ TAQ GK+LI LINEVLD AKIE+ K+ELEAV F++R ILD+V+SLFSEK
Sbjct: 366 LDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEK 425
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531
S KGIELAV VSD+VP+ ++GDP RFRQIITNLVGNS+KFTE+GHIF++VHL E K
Sbjct: 426 SWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRK 485
Query: 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIIN 591
+A D+T E T +NTLSGLE A+ R + + F+ D
Sbjct: 486 MEALDDTSPE-NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD------------ 532
Query: 592 MMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651
S+ + V L+V VEDTGIGI AQ R+F PFMQAD STSR YGGTGIGLSI+K L
Sbjct: 533 ---SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRL 589
Query: 652 VELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711
VELM G+I FVS+P V STFSFTA+F + ++ DIK+ E PP F+G++A+VVD +
Sbjct: 590 VELMGGEIGFVSKPGVSSTFSFTAIFKENRKDP-GDIKRYCPEPTPPDFQGMRALVVDGR 648
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
RA VT YHL RLGI ++++ + A S SS K +++LV+K+ W GEDS
Sbjct: 649 CARAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSV-KSSLNMVLVDKEAW--GEDS 705
Query: 772 G--FNAQLLDWKPNGHVFK---LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
G F L+D + G + +PK LLA +I+ + D + G++++ I KPLR S +
Sbjct: 706 GLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNS-IRKPLRLSTV 764
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
AACL + L GR + S + +L GK ILVVDDN VNR+VAAGALKK+GA V
Sbjct: 765 AACLSKALGVG---LTGRRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIV 821
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
C S K A+ +LQ PH FDACFMD+QMPEMDGFEATR +R +ESK N+ + G S +
Sbjct: 822 TCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEI 881
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ H+PILAMTADVI ATF+ C++CGMDGYV+KPFEE+ LY +A F ++
Sbjct: 882 YGNKAHWHVPILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAVAHFLEA 935
>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
Length = 942
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/954 (54%), Positives = 659/954 (69%), Gaps = 45/954 (4%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR E L +MCD+RARMLQDQFNV++NHVHAL ILVSTFH+ KNPSA+DQ TF ++T RT
Sbjct: 8 RRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTT 67
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSE--------------PSPIRDEYA 171
FERPL+SGVAYA +V+ ++RE FE++ G I M++E PSP++DEYA
Sbjct: 68 FERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYA 127
Query: 172 PVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYK 231
PV+F QE + H+ S+DMMSG+EDR+NILR+RATGK LT PF LL S+HLGVVLTF VYK
Sbjct: 128 PVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYK 187
Query: 232 SKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMY 291
LPP +T EERI+AT GY+G FDV SLVE LL QLA Q I+V +YD+TN + P MY
Sbjct: 188 YDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMY 247
Query: 292 GDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYIL 351
D LH S +DFGD RKH M CR+ S PW+A+ + + +I LLVGYI+
Sbjct: 248 DSDVIASDD--LHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYII 305
Query: 352 YGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD 411
Y + + ED++ M++LK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+
Sbjct: 306 YATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 365
Query: 412 LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK 471
L +TQRD+ TAQ GK+LI LINEVLD AKIE+ K+ELEAV F++R ILD+V+SLFSEK
Sbjct: 366 LDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEK 425
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531
S KGIELAV VSD+VP+ ++GDP RFRQIITNLVGNS+KFTE+GHIF++VHL E K
Sbjct: 426 SWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRK 485
Query: 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIIN 591
+A D+T E T +NTLSGLE A+ R + + F+ D
Sbjct: 486 MEALDDTSPE-NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD------------ 532
Query: 592 MMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651
S+ + V L+V VEDTGIGI AQ R+F PFMQAD STSR YGGTGIGLSI+K L
Sbjct: 533 ---SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRL 589
Query: 652 VELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711
VELM G+I FVS+P V STFSFTA+F + ++ DIK+ E PP F+G++A+VVD +
Sbjct: 590 VELMGGEIGFVSKPGVSSTFSFTAIFKENRKDP-GDIKRYCPEPTPPDFQGMRALVVDGR 648
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
RA VT YHL RLGI ++++ + A S SS K +++LV+K+ W GEDS
Sbjct: 649 CTRAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSV-KSSLNMVLVDKEAW--GEDS 705
Query: 772 G--FNAQLLDWKPNGHVFK---LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
G F L+D + G + +PK LLA +I+ + D + G++++ I KPLR S +
Sbjct: 706 GLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNS-IRKPLRLSTV 764
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
AACL + L GR + S + +L GK ILVVDDN VNR+VAAGALKK+GA V
Sbjct: 765 AACLSKALGVG---LTGRRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIV 821
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
C S K A+ +LQ PH FDACFMD+QMPEMDGFEATR +R +ESK N+ + G S +
Sbjct: 822 TCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEI 881
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ H+PILAMTADVI ATF+ C++CGMDGYV+KPFEE+ LY +A F ++
Sbjct: 882 YGNKAHWHVPILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAVAHFLEA 935
>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
Length = 1201
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/987 (52%), Positives = 669/987 (67%), Gaps = 44/987 (4%)
Query: 33 NRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNH 92
+R W +AL++ ++ S+ I+ M + RR E L +MCD+RARMLQDQFNV++NH
Sbjct: 236 SRKWSKRALLIGVLFGLCSSVCIFSCMYADVVARRIENLANMCDERARMLQDQFNVSMNH 295
Query: 93 VHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQH 152
VHAL ILVS+FH+ K+PSA+DQ TF ++T RT FERPL+SGVAYA +V+ +R+QFE QH
Sbjct: 296 VHALAILVSSFHHGKDPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHNERQQFEEQH 355
Query: 153 GMTITTM--------------KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENI 198
G I M K EPSP++DEYAPV+F QE + H+ S+DMMSG+ED +NI
Sbjct: 356 GWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDHDNI 415
Query: 199 LRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVE 258
LR+ +TGK LT PF+LL S+HLGVVLTF VYK LPP +T +ERI AT GY+G FDV
Sbjct: 416 LRSWSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIHATLGYLGASFDVP 475
Query: 259 SLVENLLGQLAGNQAILVNVYDMTNASDPLIMYG-DQNQDGDMSLLHESELDFGDSFRKH 317
SLV+ LL QLA + I+VN+YD TN + P+ MYG D GD LH S +DFGD RKH
Sbjct: 476 SLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGD---LHISSIDFGDPTRKH 532
Query: 318 KMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEA 377
+M CR+ + S PW+A+ + + +I LLVG+I+Y + K E D+ M+ELK +AEA
Sbjct: 533 EMHCRFKHEPSLPWSAIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQAEA 592
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
AD+AKSQFLATVSHEIRTPMNG+LGML +L+DT+L +TQ+D+ TAQ GK LI LINEV
Sbjct: 593 ADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEV 652
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD AKIE+ ++ELEAV F++R ILD+V+SLF +KS+ KGIELAV VSD+VP+ ++GDP R
Sbjct: 653 LDLAKIESGRIELEAVPFDVRDILDNVISLFYDKSQAKGIELAVLVSDQVPDVLIGDPWR 712
Query: 498 FRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ-F 556
FRQIITNLVGNS+KFTE+GHIFV+VHL + + + ++ E + S +
Sbjct: 713 FRQIITNLVGNSMKFTEQGHIFVQVHLVKE--LNRKGNNFCDVSAHNREILYDSDNSMLW 770
Query: 557 NTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIP 616
NTLSGLE AD S + F + SNG ++ + L V VEDTGIGI
Sbjct: 771 NTLSGLEVADSWRSLENFTMFKN---------------SNGETDTIRLAVRVEDTGIGIT 815
Query: 617 LSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676
AQ R+F PFMQADSSTSR YGGTGIGLSI+K LVELM G+I F S+ VGSTFSFTA+
Sbjct: 816 KDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAI 875
Query: 677 FGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK 736
F K D+K+ SE P F+G++A+++D + RA VT YHL RLGI + ++ +
Sbjct: 876 F-KENRGCPGDMKRYYSEPTPLDFQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSE 934
Query: 737 DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG-HVFK--LPKLI 793
S+++ + K PD++LV+ + W G F + +D + G H F +PK I
Sbjct: 935 SESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHKFSQPMPKTI 994
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
LL ++IS E D + GF D I KPLR S I ACL++ L RQ R + S
Sbjct: 995 LLGSSISPVESDYLRLTGFGD-CIRKPLRLSTIVACLRKTLGVGVTRQQSR---DQSLVL 1050
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
Q +L GK+ILVVDDN VNR VAAG+LKK+G+ V C S A+D L+ PH FDACFMD+Q
Sbjct: 1051 QSVLTGKQILVVDDNAVNRKVAAGSLKKYGSKVTCVDSGSDAIDMLKPPHTFDACFMDVQ 1110
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDGFEATR IR +E K N+ +M G S + + H+PILAMTADVI ATF++C+
Sbjct: 1111 MPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQATFEKCM 1170
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKS 1000
+CGMDGYVSKPFEE+ LY +A F ++
Sbjct: 1171 QCGMDGYVSKPFEEQQLYFAVAHFLET 1197
>gi|88714407|gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens]
Length = 1082
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1011 (51%), Positives = 687/1011 (67%), Gaps = 55/1011 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W KA V+W++ M +S+S++ M + RR+E L +MC+ RARML++QF ++NHV A
Sbjct: 75 WHTKAFVVWVVFMGAVSLSVFLAMRFDMLERRRENLANMCEGRARMLEEQFKASMNHVRA 134
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
LT L++TFH K PSA++Q+TFA Y RTAFERPL+SGVA+A RV+ A R+ FE HG T
Sbjct: 135 LTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAFAERVLHANRKLFESAHGWT 194
Query: 156 ITTMKSEP-SPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFR 214
I M S+ DEYAP Q+ +S++ SLDMMSG+EDRENI+RAR GK LT+PFR
Sbjct: 195 IKEMYSKDLQQDFDEYAPTTMSQKSLSYLTSLDMMSGQEDRENIIRARELGKGALTKPFR 254
Query: 215 LLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAI 274
LL S HLGVV TF VY + L + E+RIKATAGY+GG FDVE+LVENLL Q+AG+Q I
Sbjct: 255 LLESKHLGVVFTFAVYCTDLHDDAKKEDRIKATAGYLGGAFDVETLVENLLRQMAGSQII 314
Query: 275 LVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTAL 334
VNVYD+TN + PL+MYG N + + + S LDFGD R+H+M CR+ + A PWTA+
Sbjct: 315 AVNVYDITNETMPLVMYGHTNVEKSKNT-YVSSLDFGDPARRHEMRCRFKEDALPPWTAI 373
Query: 335 TTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIR 394
+T+ +FVI LVG++L+ + I KVE++ QELK+RA+ A +AKSQFLATVSHEIR
Sbjct: 374 STSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHEIR 433
Query: 395 TPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVL 454
TPMNG+LGML +L +T L+ Q DYA+TA GKALI LINEVLD+AKIE+ ++ELE V
Sbjct: 434 TPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKALINLINEVLDQAKIESGRVELEHVP 493
Query: 455 FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE 514
F+LRAILDDVLSLF +SR+ GIELAV+VS KVP+ ++GDPGRFRQIITNLVGNS+KFTE
Sbjct: 494 FDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKILVGDPGRFRQIITNLVGNSIKFTE 553
Query: 515 RGHIFVKVHLAE---RTMVKTDAKDETLLNGGTEE-GVCRSGTGQFNTLSGLEAADGRNS 570
GHIFV VHL E M + + + L+G E G +FNTLSG E AD RNS
Sbjct: 554 AGHIFVCVHLNEDVNNLMDGDEGEADDTLDGEVESAGPLTDMNYRFNTLSGRETADYRNS 613
Query: 571 WDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMVCVEDTGIGIPLSAQERVFMPFM 628
W+ F+ L+ E +S+ S ++ N + V L++ VEDTG+GIPL Q+RVFMPFM
Sbjct: 614 WEMFERLLAQE--KSHRSGVDQDTRNYCDLNGAVNLVISVEDTGVGIPLHVQDRVFMPFM 671
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
QADSSTSR+YGGTGIGLSIS+ LV+LM G++ FVS P+VGSTF+FTA + V E I
Sbjct: 672 QADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPKVGSTFTFTAELQRVPANVPEHI 731
Query: 689 KQS------KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDA---- 738
+ ++ L F+G++ +VVD + VR VT++HL RLG+ V+++ + +A
Sbjct: 732 LREGRNCYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLQRLGLRVEVAHTPGEAAELL 791
Query: 739 SSTAKNGLTSSEDK---FQPDI--ILVEKDCWISGEDSGFNAQLLD-------------- 779
++T G S D F DI I V+KD W G F + L +
Sbjct: 792 TTTVDRGNRGSRDSQRSFATDIELIFVDKDAWGPGTWVNFRSLLTESFIGQLSHNQSGLT 851
Query: 780 ---------WKPNGH--VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
PNG+ + + K++L+AT++++ E KA GF DTV+ KPLRAS++AA
Sbjct: 852 SYQYRSAAGRLPNGYPTLNSMKKMVLVATSMNEMELSVVKASGFVDTVVRKPLRASLVAA 911
Query: 829 CLQQVLST-ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
L+++L + R G+ + G + Q LL GK+ILVVDDN VNR VAAGAL K+GA V+
Sbjct: 912 SLEEILGVGDGGRDQGQNLQGGINSLQNLLTGKRILVVDDNPVNRKVAAGALNKYGAQVD 971
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
C S +AA+ L+ PH +DACFMD+QMPEMDGFEATR IR+ E+ A + G S G
Sbjct: 972 CVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGFEATRLIRKAEAAAVDNWQAGRFSSFGR 1031
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LH+PILAMTADVI AT +EC++CGMDGYV+KPF+E +LY+ +AK F
Sbjct: 1032 ----RLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHHLYQAVAKHF 1078
>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
Length = 1043
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/1031 (50%), Positives = 674/1031 (65%), Gaps = 101/1031 (9%)
Query: 17 VNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCD 76
+++ IG T ++ RA K V W++G+ +S+ I+ M + +R+E L SMCD
Sbjct: 66 IHQHYYQYIGCTKVK--RAMWKKLFVAWLVGLTMLSLCIFCCMSFQATEKRRETLASMCD 123
Query: 77 QRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAY 136
+RARML DQFNV++NH+ AL+IL+ST H+ +PSA+DQ TFA YT RTAFER LL V
Sbjct: 124 ERARMLHDQFNVSMNHIQALSILISTLHHATSPSAIDQRTFARYTERTAFER-LLQVVCI 182
Query: 137 APRVVDAQREQFERQHGMTITTM----------------KSEPSPIRDEYAPVMFYQEPM 180
+ ++REQFE+Q G TI M K EPS I++EYAPV+F Q+ +
Sbjct: 183 CCKGTPSEREQFEKQQGWTIKRMDTVEEKQVHKDDYDPEKLEPSHIQEEYAPVIFAQDTL 242
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
SHV S+D +SG+ DREN++RAR +GK VLT PFRLL ++ LGV+LTF VY LP +T
Sbjct: 243 SHVISVDTLSGKGDRENVVRARESGKGVLTAPFRLLKTNRLGVILTFAVYSRDLPSNATP 302
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
ERI+AT GY+GG FDVESLVE LL QLA Q ++VNVYD+TN + + MY N GD
Sbjct: 303 NERIQATNGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDITNHTHHIPMYSS-NVLGD- 360
Query: 301 SLLHESELDFGDSFRKHKMICR-----------------YHQKASTPWTALTTAFFLFVI 343
+ H S L+FGD FRKH+M CR + QK PW ++TT+ + VI
Sbjct: 361 TFYHVSTLNFGDPFRKHEMYCRKSNAAKGACIFILLQNRFKQKPPRPWLSITTSIGILVI 420
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
LLVG+I Y I KVEDD +M+ELK RAEAADVAKSQFLATVSHEIRTPMNG+LGM
Sbjct: 421 ALLVGHIFYATVNRIAKVEDDCREMRELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGM 480
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
L +L+DTDL TQ+++ +TAQ+ GKAL++LINEVLD+AKIEA KLELEAVLF+LRAILDD
Sbjct: 481 LHMLMDTDLDVTQQEFVRTAQVSGKALMSLINEVLDQAKIEAGKLELEAVLFDLRAILDD 540
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
VLSLFSEKS+ KG+EL V+VSD+VPE ++GDPGRFRQI TNL+GNS+KFT++GH+FV VH
Sbjct: 541 VLSLFSEKSQEKGVELGVYVSDQVPELLIGDPGRFRQITTNLMGNSIKFTDKGHVFVTVH 600
Query: 524 LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGF 583
L E + T E+ T E NTLSG AD R SW+ FK F
Sbjct: 601 LVEEVVYSTKVDKES-----TSE----------NTLSGFPVADSRRSWEGFK------AF 639
Query: 584 QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643
+ + +S+G + + L+V VEDTG GIPL AQ +F PFMQ S SR +GGTGI
Sbjct: 640 SQEGPLGSFSSSSG--DLINLIVSVEDTGEGIPLEAQPHIFTPFMQVGPSISRKHGGTGI 697
Query: 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF-------GKCK-EYVFEDIKQSKSED 695
GLSISKCLV LM G+I FVS P++GSTF+FTA+F +CK + + + SE
Sbjct: 698 GLSISKCLVHLMSGEIGFVSIPKIGSTFTFTAIFTNGLPSSNECKTQQIINQPHPASSE- 756
Query: 696 LPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP 755
FKG+ A+++D +PVRA V++YH+ RLGI V+M S + S N
Sbjct: 757 ----FKGMTAMIIDHRPVRAKVSRYHIQRLGIHVEMVSDLNQGLSNVANA------NIVI 806
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL-----PKLILLATNISKDECDKAKAG 810
++IL+E++ W DSG ++ +D ++ K+ PK+ +L + ++ +
Sbjct: 807 NMILIEQEVW--DRDSGMSSHFVD-----NICKIVHVVPPKMFILVKS-TRSRASAVISS 858
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENK-RQAGRGVPNGSSFHQGLLRGKKILVVDDNG 869
TVI KPLRASM+AA LQ+ + +NK +P+ S H LLRG++IL+VDDN
Sbjct: 859 VHDPTVITKPLRASMLAASLQRSMGFQNKGTHRNSDLPSLSLRH--LLRGRRILIVDDNS 916
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
VNRMVAA ALKK+GA V C +S K A+ L+ PH FDACFMDIQMPE+DGFEATR IR M
Sbjct: 917 VNRMVAAAALKKYGAEVVCVSSGKEAISSLKPPHQFDACFMDIQMPEIDGFEATRTIRDM 976
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
E N +M SV H+PIL MTADVI AT + CL+CGMDGYVSKPFE E
Sbjct: 977 ELSVNSEM-----SVYDIDNVSNWHVPILTMTADVIQATQEACLRCGMDGYVSKPFEAEQ 1031
Query: 990 LYRELAKFFKS 1000
LY E+++FF+S
Sbjct: 1032 LYIEVSRFFQS 1042
>gi|255581802|ref|XP_002531702.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223528678|gb|EEF30693.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 922
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/946 (54%), Positives = 640/946 (67%), Gaps = 53/946 (5%)
Query: 75 CDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGV 134
C+++A++L FNV+ + + AL VS F S DQ TF EYT RTAFERPL SGV
Sbjct: 9 CEEKAQVLLQHFNVSKSQLQAL---VSLF------SESDQKTFGEYTERTAFERPLTSGV 59
Query: 135 AYAPRVVDAQREQFERQHGMTITTMKSE--------------PSPIRDEYAPVMFYQEPM 180
AYA +V+ ++REQFE++HG TI M++E P+PI+DEYAPV+F QE +
Sbjct: 60 AYALKVLHSEREQFEKKHGWTIRKMETEDQTLVQDCIPEKLDPAPIQDEYAPVIFSQETV 119
Query: 181 SHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTV 240
+H+ S+DMMSG+EDRENILRARA+GK VLT PF+LL S+HLGVVLTF VY + LP +T
Sbjct: 120 AHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPLNATP 179
Query: 241 EERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDM 300
EERI+AT GY+G +DV SLVE LL QLA Q I+VNVYD TNAS P++MYG D
Sbjct: 180 EERIEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPILMYGTDYVD--T 237
Query: 301 SLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVK 360
LLH S LDFGD R+H+M C + QK + PWTA+ + + VI LLVG+I Y A I K
Sbjct: 238 GLLHISNLDFGDPMRRHEMHCSFKQKPTLPWTAINASVGVLVITLLVGHIFYAAISRIAK 297
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VE+D+ +M LKVRAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTDL + Q D+A
Sbjct: 298 VEEDYREMMMLKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDANQMDFA 357
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QTA GK LI+LINEVLD+AKIE+ +LELEAV F+LR++LD++LSLFS KS KGIELA
Sbjct: 358 QTAHASGKDLISLINEVLDQAKIESGRLELEAVSFDLRSVLDNILSLFSGKSNEKGIELA 417
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETL 539
++VS +VPE V+GDPGRFRQIITNLVGNSVKFT ++GHIFV VHLA+ + +D L
Sbjct: 418 IYVSSQVPEVVIGDPGRFRQIITNLVGNSVKFTRDKGHIFVSVHLADEVRSTLNVRDAVL 477
Query: 540 LNGGTEEGVCRSGTGQF-NTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
G + + + NTLSG D SW FK L + +
Sbjct: 478 KQG---LNLVQDMQNEIDNTLSGCPVVDRWKSWANFKRLNSKDTMEE------------- 521
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
SE + L+V VEDTG+GIPL A R+F PFMQADSSTSR YGGTGIGLSISKCLV+LM G+
Sbjct: 522 SEMIRLLVTVEDTGVGIPLDAHSRIFSPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGE 581
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I FVS P GSTFSFTA F K D K + +G +A+V+D++ +RA VT
Sbjct: 582 IGFVSEPGTGSTFSFTASFRKGDLRSL-DTKWQPYDPTGLELQGWRALVIDKRSIRAEVT 640
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGL-TSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
+YHL RLGI M+SS+K A S G TS+ F ++L++KD W + F L
Sbjct: 641 RYHLQRLGITADMASSLKSACSYQSGGRHTSAPADF--GLVLIDKDAWHNETGFAFRQLL 698
Query: 778 LDWKPNG---HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
+ K NG + LPK+ LLAT I+ +E + + G D +IMKPLR S++ +C Q+ +
Sbjct: 699 KESKQNGGTEMIIDLPKIFLLATTINPEERRELLSAGLVDNIIMKPLRLSVLFSCFQEAI 758
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ K Q R P S Q LLR K+ILVVDDN VNR VA GALKK+GA V C S K
Sbjct: 759 GSGKKSQVNRRKP---STLQNLLREKRILVVDDNKVNRRVAEGALKKYGAIVTCVESGKE 815
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
AL+ L+ PH FDACFMD MPE+DGFEATR+IR E + NEQ+ +G S++ H
Sbjct: 816 ALELLKPPHTFDACFMDRHMPELDGFEATRQIRARERQFNEQIASGEVSMEMFGNVAYWH 875
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
PILAMTADVI AT +EC KCGMD +VSKPFEEE LY +A FF+S
Sbjct: 876 TPILAMTADVIQATNEECRKCGMDDFVSKPFEEEQLYNAVAPFFES 921
>gi|168053506|ref|XP_001779177.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162669436|gb|EDQ56023.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1123
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/1038 (51%), Positives = 672/1038 (64%), Gaps = 90/1038 (8%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K V W++ M +S+S+Y M + RR+E L +MC+ RARML+DQF ++NHV A
Sbjct: 97 WHTKVFVFWVVFMGAVSLSVYFAMRFDMLERRRENLANMCEGRARMLEDQFKASMNHVRA 156
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
LT L++TFH K PSA++Q+TFA Y RTAFERPL+SGVAYA RV+ A R FE HG T
Sbjct: 157 LTALLTTFHLGKQPSAINQETFATYAARTAFERPLMSGVAYAERVLHANRAMFELTHGWT 216
Query: 156 ITTMKS-EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFR 214
I M S E DEYAP QE + ++ SLDMMSG+EDRENI+RAR +GK LT PFR
Sbjct: 217 IKEMFSKERQQDFDEYAPTTMSQETVFYLTSLDMMSGQEDRENIIRARESGKGALTNPFR 276
Query: 215 LLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAG------------------------- 249
LL S HLGVV TF VY + LP +T E+RIKATAG
Sbjct: 277 LLESKHLGVVFTFAVYSTDLPFDATKEDRIKATAGLQIGNRIILVQYMESSRTSCTITWK 336
Query: 250 -------------YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQN- 295
Y+GG FDVE+LVENLL Q+AG+Q I VNVYD+TN + PL+MYG N
Sbjct: 337 LCLNFLGIHDCRSYLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNDTMPLVMYGHTNV 396
Query: 296 QDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAA 355
+ D + + S LDFGD R H+M CR+ + A PWTA++T+ +FVI LVG++L+ +
Sbjct: 397 ERSDNTYV--SLLDFGDPLRNHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASR 454
Query: 356 IHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
I KVE++ QELK+RA+ A +AKSQFLATVSHEIRTPMNG+LGML +L+DT L+ST
Sbjct: 455 NRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTPLNST 514
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
Q DYA+TAQ GKALI LINEVLD+AKIE+ +LELE V F+LRAILDDVLSLF KSR
Sbjct: 515 QLDYARTAQASGKALITLINEVLDQAKIESGRLELEHVPFDLRAILDDVLSLFHGKSRAS 574
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE--RTMVKTD 533
GIELAV+VS+KVP+ ++GDPGRFRQII NLVGNS+KFTE GHIFV VHL E ++ D
Sbjct: 575 GIELAVYVSEKVPKILIGDPGRFRQIIINLVGNSIKFTEAGHIFVCVHLNEDVNMVMGWD 634
Query: 534 AKD-ETLLNGGTEEGVCRSGTG-QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIIN 591
D + L+G E G QFNTLSG E AD RNSW+ F+ L+ E QS S +
Sbjct: 635 GGDADDTLDGEVESARPLIEKGHQFNTLSGRETADLRNSWEMFERLLTQE--QSYRSAGD 692
Query: 592 MMASNGGSEDVT-LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
N S DV L+V VEDTG+GIPL Q+RVF PFMQADSSTSR YGGTGIGLSIS+C
Sbjct: 693 RETWNYDSNDVVELVVSVEDTGVGIPLHVQDRVFTPFMQADSSTSRTYGGTGIGLSISRC 752
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE------DLPPGFKGLK 704
LVELM G++ FVS P VGSTF+FTA F + V E I + S LP F+G++
Sbjct: 753 LVELMSGEMDFVSSPGVGSTFTFTAEFQRVPANVPESILREGSNCLLQTPPLPTCFQGMR 812
Query: 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC 764
+VVD + V A + L +++ + S +N S + +I V+KD
Sbjct: 813 VLVVDGRQVEVAHSVPEAAEL-----LTTVVNRGSRGTRNSRGSISADIE--MIFVDKDA 865
Query: 765 WISGEDSGFNAQLLDW---KPNGH---------------------VFKLPKLILLATNIS 800
W G F + L + P+ + V + K++L+AT+++
Sbjct: 866 WGPGTGMNFRSLLSECYMESPSSYHNARASYQYRLTAGRLPIGFQVHSMQKMVLVATSMN 925
Query: 801 KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK 860
E + KA GF DTVI KPLRAS++AACL+Q+L + R G+ + G + Q LL GK
Sbjct: 926 GLELEMVKASGFVDTVIRKPLRASLVAACLKQILGVGDGRDPGQELRGGVNSLQNLLSGK 985
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILVVDDN VNR VAAGAL K+GA VEC S +AA+ KL+ PH FDACFMD+QMPEMDGF
Sbjct: 986 RILVVDDNPVNRKVAAGALNKYGAQVECVHSGRAAIQKLKPPHNFDACFMDVQMPEMDGF 1045
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+AT IR+ E+ A +Q + G G H+PILAMTADVI AT +EC++CGMDGY
Sbjct: 1046 QATGLIRKAETLAADQWLAAGLPTFGV----RFHVPILAMTADVIQATSEECMRCGMDGY 1101
Query: 981 VSKPFEEENLYRELAKFF 998
V+KPF+E LY+ +AK F
Sbjct: 1102 VAKPFDEHQLYQAVAKHF 1119
>gi|302768761|ref|XP_002967800.1| cytokinin receptor [Selaginella moellendorffii]
gi|300164538|gb|EFJ31147.1| cytokinin receptor [Selaginella moellendorffii]
Length = 965
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/967 (54%), Positives = 649/967 (67%), Gaps = 79/967 (8%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR+E L +MC +RA MLQDQFN ++NHV +LT LV+TFH K PSALDQ A T+
Sbjct: 44 RRRETLANMCKERAWMLQDQFNSSMNHVRSLTALVTTFHLAKQPSALDQ---ARQFFWTS 100
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIR--DEYAPVMFYQEPMSHV 183
FERPL+SGVAYA +V QR FE + G +I M+S + DEYAP + Q ++H+
Sbjct: 101 FERPLMSGVAYAHKVEHWQRRAFEEEMGWSIKEMRSNAPRAQNLDEYAPTVLSQNTLAHL 160
Query: 184 KSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEER 243
S+DMMSGEEDRENILR+RA+GK LT PFRLL S HLGVVLTF VYK+ LP +T +R
Sbjct: 161 ASVDMMSGEEDRENILRSRASGKGALTSPFRLLESDHLGVVLTFTVYKTDLPDDATPAQR 220
Query: 244 IKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLL 303
I+ATAGY+GG FD ESLVENLL QL+ +Q I+VNV D+TN S+PL+MYG DG+ +
Sbjct: 221 IQATAGYVGGAFDFESLVENLLRQLSESQTIIVNVNDVTNKSNPLVMYGPNIPDGNE--I 278
Query: 304 HESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVED 363
+L+FGD FRKH+M CR++++AS WTA+TT F + VI LLV I Y A I KVE+
Sbjct: 279 EVCQLEFGDPFRKHEMRCRFNKEASVVWTAITTTFGIVVIVLLVAQIFYAAGNRIAKVEE 338
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D+ KM++LKVRAE+ADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L STQRDYA TA
Sbjct: 339 DYRKMEDLKVRAESADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTA 398
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
GK LI LINEVLD+AKIE+ ++ELE V F LR ILDD+L+LFS ++++KGIELA +V
Sbjct: 399 LESGKQLIKLINEVLDQAKIESGRMELETVPFKLRTILDDILTLFSAENKDKGIELAAYV 458
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
S++VP+ VLGDP R QI+TNLVGNS+KFT+RGHIFV VHL E A+ E
Sbjct: 459 SERVPDVVLGDPVRLHQIVTNLVGNSIKFTDRGHIFVSVHLEEDVKAAMSAQCEACSKQV 518
Query: 544 TEEG------VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
TE G +TLSGLEAAD RN+W+ FK ++ E + +
Sbjct: 519 TETQDHSDKLNTVDAAGSCSTLSGLEAADRRNNWETFKLILKQEKSR-------LTTHKQ 571
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
+ V L+ VEDTG+GIP+ AQERVF PFMQADSSTSR+YGGTGIGLSISKCLVELM+G
Sbjct: 572 PVDTVKLVFSVEDTGVGIPVHAQERVFSPFMQADSSTSRNYGGTGIGLSISKCLVELMKG 631
Query: 658 QISFVSRPQVGSTFSFTAVF--GKCK----EYVFEDIKQSK----SEDLPPGFKGLKAVV 707
+I FVS VG+TF FT F G + + E KQ + S L GLKA+V
Sbjct: 632 EIGFVSSLGVGTTFWFTVNFKVGDLEALEAAHSAECSKQQRAAHSSTPLTTQLSGLKALV 691
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
VD +PVR+ VT+YHL RLGI V ++S + A + ++ D+IL++KD W S
Sbjct: 692 VDGRPVRSEVTRYHLRRLGIQVDVASDVSSALAHQRSK--------NLDMILIDKDAWGS 743
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
+ +++ + P PKL+LLA + D+ KAKA GF+D VI KPLRAS IA
Sbjct: 744 STGLSYPSKIKEAGPT----LAPKLVLLAFD---DDEHKAKAAGFSDNVIKKPLRASYIA 796
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFH----------------QGLLRGKKILVVDDNGVN 871
L++ L + KR+ SS LL GK ILVVDDN VN
Sbjct: 797 NHLEKALGLDLKRRTRESSTPTSSSSDTSASINSGSGSSNNLHSLLTGKWILVVDDNKVN 856
Query: 872 RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931
R VAAGAL+K+GA VEC S + A++KL+ PH FDACFMDIQMPEMDGFEATRRIR E
Sbjct: 857 RRVAAGALQKYGARVECVESGRLAIEKLEPPHKFDACFMDIQMPEMDGFEATRRIRCFEK 916
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
+ GGS H+PILAMTADVI AT+DEC +CGMD YVSKPFEE+ LY
Sbjct: 917 R-------GGS-----------HVPILAMTADVIQATYDECRRCGMDDYVSKPFEEKQLY 958
Query: 992 RELAKFF 998
R +AKFF
Sbjct: 959 RAVAKFF 965
>gi|413933249|gb|AFW67800.1| putative histidine kinase family protein [Zea mays]
Length = 806
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/817 (60%), Positives = 597/817 (73%), Gaps = 23/817 (2%)
Query: 188 MMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKAT 247
MMSGEEDRENILR+RA+GKAVLTRPFRL+ S+HLGVVLTFPVY + LP + E+R+ AT
Sbjct: 1 MMSGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAAT 59
Query: 248 AGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESE 307
AGY+GG FDVESLVENLL QLAGNQ ++VNVYD+TN S+PL+MYG + G+ S H
Sbjct: 60 AGYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSPSHICM 119
Query: 308 LDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHK 367
LDFGD FRKH M+CRY K PW+A++T +FVI +LVGYI A V++D K
Sbjct: 120 LDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRK 179
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M+ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +LLDTDL+STQRD+AQTAQ+CG
Sbjct: 180 MEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCG 239
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KALI+LINEVLDRAKIEARKL+LE+V F+LR+ILDDV+SLFS KSR KGIEL V+VS++V
Sbjct: 240 KALISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERV 299
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL---LNGGT 544
PE +LGDPGRFRQIITNLVGNS+KFTERGHIFV+VHLA+ + + T++K E + +NG T
Sbjct: 300 PEILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHT 359
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
+E + + NTLSG EAAD RNSW+ FK L+ E N M S+ VTL
Sbjct: 360 DEKTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEK--------NEMPYESVSDKVTL 411
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
+V VEDTGIGIPL AQ +VF PFMQADSSTSR YGGTGIGLSISKCLVELM GQI+FVSR
Sbjct: 412 VVSVEDTGIGIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSR 471
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
P VGSTF+FTAV +C D K LP FKGL A++VD +PVRA VT+YHL R
Sbjct: 472 PHVGSTFTFTAVLKRCDRSAIGDSKPVMLHPLPSSFKGLSALLVDRRPVRATVTKYHLQR 531
Query: 725 LGIMVKMSSSIKDASS--TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
LGI + ++I+ A + +NG + + K QP ++L+E D W D ++LL+ K
Sbjct: 532 LGIACDVVATIELALGVLSGRNGSSLTSMK-QPCMLLIESDSWGFNIDVSLRSRLLEMKQ 590
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
NGH LPK+ILLA E K K D+VI KPL+AS +AACL Q L K+ +
Sbjct: 591 NGHTHVLPKIILLAAA----ESGKLKEHYAVDSVITKPLKASALAACLFQTLGI--KQSS 644
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
N S + GLL GK ILVVDDN VN VAAG LKKFGA VEC S K AL LQ P
Sbjct: 645 NERSDNSGSLY-GLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVP 703
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN-GGSSVDGTAKRDELHLPILAMT 961
+ F C MDIQMPEMDGFEAT++IR ME+KANEQ + S +DG + LP+LAMT
Sbjct: 704 YKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDNSEIDGATRAARWRLPVLAMT 763
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
ADVI AT +EC KCGMDGYV+KPFEE+ L++ L KF
Sbjct: 764 ADVIQATHEECTKCGMDGYVTKPFEEKQLFQALQKFL 800
>gi|168046338|ref|XP_001775631.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162673049|gb|EDQ59578.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1008
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/978 (52%), Positives = 671/978 (68%), Gaps = 28/978 (2%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W KA V+W++ M +S+S++ M + RR+E L +MC+ RARML++QF ++NHV A
Sbjct: 40 WHTKAFVVWVVFMGAVSLSVFLAMRFDMLERRRENLANMCEGRARMLEEQFKASMNHVRA 99
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
LT L++TFH K PSA++Q+TFA Y RTAFERPL+SGVA+A RV+ A R+ FE HG T
Sbjct: 100 LTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAFAERVLHANRKLFESAHGWT 159
Query: 156 ITTMKSEP-SPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFR 214
I M S+ DEYAP Q+ +S++ SLDMMSG+EDRENI+RAR GK LT+PFR
Sbjct: 160 IKEMYSKDLQQDFDEYAPTTMSQKSLSYLTSLDMMSGQEDRENIIRARELGKGALTKPFR 219
Query: 215 LLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAI 274
LL S HLGVV TF VY + L + E+RIKATAGY+GG FDVE+LVENLL Q+AG+Q I
Sbjct: 220 LLESKHLGVVFTFAVYCTDLHDDAKKEDRIKATAGYLGGAFDVETLVENLLRQMAGSQII 279
Query: 275 LVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTAL 334
VNVYD+TN + PL+MYG N + + + S LDFGD R+H+M CR+ + A PWTA+
Sbjct: 280 AVNVYDITNETMPLVMYGHTNVEKSKNT-YVSSLDFGDPARRHEMRCRFKEDALPPWTAI 338
Query: 335 TTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIR 394
+T+ +FVI LVG++L+ + I KVE++ QELK+RA+ A +AKSQFLATVSHEIR
Sbjct: 339 STSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHEIR 398
Query: 395 TPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVL 454
TPMNG+LGML +L +T L+ Q DYA+TA GKALI LINEVLD+AKIE+ ++ELE V
Sbjct: 399 TPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKALINLINEVLDQAKIESGRVELEHVP 458
Query: 455 FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE 514
F+LRAILDDVLSLF +SR+ GIELAV+VS KVP+ ++GDPGRFRQIITNLVGNS+KFTE
Sbjct: 459 FDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKILVGDPGRFRQIITNLVGNSIKFTE 518
Query: 515 RGHIFVKVHLAE---RTMVKTDAKDETLLNGGTEE-GVCRSGTGQFNTLSGLEAADGRNS 570
GHIFV VHL E M + + + L+G E G +FNTLSG E AD RNS
Sbjct: 519 AGHIFVCVHLNEDVNNLMDGDEGEADDTLDGEVESAGPLTDMNYRFNTLSGRETADYRNS 578
Query: 571 WDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMVCVEDTGIGIPLSAQERVFMPFM 628
W+ F+ L+ E +S+ S ++ N + V L++ VEDTG+GIPL Q+RVFMPFM
Sbjct: 579 WEMFERLLAQE--KSHRSGVDQDTRNYCDLNGAVNLVISVEDTGVGIPLHVQDRVFMPFM 636
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
QADSSTSR+YGGTGIGLSIS+ LV+LM G++ FVS P+VGSTF+FTA + V E I
Sbjct: 637 QADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPKVGSTFTFTAELQRVPANVPEHI 696
Query: 689 KQS------KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDA-SST 741
+ ++ L F+G++ +VVD + VR VT++HL RLG+ V S S S
Sbjct: 697 LREGRNCYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLQRLGLRVLPSVSCSSIFFSI 756
Query: 742 AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
K L E ++I V+KD W G F + L + + +L T++++
Sbjct: 757 FKELLIYCEVISDIELIFVDKDAWGPGTWVNFRSLLTE----SFIGQLSH--NQTTSMNE 810
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLST-ENKRQAGRGVPNGSSFHQGLLRGK 860
E KA GF DTV+ KPLRAS++AA L+++L + R G+ + G + Q LL GK
Sbjct: 811 MELSVVKASGFVDTVVRKPLRASLVAASLEEILGVGDGGRDQGQNLQGGINSLQNLLTGK 870
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILVVDDN VNR VAAGAL K+GA V+C S +AA+ L+ PH +DACFMD+QMPEMDGF
Sbjct: 871 RILVVDDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGF 930
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATR IR+ E+ A + G S G LH+PILAMTADVI AT +EC++CGMDGY
Sbjct: 931 EATRLIRKAEAAAVDNWQAGRFSSFGR----RLHVPILAMTADVIQATSEECMRCGMDGY 986
Query: 981 VSKPFEEENLYRELAKFF 998
V+KPF+E +LY+ +AK F
Sbjct: 987 VAKPFDEHHLYQAVAKHF 1004
>gi|449444494|ref|XP_004140009.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/988 (51%), Positives = 652/988 (65%), Gaps = 52/988 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W L ++I+ S+ ++R +++ +RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 281 WRKVLLRIFIVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHA 340
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L +L STFH+ K PSA+DQ TF EYT RTAFERPL SGVAYA +V ++RE FE HG T
Sbjct: 341 LAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWT 400
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PIRDEYAPV+F QE ++H+ S+DMMSG+EDRENILRA
Sbjct: 401 IKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRA 460
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LP +T E+RI+AT GY+G +D+ SLV
Sbjct: 461 RASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLV 520
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I+VNVYD TN S P+ MYG D LLH S+LDFGD R+H+M C
Sbjct: 521 EKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTD--TGLLHISKLDFGDPLRRHEMHC 578
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PWTA+ ++ + +I LLVG+I + A I KVE+D+HKM +LK AEAADVA
Sbjct: 579 RFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVA 638
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML LL+DT+L S Q D+AQTA GK LI+LIN+VLD+A
Sbjct: 639 KSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQA 698
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ LELE+V F+LR I+D V+S FS KS KGIELAV+VSD VPE V+GD GRFRQI
Sbjct: 699 KIESGSLELESVPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQI 758
Query: 502 ITNLVGNSVKFTE-RGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
IT+LVGNS+KFT +GHI V VHLA+ D D L G G + T S
Sbjct: 759 ITHLVGNSLKFTHNKGHILVSVHLADEVRATVDFMDIVLKQGSYIVG--DTSNNSCTTFS 816
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
GL D SW+ FK + + S+ + ++V VEDTG+GIP +AQ
Sbjct: 817 GLPVVDRWKSWEDFKKFGRTDVVEE-------------SKMIRILVTVEDTGVGIPQNAQ 863
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSISK LV+LM G+I FVS P +GSTFSFT F K
Sbjct: 864 SRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKG 923
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
+ + D +Q + + F+GL+A+++D +RA VT+YHL RLGI V ++ S + A
Sbjct: 924 ETSIL-DTRQPQYDVGVREFQGLRALIIDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQ 982
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL--------LDWKPNGHVFKLPKL 792
N + + Q +IL+++D W F+ D + NG PKL
Sbjct: 983 YLSNT-SHTRASTQLAMILIDRDIWDKKMGLKFHHLFKEHVDRSGTDVQMNG-----PKL 1036
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
+LAT S +E ++ K+ G + V+ KPL+ + +C ++ E + Q P S
Sbjct: 1037 FVLATPKSSNEHNELKSSGHVNNVLSKPLQLDALVSCFREAFGIEKRNQVIIKKP---ST 1093
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
+ LL+ K ILVVDDN VN VA GALKK+GA V C K A+ L PH FDACFMD+
Sbjct: 1094 LRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDL 1153
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMPEMDG+EATR++R +E N ++ +G S++ + H PI AMTAD+I +EC
Sbjct: 1154 QMPEMDGYEATRQVRAVECGVNAKITSGEVSIENN--KIHWHTPIFAMTADLIQDMNEEC 1211
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKS 1000
LKCGMDGYV+KPFEEE LY +A+FF++
Sbjct: 1212 LKCGMDGYVAKPFEEEQLYSAVARFFET 1239
>gi|449505124|ref|XP_004162383.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/988 (51%), Positives = 652/988 (65%), Gaps = 52/988 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W L ++I+ S+ ++R +++ +RR+E L +MCD+RARMLQDQFNV++NHVHA
Sbjct: 281 WRKVLLRIFIVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHA 340
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L +L STFH+ K PSA+DQ TF EYT RTAFERPL SGVAYA +V ++RE FE HG T
Sbjct: 341 LAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWT 400
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M++E P+PIRDEYAPV+F QE ++H+ S+DMMSG+EDRENILRA
Sbjct: 401 IKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRA 460
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY + LP +T E+RI+AT GY+G +D+ SLV
Sbjct: 461 RASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLV 520
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I+VNVYD TN S P+ MYG D LLH S+LDFGD R+H+M C
Sbjct: 521 EKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTD--TGLLHISKLDFGDPLRRHEMHC 578
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ K PWTA+ ++ + +I LLVG+I + A I KVE+D+HKM +LK AEAADVA
Sbjct: 579 RFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVA 638
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLATVSHEIRTPMNG+LGML LL+DT+L S Q D+AQTA GK LI+LIN+VLD+A
Sbjct: 639 KSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQA 698
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ LELE+V F+LR I+D V+S FS KS KGIELAV+VSD VPE V+GD GRFRQI
Sbjct: 699 KIESGSLELESVPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQI 758
Query: 502 ITNLVGNSVKFTE-RGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
IT+LVGNS+KFT +GHI V VHLA+ D D L G G + T S
Sbjct: 759 ITHLVGNSLKFTHNKGHILVSVHLADEVRGTVDFMDIVLKQGSYIVG--DTSNNSCTTFS 816
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
GL D SW+ FK + + S+ + ++V VEDTG+GIP +AQ
Sbjct: 817 GLPVVDRWKSWEDFKKFGRTDVVEE-------------SKMIRILVTVEDTGVGIPQNAQ 863
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F PFMQADSSTSR YGGTGIGLSISK LV+LM G+I FVS P +GSTFSFT F K
Sbjct: 864 SRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKG 923
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
+ + D +Q + + F+GL+A+++D +RA VT+YHL RLGI V ++ S + A
Sbjct: 924 ETSIL-DTRQPQYDVGVREFQGLRALIIDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQ 982
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL--------LDWKPNGHVFKLPKL 792
N + + Q +IL+++D W F+ D + NG PKL
Sbjct: 983 YLSN-TSHTRASTQLAMILIDRDIWDKKMGLKFHHLFKEHVDRSGTDVQMNG-----PKL 1036
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
+LAT S +E ++ K+ G + V+ KPL+ + +C ++ E + Q P S
Sbjct: 1037 FVLATPKSSNEHNELKSSGHVNNVLSKPLQLDALVSCFREAFGIEKRNQVIIKKP---ST 1093
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
+ LL+ K ILVVDDN VN VA GALKK+GA V C K A+ L PH FDACFMD+
Sbjct: 1094 LRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDL 1153
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMPEMDG+EATR++R +E N ++ +G S++ + H PI AMTAD+I +EC
Sbjct: 1154 QMPEMDGYEATRQVRAVECGVNAKITSGEVSIENN--KIHWHTPIFAMTADLIQDMNEEC 1211
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKS 1000
LKCGMDGYV+KPFEEE LY +A+FF++
Sbjct: 1212 LKCGMDGYVAKPFEEEQLYSAVARFFET 1239
>gi|326487932|dbj|BAJ89805.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1019
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/972 (51%), Positives = 650/972 (66%), Gaps = 54/972 (5%)
Query: 42 VLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVS 101
+LW++G I + ++R + +R++ L SMCD+RARMLQDQFNV++NH+ AL ILV+
Sbjct: 84 MLWVVGWTLICLQVFRYSNSGAVEKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVN 143
Query: 102 TFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKS 161
TFH+ + PSA+ Q TFA Y RTAFERPL SGVAYA RV A+R+QFERQ G +I M S
Sbjct: 144 TFHHSQTPSAITQATFARYAERTAFERPLTSGVAYAVRVTHAERDQFERQQGWSIKKMYS 203
Query: 162 EPSP----------IR---DEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAV 208
PS IR DEYAPV+F Q+ +V S DM+SG +DRENI+RAR +GK V
Sbjct: 204 SPSSQGPGDAAVAEIRGPADEYAPVIFAQDAYKNVISFDMLSGADDRENIIRARESGKGV 263
Query: 209 LTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQL 268
LT PF+LL LGV+LT+ VYKS+ P + +ERI+A GY+GG FD+E+LV+ LL QL
Sbjct: 264 LTAPFQLLNGR-LGVILTYSVYKSEPPANARPQERIQAAVGYLGGIFDIEALVDKLLHQL 322
Query: 269 AGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKAS 328
AG Q+I+VNVYD T P+ MYG + G M H S L+ GD R+H+M CR+ QK
Sbjct: 323 AGKQSIMVNVYDTTTKEKPISMYGSNDTGGGM--YHNSTLNSGDPSRRHEMHCRFMQKPP 380
Query: 329 TPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLAT 388
PW A+T++ ++VI LL+GYI+Y I KVEDD M++LK RAEAADVAKSQFLAT
Sbjct: 381 LPWLAITSSLGIYVIFLLIGYIIYATVHRIAKVEDDLQIMKDLKKRAEAADVAKSQFLAT 440
Query: 389 VSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448
VSHEIRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KL
Sbjct: 441 VSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKL 500
Query: 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGN 508
EL+AV ++R + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDP R RQIITNL+GN
Sbjct: 501 ELDAVPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIGDPNRMRQIITNLMGN 560
Query: 509 SVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGR 568
S+KFTERGHI++ VH+ E M D + E +NTLSG E A R
Sbjct: 561 SIKFTERGHIYLTVHVVEEVMCSLDVETEI--------------QNTYNTLSGCEVAKRR 606
Query: 569 NSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
SW F+ L + + S +M E + L++ VEDTG+GIPL AQ R+F PFM
Sbjct: 607 LSWQSFR-LFNMDLHSSELPFAPIMP-----ETIRLIISVEDTGVGIPLEAQSRIFTPFM 660
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
Q S +R +GGTGIGLSISKCLV LM+G+I FVS+ VGSTFSFTAV + + ++
Sbjct: 661 QVGPSIARTHGGTGIGLSISKCLVHLMKGEIGFVSKHHVGSTFSFTAVLSRARPNA--NV 718
Query: 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTS 748
+S PGFKG+ A+VVD +PVRA VT+YHL RLG+ ++++ + K S
Sbjct: 719 NKS------PGFKGVSALVVDHRPVRANVTKYHLQRLGVKTELTNDVSQV--IPKMNCAS 770
Query: 749 SEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAK 808
+ ++LV+K+ W+ ++S QLL + PK+ LL + +
Sbjct: 771 LVTR----LVLVDKETWL--KESHSMPQLLSKLRSKDQSDPPKVFLLENPTNSIKSSSNI 824
Query: 809 AGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDN 868
+ VIMKPLRASM+ A L++VL +K G+ G+S LL +KI+VVDDN
Sbjct: 825 SREHNLNVIMKPLRASMLEASLRRVLGGVDKAHVKNGLV-GNSALGSLLHKRKIIVVDDN 883
Query: 869 GVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ 928
VN VAAGALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEAT+RIR
Sbjct: 884 AVNLKVAAGALKKYGAEVICADSGKKAIALLKPPHSFDACFMDIQMPEMDGFEATKRIRM 943
Query: 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE 988
ME + NE++ G + + R PILAMTADVI AT++ CLKC MDGYVSKPFE E
Sbjct: 944 MERELNERVERGEAPPECANVR-RWRTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGE 1002
Query: 989 NLYRELAKFFKS 1000
LYRE+ +FF++
Sbjct: 1003 QLYREVTRFFQN 1014
>gi|302810422|ref|XP_002986902.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
gi|300145307|gb|EFJ11984.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
Length = 905
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/951 (54%), Positives = 649/951 (68%), Gaps = 67/951 (7%)
Query: 59 MDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFA 118
M+ N R +E+L +MCD+RA MLQDQF ++NHV AL L+ TFH K PS LDQ+TFA
Sbjct: 1 MNAGNIRRHRELLDNMCDERAWMLQDQFTASMNHVKALAALLRTFHLGKQPSVLDQETFA 60
Query: 119 EYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM--KSEPSPIRDEYAPVMFY 176
YT RT FERPL++GVAYA R+ ++RE FER++G I TM K SP + EYAP +F
Sbjct: 61 VYTKRTEFERPLMTGVAYAQRLFHSEREAFERRYGWEIKTMTTKKVQSP-QAEYAPAVFT 119
Query: 177 QEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPP 236
Q +S+++SLDM+SG+ + +NILRAR++GK VLT P RLL S+HLG+V+TF VYK LP
Sbjct: 120 QNSLSYLESLDMLSGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTVYKEDLPE 179
Query: 237 RSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYG-DQN 295
++ EERI A+AGY+GG FD E LV NLL QLAG+Q+I+VNVYD+TN S PL+MYG D
Sbjct: 180 DASEEERIAASAGYVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLLMYGPDAY 239
Query: 296 QDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAA 355
+G +H +ELDF D RKH++ CR+H W+A+TT+ + VI LVG+IL+ A
Sbjct: 240 LEG--RDVHVTELDFRDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHILHAAI 297
Query: 356 IHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
I KVE+D+ +M++LKV AE+AD+AKSQFLATVSHEIRTPMNG+LGML +L+DTDL T
Sbjct: 298 NRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDPT 357
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
QRDYA TA GK LI LINEVLD+AKIE+ ++ELE V F+LR ILDD+L LFS + ++K
Sbjct: 358 QRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSAEIKDK 417
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
GIELAVFVS+KVP+ ++GDP R QIITNLVGNSVKFTERGHIFV VH+ + + T +K
Sbjct: 418 GIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKFTERGHIFVCVHMEDE--LTTVSK 475
Query: 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS 595
+E G NTLSG++AAD R SWD FK L+ G + +
Sbjct: 476 EE--------------GFDSCNTLSGMKAADPRLSWDSFKSLVG--GLEDR--------N 511
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
G DV ++ VEDTG+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM
Sbjct: 512 CGELTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELM 571
Query: 656 RGQISFVSRPQVGSTFSFTAVF--GKCK----EYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
+G + FVS+P +G+TF F+ VF G+ K Y K S+ L P K ++A+VVD
Sbjct: 572 QGSMDFVSQPGIGATFRFSVVFKRGEMKMPEARYPHISPKHSQMARLTPCLKNMRALVVD 631
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+PVR+ +T+YHL RLG+ V++ + I A S N + D++LV+KD W G
Sbjct: 632 GRPVRSQITRYHLQRLGMQVEVVNDIPAALSGGANSRSL-------DMVLVDKDSWGPGS 684
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
+L D G FK K ILLA + +E K GF T KP+RAS A
Sbjct: 685 GLVVPQKLKD---AGGRFKNAKFILLAGSAIDNEPLKTAPSGFIATH-HKPVRASSFATF 740
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
L++V +KR GR + GS H LL GK+ILVVDDN VNR VAAGAL K+GA VEC
Sbjct: 741 LEKVFGFGSKRLNGREISQGSRLHS-LLSGKQILVVDDNKVNRRVAAGALTKYGARVECV 799
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
S KAA+ +LQ H FDACFMD+QMPEMDGFEATR+IR+ E
Sbjct: 800 ESGKAAIARLQPSHEFDACFMDVQMPEMDGFEATRKIREAEGHDC--------------- 844
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ LPILAMTAD+I AT DEC KCGMDGYVSKPFEEE LY+ +AK+F+S
Sbjct: 845 --KCRLPILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLYKAVAKYFES 893
>gi|9802528|gb|AAF99730.1|AC004557_9 F17L21.11 [Arabidopsis thaliana]
Length = 1092
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/1006 (51%), Positives = 662/1006 (65%), Gaps = 94/1006 (9%)
Query: 27 YTFIQS---NRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQ 83
Y F+ S N+AW K +V+W++ +S+ + + +RKE L SMCD+RARMLQ
Sbjct: 79 YQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWTFWYFSSQAMEKRKETLASMCDERARMLQ 138
Query: 84 DQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDA 143
DQFNV++NHV A++IL+STFH+ K PSA+DQ TF+EYT RT+FERPL SGVAYA RV+ +
Sbjct: 139 DQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGVAYAMRVLHS 198
Query: 144 QREQFERQHGMTITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLD 187
+RE+FERQ G TI M S EPSP+++EYAPV+F Q+ +SHV SLD
Sbjct: 199 EREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVSHVVSLD 258
Query: 188 MMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKAT 247
M+SG+EDREN+LRAR++GK VLT PF L+ ++ LGV+LTF VYK LP +T +ERI+AT
Sbjct: 259 MLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPKERIEAT 318
Query: 248 AGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYG-DQNQDGDMSLLHES 306
GY+GG FD+ESLVENLL QLA Q ILVNVYD+TN S P+ MYG + + DG L S
Sbjct: 319 NGYLGGVFDIESLVENLLQQLASKQTILVNVYDITNHSQPISMYGTNVSADG---LERVS 375
Query: 307 ELDFGDSFRKHKMICRYHQKAST------------------------------PWTALT- 335
L FGD RKH+M CRY Q A T PW L+
Sbjct: 376 PLIFGDPLRKHEMRCRYLQLAHTYVCNFFLFARIQVLTFCCELLPLCRFKQKPPWPVLSM 435
Query: 336 -TAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIR 394
T+F + VI LLV +I++ I KVE+D KM++LK +AEAADVAKSQFLATVSHEIR
Sbjct: 436 VTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIR 495
Query: 395 TPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVL 454
TPMNG+LGML +L+DT+L TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE V
Sbjct: 496 TPMNGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVR 555
Query: 455 FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE 514
F+LR ILDDVLSLFS KS+ KG+ELAV++SD+VP+ ++GDPGRFRQI+TNL+GNS+KFTE
Sbjct: 556 FDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTE 615
Query: 515 RGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKF 574
+GHIFV VHL + D + + + +TLSGL AD + SW+ F
Sbjct: 616 KGHIFVTVHLVDELFESIDGE---------------TASSPESTLSGLPVADRQRSWENF 660
Query: 575 KHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSST 634
K F SN + D+ L+V VEDTG+GIP+ AQ R+F PFMQ S
Sbjct: 661 K------AFSSNGH----RSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSI 710
Query: 635 SRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE 694
SR +GGTGIGLSISKCLV LM+G+I F S P+VGSTF+FTAVF + + K ++
Sbjct: 711 SRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPA--ERKNDNNQ 768
Query: 695 DLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQ 754
+ F+G+KAVVVD +P RA V+ YH RLGI V++ ++ A K G T+
Sbjct: 769 PIFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTTV----- 823
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
++IL+E++ W + E F +L +F PKLILLA ++ + G
Sbjct: 824 -NMILIEQEIW-NREADDFIKKL----QKDPLFLSPKLILLANSVESSISEALCTGIDPP 877
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
VI+KPLRASM+AA LQ+ L + P + LL G+KIL+VDDN VN V
Sbjct: 878 IVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALIL-RNLLLGRKILIVDDNNVNLRV 936
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AAGALKK+GA V CA S A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME + N
Sbjct: 937 AAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMN 996
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+++ NG + + + HLP+LAMTADVI AT +ECLKCGMDGY
Sbjct: 997 KRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGY 1042
>gi|413951477|gb|AFW84126.1| putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/988 (50%), Positives = 654/988 (66%), Gaps = 62/988 (6%)
Query: 30 IQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
++ + +WL + LW++ ++ I M + +R+E L SMCD+RARMLQDQFNV+
Sbjct: 62 VRDSSSWL---IPLWVLFWVLLASVICLWMSNQAVAKRRESLASMCDERARMLQDQFNVS 118
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
VNH+ AL ILVSTFH+ K PSA+DQ TFA Y RTAFERPL SGVAY RV A+REQFE
Sbjct: 119 VNHLQALAILVSTFHHSKTPSAIDQTTFARYAERTAFERPLTSGVAYGVRVTHAEREQFE 178
Query: 150 RQHGMTITTMKS-------------EPSPIRD---EYAPVMFYQEPMSHVKSLDMMSGEE 193
RQ G +I M S E + +R+ EYAPV+F Q+ HV S D++SG +
Sbjct: 179 RQQGWSIKKMYSSKTKKQSQGPGNAEDAEVREPAEEYAPVIFAQDAYKHVISFDLLSGAD 238
Query: 194 DRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGG 253
DR+N+LRAR +GK VLT PF+LL ++ LGV+ T+ VYK +LPP + +ERI+A GY+GG
Sbjct: 239 DRDNVLRARESGKGVLTAPFKLL-NNRLGVISTYAVYKYELPPNARPQERIQAAIGYLGG 297
Query: 254 PFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDS 313
FD+E+LV+ LL QLAG Q+I+VNVYD TN + MYG + M + S L+FGD
Sbjct: 298 IFDIEALVDKLLHQLAGKQSIMVNVYDTTNDRR-ISMYGSNDTGSGMCQV--STLNFGDP 354
Query: 314 FRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV 373
RKH+M CR+ Q PW A+TT+ VI LL+GYI+Y A I +VEDDF +M LK
Sbjct: 355 SRKHEMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIIYATAKRIARVEDDFQEMSVLKK 414
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
RAE AD+AKSQFLATVSHEIRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++L
Sbjct: 415 RAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSL 474
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
INEVLD+AKIE+ KLELEAV F+LR + DD+LSLF K++ KG+ELAVFVSD+VP+ ++G
Sbjct: 475 INEVLDQAKIESGKLELEAVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQALIG 534
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DPGR RQIITNLVGNS+KFTE+GHI++ VH+ E M + + +GT
Sbjct: 535 DPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMNCLEVE---------------TGT 579
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
NTLSG A+ + SW+ F+ F + M + S+ ++L++ VEDTG+
Sbjct: 580 QSANTLSGYPVANRKRSWENFR------VFSRELNSSEMPFAPIASDSISLIISVEDTGV 633
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
GIP AQ RVF PFMQ S +R +GGTGIGLSISKCLV LMRG+I F S+PQVGSTF+F
Sbjct: 634 GIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTFTF 693
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
TAV + S++E+ FKG+ A+VVD +PVRA VT+YHL RLG+ ++++
Sbjct: 694 TAVLTRAHS--------SRNENKSSEFKGINALVVDHRPVRAKVTRYHLQRLGVQTELTT 745
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+ S G ++ ++L++K+ W+ ++S L+ N KL
Sbjct: 746 DLDQYISKINCGSQIAK------LVLIDKETWL--KESHSMPLLVTKLRNKDQPDSTKLF 797
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
LL S + + F VIMKPLRASM+ L + L +K GV G+S
Sbjct: 798 LLENPKSTAKSNSHIFREFNLNVIMKPLRASMLQVSLHRALGGIDKLHCRNGVL-GNSTL 856
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
LL K+ILVVDDN VN VAAGALKK+GA V CA S K A+ +L+ PH FDACFMDIQ
Sbjct: 857 GSLLHKKRILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHSFDACFMDIQ 916
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDGFEAT+RIR ME NEQ+ G + + R + PILAMTADVI AT ++CL
Sbjct: 917 MPEMDGFEATKRIRVMERDLNEQIERGEAPPECAGLR-QWRTPILAMTADVIQATHEQCL 975
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSK 1001
K MDGYVSKPFE E LYRE+A+FF+++
Sbjct: 976 KSEMDGYVSKPFEGEQLYREVARFFQNQ 1003
>gi|302121695|gb|ADK92861.1| histidine kinase 1 [Hypericum perforatum]
Length = 1199
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/991 (50%), Positives = 653/991 (65%), Gaps = 65/991 (6%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L+++++ F S+ ++ + ++R + L SMC +RARMLQDQFNV++NHVHA
Sbjct: 247 WRKKILLIFVLLGIFASIWLFWHLSGSIALKRVDTLASMCGERARMLQDQFNVSMNHVHA 306
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L ILVSTFH+ KNPSA+DQ TF EYT RTAFERPL SGVAYA +V+ ++REQFE+Q G T
Sbjct: 307 LAILVSTFHHGKNPSAIDQITFGEYTERTAFERPLTSGVAYAVKVLHSEREQFEKQQGWT 366
Query: 156 ITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRA 201
I M+SE P+P++DEYAPV+ QE +SH+ S+DMMSG++DRENILRA
Sbjct: 367 IKKMESEDQTLVQDCSPENLDPAPLQDEYAPVILTQETVSHIVSIDMMSGKDDRENILRA 426
Query: 202 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLV 261
RA+GK VLT PF+LL S+HLGVVLTF VY ++LP +T E++I+A GY+G +DV SLV
Sbjct: 427 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNTELPLDATPEQKIEACVGYLGASYDVPSLV 486
Query: 262 ENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMIC 321
E LL QLA Q I+VNVYD TNAS+ ++MYG D D L+H S LDFGD R+H+M C
Sbjct: 487 EKLLQQLASKQTIVVNVYDTTNASNAILMYGSDVIDTD--LVHVSNLDFGDPSRRHEMRC 544
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
+ QKAS PWTA+ + +F+I +LVGYI + A IV+VE + H+M +L VRAEAADVA
Sbjct: 545 WFKQKASLPWTAINASAAVFIITVLVGYIFHAAIKRIVEVEAECHEMLKLTVRAEAADVA 604
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLATVSHEIRTPMNG+LGML +L+DT+L ++Q DYA+TA G+ LI+LI +VLD+A
Sbjct: 605 KSKFLATVSHEIRTPMNGVLGMLQMLMDTELDTSQEDYAKTAHASGRELISLIGDVLDQA 664
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE-LAVFVSDKVPEFVLGDPGRFRQ 500
KIE+ +LELEAV F+L ++LD VLS+FS +S KGIE LAV+ S+ V E V+GDP RFRQ
Sbjct: 665 KIESGRLELEAVPFDLHSVLDSVLSMFSGRSSEKGIEKLAVYASNCVSEIVIGDPERFRQ 724
Query: 501 IITNLVGNSVKFTER--GHIFVKVHLAERTMVKTDAKDETLLNGGT------EEGVCRSG 552
II NLVGNS+KFT GHIFV VHL E + D KD L+NG VC
Sbjct: 725 IIQNLVGNSIKFTRDNGGHIFVTVHLVEEVTGQLDTKDAVLVNGSVPVDRDPSNSVCE-- 782
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
TLSG + SW+ FK N + S S+ V ++V VEDTG
Sbjct: 783 -----TLSGYPVVNRWKSWENFKK--------------NNINSMKESDVVRVLVTVEDTG 823
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+GI AQ R+F PF+Q DSSTSR YGGTGIGLSISKCLVELM G+I FVS +GSTFS
Sbjct: 824 VGISPDAQSRIFTPFVQGDSSTSRTYGGTGIGLSISKCLVELMDGEIGFVSEANIGSTFS 883
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPG---FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
FT + + +KS P F+G ++++VD + +RA VT+YHL RLG+
Sbjct: 884 FTVSLKRGESRTL----GTKSPLRDPSLLEFQGQRSLIVDNRRIRAEVTKYHLRRLGVHA 939
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
+ +K A + + ++L++ + W S F + + KPNG ++
Sbjct: 940 DIVPDLKSACTYRYPANLA--------LVLIDTEVWDKEAGSAFRSVINASKPNGGA-EI 990
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
PK+ LLA +E + K+ D +++KPLR+S++AA Q+ + + K Q + P+
Sbjct: 991 PKVFLLANFTGSEERVELKSARLVDDIVIKPLRSSVLAAAFQETVGSGRKNQVHKKTPSA 1050
Query: 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909
L+RGK+ILVVDDN VNR VA GALKK+GA V CA + A+ L+ PH FDACF
Sbjct: 1051 LG---NLVRGKQILVVDDNMVNRRVAEGALKKYGAIVTCANNGSEAVKMLEPPHRFDACF 1107
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MD MPEMDG EAT+RIR ME N ++ +G + H PILAMTADVI
Sbjct: 1108 MDRHMPEMDGLEATQRIRSMEELVNGRIASGEVPMVMFGNVAYWHTPILAMTADVIQGAN 1167
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ECL+CGMD +VSKPFEE LY LA+FF+S
Sbjct: 1168 EECLRCGMDDFVSKPFEEAQLYNALARFFES 1198
>gi|302792032|ref|XP_002977782.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
gi|300154485|gb|EFJ21120.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
Length = 905
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/951 (54%), Positives = 649/951 (68%), Gaps = 67/951 (7%)
Query: 59 MDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFA 118
M+ N R +E+L +MCD+RA MLQDQF ++NHV AL L+ TFH K PS LDQ+TFA
Sbjct: 1 MNAGNIRRHRELLDNMCDERAWMLQDQFTASMNHVKALAALLRTFHLGKQPSVLDQETFA 60
Query: 119 EYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM--KSEPSPIRDEYAPVMFY 176
YT RT FERPL++GVAYA R+ ++RE FER++G I TM K SP + EYAP +F
Sbjct: 61 VYTKRTEFERPLMTGVAYAQRLFHSEREAFERRYGWEIKTMTTKKVQSP-QAEYAPAVFT 119
Query: 177 QEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPP 236
Q +S+++SLDM+SG+ + +NILRAR++GK VLT P RLL S+HLG+V+TF VYK LP
Sbjct: 120 QNSLSYLESLDMLSGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTVYKEDLPE 179
Query: 237 RSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYG-DQN 295
++ EERI A+AGY+GG FD E LV NLL QLAG+Q+I+VNVYD+TN S PL+MYG D
Sbjct: 180 DASEEERIAASAGYVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLLMYGPDAY 239
Query: 296 QDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAA 355
+G +H +ELDF D RKH++ CR+H W+A+TT+ + VI LVG+IL+ A
Sbjct: 240 LEG--RDVHVTELDFRDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHILHAAI 297
Query: 356 IHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
I KVE+D+ +M++LKV AE+AD+AKSQFLATVSHEIRTPMNG+LGML +L+DTDL T
Sbjct: 298 NRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDPT 357
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
QRDYA TA GK LI LINEVLD+AKIE+ ++ELE V F+LR ILDD+L LFS + ++K
Sbjct: 358 QRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSAEIKDK 417
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
GIELAVFVS+KVP+ ++GDP R QIITNLVGNSVKFTE+GHIFV VH+ + + T +K
Sbjct: 418 GIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKFTEQGHIFVCVHMEDE--LTTVSK 475
Query: 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS 595
+E G NTLSG++AAD R SWD FK L+ G + +
Sbjct: 476 EE--------------GFDSCNTLSGVKAADLRLSWDSFKSLVG--GLEDR--------N 511
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
G DV ++ VEDTG+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCLVELM
Sbjct: 512 CGELTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELM 571
Query: 656 RGQISFVSRPQVGSTFSFTAVF--GKCK----EYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
+G + FVS+P +G+TF F+ VF G+ K Y K S+ L P K ++A+VVD
Sbjct: 572 QGSMDFVSQPGIGATFRFSVVFKRGEMKMPEARYPHISPKHSQMARLTPCLKNMRALVVD 631
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+PVR+ +T+YHL RLG+ V++ + I A S N + D++LV+KD W G
Sbjct: 632 GRPVRSQITRYHLQRLGMQVEVVNDIPSALSGGANSRSL-------DMVLVDKDSWGPGS 684
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
+L D G FK K ILLA + +E K GF T KP+RAS A
Sbjct: 685 GLVVPQKLKD---AGGRFKNAKFILLAGSAIDNEPLKTAPSGFIAT-HHKPVRASSFATF 740
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
L++V +KR GR + GS H LL GK+ILVVDDN VNR VAAGAL K+GA VEC
Sbjct: 741 LEKVFGFGSKRLNGREISQGSRLHS-LLSGKQILVVDDNKVNRRVAAGALTKYGARVECV 799
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
S KAA+ +LQ H FDACFMD+QMPEMDGFEATR+IR+ E
Sbjct: 800 ESGKAAIARLQPSHEFDACFMDVQMPEMDGFEATRKIREAEGHDC--------------- 844
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ LPILAMTAD+I AT DEC KCGMDGYVSKPFEEE LY+ +AK+F+S
Sbjct: 845 --KCRLPILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLYKAVAKYFES 893
>gi|125528916|gb|EAY77030.1| hypothetical protein OsI_04985 [Oryza sativa Indica Group]
Length = 1023
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/970 (52%), Positives = 647/970 (66%), Gaps = 67/970 (6%)
Query: 52 SMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSA 111
S ++ M+ ++ +R++ L SMCD+RARMLQDQFNV++NH+ AL ILVSTFH+ K PSA
Sbjct: 95 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 154
Query: 112 LDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-------KSEPS 164
+DQ TFA Y RTAFERPL SGVAYA RV +REQFERQ G I M +S P
Sbjct: 155 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPG 214
Query: 165 P---------IRD---EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRP 212
P IR+ EYAPV+F Q+ HV S DM+SG EDR+NILRAR +GK VLT P
Sbjct: 215 PGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 274
Query: 213 FRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQ 272
F+LL ++ LGV+LT+ VYK +LP + ERI+A GY+GG FD+++LVE LL QLA +
Sbjct: 275 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 333
Query: 273 AILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWT 332
+I+VNVYD TN S P+ MYGD G + H S L+FGD RKH+M CR+ +K PW
Sbjct: 334 SIMVNVYDTTNES-PISMYGDDTGSG---MCHVSVLNFGDPSRKHEMHCRFEKKPPWPWL 389
Query: 333 ALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHE 392
A+T++F VI LL G+I I KVEDDFHKM ELK RAE ADVAKSQFLATVSHE
Sbjct: 390 AITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHE 449
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE
Sbjct: 450 IRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELET 509
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
V F+LR + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNLVGNS+KF
Sbjct: 510 VPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKF 569
Query: 513 TERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWD 572
TERGHI++ VH+ E M + + +G NTLSG A+ R SW+
Sbjct: 570 TERGHIYLTVHVVEEVMSCLEVE---------------TGIQNTNTLSGYPVANRRRSWE 614
Query: 573 KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632
+ L + E S S + S+ ++L++ VEDTG+GIP AQ RVF PFMQ
Sbjct: 615 SIR-LFNRELHSSEKSFAPI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGP 668
Query: 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQ 690
S +R +GGTGIGLSISKCLV LM+G+I F S+P VGSTF+FTAV CK DIK
Sbjct: 669 SIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKG---NDIKS 725
Query: 691 SKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE 750
S+ FKG+ A+VVD +PVRA VT+YHL RLG+ ++++ + S +G +++
Sbjct: 726 SE-------FKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK 778
Query: 751 DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG 810
++L++K+ W+ ++S L++ N PKL LL ++ S + +
Sbjct: 779 ------LVLIDKETWL--KESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSR 830
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
VIMKPLRASM+ L++ L +K GV G+S LL K+I+VVDDN V
Sbjct: 831 EHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIV 889
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N VAAGALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME
Sbjct: 890 NLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVME 949
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
NE++ G + + A PILAMTADVI AT +ECLK MDGYVSKPFE E L
Sbjct: 950 RDLNERIERGEAPPE-CASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQL 1008
Query: 991 YRELAKFFKS 1000
Y E+A+FF++
Sbjct: 1009 YSEVARFFQN 1018
>gi|118790678|tpd|FAA00248.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1023
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/970 (52%), Positives = 647/970 (66%), Gaps = 67/970 (6%)
Query: 52 SMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSA 111
S ++ M+ ++ +R++ L SMCD+RARMLQDQFNV++NH+ AL ILVSTFH+ K PSA
Sbjct: 95 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 154
Query: 112 LDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-------KSEPS 164
+DQ TFA Y RTAFERPL SGVAYA RV +REQFERQ G I M +S P
Sbjct: 155 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPG 214
Query: 165 P---------IRD---EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRP 212
P IR+ EYAPV+F Q+ HV S DM+SG EDR+NILRAR +GK VLT P
Sbjct: 215 PGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 274
Query: 213 FRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQ 272
F+LL ++ LGV+LT+ VYK +LP + ERI+A GY+GG FD+++LVE LL QLA +
Sbjct: 275 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 333
Query: 273 AILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWT 332
+I+VNVYD TN S P+ MYGD G + H S L+FGD RKH+M CR+ +K PW
Sbjct: 334 SIMVNVYDTTNES-PISMYGDDTGSG---MCHVSVLNFGDPSRKHEMHCRFEKKPPWPWL 389
Query: 333 ALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHE 392
A+T++F VI LL G+I I KVEDDFHKM ELK RAE ADVAKSQFLATVSHE
Sbjct: 390 AITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHE 449
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE
Sbjct: 450 IRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELET 509
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
V F+LR + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNLVGNS+KF
Sbjct: 510 VPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKF 569
Query: 513 TERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWD 572
TERGHI++ VH+ E M + + +G NTLSG A+ R SW+
Sbjct: 570 TERGHIYLTVHVVEEVMSCLEVE---------------TGIQNTNTLSGYPVANRRCSWE 614
Query: 573 KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632
+ L + E S S + S+ ++L++ VEDTG+GIP AQ RVF PFMQ
Sbjct: 615 SIR-LFNRELHSSEKSFAPI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGP 668
Query: 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQ 690
S +R +GGTGIGLSISKCLV LM+G+I F S+P VGSTF+FTAV CK DIK
Sbjct: 669 SIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKG---NDIKS 725
Query: 691 SKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE 750
S+ FKG+ A+VVD +PVRA VT+YHL RLG+ ++++ + S +G +++
Sbjct: 726 SE-------FKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK 778
Query: 751 DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG 810
++L++K+ W+ ++S L++ N PKL LL ++ S + +
Sbjct: 779 ------LVLIDKETWL--KESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSR 830
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
VIMKPLRASM+ L++ L +K GV G+S LL K+I+VVDDN V
Sbjct: 831 EHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIV 889
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N VAAGALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME
Sbjct: 890 NLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVME 949
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
NE++ G + + A PILAMTADVI AT +ECLK MDGYVSKPFE E L
Sbjct: 950 RDLNERIERGEAPPE-CASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQL 1008
Query: 991 YRELAKFFKS 1000
Y E+A+FF++
Sbjct: 1009 YSEVARFFQN 1018
>gi|222619783|gb|EEE55915.1| hypothetical protein OsJ_04593 [Oryza sativa Japonica Group]
Length = 1001
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/970 (52%), Positives = 647/970 (66%), Gaps = 67/970 (6%)
Query: 52 SMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSA 111
S ++ M+ ++ +R++ L SMCD+RARMLQDQFNV++NH+ AL ILVSTFH+ K PSA
Sbjct: 73 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 132
Query: 112 LDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-------KSEPS 164
+DQ TFA Y RTAFERPL SGVAYA RV +REQFERQ G I M +S P
Sbjct: 133 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPG 192
Query: 165 P---------IRD---EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRP 212
P IR+ EYAPV+F Q+ HV S DM+SG EDR+NILRAR +GK VLT P
Sbjct: 193 PGPGEAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 252
Query: 213 FRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQ 272
F+LL ++ LGV+LT+ VYK +LP + ERI+A GY+GG FD+++LVE LL QLA +
Sbjct: 253 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 311
Query: 273 AILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWT 332
+I+VNVYD TN S P+ MYGD G + H S L+FGD RKH+M CR+ +K PW
Sbjct: 312 SIMVNVYDTTNES-PISMYGDDTGSG---MCHVSVLNFGDPSRKHEMHCRFEKKPPWPWL 367
Query: 333 ALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHE 392
A+T++F VI LL G+I I KVEDDFHKM ELK RAE ADVAKSQFLATVSHE
Sbjct: 368 AITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHE 427
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE
Sbjct: 428 IRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELET 487
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
V F+LR + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNLVGNS+KF
Sbjct: 488 VPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKF 547
Query: 513 TERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWD 572
TERGHI++ VH+ E M + + +G NTLSG A+ R SW+
Sbjct: 548 TERGHIYLTVHVVEEVMSCLEVE---------------TGIQNTNTLSGYPVANRRCSWE 592
Query: 573 KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632
+ L + E S S + S+ ++L++ VEDTG+GIP AQ RVF PFMQ
Sbjct: 593 SIR-LFNRELHSSEKSFAPI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGP 646
Query: 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQ 690
S +R +GGTGIGLSISKCLV LM+G+I F S+P VGSTF+FTAV CK DIK
Sbjct: 647 SIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKG---NDIKS 703
Query: 691 SKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE 750
S+ FKG+ A+VVD +PVRA VT+YHL RLG+ ++++ + S +G +++
Sbjct: 704 SE-------FKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK 756
Query: 751 DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG 810
++L++K+ W+ ++S L++ N PKL LL ++ S + +
Sbjct: 757 ------LVLIDKETWL--KESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSR 808
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
VIMKPLRASM+ L++ L +K GV G+S LL K+I+VVDDN V
Sbjct: 809 EHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIV 867
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N VAAGALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME
Sbjct: 868 NLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVME 927
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
NE++ G + + A PILAMTADVI AT +ECLK MDGYVSKPFE E L
Sbjct: 928 RDLNERIERGEAPPE-CASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQL 986
Query: 991 YRELAKFFKS 1000
Y E+A+FF++
Sbjct: 987 YSEVARFFQN 996
>gi|82466315|gb|ABB76249.1| hybrid type histidine kinase isoform a [Oryza sativa Indica Group]
Length = 1023
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/970 (52%), Positives = 647/970 (66%), Gaps = 67/970 (6%)
Query: 52 SMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSA 111
S ++ M+ ++ +R++ L SMCD+RARMLQDQFNV++NH+ AL ILVSTFH+ K PSA
Sbjct: 95 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 154
Query: 112 LDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-------KSEPS 164
+DQ TFA Y RTAFERPL SGVAYA RV ++EQFERQ G I M +S P
Sbjct: 155 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEQEQFERQQGWAIKKMYSSSNKKQSSPG 214
Query: 165 P---------IRD---EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRP 212
P IR+ EYAPV+F Q+ HV S DM+SG EDR+NILRAR +GK VLT P
Sbjct: 215 PGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 274
Query: 213 FRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQ 272
F+LL ++ LGV+LT+ VYK +LP + ERI+A GY+GG FD+++LVE LL QLA +
Sbjct: 275 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 333
Query: 273 AILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWT 332
+I+VNVYD TN S P+ MYGD G + H S L+FGD RKH+M CR+ +K PW
Sbjct: 334 SIMVNVYDTTNES-PISMYGDDTGSG---MCHVSVLNFGDPSRKHEMHCRFEKKPPWPWL 389
Query: 333 ALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHE 392
A+T++F VI LL G+I I KVEDDFHKM ELK RAE ADVAKSQFLATVSHE
Sbjct: 390 AITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHE 449
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE
Sbjct: 450 IRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELET 509
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
V F+LR + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNL+GNS+KF
Sbjct: 510 VPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRVRQIITNLIGNSIKF 569
Query: 513 TERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWD 572
TERGHI++ VH+ E M + + +G NTLSG A+ R SW+
Sbjct: 570 TERGHIYLTVHVVEEVMSCLEVE---------------TGIQNTNTLSGYPVANRRRSWE 614
Query: 573 KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632
+ L + E S S + S+ ++L++ VEDTG+GIP AQ RVF PFMQ
Sbjct: 615 SIR-LFNRELHSSEKSFAPI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGP 668
Query: 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQ 690
S +R +GGTGIGLSISKCLV LM+G+I F S+P VGSTF+FTAV CK DIK
Sbjct: 669 SIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKG---NDIKS 725
Query: 691 SKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE 750
S+ FKG+ A+VVD +PVRA VT+YHL RLG+ ++++ + S +G +++
Sbjct: 726 SE-------FKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK 778
Query: 751 DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG 810
++L++K+ W+ ++S L++ N PKL LL ++ S + +
Sbjct: 779 ------LVLIDKETWL--KESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSR 830
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
VIMKPLRASM+ L++ L +K GV G+S LL K+I+VVDDN V
Sbjct: 831 EHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIV 889
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N VAAGALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME
Sbjct: 890 NLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVME 949
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
NE++ G + + A PILAMTADVI AT +ECLK MDGYVSKPFE E L
Sbjct: 950 RDLNERIERGEAPPE-CASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQL 1008
Query: 991 YRELAKFFKS 1000
Y E+A+FF++
Sbjct: 1009 YSEVARFFQN 1018
>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/985 (50%), Positives = 648/985 (65%), Gaps = 62/985 (6%)
Query: 30 IQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
++ + +WL + LW+ ++ IY M + +R+E L SMCD+RARMLQDQFNV+
Sbjct: 62 VRDSSSWL---IPLWVSSWVLVASLIYLCMSYQAVGKRRESLASMCDERARMLQDQFNVS 118
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
+NH+ AL ILVSTFH+ K PSA+DQ TFA Y RTAFERPL SGVAY RV A+REQFE
Sbjct: 119 MNHLQALAILVSTFHHSKTPSAIDQKTFARYAERTAFERPLTSGVAYGVRVTHAEREQFE 178
Query: 150 RQHGMTITTMKS-------------EPSPIRD---EYAPVMFYQEPMSHVKSLDMMSGEE 193
RQ G +I M S E + +R+ EYAPV+F Q+ HV S D++SG +
Sbjct: 179 RQQGWSIKKMYSSKTKNQSQGPGNAEDAEVREPAEEYAPVIFAQDAYKHVISFDLLSGAD 238
Query: 194 DRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGG 253
DR+N+LRAR +GK VLT PF+LL ++ LGV+ T+ VYK +LP + +ERI+A GY+GG
Sbjct: 239 DRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYAVYKYELPANARPQERIQAAIGYLGG 297
Query: 254 PFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDS 313
FD+E+LV+ LL QLAG Q+I+VNVYD TN P+ MYG + M + S L+FGD
Sbjct: 298 IFDIEALVDKLLHQLAGKQSIMVNVYDTTNER-PISMYGSNDTGSGMCQV--STLNFGDP 354
Query: 314 FRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV 373
RKH M CR+ Q PW A+TT+ VI LL+GYI++ A I +VEDDF +M LK
Sbjct: 355 SRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKK 414
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
RAE AD+AKSQFLATVSHEIRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GK L++L
Sbjct: 415 RAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKTLVSL 474
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
INEVLD+AKIE+ KLELE V F+LR + DD+LSLF K++ KG+ELAVFVSD+VP+ ++G
Sbjct: 475 INEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIG 534
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DPGR RQIITNLVGNS+KFTE+GHI++ VH+ E M + + +GT
Sbjct: 535 DPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMHCLEVE---------------TGT 579
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
NTLSG A+ + SW+ F+ F + M + S+ ++LM+ VEDTG
Sbjct: 580 QYTNTLSGYPVANRKRSWENFRL------FSRELNSSEMPFAPIASDSISLMISVEDTGA 633
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
GIP AQ RVF PFMQ S +R +GGTGIGLSISKCLV LM+G+I F S+PQVGSTF+F
Sbjct: 634 GIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGSTFTF 693
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
TAV + + S++E+ FK + A+VVD +PVRA VT+YHL RLG+ ++++
Sbjct: 694 TAVLTR--------VHSSRNENKSSEFKEINALVVDHRPVRAKVTKYHLQRLGVQTELTT 745
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+ S KN S K ++L++K+ W+ ++S L+ N KL
Sbjct: 746 DLDQYIS--KNNCGSQIAK----LVLIDKETWL--KESHSMPLLVTKLRNKDQPDSTKLF 797
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
LL S + + + VIMKPLRASM+ LQ+ L +K GV G+S
Sbjct: 798 LLENPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVV-GNSTL 856
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
LL K+I+VVDDN VN VAAGALKK+GA V CA S K A+ L+ PH FDACFMDIQ
Sbjct: 857 GSLLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQ 916
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDGFEAT+RIR ME NEQ+ G + + R + PILAMTADVI AT ++CL
Sbjct: 917 MPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVR-QWRTPILAMTADVIQATHEQCL 975
Query: 974 KCGMDGYVSKPFEEENLYRELAKFF 998
K MDGYVSKPFE E LYRE+A+FF
Sbjct: 976 KSEMDGYVSKPFEGEQLYREVARFF 1000
>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
Length = 1007
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/985 (50%), Positives = 647/985 (65%), Gaps = 62/985 (6%)
Query: 30 IQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
++ + +WL + LW+ ++ IY M + +R+E L SMCD+RARMLQDQFNV+
Sbjct: 62 VRDSSSWL---IPLWVSSWVLVASLIYLCMSYQAVGKRRESLASMCDERARMLQDQFNVS 118
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
+NH+ AL ILVSTFH+ K PSA+DQ TFA Y RTAFERPL SGVAY RV A+REQFE
Sbjct: 119 MNHLQALAILVSTFHHSKTPSAIDQKTFARYAERTAFERPLTSGVAYGVRVTHAEREQFE 178
Query: 150 RQHGMTITTMKS-------------EPSPIRD---EYAPVMFYQEPMSHVKSLDMMSGEE 193
RQ G +I M S E + +R+ EYAPV+F Q+ HV S D++SG +
Sbjct: 179 RQQGWSIKKMYSSKTKNQSQGPGNAEDAEVREPAEEYAPVIFAQDAYKHVISFDLLSGAD 238
Query: 194 DRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGG 253
DR+N+LRAR +GK VLT PF+LL ++ LGV+ T+ VYK +LP + +ERI+A GY+GG
Sbjct: 239 DRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYAVYKYELPANARPQERIQAAIGYLGG 297
Query: 254 PFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDS 313
FD+E+LV+ LL QLAG Q+I+VNVYD TN P+ MYG + M + S L+FGD
Sbjct: 298 IFDIEALVDKLLHQLAGKQSIMVNVYDTTNER-PISMYGSNDTGSGMCQV--STLNFGDP 354
Query: 314 FRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV 373
RKH M CR+ Q PW A+TT+ VI LL+GYI++ A I +VEDDF +M LK
Sbjct: 355 SRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKK 414
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
RAE AD+AKSQFLATVSHEIRTPMNG+LGML +L+DTDL +TQ+DY +TAQ GK L++L
Sbjct: 415 RAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKTLVSL 474
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
INEVLD+AKIE+ KLELE V F+LR + DD+LSLF K++ KG+ELAVFVSD+VP+ ++G
Sbjct: 475 INEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIG 534
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DPGR RQIITNLVGNS+KFTE+GHI++ VH+ E M + + +G
Sbjct: 535 DPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMHCLEVE---------------TGI 579
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
NTLSG A+ + SW+ F+ F + M + S+ ++LM+ VEDTG
Sbjct: 580 QYTNTLSGYPVANRKRSWENFRL------FSRELNSSEMPFAPIASDSISLMISVEDTGA 633
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
GIP AQ RVF PFMQ S +R +GGTGIGLSISKCLV LM+G+I F S+PQVGSTF+F
Sbjct: 634 GIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPQVGSTFTF 693
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
TAV + + S++E+ FK + A+VVD +PVRA VT+YHL RLG+ ++++
Sbjct: 694 TAVLTR--------VHSSRNENKSSEFKEINALVVDHRPVRAKVTKYHLQRLGVQTELTT 745
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+ S KN S K ++L++K+ W+ ++S L+ N KL
Sbjct: 746 DLDQYIS--KNNCGSQIAK----LVLIDKETWL--KESHSMPLLVTKLRNKDQPDSTKLF 797
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
LL S + + + VIMKPLRASM+ LQ+ L +K GV G+S
Sbjct: 798 LLENPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVV-GNSTL 856
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
LL K+I+VVDDN VN VAAGALKK+GA V CA S K A+ L+ PH FDACFMDIQ
Sbjct: 857 GSLLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQ 916
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDGFEAT+RIR ME NEQ+ G + + R + PILAMTADVI AT ++CL
Sbjct: 917 MPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVR-QWRTPILAMTADVIQATHEQCL 975
Query: 974 KCGMDGYVSKPFEEENLYRELAKFF 998
K MDGYVSKPFE E LYRE+A+FF
Sbjct: 976 KSEMDGYVSKPFEGEQLYREVARFF 1000
>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
Length = 999
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/950 (51%), Positives = 638/950 (67%), Gaps = 53/950 (5%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L LWI+G S+ I+ M+ + +R+E+L SMCD+RARMLQDQFNV++NH+ A
Sbjct: 68 WWRKLLFLWIIGWFLGSLWIFWFMNSQAVEKRREMLASMCDERARMLQDQFNVSMNHLQA 127
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
L IL+STFH+ K+PSA+DQ TFA Y RTAFERPL SGVAYA +V+ ++REQFE+Q
Sbjct: 128 LAILISTFHHAKDPSAIDQITFARYAERTAFERPLTSGVAYAVKVLRSEREQFEKQQRWK 187
Query: 156 ITTMKSEPSPI----------RDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATG 205
I M S P RDEYAPV+F Q+ HV S DM++G+EDRENILRAR +G
Sbjct: 188 IKRMDSTEQPPAREEDADLENRDEYAPVIFAQDTYKHVISFDMLTGKEDRENILRARESG 247
Query: 206 KAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLL 265
K VLT PFRLL S LGV+LT+ VYKS+L ++T ERI+A GY+GG FDVE+LV+ LL
Sbjct: 248 KGVLTAPFRLLKSRRLGVILTYAVYKSELTSKATPAERIQAAIGYLGGIFDVEALVDKLL 307
Query: 266 GQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQ 325
QLA +++VNVYD TN +P+IMYG + + L H S L+FGD RKH+M CR+ Q
Sbjct: 308 HQLACKHSMMVNVYDKTNPDEPIIMYGSNMTN--VGLYHISTLNFGDPIRKHEMHCRFKQ 365
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQF 385
K+ PW A+TT+ VI LLVGYI + I KVEDD+ +M ELK RAEAADVAKSQF
Sbjct: 366 KSPLPWLAITTSIGTLVIALLVGYIFHATVSRIAKVEDDYRQMMELKKRAEAADVAKSQF 425
Query: 386 LATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
LATVSHEIRTPMNG+LGML +L+DTDL TQ DY +TAQ GKAL++LINEVLD+AKIE+
Sbjct: 426 LATVSHEIRTPMNGVLGMLQMLMDTDLDITQEDYVRTAQASGKALVSLINEVLDQAKIES 485
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
KLELEAV F+LRA+LDD+LSLF K++ KG+ELAV+VSD+VP+ ++GD GR RQIITNL
Sbjct: 486 GKLELEAVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSDQVPDVLVGDHGRIRQIITNL 545
Query: 506 VGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAA 565
+GNS+KFTERGHI++ VH+ E + D + E +TL G A
Sbjct: 546 MGNSIKFTERGHIYLTVHIFEEVLNSLDKEIE---------------VHSTDTLCGFPVA 590
Query: 566 DGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFM 625
+ R SW+ FK+ E S+ S+++ S + L++ VEDTG+GIPL AQ RVF
Sbjct: 591 NRRRSWESFKNF-KLELPASDPSLLST-----SSNHINLIISVEDTGVGIPLEAQSRVFT 644
Query: 626 PFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVF 685
PFMQ S SR +GGTGIGLSISKCLV LM+G+I FVS+PQ+GSTF+FT V +
Sbjct: 645 PFMQVGPSISRIHGGTGIGLSISKCLVGLMKGEIGFVSQPQIGSTFTFTVVLTRA----C 700
Query: 686 EDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNG 745
+ + KS + F G+ A+VVD +P RA VT+YHL RLG+ + S +G
Sbjct: 701 TNSNEYKSSE----FHGMIALVVDHRPARAKVTKYHLQRLGVNAILEIDPNQVLSRLTSG 756
Query: 746 LTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECD 805
++ +++LVEK+ W +DS ++ K G+ +PK++LLA S +
Sbjct: 757 TSTI------NMVLVEKETW--SKDSSIWPFIIS-KLKGNQLDIPKILLLANPTSSVNNN 807
Query: 806 KAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG-VPNGSSFHQGLLRGKKILV 864
+ + + T+I KPLRASM+ L++ + + + G +P S +GLL K+ILV
Sbjct: 808 TSSSMEYISTIITKPLRASMLQVSLRRAMGCGDGEHSRNGRLPQLSL--RGLLHEKQILV 865
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATR 924
VDDN VN VA GALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEAT+
Sbjct: 866 VDDNIVNLRVAYGALKKYGAEVTCAESGKKAIGMLKPPHKFDACFMDIQMPEMDGFEATK 925
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
RIR+ME+ N+Q+ V+ + H+PILAMTADVI AT +ECL+
Sbjct: 926 RIREMEADINKQIECREVPVETSENVLHWHVPILAMTADVIQATHEECLR 975
>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
Length = 1019
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/951 (52%), Positives = 636/951 (66%), Gaps = 59/951 (6%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
+R+E L SMCD+RARMLQDQFNV++NH+ AL ILVSTFH+ + PSA++Q TFA Y RTA
Sbjct: 107 KRRESLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHAQTPSAINQATFARYAERTA 166
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSE------PSP-------IRD---E 169
FERPL SGVAYA RV +R+QFERQ G +I M S P P IR+ E
Sbjct: 167 FERPLTSGVAYAVRVTHGERDQFERQQGWSIKKMYSSKKKSPGPGPGDAATAEIREPAEE 226
Query: 170 YAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPV 229
YAPV+F Q+ HV S DM+SG++DRENILRAR +GK VLT PF+LL ++ LGV+ T+ V
Sbjct: 227 YAPVIFAQDAYKHVLSFDMLSGDDDRENILRARESGKGVLTAPFKLL-NNRLGVISTYTV 285
Query: 230 YKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLI 289
YKS+ P + +ERI+A GY+GG FD+E+LV+ LL QLAG Q+I+VNVYD TN P+
Sbjct: 286 YKSEFPAYARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-EKPIS 344
Query: 290 MYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGY 349
MYG + G M H S L+FGD R+H+M CR+ QK PW A+T++ VI LL GY
Sbjct: 345 MYGSNDTGGGM--YHNSTLNFGDPSRRHEMHCRFMQKPPLPWLAITSSLGTLVIALLTGY 402
Query: 350 ILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
I + I KVEDD+ M ELK RAEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+D
Sbjct: 403 IFHATVHRIAKVEDDYQNMMELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLMD 462
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
TDL +TQ+D+ +TAQ GKAL++LINEVLD+AKIE+ KLELEAV F+LR + DD+LSLF
Sbjct: 463 TDLDTTQQDFVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRIVCDDILSLFC 522
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529
K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNL+ NS+KFTERGHI++ VH+ E M
Sbjct: 523 GKAQEKGLELAVYVSDQVPQTLIGDPGRMRQIITNLMSNSIKFTERGHIYLTVHVVEEVM 582
Query: 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589
G E ++GT NTLSG A+ R SW+ F+ L D + S
Sbjct: 583 ------------GCLE---VKTGTHYTNTLSGYPVANRRRSWESFR-LFDMDLHSS---- 622
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
M + + + L++ VEDTG GIP AQ R+F P+MQ S +R +GGTGIGLSISK
Sbjct: 623 -EMPFTPVTPDTIRLIISVEDTGAGIPFEAQYRIFTPYMQVGPSIARIHGGTGIGLSISK 681
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
CLV LM+G+I FVS+P VGSTFSFTAV + + + +KS GFKG+ A+VVD
Sbjct: 682 CLVHLMKGEIGFVSKPHVGSTFSFTAVLTRAQ----SNGNLNKSS----GFKGINALVVD 733
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+PVRA V +YHL RLG+ ++++ + G +++ ++LV+K+ W+ +
Sbjct: 734 HRPVRAKVAKYHLQRLGVQTELTTDVNQIIPKLNCGPLAAK------LVLVDKETWL--K 785
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
+S L+ N PK LL S + + VI KPLRASM+
Sbjct: 786 ESHSMPHLVSKLRNKDQADPPKFFLLENPTSSIKSSSHISSEHNLNVIKKPLRASMLQVS 845
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
L+Q L +K GV G+S LL K+I+VVDDN VN VAAGALKK+GA V CA
Sbjct: 846 LRQALGGVDKVHCKNGVV-GNSTLGSLLHKKQIIVVDDNAVNLKVAAGALKKYGAVVTCA 904
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
S K A+ L PH FDACFMDIQMPEMDGF+AT+ IR+MESK NE++ +G +
Sbjct: 905 DSGKKAIAYLSPPHIFDACFMDIQMPEMDGFQATKEIRKMESKLNEKIESGDVPPECVNV 964
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
R PILAMTADVI AT++ECLKC MDGYVSKPFE E LYRE+ +FF++
Sbjct: 965 R-RWRTPILAMTADVIQATYEECLKCEMDGYVSKPFEGEQLYREVTRFFQN 1014
>gi|302821913|ref|XP_002992617.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
gi|300139581|gb|EFJ06319.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
Length = 1096
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/1000 (51%), Positives = 638/1000 (63%), Gaps = 126/1000 (12%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQ----------- 114
RR+E L +MC +RA MLQDQFN ++NHV +LT LV+TFH K PSALDQ
Sbjct: 156 RRRETLANMCKERAWMLQDQFNSSMNHVRSLTALVTTFHLAKQPSALDQARQFFCFSLKN 215
Query: 115 ----------------------DTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQH 152
+TFA YT RT+FERPL+SGVAYA V QR FE +
Sbjct: 216 KASFRAFGVGTLAQLSWLVALQETFAAYTARTSFERPLMSGVAYAHNVEHWQRRAFEEEM 275
Query: 153 GMTITTMKSEPSPIR--DEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLT 210
G +I M+S + DEYAP + Q ++H+ S+DMMSGEEDRENILR+RA+GK LT
Sbjct: 276 GWSIKEMRSNAPRAQNLDEYAPTVLSQNTLAHLASVDMMSGEEDRENILRSRASGKGALT 335
Query: 211 RPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAG 270
PFRLL S HLGVVLTF VYK+ LP +T +RI+ATAG L+
Sbjct: 336 SPFRLLESDHLGVVLTFTVYKTDLPDDATPAQRIQATAG-----------------SLSE 378
Query: 271 NQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTP 330
+Q I+VNV D+TN S+PL+MYG DG+ + +L+FGD FRKH+M CR++++AS
Sbjct: 379 SQTIIVNVNDVTNKSNPLVMYGPNIPDGNE--IEVCQLEFGDPFRKHEMRCRFNKEASVV 436
Query: 331 WTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVS 390
WTA+TT F + VI LLV I Y A I KVE+D+ KM++LKVRAE+ADVAKSQFLATVS
Sbjct: 437 WTAITTTFGIVVIVLLVAQIFYAAGNRIAKVEEDYRKMEDLKVRAESADVAKSQFLATVS 496
Query: 391 HEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLEL 450
HEIRTPMNG+LGML +L+DT+L STQRDYA TA GK LI LINEVLD+AKIE+ ++EL
Sbjct: 497 HEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTALESGKQLIKLINEVLDQAKIESGRMEL 556
Query: 451 EAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSV 510
E V F LR ILDD+L+ FS ++++KGIELA +VS++VP+ VLGDP R QI+TNLVGNS+
Sbjct: 557 ETVPFKLRTILDDILTPFSAENKDKGIELAAYVSERVPDVVLGDPVRLHQIVTNLVGNSI 616
Query: 511 KFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG------VCRSGTGQFNTLSGLEA 564
KFT+RGHIFV VHL E A+ E TE G +TLSGLEA
Sbjct: 617 KFTDRGHIFVSVHLEEDVKAAMSAQCEACSKQVTETQDHSDKLNTVDAAGSCSTLSGLEA 676
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
AD RN+W+ FK ++ E + + + V L+ VEDTG+GIP+ AQERVF
Sbjct: 677 ADRRNNWETFKLILKQEKSR-------LTTHKQPVDTVKLVFSVEDTGVGIPVHAQERVF 729
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCK- 681
PFMQADSSTSR+YGGTGIGLSISKCLVELM+G+I FVS VG+TF FT F G +
Sbjct: 730 SPFMQADSSTSRNYGGTGIGLSISKCLVELMKGEIGFVSSLGVGTTFWFTVNFKVGDLEA 789
Query: 682 ---EYVFEDIKQSK----SEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
+ E KQ + S L GLKA+VVD +PVR+ VT+YHL RLGI V ++S
Sbjct: 790 LEAAHSAECSKQQRAAHSSTPLTTQLSGLKALVVDGRPVRSEVTRYHLRRLGIQVDVASD 849
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+ A + ++ D+IL++KD W S + +++ + P PKL+L
Sbjct: 850 VSSALAHQRSK--------NLDMILIDKDAWGSSTGLSYPSKIKEAGPT----LAPKLVL 897
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH- 853
LA + D+ KAKA GF+D VI KPLRAS IA L++ L + KR+ SS
Sbjct: 898 LAFD---DDEHKAKAAGFSDNVIKKPLRASHIANHLEKALGLDLKRRTRESSTPTSSSSD 954
Query: 854 ---------------QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
LL GK ILVVDDN VNR VAAGAL+K+GA VEC S + A++K
Sbjct: 955 TSASINSGSGSSNNLHSLLTGKWILVVDDNKVNRRVAAGALQKYGARVECVESGRLAIEK 1014
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L+ PH FDACFMDIQMPEMDGFEATRRIR E + GGS H+PIL
Sbjct: 1015 LEPPHKFDACFMDIQMPEMDGFEATRRIRCFEKR-------GGS-----------HVPIL 1056
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
AMTADVI AT+DEC +CGMD YVSKPFEE+ LYR +AKFF
Sbjct: 1057 AMTADVIQATYDECRRCGMDDYVSKPFEEKQLYRAVAKFF 1096
>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica Group]
Length = 1186
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/927 (53%), Positives = 633/927 (68%), Gaps = 45/927 (4%)
Query: 30 IQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVT 89
++ +R W +AL+L ++ S+ I+ M + RR E L +MCD+RARMLQDQFNV+
Sbjct: 233 VKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENLENMCDERARMLQDQFNVS 292
Query: 90 VNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE 149
+NHVHAL ILVSTFH+ KNPSA+DQ TF ++T RT FERPL+SGVAYA +V+ ++RE FE
Sbjct: 293 MNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSERELFE 352
Query: 150 RQHGMTITTMKSE--------------PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDR 195
++ G I M++E PSP++DEYAPV+F QE + H+ S+DMMSG+EDR
Sbjct: 353 QKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDR 412
Query: 196 ENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPF 255
+NILR+RATGK LT PF LL S+HLGVVLTF VYK LPP +T EERI+AT GY+G F
Sbjct: 413 DNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEERIEATLGYLGASF 472
Query: 256 DVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFR 315
DV SLVE LL QLA Q I+V +YD+TN + P MY D LH S +DFGD R
Sbjct: 473 DVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--LHISNIDFGDPTR 530
Query: 316 KHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRA 375
KH M CR+ S PW+A+ + + +I LLVGYI+Y + + ED++ M++LK RA
Sbjct: 531 KHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKGRA 590
Query: 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALIN 435
EAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L +TQRD+ TAQ GK+LI LIN
Sbjct: 591 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLINLIN 650
Query: 436 EVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP 495
EVLD AKIE+ K+ELEAV F++R ILD+V+SLFSEKS KGIELAV VSD+VP+ ++GDP
Sbjct: 651 EVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDP 710
Query: 496 GRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ 555
RFRQIITNLVGNS+KFTE+GHIF++VHL E K +A D+T E T
Sbjct: 711 WRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPE-NIEVTANSKNTMP 769
Query: 556 FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615
+NTLSGLE A+ R + + F+ D S+ + V L+V VEDTGIGI
Sbjct: 770 YNTLSGLEVANNRKTLESFRMFKD---------------SSDAIDSVNLLVTVEDTGIGI 814
Query: 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675
AQ R+F PFMQAD STSR YGGTGIGLSI+K LVELM G+I FVS+P V STFSFTA
Sbjct: 815 TKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTA 874
Query: 676 VFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSI 735
+F + ++ DIK+ E PP F+G++A+VVD + RA VT YHL RLGI ++++
Sbjct: 875 IFKENRKDP-GDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGIQCDLAATS 933
Query: 736 KDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG--FNAQLLDWKPNGHVFK---LP 790
+ A S SS K +++LV+K+ W GEDSG F L+D + G + +P
Sbjct: 934 ESALSALLESCNSSV-KSSLNMVLVDKEAW--GEDSGLAFFRCLIDLRLKGTLKSWQTMP 990
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS 850
K LLA +I+ + D + G++++ I KPLR S +AACL + L GR + S
Sbjct: 991 KFFLLAGSITPADSDCLRLAGYSNS-IRKPLRLSTVAACLSKALGVG---LTGRRSRDNS 1046
Query: 851 SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
+ +L GK ILVVDDN VNR+VAAGALKK+GA V C S K A+ +LQ PH FDACFM
Sbjct: 1047 LVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFM 1106
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQM 937
D+QMPEMDGFEATR +R +ESK N+ +
Sbjct: 1107 DVQMPEMDGFEATRLVRSVESKINDTI 1133
>gi|89892466|gb|ABD79028.1| histidine kinase SHK278 [Striga asiatica]
Length = 1002
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/986 (51%), Positives = 649/986 (65%), Gaps = 97/986 (9%)
Query: 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHA 95
W K L+ W+ +S+S + M + +RKE L SMCD+RARMLQDQFNV++NH+ A
Sbjct: 84 WWRKFLIGWLAMGIIVSLSAFWYMSSQANEKRKETLASMCDERARMLQDQFNVSMNHIQA 143
Query: 96 LTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMT 155
+++++S FH+ KNPSA+DQ TFA YT RT+FERPL SGVAYA RV+ ++REQFE Q G T
Sbjct: 144 MSVMISIFHHGKNPSAIDQSTFARYTERTSFERPLTSGVAYAVRVLHSEREQFEAQQGWT 203
Query: 156 ITTMKS----------------EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENIL 199
I M EPS +++EYAPV+F QE ++HV S+DM+SG+EDREN+L
Sbjct: 204 IKRMDKIEKNPVHDDKYNQADLEPSLVQEEYAPVIFAQETVAHVISVDMLSGKEDRENVL 263
Query: 200 RARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVES 259
RAR +GK VLT PFRLL ++ LGV+LTF VYK +LPP + + +RI+ TAG G
Sbjct: 264 RARESGKGVLTAPFRLLKTNRLGVILTFAVYKRELPPDAKLSDRIQETAGVACG------ 317
Query: 260 LVENLLGQLAGNQAILVNVYDMTNASDPLIMYG-DQNQDGDMSLLHE-SELDFGDSFRKH 317
EN L QLA Q ILVNVYDMTN++DP+ MYG + + DG LH S L+FGD FRKH
Sbjct: 318 --ENSLHQLASKQTILVNVYDMTNSTDPISMYGSNPSSDG----LHRVSSLNFGDPFRKH 371
Query: 318 KMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEA 377
+M CR+ QK P A+ T+ + VI +LV I+Y I KVEDD+H+M ELK RAEA
Sbjct: 372 EMHCRFKQKQPWPLAAIFTSVGILVIDMLVAQIIYATVNRIAKVEDDYHQMMELKRRAEA 431
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
ADVAKSQFLATVSHEIRTPMNG+LGML +L+DT L TQ+DY +TA+ GKAL++LINEV
Sbjct: 432 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTRLDETQQDYVRTARESGKALVSLINEV 491
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD+AKIE+ KLELEAV F+LRAILDDVLSLFS KS++K +ELAV+VS KVP ++GDPGR
Sbjct: 492 LDQAKIESGKLELEAVSFDLRAILDDVLSLFSGKSQDKKVELAVYVSSKVPSTLIGDPGR 551
Query: 498 FRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFN 557
FRQI+TNLVGNS+KFT++GHIFV V+L E M +T+A+ TG +
Sbjct: 552 FRQIVTNLVGNSIKFTDKGHIFVTVYLVEEVM-ETEAE-----------------TG--S 591
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
+LSGL D R SW +F+ Q N N + + V +MV VEDTG GIP+
Sbjct: 592 SLSGLPVVDRRRSWSRFRVF-----SQDN----NTPLAGSSPDQVNVMVSVEDTGQGIPV 642
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
AQ RVF PFMQ S +R +GGTGIGLSISKCLV+LM+G+I S PQVGSTF+FTAVF
Sbjct: 643 EAQSRVFNPFMQVGPSITRTHGGTGIGLSISKCLVQLMKGEIGLASTPQVGSTFTFTAVF 702
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD 737
E + +Q S + F G +A++VD PVRA V++YH+ RLGI V++ +
Sbjct: 703 --TAEQQQQQQQQPNSSE----FHGTRALLVDSNPVRAKVSRYHIQRLGIQVEVVPEVGP 756
Query: 738 ASSTAKNGLTSSEDKFQP-DIILVEKDCWISG-EDSGFNAQLLDWKPNGHVFKLPKLILL 795
GL K +P I+ VE++ W E+ G + W+ PK+++L
Sbjct: 757 -------GL-----KKKPVQIVFVEEEMWERNVEELGKGS----WQ--------PKILIL 792
Query: 796 ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL-STENKRQAGRGVPNGSSFHQ 854
+ + A V++KPLR SM+ A LQ+ + R + S
Sbjct: 793 S-----NSPGIGPPPVPAVAVVVKPLRVSMVGATLQRAMGGLRGNRGTQDLLHKKLSSLS 847
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
GLL+G++ILVVDDN VN VAAG LKK+GA V A K A+ L PH F ACFMDIQM
Sbjct: 848 GLLQGRRILVVDDNRVNLRVAAGCLKKYGADVVHAERGKEAISLLTPPHLFHACFMDIQM 907
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
PEMDGFEATRRIR +ES N+ + +G S++ H+PILAMTADVI AT +EC K
Sbjct: 908 PEMDGFEATRRIRDIESGINKGIEDGRLSLESYGNVSNWHVPILAMTADVIQATSEECSK 967
Query: 975 CGMDGYVSKPFEEENLYRELAKFFKS 1000
CGMDGYVSKPFE + LYRE+++FF +
Sbjct: 968 CGMDGYVSKPFEADQLYREVSRFFHT 993
>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
Length = 925
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/891 (54%), Positives = 615/891 (69%), Gaps = 45/891 (5%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
RR E L +MCD+RARMLQDQFNV++NHVHAL ILVSTFH+ KNPSA+DQ TF ++T RT
Sbjct: 8 RRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTT 67
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSE--------------PSPIRDEYA 171
FERPL+SGVAYA +V+ ++RE FE++ G I M++E PSP++DEYA
Sbjct: 68 FERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYA 127
Query: 172 PVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYK 231
PV+F QE + H+ S+DMMSG+EDR+NILR+RATGK LT PF LL S+HLGVVLTF VYK
Sbjct: 128 PVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYK 187
Query: 232 SKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMY 291
LPP +T EERI+AT GY+G FDV SLVE LL QLA Q I+V +YD+TN + P MY
Sbjct: 188 YDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMY 247
Query: 292 GDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYIL 351
D LH S +DFGD RKH M CR+ S PW+A+ + + +I LLVGYI+
Sbjct: 248 DSDVIASDD--LHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYII 305
Query: 352 YGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD 411
Y + + ED++ M++LK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+
Sbjct: 306 YATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 365
Query: 412 LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK 471
L +TQRD+ TAQ GK+LI LINEVLD AKIE+ K+ELEAV F++R ILD+V+SLFSEK
Sbjct: 366 LDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEK 425
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531
S KGIELAV VSD+VP+ ++GDP RFRQIITNLVGNS+KFTE+GHIF++VHL E K
Sbjct: 426 SWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRK 485
Query: 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIIN 591
+A D+T E T +NTLSGLE A+ R + + F+ D
Sbjct: 486 MEALDDTSPE-NIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD------------ 532
Query: 592 MMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651
S+ + V L+V VEDTGIGI AQ R+F PFMQAD STSR YGGTGIGLSI+K L
Sbjct: 533 ---SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRL 589
Query: 652 VELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711
VELM G+I FVS+P V STFSFTA+F + ++ DIK+ E PP F+G++A+VVD +
Sbjct: 590 VELMGGEIGFVSKPGVSSTFSFTAIFKENRKDP-GDIKRYCPEPTPPDFQGMRALVVDGR 648
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
RA VT YHL RLGI ++++ + A S SS K +++LV+K+ W GEDS
Sbjct: 649 CARAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSV-KSSLNMVLVDKEAW--GEDS 705
Query: 772 G--FNAQLLDWKPNGHVFK---LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
G F L+D + G + +PK LLA +I+ + D + G++++ I KPLR S +
Sbjct: 706 GLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNS-IRKPLRLSTV 764
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
AACL + L GR + S + +L GK ILVVDDN VNR+VAAGALKK+GA V
Sbjct: 765 AACLSKALGVG---LTGRRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIV 821
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
C S K A+ +LQ PH FDACFMD+QMPEMDGFEATR +R +ESK N+ +
Sbjct: 822 TCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTI 872
>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
Length = 1049
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/904 (52%), Positives = 611/904 (67%), Gaps = 44/904 (4%)
Query: 116 TFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM--------------KS 161
TF ++T RT FERPL+SGVAYA +V+ +R+QFE QHG I M K
Sbjct: 167 TFEDFTARTTFERPLMSGVAYALKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNLEKL 226
Query: 162 EPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHL 221
EPSP++DEYAPV+F QE + H+ S+DMMSG+ED +NILR+R+TGK LT PF+LL S+HL
Sbjct: 227 EPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDHDNILRSRSTGKGALTSPFKLLKSNHL 286
Query: 222 GVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDM 281
GVVLTF VYK LPP +T +ERI AT GY+G FDV SLV+ LL QLA + I+VN+YD
Sbjct: 287 GVVLTFTVYKYDLPPNATPQERIHATLGYLGASFDVPSLVDKLLEQLASKRKIVVNLYDT 346
Query: 282 TNASDPLIMYG-DQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFL 340
TN + P+ MYG D GD LH S +DFGD RKH+M CR+ + S PW+A+ + +
Sbjct: 347 TNHTSPIEMYGSDFTPSGD---LHISSIDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAV 403
Query: 341 FVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGI 400
+I LLVG+I+Y + K E D+ M+ELK +AEAADVAKSQFLATVSHEIRTPMNG+
Sbjct: 404 AIIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQAEAADVAKSQFLATVSHEIRTPMNGV 463
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML +L+DT+L +TQ+D+ TAQ GK LI LINEVLD AKIE+ ++ELEAV F++R I
Sbjct: 464 LGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDI 523
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
LD+V+SLF EKS+ KGIELAV VSD+VP+ ++GDP RFRQIITNLVGNS+KFTE+GHIFV
Sbjct: 524 LDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFV 583
Query: 521 KVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ-FNTLSGLEAADGRNSWDKFKHLID 579
+VHL + K + ++ E + S +NTLSGLE AD S + F +
Sbjct: 584 QVHLVKELSRK--GNNFCDVSAHNREILYDSDNSMLWNTLSGLEVADSWRSLENFTMFKN 641
Query: 580 AEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYG 639
SNG ++ + L V VEDTGIGI AQ R+F PFMQADSSTSR YG
Sbjct: 642 ---------------SNGETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTYG 686
Query: 640 GTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG 699
GTGIGLSI+K LVELM G+I F S+ VGSTFSFTA+F K D+K+ SE P
Sbjct: 687 GTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIF-KENRGCPGDMKRYYSEPTPLD 745
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIIL 759
F+G++A+++D + RA VT YHL RLGI + ++ + S+++ + K PD++L
Sbjct: 746 FQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSESESASSALMKACTSSKNNPDMVL 805
Query: 760 VEKDCWISGEDSGFNAQLLDWKPNG-HVFK--LPKLILLATNISKDECDKAKAGGFADTV 816
V+ + W G F + +D + G H F +PK ILL ++IS E D + GF D
Sbjct: 806 VDTEAWGKGSGLAFYHRFVDCQLKGAHKFSQPMPKTILLGSSISPVESDYLRLTGFGD-C 864
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAA 876
I KPLR S I ACL++ L RQ R + S Q +L GK+ILVVDDN VNR VAA
Sbjct: 865 IRKPLRLSTIVACLRKTLGVGVTRQQSR---DQSLVLQSVLTGKQILVVDDNAVNRKVAA 921
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
G+LKK+G+TV C S A+D L+ PH FDACFMD+QMPEMDGFEATR IR +E K N+
Sbjct: 922 GSLKKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDVQMPEMDGFEATRLIRSIEKKINDM 981
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+M G S + + H+PILAMTADVI ATF++C++CGMDGYVSKPFEE+ LY +A
Sbjct: 982 IMMGEISANNYGNKAHWHVPILAMTADVIQATFEKCMQCGMDGYVSKPFEEQQLYSAVAH 1041
Query: 997 FFKS 1000
F ++
Sbjct: 1042 FLET 1045
>gi|57900198|dbj|BAD88305.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
gi|57900221|dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
Length = 866
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/906 (51%), Positives = 597/906 (65%), Gaps = 67/906 (7%)
Query: 116 TFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-------KSEPSP--- 165
TFA Y RTAFERPL SGVAYA RV +REQFERQ G I M +S P P
Sbjct: 2 TFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPG 61
Query: 166 ------IRD---EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLL 216
IR+ EYAPV+F Q+ HV S DM+SG EDR+NILRAR +GK VLT PF+LL
Sbjct: 62 DAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL 121
Query: 217 GSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILV 276
++ LGV+LT+ VYK +LP + ERI+A GY+GG FD+++LVE LL QLA ++I+V
Sbjct: 122 -NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMV 180
Query: 277 NVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTT 336
NVYD TN S P+ MYGD G + H S L+FGD RKH+M CR+ +K PW A+T+
Sbjct: 181 NVYDTTNES-PISMYGDDTGSG---MCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITS 236
Query: 337 AFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTP 396
+F VI LL G+I I KVEDDFHKM ELK RAE ADVAKSQFLATVSHEIRTP
Sbjct: 237 SFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTP 296
Query: 397 MNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFN 456
MNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE V F+
Sbjct: 297 MNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFD 356
Query: 457 LRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
LR + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNLVGNS+KFTERG
Sbjct: 357 LRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERG 416
Query: 517 HIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
HI++ VH+ E M + + +G NTLSG A+ R SW+ +
Sbjct: 417 HIYLTVHVVEEVMSCLEVE---------------TGIQNTNTLSGYPVANRRCSWESIR- 460
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L + E S S + S+ ++L++ VEDTG+GIP AQ RVF PFMQ S +R
Sbjct: 461 LFNRELHSSEKSFAPI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIAR 515
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQSKSE 694
+GGTGIGLSISKCLV LM+G+I F S+P VGSTF+FTAV CK DIK S+
Sbjct: 516 IHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKG---NDIKSSE-- 570
Query: 695 DLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQ 754
FKG+ A+VVD +PVRA VT+YHL RLG+ ++++ + S +G +++
Sbjct: 571 -----FKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK---- 621
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
++L++K+ W+ ++S L++ N PKL LL ++ S + +
Sbjct: 622 --LVLIDKETWL--KESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNL 677
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
VIMKPLRASM+ L++ L +K GV G+S LL K+I+VVDDN VN V
Sbjct: 678 NVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIVNLKV 736
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AAGALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME N
Sbjct: 737 AAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLN 796
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
E++ G + + A PILAMTADVI AT +ECLK MDGYVSKPFE E LY E+
Sbjct: 797 ERIERGEAPPE-CASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEV 855
Query: 995 AKFFKS 1000
A+FF++
Sbjct: 856 ARFFQN 861
>gi|198387188|gb|ACH87040.1| hybrid type histidine kinase isoform b [Oryza sativa Indica Group]
Length = 865
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/906 (51%), Positives = 594/906 (65%), Gaps = 68/906 (7%)
Query: 116 TFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSE---------PSP- 165
TFA Y RTAFERPL SGVAYA RV +RE FERQ G TI M S P P
Sbjct: 2 TFARYAVRTAFERPLTSGVAYAVRVTHGEREHFERQQGWTIKKMYSSSNKKQSSSGPGPG 61
Query: 166 ------IRD---EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLL 216
IR+ EYAPV+F Q+ HV S DM+SG EDR+NIL +R +GK VLT PF+LL
Sbjct: 62 DAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRKNILYSRKSGKGVLTAPFKLL 121
Query: 217 GSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILV 276
++ LGV+ T+ VYKS+LP + ERI+A GY+GG FD+++LVE LL QLA ++I+V
Sbjct: 122 -NNRLGVISTYTVYKSELPANARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMV 180
Query: 277 NVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTT 336
NVYD TN +P+ MYGD G + H S L+FGD RKH+M CR+ +K PW A+T+
Sbjct: 181 NVYDTTN-ENPISMYGDDTGSG---MCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITS 236
Query: 337 AFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTP 396
+F VI LL G+I I KVEDDFHKM ELK RAE ADVAKSQFLATVSHEIRTP
Sbjct: 237 SFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTP 296
Query: 397 MNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFN 456
MNG+LGML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELE V F+
Sbjct: 297 MNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFD 356
Query: 457 LRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
LR + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNLVGNS+KFTERG
Sbjct: 357 LRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERG 416
Query: 517 HIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
HI++ VH+ E M + + +G NTLSG A+ R SW+ +
Sbjct: 417 HIYLTVHVVEEVMSCLEVE---------------TGIQNTNTLSGYPVANRRCSWESIR- 460
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
L + E S S + S+ ++L++ VEDTG+GIP AQ RVF PFMQ S +R
Sbjct: 461 LFNRELHSSEKSFAPI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIAR 515
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQSKSE 694
+GGTGIGLSISKCLV LM+G+I F S+P VGSTF+FTAV CK DIK S+
Sbjct: 516 IHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKG---NDIKSSE-- 570
Query: 695 DLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQ 754
FKG+ A+VVD +PVRA VT+YHL RLG+ ++++ + S +G +++
Sbjct: 571 -----FKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK---- 621
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
++L++K+ W+ ++S L++ N PKL LL ++ S + +
Sbjct: 622 --LVLIDKETWL--KESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNL 677
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
VIMKPLRASM+ L++ L +K GV G+S LL K+I+VVDDN VN V
Sbjct: 678 NVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIVNLKV 736
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
AGALKK+GA V CA S K A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME N
Sbjct: 737 -AGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLN 795
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
E++ G + + A PILAMTADVI AT +ECLK MDGYVSKPFE E LY E+
Sbjct: 796 ERIERGEAPPE-CASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEV 854
Query: 995 AKFFKS 1000
A+FF++
Sbjct: 855 ARFFQN 860
>gi|27311849|gb|AAO00890.1| histidine kinase-like protein [Arabidopsis thaliana]
gi|30725488|gb|AAP37766.1| At5g35750 [Arabidopsis thaliana]
Length = 652
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/684 (53%), Positives = 456/684 (66%), Gaps = 37/684 (5%)
Query: 319 MICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAA 378
M CR+ K PWTA+T + + VI LVGYILY A I VE+D KM+ELK RAEAA
Sbjct: 1 MHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAA 60
Query: 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVL 438
D+AKSQFLATVSHEIRTPMNG+LGML +L+DTDL + Q DYAQTA GK L +LINEVL
Sbjct: 61 DIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVL 120
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D+AKIE+ +LELE V F++R ILD+V SL S K+ KGIELAV+VS +VP+ V+GDP RF
Sbjct: 121 DQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRF 180
Query: 499 RQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFN 557
RQIITNLVGNS+KFT ERGHIF+ VHLA+ +D +L G SG
Sbjct: 181 RQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIED-AVLKQRLALGCSESG----E 235
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
T+SG A + SW FK E + S+ + L+V VEDTG+GIP+
Sbjct: 236 TVSGFPAVNAWGSWKNFKTCYSTE--------------SQNSDQIKLLVTVEDTGVGIPV 281
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
AQ R+F PFMQADSSTSR YGGTGIGLSISK LVELM+G++ FVS P +GSTFSFT VF
Sbjct: 282 DAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVF 341
Query: 678 GKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK 736
GK + I + + DL F GL+A+V+D + +RA VT+Y L RLGI + SS++
Sbjct: 342 GKAETNT--SITKLERFDLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLR 399
Query: 737 DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLA 796
A + + L + +IL++KD W E S + L + ++PK+ LLA
Sbjct: 400 MACTCCISKLENLA------MILIDKDAWNKEEFSVLDE--LFTRSKVTFTRVPKIFLLA 451
Query: 797 TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQG- 855
T+ + E + K+ G D V++KPLR S++ CLQ+ L KRQ PN + G
Sbjct: 452 TSATLTERSEMKSTGLIDEVVIKPLRMSVLICCLQETLVNGKKRQ-----PNRQRRNLGH 506
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
LLR K+ILVVDDN VNR VA GALKK+GA V C S KAAL L+ PH FDACFMD+QMP
Sbjct: 507 LLREKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMP 566
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
EMDGFEATRR+R++E + N+++ +G S + K H+PILAMTADVI AT +EC+KC
Sbjct: 567 EMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKC 626
Query: 976 GMDGYVSKPFEEENLYRELAKFFK 999
GMDGYVSKPFEEE LY +A+FF+
Sbjct: 627 GMDGYVSKPFEEEVLYTAVARFFE 650
>gi|413938769|gb|AFW73320.1| putative histidine kinase family protein [Zea mays]
Length = 505
Score = 627 bits (1616), Expect = e-176, Method: Compositional matrix adjust.
Identities = 307/503 (61%), Positives = 384/503 (76%), Gaps = 2/503 (0%)
Query: 21 MGTKIGYTFIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRAR 80
MG K Y ++ R W A W++ S ++ + ++ R +E L SMC++RAR
Sbjct: 1 MGGK--YRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERAR 58
Query: 81 MLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRV 140
MLQ+QF VTVNHVHA+ IL+STF++ K+P A+DQDTFA+YT RT+FERPLL+GVA+A RV
Sbjct: 59 MLQEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRV 118
Query: 141 VDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILR 200
+RE FE Q G + TM+ EP+P + EYAPV+F Q+ +S++ +DMMSGEEDRENI R
Sbjct: 119 FHHEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFR 178
Query: 201 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
AR TGKAVLT PFRLLGS+HLGVVLTF VY+ LP ++VE+R++AT GY+GG FDVESL
Sbjct: 179 ARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESL 238
Query: 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMI 320
VENLL +LAGNQ I+VNVYD+TNASD +++YG + D + LH S LDFGD FRKH+M
Sbjct: 239 VENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMR 298
Query: 321 CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV 380
CRY QK PW+A+T FVI +L+GY + A KV +D KM+ELK +AEAADV
Sbjct: 299 CRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADV 358
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLATVSHEIRTPMNG+LGML +LL TDL+ TQ+DYAQTAQ+CG+ALI LIN+VLDR
Sbjct: 359 AKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDR 418
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
AKIEA KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D VP+ V+GDP RFRQ
Sbjct: 419 AKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQ 478
Query: 501 IITNLVGNSVKFTERGHIFVKVH 523
I+TNLVGN+VK + + V H
Sbjct: 479 ILTNLVGNAVKVSSQFWYLVSSH 501
>gi|297610356|ref|NP_001064436.2| Os10g0362300 [Oryza sativa Japonica Group]
gi|255679337|dbj|BAF26350.2| Os10g0362300 [Oryza sativa Japonica Group]
Length = 598
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 314/604 (51%), Positives = 405/604 (67%), Gaps = 29/604 (4%)
Query: 402 GMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461
GML +L+DT+L +TQRD+ TAQ GK+LI LINEVLD AKIE+ K+ELEAV F++R IL
Sbjct: 12 GMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDIL 71
Query: 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK 521
D+V+SLFSEKS KGIELAV VSD+VP+ ++GDP RFRQIITNLVGNS+KFTE+GHIF++
Sbjct: 72 DNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIR 131
Query: 522 VHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAE 581
VHL E K +A D+T E T +NTLSGLE A+ R + + F+ D
Sbjct: 132 VHLIEEVKRKMEALDDTSPEN-IEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-- 188
Query: 582 GFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGT 641
S+ + V L+V VEDTGIGI AQ R+F PFMQAD STSR YGGT
Sbjct: 189 -------------SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGT 235
Query: 642 GIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFK 701
GIGLSI+K LVELM G+I FVS+P V STFSFTA+F + ++ DIK+ E PP F+
Sbjct: 236 GIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFKENRKDP-GDIKRYCPEPTPPDFQ 294
Query: 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE 761
G++A+VVD + RA VT YHL RLGI ++++ + A S SS K +++LV+
Sbjct: 295 GMRALVVDGRCARAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSV-KSSLNMVLVD 353
Query: 762 KDCWISGEDSG--FNAQLLDWKPNGHVFK---LPKLILLATNISKDECDKAKAGGFADTV 816
K+ W GEDSG F L+D + G + +PK LLA +I+ + D + G++++
Sbjct: 354 KEAW--GEDSGLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNS- 410
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAA 876
I KPLR S +AACL + L GR + S + +L GK ILVVDDN VNR+VAA
Sbjct: 411 IRKPLRLSTVAACLSKALGVG---LTGRRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAA 467
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
GALKK+GA V C S K A+ +LQ PH FDACFMD+QMPEMDGFEATR +R +ESK N+
Sbjct: 468 GALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDT 527
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ G S + + H+PILAMTADVI ATF+ C++CGMDGYV+KPFEE+ LY +A
Sbjct: 528 IQAGEVSSEIYGNKAHWHVPILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAVAH 587
Query: 997 FFKS 1000
F ++
Sbjct: 588 FLEA 591
>gi|413951478|gb|AFW84127.1| putative histidine kinase family protein [Zea mays]
Length = 564
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/599 (49%), Positives = 388/599 (64%), Gaps = 39/599 (6%)
Query: 403 MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILD 462
ML +L+DTDL +TQ+DY +TAQ GKAL++LINEVLD+AKIE+ KLELEAV F+LR + D
Sbjct: 1 MLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRTVCD 60
Query: 463 DVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
D+LSLF K++ KG+ELAVFVSD+VP+ ++GDPGR RQIITNLVGNS+KFTE+GHI++ V
Sbjct: 61 DILSLFCGKAQEKGLELAVFVSDQVPQALIGDPGRIRQIITNLVGNSIKFTEKGHIYLTV 120
Query: 523 HLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEG 582
H+ E M + + +GT NTLSG A+ + SW+ F+
Sbjct: 121 HVVEEIMNCLEVE---------------TGTQSANTLSGYPVANRKRSWENFR------V 159
Query: 583 FQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
F + M + S+ ++L++ VEDTG+GIP AQ RVF PFMQ S +R +GGTG
Sbjct: 160 FSRELNSSEMPFAPIASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTG 219
Query: 643 IGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG 702
IGLSISKCLV LMRG+I F S+PQVGSTF+FTAV + S++E+ FKG
Sbjct: 220 IGLSISKCLVGLMRGEIGFASKPQVGSTFTFTAVLTRAHS--------SRNENKSSEFKG 271
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762
+ A+VVD +PVRA VT+YHL RLG+ ++++ + S G ++ ++L++K
Sbjct: 272 INALVVDHRPVRAKVTRYHLQRLGVQTELTTDLDQYISKINCGSQIAK------LVLIDK 325
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
+ W+ ++S L+ N KL LL S + + F VIMKPLR
Sbjct: 326 ETWL--KESHSMPLLVTKLRNKDQPDSTKLFLLENPKSTAKSNSHIFREFNLNVIMKPLR 383
Query: 823 ASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
ASM+ L + L +K GV G+S LL K+ILVVDDN VN VAAGALKK+
Sbjct: 384 ASMLQVSLHRALGGIDKLHCRNGVL-GNSTLGSLLHKKRILVVDDNIVNLKVAAGALKKY 442
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
GA V CA S K A+ +L+ PH FDACFMDIQMPEMDGFEAT+RIR ME NEQ+ G +
Sbjct: 443 GAEVTCADSGKKAITQLKPPHSFDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEA 502
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ R + PILAMTADVI AT ++CLK MDGYVSKPFE E LYRE+A+FF+++
Sbjct: 503 PPECAGLR-QWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARFFQNQ 560
>gi|222623641|gb|EEE57773.1| hypothetical protein OsJ_08314 [Oryza sativa Japonica Group]
Length = 891
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/533 (54%), Positives = 363/533 (68%), Gaps = 36/533 (6%)
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
+LAVFV D VP+ V+GDP R+RQI+TNLVGN+VKFTERGH+FV+V LAE + V+ +
Sbjct: 373 QLAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEAN---- 428
Query: 538 TLLNG---GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMA 594
+LNG G + V + G FNTLSG +AAD RN+WD FK L+ + + +
Sbjct: 429 QVLNGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSY 488
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
N + VTLM+ +EDTG+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCL EL
Sbjct: 489 QND-CDCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 547
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVR 714
M GQISF SRP VGSTF+F+AV + + D K+S SE LP FKG+KA++VD +PVR
Sbjct: 548 MGGQISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAILVDGRPVR 607
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASST--AKNGLTSSEDKFQPDIILVEKDCWISGEDSG 772
AVT+YHLNRLGI+VK+ +++ T +NG+ S +K ++ +E D W D
Sbjct: 608 GAVTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLS--MLFIESDIWRPETDIL 665
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+L + K NG V +LPKL+LL T+ E DK + G D V+ KP+RAS IA+CLQQ
Sbjct: 666 LLNRLHELKNNGQVHELPKLVLLVTS----EADKDRYGSAFDIVMYKPIRASTIASCLQQ 721
Query: 833 VLST---ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+L E K R SF + LL GK IL+VDDN VN VAA ALKK+GA V C
Sbjct: 722 LLKVVMPERKDNQNR-----PSFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCV 776
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ-----MMNGGSSV 944
S K A+ LQ PHCFDACFMD+QMPEMDGFEATR+IRQME KANE+ +M G + V
Sbjct: 777 ESGKDAVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFV 836
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
E HLP+LAMTADVI AT++EC+K GMDGYVSKPF+EE LY+ +++
Sbjct: 837 -------ESHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 882
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/343 (61%), Positives = 256/343 (74%), Gaps = 15/343 (4%)
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
R +E L SMC++RARMLQ+QF VTVNHVHAL IL+STFH+ K PSA+DQDTFA+YT RT+
Sbjct: 40 RAEERLVSMCEERARMLQEQFGVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTS 99
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKS 185
FERPLL+GVAYA R+ +RE FE Q G + TMK + +P +DEYAPV+F Q+ +S++
Sbjct: 100 FERPLLNGVAYAQRIFHHEREMFENQQGWIMKTMKRQAAPPQDEYAPVIFSQDTVSYLAR 159
Query: 186 LDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIK 245
+DMMSGEEDRENILRARATGKAVLT PFRLLGS+HLGVVLTF VY+ L ++VEER++
Sbjct: 160 IDMMSGEEDRENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVE 219
Query: 246 ATAG---------------YIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIM 290
ATAG Y+GG FDVESLVENLL +LAGNQ I+VNVYD+TNAS+P+ M
Sbjct: 220 ATAGCLVVVVSSNQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAM 279
Query: 291 YGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYI 350
YG Q+ DG +SL H S LDFGD FR H+M CRY QK PW+A+T FVI +LVGYI
Sbjct: 280 YGPQSPDGKVSLFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYI 339
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEI 393
+ A KV +D KM+ELK +AEAADVAKSQ V ++
Sbjct: 340 ICAAWSRYDKVSEDCRKMEELKTQAEAADVAKSQLAVFVCDDV 382
>gi|63095199|gb|AAY32330.1| AHK1 [Phyllostachys praecox]
Length = 409
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/422 (63%), Positives = 324/422 (76%), Gaps = 24/422 (5%)
Query: 251 IGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDF 310
+GG FDVESLVENLL +LAGNQ I+VNVYD+TNA +P++MYG Q+ DG + LLH S LD
Sbjct: 1 LGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNALEPMVMYGPQSPDGKVLLLHVSMLDL 60
Query: 311 GDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQE 370
GD FR+H+M CRY QK PW+A+T FVI +LVGYI+ A KV +D KM+E
Sbjct: 61 GDPFRRHEMRCRYWQKPPMPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEE 120
Query: 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430
LK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +LL TDL+ TQ+D+AQTAQ+CG+AL
Sbjct: 121 LKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTLTQKDHAQTAQMCGRAL 180
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
I LIN+VLDRAKIEA KLELEAV F+LR+++DDV+SLFS KSR K IELAVFV D VPE
Sbjct: 181 ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPEV 240
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNG---GTEEG 547
V+GDP RFRQI+TNLVGN+VKFTERGH+FV+V LAE + V +D+ +LNG G +
Sbjct: 241 VIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNV----EDDQVLNGTLNGKDGK 296
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLI--------DAEGFQSNASIINMMASNGGS 599
+ + G NTLSG +AAD RNSW+ FK L+ + EG +SN + S
Sbjct: 297 IESTANGALNTLSGFQAADERNSWEYFKLLLSDKESLLDELEGEKSNQN---------DS 347
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ VTLM+ +EDTG+GIPL AQ+RVF PFMQADSSTSR+YGGTGIGLSISKCL ELM GQI
Sbjct: 348 DSVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 407
Query: 660 SF 661
SF
Sbjct: 408 SF 409
>gi|349587786|pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
gi|349587787|pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
gi|349587788|pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
gi|349587789|pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
gi|349587790|pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
gi|349587791|pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
gi|349587792|pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
gi|349587793|pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
gi|349587794|pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
gi|349587795|pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
gi|349587796|pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
gi|349587797|pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
gi|349587798|pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
gi|349587799|pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/270 (78%), Positives = 241/270 (89%), Gaps = 1/270 (0%)
Query: 59 MDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFA 118
MD+ NKIRR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFA
Sbjct: 1 MDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFA 60
Query: 119 EYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQ 177
EYT RTAFERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q
Sbjct: 61 EYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQ 120
Query: 178 EPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPR 237
+ +S+++SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP
Sbjct: 121 DSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPEN 180
Query: 238 STVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQD 297
TVEERI ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++
Sbjct: 181 PTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEE 240
Query: 298 GDMSLLHESELDFGDSFRKHKMICRYHQKA 327
D SL HES+LDFGD FRKHKMICRYHQKA
Sbjct: 241 ADRSLSHESKLDFGDPFRKHKMICRYHQKA 270
>gi|28916441|gb|AAO59549.1| histidine kinase [Oryza sativa Indica Group]
Length = 497
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 253/532 (47%), Positives = 333/532 (62%), Gaps = 43/532 (8%)
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNLVGNS+KFTERGHI++ VH+ E M
Sbjct: 2 KAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMS 61
Query: 531 KTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASII 590
+ + +G NTLSG A+ R SW+ + L + E S S
Sbjct: 62 CLEVE---------------TGIQNTNTLSGYPVANRRRSWESIR-LFNRELHSSEKSFA 105
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
+ S+ ++L++ VEDTG+GIP AQ RVF PFMQ S +R +GGTGIGLSISKC
Sbjct: 106 PI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKC 160
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
LV LM+G+I F S+P VGSTF+FTAV CK DIK S+ FKG+ A+VV
Sbjct: 161 LVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKG---NDIKSSE-------FKGINALVV 210
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D +PVRA VT+YHL RLG+ ++++ + S +G +++ ++L++K+ W+
Sbjct: 211 DHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK------LVLIDKETWL-- 262
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
++S L++ N PKL LL ++ S + + VIMKPLRASM+
Sbjct: 263 KESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQV 322
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
L++ L +K GV G+S LL K+I+VVDDN VN VAAGALKK+GA V C
Sbjct: 323 SLRRALGGVDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTC 381
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A S K A+ L+ PH FDACFMDIQMPEMDGFEATRRIR ME NE++ G + + A
Sbjct: 382 ADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPE-CA 440
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
PILAMTADVI AT +ECLK MDGYVSKPFE E LY E+A+FF++
Sbjct: 441 SIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 492
>gi|28916434|gb|AAO59548.1| histidine kinase [Oryza sativa Indica Group]
Length = 488
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/524 (47%), Positives = 326/524 (62%), Gaps = 43/524 (8%)
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
LAV+VSD+VP+ ++GDPGR RQIITNLVGNS+KFTERGHI++ VH+ E M + +
Sbjct: 1 LAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVE--- 57
Query: 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
+G NTLSG A+ R SW+ + L + E S S +
Sbjct: 58 ------------TGIQNTNTLSGYPVANRRRSWESIR-LFNRELHSSEKSFAPI-----A 99
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S+ ++L++ VEDTG+GIP AQ RVF PFMQ S +R +GGTGIGLSISKCLV LM+G+
Sbjct: 100 SDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGE 159
Query: 659 ISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
I F S+P VGSTF+FTAV CK DIK S+ FKG+ A+VVD +PVRA
Sbjct: 160 IGFASKPHVGSTFTFTAVLMRAHCKG---NDIKSSE-------FKGINALVVDHRPVRAK 209
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
VT+YHL RLG+ ++++ + S +G +++ ++L++K+ W+ ++S
Sbjct: 210 VTKYHLQRLGVKTELTAELNQFISKLNSGSLTAK------LVLIDKETWL--KESHCTPL 261
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
L++ N PKL LL ++ S + + VIMKPLRASM+ L++ L
Sbjct: 262 LVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGG 321
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+K GV G+S LL K+I+VVDDN VN VAAGALKK+GA V CA S K A+
Sbjct: 322 VDKVHCRNGVV-GNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAI 380
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
L+ PH FDACFMDIQMPEMDGFEATRRIR ME NE++ G + + A P
Sbjct: 381 TLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPE-CASIQRWRTP 439
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
ILAMTADVI AT +ECLK MDGYVSKPFE E LY E+A+FF++
Sbjct: 440 ILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 483
>gi|13129468|gb|AAK13126.1|AC083945_1 Histidine-kinase like protein [Oryza sativa Japonica Group]
Length = 627
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/520 (47%), Positives = 324/520 (62%), Gaps = 36/520 (6%)
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
+AV VSD+VP+ ++GDP RFRQIITNLVGNS+KFTE+GHIF++VHL E K +A D+T
Sbjct: 1 MAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDT 60
Query: 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
E T +NTLSGLE A+ R + + F+ D S+
Sbjct: 61 SPEN-IEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD---------------SSDA 104
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+ V L+V VEDTGIGI AQ R+F PFMQAD STSR YGGTGIGLSI+K LVELM G+
Sbjct: 105 IDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGE 164
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I FVS+P V STFSFTA+F + ++ DIK+ E PP F+G++A+VVD + RA VT
Sbjct: 165 IGFVSKPGVSSTFSFTAIFKENRKDP-GDIKRYCPEPTPPDFQGMRALVVDGRCARAEVT 223
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG--FNAQ 776
YHL RLGI ++++ + A S SS K +++LV+K+ W GEDSG F
Sbjct: 224 MYHLRRLGIQCDLAATSESALSALLESCNSSV-KSSLNMVLVDKEAW--GEDSGLAFFRC 280
Query: 777 LLDWKPNGHVFK---LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
L+D + G + +PK LLA +I+ + D + G++++ I KPLR S +AACL +
Sbjct: 281 LIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNS-IRKPLRLSTVAACLSKA 339
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
L GR + S + +L GK ILVVDDN VNR+VAAGALKK+GA V C S K
Sbjct: 340 LGVG---LTGRRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGK 396
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A+ +LQ PH FDACFMD+QMPEMDGFEATR +R +ESK N+ + G S + +
Sbjct: 397 EAISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHW 456
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
H+PILAMTADVI ATF+ PF + N+ ++
Sbjct: 457 HVPILAMTADVIQATFE-------GSSAKNPFGDNNIAKQ 489
>gi|168061325|ref|XP_001782640.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162665873|gb|EDQ52543.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1123
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 322/1042 (30%), Positives = 504/1042 (48%), Gaps = 139/1042 (13%)
Query: 44 WIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTF 103
W++ + I + +Y + K R +E CD +L+ + +N L++
Sbjct: 123 WVLA-SIIGVVLY---NSSLKSRNRE-FSLKCDNHKEILRSEVENNLNASFVALGLIAGV 177
Query: 104 HYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM---- 159
Y ++ + +T RT F RP + + Y RV+ +QR +FER++ TI T+
Sbjct: 178 PY------VNDSIWKNFTRRTLFLRPNVRTLVYCERVLASQRSEFERKYNATIVTILPNG 231
Query: 160 ---KSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLL 216
K P+ DEYAPV+F E + + D S E +++AR TG L+ P
Sbjct: 232 TRWKRGPA---DEYAPVVFQTEDVD-LYMYDAGSSPILDEALVKARDTGLFTLSPPSPRQ 287
Query: 217 GSHHLGVVLTFPVYKSKLPPRS--TVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAI 274
+ +G L + Y RS + R A GY+ D+ + +L + N+ +
Sbjct: 288 STFQMGAYLAY--YGPGKDSRSFLSAAARKSACVGYVATVLDIVEVFGAVLSRFIANEDM 345
Query: 275 -LVNVYDMTNASDP--------------LIMYGDQNQDGDMSLLHESELDFGDSFRKHKM 319
+V VY++ + P L ++ N+ + S + + + G + +
Sbjct: 346 DVVAVYNVDPNTTPHVSYNCSTTLKPCVLPLFDPANRSKEHSDVFVA-WEVGSQNFELRC 404
Query: 320 ICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVR----- 374
+ R + K + + L ++ L I+Y ++ +E D M+++ +
Sbjct: 405 LPRSNMKLLAFRSVVAWPLLLAMVVLFCAIIVYLVLKRMLVIEKDVSLMEKVNAKLTAAT 464
Query: 375 --AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIA 432
AEAA+ AKS FLATVSHEIRTPMNG++GM LL+ T+L++ QR+Y + AQ GKAL+A
Sbjct: 465 MAAEAAEKAKSSFLATVSHEIRTPMNGVIGMTNLLMGTELNAQQREYVKIAQASGKALLA 524
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
LIN+VLD +KIEA K+E+E+V ++R D++ S EK N +E+ + D VP ++
Sbjct: 525 LINDVLDLSKIEAGKMEVESVKLDIRNEFDEIFSFLDEKDSNNHLEMVALIHDAVPSCLM 584
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE-------------------------- 526
GDP R RQI+ NLV NS+KFT++G IF+ V + +
Sbjct: 585 GDPTRIRQILFNLVSNSMKFTKQGSIFICVRMLDSCHSDRLHPPPEVIYDLSRSKLFFLG 644
Query: 527 ---RTMV---KTDAKDETLLNGGTEEGVCRSGTGQFNTL-----------SGLEAADGRN 569
T V D T + G + +CR G+ + + + L + +
Sbjct: 645 SVNNTQVVPKSPSGSDTTGMVGSDRDTICRGGSTRLSEMHLVAPRLSMVPGPLSSREAVA 704
Query: 570 SWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQ 629
+W +++ E +SN VTL++ VEDTGI +PL R+F PF+Q
Sbjct: 705 AWRRWEPKRSVETTESNP--------------VTLVISVEDTGIDVPLHLHNRLFQPFLQ 750
Query: 630 ADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689
ADSS+SR YGGTG+GLSI K L LM+G ++ S P GS F T G+ + +
Sbjct: 751 ADSSSSREYGGTGVGLSICKKLAMLMKGDLTVSSNPGEGSVFELTVTLGRAPQPKCSNSS 810
Query: 690 Q--SKSEDLPP----GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
+ + PP +G + ++VD PVR +L RLG++V+ + + +
Sbjct: 811 GCCTTPDQRPPLESEKLRGFRVILVDTHPVRQEAYASYLRRLGVVVEETEDLDGTLELVR 870
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDSGFN---AQLLDWKPNGHVFKLPKLILLATNIS 800
SS + II+V + G D Q + +P LP + L T +
Sbjct: 871 RKENSSSAQ---AIIVV-----LQGVDRELTMEIGQRVRTEPGYET--LPIIALTCTPLP 920
Query: 801 KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK 860
D+ K G++ T I KPLR + +A L Q L + + PN LL GK
Sbjct: 921 ----DELKTAGYSST-IFKPLRHATVATILLQALGVRFQMSTKKVAPNPK-----LLTGK 970
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL--QSP-HCFDACFMDIQMPEM 917
++LVVDDN VNR VA L ++GATV A++ + Q P +D MDIQMPEM
Sbjct: 971 RLLVVDDNMVNRRVATSMLARYGATVVKVNGGMEAVNAVRNQKPDEAYDLVLMDIQMPEM 1030
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG+EATR+IR++E + EQ + +S + K HLPI+A+TADV++ T + C GM
Sbjct: 1031 DGYEATRQIRKLEIENCEQCADSEAS-EELFKCFHHHLPIVAVTADVMNGTHELCFDAGM 1089
Query: 978 DGYVSKPFEEENLYRELAKFFK 999
D Y+SKP +++ LY L F +
Sbjct: 1090 DDYISKPLDQKQLYSLLEHFVQ 1111
>gi|358347444|ref|XP_003637767.1| Histidine kinase [Medicago truncatula]
gi|355503702|gb|AES84905.1| Histidine kinase [Medicago truncatula]
Length = 397
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/347 (61%), Positives = 244/347 (70%), Gaps = 77/347 (22%)
Query: 156 ITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRL 215
I TM+SE SP+RDEYAPV+F EDRENI+RARATGKAV+T PFRL
Sbjct: 128 IKTMESEASPVRDEYAPVIF-----------------EDRENIMRARATGKAVMTSPFRL 170
Query: 216 LGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAIL 275
LGSHHLGVVLTFPVYKSK PP T EE IKATAG +
Sbjct: 171 LGSHHLGVVLTFPVYKSKFPPNPTTEELIKATAG-------------------------I 205
Query: 276 VNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALT 335
NVYD+TN++DPLIMYG+Q ++GD+SL+HES+LDFGD +RKH+MICRYHQKA WTAL+
Sbjct: 206 SNVYDVTNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALS 265
Query: 336 TAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRT 395
TA FVI LL+GYILYGA +IVKVEDDFH+MQELKVRAEAADVAKSQFLATVSHEIRT
Sbjct: 266 TAILFFVILLLIGYILYGAGNYIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRT 325
Query: 396 PMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455
PMNGIL VLDRAKIEA KLELEAV F
Sbjct: 326 PMNGIL-----------------------------------VLDRAKIEAGKLELEAVPF 350
Query: 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
+LR+ILDDVLSLFSEKSR+KG+ELAVFVSDKVP+ V+GDPG+ +I
Sbjct: 351 DLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGKDNIVI 397
>gi|168028033|ref|XP_001766533.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
gi|162682178|gb|EDQ68598.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
Length = 1098
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 320/948 (33%), Positives = 483/948 (50%), Gaps = 100/948 (10%)
Query: 112 LDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHG--MTITTMKSEPSPIR-- 167
+DQDT+ +T +T F RP + + Y RV+ Q++ E ++ M I K+ +
Sbjct: 153 VDQDTWMAFTEQTVFLRPHVKSLVYCLRVLPQQKQAVEMKYNKTMYINVNKTIVTNYAKA 212
Query: 168 DEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTF 227
+EY PV F Q + LD+ R ++ +AR +G L+ P+ G L + +F
Sbjct: 213 EEYTPV-FLQSANISMFMLDIFGYPIFRSSLTQARDSGNFSLSAPYVNEGKE-LWRMGSF 270
Query: 228 PVYKSKLPPRS--TVEERIKATAGYIGGPFDVESLVENL--LGQLAG-----------NQ 272
Y ++ P + TVE R + GY+ V+ + LG+ N
Sbjct: 271 LPYYGEVDPDTLKTVEARRASCVGYVVTVLSVQERSYEVYPLGRFKDPDLDISATAKVNP 330
Query: 273 AILVNVY-DMTNASDP--LIMYGDQNQDGDM----------SLLHESELDFGDSFRKHKM 319
++ +N Y + + ++P + YG+ + + SL E + + + R H +
Sbjct: 331 SLGLNAYYNCSVDANPCEVRFYGNHLKSKGLEAVGVPFSYGSLDIELQCWYNHNIRLHVL 390
Query: 320 ICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAAD 379
+ + P L F V LV + A I + K E +++ K++AEAAD
Sbjct: 391 ----REMIAWPLLMLAMVVFCTVAVYLVLKKMSAAEIDVDKREKIHAQLRAAKLKAEAAD 446
Query: 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLD 439
AKS FLATVSHEIRTPMNG++GM LL+ TDLS Q +Y + AQ G AL+ALI++VLD
Sbjct: 447 TAKSSFLATVSHEIRTPMNGVIGMTNLLMGTDLSPQQLEYVKIAQASGNALVALISDVLD 506
Query: 440 RAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFR 499
+KIEA ++E+E V F++R LD++LSLF +K K +E++ V D VP+++ GDPGR R
Sbjct: 507 LSKIEAGRMEIETVPFDIREELDNILSLFEDKVYQKKLEISALVHDTVPQWLYGDPGRLR 566
Query: 500 QIITNLVGNSVKFTERGHIFVKVHLAERTMVKT-DAKDETLL---------NGGTEEGVC 549
Q++ NLVGN++KFT+ G+IF+ V L + T + +E L N TE
Sbjct: 567 QVLINLVGNAIKFTKHGNIFLCVRLVDPQFFATVSSSNEQFLDLIDTRHRHNPETE---- 622
Query: 550 RSGTGQFNT-LSGLEAADGRNSWDKFKH-------LIDAEGFQSNASIINMMASNGGS-- 599
S G NT L G+ A R++ + +H L G S ++ + + S
Sbjct: 623 -SADGSHNTSLQGVMAV--RSNLFRARHPKMAPPRLSMKPGPLSTSACVAEWRNWKPSGS 679
Query: 600 ---EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
++V ++ +ED+GIGIP Q R+F PF+QADSSTSR YGGTGIGLSI + LV L R
Sbjct: 680 LEFDEVACVISIEDSGIGIPKFMQSRLFEPFVQADSSTSREYGGTGIGLSICQKLVRLTR 739
Query: 657 GQISFVSRPQVGSTFSFTAVF------GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
G I+ S P GS F F+ V G ++ F +K++ S+ +G++ ++VD
Sbjct: 740 GDITVESEPGEGSVFKFSLVLPTSGQRGDLRKLAF-TMKRTPSDLEDERIRGIRVLLVDA 798
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE-DKFQPDIILVEKDCWISGE 769
PVR V +L R+G +++ + + S A LT E FQ I+ ++ G
Sbjct: 799 NPVRQEVAATYLRRVGALIEYA----EDGSIALELLTRDEGPPFQAVIVDLQ------GM 848
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
D QL+ V K+P L L S+ + + KAG ++ KPLR + + +
Sbjct: 849 DHMTAIQLVQRLKESVVNKIPVLALSIPPESELQSELQKAG--YQHIVHKPLRCNALISG 906
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
L Q L E + + N +L GK++LVVDDN VNR VA+ L++ GATV
Sbjct: 907 LLQTLGIEVTNPSRKQNANAE-----MLAGKRLLVVDDNMVNRRVASSILQRNGATVVTV 961
Query: 890 ASAKAALD---KLQSPHCFDACFMDIQMPEMDGFEATRRIRQME-SKANEQMMNGGSSVD 945
A++ K + FD MDIQMPEMDG+EATR IR+ E K ++ D
Sbjct: 962 NGGIQAINIVKKQDADKQFDMILMDIQMPEMDGYEATRLIREWEVGKCHQCQALERIKYD 1021
Query: 946 GTAKRDELH--LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
++ H +PI+A+TADV+ T + C GMD Y+ K F LY
Sbjct: 1022 YQELKECPHHRIPIVAVTADVMKGTHEMCFSAGMDDYIPK-FCASRLY 1068
>gi|168005127|ref|XP_001755262.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
gi|162693390|gb|EDQ79742.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
Length = 1218
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 324/1079 (30%), Positives = 511/1079 (47%), Gaps = 137/1079 (12%)
Query: 18 NEQMGTKIGYTFIQSNRAWLP------KALVLWIMGMAFISMSI-----YRGMDEENKI- 65
E MG+++ + I R WL L W M + I + + +N +
Sbjct: 130 QESMGSEMESSLITRPRMWLLGRWCWLNPLRCWWMRILCILCACTLVIVVGVVVYKNGLS 189
Query: 66 RRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTA 125
+++ + C+ R + + + + + + LV++ +D T+ +T +T
Sbjct: 190 NKRQEIQLKCENRKEVFKSEVDNNLGASFVILGLVTSV------PDVDPQTWLAFTDQTL 243
Query: 126 FERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSE---PSPIRDEYAPVMFYQEPMSH 182
F RP + +AY RV+ QR+ E+++ T+ T ++ P EYAPV+ +S
Sbjct: 244 FLRPHVRSLAYCLRVLPEQRQAVEKKYNATMYTYQNRIKLPRKPDVEYAPVILESAGVSS 303
Query: 183 VKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEE 242
+D + +I++AR TG L+ P+ G +G L P Y P + E
Sbjct: 304 YM-MDTFGYPILKSSIIQARDTGSFSLSAPYLQSGLWRMGSFL--PNY-GDFDPLTLKNE 359
Query: 243 RIKAT--AGYIGGPFDVESL---------------VENL---------LGQLAG-NQAIL 275
++ GY+ +VE + V NL + +A + A+
Sbjct: 360 AVRRARCVGYVATVLNVEEVFGSVVSSHFMTCSHEVHNLDRFRDADLYISAIAKVDSALD 419
Query: 276 VN-VYDMTNASDP--LIMYGDQNQDGDMSLLHES----------ELDFGDSFRKHKMICR 322
+N Y+ + ++P + YG++ + + + E + + R H +
Sbjct: 420 LNSYYNCSANTNPCEVRFYGNRTRSKSVEAVSVPFTYGTQYIVLECWYNYNIRLHVL--- 476
Query: 323 YHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAK 382
+ + P L F V LV + A + E +++ KV+AEAAD AK
Sbjct: 477 -REMIAWPLLMLAVVVFCTVAVYLVLKRMSAAEKDAYQREKIHAQLRAAKVKAEAADTAK 535
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S FLATVSHEIRTPMNG++GM LL+ TDL+ Q +Y + AQ G AL+ALI++VLD +K
Sbjct: 536 SSFLATVSHEIRTPMNGVIGMTNLLMGTDLTPQQLEYVKIAQASGNALVALISDVLDLSK 595
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
IEA ++E+E V F++R LD++LSLF EK K +E++ V D VP ++ GDPGR RQ++
Sbjct: 596 IEAGRMEIETVPFDIREELDNILSLFEEKVHQKKLEISALVHDSVPRWLYGDPGRLRQVL 655
Query: 503 TNLVGNSVKFTERGHIFVKVHLAERTMVKT-------------DAKDETLLNGGTEEGVC 549
NLVGN++KFT++G IF+ V L + +T D + + +G
Sbjct: 656 INLVGNAIKFTKQGSIFLCVRLVDPYFYETVSPPSSQQFLDLVDTRRRRIPEAELPDG-- 713
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAE-----GFQSNASII----NMMASNG-GS 599
+L G+ A + H+ G S ++ + N G
Sbjct: 714 ----NHDASLKGVIAVRSNLFRPRHPHMAPPRLSMKSGPSSTSACVAEWRNWKPIGGLDF 769
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
++V ++ +ED+GIGIP Q R+F PF+QADSSTSR YGGTGIGLSI + LV G I
Sbjct: 770 DEVICVISIEDSGIGIPKFMQNRLFEPFVQADSSTSREYGGTGIGLSICQKLVRFTGGDI 829
Query: 660 SFVSRPQVGSTFSFTAVF------GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV 713
S P GS F F+ V G ++ F +K+S S +G++ ++VD PV
Sbjct: 830 VVESEPGEGSVFKFSLVLPTSGQRGDLQKLAFA-MKRSPSGLGDERIRGIRVLLVDANPV 888
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
R V +L R+G +++ + + A T +NG FQ I+ ++ G D
Sbjct: 889 RQEVAATYLRRVGALIEYADDVDTALELLTRENG-----PPFQAVIVDLQ------GMDH 937
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKD---ECDKAKAGGFADTVIMKPLRASMIAA 828
+ QL+ P +LA +I D + + +AG ++ KPLR + + +
Sbjct: 938 KSSIQLVQRLKVSTAKTFP---VLALSIPPDIALQTELHEAG--YQHIVHKPLRCTTLIS 992
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA---T 885
L Q L + + + N +L GK +LVVDDN VN VA+ L+++GA T
Sbjct: 993 GLLQTLGMQVTNLSRKQNANAE-----MLTGKCLLVVDDNMVNSTVASSMLQRYGATVVT 1047
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM--MNGGSS 943
V A A+ + +S FD MDIQMPEMDG+EATR IR+ E EQ +
Sbjct: 1048 VNGGNQAIIAVKQQESDKQFDMILMDIQMPEMDGYEATRLIRKWEVDKCEQCRALEKIEY 1107
Query: 944 VDGTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
G K H +PI+A+TADV+ T + C GMD Y+ KP ++ L L +F + +
Sbjct: 1108 DYGEPKECPHHRIPIVAVTADVMKGTHEMCFSAGMDDYIPKPLDQRQLQLLLERFLEHR 1166
>gi|168047701|ref|XP_001776308.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162672403|gb|EDQ58941.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1148
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 334/1006 (33%), Positives = 479/1006 (47%), Gaps = 101/1006 (10%)
Query: 34 RAWLPKALVL---WIMGM---AFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFN 87
R W + L + W++ A + R M++E +++ C R +L+ +
Sbjct: 83 RHWTARVLFIALGWMLACGVGALLWKDALRSMEQEFRLK--------CVNRKEVLKSEVE 134
Query: 88 VTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQ 147
+N A+ L ++ L+ + + Y RT F RP ++ + Y RV+ ++R
Sbjct: 135 NNLNASFAIVGLTASL------PNLNNEIWMTYARRTLFLRPYVTRLLYVERVIASERAA 188
Query: 148 FERQHGMTITTMKSEPSPIR-----DEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRAR 202
FER+ +I + + + IR EY+P++F E H +D + R I AR
Sbjct: 189 FERKWNSSILYVTPQNTVIRRPDNDTEYSPIVFETED-EHYLFVDSGAYPRYRSAIDAAR 247
Query: 203 ATGKAVLTRPF--RLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
TG L+ P R S +G L + L S+V ER +A GY+G +V L
Sbjct: 248 DTGLFTLS-PVTPRAKNSWQMGAYLAYYGRGRDLTNFSSVAERRQACKGYVGTVMNVTEL 306
Query: 261 VENLLGQLAGNQAI-------------LVNVYDMT-NASDPLIMYGDQNQDGDMSLLHES 306
+L Q + + L + Y+ + +ASD ++ D + +
Sbjct: 307 FHRVLFQFTDDVDMDVVAVFVVNPMSGLYSYYNCSASASDCTVVLFDPARRAHEVSKAVA 366
Query: 307 ELDFGD------SFRKHKMICRYHQKASTPWTALTT--AFFLFVIGLLVGYILYGAAIHI 358
D+G F K + +A W L + F F+I LV + +
Sbjct: 367 LWDYGTQSFSVRCFPKQNLTL-LALRAIIAWPLLMSLVVIFCFIIVCLVLKRMQAIEKDV 425
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
+E ++ KV AEAAD AKS FLATVSHEIRTPMNG++GM LL+ TDL+ Q +
Sbjct: 426 AVMEKMDEDLKVAKVAAEAADKAKSNFLATVSHEIRTPMNGVIGMTNLLMGTDLTDQQLE 485
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
Y + AQ G ALIALIN+VLD +KIEA ++ELEAV FN+R +D V LF E + K +E
Sbjct: 486 YVKIAQASGNALIALINDVLDLSKIEAGRMELEAVPFNIRKEVDCVFHLFDETVQQKKLE 545
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
+++ V + VP V+GDPGRFRQI+ NL+GN++KFT+ G I V V + + + + D T
Sbjct: 546 MSMLVHNTVPTCVIGDPGRFRQILGNLIGNALKFTKEGSILVCVRVMDPN--QGSSSDFT 603
Query: 539 LLNGGTEEGVCRSGTGQFN-TLSGLEAADGR---NSWDKFKHLIDAEGFQSNASIINMMA 594
+N S G TLS +E R S + F S ++ +
Sbjct: 604 AINVDQNSPDTHSSQGLITETLSEVELEGLRLRGGSTAPRLSIQPGTEFNSREAVESWRK 663
Query: 595 SNGGSEDV--------TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
N + + T++ VEDTGIGIP ++R+F PF QA+SSTSR +GGTGIGLS
Sbjct: 664 WNLKTSALNCKPPSHFTIIASVEDTGIGIPQHLEKRLFQPFSQANSSTSREHGGTGIGLS 723
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSK--SEDLPPGFK--- 701
I + LV+LM G+I+ S VGS F F F K F D + K P G K
Sbjct: 724 ICEKLVKLMNGEITVTSNVGVGSVFEF---FLPVK---FHDALEGKPCCSKFPAGDKRLS 777
Query: 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE 761
G+ V+VD VR VT +L L I V + ++ + TS + ILV+
Sbjct: 778 GMHVVLVDNNLVRQEVTANYLQCLDIYVDLVEDMESTLELLRIKGTSLQ------AILVD 831
Query: 762 KDCWISGEDSGFNAQLLDWKPNGHVFK-LPKLILLATNISKDECDKAKAGGFADTVIMKP 820
+ G A L N FK LP L L E + AG ++ KP
Sbjct: 832 ----LEGLSLASIADLTSTVRNMPSFKALPVLGLSLALPPLIEKELRDAG--VSYMVKKP 885
Query: 821 LRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALK 880
LR S +A L + ++ R V S LL K+ILVVDDN VNR VA LK
Sbjct: 886 LRHSSLACVLLEAMNLTPTPATKRAVKVDDS---KLLSDKRILVVDDNMVNRRVATSMLK 942
Query: 881 KFGATVECAASAKAALDKLQS---PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
K+GA V A+D +++ D MDIQMPEMDG+EATRRIR E
Sbjct: 943 KYGAIVSSVNGGAEAVDAVKNRKEDEKLDLIVMDIQMPEMDGWEATRRIRNWE--VENCF 1000
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
+ ++ LPI+A+TADV+ T EC+ GMD Y++K
Sbjct: 1001 ICRTKNISWCRHH---RLPIVAVTADVLKGTHTECINSGMDDYLTK 1043
>gi|168024653|ref|XP_001764850.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683886|gb|EDQ70292.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1114
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 307/958 (32%), Positives = 459/958 (47%), Gaps = 104/958 (10%)
Query: 112 LDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKS---EPSPIRD 168
LD + ++T +T F RP + + Y RV++ R FE++ TI + P
Sbjct: 163 LDDTVWRKFTHQTLFLRPNVKRLLYMERVLNKDRAAFEKKWNGTIGYLVGNVVHPRGNDS 222
Query: 169 EYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFP 228
EY+P++ + + H +D I AR TG L S +G L +
Sbjct: 223 EYSPIIHEKSDLQHAL-VDPAHYPVFASAIHAARDTGLFTLWLATGDPSSWQMGAYLAYY 281
Query: 229 VYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ-------------LAGNQAIL 275
+ +T+EER A GY+G +V + LL + L QA L
Sbjct: 282 GPGKEGSSFATIEERRAACLGYVGTVLNVSEIFARLLSRFIDDVDMDVVFVYLVDPQATL 341
Query: 276 VNVYDMTNASDPLI--MYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTA 333
Y+ +N + P + +Y + D + D+G + + + +++ K
Sbjct: 342 F--YNCSNTAVPCVVALYDPARRSRDGKPVASVNWDYGTLMFQLRCLPKHNSKLIALRNI 399
Query: 334 LTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV-------RAEAADVAKSQFL 386
+ + V+ L I++ + +E D ++++ V AEAAD AKS FL
Sbjct: 400 IAWPLLMSVVVLFFSIIVFLVLRRMQAIEKDVSIIEKMNVDLKAAKVAAEAADKAKSSFL 459
Query: 387 ATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEAR 446
ATVSHEIRTPMNG++GM LL+ TDLSS Q DY + AQ G ALIALIN+VLD +KIEA
Sbjct: 460 ATVSHEIRTPMNGVIGMTNLLMGTDLSSQQLDYVKVAQSSGNALIALINDVLDLSKIEAG 519
Query: 447 KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLV 506
K+ELE+V FNLR +D V +LF EK + K +E+ + V + VP V GDPGRFRQI+ NLV
Sbjct: 520 KMELESVSFNLRKEVDSVFTLFDEKLQQKKLEVFMLVHEAVPTCVTGDPGRFRQILVNLV 579
Query: 507 GNSVKFTERGHIFVKVHLA------------------------------ERTMVKTDAKD 536
N++KFT+ G I V V + + + + +A
Sbjct: 580 SNALKFTKEGSILVSVRVMDPHSEADDQDYPSSDSVYILDPAQKASGSIQMSQMVPNASP 639
Query: 537 ETLLNGGTEEGVCR--SGTGQFNTLSGLEAADGRN--------SWDKFKHLIDAEGFQSN 586
+ N EGV R S + NT L G +W +K
Sbjct: 640 KKSYNYPQIEGVKRDESDLARGNTAPRLSMHPGDEANTREAVAAWRAWK----------- 688
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
+ I+ + ++ T++V VEDTGIGIPL Q R+F PF QADSSTSR YGGTGIGLS
Sbjct: 689 LTTISGRNACKPPKNFTVIVSVEDTGIGIPLHLQNRLFQPFSQADSSTSREYGGTGIGLS 748
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEY--VFEDIKQSKSEDLPPGFKGLK 704
I + LV+LM G ++ S+P GS F FT +E ++ ED +G+
Sbjct: 749 ICQKLVKLMNGALTVKSKPGEGSVFEFTLPLSVPEESGDKLSCCVKASPED-KTKLRGMH 807
Query: 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC 764
+VD VR VT +L LGI + S +D +T + E+K + ++V+
Sbjct: 808 VALVDSNIVRQEVTASYLRCLGICI--DSFTEDVPTTLQ--FLQREEKTKVHAVVVD--- 860
Query: 765 WISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
+ G +L N K ++ L+ ++ + K G + +I KPLR +
Sbjct: 861 -LKGLPHEDILELTRSIRNIPSLKALPMLALSMGLTPTGEIELKETGISH-IIRKPLRYT 918
Query: 825 MIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
+AA L + + R + + +L G+++LVVDDN VNR VA+ L ++GA
Sbjct: 919 TLAAVLLETIGI-----PARAPMKKINLNAIMLSGRRLLVVDDNMVNRRVASSMLTRYGA 973
Query: 885 TVECAASAKAALDKLQSPHC---FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
V A++ +++ FD MDIQMPEMDG+EATRRIR+ E + +N
Sbjct: 974 IVSTVNGGVEAVNAVKNQKIGKEFDLVLMDIQMPEMDGWEATRRIRRWELDCCKLCLNTC 1033
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+ LP++A+TADV+ T C GMD Y++KP +++ L+ L +F K
Sbjct: 1034 EDFCPHHR-----LPVVAVTADVVVQTRSMCFAAGMDDYITKPLDQKQLHALLDRFLK 1086
>gi|194706202|gb|ACF87185.1| unknown [Zea mays]
Length = 438
Score = 365 bits (936), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 212/448 (47%), Positives = 274/448 (61%), Gaps = 24/448 (5%)
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
+GT NTLSG A+ + SW+ F+ F + M + S+ ++LM+ VED
Sbjct: 8 TGTQYTNTLSGYPVANRKRSWENFRL------FSRELNSSEMPFAPIASDSISLMISVED 61
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TG GIP AQ RVF PFMQ S +R +GGTGIGLSISKCLV LM+G+I F S+PQVGST
Sbjct: 62 TGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGST 121
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
F+FTAV + + S++E+ FK + A+VVD +PVRA VT+YHL RLG+ +
Sbjct: 122 FTFTAVLTR--------VHSSRNENKSSEFKEINALVVDHRPVRAKVTKYHLQRLGVQTE 173
Query: 731 MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLP 790
+++ + S KN S K ++L++K+ W+ ++S L+ N
Sbjct: 174 LTTDLDQYIS--KNNCGSQIAK----LVLIDKETWL--KESHSMPLLVTKLRNKDQPDST 225
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS 850
KL LL S + + + VIMKPLRASM+ LQ+ L +K GV G+
Sbjct: 226 KLFLLENPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVV-GN 284
Query: 851 SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
S LL K+I+VVDDN VN VAAGALKK+GA V CA S K A+ L+ PH FDACFM
Sbjct: 285 STLGSLLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFM 344
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
DIQMPEMDGFEAT+RIR ME NEQ+ G + + R + PILAMTADVI AT +
Sbjct: 345 DIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVR-QWRTPILAMTADVIQATHE 403
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFF 998
+CLK MDGYVSKPFE E LYRE+A+FF
Sbjct: 404 QCLKSEMDGYVSKPFEGEQLYREVARFF 431
>gi|157780820|gb|ABV71919.1| hypothetical protein [Brassica rapa subsp. pekinensis]
Length = 323
Score = 362 bits (929), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 194/334 (58%), Positives = 234/334 (70%), Gaps = 23/334 (6%)
Query: 676 VFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSI 735
VF +C + +K+ E+LP F+G++A+VVD KPVRAAVT+YH+ RLGI V + +S+
Sbjct: 1 VFERCDKC---SLKKPTVENLPSSFRGMRAIVVDAKPVRAAVTRYHMKRLGISVDVMTSL 57
Query: 736 KDASSTA--KNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV-FKLPKL 792
+ A STA +NG + D+ILVEKD WIS ED + ++ + NG+V K PKL
Sbjct: 58 RTAVSTASGRNGSPLPSGTTKLDMILVEKDSWISTEDIDAEIRQMNSRTNGNVRHKTPKL 117
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
L ATNI+ E D+AK+ GFADTVIMKPLRASMI ACLQQVL RQ P GSS
Sbjct: 118 ALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKARQQH---PEGSSP 174
Query: 853 H--QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
+ LL GKKILV+DDN VNR VAAGALKKFGA V CA S + AL LQ PH FDACFM
Sbjct: 175 ATLKSLLTGKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHSFDACFM 234
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
DIQMP+MDGFEATR+IR ME +A E+ + E HLPILAMTADVIHAT++
Sbjct: 235 DIQMPQMDGFEATRQIRMMEKEAKEKT------------KLEWHLPILAMTADVIHATYE 282
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
ECLK GMDGYVSKPFEEENLY+ +AK FK+ P+S
Sbjct: 283 ECLKSGMDGYVSKPFEEENLYKSVAKSFKANPIS 316
>gi|168041528|ref|XP_001773243.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
gi|162675438|gb|EDQ61933.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
Length = 1020
Score = 349 bits (895), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 301/983 (30%), Positives = 465/983 (47%), Gaps = 105/983 (10%)
Query: 75 CDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGV 134
C+ R +L+ Q N+++A ++V SA D + + TRT F RP + +
Sbjct: 71 CENRKEVLKSQVE---NNLNASFVIVGLLASVPEVSA---DMWVNFATRTLFLRPTVKRL 124
Query: 135 AYAPRVVDAQREQFERQHGMTITTMK-SEPSPIRD----EYAPVMF-YQEPMSHVKSLDM 188
Y RV A R FER+ +I + S + +R EY+PV+F + + +D
Sbjct: 125 VYVERVPAANRAAFERKWNTSILYINHSNVTEVRSANDTEYSPVVFETDDKVPKYLFVDA 184
Query: 189 MSGEEDRENILRARATGKAVLTRPF--RLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKA 246
+ R I AR TG L+ P R G+ +G L + S+ E R +A
Sbjct: 185 GAYPAYRSAIDAARDTGLFTLS-PVTPRRDGTWQMGAYLAYYGPGRDYTSFSSTEARRQA 243
Query: 247 TAGYIGGPFDVESLVENLLGQLAG----------NQAILVNVYDMTNASD---------P 287
GY+G +V + +L + N + +D N S P
Sbjct: 244 CRGYVGIVMNVTDVFHGVLSRFTDVDDMDVVAVFNVNSKLESFDSYNCSAAASSKSCAVP 303
Query: 288 LIMYGDQNQDGDMSLLHESEL--DFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGL 345
L + G S ++ + ++G + + + + + K A+ + ++ +
Sbjct: 304 LF-----DPAGRASEFSKAAVTWEYGTQHFEVRCLPKRNLKLLALRAAIAWPLLMSLVVI 358
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQEL-------KVRAEAADVAKSQFLATVSHEIRTPMN 398
I+Y + +E++ M+++ K+ AEAAD AKS FLATVSHEIRTPMN
Sbjct: 359 FFSIIVYLVLKRMQAIEEEVRLMEKMNEDLNVAKLAAEAADKAKSNFLATVSHEIRTPMN 418
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
G++GM LL+ T+L++ Q +Y + Q G LIALIN+VLD +KIEA ++ELE+V +++R
Sbjct: 419 GVIGMTNLLMGTNLTTQQLEYVKVVQASGNTLIALINDVLDLSKIEAGRMELESVAYDIR 478
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+D V LF ++++ IEL++ V D VP +++GDPGRF QI+ N+V N++KFT G+I
Sbjct: 479 KEVDGVFLLFDDRAQQNKIELSMLVHDAVPNYIVGDPGRFHQILANVVSNALKFTREGNI 538
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS-----GLEAADGRNSW-- 571
V V R M + ++ G Q + + L +DG +
Sbjct: 539 LVCV----RAMRVSQGNKALFTAITIDQNSAVPGDVQPSQVLPDEPFSLVGSDGMKLYED 594
Query: 572 -DKFKHLIDAEGFQSNAS----------IINMMASNGGSED-VTLMVCVEDTGIGIPLSA 619
D L G +SN S N+ S+ + L+V VEDTG GIP
Sbjct: 595 QDVAPRLSIQPGSESNRSEALDLWRKWEWKNLSGSHCKPPNQFILIVSVEDTGPGIPCHM 654
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
+ R+F PF QADS++SR +GGTGIGL IS+ L++LM G I +S P GS F FT
Sbjct: 655 EPRLFQPFSQADSNSSREHGGTGIGLFISQKLIKLMNGTIRVMSEPGKGSVFEFTL---- 710
Query: 680 CKEYVFEDIKQSKSEDLP---PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK 736
F D LP KGL +VD V +T L G+ V+++
Sbjct: 711 --PASFADTAGGSKPQLPMEDKRLKGLHVALVDTDLVHREITASFLRYSGMHVELAD--- 765
Query: 737 DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLA 796
D ST + + Q ++V+ I G S +L + K +++L
Sbjct: 766 DVQSTMEILQRTGGPTLQ--AVMVD----IKGLPSAPAVELARSIRSTPSLKALSVLVLT 819
Query: 797 TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGL 856
+N +K +I K LR S ++ L + + K QA V ++ + L
Sbjct: 820 SNPVSPPGEKELKDAGVSFIISKSLRLSTGSSVLLEAMGL--KPQA--PVKKKANDNVKL 875
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK++LVVDDN VN+ VA LK++GA V +S + ++ + D MDIQM E
Sbjct: 876 LLGKRLLVVDDNMVNQRVATSMLKRYGAIV---SSVNSGIEDKK----LDLVLMDIQMSE 928
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG++ATR IR E + + S+V+ LPI+A+TAD + T EC G
Sbjct: 929 MDGWQATRHIRNWEVENCDTCCK--SNVNWCRHN---RLPIVAVTADAMKGTHAECFSSG 983
Query: 977 MDGYVSKPFEEENLYRELAKFFK 999
MD Y++KP +++ L L +F K
Sbjct: 984 MDDYITKPLDQKQLQSLLERFIK 1006
>gi|115488474|ref|NP_001066724.1| Os12g0454800 [Oryza sativa Japonica Group]
gi|113649231|dbj|BAF29743.1| Os12g0454800, partial [Oryza sativa Japonica Group]
Length = 959
Score = 326 bits (836), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 195/433 (45%), Positives = 254/433 (58%), Gaps = 32/433 (7%)
Query: 29 FIQSNRAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNV 88
F S W+ AL+LW+ + S+ I M + R L MCD+RAR+LQDQ V
Sbjct: 4 FTGSACHWM--ALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKV 61
Query: 89 TVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQF 148
++NH+ AL ILVSTFH+ K+PSA+DQ TFA Y RTAFERPL SG+AYA RV ++RE F
Sbjct: 62 SMNHLQALAILVSTFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELF 121
Query: 149 ERQHGMTITTMK-SEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKA 207
ERQ +I M S P +EYAPV+F Q+ HV S+DM+SG EDR N+LRAR +GK
Sbjct: 122 ERQQAWSIRAMNFSSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKV 181
Query: 208 VLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
VLT PF+LL +GVVLT+ VYKS+LP +TV +RI+++ GY+GG FD+E V+ LL +
Sbjct: 182 VLTAPFQLLNK-RIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEK 240
Query: 268 LAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKA 327
LAG + + VN+YD T S + MYG N+ + H S LDFGD RKH+M CR+ Q
Sbjct: 241 LAGKEPMTVNIYDTTGES-MIRMYGSSNESAS-GMCHVSTLDFGDPLRKHEMHCRFTQGP 298
Query: 328 STPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV---AKSQ 384
PW A+ +++ VI LLVGYI + I KVED + +A D+ AK +
Sbjct: 299 PWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGY----------KATDMQMPAKDE 348
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSST---------QRDYAQTAQICGKALIALIN 435
F AT E + M L AL DT S + RD AQ + L L
Sbjct: 349 FAAT---ERISDMERDLKEDALFFDTTKSPSLLEISRLLNHRDPAQNVHQEEQEL-NLPL 404
Query: 436 EVLDRAKIEARKL 448
E D+ K RKL
Sbjct: 405 EAQDKLKETERKL 417
>gi|45861625|gb|AAS78641.1| putative cytokinin receptor [Oryza sativa]
gi|77555555|gb|ABA98351.1| CHASE domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|110331745|dbj|BAE97710.1| receptor-like serine/threonin kinase [Oryza sativa Japonica Group]
gi|125579248|gb|EAZ20394.1| hypothetical protein OsJ_36000 [Oryza sativa Japonica Group]
Length = 948
Score = 325 bits (833), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 192/422 (45%), Positives = 250/422 (59%), Gaps = 30/422 (7%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
AL+LW+ + S+ I M + R L MCD+RAR+LQDQ V++NH+ AL IL
Sbjct: 2 ALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAIL 61
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
VSTFH+ K+PSA+DQ TFA Y RTAFERPL SG+AYA RV ++RE FERQ +I M
Sbjct: 62 VSTFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAM 121
Query: 160 K-SEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGS 218
S P +EYAPV+F Q+ HV S+DM+SG EDR N+LRAR +GK VLT PF+LL
Sbjct: 122 NFSSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLTAPFQLLNK 181
Query: 219 HHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNV 278
+GVVLT+ VYKS+LP +TV +RI+++ GY+GG FD+E V+ LL +LAG + + VN+
Sbjct: 182 -RIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNI 240
Query: 279 YDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAF 338
YD T S + MYG N+ + H S LDFGD RKH+M CR+ Q PW A+ +++
Sbjct: 241 YDTTGES-MIRMYGSSNESAS-GMCHVSTLDFGDPLRKHEMHCRFTQGPPWPWLAVASSY 298
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV---AKSQFLATVSHEIRT 395
VI LLVGYI + I KVED + +A D+ AK +F AT E +
Sbjct: 299 GTLVISLLVGYIFHFTDKWIAKVEDGY----------KATDMQMPAKDEFAAT---ERIS 345
Query: 396 PMNGILGMLALLLDTDLSST---------QRDYAQTAQICGKALIALINEVLDRAKIEAR 446
M L AL DT S + RD AQ + L L E D+ K R
Sbjct: 346 DMERDLKEDALFFDTTKSPSLLEISRLLNHRDPAQNVHQEEQEL-NLPLEAQDKLKETER 404
Query: 447 KL 448
KL
Sbjct: 405 KL 406
>gi|125536525|gb|EAY83013.1| hypothetical protein OsI_38233 [Oryza sativa Indica Group]
Length = 1019
Score = 325 bits (833), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 192/422 (45%), Positives = 250/422 (59%), Gaps = 30/422 (7%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
AL+LW+ + S+ I M + R L MCD+RAR+LQDQ V++NH+ AL IL
Sbjct: 2 ALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAIL 61
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
VSTFH+ K+PSA+DQ TFA Y RTAFERPL SG+AYA RV ++RE FERQ +I M
Sbjct: 62 VSTFHHSKSPSAIDQTTFARYMERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAM 121
Query: 160 K-SEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGS 218
S P +EYAPV+F Q+ HV S+DM+SG EDR N+LRAR +GK VLT PF+LL
Sbjct: 122 NFSSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLTAPFQLLNK 181
Query: 219 HHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNV 278
+GVVLT+ VYKS+LP +TV +RI+++ GY+GG FD+E V+ LL +LAG + + VN+
Sbjct: 182 -RIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNI 240
Query: 279 YDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAF 338
YD T S + MYG N+ + H S LDFGD RKH+M CR+ Q PW A+ +++
Sbjct: 241 YDTTGES-MIRMYGSSNESAS-GMCHVSTLDFGDPLRKHEMHCRFTQGPPWPWLAVASSY 298
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADV---AKSQFLATVSHEIRT 395
VI LLVGYI + I KVED + +A D+ AK +F AT E +
Sbjct: 299 GTLVISLLVGYIFHFTDKWIAKVEDGY----------KATDMQMPAKDEFAAT---ERIS 345
Query: 396 PMNGILGMLALLLDTDLSST---------QRDYAQTAQICGKALIALINEVLDRAKIEAR 446
M L AL DT S + RD AQ + L L E D+ K R
Sbjct: 346 DMERDLKEDALFFDTTKSPSLLEISRLLNHRDPAQNVHQEEQEL-NLPLEAQDKLKETER 404
Query: 447 KL 448
KL
Sbjct: 405 KL 406
>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1154
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 220/651 (33%), Positives = 324/651 (49%), Gaps = 87/651 (13%)
Query: 373 VRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIA 432
RA+AA AKS+FLA +SHEIRTPMNG++GM LLL+TDL+ TQR YA+T + G+AL+A
Sbjct: 408 TRADAASKAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLNETQRRYAETVRSSGQALLA 467
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
L+N++LD +KIE+ KLELEA+ F+LR LD+ S+ + K+ KG+E VP+ ++
Sbjct: 468 LLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLI 527
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
GDPGR RQI+TNLVGN+VKFTERG + V+V + E GV R
Sbjct: 528 GDPGRIRQILTNLVGNAVKFTERGEVVVRVSI-------------------QESGVRRQE 568
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
TG + +G DK + D S E L V DTG
Sbjct: 569 TGDKSQETG----------DKSQETGDK--------------SQESEEFCMLRFSVRDTG 604
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
IGIP +F F Q D+S +R +GGTG+GL+IS+ L ELM G++ S G+TF
Sbjct: 605 IGIPEDKIGLLFQSFSQVDASVTRKFGGTGLGLAISRQLAELMGGEVGVESIEGQGTTFW 664
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
FT + D S S DL +GL+A+VVD+ + G+
Sbjct: 665 FTVPLSLAETC---DQIPSMSADL----RGLRALVVDDNATNREILLTRFLDWGL---RP 714
Query: 733 SSIKDASSTAKNGLT--SSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLP 790
KD + T + +D + II D + G D F + + +
Sbjct: 715 DEAKDGPTALGRLYTALAEDDPYHLAII----DMQMPGMDGEFLGRTIR---ADQKLQDV 767
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK-----RQAGRG 845
+L+++++ + + + K FA + KPLR + CL V++ + R + R
Sbjct: 768 RLVMMSSAGMQGDARRMKDIWFA-AFLAKPLRHDELFDCLSLVMAGDEPQDLVTRHSARE 826
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+ S R +IL+ +DN N+ VA LK FG + + A+ A+ L++ +
Sbjct: 827 EKSRSGKIDFSDRKARILLAEDNITNQQVALAMLKNFGLSADAVANGLEAIKALKTV-PY 885
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANE--------QMMNGGSSVDGT---------- 947
D MD+QM EMDG ATRRIR E + E + + SS+ +
Sbjct: 886 DLVLMDVQMLEMDGLAATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLN 945
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
++ E +PI+A+TA + ++CL+ GMD Y++KP E L L K+
Sbjct: 946 SRIPEFRIPIIALTAHAMQGYREQCLEAGMDDYLTKPLEPVQLAEMLDKWL 996
>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1437
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 215/667 (32%), Positives = 331/667 (49%), Gaps = 111/667 (16%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
++ AE A AKS+FLA +SHEIRTPMNG++GM LLLDTDL S Q+ YA+T + ++L+
Sbjct: 689 RINAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTDLDSEQQHYARTVRSSAESLL 748
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA +L++E V F+L A+L D + + K+ KG+EL + VP V
Sbjct: 749 TVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSMV 808
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
GD GR RQI+ NLVGN+VKFTE G + +KV MV + ++ N T+E
Sbjct: 809 RGDSGRLRQILMNLVGNAVKFTEHGEVEIKV----SRMVNDECENP---NAETQE----- 856
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
NS D ++ F + S + + V DT
Sbjct: 857 -----------------NSHDLYR-----SSFTTQHSCL-------------MHFSVRDT 881
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIGIP Q+ +F F Q D+ST+R +GGTG+GL+IS+ L E+M G S GSTF
Sbjct: 882 GIGIPEDKQDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEIMGGTAGLESVEGRGSTF 941
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT G E Q + P +G++ ++VD+ + L G+ +
Sbjct: 942 WFTVRLGIQHE-------QQQERPAPACLQGVRTLIVDDNSTNRETLRVRLGSWGMRSEE 994
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPK 791
+++ A S + D F+ ++ ++ + GE G N K +G K +
Sbjct: 995 AANGSTALSMLHQA-KADNDPFEVAVLDMQMPD-MDGETLGRNI-----KEDGQ-LKDTR 1046
Query: 792 LILLATNISKD-ECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN----------KR 840
LI++++ + + + GF D+++ KP+ S + ACL+++L+ + +
Sbjct: 1047 LIMMSSATGQTGDAKRLHEAGF-DSIMNKPVLPSELYACLEKILAKTDTADLVAEHAERE 1105
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ +G P+ S +ILV +DN VN+ VA G LKK G + A+ + L LQ
Sbjct: 1106 ETPKGYPDFSGTK------ARILVAEDNMVNQQVALGILKKMGLRADAVANGREVLHALQ 1159
Query: 901 S-PHCFDACFMDIQMPEMDGFEATRRIRQME------------SKANEQMMNG---GSSV 944
+ P +D MD+QMPEMDG +ATRRIR E S+ ++Q + SS+
Sbjct: 1160 NIP--YDLVLMDVQMPEMDGLKATRRIRASEVRGQKSEIRSQKSEVSDQRLESESQNSSI 1217
Query: 945 -------------DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
+ +PI+AMTA + + C++ GMD Y +KP + L
Sbjct: 1218 PESPNSSTPKSPNSSIPESQNPRIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELA 1277
Query: 992 RELAKFF 998
R L K+
Sbjct: 1278 RVLEKWL 1284
>gi|389875458|ref|YP_006373193.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530413|gb|AFK55609.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1592
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 207/631 (32%), Positives = 304/631 (48%), Gaps = 84/631 (13%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++ KV AE A AKS FLA +SHEIRTPMNG++GM +LL T L QR YA+T +
Sbjct: 888 LERAKVMAETASQAKSDFLANMSHEIRTPMNGVMGMTQILLGTPLDDEQRGYAETVRDSA 947
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+AL+ +I+++LD +K+EA ++ELE + F+L +LD V ++ + ++R+KGIE+A
Sbjct: 948 EALLVVIDDILDISKLEADRVELEHLPFDLTGLLDGVAAILAPRARDKGIEIACMAEPDT 1007
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKD-ETLLNGGTEE 546
LGDP R RQI+ NL GN+VKFTERGH+ V V R + +D E + N E+
Sbjct: 1008 GTGWLGDPTRLRQILLNLAGNAVKFTERGHVAVTV----RDLGPVACEDCEDVGNESGED 1063
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
RSG A G++ L+
Sbjct: 1064 CEGRSGG----------------------------------------ADRPGTDHRRLLF 1083
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIG+ ++F F QAD+S +R +GG+G+GL I LVELM G IS S P
Sbjct: 1084 EVRDTGIGMSADQTAKLFHKFAQADASITRRFGGSGLGLVICLKLVELMGGTISVDSEPG 1143
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F F E E L G +G +A++VD+ P+ V +HL LG
Sbjct: 1144 RGSVFRFEVPL----ERTTLPAPPEGGEGLEAGLRGRRALIVDDLPLNRRVLAHHLGELG 1199
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
+ + ++ + ++ L + + LV D + G D L P
Sbjct: 1200 MEISEATDVAESLH-----LLEKAAQTGTPVDLVVTDLNLGGMDGAILGTWLRLHPR--- 1251
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
F+ + IL A++ A+A D VI KP+R + L + A
Sbjct: 1252 FQTVRTILAASSPP-----SAEAARVFDAVITKPIRRGELITALARSFGLSPPPAA---- 1302
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
+ L G+++L+V+DN VN+ VA+ L+K G V + A++ ++ FD
Sbjct: 1303 SAEAPPSAPLTAGRRVLLVEDNTVNQAVASTILEKQGYRVAVVENGAEAIEACRADD-FD 1361
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
FMD+QMP MDG EATRRIR E+++ PI+AMTA+ +
Sbjct: 1362 LVFMDVQMPVMDGMEATRRIRTAEAESGRP-----------------RTPIVAMTANAMA 1404
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+E + GMD +V KPF E L A++
Sbjct: 1405 GMREEYMAAGMDDFVPKPFRAEKLLAMAARW 1435
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 179 PMSHVKSLDMMSGEEDRENILRARA-TGKAVLTRPFRLL---GSHHLGVVLTFPVYKSKL 234
P + LD+ S E R RA +G+A LT P L+ G+ G +L PVY+ +
Sbjct: 157 PNAGAAGLDIAS-EISRAGAARAAMISGEAALTAPITLVQATGARDRGFLLLLPVYRPGM 215
Query: 235 PPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDP 287
P TV ER+ AT G+ P ++ + L G ++ + +++ D+T+ DP
Sbjct: 216 P-LGTVAERMAATTGWTYAPLVIDDV---LAGTGHDDRPVELSIRDVTD--DP 262
>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1175
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 217/702 (30%), Positives = 335/702 (47%), Gaps = 132/702 (18%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+VK D + +E AE A AKS FLA +SHEIRTPMNG++GM LLLDTDL S Q+
Sbjct: 380 LVKARQDLIQAKE---HAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDLDSEQQ 436
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
YA+T + ++L+ +IN++LD +KIEA +L++E V F+L A+L D + + K+ KG+
Sbjct: 437 HYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGL 496
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
EL + VP V GD GR RQI+ NLVGN+VKFTE G + ++V +E +++ D+
Sbjct: 497 ELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSEVVDQRSEVSDQ 556
Query: 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
E+ +G++ D++ G
Sbjct: 557 PANRLSHEQ-------------TGIK--------DQY----------------------G 573
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
S V L + DTGIGIP Q+ +F F Q D+ST+R +GGTG+GL+IS+ L E+M G
Sbjct: 574 DSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEMMGG 633
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
S GSTF FT G E Q + +P +G++ ++VD+ +
Sbjct: 634 TAGLESVEDQGSTFWFTVRLGVQDE-------QQQERPVPACLQGVRTLIVDDNSTNREI 686
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW---ISGEDSGFN 774
+ G+ +++ S A + L ++ + P +L D + GE G N
Sbjct: 687 LRVRFGSWGMRPGEAAN----GSAALSMLHQAKAENDP-FVLAVLDMQMPDMDGETLGRN 741
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKD-ECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
K +G K +LI++++ + + + GF D+++ KP+ S + A L+++
Sbjct: 742 I-----KEDGQ-LKDTRLIMMSSATGQTGDSRRLHETGF-DSILNKPVLPSELYASLEKI 794
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRG--------KKILVVDDNGVNRMVAAGALKKFGAT 885
L+ R +P G + + + +G +ILV +DN VN+ VA G LKK G
Sbjct: 795 LA----RTGAADLPAGHTEPEKIRQGYPDFSGTKARILVAEDNMVNQQVALGILKKMGLR 850
Query: 886 VECAASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQME-------------- 930
+ A+ + AL L++ P +D MD+QMPEM G EATRRIR ME
Sbjct: 851 ADAVANGQEALHALENIP--YDLVLMDVQMPEMGGLEATRRIRSMEHGTPVKPLSTTGSP 908
Query: 931 ---------------------SKANEQMMNGGSSVDGTAKRDELHLP------------- 956
S+ +Q + S + +P
Sbjct: 909 LGCFTGQAGGMEHGAEDKGQRSEVRDQRLESESQNTSVPESLNPSIPQFLNSSIPEFRIP 968
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
I+AMTA + + C++ GMD Y +KP + L R L K+
Sbjct: 969 IIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWL 1010
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 21/138 (15%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVVDD R + L+ V A++ AL + + D +D+ MP+MDGFE
Sbjct: 9 ILVVDDTQTIRHITKKTLEADNYVVLAASNGPEAL-SIAADKIPDLILLDVMMPDMDGFE 67
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
R+ KA+ RD +P++ +TA + L G + +V
Sbjct: 68 VCSRL-----KAD------------ICTRD---IPVVFITASGNKEHEVKGLDLGAEDFV 107
Query: 982 SKPFEEENLYRELAKFFK 999
KPF E L + + +
Sbjct: 108 HKPFHEGVLLARVGQILR 125
>gi|428213913|ref|YP_007087057.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002294|gb|AFY83137.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1680
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 209/688 (30%), Positives = 316/688 (45%), Gaps = 119/688 (17%)
Query: 349 YILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL 408
Y G I V D+ +++ E + A A KSQFLA +SHEIRTPMNG+LGM LLL
Sbjct: 925 YSPTGEVGGIAIVTDNINELVEARETALEAARIKSQFLANMSHEIRTPMNGVLGMTGLLL 984
Query: 409 DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLF 468
T LS+ QRD A+T +I G+ L+ +IN++LD +K+EA ++ LE++ F L +++V+ L
Sbjct: 985 QTSLSNQQRDCAETIRISGEHLLRVINDILDFSKLEAGEMNLESLDFQLSTCIEEVVDLL 1044
Query: 469 SEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+ + KG+ELAV++ KVP+ ++GDP R RQI+ NL+ N +KFT RG + V+V+ +
Sbjct: 1045 AAPAHQKGLELAVWIDPKVPQHLIGDPARLRQILLNLINNGIKFTHRGEVVVQVNQS--- 1101
Query: 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNAS 588
K E+L A G+ W +F
Sbjct: 1102 -----MKPESL------------------------DAKGQEVWLRF-------------- 1118
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
V+DTGIGIP Q ++F F Q D+ST+R YGGTG+GL+I
Sbjct: 1119 ------------------TVQDTGIGIPKERQNKLFQSFSQVDTSTTRRYGGTGLGLAIC 1160
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K LVELM G+I S P GS F F F K V I + LP +K +V
Sbjct: 1161 KQLVELMGGEIGVESYPDRGSNFWFELKFRKQGTRVSGSIPRCA---LPIALTEVKVLVA 1217
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE------- 761
+Y GI + + T + T+ + +Q I+ +
Sbjct: 1218 HPSAATRQSLRYLAADWGIGLDEVENYSSLCQTLQAAATAGQ-PYQVAIVDLHLLLGLED 1276
Query: 762 ---------------KDCWISGEDSG-----FNAQLLDWKPNGHVFKLPKLILLATNISK 801
DC +S E F +L + P +F + L ++
Sbjct: 1277 DRQEHGDCQEDCKNCTDCTLSDEPDPSMVEEFIQKLSPFTPETSLFLMTTLQYRDRALAL 1336
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV------PNGSSFHQG 855
+C + + F + ++KP+R+S + L V+ R R V P S H
Sbjct: 1337 VQCSQQRGLSFVEGHLVKPVRSSQLLNSLMTVVLRPQTRSGDRTVSDSPQNPVPSPIHSP 1396
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
+ KILV +D+ +N+ V L+ G EC + A+ +L H +D MD QMP
Sbjct: 1397 V----KILVAEDHPINQQVILQQLEALGYQGECVGNGVEAIARLGQKH-YDIVLMDCQMP 1451
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-----ILAMTADVIHATFD 970
+DG++ T+ IR+ E+ GS T H P ++A+TA + A +
Sbjct: 1452 GLDGYQTTQEIRKREAT--------GSLCQSTESDSPDHSPPHKTVVIALTAHAMSAERE 1503
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFF 998
+CL GMD Y+SKP ++L L ++
Sbjct: 1504 KCLAAGMDDYLSKPVHLDHLSALLERWI 1531
>gi|428218417|ref|YP_007102882.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990199|gb|AFY70454.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1669
Score = 286 bits (731), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 218/670 (32%), Positives = 329/670 (49%), Gaps = 92/670 (13%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+Q+ K AEAA+ AKS+FLA +SHEIRTPMNG++GM LLLDT LS QR+Y + + G
Sbjct: 1039 LQQAKQDAEAANRAKSEFLAMMSHEIRTPMNGVIGMTGLLLDTPLSKVQREYVEIVRSSG 1098
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
++L+ +IN++LD +KIE+ KLELE F+L L + L K+ KG+ L + V
Sbjct: 1099 ESLLTIINDILDFSKIESGKLELEEQPFDLLDCLAGSIDLLGPKAVEKGLVLNYLIEPDV 1158
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE----------RTMVKTDAK-D 536
P+ + GD R RQI+ NL+ N +KFTE G + V V L+ R++ + D++ D
Sbjct: 1159 PQQITGDVTRLRQILVNLIANGIKFTEAGEVSVTVSLSSAMDSSSSLDGRSLSQLDSETD 1218
Query: 537 ET-LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS 595
ET N E G + +G+ + L ++DG N+ + ++ E QS A
Sbjct: 1219 ETDEFNPANEWGQG-AKSGESDQSGELASSDGGNNLEAIAA-VEPEHNQSLA-------- 1268
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
T+ V DTGIGIP ER+F F Q D+S +R YGGTG+GL ISK L ELM
Sbjct: 1269 ----HSHTIQFAVRDTGIGIPPEKMERLFKAFSQVDASITRQYGGTGLGLVISKRLCELM 1324
Query: 656 RGQISFVSRPQVGSTFSFT-AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVR 714
G + S GS F FT + E I + + GLKA++V ++
Sbjct: 1325 GGTMRVESELDRGSIFYFTLSTTAIASESTSTSINYVQKQ-----LNGLKALIVADREDN 1379
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774
A+ + GI K +SS +A L+ D+ D++++ D + D
Sbjct: 1380 RAILSTYTQAWGIETKTTSSGAEA-------LSMLSDRQNFDLVIL--DLQMPVADELKL 1430
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
AQ + G +P ++L + +S + +A A ++ KPL S + + +++
Sbjct: 1431 AQSMQSTVPGK--PIPLILLTSVGVSTKQLQQASNHRIA--ILAKPLSQSKLHQAIVRII 1486
Query: 835 STEN--------KRQ--------AGRGVPNGSSFHQGLLRGK-----------KILVVDD 867
+N +RQ A PN ++F R + KIL+ +D
Sbjct: 1487 PDQNIDNVKPWQRRQEVTTSTNRAAHDRPNPTTFRSSSNRLENVANLSNQIPIKILLAED 1546
Query: 868 NGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIR 927
N VN+ VA L+K G + + A++ LQ +D MD+QMPEMDG EATR+IR
Sbjct: 1547 NAVNQKVAIRMLEKMGYRADLVGNGLEAIEALQR-QTYDLVLMDVQMPEMDGMEATRQIR 1605
Query: 928 QMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEE 987
D T + + H I+AMTA+ + + CL GM+ YVSKP
Sbjct: 1606 -----------------DRT--KADTHPWIVAMTANAMQGDRENCLAAGMNDYVSKPVSV 1646
Query: 988 ENLYRELAKF 997
+ L + ++
Sbjct: 1647 DELVAAIERY 1656
>gi|168016157|ref|XP_001760616.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162688313|gb|EDQ74691.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1382
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 224/745 (30%), Positives = 353/745 (47%), Gaps = 124/745 (16%)
Query: 112 LDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIR---- 167
+D + +T RT F RP + + Y R++ +QR +FER H +I T+ + S R
Sbjct: 203 VDDTIWKNFTRRTLFLRPNVKTLVYCQRLLGSQRAEFERAHNRSIMTVLANSSWARREQA 262
Query: 168 DEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTF 227
DEYAPV+F + + + D S + +++AR TG L+ P G+ +G L +
Sbjct: 263 DEYAPVVFETDDVD-LYMYDAGSSPILNQALVKARDTGMFTLSPPSPWEGTFQMGAYLAY 321
Query: 228 PVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLA------------------ 269
++V R A GY+ ++ + +L + A
Sbjct: 322 YGPGKDSTNFTSVSARKNACLGYVATVLNIVEVFGAVLSRCAFVWFVRRGSINRMKHALT 381
Query: 270 ---------GNQAI-LVNVYDMTNASDPLIMYG--------------DQNQDGDMSLLHE 305
N+ + +V VY++ +P + Y N+ + S +
Sbjct: 382 IEKAVVRFIDNEDMDVVAVYNVDPNIEPHVAYNCTSTVTPCALPLFDPSNRSKERSDVFV 441
Query: 306 SELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDF 365
+ + G + + + + + K S L ++ L I+Y ++ +E D
Sbjct: 442 A-WEVGSQNFELRCLPKSNMKLSAFRNVAAWPLLLAMVILFCAIIVYLVLKRMMVIEKDL 500
Query: 366 HKMQELKVR-------AEAADVAKSQFLATVSHEIRTPMNGILG---------------- 402
M+++ + AEAA+ AKS FLATVSHE+RTPMNG++G
Sbjct: 501 SIMEKMNAKLTAATMAAEAAEKAKSSFLATVSHELRTPMNGVIGSPIQTIVLVCQSSDSR 560
Query: 403 --------------MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448
M LL+ T L+ Q +Y + AQ CGK+L+ALIN+VLD +KIEA K+
Sbjct: 561 WILFLLGTYSSHEGMTNLLMGTKLNPQQLEYVRIAQACGKSLVALINDVLDLSKIEAGKM 620
Query: 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGN 508
E+E+V FN+R +D++L LF EK + +E+A + D VP +LGDP R RQ++ NLV N
Sbjct: 621 EIESVQFNIRDEIDEILLLFVEKESHMHLEMAALIHDAVPSCLLGDPTRIRQVLVNLVSN 680
Query: 509 SVKFTERGHIFVKVH------------LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQF 556
++KFT++G IF+ V L E T + +K TL + G+ + V +S +G
Sbjct: 681 AMKFTKQGSIFLCVRILDTCHSDRLLPLPEVTNSRPRSKHFTLGSVGSGQVVNKSSSGSD 740
Query: 557 NTLSGLEAAD------GRNSWDKFKHLI--------DAEGFQSNASIINMMASNGGSED- 601
T G+ +D G+++ HL+ A + + G +E
Sbjct: 741 TT--GMVGSDRDTTYRGKSAKISEMHLVAPRLSMVPGALSTREAVAAWRRWEPKGSTETA 798
Query: 602 ----VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
VTL++ VEDTGIGIPL R+F PF+QADSSTSR YGGTG+GLSI K L LM+G
Sbjct: 799 EPRLVTLVISVEDTGIGIPLHLHNRLFQPFLQADSSTSREYGGTGVGLSICKKLAWLMKG 858
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQS--KSEDLPPG----FKGLKAVVVDEK 711
I+ S P GS F T G E + + + K + P +G + ++VD
Sbjct: 859 DITVNSNPGEGSVFELTVTLGLPPEPFYTNWEAGCVKPDQKPTADHEKLRGARVILVDTH 918
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIK 736
PVR + +L RLG++V+ + ++
Sbjct: 919 PVRQEASASYLRRLGVVVEETEDLR 943
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 106/227 (46%), Gaps = 46/227 (20%)
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
LP + L I ++E KA G++ T I KPLR + + L + L + PN
Sbjct: 1038 LPVIALTCPQIHEEELKKA---GYSST-IFKPLRHATVTTILLEALGVRTVTPTTKVAPN 1093
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP---HCF 905
LL GK++LVVDDN VNR VA L ++GATV A++ ++ F
Sbjct: 1094 PK-----LLVGKRLLVVDDNMVNRRVATSMLARYGATVAAVNGGMEAINAIRDQKVDEAF 1148
Query: 906 DACFMDIQMPE-----------------------MDGFEATRRIRQMESKANEQMMNGGS 942
D MDIQMPE MDG+EATRRIR E + EQ
Sbjct: 1149 DLVLMDIQMPEVEPDSNIFNLDSPVSGTCCLWFAMDGYEATRRIRTWEIEVCEQ-----C 1203
Query: 943 SVDGTAKRDEL------HLPILAMTADVIHATFDECLKCGMDGYVSK 983
S D A EL HLPI+A+TADV T + C GMD Y+SK
Sbjct: 1204 SEDRIASELELLKCSHYHLPIVAVTADVTKETHELCFDAGMDDYISK 1250
>gi|225429946|ref|XP_002281288.1| PREDICTED: histidine kinase 3-like [Vitis vinifera]
Length = 337
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/340 (47%), Positives = 212/340 (62%), Gaps = 14/340 (4%)
Query: 667 VGSTFSFTAVF-GKC---KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
+ + T VF G C EY + ++S + F+G+ A+VVD PVRA V+++H+
Sbjct: 4 IANPSKVTTVFSGGCSISNEYKCQP-TNNQSNAVSSEFQGMAALVVDPNPVRAKVSRHHI 62
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
RLGI V+++S + S +G T+ + +LVE D W +DS +A ++
Sbjct: 63 QRLGIHVEVTSDLNQVFSGISSGNTAI------NRVLVEHDVW--DKDSNLSALFVNKLK 114
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ PKL LLA +IS A +G + TVIMKPLRA M+AA LQ+ L NK
Sbjct: 115 KLDLEVPPKLFLLANSISSTRNSAAISGVYNSTVIMKPLRAGMLAASLQRALGVGNKGVC 174
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
G S + LLRG+KILVVDDN VN VAAGALKK+GA + CA S K+A+ L+ P
Sbjct: 175 QNGEHPSLSL-RSLLRGRKILVVDDNNVNLRVAAGALKKYGADMVCADSGKSAIPLLKPP 233
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H FDACFMDIQMPEMDGFEAT IR+ME N ++ +G SV+ A HLPILAMTA
Sbjct: 234 HDFDACFMDIQMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTA 293
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
DVI AT +ECL+CGMDG+VSKPFE E LYRE+++FF+ P
Sbjct: 294 DVIQATHEECLRCGMDGHVSKPFEAEQLYREVSRFFQPPP 333
>gi|389875495|ref|YP_006373230.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530450|gb|AFK55646.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1552
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 204/640 (31%), Positives = 316/640 (49%), Gaps = 116/640 (18%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K+ AE A+ AKS FLA +SHEIRTPMNG++GM +LL TDL+ QR +A+T + +AL+
Sbjct: 899 KIVAETANQAKSDFLANMSHEIRTPMNGVMGMTHILLGTDLTPEQRGHAETVRESAEALL 958
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+I+++LD +K+EA ++ELE + F L +L+ V ++ + ++R+KGIE+A + +
Sbjct: 959 GVIDDILDISKLEAERVELEHIPFVLGDVLEGVAAILAPRARDKGIEIACYPDEDAGGVW 1018
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R RQI+ NL GN+VKFTERGH+ V +
Sbjct: 1019 VGDPTRLRQILLNLAGNAVKFTERGHVTVGASVG-------------------------- 1052
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+GL DGR W HL F+ + I M A G
Sbjct: 1053 --------AGLN--DGR--W----HL----RFEVRDTGIGMTAEQAG------------- 1079
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
R+F F QAD+S +R +GGTG+GL+IS+ L++LM G I+ SR GS F
Sbjct: 1080 ----------RLFRKFSQADASITRRFGGTGLGLAISQKLMDLMGGSITVESRIGEGSVF 1129
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
F V + E +E++ +G++A++VD+ V + +HL +LG++V
Sbjct: 1130 RFDVVLERGTEAPLR-----PTEEIGDHLRGMRALIVDDLAVNRRILAHHLVQLGMIVDE 1184
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA-QLLDW-KPNGHVFKL 789
+S + + S + S+ D+++ + + G N +L +W + N H F+
Sbjct: 1185 ASDVASSLSVIEEQRRRSQ---MIDLVITDYNL------GGMNGVELAEWLRMNSH-FRG 1234
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
+LIL A+ + DK ++ D V+ KP+R + L + ++ A P+
Sbjct: 1235 VRLILAASELPT--VDKLQS---FDAVVAKPIRGRELMVALARAFGIRDEETA----PSS 1285
Query: 850 SSFHQGLL---RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
S+ Q G+ +L+V+DN VN+ VA L G V + A+ + FD
Sbjct: 1286 SAATQERALSGDGRHVLLVEDNAVNQTVARTILSDAGYVVTIVGDGEQAVSACATTQ-FD 1344
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
FMD+QMP MDG EATRRIR E++ RD + I+AMTA+ +
Sbjct: 1345 IVFMDVQMPVMDGMEATRRIRAAEAREG---------------RD--RVAIVAMTANAMS 1387
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
+E L GMD +V KPF L A++ +GA
Sbjct: 1388 GMREEYLAVGMDDFVPKPFAAPQLLEAAARWSSGPASAGA 1427
>gi|428312486|ref|YP_007123463.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254098|gb|AFZ20057.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1949
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 215/670 (32%), Positives = 320/670 (47%), Gaps = 80/670 (11%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AEAA+ AKS+FLAT+SHEIRTPMN ++GM LLLDT+++ Q + +T + G+AL+
Sbjct: 1161 KQAAEAANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTEVTPQQHQFVETIRNSGEALL 1220
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIE+ KLELE F LR +++ L L + K+ K +ELA + + P +
Sbjct: 1221 TIINDILDFSKIESGKLELEEQPFKLRMCIEESLDLLAPKAAEKELELAYLIDSQTPVTI 1280
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
GD R RQI+ NL+ N+VKFT G + V V A+ VK + E++ N
Sbjct: 1281 AGDVTRLRQILVNLLSNAVKFTRSGEVTVSV-TAKGVPVKHEVGRESVGNN--------- 1330
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
G + N+ + D Q S +++ ++ V+DT
Sbjct: 1331 --------PGFSISPSPNTQPQLDKPCDPGTRQDTLSSVSVHPVPYPYYEIQF--AVKDT 1380
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIGIP +R+F PF Q DSSTSRHYGGTG+GL ISK L E+M G+I S GS F
Sbjct: 1381 GIGIPTERLDRLFQPFSQVDSSTSRHYGGTGLGLVISKRLCEMMGGRIWVESEVGKGSIF 1440
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT + D+ ++ P +G + ++VD+ + G++ +
Sbjct: 1441 YFTVIAHAVYSSTPTDLDVAQ-----PQLEGKRLLIVDDNATNRKILTLQGKSWGMLTRA 1495
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPK 791
+ S ++A G + F I+ D + G D A + KP +LP
Sbjct: 1496 AHSGREALDWLSQG-----ELFDLAIL----DMQMPGMDGLTLATEIRKKPGYQ--ELPL 1544
Query: 792 LILLATNISKDE-CDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE--NKRQAGRGVPN 848
++L T+I K E D ++ FA + KP++ S + L QVL + R P
Sbjct: 1545 VML--TSIGKPESSDPSQMSHFA-AFLNKPIKQSQLYESLNQVLLGQPIKVRPLCSLYPE 1601
Query: 849 GSS--FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
S H+ L KIL+ +DN VN+ VA L++ G + + L+ + +D
Sbjct: 1602 IDSNLAHKLPL---KILLAEDNVVNQQVALHLLQRLGYRADVVGNGLEVLEAVHR-QSYD 1657
Query: 907 ACFMDIQMPEMDGFEATRRIRQMES------KANEQMMNGGSSVDGTAKRDELHLP---- 956
MD+QMPEMDG A RI Q S A E ++ V T + + P
Sbjct: 1658 VVLMDVQMPEMDGLTAAHRISQESSFAWELEAAGENLITAFPGVSLTETHQQSNSPTSTN 1717
Query: 957 -------------------ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
I+AMTA+ + + CL+ GMD Y+SKP + L R L+K
Sbjct: 1718 RPPEKVPGQPNSKSNKRPRIIAMTANAMQGDREMCLEAGMDDYISKPIRMKELVRALSKC 1777
Query: 998 ---FKSKPLS 1004
K PL+
Sbjct: 1778 QEELKVSPLN 1787
>gi|148534279|gb|ABQ85264.1| CRE1 [Arabidopsis thaliana]
gi|148534281|gb|ABQ85265.1| CRE1 [Arabidopsis thaliana]
gi|148534283|gb|ABQ85266.1| CRE1 [Arabidopsis thaliana]
gi|148534285|gb|ABQ85267.1| CRE1 [Arabidopsis thaliana]
gi|148534287|gb|ABQ85268.1| CRE1 [Arabidopsis thaliana]
gi|148534289|gb|ABQ85269.1| CRE1 [Arabidopsis thaliana]
gi|148534291|gb|ABQ85270.1| CRE1 [Arabidopsis thaliana]
gi|148534293|gb|ABQ85271.1| CRE1 [Arabidopsis thaliana]
gi|148534295|gb|ABQ85272.1| CRE1 [Arabidopsis thaliana]
gi|148534297|gb|ABQ85273.1| CRE1 [Arabidopsis thaliana]
gi|148534299|gb|ABQ85274.1| CRE1 [Arabidopsis thaliana]
gi|148534301|gb|ABQ85275.1| CRE1 [Arabidopsis thaliana]
gi|148534303|gb|ABQ85276.1| CRE1 [Arabidopsis thaliana]
gi|148534305|gb|ABQ85277.1| CRE1 [Arabidopsis thaliana]
gi|148534307|gb|ABQ85278.1| CRE1 [Arabidopsis thaliana]
gi|148534311|gb|ABQ85280.1| CRE1 [Arabidopsis thaliana]
gi|148534313|gb|ABQ85281.1| CRE1 [Arabidopsis thaliana]
gi|148534315|gb|ABQ85282.1| CRE1 [Arabidopsis thaliana]
gi|148534317|gb|ABQ85283.1| CRE1 [Arabidopsis thaliana]
gi|148534319|gb|ABQ85284.1| CRE1 [Arabidopsis thaliana]
gi|148534321|gb|ABQ85285.1| CRE1 [Arabidopsis thaliana]
gi|148534323|gb|ABQ85286.1| CRE1 [Arabidopsis thaliana]
gi|148534325|gb|ABQ85287.1| CRE1 [Arabidopsis thaliana]
Length = 262
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/264 (60%), Positives = 185/264 (70%), Gaps = 12/264 (4%)
Query: 641 TGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPG 699
TGIGLSISKCLVELMRGQI+F+SRP +GSTF FTAV KC K +K+ E LP
Sbjct: 1 TGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPST 60
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQP 755
FKG+KA+VVD KPVRAAVT+YH+ RLGI V + +S+K A A +NG + K Q
Sbjct: 61 FKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQL 119
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWKPNGHVF-KLPKLILLATNISKDECDKAKAGGFAD 814
D+ILVEKD WIS ED+ +LL+ + NG+V K PKL L ATNI+ E D+AK+ GFAD
Sbjct: 120 DMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFAD 179
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNR 872
TVIMKPLRASMI ACLQQVL RQ P GSS + LL GKKILVVDDN VNR
Sbjct: 180 TVIMKPLRASMIGACLQQVLELRKTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNR 236
Query: 873 MVAAGALKKFGATVECAASAKAAL 896
VAAGALKKFGA V CA S + AL
Sbjct: 237 RVAAGALKKFGAEVVCAESGQVAL 260
>gi|148534309|gb|ABQ85279.1| CRE1 [Arabidopsis thaliana]
Length = 262
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/264 (60%), Positives = 185/264 (70%), Gaps = 12/264 (4%)
Query: 641 TGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPG 699
TGIGLSISKCLVELMRGQI+F+SRP +GSTF FTAV KC K +K+ E LP
Sbjct: 1 TGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCNAINHMKKPNVEHLPST 60
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTA----KNGLTSSEDKFQP 755
FKG+KA+VVD KPVRAAVT+YH+ RLGI V + +S+K A A +NG + K Q
Sbjct: 61 FKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNG-SPLPTKPQL 119
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWKPNGHVF-KLPKLILLATNISKDECDKAKAGGFAD 814
D+ILVEKD WIS ED+ +LL+ + NG+V K PKL L ATNI+ E D+AK+ GFAD
Sbjct: 120 DMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFAD 179
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS--FHQGLLRGKKILVVDDNGVNR 872
TVIMKPLRASMI ACLQQVL RQ P GSS + LL GKKILVVDDN VNR
Sbjct: 180 TVIMKPLRASMIGACLQQVLELRKTRQQH---PEGSSPATLKSLLTGKKILVVDDNIVNR 236
Query: 873 MVAAGALKKFGATVECAASAKAAL 896
VAAGALKKFGA V CA S + AL
Sbjct: 237 RVAAGALKKFGAEVVCAESGQVAL 260
>gi|332709992|ref|ZP_08429948.1| PAS domain S-box protein [Moorea producens 3L]
gi|332351363|gb|EGJ30947.1| PAS domain S-box protein [Moorea producens 3L]
Length = 1738
Score = 279 bits (714), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 212/670 (31%), Positives = 330/670 (49%), Gaps = 78/670 (11%)
Query: 362 EDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ 421
E +F +++ + AEAA AKS+FLAT+SHEIRTPMN ++GM LLLDTDL+S QRD+ +
Sbjct: 973 EQNF-ALEQARRTAEAATQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTDLTSQQRDFVE 1031
Query: 422 TAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
T + G +L+ +IN++LD +KIE+ KLELE FNL +++ L L + K+ K +ELA
Sbjct: 1032 TIRNSGDSLLTIINDILDFSKIESGKLELEEQPFNLITCIEESLDLLAAKAAEKKLELAY 1091
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK-TDAKD---- 536
P ++GD R RQI+ NL+GN++KFT G + V V E ++ + D K+
Sbjct: 1092 LFHPNTPPMIVGDVTRLRQILVNLLGNAIKFTHIGEVLVSVTARELSIGELVDGKETEHS 1151
Query: 537 -----------------------ETLLNGGTEEGVCRSGTGQFNTLSGLEAADG--RNSW 571
TL NG ++ + G Q ++G+ A G N+
Sbjct: 1152 NTANYSYPLASAPDYGKHYSLSFPTLANG--KDYTLQGGFDQTGYINGVRGAKGTQNNTR 1209
Query: 572 DKFKHLIDAEGFQS--NASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQ 629
D + S N +++ S + V+DTGIGIP +R+F F Q
Sbjct: 1210 DNTRVFSPPHPQISSRNPHTARFRSASTQSSIYEIQFVVKDTGIGIPEDRIDRLFQSFSQ 1269
Query: 630 ADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689
DSSTSR YGGTG+GL+I + L +M G+I S+ GS F FT + + + I+
Sbjct: 1270 VDSSTSRQYGGTGLGLAICQRLTTMMGGKIWVESQVGQGSKFYFTVLAKQP-----DPIE 1324
Query: 690 QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSS 749
+ K P +G + ++VD+ + G++ + ++S ++A G
Sbjct: 1325 EPKLPVSQPLLEGKRLLIVDDSATNRTIISEQAKSWGMLTQTAASGREALDWLSQG---- 1380
Query: 750 EDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKA 809
DKF DI ++ D ++ D A + + G LP ++L + N S + +++
Sbjct: 1381 -DKF--DIAIL--DGYMPEMDGFTLATKIRQQSEGQA--LPLVMLSSMNQSDTKHHQSQL 1433
Query: 810 GGFADTVIMKPLRASMIAACLQQVLSTEN---KRQAGRGVPNGSSFHQGLLRGKKILVVD 866
A V+ KP++ S + L QV+S + KR + + + Q +IL+ +
Sbjct: 1434 DIAA--VLNKPIKQSQLHDVLTQVMSGQPIKIKRTPAQHLKLDTEMAQK--HPLRILLAE 1489
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRI 926
DN VN+ +A LK+ G + A + L L S +D MD+QMPEMDG AT+RI
Sbjct: 1490 DNIVNQQLALQLLKRMGYRADVAGNGLEVLQAL-SRQPYDLVLMDVQMPEMDGLTATQRI 1548
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
+ L I+AMTA+ + + CL GMD Y+SKP +
Sbjct: 1549 CEQWPA-------------------HLRPWIIAMTANAMEGDREMCLSAGMDDYISKPIQ 1589
Query: 987 EENLYRELAK 996
L R L++
Sbjct: 1590 VPELVRALSQ 1599
>gi|428214525|ref|YP_007087669.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002906|gb|AFY83749.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1970
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 196/660 (29%), Positives = 323/660 (48%), Gaps = 108/660 (16%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVA--KSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
IV V + +++ +K R +A + A KSQFLA +SHEIRTPMNG+LGM LLL T L+
Sbjct: 1273 IVMVSSEINEL--VKAREQALEAARLKSQFLANMSHEIRTPMNGVLGMTELLLRTQLTEQ 1330
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
Q+D+ +T +I G+ L+ LI+++LD +K+EA ++ L+ F+L L+D + LF+ + +K
Sbjct: 1331 QQDFVKTLKISGENLLTLIDDILDFSKLEAGEMRLDHHEFDLNRTLEDTVDLFTLSAASK 1390
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
IELA V+ VP ++ GD R RQI+TNL+GN++KFTERG + + V+ A+ T ++
Sbjct: 1391 EIELAFLVALDVPRYLKGDASRLRQILTNLLGNAIKFTERGEVVITVNRADSTPEQS--- 1447
Query: 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS 595
LEA DG
Sbjct: 1448 --------------------------LEAPDG---------------------------- 1453
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+ ++L V D+GIGI S +++F F Q D+ST+R YGGTG+GL+I K L +LM
Sbjct: 1454 ---AARLSLTFSVRDSGIGIGPSDCKKLFQSFSQVDTSTTRKYGGTGLGLAICKQLTQLM 1510
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG---FKGLKAVVVDEKP 712
G+I S+ VGS F FT F + E + ++ ++ L +G K ++VD+ P
Sbjct: 1511 GGEIGVESQLGVGSIFWFTVQFERV-ETIPPNLGFTQPSSLDAAGSILRGKKLLIVDDSP 1569
Query: 713 VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG 772
+ V + + G+ V + +A + +++ L D + D
Sbjct: 1570 INRQVVRQQASHWGMEVSEAEDGLEAIKLLRKAVSTGN-----PFTLALLDMQMPKMDGE 1624
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
QL+ P + LI++ + + K GF+ ++KP++ + + CL +
Sbjct: 1625 ILGQLILTDP---LLATTSLIMMTSINESYQARKFLDLGFS-AYLIKPIKEARLLECLIR 1680
Query: 833 VLSTENKRQ----------AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
+S++ A VP G+++ ++ IL+V+D +N+ V L+
Sbjct: 1681 GISSDGYEGSSLSAAESGVAASAVP-GNNWEPEEIKALNILLVEDTRINQKVVLNQLESL 1739
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G +CA + + ALDK+Q ++ FMD QMP +DG++ATR IR E
Sbjct: 1740 GFEADCANNGQEALDKMQVKE-YNLVFMDCQMPVLDGYDATRAIRHREG----------- 1787
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
D H+ ++ +TA + +CL GMD Y++KP ++L R + ++ P
Sbjct: 1788 --------DRRHMVVIGLTAYAMEGDRQKCLAAGMDDYLTKPVSVKDLQRAIRQWTHPSP 1839
>gi|302803079|ref|XP_002983293.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
gi|300148978|gb|EFJ15635.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
Length = 283
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/282 (54%), Positives = 198/282 (70%), Gaps = 11/282 (3%)
Query: 251 IGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDF 310
+GG FD +SLVENLL QL+ +Q I+VNV D+TN S+PL+MYG DG+ + +++F
Sbjct: 1 VGGAFDFKSLVENLLQQLSESQTIIVNVNDVTNKSNPLVMYGLNILDGNE--IEVCQVEF 58
Query: 311 GDSFRKHKMICRYHQKA----STPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFH 366
GD F K +M C +K S WT T F + VI LLV I Y A I KVE+ +
Sbjct: 59 GDPFWKDEMRCDAGEKNLHSHSVVWT---TTFGIVVIVLLVAQIFYAAGNCITKVEEGYC 115
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM-LALLLDTDLSSTQRDYAQTAQI 425
KM++LKVRAE+ADVAKSQFLATVSHEIRTPMNG LG+ +A L STQ+DY TA
Sbjct: 116 KMEDLKVRAESADVAKSQFLATVSHEIRTPMNGALGVHVANAHGIKLDSTQKDYTHTALE 175
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
GK LI INEVLD+AKIE+ ++ELE V F L ILD++L+LFS K+++K IELA +VS+
Sbjct: 176 SGKQLIKHINEVLDQAKIESGRMELETVPFKLHTILDNILTLFSAKNKDKEIELAAYVSE 235
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+VP+ VLG P R I+T+LVGNS+KFT+ GHIFV +HL E
Sbjct: 236 RVPD-VLGHPVRLHLIVTSLVGNSIKFTDSGHIFVSMHLEEN 276
>gi|326516584|dbj|BAJ92447.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 249
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/197 (67%), Positives = 160/197 (81%), Gaps = 1/197 (0%)
Query: 53 MSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSAL 112
+ ++R + ++ +E + MC++RARMLQDQF V+VNHVHAL ILV+TFHY K P AL
Sbjct: 54 LVLHRSLRHNALVKAEEGIVCMCEERARMLQDQFAVSVNHVHALAILVATFHYEKQPPAL 113
Query: 113 DQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAP 172
DQDTFA+YT RT+FERPLLSGVAYA RV+ A RE FERQ G I TMK EPSP +DEYAP
Sbjct: 114 DQDTFADYTARTSFERPLLSGVAYAQRVMHADRETFERQQGWIIKTMKHEPSPAQDEYAP 173
Query: 173 VMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKS 232
V++ QE +S+++ LDMMSGEEDRENILR+RATGKAVLTRPFRL+ S+HLGVVLTFPVY
Sbjct: 174 VIYSQETVSYIEGLDMMSGEEDRENILRSRATGKAVLTRPFRLM-SNHLGVVLTFPVYLV 232
Query: 233 KLPPRSTVEERIKATAG 249
LPP + VE+R+ ATAG
Sbjct: 233 DLPPDAKVEDRVAATAG 249
>gi|226875177|gb|ACO88936.1| cytokinin histidine-kinase receptor 1 [Vitis vinifera]
Length = 235
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 179/250 (71%), Gaps = 16/250 (6%)
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
+LGML +L+D+ L + Q+DYA+TA GK LI+LINEVLD+AKIE+ +LELEAV F+LRA
Sbjct: 1 VLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRA 60
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-ERGHI 518
LD+VLSLFS KS KGIELAV++SD+VPEFV+GDPGRFRQIITNLVGNS+KFT ++GHI
Sbjct: 61 ALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHI 120
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
FV VHLA+ + D +DE L + V S +NTLSG + SW+KFK L
Sbjct: 121 FVSVHLADEVVGPPDLRDEVLRQ--SLNIVHDSSNNSYNTLSGFPVVNRWKSWEKFKKLS 178
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
+ + + I L+V VEDTG+GIP AQ R+FMPFMQADSSTSR Y
Sbjct: 179 CTDSMEETSII-------------KLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTY 225
Query: 639 GGTGIGLSIS 648
GGTGIGLSIS
Sbjct: 226 GGTGIGLSIS 235
>gi|302755686|ref|XP_002961267.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
gi|300172206|gb|EFJ38806.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
Length = 305
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/281 (53%), Positives = 195/281 (69%), Gaps = 5/281 (1%)
Query: 248 AGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESE 307
Y+GG FD +SLVENLL QL+ +Q I+VNV D+ N S+PL+MYG DG+ + +
Sbjct: 20 CSYVGGAFDFKSLVENLLQQLSKSQTIIVNVNDVMNKSNPLVMYGLNILDGNE--IEVCQ 77
Query: 308 LDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLL--VGYILYGAAIHIVKVEDDF 365
++FGD F K +M C +K L L ++ L + I Y A I KVE+ +
Sbjct: 78 VEFGDPFWKDEMRCDAGEKNLHSHRLLCGPPPLELLSLFCWLTQIFYAAGNCITKVEEGY 137
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
KM++LKVRAE+ADVAKSQFLATVSHEIRTPMNG LGML +L+D L STQ+DY TA
Sbjct: 138 CKMEDLKVRAESADVAKSQFLATVSHEIRTPMNGALGMLQMLMDIKLDSTQKDYTHTALE 197
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
GK LI INEVLD+AKIE+ ++ELE V F L IL+++L+LFS K ++K IELA +VS+
Sbjct: 198 SGKQLIKHINEVLDQAKIESGRMELETVPFKLHTILENILTLFSAKDKDKEIELAAYVSE 257
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+VP+ VLG P R QI+T+LVGNS+KF + GHIFV +HL E
Sbjct: 258 RVPD-VLGHPVRLHQIVTSLVGNSIKFPDSGHIFVSMHLEE 297
>gi|428215970|ref|YP_007089114.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004351|gb|AFY85194.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1277
Score = 276 bits (705), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 215/643 (33%), Positives = 314/643 (48%), Gaps = 87/643 (13%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+++ + AE A+ AKS+FLAT+SHEIRTPMN ++GM LLLD +L+ QRDY T +
Sbjct: 704 QSLKQARESAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMNLTEEQRDYIDTIRT 763
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G AL+ +IN++LD +KIE+ KLELE FNL+ +++ L LF+ K+ KG+EL +
Sbjct: 764 SGDALLTIINDILDFSKIESGKLELENHPFNLQTCIEEALDLFAPKAAEKGLELLYQIEV 823
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+ P+ ++ D R RQI+ NL+GNSVKFT G I V V+ T + AK T L
Sbjct: 824 RTPQKIISDVTRLRQILVNLIGNSVKFTHTGEIVVSVNATRLTSPTSQAKLATPL----- 878
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
+ G + SGL+ S D+ + A FQ
Sbjct: 879 ---VSADPGNGDKPSGLQP----RSPDQSPPV--AYEFQ--------------------- 908
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ DTGIGIP ++R+F+PF Q D+ST+R +GGTG+GL+I K L ELM G++ S
Sbjct: 909 FSIRDTGIGIPSHRRDRLFLPFSQVDASTTRQFGGTGLGLAICKRLSELMGGRMWIESEE 968
Query: 666 QVGSTFSFTAV-FGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
VGSTF FT + K D QS L KG K ++VD+ +
Sbjct: 969 GVGSTFYFTLIALSNPKANHSPDYHQSDRSLL----KGKKLLIVDDNATNRQILLKQTQN 1024
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
G+ ++S +A L + F I+ D + D A + +P
Sbjct: 1025 WGMFPHQAASGSEALD-----LLEVSNHFDLAIL----DMQMPEMDGLTLAARIQSQPQW 1075
Query: 785 HVFKLPKLILLATNISKDECDKAKAGG--FADTVIMKPLRASMIAACLQQVLST------ 836
L ++ T++ K E + FA I KP++ S + L Q+L
Sbjct: 1076 QSLPL----VMFTSMGKPESLEVDGISIKFA-AFINKPIKQSQLYNTLIQILDETPPSSP 1130
Query: 837 ---ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
E Q+ + + N Q LR IL+ +DN VN+ VA L + G + A +
Sbjct: 1131 VKYEPLPQSKKSLINADMAKQIPLR---ILLAEDNIVNQKVALRILDRMGYRADVANNGL 1187
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
L+ LQ +D MD+QMPEMDG EATR+I + K E + +L
Sbjct: 1188 EVLEALQR-LSYDVILMDVQMPEMDGLEATRQICK---KYGEGL--------------QL 1229
Query: 954 HLP-ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
+ P I+AMTA+ + + CL GMD Y++KP E L + L+
Sbjct: 1230 NKPKIIAMTANAMQGDREICLAAGMDDYITKPIRLEELIKVLS 1272
>gi|372272319|ref|ZP_09508367.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
Length = 1153
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 216/646 (33%), Positives = 306/646 (47%), Gaps = 119/646 (18%)
Query: 366 HKMQELKVRAEA--ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
++ Q ++ R EA + AKS+FLA +SHEIRTPMNGILGML L+LD DL Q+DY + A
Sbjct: 477 YESQLVQARQEALQSTQAKSEFLANMSHEIRTPMNGILGMLELVLDADLPPEQKDYIRIA 536
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
G+ L+AL+N +LD +K+EA K+ELE + FNLR L++ LF+ +++ KG+E+A +
Sbjct: 537 NSSGQTLLALLNSILDLSKVEAGKMELEHLDFNLRETLEETTKLFAPQAQGKGLEIAALI 596
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
D VPE+ GDP R RQ+ITNL+GN++KFT++G I + V +A L+ G
Sbjct: 597 DDSVPEYANGDPTRLRQVITNLLGNAIKFTDQGEITLAAD------VTQEADQSWRLHIG 650
Query: 544 TEE-GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
+ G+ + Q G ADG + GG
Sbjct: 651 IRDTGIGIAADAQERIFEGFTQADGSTTR-----------------------RYGG---- 683
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TG+G+ LS + + M GQI
Sbjct: 684 --------TGLGLTLS------------------------------RRIATRMGGQIWLE 705
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
S GSTF FTA KE I +EDL +GL+A++VD+K + Q
Sbjct: 706 STLDQGSTFHFTARLKPAKEPEALFI---PNEDL----RGLRALIVDDKVTNRVILQRFC 758
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDK----FQPDIILVEKDCWISGEDSGFNAQLL 778
+ GI + + S ++ AK L + + K D+++ + D NAQL
Sbjct: 759 DAWGIYHQSADS--GVNALAKLELAAEQGKAFDCVLSDMMMPDMDGVEVARQIHANAQLG 816
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
D KL+L+ + + DKA+ GF D ++ KP+ + L+QVL
Sbjct: 817 DL----------KLLLITSYTGRGLRDKARLAGF-DRLLPKPIGRRELHDALEQVLLGPA 865
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ A +G+ H G +IL+ +DN VNR VA+ L+KFG TV A + AL++
Sbjct: 866 QTPAS-APASGALEHSATPGGLRILLAEDNQVNRQVASTHLEKFGCTVVSAKNGAEALER 924
Query: 899 L-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
Q P FD MD QMP MDG EATR IRQ E G D T PI
Sbjct: 925 FCQQP--FDLVLMDCQMPVMDGLEATRAIRQRE---------GEQGSDST--------PI 965
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
+AMTA +C GMDG + KPF E LY+ L + KP+
Sbjct: 966 IAMTAFSSEQNLADCRAAGMDGKIGKPFRPEALYQLLLEHTARKPV 1011
>gi|344941765|ref|ZP_08781053.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262957|gb|EGW23228.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 1247
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 204/620 (32%), Positives = 307/620 (49%), Gaps = 91/620 (14%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
K++FLA +SHEIRTPMNG+LGML LL DT LS Q D A ++L+ +IN++LD +
Sbjct: 533 KTEFLANMSHEIRTPMNGVLGMLDLLQDTQLSREQWDLIDIAANSAESLLTIINDILDFS 592
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA K+ELE + FNL ++++V +L S ++ +KG+EL F+ +P GDP R RQ+
Sbjct: 593 KLEAGKIELEQIEFNLPDLVEEVCTLLSSRAHSKGLELNCFLPTDLPLRWQGDPTRIRQV 652
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+TNL+GN+VKFTE+G + V V ++++ TDA S G+F
Sbjct: 653 LTNLIGNAVKFTEQGEVSVTVRVSKKD--DTDAA---------------SAPGRF----- 690
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
AAD + L V DTGIGI AQ
Sbjct: 691 --AADTPSL-------------------------------TILRFEVVDTGIGITAEAQA 717
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
R+F F QADSSTSR YGGTG+GLSISK LV LM G I S G+ F FT
Sbjct: 718 RLFQAFSQADSSTSRRYGGTGLGLSISKDLVMLMNGNIGVESALGQGANFWFTLPLAAVD 777
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
+++ F + ++VD+ + ++L+ G + S D
Sbjct: 778 ---------NEAPAPQANFCDKRVLIVDDNATNRMILTHYLSNWGFTL----SEADNGPA 824
Query: 742 AKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS 800
A + L ++ + +P D++L D + G D A+ + P + P+++L + +I
Sbjct: 825 ALDELEAAVLRNEPYDLLL--SDMQMPGMDGFALARAIIENP--AIADTPRILLSSGSIG 880
Query: 801 KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL--R 858
+ A GF + ++KP+R S + + L ++ A P + LL
Sbjct: 881 SQV--ERLASGFTQS-LLKPVRQSQLFDAVIDALQLPGQKNA----PVEKEKKEVLLDYS 933
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
K++LVV+DN VN+ V L KF + A + + ALD+L+ +D FMD QMP MD
Sbjct: 934 SKRVLVVEDNKVNQKVILSQLAKFQLKPDLANNGQVALDQLER-QAYDLVFMDCQMPIMD 992
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G+EATR +R+ E G+ + +L ++A+TA ++CL GMD
Sbjct: 993 GYEATRILREREI--------AGACPEHGRGSGKLRTSVIALTAHASAGEREKCLSAGMD 1044
Query: 979 GYVSKPFEEENLYRELAKFF 998
Y+SKP +L LA++
Sbjct: 1045 DYLSKPASRSDLAVVLARWL 1064
>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
Length = 833
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 205/648 (31%), Positives = 307/648 (47%), Gaps = 121/648 (18%)
Query: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
+E K AEA+ K+QFLA +SHE+RTPM+G+LGML+LLL+T LSS Q+ Y + A G
Sbjct: 292 EENKRVAEASAEDKAQFLANMSHELRTPMHGVLGMLSLLLETQLSSDQQHYVEVAHESGN 351
Query: 429 ALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVP 488
L+ L+N VLD +KIE KL LE V F+LR +++V+ + E + +K +EL V+ + VP
Sbjct: 352 ILLELLNNVLDLSKIEHNKLALERVEFDLRQAIEEVVVILGESANSKLLELVVWQNASVP 411
Query: 489 EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
V+GDP R +QI+ NL+GN++KFT +GH+ + +++ T GV
Sbjct: 412 SRVVGDPIRLKQIVFNLLGNAIKFTTQGHVEISY---------------AVISENTRRGV 456
Query: 549 CRSGTGQFNTL-SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
S F + + G W +F
Sbjct: 457 VDSAEADFQAQEQDVSESVGDELWIRFD-------------------------------- 484
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTG+G+ QE++F F QADS+T+R YGG+G+GL++ K +V+LM G I S
Sbjct: 485 VSDTGVGLSEDVQEKIFEAFTQADSTTTRVYGGSGLGLALCKQIVKLMGGAIGVESELGK 544
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL-----KAVVVDEKPVRAAVTQYHL 722
GS F F FGK + + P + + K +V+D K V A +++L
Sbjct: 545 GSKFWFEIPFGKTPQTL-------------PALREIALNSNKVMVLDGKKVSAEAMRHYL 591
Query: 723 NRLGIMVKMSSSIKDASSTAKNG------LTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
L + ++++ D + ++G L S D Q I + K + E N
Sbjct: 592 AELEVDCVLAANEFDVLTLLESGGALYFRLLISLDTKQDTIYHLLKAPTVRRELDDANIV 651
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ F+L K + GF V+ KP+R S + +
Sbjct: 652 FYGSIQQRNDFRLLK----------------EYAGF--DVLTKPIRLSQLRRAFGFI--- 690
Query: 837 ENKRQAGR-GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
N AG V +G+S +ILVV+D+ +NR VA G LKK G E A + + A
Sbjct: 691 GNVHVAGALPVVHGAS-------SLRILVVEDHPINRQVAVGLLKKLGFVPEVAENGEIA 743
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L +Q+ +D MD+QMP MDG+ TR +RQ E + +
Sbjct: 744 LKMMQN-QAYDLILMDLQMPVMDGYSTTRTVRQWEREGRRRT------------------ 784
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
PI+AMTA + + C + GMD Y++KP + E L L K+ KPL
Sbjct: 785 PIIAMTAHALSGDRERCAEAGMDDYLAKPVKAELLMAVLGKWL-PKPL 831
>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 847
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 203/643 (31%), Positives = 299/643 (46%), Gaps = 133/643 (20%)
Query: 375 AEAADVA------KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
A A DVA KS FLAT+SHEIRTPMNG++G+ LL TDL QR YA+
Sbjct: 320 AAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEATDLDERQRQYAEGVSSAAN 379
Query: 429 ALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVP 488
AL+ +IN++LD +K+EA +L+LE + F+L ++++V L +E +++KG+EL + S ++P
Sbjct: 380 ALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIAEPAQSKGLELLAYCSPELP 439
Query: 489 EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
+ GDP R RQ++ NL N+ VK A+ E L+ E +
Sbjct: 440 TCLRGDPSRLRQVLLNLASNA--------------------VKFTARGEVLVRASLEASL 479
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608
DG + G V + V
Sbjct: 480 ----------------QDGPEA--------------------------GAEAGVVVRFEV 497
Query: 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVG 668
DTGIG+ + +ER+F PF QADSST+R YGGTG+GL+IS+ LV M GQI SRP +G
Sbjct: 498 TDTGIGVEEADRERLFEPFSQADSSTTRRYGGTGLGLAISEHLVTAMGGQIGVDSRPGLG 557
Query: 669 STFSFTAVFGKCKEYVFEDIKQSK---SEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
STF FT G + ED+ S +ED+ GL+ +VVD+ + L
Sbjct: 558 STFWFTLPLG-----LAEDLSASTPRGTEDI----AGLRVLVVDDNQTNRMILHDQLTAW 608
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
G+ V ++ +D + D+ ++ D + D A + P
Sbjct: 609 GLHVDLA---EDGPHALAALADAHRTHHPFDLAVL--DLCMPDMDGLELAHRISSDPT-- 661
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ---- 841
+ LL + + D A+A G + + KP++ S + A LQ ++ T
Sbjct: 662 -LTGLAMALLTSGGEISQTD-ARAVGITAS-MTKPVQLSRLRATLQDIIGTRRPHTPLHI 718
Query: 842 ----AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
AGRG +ILVV+D +N++VA G L+ G T + A + AL
Sbjct: 719 PTTPAGRG---------------RILVVEDGEINQLVAVGILEHLGYTTDVADNGVTALS 763
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
+ +DA MD+QMP MDG++ATR IR++E + H PI
Sbjct: 764 AMGRTR-YDAVLMDVQMPGMDGYQATREIRRLEGDVH-------------------HTPI 803
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+AMTA + D CL GMD Y+SKP L L+++ S
Sbjct: 804 IAMTASATNDDRDRCLAAGMDDYISKPVNPHTLETVLSRWATS 846
>gi|428215820|ref|YP_007088964.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004201|gb|AFY85044.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1860
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 204/626 (32%), Positives = 307/626 (49%), Gaps = 105/626 (16%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLAT+SHEIRTPMN ++GM LLLDT L++ QR++ +T + G L+ +IN++LD +
Sbjct: 1155 KSEFLATMSHEIRTPMNAVIGMTGLLLDTPLNADQREFVETIRTSGDGLLTIINDILDFS 1214
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ K++LE FNLR +++ L L + K+ K +ELA ++ + PE ++GD R RQI
Sbjct: 1215 KIESGKMDLEEHPFNLRTCIEECLDLVASKAAEKQLELAYLLAPQTPEGIIGDVTRLRQI 1274
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+ NL+ N+VKFT+ G V V+ T V+ DA+ + TE GV
Sbjct: 1275 LVNLLSNAVKFTQEGETIVAVN---GTFVQ-DAQFGNPMATATEGGV------------- 1317
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
+Q + S+ +DTG+GIP +
Sbjct: 1318 ---------------------YQIHFSV-------------------KDTGVGIPPDRMD 1337
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
R+F F Q DSST+R YGGTG+GL+I+K L ELM G + S+ VGSTF FT
Sbjct: 1338 RLFKSFSQVDSSTTRKYGGTGLGLAIAKRLSELMGGTMWVESQVGVGSTFHFTIQATATS 1397
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS---IKDA 738
E+ + ED P G ++VD+ NRL I+ + + S I A
Sbjct: 1398 EFA-----SATPEDEVPQLTGKHLLIVDDNAT---------NRL-ILTRQAQSWGMIPYA 1442
Query: 739 SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATN 798
+++ GL ++ L D + D A + P G +LP ++L T+
Sbjct: 1443 AASGPEGLAQLQETADTRFDLAILDMQMPEMDGLALAAAIRQLPGGD--RLPLIML--TS 1498
Query: 799 ISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL- 857
+ + AG + KP++ S + L + S + R+ R V SF + +
Sbjct: 1499 LGWQPVSREAAGIDFAAFLSKPIKQSQLFDILIGIFSRRSNRKDSR-VHRVPSFPKQSIP 1557
Query: 858 ----RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
R KIL+ +DN VN+ VA L++ G + A++ A+ L +D MD+Q
Sbjct: 1558 LKSDRPLKILLAEDNVVNQKVALRILERMGYRADVASNGLEAIAALNR-QSYDVILMDVQ 1616
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD--ELHLP-ILAMTADVIHATFD 970
MPEMDG EATR I + + T +RD + P I+AMTA+ + +
Sbjct: 1617 MPEMDGLEATRHICK----------------EWTLRRDISPMGRPWIIAMTANAMQGDRE 1660
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAK 996
CL+ GMD Y+SKP E L + LA+
Sbjct: 1661 ICLQAGMDNYISKPIRMEALAQALAE 1686
>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1209
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 201/640 (31%), Positives = 309/640 (48%), Gaps = 113/640 (17%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
K QE +A A AKS+FLA +SHEIRTPMN I+GM L +T+L+ Q++Y Q
Sbjct: 533 EKYQEAARQAREASRAKSEFLANMSHEIRTPMNAIMGMTELAGNTELTPEQKEYLSIIQN 592
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
++L+AL+N++LD +KIEA KL+LE + F+LR + + + + + KG+EL V V
Sbjct: 593 SSESLLALLNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAMLAHQKGVELVVRVEP 652
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+ + GDP R RQ++ NLVGN++KFT++G + V+V LA A +E L + +
Sbjct: 653 DMEDGFKGDPDRLRQVLVNLVGNAIKFTQQGEVQVEVRLA--------AAEEMLQHAARD 704
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
EG LS L+ ++
Sbjct: 705 EGY----------LSKLQ----------------------------------------IL 714
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V DTG GI QE +F F+QAD S+ R YGGTG+GLSIS LVE+M+G+I S P
Sbjct: 715 FRVVDTGSGIAWDKQEGIFEAFVQADGSSRRKYGGTGLGLSISSRLVEMMKGRIWMQSEP 774
Query: 666 QVGSTFSFTAVF----GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
GSTFSF KE V D+ Q +GLK ++VD+ A + +
Sbjct: 775 GRGSTFSFVLPLEPGEDAQKEQVLGDVSQ---------LQGLKVLIVDDNANNAGILEES 825
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLD 779
L + ++ S ++ S+ D FQ ++L++ E +G + + D
Sbjct: 826 LRYWWMQPAIAQSGGQGLKMLEHA-ASANDPFQ--VMLLDMHM---PEMNGLDVLEAMQD 879
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS---- 835
P+ P +++L + + K + G + KP++ S + + +S
Sbjct: 880 MDPSVK----PVILVLTSGAQLGDSRKLRTYGVK-AYLFKPVKQSKLLGAILDAVSGGMD 934
Query: 836 -TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ + Q G+G LR KIL+ +DN VN+++A L + G V +
Sbjct: 935 HEQEQAQEGKGEEIDG------LRPLKILLAEDNEVNQLLAVRILSQEGHQVRGVHDGRE 988
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A+D L + FD MD+QMP MDG EATR IR E + +G L
Sbjct: 989 AVDAL-ARENFDLVLMDVQMPVMDGLEATRLIRAREQE------------EGL-----LR 1030
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
P++A+TA + ++CL+ GMD YV KP + +L++E+
Sbjct: 1031 TPVIAITAHALKGDREKCLEAGMDSYVQKPIRKADLFKEI 1070
>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1702
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 199/632 (31%), Positives = 312/632 (49%), Gaps = 80/632 (12%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
F + Q+ + A A KS FLA +SHEIRTPMNG++GM LLL T+L+ Q D+ QT +
Sbjct: 1006 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQIDFVQTLK 1065
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+ G+ L+++IN++LD +K+EA ++ LE + FNL +++VL L + ++ KGIE+ +
Sbjct: 1066 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1125
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
VP + GD R RQI+TNL+ N++KFTE G + ++V DA + L
Sbjct: 1126 TDVPLQIKGDAARLRQILTNLINNAIKFTEAGEVVIEV---------ADASNPGL----- 1171
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
L A+D + +K + L ++N S++ L
Sbjct: 1172 -----------------LAASDNQKILEKIEPL----KIENNDSML-------------L 1197
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
+ V DTGIGI Q+++F F Q D+ST+R YGGTG+GL+ISK LVELM GQI S
Sbjct: 1198 LFKVTDTGIGIATEDQKKLFQSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVEST 1257
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
P GSTF FT KE + + +L G K ++ +KP V L R
Sbjct: 1258 PGQGSTFWFT--VPTVKEN-LTGVGTACEVNLETVLAGRKMLIASDKPTVRKV----LVR 1310
Query: 725 LGIMVKMS-SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
+ ++ M +++ T + + DI+LV D + +G +L +P
Sbjct: 1311 MAVVWGMEVEEVENGWMTIASLYKAVSLNSPYDIVLV--DIQLPEMVAGSLERLRISEP- 1367
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---NKR 840
+ K ++L + E + GF+ + KP++A + CL ++ ++
Sbjct: 1368 --AMQQTKWVVLTSMTQLAEAKRLVDSGFSG-YLTKPVKAHRLFDCLANAIAPSTLIDES 1424
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
QA S+ L KIL+V+D +N+ V L+ G + A + AL +
Sbjct: 1425 QANPTSNRASAIDNRDLASLKILLVEDTPINQKVGLNQLRVLGCAADVANNGAEAL-SMV 1483
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP--IL 958
+ +D MD QMP +DG+EAT ++R +E + D A + E H ++
Sbjct: 1484 ALKKYDIVLMDCQMPVLDGYEATLQLRGLE------------AADLAAGKMESHQKTVVI 1531
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
AMTA+ + ++CL GMD Y+SKP E L
Sbjct: 1532 AMTANALKGDREKCLAAGMDDYISKPISIEKL 1563
>gi|254409902|ref|ZP_05023682.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182938|gb|EDX77922.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1258
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 197/633 (31%), Positives = 296/633 (46%), Gaps = 101/633 (15%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A AA AKS+FLAT+SHEIRTPMNG++GM LLLDT L+S Q+++ T + G L+ +I
Sbjct: 541 ALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQLTSQQQEFVTTIRHSGDTLLTII 600
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ KLELE V F+L+ +++ L L + K+ +K +ELA ++ + P ++GD
Sbjct: 601 NDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIGD 660
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R RQI+ NL+ N+VKFT+ G + V V+ AE+
Sbjct: 661 VTRLRQILVNLLSNAVKFTQSGEVIVSVN-AEKL-------------------------- 693
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
W++ ++ S+ + + + + V+DTGIG
Sbjct: 694 ------------DYEQWER---------PETKTSLTPRITPSVATPHYRIQFAVKDTGIG 732
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
IP R+F PF Q DSST+R YGGTG+GL+I K L E+M G + S+ +GSTF FT
Sbjct: 733 IPPERLNRLFQPFSQVDSSTTRKYGGTGLGLAICKQLCEMMGGTMWVESQEDIGSTFYFT 792
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
V +Q+ ++ G + ++VD+ + G+ + S
Sbjct: 793 LVVP-----ADPSTQQNTNQVCRLELDGQRLLIVDDNDTNRKILMRQAQVWGMECYAAQS 847
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
A G ++F I+ D + D AQ + P L L
Sbjct: 848 GVQALDWLHQG-----ERFDLAIL----DMQMPEMDGVTLAQKIRKLPGCQTLPLVMLSS 898
Query: 795 LATNISKDECD-KAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
L + D D K GF + KP++ S + L Q ++ G+P H
Sbjct: 899 LG-ELQVDTPDVKQTFAGF----LTKPIKQSQLCDVLMQAMA---------GIPIKVKIH 944
Query: 854 Q----------GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
G +IL+ +DN VN+ VA L++ G + A + L+ LQ
Sbjct: 945 SAKKPDIDAKMGERLPLRILLAEDNPVNQQVALHLLQRMGYRADVAGNGLEVLEALQR-Q 1003
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
+D FMD+QMPEMDG EA+RRI Q +DG + I+AMTA+
Sbjct: 1004 PYDVVFMDVQMPEMDGLEASRRICQ-----------EWCDLDGKTQSQRPR--IIAMTAN 1050
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ + C++ GMD Y+SKP E L L K
Sbjct: 1051 AMVGDREMCIEAGMDDYISKPIRIEELVEALKK 1083
>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
Length = 844
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 195/632 (30%), Positives = 300/632 (47%), Gaps = 101/632 (15%)
Query: 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430
L + E A +AKS+FLA +SHE+RTPMNG++GM ALLLDT+L+ QR+Y + + A+
Sbjct: 176 LNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDTELTDEQREYVEATRSSADAM 235
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
+ +IN++LD +KIE+ KL+LE+ F L +++ L L + K+ K ++LA V D +P+
Sbjct: 236 LTIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDAIPKI 295
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR 550
++GD R RQI+ NL+GN+VKFT G +F++V A
Sbjct: 296 LVGDVTRLRQILVNLIGNAVKFTNEGEVFIQVKPAP------------------------ 331
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
KH D + +S +SI G + L V D
Sbjct: 332 ------------------------KHFNDRD--RSASSIT-------GPDMWMLQFSVRD 358
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TG+GIP+ Q R+F F Q D+ST+RHYGGTG+GL+I K L ELM G I S GST
Sbjct: 359 TGVGIPIDKQHRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGST 418
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
F FT + + V Q + P G + ++V++ + + + G++
Sbjct: 419 FHFT-IQARATASVIPPAWQQ----IQPQLAGKRVLIVEDNATNRQILSHRCRQWGMLPD 473
Query: 731 MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLP 790
+++ + A N K+ IL D + G D AQ + + NG+
Sbjct: 474 EAANAEKALEMVAN------QKYYDAAIL---DVQLPGFDGIKLAQAIRQRLNGNSIS-- 522
Query: 791 KLILLATNISKDECDKAKAGGFADTV-IMKPLRASMIAACLQQVLSTENKRQ-AGRGVP- 847
LL + + D +A T+ + KP+R S + L + LS + +R+ +P
Sbjct: 523 ---LLLLSSVRLRSDDTRAAELGITIFVHKPIRPSQLLQALYRGLSLQIQREKKAPALPC 579
Query: 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDA 907
SSF +IL+ DDN +N+ V L++ G + A + L L +D
Sbjct: 580 MDSSFANRF--PLRILLADDNPINQKVGLNVLRRLGYRADVANNGLEVLRALDR-QPYDI 636
Query: 908 CFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967
+D+QMPE+DGFE T IR+ KR ++AMT + +
Sbjct: 637 ILLDVQMPELDGFETTSSIRERWP---------------LGKRPR----VVAMTGNALLG 677
Query: 968 TFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
++CL GMD Y+SKP L L ++ K
Sbjct: 678 DREKCLDAGMDDYISKPIRIGELQSALERWAK 709
>gi|334117454|ref|ZP_08491545.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333460563|gb|EGK89171.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1830
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 219/696 (31%), Positives = 323/696 (46%), Gaps = 145/696 (20%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AKS+FLAT+SHEIRTPMN ++GM LLLD +L+ QRD+ +T + G AL+ +I
Sbjct: 1035 AEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTII 1094
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ KL+LE F L+ +++ L L + ++ KG+ELA F+ D VP+ +LGD
Sbjct: 1095 NDILDFSKIESGKLDLERSPFELQNCIEESLELLAPRASEKGLELAYFIDDSVPKNILGD 1154
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R RQI+ NL+GN+VKFTE G I V C
Sbjct: 1155 VTRLRQILVNLLGNAVKFTESGEIVV---------------------------CC----- 1182
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG----SEDVTLMVCVED 610
T +E +S D+ L +A N G S + V+D
Sbjct: 1183 ---TARQIEQVAANSSPDRINILAP-----------QPLAINQGELARSRQYEIQFAVQD 1228
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIGIP +R+F F Q D+ST+RHYGGTG+GL+IS+ L ++M G + VS+ GS+
Sbjct: 1229 TGIGIPPDRMDRLFKAFSQVDASTTRHYGGTGLGLAISQRLSDMMGGTMWVVSQVTPGSS 1288
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV-------------DEKPVRAA- 716
S AV + +S +E PP G ++ +++P AA
Sbjct: 1289 KSQPAVSAIGQSIA----GRSPAEFTPPSISGSGSIFYFTVTAEANDIRAEEKRPEFAAG 1344
Query: 717 ----VTQYHLNRLGIMVKMSSS---IKDASSTAKNGLTSSEDKFQPDIILVEKD------ 763
+ ++H ++++ + S I A ++ L + D+ ++ +
Sbjct: 1345 KRLLIVEHHAINRQVLIRQAESWGMIPVAVTSGAEALEIIKGDSPLDLAILAMNLPDMDG 1404
Query: 764 CWISGEDSGFNAQLLD----WKPNGHVFKLPKLIL---LATNISKDECDKA--KAGGFAD 814
++ E F L PNG V K+ L L T +SK E K
Sbjct: 1405 VALAVEIRKFELSNLSGGDGLNPNGIVKNTRKIALPLVLFTYLSKAEVWKKLETTEVHFS 1464
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRG-VPNGSSFHQGL----------------- 856
+ KPL+ S L QV R +GRG V N ++ GL
Sbjct: 1465 AFLTKPLKQSQFYNVLLQVFGYVTGR-SGRGEVSNVATLTSGLKYFENSQEQHRVQRTPA 1523
Query: 857 -LR-------GK--------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
LR G+ +IL+ +DN VN+ VA L + G + AA+ L+ L+
Sbjct: 1524 VLRQVAANSAGQDAANSSQIRILLAEDNVVNQKVATHLLDRIGYRADIAANGLEVLEALK 1583
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+D MD+QMP MDG EATRRI Q E AN++ I+AM
Sbjct: 1584 R-QSYDVVLMDVQMPNMDGLEATRRICQ-EWPANKKPR------------------IIAM 1623
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
TA+ + ++CL+ GMD Y++KP E L L+K
Sbjct: 1624 TANAMQGDREKCLEAGMDDYITKPVRREELAIALSK 1659
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
GK++L+V+ + +NR V + +G S AL+ ++ D + + +P+MD
Sbjct: 1344 GKRLLIVEHHAINRQVLIRQAESWGMIPVAVTSGAEALEIIKGDSPLDLAILAMNLPDMD 1403
Query: 919 GFEATRRIRQMESKANEQMMNGGSSV--DGTAKRD-ELHLPILAMT----ADVIHATFDE 971
G IR+ E ++GG + +G K ++ LP++ T A+V E
Sbjct: 1404 GVALAVEIRKFELSN----LSGGDGLNPNGIVKNTRKIALPLVLFTYLSKAEVWKKL--E 1457
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFF 998
+ +++KP ++ Y L + F
Sbjct: 1458 TTEVHFSAFLTKPLKQSQFYNVLLQVF 1484
>gi|302786022|ref|XP_002974782.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
gi|300157677|gb|EFJ24302.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
Length = 823
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 208/649 (32%), Positives = 312/649 (48%), Gaps = 99/649 (15%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ E + +AE+A A+S+FLA +SHEIRTP+NG++GM ++LLDTD + Q + +T + G
Sbjct: 256 LAEARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLLDTDPTPDQEECLETIRTSG 315
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+ L+++IN++LD +KI+A KL + V NLR++++DV S+ + + KG+EL V
Sbjct: 316 ECLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDS-- 373
Query: 488 PEFVLG-DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
P F + D R RQ++ NL+GNS KFT GHI V V L ++ K T+
Sbjct: 374 PFFAVSVDTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLK--------ATDF 425
Query: 547 GVCRSGTGQFNTLSGLEA-ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
CRS + N+ G E +D KH+ E F+ + S
Sbjct: 426 WECRSCSKDVNSFKGRELDSDA-------KHVKPVEYFKFSIS----------------- 461
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
D+GIGI +F F Q D TS YGGTG+GL++SK LVELM G+I SR
Sbjct: 462 ----DSGIGIAEDKLGLLFEKFSQCDQLTSNMYGGTGLGLAVSKSLVELMGGEIVVESRE 517
Query: 666 QVGSTFSFTA-----VFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
VGSTFSF+ V + + + S+ + P + +V+D + V
Sbjct: 518 GVGSTFSFSIPLEIDVVSEKNRHQVPLLYSSRFQARP------RILVIDNHKITRQVMCE 571
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
+ GI + S + A N + D +LVE F + L
Sbjct: 572 QIESWGIECQCSGDVASALKLLANRFHVA----VVDNVLVET----------FQKK-LQI 616
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ---VLSTE 837
K F K ILL + +A GF+ T + +PLR S + L + +L +
Sbjct: 617 KRIAEEFPGTKFILLKP--VGHRVNAQEAYGFSCT-LSRPLRQSTLKDALLKTFNLLGFK 673
Query: 838 NKRQAGRGVPNGSSFHQG-----LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ +A R S+ + R K+LVV+DN VN+MVA L G TV+ A +
Sbjct: 674 SFEEASRPALASSNRSKAGDKAQTRRHPKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNG 733
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A+ + P +D FMD MP +DGF+A+R IR +
Sbjct: 734 QEAVSIVDKPVEYDLIFMDCHMPVLDGFQASRLIRSKQKLT------------------- 774
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
PI+A+TA + + ++CL+CGMD YV KP ++ L R L K+ K
Sbjct: 775 ---PIVALTAATMESELEKCLECGMDDYVRKPCTKQELQRVLHKWLDWK 820
>gi|428210022|ref|YP_007094375.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
gi|428011943|gb|AFY90506.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
Length = 1053
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 191/626 (30%), Positives = 302/626 (48%), Gaps = 93/626 (14%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEAA+ AKS FLA +SHEIRTPMNG++GM LLL+T L+ Q+D+ T + G AL+ +I
Sbjct: 325 AEAANQAKSAFLANMSHEIRTPMNGVIGMTGLLLNTSLTPQQQDFVDTIRRSGDALLTII 384
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ KL+LE F+LR +++ L + + ++ +K +ELA + + P ++GD
Sbjct: 385 NDILDFSKIESDKLDLEEQPFDLRVCIENSLDVLAPQAADKNLELAYLLDPQTPATIMGD 444
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R QI+ NL+ N+VKFTE G + V ++ + L G +E + ++
Sbjct: 445 VTRLCQILVNLLSNAVKFTEHGEVVV-------SVTTKEINSSEYLEGRKKEQLPQTADY 497
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
T ++ A V+DTGIG
Sbjct: 498 LMPTFYEIQFA------------------------------------------VKDTGIG 515
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
IP +R+F F Q D+ST+R YGGTG+GL+IS+ L +M G++ S+ VGSTF FT
Sbjct: 516 IPSDRMDRLFKSFSQVDTSTTRQYGGTGLGLAISQRLSVMMGGRMWVESQVGVGSTFYFT 575
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
+I Q +S + P G + ++VD+ + G++ + ++S
Sbjct: 576 IAVAA------PNIVQHESSCILPQLHGKRLLIVDDSATNRKILMLQAQSWGMLPRAATS 629
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+A + G D F ++ D + D A + N KLP +IL
Sbjct: 630 GAEALEWLQRG-----DPFDLAVL----DMQMPQMDGLSLATTIHQHSNYR--KLPLVIL 678
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK-RQAGRGVPNGSSFH 853
T++ K E + KP++ S + L Q+LS +++ Q +P S+
Sbjct: 679 --TSMGKPEVASQSTAVKLSACLTKPVKQSQLYNVLLQILSEQSQPSQVAPFLPKSSTLS 736
Query: 854 QGLLRGK--KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
+ + IL+ +DN VN+ VA L++ G + A + L LQ +D MD
Sbjct: 737 AQIAQTHPLNILLAEDNTVNQKVALLMLQQMGYRADVANNGLEVLAALQR-QPYDVVLMD 795
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-ILAMTADVIHATFD 970
+QMPEMDG EA R+I Q + H P I+AMTA+ + +
Sbjct: 796 VQMPEMDGLEAARQICQ--------------------RWFPPHKPRIVAMTANAMQGDRE 835
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAK 996
CL GMD Y++KP + E+L + L++
Sbjct: 836 ACLYAGMDDYLTKPVKIEHLAQALSQ 861
>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
Length = 1629
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 217/688 (31%), Positives = 318/688 (46%), Gaps = 109/688 (15%)
Query: 324 HQKASTPWTALTTAFFLF--VIGLLVGYILYGAAIHI-VKVEDDFHKMQELKVRAEAADV 380
H K L +AF + V G + Y + I I KVE + + +E +RA A
Sbjct: 870 HMKTKQQIPVLCSAFTIKHPVTGKPMAYAAISSDITIRKKVERELIEAREEALRAAQA-- 927
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
K++FLA +SHEIRTPMN ++GM LLLDT L++ QR+Y +T + G AL+ +IN++LD
Sbjct: 928 -KAEFLANMSHEIRTPMNAVIGMTGLLLDTPLTAEQREYVETIRSSGDALLTVINDILDF 986
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIE+ KLELE F LR +++ + +FS + K +EL F+ +KVP V GD R RQ
Sbjct: 987 SKIESGKLELEQYPFTLRNAIEECIDIFSATAAEKHLELVYFIHEKVPTKVSGDVTRLRQ 1046
Query: 501 IITNLVGNSVKFTERGHIFVKVHLA--------ERTMVKTDAKDETLLNGGTEEGVCRSG 552
I+ NLV N+VKFT+ G + ++V L ER MV D D+ + ++
Sbjct: 1047 ILVNLVSNAVKFTKSGEVVLEVQLQQPREQNADERLMVFHDHDDD-------KYNYPQAA 1099
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
QF+ + TL V DTG
Sbjct: 1100 LQQFD-----------------------------------------DKKCTLHFTVRDTG 1118
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
IGIP ER+F F Q D+ST+R YGGTG+GL+ISK L ELM G++ S GSTF
Sbjct: 1119 IGIPADRLERIFHSFSQVDASTTRKYGGTGLGLTISKHLCELMNGKMWVESELGKGSTFH 1178
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
FT + D K S L G A++VD+ + G+
Sbjct: 1179 FTITLER-----LPDTKGEYSSKL----AGKHALIVDDNATNRRILSLQSATWGMSSHTV 1229
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
S K+A +G+ F I+ D + D A L P LP L
Sbjct: 1230 GSGKNALELIHSGM-----HFDVGIL----DFHMPEMDGLMLAMELRKLPQTQ--DLP-L 1277
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
++L + +++ + GF+ + KP++ S + L V + P +
Sbjct: 1278 VMLTSAGNRETVSETVGVGFS-AFLNKPIKQSQLYDVLTDVFQKGELPVREKPKPK-TKV 1335
Query: 853 HQGLLR--GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
L R +IL+ +DN VN+ + L+K G + AA+ ++ L+S +D M
Sbjct: 1336 SIDLAREIPLRILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALKS-KTYDLILM 1394
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-ILAMTADVIHATF 969
D+QMPEMDG ATR I Q + L P I+AMTA+ +
Sbjct: 1395 DVQMPEMDGLTATRYICQNWPR--------------------LERPFIIAMTANAMKGDR 1434
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKF 997
+ CL+ GMD Y+SKP ++L + L K+
Sbjct: 1435 EACLEAGMDDYLSKPVRFDDLQKALDKW 1462
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+P+ + L GK L+VDDN NR + + +G + S K AL+ + S F
Sbjct: 1186 LPDTKGEYSSKLAGKHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHSGMHF 1245
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D +D MPEMDG +R++ + LP++ +T+
Sbjct: 1246 DVGILDFHMPEMDGLMLAMELRKLPQTQD--------------------LPLVMLTSAGN 1285
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
T E + G +++KP ++ LY L F+ L
Sbjct: 1286 RETVSETVGVGFSAFLNKPIKQSQLYDVLTDVFQKGEL 1323
>gi|302760541|ref|XP_002963693.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
gi|300168961|gb|EFJ35564.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
Length = 825
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 207/649 (31%), Positives = 312/649 (48%), Gaps = 99/649 (15%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ E + +AE+A A+S+FLA +SHEIRTP+NG++GM ++LLDTD + Q + +T + G
Sbjct: 258 LAEARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLLDTDPTPDQEECLETIRTSG 317
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+ L+++IN++LD +KI+A KL + V NLR++++DV S+ + + KG+EL V
Sbjct: 318 ECLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDS-- 375
Query: 488 PEFVLG-DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
P F + D R RQ++ NL+GNS KFT GHI V V L ++ K T+
Sbjct: 376 PFFAVSVDTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLK--------ATDF 427
Query: 547 GVCRSGTGQFNTLSGLEA-ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
CRS + N+ G E +D KH+ E F+ + S
Sbjct: 428 WECRSCSKDVNSFKGRELDSDA-------KHVKPVEYFKFSIS----------------- 463
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
D+GIGI +F F Q D TS YGGTG+GL++SK LV+LM G+I SR
Sbjct: 464 ----DSGIGIAEDKLGLLFEKFSQCDQLTSSMYGGTGLGLAVSKSLVDLMGGEIVVESRE 519
Query: 666 QVGSTFSFTA-----VFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
VGSTFSF+ V + + + S+ + P + +V+D + V
Sbjct: 520 GVGSTFSFSIPLEIDVVSEKNRHQVPLLYSSRFQARP------RILVIDNHKITRQVMCE 573
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
+ GI + S + A N + D +LVE F + L
Sbjct: 574 QIESWGIECQCSGDVASALKLLANRFHVA----VVDNVLVET----------FQKK-LQI 618
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ---VLSTE 837
K F K ILL + +A GF+ T + +PLR S + L + +L +
Sbjct: 619 KRIAEEFPGTKFILLKP--VGHRVNAQEAYGFSCT-LSRPLRQSTLKDALLKTFNLLGFK 675
Query: 838 NKRQAGRGVPNGSSFHQG-----LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ +A R S+ + R K+LVV+DN VN+MVA L G TV+ A +
Sbjct: 676 SFEEASRPALASSNRSKAGDKAQTRRHPKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNG 735
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A+ + P +D FMD MP +DGF+A+R IR +
Sbjct: 736 QEAVSIVDKPVEYDLIFMDCHMPVLDGFQASRLIRSKQKLT------------------- 776
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
PI+A+TA + + ++CL+CGMD YV KP ++ L R L K+ K
Sbjct: 777 ---PIVALTAATMESELEKCLECGMDDYVRKPCTKQELQRVLHKWLDWK 822
>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1069
Score = 262 bits (669), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 218/714 (30%), Positives = 329/714 (46%), Gaps = 146/714 (20%)
Query: 341 FVIGLLVGYILYGAAIHIVKVEDDF-------HKMQELKVRAEAADVAKSQFLATVSHEI 393
F + + VG ++YG I+ D +++E K +AEAA AKS+F+A +SHEI
Sbjct: 281 FPVEVRVGPVVYGGRRMILAAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEI 340
Query: 394 RTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV 453
RTPMNG++GM LLLDT L+ QR+YA+T + G+AL+A++N++LD +KIEA +L LE +
Sbjct: 341 RTPMNGVIGMAELLLDTPLTPEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERI 400
Query: 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513
F + +++V+SL + ++ KG+EL F+ VP + GDP R RQ++TNL+GN++KFT
Sbjct: 401 PFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFT 460
Query: 514 ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDK 573
E G + V V L +K+E G G ++ G++ ++
Sbjct: 461 EEGEVVVSVSL---------SKEEKSAPAGERGGEIELRFEVKDSGIGIQE-------EQ 504
Query: 574 FKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSS 633
KHL +A Q++AS GG TG+G+ +S Q
Sbjct: 505 QKHLFEAFS-QADASTTRRY---GG------------TGLGLAISRQ------------- 535
Query: 634 TSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKS 693
LVE+M G+I S P+ GSTF F+A F V + ++ KS
Sbjct: 536 -----------------LVEMMGGEIGLKSSPKEGSTFHFSARF------VLPEEEEEKS 572
Query: 694 EDLPP---------------------GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
PP GL+ +VVD+ + L + K
Sbjct: 573 PKTPPEEGEGGGARRTREEEERGRRESLAGLRVLVVDDNATNRTILCRQLEAWRMEPKSV 632
Query: 733 SSIK------DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
+ +AS T +S D D+ + E D Q + K G
Sbjct: 633 GGAQEAIRELEASGTFLASSSSGYDLVILDMQMPETDGLELARRIKSRLQEEEEK-RGGA 691
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
F +L+LL T++ +K KA G + + KP+R S + + + + K++ R +
Sbjct: 692 FSALRLMLL-TSMDPQTKEKIKASGTVEACLQKPVRQSQLYDAIATLF--QKKKEEERPL 748
Query: 847 PNGSSFHQGLLRGKK-----ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-- 899
P + HQ + IL+ +DN VN+ VAA LKK G VE A + + AL KL
Sbjct: 749 PLPA--HQKEEEKEGKERPLILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFP 806
Query: 900 ---------------QSP-HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
SP + A MDIQMP+MDG EATRRIR E + ++
Sbjct: 807 PPSSPPSSSGREEGGGSPKKKYAAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLP----- 861
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
PI+AM+A + + LK GMD Y+SKP ++E L L +F
Sbjct: 862 ----------RTPIIAMSAHAMQEDRERALKAGMDHYISKPVKKEQLKEALERF 905
>gi|428308622|ref|YP_007119599.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428250234|gb|AFZ16193.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1157
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 205/668 (30%), Positives = 315/668 (47%), Gaps = 94/668 (14%)
Query: 352 YGAAIHIVKVEDDF----HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
Y A + +V + ++++ K +E A KSQFLA +SHEIRTPMN I+GM LL
Sbjct: 387 YLAQLELVASSQELSQTNQQLEKAKAESEEATRIKSQFLANMSHEIRTPMNAIIGMTGLL 446
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
L T+L+ QRD+ TAQ +AL+ALIN++LD +KIE+ +ELE FNL++ +++ L +
Sbjct: 447 LTTELTPQQRDFVTTAQSSSEALLALINDILDLSKIESGSVELEKQAFNLQSCIEESLDI 506
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+ K+ KGIELA + + P ++GD R RQI+ NLV N+VKFT+ G +
Sbjct: 507 LALKAAEKGIELAYGMHPQTPSIIVGDVTRLRQILVNLVSNAVKFTQTGEV--------- 557
Query: 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNA 587
+V AK+ LE G K + +N
Sbjct: 558 -VVSVTAKE-------------------------LEGDKGDKGDKGDKGDKGEKILYTNE 591
Query: 588 SIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647
+ N+ + V+DTGIGIP +R+F F Q D+ST+R YGGTG+GL+I
Sbjct: 592 TCYNLQPAT----KFEFQFAVKDTGIGIPPDRIDRLFKSFSQVDASTTRKYGGTGLGLAI 647
Query: 648 SKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
K L E+M G++ S+ GSTF FT V D S++ PP F+G + ++
Sbjct: 648 GKQLSEMMGGRMWVESQVNRGSTFYFTLVAAATA-----DSSPMNSDNFPPQFQGKRLLI 702
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWI 766
VD+ + L G+++ ++S +A G QP D+ L+ D +
Sbjct: 703 VDDNDTYRQILTQQLQSWGMLIYGAASAAEAFDWLNQG--------QPLDMALL--DMQM 752
Query: 767 SGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
G D A + N ++ L+LL + + ++ + KP++ S +
Sbjct: 753 PGMDGLTLATKIRSYSN---YQTLPLVLLTSINGLERANQTHVPVDLAAFLTKPIKQSQL 809
Query: 827 AACLQQVLS-------------TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRM 873
+ L Q+L+ EN Q +P +IL+ +DNGVN+
Sbjct: 810 DSVLNQILAGSSISVNPLPVTLPENPLQLATQLP------------LRILLAEDNGVNQK 857
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES-- 931
VA LK+ G + ++ LD ++ +D MD+QMP MDG ATR I Q S
Sbjct: 858 VALHLLKRIGYQADVVSNGLEVLDAVKR-KSYDVVLMDVQMPLMDGLTATRCICQELSGD 916
Query: 932 ----KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEE 987
+AN+ N + I+AMTA+ + +ECL GMD Y+ KP
Sbjct: 917 GEFGEANQNSQNSDRNQPSKPATSHKRPRIIAMTANAMQGDREECLNAGMDDYLCKPISL 976
Query: 988 ENLYRELA 995
+ L + L+
Sbjct: 977 KALIQALS 984
>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1437
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 209/686 (30%), Positives = 305/686 (44%), Gaps = 154/686 (22%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A AA AKS+FLAT+SHEIRTPMN ++GM LLLDTDL+ QRD+ +T + G AL+ +I
Sbjct: 675 ALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTDLNPEQRDFVETVRASGDALLTII 734
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ KL+LE FNLR+ ++D L L + ++ KG+ELA + PE ++GD
Sbjct: 735 NDILDFSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEMIIGD 794
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLA-----ERTMVKTDA---KDETLLNGGTEE 546
R RQI+ NL+ N+VKFTE+G + V V + + + TD+ KD+ NG +
Sbjct: 795 VTRVRQILVNLLSNAVKFTEKGEVVVSVSASAIPPQQAGGIGTDSLILKDQETTNGHLHK 854
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ S+ G+ +
Sbjct: 855 DLNPD-------------------------------------------SSAGNPLCQIQF 871
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS--- 663
V DTGIGIP R+F F Q DSST+R YGGTG+GL+ISK L ELM G++ VS
Sbjct: 872 TVSDTGIGIPPERMNRLFKSFSQVDSSTTREYGGTGLGLAISKRLSELMGGRMWVVSGEG 931
Query: 664 -------------------------------------------RPQVGSTFSFTAVFGKC 680
P GSTF FT +
Sbjct: 932 VGGDPDPAFQWPIASSVQEQSSPMPDPEQSIFTLTDAKSDQADTPPTGSTFYFTVMATPA 991
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
+ D+ ++ P G + ++VD+ A + L R + M A+S
Sbjct: 992 VNPLPVDLNGTQ-----PSLAGKRVLIVDDN----ATNRQILTRQALFWGMKPK---AAS 1039
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS 800
+A+ L ++ DI ++ D + D A + F L ++ T+I
Sbjct: 1040 SAREALDWLQNSEMFDIAIL--DMQMPQMDGITLASYIRGIVKNREFPL----VMLTSIG 1093
Query: 801 KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP--------NGSSF 852
+ E D FA + KP++ S + L + GVP N +
Sbjct: 1094 RQEVDLPDKVPFA-AFLNKPIKQSYLYNVLAGIFG---------GVPILSRPVHLNAVAI 1143
Query: 853 HQGLLRGK--KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
+ + K +IL+ +D+ VN+ VA L + G + A + L L H +D M
Sbjct: 1144 DPQMAQQKPLRILLAEDHLVNQKVALQILHRLGYRADVAGNGIEVLQALDRQH-YDVVLM 1202
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-ILAMTADVIHATF 969
D+ MPEMDG ATR+I Q ++DG H P I+AMTA+ +
Sbjct: 1203 DVHMPEMDGLAATRQICQ-------------DALDGRLS----HRPRIIAMTANAMQGDR 1245
Query: 970 DECLKCGMDGYVSKPFEEENLYRELA 995
+ CL GMD Y+SKP L LA
Sbjct: 1246 ELCLDAGMDDYISKPIRMPELVEALA 1271
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
Q L GK++L+VDDN NR + +G + A+SA+ ALD LQ+ FD +D+Q
Sbjct: 1003 QPSLAGKRVLIVDDNATNRQILTRQALFWGMKPKAASSAREALDWLQNSEMFDIAILDMQ 1062
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MP+MDG IR G K E L M + D
Sbjct: 1063 MPQMDGITLASYIR------------------GIVKNREFP---LVMLTSIGRQEVDLPD 1101
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
K +++KP ++ LY LA F P+
Sbjct: 1102 KVPFAAFLNKPIKQSYLYNVLAGIFGGVPI 1131
>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1562
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 206/650 (31%), Positives = 318/650 (48%), Gaps = 77/650 (11%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G A I + H++Q + AEAA+ AKS FLA +SHEIRTPMN ++G+ LLL T L
Sbjct: 775 GIATDITHRIESEHQVQLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGLSQLLLQTSL 834
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
QRDY + L+ +IN++LD +KIEA KLEL+ F + +LD + +LF +
Sbjct: 835 DDRQRDYLNKISNSSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGSTA 894
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
+KG+E+ +S VP + GD R Q+ TNL+GN+VKFTE+GH+ + VH +E ++
Sbjct: 895 EDKGLEIIFNISTDVPRILKGDSLRLGQVFTNLLGNAVKFTEKGHVELAVHKSEVRSQES 954
Query: 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
+ +D+ GTE G G + GLEAAD R+S K
Sbjct: 955 EVRDQ-----GTEVRSQDLGQGTGDRGQGLEAAD-RDSESKI------------------ 990
Query: 593 MASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV 652
V L+ ++DTGIG+ +R+F PF QAD+ST+R YGGTG+GL IS LV
Sbjct: 991 ---------VRLLFEIKDTGIGMDDEQVQRLFQPFSQADTSTTRKYGGTGLGLVISHKLV 1041
Query: 653 ELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKP 712
+ M G + S P GS F F E S++ GF + +VVD+
Sbjct: 1042 QRMGGTLQVDSTPGQGSRFYFEIDLPMAPE--------SETTQECIGFDSHRVLVVDDHE 1093
Query: 713 VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG 772
V + L VK + +A + + +++ +P V D + GE G
Sbjct: 1094 AARQVLRNILESCMFQVKEAHD----GRSAVDAVVAADRAGEP-YEFVFMDWKMPGELDG 1148
Query: 773 FNA--QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
A ++ G + ++ + + E + F + + KP+ AS I +
Sbjct: 1149 LQAAREIDRLYAEGFLKGNRPPFVVVSAYQRSELPEDSVECF-NCFLSKPVTASSIFNAI 1207
Query: 831 QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
E +A + F +G IL+ +DN +N+ VA L+K GA + AA
Sbjct: 1208 -----AEATGKAPSYTRDDEQFTIPSFQGYSILLAEDNALNQEVAWQMLEKTGAALSLAA 1262
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ A++ +++ FD MD+QMP MDGFEATR+I +E +
Sbjct: 1263 NGAEAVEMVEAG-SFDLVLMDLQMPVMDGFEATRKI--LERFPD---------------- 1303
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
LP++A++A V+ ++ + GM ++SKP E +LYR LA++ ++
Sbjct: 1304 ----LPVIALSAAVMEEDRNKSRQAGMRDHLSKPIESTSLYRTLARWLQA 1349
>gi|192359994|ref|YP_001980883.1| MmoS protein [Cellvibrio japonicus Ueda107]
gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
Length = 803
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 194/621 (31%), Positives = 298/621 (47%), Gaps = 110/621 (17%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKSQFLAT+SHEIRTPMNG++GML +L DT L Q+ Y G+ L+++I
Sbjct: 271 AEDASRAKSQFLATMSHEIRTPMNGVIGMLDMLRDTPLDENQKHYIDVIHRSGETLLSII 330
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA K++LE ++F L ++++ + LF + + IEL ++ VP + GD
Sbjct: 331 NDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATANKRNIELFGGLNPDVPRRLRGD 390
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
P R RQII NL+GN+ KF TEEG G
Sbjct: 391 PTRLRQIIINLLGNAFKF-------------------------------TEEGFVSLEVG 419
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
NT L+A +GR + L V+D+GIG
Sbjct: 420 LDNT--ALQA-EGR---------------------------------LMLRFVVQDSGIG 443
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
I ++ +F F QAD+ST+R YGGTG+GL+I K L ELM G+I S G+ F FT
Sbjct: 444 IDPNSASNLFDSFNQADASTTRKYGGTGLGLAICKSLAELMGGRIGVKSAKGEGAQFWFT 503
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
A F D+++ S L P KG + ++V+ TQ + + G++++ +
Sbjct: 504 AQF---------DVQELASPSLTPDPTLKGKRLLMVETSAPLVTFTQRYCDHWGLLLETA 554
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF-KLPK 791
S K A + K+GL + E D + + + +GF +L W + F +LP
Sbjct: 555 FSAKQAVALLKHGLHAGEPF---DFVAFDYSL---PDATGF--ELAQWLRDAPDFTELPV 606
Query: 792 LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
+ ++ D+ + TV+ KP+ + A +++++ A +P
Sbjct: 607 FMFSGGDVYHDQAVMQRLA--IHTVLRKPIS---VKALYRELIALLGHEAAPTVLPAEKV 661
Query: 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFM 910
+ ++LV +DN VNRMV G L K G A + + A+D + FD M
Sbjct: 662 LARDKFAHLQVLVAEDNPVNRMVIKGLLGKLGIQPVFAENGREAVDLVHHGAQRFDLILM 721
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
D +MPEMDGFEATR IR++E ++ G +V P++A+TA + +
Sbjct: 722 DCEMPEMDGFEATRNIRELERRS------GRPAV-----------PVVALTAHALQEHRE 764
Query: 971 ECLKCGMDGYVSKPFEEENLY 991
GM+ Y++KP ++LY
Sbjct: 765 AVFASGMNYYLAKPITFDSLY 785
>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1700
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 309/630 (49%), Gaps = 77/630 (12%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
F + Q+ + A A KS FLA +SHEIRTPMNG++GM LLL T+L+ Q D+ QT +
Sbjct: 1005 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQLDFVQTLK 1064
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+ G+ L+++IN++LD +K+EA ++ LE + FNL +++VL L + ++ KGIE+ +
Sbjct: 1065 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1124
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
VP + GD R RQI+TNL+ N++KFTE G + ++V +A + LL
Sbjct: 1125 SDVPVQIKGDAARLRQILTNLINNAIKFTEAGEVVIEV---------ANASNPGLLAASE 1175
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
+ + + I+ ++N ++ L
Sbjct: 1176 NQKILEN--------------------------IEKLKIENNDLML-------------L 1196
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
+ V DTGIGI ++++F F Q D+ST+R YGGTG+GL+ISK LVELM GQI S
Sbjct: 1197 LFKVTDTGIGIAPEDKKKLFQSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVEST 1256
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
P GSTF FT KE + + +L G K +V +KP + L R
Sbjct: 1257 PGQGSTFWFT--VPTVKEN-LTAVGTACEVNLETVLAGRKMLVASDKP----TVRKLLVR 1309
Query: 725 LGIMVKMS-SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
+ ++ M +++ T + + DI+LV D + +G +L +P
Sbjct: 1310 MAVLWGMEVEEVENGWMTIASLYKAVSLNSPYDIVLV--DIQLPEMVAGSLERLRISEP- 1366
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV---LSTENKR 840
+ K ++L + E + GF+ + KP++A + CL ++ ++
Sbjct: 1367 --AMQQTKWVVLTSTNQLAEAKRLVNSGFSG-YLTKPVKAHRLFDCLANAIAPMTLMDEP 1423
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+A S+ L KIL+V+D +N+ V L+ G T + A + AL +
Sbjct: 1424 RANLTSNRASAIDNRELASLKILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALSMV- 1482
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ +D MD QMP +DG+EATR +R+ E+ + +++ K ++AM
Sbjct: 1483 ALKKYDIVLMDCQMPVLDGYEATRELRRREAA------DAAGNMEPHQKT-----VVIAM 1531
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENL 990
TA+ + ++CL GMD Y+SKP E L
Sbjct: 1532 TANALKGDREKCLAAGMDDYISKPISIEKL 1561
>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1369
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 218/685 (31%), Positives = 322/685 (47%), Gaps = 143/685 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+++E K +AEAA AKS+F+A +SHEIRTPMNG++GM LLLDT L+ QR+YA+T +
Sbjct: 617 EELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTPEQREYARTIRS 676
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G+AL+A++N++LD +KIEA +L LE + F + +++V+SL + ++ KG+EL F+
Sbjct: 677 SGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEP 736
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
VP + GDP R RQ++TNL+GN++KFTE G + V L++ K+ E GG
Sbjct: 737 GVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSASLSKEEKKKSAPAGE---RGGEI 793
Query: 546 E---GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
E V SG G ++ KHL +A Q++AS GG
Sbjct: 794 ELRFEVKDSGIGIQE--------------EQQKHLFEAFS-QADASTTRRY---GG---- 831
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TG+G L+IS+ LVE+M G+I
Sbjct: 832 --------TGLG------------------------------LAISRQLVEMMGGEIGLK 853
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP---------------------GFK 701
S P+ GSTF F+A F V + ++ KS PP
Sbjct: 854 SSPKEGSTFHFSARF------VLPEEEEEKSPKTPPEEGEGGGARRTREEEERGRRESLA 907
Query: 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVK----MSSSIK--DASSTAKNGLTSSEDKFQP 755
GL+ +VVD+ + L + K +I+ +AS T +S D
Sbjct: 908 GLRVLVVDDNATNRTILCRQLEAWRMEPKSVGGAQEAIRELEASGTFLASSSSGYDLVIL 967
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADT 815
D+ + E D Q + K G F +L+LL T++ +K KA G +
Sbjct: 968 DMQMPETDGLELARRIKSRLQEEEEK-RGGAFSALRLMLL-TSMDPQTKEKIKASGTVEA 1025
Query: 816 VIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK-----ILVVDDNGV 870
+ KP+R S + + + + K++ R +P + HQ + IL+ +DN V
Sbjct: 1026 CLQKPVRQSQLYDAIATLF--QKKKEEERPLPLPA--HQKEEEKEGKERPLILLAEDNPV 1081
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKL-----------------QSP-HCFDACFMDI 912
N+ VAA LKK G VE A + + AL KL SP + A MDI
Sbjct: 1082 NQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKKKYAAVLMDI 1141
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMP+MDG EATRRIR SK E ++ + PI+AM+A + +
Sbjct: 1142 QMPKMDGLEATRRIR---SKEEEGVLRLPRT------------PIIAMSAHAMQEDRERA 1186
Query: 973 LKCGMDGYVSKPFEEENLYRELAKF 997
LK GMD Y+SKP ++E L L +F
Sbjct: 1187 LKAGMDHYISKPVKKEQLKEALERF 1211
>gi|428319138|ref|YP_007117020.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242818|gb|AFZ08604.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1831
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 216/697 (30%), Positives = 322/697 (46%), Gaps = 146/697 (20%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AKS+FLAT+SHEIRTPMN ++GM LLLD +L+ QRD+ +T + G AL+ +I
Sbjct: 1035 AEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTII 1094
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ KL+LE F L+ +++ L L + ++ KG+ELA F+ D VP+ +LGD
Sbjct: 1095 NDILDFSKIESGKLDLERSPFELQNCIEESLELLAPRASEKGLELAYFIDDSVPKNILGD 1154
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R RQI+ NL+GN+VKFTE G I VC
Sbjct: 1155 VTRLRQILVNLLGNAVKFTESGEIV----------------------------VC----- 1181
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
T +E +S +K L + +IN + V+DTGIG
Sbjct: 1182 --CTARKIEQIAANSSPEKINIL------EPQPLLINQ-GELARRRQYEIQFAVQDTGIG 1232
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
IP +R+F F Q D+ST+RHYGGTG+GL+IS+ L ++M G + VS+ GS+ S
Sbjct: 1233 IPPDRMDRLFKAFSQVDASTTRHYGGTGLGLAISQRLSDMMGGTMWVVSQVSPGSSKSQP 1292
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV-------------DEKPVRAA----- 716
V + +S +E PP G ++ +++P AA
Sbjct: 1293 GVSAIGQSIA----GRSPAEFTPPSISGSGSIFYFTVTAEANDIRAEEKRPEFAAGKRLL 1348
Query: 717 VTQYHLNRLGIMVKMSSS---IKDASSTAKNGLTSSEDKFQPDIILVEKD---------- 763
+ ++H ++++ + S I A ++ L + D+ ++ +
Sbjct: 1349 IVEHHAINRQVLIRQAESWGMIPVAVTSGAEALEIIKGNSPLDLAILAMNLPDMDGVALA 1408
Query: 764 --------CWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKA--KAGGFA 813
+SG+D G N ++ K N LP ++L T +SK E K
Sbjct: 1409 VEIRKFELSNLSGDD-GINPNVIKVK-NPRKIALP--LVLFTYLSKAEVWKKLETTEVHF 1464
Query: 814 DTVIMKPLRASMIAACLQQVLSTENKRQAGRG-VPNGSSFHQGL---------------- 856
+ KPL+ S L QV R +GRG V N + GL
Sbjct: 1465 SAFLTKPLKQSQFYNVLLQVFGYVTGR-SGRGEVSNVVTVTSGLKYFENSQEQHRVQRTP 1523
Query: 857 --LR-------GK--------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
LR G+ +IL+ +DN VN+ VA L + G + AA+ L+ L
Sbjct: 1524 AVLRQVAANSAGQDATNSSQIRILLAEDNVVNQKVATHLLDRIGYRADIAANGLEVLEAL 1583
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ +D MD+QMP MDG EATRRI Q E AN++ I+A
Sbjct: 1584 KR-QSYDVVLMDVQMPNMDGLEATRRICQ-EWPANKKPR------------------IIA 1623
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
MTA+ + ++CL GMD Y++KP E L L+K
Sbjct: 1624 MTANAMQGDREKCLAAGMDDYITKPVRREELAIALSK 1660
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
GK++L+V+ + +NR V + +G S AL+ ++ D + + +P+MD
Sbjct: 1344 GKRLLIVEHHAINRQVLIRQAESWGMIPVAVTSGAEALEIIKGNSPLDLAILAMNLPDMD 1403
Query: 919 GFEATRRIRQMESKANEQMMNG-GSSVDGTAKRDELHLPILAMT----ADVIHATFDECL 973
G IR+ E +N +G +V ++ LP++ T A+V E
Sbjct: 1404 GVALAVEIRKFE-LSNLSGDDGINPNVIKVKNPRKIALPLVLFTYLSKAEVWKKL--ETT 1460
Query: 974 KCGMDGYVSKPFEEENLYRELAKFF 998
+ +++KP ++ Y L + F
Sbjct: 1461 EVHFSAFLTKPLKQSQFYNVLLQVF 1485
>gi|427421169|ref|ZP_18911352.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425757046|gb|EKU97900.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 927
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 211/655 (32%), Positives = 304/655 (46%), Gaps = 109/655 (16%)
Query: 357 HIVKVEDDFHKM-----QELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL 408
H+++++D M QE+ + A AA +KS FLA +SHEIRTPMNGILGM LLL
Sbjct: 245 HVIQLKDLEINMLERREQEIAISRDEALAAAESKSNFLANMSHEIRTPMNGILGMSGLLL 304
Query: 409 DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLF 468
DTDL+ QR++++T C +LI +IN++LD +KIE+ KL+LE F LR +++ L L
Sbjct: 305 DTDLTQQQRNFSETIWNCCNSLITIINDILDFSKIESGKLDLEECPFELRTCVEEALDLL 364
Query: 469 SEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+ ++ KG+ELA P +GD R RQI+ NL+GN+VKFT G + VKV RT
Sbjct: 365 AARAAEKGLELAYIADLSTPNRFVGDVTRLRQILVNLIGNAVKFTHEGEVLVKV----RT 420
Query: 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNAS 588
T L + E + K K + A+G +S
Sbjct: 421 ---------TPLQKSSIEDI------------------------KLKDISHAQGKESF-- 445
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
VTL V+DTGIGIP +R+F F Q D+ST+R YGGTG+GLSIS
Sbjct: 446 -------------VTLHFDVQDTGIGIPTDKMDRLFKSFSQVDASTTRQYGGTGLGLSIS 492
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L ELM G ++ S GS FSF+ V ++ + D+ K + ++V
Sbjct: 493 KQLCELMGGNMTVTSVVGEGSCFSFSIVVD-----ALPTLENEQVSDIAHQLKDKRVLIV 547
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D+ T + L I S+ G+ S + F I+ D +
Sbjct: 548 DDN-----ATNREILTLQTQSWEMQPITAQSAYEALGILSCQSSFDVAIL----DMQMPE 598
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDEC-----DKAKAGGFADTVIMKPLRA 823
D A + + G KLP ++L T++ + E DKAK F + KP++
Sbjct: 599 VDGLTLAHKIRDQTYGK--KLPLVML--TSLGRPEVDPKALDKAKFSAFLN----KPIKQ 650
Query: 824 SMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK--KILVVDDNGVNRMVAAGALKK 881
S + L QV S + + S L + +ILV +DN VN+ + L K
Sbjct: 651 SHLYDALVQVFSDQPIKIQKSISAQQSGLDSTLAQSHPLRILVAEDNLVNQQLIRQWLDK 710
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
G + + A+D L+ +D MD+ MPEMDG AT +I + S AN
Sbjct: 711 LGYRSDIVGNGYEAIDALKR-QPYDVILMDVHMPEMDGLTATEKICEQWSTANRPH---- 765
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
I+A+TA + D C+ GM Y+SKP +L L K
Sbjct: 766 ---------------IVALTASAMKGDRDLCMAAGMHDYISKPIHVPDLIAVLKK 805
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
HQ L+ K++L+VDDN NR + + + A SA AL L FD +D+
Sbjct: 537 HQ--LKDKRVLIVDDNATNREILTLQTQSWEMQPITAQSAYEALGILSCQSSFDVAILDM 594
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA----DVIHAT 968
QMPE+DG +IR D T + LP++ +T+ +V
Sbjct: 595 QMPEVDGLTLAHKIR-----------------DQTYGK---KLPLVMLTSLGRPEVDPKA 634
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
D K +++KP ++ +LY L + F +P+
Sbjct: 635 LD---KAKFSAFLNKPIKQSHLYDALVQVFSDQPI 666
>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1625
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 218/709 (30%), Positives = 327/709 (46%), Gaps = 143/709 (20%)
Query: 335 TTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIR 394
T A+ ++ G +V + G + I +++ +QE + +A+ A AKS+FLA +SHEIR
Sbjct: 879 TAAWPVYDSGRIVR--VAGHIMDITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIR 936
Query: 395 TPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVL 454
TPMNG++GM LL+DT+L QR A++ Q G+AL+ALIN++LD +KIEA +LELE+V
Sbjct: 937 TPMNGVIGMTDLLMDTELRPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVD 996
Query: 455 FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE 514
FNLR +L+D+ SL + ++ KG+EL VP V GDPGR RQI+TNLVGN++KFT
Sbjct: 997 FNLRYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTH 1056
Query: 515 RGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ------FNTLSGLEAADGR 568
+G + V+V +E A D LL + G+ G + FN S ++A+ R
Sbjct: 1057 QGEVVVRVQRSE-----VSADDVLLLFTVQDTGI---GIPEDKIDLLFNKFSQVDASTTR 1108
Query: 569 NSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
KF GG TG+G+ +S Q
Sbjct: 1109 ----KF----------------------GG------------TGLGLAISRQ-------- 1122
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
L E+M G++ S G F FTA
Sbjct: 1123 ----------------------LAEMMGGEVGVQSEYGRGCKFWFTARL----------T 1150
Query: 689 KQSKSED----LPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKN 744
Q K E+ LP G ++VD+ + + L G+ V+ +S +A +
Sbjct: 1151 LQKKQEEPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGVEVEQASGGHEALRIL-D 1209
Query: 745 GLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDEC 804
+ S + F I+ D + D G Q + K +G LP L++L + +
Sbjct: 1210 RVYSEGNSFAMAIL----DMHMPAMDGGELGQRI--KKSGKFNDLP-LVMLTSLGRPGDA 1262
Query: 805 DKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK--------RQAGRGVPNGSSFHQGL 856
+ GF + + KP+R S + L VLS+ K R R + S L
Sbjct: 1263 KIFEEQGF-NAYLNKPVRQSELFDTLLTVLSSAGKAPGHSIITRHQAREIKRQQS---EL 1318
Query: 857 LRGK-KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
++ K +LV +DN VN+ VA G L K G + + + A++ LQ+ +D MD+QMP
Sbjct: 1319 IKFKGHVLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQN-QSYDLVLMDVQMP 1377
Query: 916 EMDGFEATRRIRQMESKANEQMMNGG----SSVDGTAKRDELH----------------- 954
EMDG EAT+ IR+ME E+ G S E H
Sbjct: 1378 EMDGLEATQEIRRMEHGTEEREQRTGDRRWESQPLNPSTPEYHNPSIPKSFNPKIPQSLN 1437
Query: 955 --LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+PI+AMTA ++ D C + GMD YVSKP + L + L ++ + +
Sbjct: 1438 PKIPIIAMTAGAMNQDRDRCFEAGMDDYVSKPVSHQELLKVLNRWLEKE 1486
>gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
Length = 887
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 209/638 (32%), Positives = 292/638 (45%), Gaps = 119/638 (18%)
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443
+FLA +SHEIRTPMN ++GM LLLDT L+ QRDY +T G+AL+ LIN++LD +KI
Sbjct: 333 RFLAVMSHEIRTPMNAVIGMTTLLLDTSLTPQQRDYVETIHGSGEALLCLINDILDFSKI 392
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
E+ KLELE FNLR L++ + L + ++ KGIELA +S PE + GD R RQI+
Sbjct: 393 ESGKLELETRPFNLRTCLEEAIDLLATRATEKGIELAYLISPPTPEQIQGDVIRLRQILV 452
Query: 504 NLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLE 563
NL+ N++KFTE G + + V E +++ L+GG E S + + TL
Sbjct: 453 NLINNAIKFTEAGEVVISVTAREVFPLRSQ------LSGGEEPPF--SVSAAYETL---- 500
Query: 564 AADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERV 623
++ ++ I VEDTGIGIP+ +R+
Sbjct: 501 ------PYEMPQYEIQ--------------------------FAVEDTGIGIPIDRLDRL 528
Query: 624 FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV---------------- 667
F PF Q DSS RHYGGTG+GL+ISK L E M G+I SR +
Sbjct: 529 FRPFSQVDSSVRRHYGGTGLGLAISKKLAETMGGRIWVSSRDETGAIGRAGEPPTGFTDV 588
Query: 668 ----GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
GSTF FT + + + + ++VD+ P + +
Sbjct: 589 LLRQGSTFYFTVLVPALPQPPAPPPPPGLAGK--------RLLIVDDNPTYRKILSLYSQ 640
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
G + + A S A L QP L D ++ D + + P
Sbjct: 641 FWGTLPYTFA----AGSEALRRLQQ-----QPGFDLAIIDDRLADMDGLSLVEQIRQLP- 690
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
LP LI L ++ G ++ KPLR S + L ++LS E A
Sbjct: 691 -QTATLP-LIFLTNTSQRERVASHLQNGL---ILTKPLRQSQLQDALLKLLSVEPSATAA 745
Query: 844 RGVPNGSSF----HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
P SSF Q LLR IL+ +DN VN+ VA LK+ G + A + L+ L
Sbjct: 746 LENPP-SSFPPLGSQNLLR---ILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEAL 801
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-IL 958
+ +D MD+QMPEMDG AT++IR R L P I+
Sbjct: 802 RQ-QSYDVILMDVQMPEMDGLTATQQIR----------------------RSGLPQPRII 838
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
AMTA+ + + CL+ GMD YVSKP +L L K
Sbjct: 839 AMTANAVQGDREACLEAGMDDYVSKPIRLPDLVEALQK 876
>gi|239907909|ref|YP_002954650.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797775|dbj|BAH76764.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1126
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 209/645 (32%), Positives = 312/645 (48%), Gaps = 122/645 (18%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
+F +Q E+A++ KS+FLA +SHEIRTP+NGI+GM LLLD++L+ Q +A+
Sbjct: 454 EFSLIQSRTQALESANL-KSEFLANMSHEIRTPLNGIIGMTGLLLDSNLTYEQTRFAEAI 512
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
+ G +L+ LI+++LD +KIEA K+E E+ FNL +LDD + ++ +G+EL V
Sbjct: 513 RSSGDSLLDLIDDILDFSKIEAGKIEFESFDFNLINLLDDFDDTMALRAYGRGLELLCKV 572
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
VP+++ GDPGR RQI+TNL GN++KFT G I ++V T+VK D +L
Sbjct: 573 EPNVPKWLRGDPGRLRQILTNLTGNAIKFTHAGEITLRV-----TLVK-DGTTNCIL--- 623
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
VC +G G+ + RN ++KF
Sbjct: 624 -RFSVCDTGI-------GISPVNTRNLFNKFT---------------------------- 647
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
QAD+ST+R YGGTG+GL+ISK L ELM G+I S
Sbjct: 648 -------------------------QADTSTTRKYGGTGLGLAISKQLTELMGGEIGVTS 682
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
+ GS F FT E + +P ++ ++VD+ + +
Sbjct: 683 QESQGSEFWFTVRLEIPPPGTHE------TTLIPANLFEVRVLIVDDNATNRDILYSLMT 736
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
G+ S++ DA S A L + ++ P II V I + G N + L
Sbjct: 737 TWGM---RPSTVIDAPS-ALQALYKALNENNPFIIAV-----IDSKMPGMNGEAL----- 782
Query: 784 GHVFKL-PKL----ILLATNISKDE-CDKAKAGGFADTVIMKPLRASMIAACLQQVL--- 834
G K P+L +++ T++ ++E + K GF+ KP+R S L V+
Sbjct: 783 GRAIKADPRLSRTKMVILTSLGQNENVEIYKKVGFS-AYANKPIRQSDFFKILSSVIIDT 841
Query: 835 -STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
N+ N + H +G +ILVVDDN NR VA G L K G +VE +
Sbjct: 842 DDVNNQNIITHCNTNENIIH--FSQGGRILVVDDNTTNRQVATGILTKLGLSVETVSGGA 899
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
AA+ L+ + FD FMD+ MP+MDG+EAT+RIR D +K
Sbjct: 900 AAIQVLELIN-FDIVFMDVLMPDMDGYEATKRIR-----------------DPLSKVINH 941
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
++PI+AMTA+ + +CL GMD Y+SKP +NL + LAK+
Sbjct: 942 NIPIIAMTANAMTGDRKKCLDAGMDDYISKPIMLKNLTQVLAKWL 986
>gi|359462985|ref|ZP_09251548.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1076
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 198/639 (30%), Positives = 304/639 (47%), Gaps = 107/639 (16%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q K RA+AA KS+FLA +SHE+RTPMN ++GM LL T L + Q+D+ T +
Sbjct: 536 ELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQQDFVDTIRSS 595
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ LIN++LD +KIEA KLE+E FNL++ +++ L L + ++ KG+E+A
Sbjct: 596 GDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPD 655
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P ++GD R RQ++ NL+ N VKFT+ G + V V KD T
Sbjct: 656 LPCGIVGDVTRLRQVLVNLLTNGVKFTDNGEVIVYV------------KDVT-------- 695
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ D EG + S G S
Sbjct: 696 ----------------------------AEMQDREG----------LGSEGQSPRRLFQF 717
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V+DTGIGIP R+F F Q DSST+R YGGTG+GL+ISK L ELM G+I S
Sbjct: 718 AVKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIWVDSEIG 777
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
+GSTFSFT + + + DL P KG + ++VD+ + + G
Sbjct: 778 IGSTFSFT-----IAAPIVDTFDCAPIHDLAP-LKGQRLLIVDDNLTNRKILTIFADIWG 831
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG-H 785
+ + + S A + SS D D+ + E D G L + +G
Sbjct: 832 MHSQSAPSGPAALELLRG--RSSFDLAVVDMQMPEMD--------GLT---LARRIHGLQ 878
Query: 786 VFK-LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS--TENKRQA 842
+K LP ++L + + K+ +A ++ KP++ + ++A L + ++ +EN + +
Sbjct: 879 KYKDLPLVMLSSLGVEAISTPMDKSLFYA--ILNKPIQEAQLSAILVRAVTRQSENTQNS 936
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
P S+ + L +L+ +D VN+ VA LK+ G + A + K L+ L
Sbjct: 937 ELDRPQPSTNSKTL----HLLLAEDVVVNQKVALLILKQLGYEADVANNGKEVLEALHR- 991
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
+D MD+QMPEMDG A+R I++ S E I+A+TA
Sbjct: 992 QPYDVVLMDLQMPEMDGLTASRAIQETWSP-------------------EARPYIIALTA 1032
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ + ++CL+ GM YVSKP E L L ++ S+
Sbjct: 1033 NAMQGDREKCLEAGMQDYVSKPIRSEELKAALERYLLSQ 1071
>gi|392410312|ref|YP_006446919.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623448|gb|AFM24655.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1147
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 194/658 (29%), Positives = 310/658 (47%), Gaps = 115/658 (17%)
Query: 353 GAAIHIVKVEDDFHKMQE-----LKVR--AEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
G++ +++ + +D + +E ++ R AE A AKS+FLA +SHEIRTP+NGI+GM
Sbjct: 468 GSSRYLLVISEDITERKEAEQALIRAREAAEQASRAKSEFLANMSHEIRTPINGIVGMTQ 527
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
L L+T L+ Q +Y + + +AL+ LIN++LD +K+EA KLEL AV F+LR + + +
Sbjct: 528 LALNTQLTPEQVEYLEAVETSAEALLRLINDILDFSKMEAGKLELVAVDFSLRDSIAETM 587
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525
+ + ++ KG+EL V++ +P+ + GDPGR RQI+ NL+ N++KFTERG + VKV
Sbjct: 588 TTLAVQAHAKGLELLYQVAESIPDTLTGDPGRLRQILINLIANALKFTERGEVVVKVD-- 645
Query: 526 ERTMVKTDAKDETLLNGGT-EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
++ K E L+ + G+ Q + E ADG S
Sbjct: 646 ----PDSETKREIRLHFSVADTGIGIPAEKQQRIFNAFEQADGSTS-------------- 687
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
GG TG+G+ +S++
Sbjct: 688 ---------RKYGG------------TGLGLAISSE------------------------ 702
Query: 645 LSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLK 704
LV +M G I S P GS F FT+ F KE + S + L
Sbjct: 703 ------LVRMMDGSIWLESEPGRGSIFHFTSTFRVAKEPIHTPAPADVS-----ALENLP 751
Query: 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC 764
+VVD+ + + L + + +I D A + + S+ ++ +P LV DC
Sbjct: 752 VLVVDDNATNRRILENTL----LQWQTKPTIVDGGEAALHAMKSAHEEGRP-FKLVITDC 806
Query: 765 WISGEDSGFNAQLLDWKPNGH-VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA 823
+ D GF L + N H + P +I+L + + + + G + ++KP++
Sbjct: 807 MMPEMD-GFE---LVRRINEHPSWATPTIIMLTSAGERGDAARCMKLGIS-AYLLKPIKQ 861
Query: 824 SMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG 883
S + + +VL A + S + R IL+ +DN VN+ +A L++ G
Sbjct: 862 SDLFFTISRVLKEPQDHPAQPSLITRHSIRESTKR-LHILLAEDNAVNQKLAVKMLERMG 920
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
TV +A+ + ALD L+ FD MD+QMP MDG EATR +R+ E +NE
Sbjct: 921 HTVSVSANGQEALDCLKI-QKFDLVLMDVQMPIMDGLEATRIVREHEKTSNE-------- 971
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
H+PI+AMTA + ++CL GMDGY+SKP + L+ L F ++
Sbjct: 972 ----------HVPIVAMTAYAMKGDKEKCLDAGMDGYISKPINAQELFETLEDLFHNE 1019
>gi|350551908|ref|ZP_08921118.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349795838|gb|EGZ49631.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1531
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 198/645 (30%), Positives = 301/645 (46%), Gaps = 125/645 (19%)
Query: 373 VRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIA 432
++A+ A AKS+FLA +SHEIRTPMNG++GM LLLDT+L+ QR YA T + +AL+A
Sbjct: 866 LKAQQASQAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNGEQRHYANTVKASAEALLA 925
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
LIN++LD +KIEA KL+LE + F+LR LDD + + K+ KG+E VP +
Sbjct: 926 LINDILDFSKIEAGKLDLETLDFDLRTTLDDFAMMMAFKAEEKGLEFICAADVDVPVLLC 985
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
GDPGR RQI+TNLV N++KFT +G + V+V + V TDA+ L + G+
Sbjct: 986 GDPGRLRQILTNLVSNAIKFTHQGEVAVRV-----SCVHTDAQTAHLRFSVRDTGI---- 1036
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
G+ DK L FQS + + D ++ TG
Sbjct: 1037 --------GIPK-------DKMDRL-----FQSFSQV-----------DASITREFGGTG 1065
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+G+ +S Q L LM G+I S GSTF
Sbjct: 1066 LGLAISRQ------------------------------LAILMGGEIGVDSVQGEGSTFW 1095
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
FT G C+ E Q++S L G++A++VD+ + + L + +
Sbjct: 1096 FTVKLG-CQ----EGDAQAESTLLIASLHGVRALIVDDNATNREILEQRLKHWQMRTSSA 1150
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
A + GL S +D +Q I+ D + G D +++ + +L
Sbjct: 1151 CDGPQALALLYQGL-SEQDPYQLAIL----DMCMPGMDGETLGRVIRADTR---LQETRL 1202
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE--------------N 838
+++ + + + + + GF+ + KPL+ + CL L+ E +
Sbjct: 1203 VMMTSVGQRGQGKRLEEIGFSG-YLSKPLQHLELFDCLSLALAREQHAPLITQHLTHELH 1261
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
K QA + + +IL+ +DN +N+ VA G L+KFG + A+ AL
Sbjct: 1262 KSQAAEYFKDSKA---------RILLAEDNIINQQVALGILRKFGLRADAVANGMEALSA 1312
Query: 899 LQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L S P +D MD+QMPEMDG +AT+ IR+ NE M G + H+PI
Sbjct: 1313 LSSLP--YDLVLMDVQMPEMDGLQATQWIRE-----NEAQMAGAVA----------HIPI 1355
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+AMTA + + CL+ GMD Y+ KP + L + L K+ P
Sbjct: 1356 IAMTAHAMQGDRERCLQAGMDDYLQKPVSPDALLQILQKWLPRHP 1400
>gi|427419449|ref|ZP_18909632.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425762162|gb|EKV03015.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 923
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 204/667 (30%), Positives = 303/667 (45%), Gaps = 133/667 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+++ F ++E K +AE A AKSQFLA +SHEIRTPMNG++G +LLL+TDLS Q++Y
Sbjct: 358 QIQSQFETIREEKKKAEIASQAKSQFLANMSHEIRTPMNGVIGTTSLLLNTDLSFEQQEY 417
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q +L+ +IN++LD +KIE+ + LE F LR ++DVL LF+ ++ K ++L
Sbjct: 418 VDIIQNSSDSLLGVINDILDFSKIESGYMVLEESSFELRHCIEDVLDLFASEALEKNLDL 477
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
++ VP + GD R RQI+ NLV N++KFTE+G + + V L + + + D
Sbjct: 478 LYQIASDVPRCIQGDLNRLRQILMNLVSNAIKFTEKGEVLISVRLRQSASLNSKTIDSKT 537
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
L E Q II
Sbjct: 538 L----------------------------------------ETIQPEFPII--------- 548
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
L V+DTGIGIP+ ++F F Q D+ST+R YGGTG+GL+I K LV LMRG+I
Sbjct: 549 ----LEFFVKDTGIGIPIDGIPKLFKDFSQVDNSTTRKYGGTGLGLAICKRLVTLMRGEI 604
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE-DLPPGFKGLKA---VVVDEKPVRA 715
S GSTF F+ + + ++S+ L P L+A ++VD+
Sbjct: 605 WVASDVGQGSTFYFS---------MQTRLADAQSQLHLNPQVSVLQACRVLIVDDSHASC 655
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
V ++ G+ + S + A K G +F II D + G D
Sbjct: 656 TVLAEQCSQWGLKPDTAPSAQAALGGLKRG-----QQFDLAII----DVQMPGMDGLELV 706
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR-ASMIAACLQQVL 834
Q + + F LP ++L A + D+ + D + KP++ A++ A V
Sbjct: 707 QQI--RSLQLDFSLPCIMLGAVSKPHDKEE------LFDAWLTKPIKYANLWKAITDLVK 758
Query: 835 STENKRQ------------------------AGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
+ +N +Q G NGS H L +ILV +DN V
Sbjct: 759 AQQNSQQYSEKQQNNCDTTAKSFSQDANSLSGAHGSGNGSGNHPPL----RILVAEDNPV 814
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N+MV L K + + AA+ L+ L+ +D FMD+QMPE+DG EAT +I
Sbjct: 815 NQMVVLRILAKLDYSGDLAANGLEVLEALER-QPYDIIFMDLQMPEIDGLEATEQI---- 869
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
K E I+A TA+V C GMD Y+SKP+ E +
Sbjct: 870 ----------------IEKWGEDRPKIIAATANVQQEDQAACFAAGMDDYISKPYALEQI 913
Query: 991 YRELAKF 997
L K+
Sbjct: 914 QGMLTKW 920
>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
Length = 1135
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 201/666 (30%), Positives = 320/666 (48%), Gaps = 117/666 (17%)
Query: 331 WTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVS 390
W + T + G ++G YG + I ++ ++E K AEAA+ AKS FLA +S
Sbjct: 380 WMSTTKLPLISPAGDVIGT--YGVSRDITPMKLAEQALREAKDAAEAANRAKSDFLANMS 437
Query: 391 HEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLEL 450
HEIRTP+N I+GM L++DTDL QRDY + G++L+ +IN++LD +KIEA +L +
Sbjct: 438 HEIRTPLNAIIGMTELVMDTDLKVAQRDYLRMVLESGESLLGIINDILDFSKIEAGRLHV 497
Query: 451 EAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSV 510
+ F LR L D + S ++ K +ELA VS VP+ V GD R RQ+I NL+GN++
Sbjct: 498 DEQPFRLRDSLGDTMKSLSNRAHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNAL 557
Query: 511 KFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNS 570
KFTERG + + V + RT A+ TL + G+ G +
Sbjct: 558 KFTERGEVVLDVSVESRT-----AEQVTLHFKVQDTGI---GIAK--------------- 594
Query: 571 WDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQA 630
DKF+ + +A F+ S + GG TG+G+ +SA+
Sbjct: 595 -DKFESIFEA--FEQADS--STTRRYGG------------TGLGLAISAR---------- 627
Query: 631 DSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQ 690
LVELM+G+I S GSTF FT G E + + Q
Sbjct: 628 --------------------LVELMQGKIWVESEVGQGSTFHFTLNLGVEAEGSVQPLAQ 667
Query: 691 SKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE 750
P GL+ ++VD+ + L L ++ M I + A+ L +
Sbjct: 668 E------PQLHGLRVLIVDDNQTNRRI----LEELTLLWGMRPRIAAGAIEARRELQHAI 717
Query: 751 DKFQPDIILVEKDCWISGEDSGFN--AQLLDWKPNGHVFKLPKLILLATNISKDECDKAK 808
D+ +P I L+ D + GED GF+ A + + V ++++L + ++ + +
Sbjct: 718 DQGEP-IRLIITDAQMPGED-GFSLTASIRSLENMPAV----EILMLTSGDRLEDLSRCQ 771
Query: 809 AGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH--QGLLRGKKILVVD 866
G A +I KP++ S + + ++ QA R VP S+ + ++IL+ +
Sbjct: 772 QLGIAGYLI-KPVKQSELYNSIVGIMG-----QAPRAVPMASAMAVPERSANSRRILLAE 825
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRI 926
D+ N+ +A G L+++G V A++ A+++ +S FD MD+QMPE+DG EAT I
Sbjct: 826 DSLANQKLALGLLERWGHRVVVASNGIEAIERYRS-ESFDLILMDVQMPELDGNEATMAI 884
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R++E + E H+PI+AMTA + ++CLK GMD Y+ KP
Sbjct: 885 REIERRTGE------------------HIPIVAMTAHALQGDREQCLKAGMDDYLMKPIR 926
Query: 987 EENLYR 992
L++
Sbjct: 927 ARQLFQ 932
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 28/152 (18%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDA------CFM 910
L G ++L+VDDN NR + +G AA A A +LQ H D
Sbjct: 671 LHGLRVLIVDDNQTNRRILEELTLLWGMRPRIAAGAIEARRELQ--HAIDQGEPIRLIIT 728
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
D QMP DGF T IR +E+ + IL +T+
Sbjct: 729 DAQMPGEDGFSLTASIRSLENMPA--------------------VEILMLTSGDRLEDLS 768
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
C + G+ GY+ KP ++ LY + P
Sbjct: 769 RCQQLGIAGYLIKPVKQSELYNSIVGIMGQAP 800
>gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
Length = 848
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 200/672 (29%), Positives = 311/672 (46%), Gaps = 150/672 (22%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+A+AAD AKS+FLAT+SHEIRTPMNG+LGM LL TDL + QR + G AL+ +
Sbjct: 270 KAKAADRAKSEFLATMSHEIRTPMNGVLGMAELLTRTDLDTRQRTFTDVILKSGNALLEI 329
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KI+A ++ L F+L +DV +L S + K IELAV ++ +P+ ++G
Sbjct: 330 INDILDFSKIDAGQMVLAPKPFSLVDTAEDVATLMSSRVVEKDIELAVRIAPGLPDQLIG 389
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DPGR RQI+TNLVGN+VKFTE+GH+ V+++ +
Sbjct: 390 DPGRVRQILTNLVGNAVKFTEQGHVMVEINWKD--------------------------- 422
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+E DG EG S +++ S+ G I
Sbjct: 423 --------VEPEDG-------------EGASSRRLALSISVSDTG--------------I 447
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
GIP + VF F Q D S++R + GTG+GL+I+ LVELM GQI S GSTFSF
Sbjct: 448 GIPPDKIDAVFDKFSQVDGSSTRKHEGTGLGLAIATRLVELMGGQIKLESTVGEGSTFSF 507
Query: 674 TA---VFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
T V+G +++++ LP G +G + +V+D+ + + + G
Sbjct: 508 TVEMDVYG----------GETETKGLPAEGLEGSRVLVIDDNAINRMILTEQMRGWG--- 554
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
++ N L + I L+ D + G G A+ + P +
Sbjct: 555 -FDCVAVESGEVGINLLRHARSNLGIGIDLLVLDFQMPGMTGGEVARAIRADP---LIAD 610
Query: 790 PKLILLATNISKDECDKAKAGGFADTV-----IMKPLRASMIAACLQQVLSTENKRQAGR 844
++++L+ S D+ D+ + D++ ++KP+R + + +Q L K Q R
Sbjct: 611 TQILVLS---SIDQADQLE---MLDSLCVFAQLVKPVRTAQLRQTVQAALRQAVKSQESR 664
Query: 845 GVP-----NGSSF---------------HQGLLRGKK------------------ILVVD 866
G P NG++F +G ++ +LV +
Sbjct: 665 GRPAPAQANGAAFDATEATSVATTQAARSEGPMQPVSNPVLADAPPLSMQREEPLVLVAE 724
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRI 926
DN +N++V +L+ G E A + + A+ K D MD+ MPE++G EAT I
Sbjct: 725 DNQINQIVFQQSLQGMGVNHELAINGREAVTKWSELRP-DIVLMDVSMPELNGLEATAEI 783
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R +E++ DG A PI+A+TA + D CL GMD Y+SKP
Sbjct: 784 RAIEAR------------DGLAP-----TPIIAVTAHTLKGDEDRCLAAGMDDYMSKPIS 826
Query: 987 EENLYRELAKFF 998
E L + ++
Sbjct: 827 PEKLAAMIERWL 838
>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
Length = 944
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 202/661 (30%), Positives = 306/661 (46%), Gaps = 124/661 (18%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + + + D ++ + AEAA+ AKS FLAT+SHEIRTPMN I+GM LLLD L
Sbjct: 241 GRQLGFIAIYHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRAL 300
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
+ QRD+ T + +AL+ L+N+VLD +KIEA + E E F+LR ++ VL L + ++
Sbjct: 301 TEEQRDFVATIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRA 360
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
KG++L ++ +P+ ++GD R RQ++ NLVGN++KFTE G V V
Sbjct: 361 SEKGLDLGCDLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSV---------- 410
Query: 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
E L GGTE
Sbjct: 411 ----EGLALGGTE----------------------------------------------- 419
Query: 593 MASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV 652
G+ D L V+DTG+GIP + +F PF Q D+S SR +GGTG+GL+ISK LV
Sbjct: 420 -----GAADWELTFSVQDTGLGIPDDRRTGLFQPFNQLDASVSRRFGGTGLGLAISKRLV 474
Query: 653 ELMRGQISFVSR--PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
E M G I S P G+TF FT + +Q + +G + +VVD+
Sbjct: 475 EAMGGTIWVESEGVPGQGTTFRFTLRAQAAPQAYAVQPRQEQGL-----LQGRRVLVVDD 529
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
+ + L G++ S+S DA + + G + D +L+ D + G D
Sbjct: 530 NALFRRLLGRQLQAWGLVPVESASGMDALAQLEAGASF-------DAVLI--DHHMPGLD 580
Query: 771 SGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM----I 826
A+ + + L+L++T + + G V+ +PL+ S +
Sbjct: 581 GTALAERIRQREETRAL---PLVLVSTPGRRGNPPE----GLFAGVLSRPLKDSQLYDAL 633
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK----ILVVDDNGVNRMVAAGALKKF 882
+C Q L + + R P+ + G G IL+V+DN N+ +A L++
Sbjct: 634 VSCFSQHLPQLPEPRQTR--PSRAGPFPGERPGDTVPLDILLVEDNATNQKLALLVLERL 691
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ-MESKANEQMMNGG 941
G + A + + AL L S +DA MD+QMPEMDG EATRRIRQ + KA
Sbjct: 692 GYRADVALNGRQALQAL-SQKRYDAVLMDLQMPEMDGLEATRRIRQELPPKAQPW----- 745
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
++AMTA+ + + ++C GMD ++ KP E L A + +
Sbjct: 746 ---------------VIAMTANAMDSDREQCFSAGMDDFLGKPIRVEALT---AALLRCQ 787
Query: 1002 P 1002
P
Sbjct: 788 P 788
>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1547
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 200/675 (29%), Positives = 320/675 (47%), Gaps = 114/675 (16%)
Query: 352 YGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD 411
+G I + D +++ ++A+AA AKS+FLA +SHEIRTPMNG++GM LLL+TD
Sbjct: 812 FGIQQDITERVQDQERLRIATMQADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETD 871
Query: 412 LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK 471
L+ TQR YA+T + G+AL+AL+N++LD +KIE+ KLELEA+ F+LR LD+ S+ + K
Sbjct: 872 LNETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFK 931
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531
+ KG+E VP+ ++GDPGR RQI+TNLVGN+VKFTERG + V+V + E +
Sbjct: 932 AEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRS 991
Query: 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIIN 591
++++ +L+ +T G+ A DK L FQS + +
Sbjct: 992 QESQEFCMLHFSVR-----------DTGIGIPA-------DKVGDL-----FQSFSQV-- 1026
Query: 592 MMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651
D ++ TG+G+ +S Q L
Sbjct: 1027 ---------DASITRKFGGTGLGLAISKQ------------------------------L 1047
Query: 652 VELMRGQISFVSRPQVGSTFSFT---AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
E+M G + S G+TF FT A+ G + V +P ++A++V
Sbjct: 1048 AEMMGGDVGVDSVEGQGTTFWFTIRLALAGTAEAEV----------PVPADLLDVRALIV 1097
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLT--SSEDKFQPDIILVEKDCWI 766
D+ + L G+ KD + T + +D + II D +
Sbjct: 1098 DDNATNREILMTRLLGWGM---RPDEAKDGPTALGRLYTALAEDDPYHLAII----DMQM 1150
Query: 767 SGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
G D F + + + +L+++++ + + + K FA + KPLR +
Sbjct: 1151 PGMDGEFLGRTIR---ADQKLQDVRLVMMSSAGMQGDARRMKDIWFA-AFLAKPLRHDEL 1206
Query: 827 AACLQQVLSTEN-----KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
CL V++ + R + R + S R +IL+ +DN N+ VA LK
Sbjct: 1207 FDCLSLVMAGDEPQDLVTRHSAREEKSRSGKIDFSDRKARILLAEDNITNQQVALAMLKN 1266
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANE------ 935
FG + + A+ A+ L++ +D MD+QM EMDG ATRRIR E + E
Sbjct: 1267 FGLSADAVANGLEAIKALKTV-PYDLVLMDVQMLEMDGLAATRRIRAAEIRGRELEVRDQ 1325
Query: 936 --QMMNGGSSVDGT----------AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
+ + SS+ + ++ E +PI+AMTA + + C++ GMD Y++K
Sbjct: 1326 RLKSESQNSSIPESLNPLIPQSLNSRIPEFRIPIIAMTAHAMRGDRERCMEAGMDDYLAK 1385
Query: 984 PFEEENLYRELAKFF 998
P E L + L K+
Sbjct: 1386 PVEPGRLSQVLEKWL 1400
>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1346
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 221/726 (30%), Positives = 323/726 (44%), Gaps = 149/726 (20%)
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQF 385
+++ W+ F + LLV L + E D E +AE A AKS+F
Sbjct: 583 RSTRTWSDSEINLFALLAKLLVNAQLRQSR------EQDLKDAME---QAEIATQAKSEF 633
Query: 386 LATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
LA +SHEIRTPMNG++GM LLLDT+L QR A++ Q G+AL+ALIN++LD +KIEA
Sbjct: 634 LANMSHEIRTPMNGVIGMTDLLLDTELRPEQRSLAESIQSSGEALLALINDILDFSKIEA 693
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
+LELE+V FNL +L+D+ SL + ++ KG+EL VP V GDPGR RQI+TNL
Sbjct: 694 GRLELESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNL 753
Query: 506 VGNSVKFTERGHIFVKVHLAERTMVKTD--AKDETLLNGGTEEGVCRSGTGQ------FN 557
VGN++KFT +G + V V +E K+D A D LL + G+ G + FN
Sbjct: 754 VGNAIKFTHQGEVVVMVQKSEARSQKSDNSADDVLLLFTVQDTGI---GVPEDKIDLLFN 810
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
S ++A+ R KF GG TG+G+ +
Sbjct: 811 KFSQVDASTTR----KF----------------------GG------------TGLGLAI 832
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
S Q L E+M G++ S G F FTA
Sbjct: 833 SRQ------------------------------LAEMMGGEVGVQSEYGRGCKFWFTARL 862
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD 737
K+ ++ LP G ++VD+ + + L G+ V+ +S +
Sbjct: 863 TLQKK------QEEPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGVEVEQASEGHE 916
Query: 738 ASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLAT 797
A SE + IL D + G D +L+ N + K L++L +
Sbjct: 917 ALLILDR--VYSEGNYFAMAIL---DMHMPGMDGAELGRLIR---NTDILKDLPLVMLTS 968
Query: 798 NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK--------RQAGRGVPNG 849
+ + GF + + KP+R S + L VLS+ K R R +
Sbjct: 969 LGRPGDAKIFEEQGF-NAYLNKPVRQSELFDTLLTVLSSAGKAPGHSIITRHQAREIKRQ 1027
Query: 850 SSFHQGLLRGK-KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
S L++ K +LV +DN VN+ VA G L K G + + + A++ LQ+ +D
Sbjct: 1028 QS---ELIKFKGHVLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQN-QSYDLV 1083
Query: 909 FMDIQMPEMDGFEATRRIRQME-----SKANEQMMNGGSSVDGTAKRD---------ELH 954
MD+QMPEMDG EATRRIR E S+ Q+ + G + + E H
Sbjct: 1084 LMDVQMPEMDGLEATRRIRAAEDRNQRSEVRNQISEERNQSTGDRRWESQPLNPSTPEYH 1143
Query: 955 -------------------LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
+PI+AMTA +H + CL GMD YV+KP L L+
Sbjct: 1144 NPSIPKSFNPKIPQSLNPKIPIIAMTAGAMHQDRERCLDAGMDDYVTKPVNPGQLATVLS 1203
Query: 996 KFFKSK 1001
++ K +
Sbjct: 1204 RWLKKE 1209
>gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC
12472]
Length = 738
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 208/647 (32%), Positives = 302/647 (46%), Gaps = 139/647 (21%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M+E K AE A AKS FLA +SHEIRTPMN I+GM L L TDL QR+Y G
Sbjct: 1 MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDLDDQQRNYIGKIHNAG 60
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+L+ +IN++LD +K+EA KLELEA F L +LD V +L ++K+ +DK
Sbjct: 61 TSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKA-----------ADKG 109
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
E + G Q LVG++++ + V +LA + T+
Sbjct: 110 LELLFETAGDVPQ---GLVGDALRLGQ-----VLTNLAGNAIKFTE-------------- 147
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
TGQ + II + G + V L C
Sbjct: 148 -----TGQVSI------------------------------IIGQVERIG--DKVQLKFC 170
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIG+ Q R+F F QAD ST+R +GGTG+GL+I+K LVELM G + S P
Sbjct: 171 VHDTGIGMSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGW 230
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS+F F+ G E S+ + LP +GL+ +VVD+ V L +LG
Sbjct: 231 GSSFIFSCWLGVSAE------TDSRRQSLPKEIRGLRVLVVDDNQSAVDVLCAQLKQLGF 284
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQP--DIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
V+ + +A S + +D Q D+ V+ W+ E G A
Sbjct: 285 EVQGCLNGHEALSKVR------QDCLQKPFDVAFVD---WMMPEMDGLEA---------- 325
Query: 786 VFKLPKL-----ILLATNISKDECD-KAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
V ++ ++ I++ T +DE KA+A G D ++KP+ S + L +V
Sbjct: 326 VRRMRQVSRKMRIVMVTAFGRDEIRVKARAAG-CDAFMVKPVNLSQLYDVLLEVF----- 379
Query: 840 RQAGRGVPNGSSFHQGL-----LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
G G G S G +L+V+DN +N+ +A L+ GAT+ AA+ +A
Sbjct: 380 ---GFGRSGGLSLFDETDQLPRFDGAHLLLVEDNRINQQIAIELLEGTGATITVAANGQA 436
Query: 895 ALDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
ALDKL + P FDA MD+QMP MDG EAT RIR ++
Sbjct: 437 ALDKLLAYGPKAFDAVLMDVQMPVMDGIEATGRIR--------------------SQPGF 476
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+ LP++AMTAD + + CL GM +++KP + L+ LA++ +
Sbjct: 477 IDLPVIAMTADALVEERERCLAAGMVDHIAKPIDPHILFSTLARWVR 523
>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
Length = 919
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 298/630 (47%), Gaps = 109/630 (17%)
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443
+FLA+VSHEIRTPMNGI+GM +L L T+L+ QR+Y + +I AL+++IN+VLD +KI
Sbjct: 183 EFLASVSHEIRTPMNGIIGMTSLALQTELTQEQREYLEMVKISADALLSIINDVLDFSKI 242
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
EA KLE+E V+F+ I+ D + + ++ K +ELA V VPE ++GDP R RQ++
Sbjct: 243 EAGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLELAYDVGPDVPEALVGDPLRLRQVLV 302
Query: 504 NLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLE 563
NLV N+VKFT+ G + V+ + R + + EE
Sbjct: 303 NLVSNAVKFTDAGEVVVRAEVDSRAPLTPE-----------EEASA-------------- 337
Query: 564 AADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERV 623
D++G S + A + V L V V DTGIGI Q V
Sbjct: 338 ---------------DSQGTPS------LYAGEVLGDAVVLRVSVIDTGIGIAPEKQRVV 376
Query: 624 FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEY 683
F F QAD ST+R YGGTG+GL+I LVE+M G+I S GSTF FT +
Sbjct: 377 FDAFAQADGSTTRKYGGTGLGLTICARLVEMMGGKIWIESEAGKGSTFHFT-----LQLR 431
Query: 684 VFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
E +S+ ++P G K ++ D+ + + G M + D+ + A
Sbjct: 432 ALEGAARSRRLEIPKDLLGTKVLIADDNATARRILADTIEGWG----MKAVPVDSGAAAI 487
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---KPNG----------HVFKLP 790
L SED + + G S F ++D K +G + K
Sbjct: 488 AAL--SEDSGVWALPWGKPGGNAVGPSSSFGLAIVDARMPKVDGFAVVEHCRKREILKGR 545
Query: 791 KLILLATNISKDECDKAK-AGGFADTVIMKPLRASMIAACL--------QQVLSTENKRQ 841
L+LL++ ++ + + + G FA ++ KP++ S + + + L + + R+
Sbjct: 546 VLMLLSSTSAQADVARCRDLGVFA--MVTKPVKTSHLQEAVFHAFGVPTRTSLRSADPRR 603
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
A G P RG ++LV +DN +N+ + L++ G V + + A++K+
Sbjct: 604 AAPG-PRA--------RGLRVLVAEDNAINQKLMRRWLERQGHHVHIVENGRLAVEKIAG 654
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D +D++MPEMDG +A + GG H+P++ +T
Sbjct: 655 GQ-YDVALLDVEMPEMDGLQAA------RVVRARERREGG------------HMPLIVVT 695
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLY 991
A + + CL+ G DGYVSKP + E LY
Sbjct: 696 AYAMKGDRERCLRAGFDGYVSKPVQVEELY 725
>gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
versatilis Ellin345]
gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
versatilis Ellin345]
Length = 1326
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 195/644 (30%), Positives = 294/644 (45%), Gaps = 140/644 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A KS FLA +SHEIRTPMN I+GM L L T+LS QRDY QI L+ +I
Sbjct: 579 AEDATRTKSDFLANMSHEIRTPMNAIIGMSHLALKTNLSPQQRDYLNKIQISSHHLLGVI 638
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL +E++ F+L +L+ + +L EK+ KG+EL +S VP ++GD
Sbjct: 639 NDILDFSKIEAGKLNVESIDFSLEKVLETLANLIGEKASAKGLELIFDISPDVPHNLIGD 698
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
P R QI+TN N+VKFTE G I + + ERT DE LL
Sbjct: 699 PLRLGQILTNYASNAVKFTEHGEIVIGAKVQERT------DDEVLLYFAVR--------- 743
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
+T GL A + F+ Q++ S +GG TG+G
Sbjct: 744 --DTGLGLTAEQKARLFQSFQ--------QADTSTTR---KHGG------------TGLG 778
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +S Q L LM G++ S P GSTF FT
Sbjct: 779 LAISKQ------------------------------LSALMHGEVGVESEPGKGSTFWFT 808
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPP--GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
A G I QSK++ P +G + +VVD+ V L+ + V
Sbjct: 809 ARMG---------IGQSKADKYLPVSDLRGRRVLVVDDNESARKVLDEMLSSMTFQV--- 856
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH------- 785
T NG + D+ + + +S ++ LDW+ G
Sbjct: 857 --------TTANGGHEAIDQVRQ----------AAQAESPYDIAFLDWRMPGMDGIETAK 898
Query: 786 ------VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL--STE 837
+ + P+++++ T ++E + A + V++KP+ AS++ + VL S +
Sbjct: 899 AIRGLGLERSPRMVMV-TAYGREEVMRGAAEAGIEDVLIKPVGASLLFDTIMAVLGGSRQ 957
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
RQ+ G N + H L+G +L+ +DN N+ VA G L + G VE A K AL
Sbjct: 958 EDRQS-EGSDNAIAAHLADLKGAVVLLAEDNEFNQQVATGLLNEVGVNVEIAGDGKQALA 1016
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
+L + +DA MD+QMPEMDG ATR IR+ + LPI
Sbjct: 1017 RL-AERTYDAVLMDMQMPEMDGLAATREIRKQARFKD--------------------LPI 1055
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+AMTA+ + + C+ GM+ +++KP + ++L+ L K+ K +
Sbjct: 1056 IAMTANAMEQDKERCIAAGMNDHIAKPIDPDHLFNTLLKWIKPR 1099
>gi|359436217|ref|ZP_09226335.1| sensor protein [Pseudoalteromonas sp. BSi20311]
gi|358029077|dbj|GAA62584.1| sensor protein [Pseudoalteromonas sp. BSi20311]
Length = 1111
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 198/672 (29%), Positives = 314/672 (46%), Gaps = 136/672 (20%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
FL IG L+G + ++ ++ E + K +E AE A +AKS+FLA++SHEIRTPMN
Sbjct: 567 FLIAIGALIGSL--HSSEQRIETEAELVKAKE---AAEQAVIAKSEFLASMSHEIRTPMN 621
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
G+LGML L+ T L QR + + AQ ++L+ +IN++LD +KIEA KL++E + FNL
Sbjct: 622 GVLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLP 681
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+L +++ F+ K+ + +L + + ++ DP R RQI+ NL+ N+VKFT+ G +
Sbjct: 682 KLLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAVKFTQNGQV 741
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
V T ++TL N E + +G G S DK K L
Sbjct: 742 LV-----------TATIEKTLDNTTLECAIIDTGIGI--------------SLDKQKQLF 776
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
D+ F QAD+ST+R Y
Sbjct: 777 DS----------------------------------------------FTQADASTTRQY 790
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFE-DIKQSKSEDLP 697
GGTG+GL+I K L ELM G++S S P GSTF+F+ + F+ D + +++
Sbjct: 791 GGTGLGLAIVKQLCELMGGEVSVNSLPNEGSTFAFSVNITSVIDQAFDLDCQHIQAK--- 847
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDI 757
+ ++VD + A +T+ L G V S++ D S+ + PD+
Sbjct: 848 ------RILIVDNSEMNATITEKQLMLWGADV---SAVCDYEEV--EAYISNHQQTPPDV 896
Query: 758 ILVEKDCWISGEDSGF---NAQLLDWKPNGHVFKLPKLILLATNISKDEC---DKAKAGG 811
++ DS F A L K + K LI+ + SK DK A
Sbjct: 897 AII---------DSSFLEPVAHLQAEKLKHFLEKSHVLIMAPMSSSKSSLFYGDKETA-- 945
Query: 812 FADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN 871
+I KPL A + L + E ++ N +G +L+V+DN VN
Sbjct: 946 ----LIFKPLTAIDLYDTLVKGTLAEQPKEVELSAINTPKKAKG-----HVLLVEDNKVN 996
Query: 872 RMVAAGALKKFGATVECAASAKAALDKLQ--SPHCFDACFMDIQMPEMDGFEATRRIRQM 929
++VA LK+ T + A + AL KL + + + MD QMP MDG++AT IR
Sbjct: 997 QVVAGALLKQAELTFDIAEDGEDALTKLNQATANTYQLILMDCQMPIMDGYQATMAIR-- 1054
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
+G A ++ +PI+A+TA+ +H ++CL GM+ Y+SKP +
Sbjct: 1055 ---------------EGLAGQENRAIPIIALTANAMHGDKEKCLNAGMNDYLSKPLDGPA 1099
Query: 990 LYRELAKFFKSK 1001
++ +L ++ +K
Sbjct: 1100 MHAKLQQWLSAK 1111
>gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
Length = 683
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 189/623 (30%), Positives = 305/623 (48%), Gaps = 104/623 (16%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS FLA++SHEIRTPM+ ILGM LLL+T LS Q+ Y + + G+ L+ +IN++LD
Sbjct: 152 AKSDFLASMSHEIRTPMHAILGMAELLLETPLSPEQQRYVEIFRNAGENLLNIINDILDI 211
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+K+EA LELE + F+L I++ + + ++ KG+ELA + VP ++GDP R +Q
Sbjct: 212 SKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLELACHILPDVPVNLIGDPVRLQQ 271
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
I+ NLVGN++KFTE+G + V V + T L GG E G G
Sbjct: 272 ILINLVGNAIKFTEKGEVVVHV------------EKSTELTGGPETGTEEGGK------- 312
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
V L+ + DTGIGIP
Sbjct: 313 -----------------------------------------VELLFSIADTGIGIPQEKI 331
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG-K 679
+++F F QADSST+R +GGTG+GLSIS+ LVE+M G I S G+T +FTA F +
Sbjct: 332 DKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGGHIRLDSEVGKGTTATFTARFSVQ 391
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ +I ++ E L GL+ ++D+ + + L+ G S D +
Sbjct: 392 AEGKKLAEIVEAGVEKL----TGLRTFIIDDNATNRMILREILSGWG-------SCSDEA 440
Query: 740 STAKNGLT---SSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILL 795
+ G+ + + +P D++L+ D + G D A+ + P+ + +P +++L
Sbjct: 441 DGGERGIVKMQKAREAGKPYDLLLL--DYQMPGLDGFGVAERIQRNPS--LAGIP-IVML 495
Query: 796 ATNISKDECDKAKAGGFADTVIMKPL-RASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ 854
+++ + + + + G A + + KP+ RA + A L + T + AGR +
Sbjct: 496 TSDLGRGDPRRFRELGIA-SFLTKPVKRAELKNAILTTISKT---KVAGRKPAPQAPAAP 551
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
R IL+ +D+ NR++ LK ++ A + ALDK ++ +D FMDIQM
Sbjct: 552 ESHRPLSILLAEDSEDNRLLLMSYLKSRPYRIDIAENGVIALDKFKTGR-YDLVFMDIQM 610
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
PEMDG+ ATR IR+ E + + PI+A+TA + L
Sbjct: 611 PEMDGYTATREIRKWEREHQLR-----------------ETPIVALTAYAYKEDRRKSLD 653
Query: 975 CGMDGYVSKPFEEENLYRELAKF 997
G +G++ KP ++ L ++++
Sbjct: 654 AGCNGHLVKPIKKAVLLEAISEY 676
>gi|345863470|ref|ZP_08815681.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345125548|gb|EGW55417.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 1149
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 198/649 (30%), Positives = 303/649 (46%), Gaps = 124/649 (19%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K +AE+A AKS+FLA +SHEIRTPMNG+LGM LL T L Q+++ + G +
Sbjct: 483 EAKEKAESAAKAKSEFLAMMSHEIRTPMNGVLGMAELLAGTKLDDEQQEFLEVITQSGNS 542
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ +IN++LD +K EA K+ELEA+ F+L + D + L S + +KG+EL + ++P
Sbjct: 543 LLGIINDILDFSKAEAGKIELEAISFDLERTIYDAVRLLSANASSKGLELIISYPPELPR 602
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GD GR RQIITNL GN++KFT++GHI + V + T +G
Sbjct: 603 QVMGDAGRIRQIITNLAGNAIKFTQQGHIAINVETTKAT-----------------DGTS 645
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
R +T G+ A + + F Q+++S GG
Sbjct: 646 RFRISVIDTGIGIPEAQQQRLFKSFT--------QADSSTTR---KYGG----------- 683
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
TG+G+ +S Q LVELM G I S GS
Sbjct: 684 -TGLGLAISKQ------------------------------LVELMGGSIGVSSTQGEGS 712
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TF G + Q + LK +++D+ + + + L G+ +
Sbjct: 713 TFWLEIPLG---------LSQPREPLGHADLSRLKCLILDDNLLNQRIFRDQLRSCGMQI 763
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDSGFNAQLLDWKPNGHVFK 788
+ + D + T + S+ F DI L++ + I+GE + + +K
Sbjct: 764 H-TVTTGDEALTLATEMASANKPF--DIFLLDFNLPGINGEQIALRLRQMP------AYK 814
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST--ENKRQ----- 841
+ILL ++ ++ + + GF D ++KP+ ++ ++ V+S ++K Q
Sbjct: 815 ETPMILLTSSGNRGDAKHFEEVGF-DAYLIKPVPHQILHEAIEGVVSNTLQHKEQEIITQ 873
Query: 842 ----AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
G P+ + H KIL+V+D N+ VA+ L K G TVE A + + AL+
Sbjct: 874 YHVIEGHTQPSNKTEH----IDAKILLVEDLLPNQKVASSVLSKMGCTVEIADNGRIALE 929
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
+L + FD MD QMPEMDG EATR IRQ E GT H PI
Sbjct: 930 RL-AEDSFDIVLMDCQMPEMDGLEATRAIRQRERDT------------GT------HTPI 970
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
+AMTA+ + + +CL+ GMD ++SKPFE E L + L K+ K S A
Sbjct: 971 IAMTANNMASDRKQCLEAGMDDFISKPFEREQLAKLLGKWLNPKSPSAA 1019
>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
Length = 1384
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 204/679 (30%), Positives = 316/679 (46%), Gaps = 117/679 (17%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + K D + + + A AA AKS+FLAT+SHEIRTP+N ++GM LLLDT L
Sbjct: 639 GGELERQKTATDATDLAKARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSL 698
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
S Q ++ +T + G AL+ LIN++LD +KIE+ K +LE F+L L++ + L K
Sbjct: 699 KSDQTEFVETIRSSGDALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKV 758
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
+G+EL F+ + P V+GD R RQI+ NL+ N+VKFT G + V V + R +
Sbjct: 759 SEQGLELVYFIDPETPTIVIGDVTRVRQILVNLLSNAVKFTSDGEVLVSV--SGRKL--- 813
Query: 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
EE V Q + + +D + W ++
Sbjct: 814 ----------EIEENV------QNLAVENISESDTCDIWPAYE----------------- 840
Query: 593 MASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV 652
+ V+DTGIGIP + R+F F Q DSST+R YGGTG+GL ISK L
Sbjct: 841 -----------IQFSVKDTGIGIPANRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRLA 889
Query: 653 ELMRGQI------------------------SFVSRPQVGSTFSFTAVFGKCKEYVFED- 687
E+M GQ+ S + GSTF FT V KC ++
Sbjct: 890 EMMGGQMWVESMGVVGGNPPATYRLPDLYEHSAAVNEKSGSTFYFTIV-SKCSIQTVQNK 948
Query: 688 -IKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGL 746
I+ + + ++VD+ + G++V+ + + A L
Sbjct: 949 FIQTNYVNGSQHKLVDKRILIVDDNSTNRTILLRQTESWGMIVRTAENANRALE-----L 1003
Query: 747 TSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDK 806
++E+KF II + K I G G N LP I+L +++ + E +
Sbjct: 1004 IATENKFDVAIIDM-KMPEIDGLSLGKKITEYPIYQN-----LP--IILLSSLGQQEIN- 1054
Query: 807 AKAGGFAD----TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK-- 860
F+D +VI KP++ S + L + S ++ + + N ++ + K
Sbjct: 1055 -----FSDKLLGSVINKPIKQSQLYEALLNIFSGQDVKVKFKN-NNKRNYQTIPVLAKEL 1108
Query: 861 --KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEM 917
+IL+ DD+ VN+ VA L++ G + A++ L + + P +D MD+QMP M
Sbjct: 1109 PLRILLADDHLVNQKVALRILQRMGYRADLASNGLEVLAAVFRLP--YDVVLMDVQMPLM 1166
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG EA+R I++ A + S KR I+AMTA+V+ +EC+ GM
Sbjct: 1167 DGLEASRHIQREYENATKY------SQKSPQKRPR----IIAMTANVMQGYREECIAAGM 1216
Query: 978 DGYVSKPFEEENLYRELAK 996
D Y+SKP + E L + L+K
Sbjct: 1217 DDYISKPIQIEELIKALSK 1235
>gi|409992461|ref|ZP_11275649.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
gi|409936686|gb|EKN78162.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1494
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 194/677 (28%), Positives = 297/677 (43%), Gaps = 130/677 (19%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++E K+ AE A AKS+FLAT+SHEIRTPMN ++GM LLLD +L+ QRD+ +T + G
Sbjct: 718 LEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSG 777
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KIE+ KLELE F LR L++ L L S ++ KG+ELA +
Sbjct: 778 DALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPST 837
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P+ +LGD R RQ++ NLV N++KFT G + + V
Sbjct: 838 PKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATH--------------------- 876
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
D + KF D F + ++ + G
Sbjct: 877 -----------------PDAKKDVKKF----DDSDFTESHYVLQFEVRDTG--------- 906
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI-------- 659
IGIP +R+F F Q D+ST+R YGGTG+GL+IS+ L +LM G++
Sbjct: 907 -----IGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLMNGKMWVASWVNL 961
Query: 660 ---------SFVS-----------RPQV---GSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
S +S RPQV GS F FT V C + D+ + S+D
Sbjct: 962 LDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIV---CSGFNTPDLGEF-SDDF 1017
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756
G K ++V+ + + + G+ + T + L D + D
Sbjct: 1018 ---LHGKKVLIVEHHDINQKLLIRQVKSWGM-------VPVRVKTGADALKVLHDNPELD 1067
Query: 757 IILV------EKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG 810
+I++ + ++ Q++ K F L++ + D + +A
Sbjct: 1068 LIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPF---NLVMFNYASNTDSLRRLEAQ 1124
Query: 811 GF-ADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK----KILVV 865
G ++ KPL+ S L Q+ + + + N S + + +IL+
Sbjct: 1125 GVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDPAIPQPHANLRILLA 1184
Query: 866 DDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRR 925
+DN N+ VA L++ G + A + LD L +D MD+QMPEMDG E ++
Sbjct: 1185 EDNVTNQKVAIKLLERLGYRADIAGNGLEVLDALNRQQ-YDVILMDVQMPEMDGLETSKH 1243
Query: 926 IRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
I S GS + R I+AMTA+ + + CL GMD Y++KP
Sbjct: 1244 ICAAYSD--------GSDMGPRKPR------IIAMTANAMQGDREMCLNAGMDDYITKPV 1289
Query: 986 EEENLYRELAKFFKSKP 1002
E L LAK P
Sbjct: 1290 RREALAEALAKCHPISP 1306
>gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913]
gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913]
Length = 1117
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 204/677 (30%), Positives = 320/677 (47%), Gaps = 140/677 (20%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
FL +G L+G LY + I + E K +E AE A +AKS+FLA++SHEIRTPMN
Sbjct: 567 FLIAVGALIGS-LYSSQQRI-ETEAQLVKAKE---AAEQAVIAKSEFLASMSHEIRTPMN 621
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
G+LGML ++ T L Q+ + + AQ ++L+ +IN++LD +KIEA KL++E + FNL
Sbjct: 622 GVLGMLNIVKATQLDQQQKHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLP 681
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+L +V+ F+ K+ L + + + DP R RQI++NL+GN+VKFT+ G I
Sbjct: 682 RLLGEVVESFALKAEQNNTTLILDATHITSSEFISDPNRLRQILSNLIGNAVKFTQNGEI 741
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
V + T D T+L E + SG G S +K HL
Sbjct: 742 LVTAKI-------THTLDATVL----ECAIADSGIGI--------------SAEKQPHLF 776
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
D+ F QAD+ST+R Y
Sbjct: 777 DS----------------------------------------------FTQADTSTTRQY 790
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
GGTG+GL+I K L ELM G+++ S P GSTFSF F K + + ++Q ++
Sbjct: 791 GGTGLGLAIVKQLCELMSGEVNVSSTPNKGSTFSF---FIKI---IPQLVQQHEAYQ--- 841
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII 758
K + V+D+ + + + L R G V S+I D S + + + S ED P+I+
Sbjct: 842 AIKNKRIWVIDDCLLNTTIAKKQLTRWGGKV---STICDYLSIS-DYINSHEDT-PPNIV 896
Query: 759 LVEKDCWISGEDSGFNAQLLDW-----KPNGHVFKLPKLILLATNISKDECDKAKAGGFA 813
LV+ + + + AQ L K N H+ + + N + +
Sbjct: 897 LVDSALF----EPLYEAQALALKQFLIKSNSHLIIMAPMSYTNKNATLPLTE-------- 944
Query: 814 DTVIMKPL------RASMIAACLQQV-LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVD 866
+T++ KPL A + ++Q + T+ K A V + +L+V+
Sbjct: 945 ETLVFKPLTPFDLQNALTAKSTIEQTHVDTQLKSLAATEVMTDT-------LAAHVLLVE 997
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSP-HCFDACFMDIQMPEMDGFEATR 924
DN +N++V A LK+ T E A + A++KL Q+P + + MD QMP MDG++AT
Sbjct: 998 DNKINQVVTAAFLKQLNVTFEIAENGAEAVEKLNQNPANTYQLILMDCQMPTMDGYQATI 1057
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
IR +G A + ++ I+A+TA+ + D+CL GMD Y++KP
Sbjct: 1058 AIR-----------------EGKAGKVNKNITIIALTANAMQGDKDKCLATGMDDYLTKP 1100
Query: 985 FEEENLYRELAKFFKSK 1001
L+ +L ++ SK
Sbjct: 1101 LNATTLHSKLQQWLTSK 1117
>gi|405363367|ref|ZP_11026321.1| two-component hybrid sensor and regulator [Chondromyces apiculatus
DSM 436]
gi|397089775|gb|EJJ20674.1| two-component hybrid sensor and regulator [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 915
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 202/658 (30%), Positives = 306/658 (46%), Gaps = 129/658 (19%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + + + D ++ + AEAA+ AKS FLAT+SHEIRTPMN I+GM LLLD L
Sbjct: 215 GRQLGFIAIYHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRAL 274
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
+ QRD+ T + +AL+ L+N+VLD +KIEA + E E F+LR ++ VL L + ++
Sbjct: 275 TEEQRDFVATIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLLAVRA 334
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
KG++L ++ +VP+ ++GD R RQ++ NLVGN++KFTE G V V
Sbjct: 335 SEKGLDLGCDIAPQVPQMLVGDASRIRQVLLNLVGNALKFTEHGGAVVSV---------- 384
Query: 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
EG SG A+G W
Sbjct: 385 -------------EGASVSG------------AEGAAEW--------------------- 398
Query: 593 MASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV 652
L V+DTG GIP + +F PF Q D+S SR +GGTG+GL+ISK LV
Sbjct: 399 ----------ALTFSVQDTGPGIPEDRRAGLFQPFNQLDASVSRRFGGTGLGLAISKRLV 448
Query: 653 ELMRGQISFVSRPQV--GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
E M G + S G+TFSFT + ++Q + P +G + ++VD+
Sbjct: 449 EAMGGTLWVESEGIAGRGTTFSFTLRAQSAPQAYAVHLRQEQ-----PLLQGRRVLIVDD 503
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
+ + L G+ ++S +A S + G D++L+ D + G D
Sbjct: 504 NALFRRLLGRQLRAWGVEPVETASGPEALSQFQAGTGY-------DVVLI--DHHMPGMD 554
Query: 771 SGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS-----M 825
A+ + + G LP L+LL+T + + G V+ +PL+ S +
Sbjct: 555 GTALAERIRREGQG----LP-LLLLSTPGRRGSPPE----GLFAGVLSRPLKTSQLYDAL 605
Query: 826 IAACLQQVLSTENKR--QAGRGVPNGSSFHQGLLRGKK----ILVVDDNGVNRMVAAGAL 879
I+ Q V R QA R P G+ G IL+V+DN N+ +A L
Sbjct: 606 ISCFSQHVPPVPGTRELQASRAGP-----FPGVRPGDSVPLDILLVEDNATNQKLALLVL 660
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ-MESKANEQMM 938
++ G + A + + AL + S +D MD+QMPEMDG EATRRIRQ + +A
Sbjct: 661 ERLGYRADVALNGRQALHAV-SQKRYDVVLMDLQMPEMDGLEATRRIRQELPPRAQPW-- 717
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
++AMTA+ + + ++C GMD ++ KP + L L +
Sbjct: 718 ------------------VIAMTANAMDSDREQCFSAGMDDFLGKPIRVDALTSALLR 757
>gi|373458202|ref|ZP_09549969.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371719866|gb|EHO41637.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 748
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 197/637 (30%), Positives = 309/637 (48%), Gaps = 115/637 (18%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++ K E A+ AK +FLA +SHEIRTPMNGILGM L L+T L++ QRDY +
Sbjct: 213 ELKKAKEETERANKAKDEFLANMSHEIRTPMNGILGMTELALETRLTAEQRDYLNVVKSS 272
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+AL+A+IN++LD +KIEA KL+LE + FNL ++ D++ + KS K IELA F+
Sbjct: 273 AEALLAIINDILDFSKIEAGKLDLEEIDFNLYDMIGDMIKPLAIKSNEKKIELAYFIDPD 332
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP F+ GDP R RQI+ NL+GN++KFTE+G + ++V AER D+ +L G +
Sbjct: 333 VPIFIKGDPIRLRQILINLLGNAIKFTEKGQVVLEVLKAERL------DDKIILKFGVHD 386
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGF-QSNASIINMMASNGGSEDVTLM 605
+G G R DK E F Q++ SI GG
Sbjct: 387 ----TGIGI-----------PREVQDKI-----FESFVQADTSITRKF---GG------- 416
Query: 606 VCVEDTGIGIPLSAQERVFMP---FMQADSS-TSRHYGGTGIGLSISKCLVELMRGQISF 661
TG+G+ + + M ++++ S+ SR GG G
Sbjct: 417 -----TGLGLAICMRLVRMMNGKIWLESPSTYPSRKKGGPG------------------- 452
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++F FTA + E + + L KGL +++D+ P+ + Q
Sbjct: 453 -------TSFFFTAQLHEA-----EHRETTPYRILQKNLKGLNVLLIDDNPINRSYFQKI 500
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF--NAQLLD 779
L + + V + S A K + +F D+I+ + E GF + Q+
Sbjct: 501 LEKNKLQVTTAESAFKALEILK-----TNQRF--DLIITDAQM---PEMDGFELSTQIRA 550
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
K +K +ILL ++ + + ++ K G + + KP++ + LQ L +
Sbjct: 551 LKN----YKKVPIILLTSSGMRGDSERCKQIGI-NAYLPKPVKLTDFLKALQVTLGLPQE 605
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+ + + + L R ILV +DN VN+ +A L+K G + A + L+KL
Sbjct: 606 EEVQPSLVTQYTVREVLPR-LHILVAEDNPVNQKLAIRLLEKNGYYADIAKNGLEVLEKL 664
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ H +D MD+QMPEMDG +AT++IR++E NG S H+PI+A
Sbjct: 665 KKNH-YDLILMDVQMPEMDGLQATQKIRELE--------NGKS-----------HIPIIA 704
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+TA + D CL MDGYVSKP +E L++E+ +
Sbjct: 705 LTAHAMKKDIDMCLNAAMDGYVSKPIRKEELFKEIER 741
>gi|359447438|ref|ZP_09237034.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
gi|358038719|dbj|GAA73283.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
Length = 789
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 193/678 (28%), Positives = 314/678 (46%), Gaps = 148/678 (21%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
FL IG L+G + ++ ++ E + K +E AE A +AKS+FLA++SHEIRTPMN
Sbjct: 245 FLIAIGALIGSL--HSSEQRIETEAELVKAKE---AAEQAVIAKSEFLASMSHEIRTPMN 299
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
G+LGML L+ T L QR + + AQ ++L+ +IN++LD +KIEA KL++E + FNL
Sbjct: 300 GVLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLP 359
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+L +++ F+ K+ + +L + + ++ DP R RQI+ NL+ N++KFT+ G +
Sbjct: 360 KLLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAIKFTQNGQV 419
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
V T ++T+ N E + +G G S DK K L
Sbjct: 420 LV-----------TATIEKTIDNTTLECAIIDTGIGI--------------SLDKQKQLF 454
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
D+ F QAD+ST+R Y
Sbjct: 455 DS----------------------------------------------FTQADASTTRQY 468
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFE-DIKQSKSEDLP 697
GGTG+GL+I K L ELM G++S S P GSTF+F+ + F+ D + +++
Sbjct: 469 GGTGLGLAIVKQLCELMGGEVSVNSLPNEGSTFAFSVKITSVIDQAFDLDCQHIQAK--- 525
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDI 757
+ ++VD + A +T+ L G V + ++ + S+ + PD+
Sbjct: 526 ------RILIVDNSEMNATITEKQLMLWGADVSVVCDYEEVET-----YISNHQQMPPDV 574
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGH---------VFKLPKLILLATNISKDEC---D 805
++ DS F +P H + K LI+ + SK D
Sbjct: 575 AII---------DSSF------LEPVAHPQAEKLKHFLEKSHILIMAPMSSSKSSLFYGD 619
Query: 806 KAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVV 865
K A +I KPL A + L + E ++ N +G +L+V
Sbjct: 620 KETA------LIFKPLTAIGLYDTLVKGTLAEQPKEVELSAMNTPKKAKG-----HVLLV 668
Query: 866 DDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ--SPHCFDACFMDIQMPEMDGFEAT 923
+DN VN++VA LK+ T + A + AL KL + + + MD QMP MDG++AT
Sbjct: 669 EDNKVNQVVAGALLKQAELTFDIAEDGEDALTKLNQATANTYQLILMDCQMPIMDGYQAT 728
Query: 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
IR +G A ++ +PI+A+TA+ +H ++CL GM+ Y+SK
Sbjct: 729 MAIR-----------------EGLAGQENRAIPIIALTANAMHGDKEKCLNAGMNDYLSK 771
Query: 984 PFEEENLYRELAKFFKSK 1001
P + ++ +L ++ +K
Sbjct: 772 PLDGPAMHAKLQQWLSAK 789
>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
Length = 1272
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 204/693 (29%), Positives = 326/693 (47%), Gaps = 125/693 (18%)
Query: 318 KMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEA 377
K+IC +H + T F V + H K+E++ ++ +AEA
Sbjct: 459 KVICEFHATPLYDKNGVKTGSFAMVSDI----------THRKKMEEELIVARD---KAEA 505
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
A AKS FLA +SHEIRTPMN ++GM L L TDL+ QRDY QI +L+ +IN++
Sbjct: 506 ATRAKSDFLANMSHEIRTPMNAVMGMTHLALQTDLTPKQRDYLHKIQISANSLLGVINDI 565
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK-GIELAVFVSDKVPEFVLGDPG 496
LD +KIEA K+ +E++ FNL +L+++ ++ + K R K GIE VL D G
Sbjct: 566 LDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLREKEGIE------------VLFDTG 613
Query: 497 RFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQF 556
+ LVG+ ++ ++ + V+LA ++
Sbjct: 614 A--DVPRQLVGDPLRLSQ-----ILVNLANNSI--------------------------- 639
Query: 557 NTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIP 616
KF +S +++ + G+ + L V DTGIG+
Sbjct: 640 ----------------KFT--------ESGEIVVSTKVVSQGNHVIVLQFSVRDTGIGLT 675
Query: 617 LSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676
++F F QAD+S +R YGG+G+GLSI + LV++M G+I S GSTF FTAV
Sbjct: 676 EEHMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWVESIYGKGSTFYFTAV 735
Query: 677 FGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK 736
+E + PP +GLKA+VVD+ + Q L V +++S +
Sbjct: 736 LRTVRE------SREACYIPPPELRGLKALVVDDNATSREIFQSMLECFSFDVTLAASGE 789
Query: 737 DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILL 795
+ + +P DI+++ D + G D ++ + K N + ++P +IL+
Sbjct: 790 EGLEEIGKSVGG-----RPYDIVVM--DWKLPGIDGIEASKRI--KKNTGLTRIPLVILV 840
Query: 796 ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQG 855
+ ++ +A+A G D ++KP+ AS++ + L+ E ++
Sbjct: 841 SAYAREEIMWRAEAAGL-DGFLIKPINASVMFDTIMNALAKEGGKEMPPPAEEEKKQASD 899
Query: 856 LLR---GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
LL+ G ++L+V+DN +N+ VA L G TV AA+ + A+D + H FDA MD+
Sbjct: 900 LLKSLEGARVLLVEDNEINQEVAMEILAAGGVTVSLAANGREAVDAVGMNH-FDAVLMDL 958
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMP MDG+ ATR IRQ D K LPI+AMTA + D+
Sbjct: 959 QMPVMDGYTATRTIRQ----------------DVRFK----DLPIIAMTAHAMADDPDKS 998
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
GM+ +++KP + E LY LA++ + G
Sbjct: 999 RHAGMNAHITKPIDPEVLYSTLAEWISAATPGG 1031
>gi|392557140|ref|ZP_10304277.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1112
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 193/667 (28%), Positives = 312/667 (46%), Gaps = 125/667 (18%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
FL IG L+G LY + I + E + +E AE A +AKS+FLA++SHEIRTPMN
Sbjct: 567 FLIAIGALIGS-LYSSEQRI-ETEAELVMAKE---AAEQAVIAKSEFLASMSHEIRTPMN 621
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
G+LGML ++ T L QR + + AQ ++L+ +IN++LD +KIEA KL++E++ FNL
Sbjct: 622 GVLGMLNIIQATSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIESIQFNLP 681
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+L +++ F+ K+ + +L + + ++ DP R RQI+ NL+ N+VKFT+ G +
Sbjct: 682 QLLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAVKFTQNGQV 741
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
V T ++TL N E + +G G S++K K L
Sbjct: 742 LV-----------TATIEKTLDNTTLECAIIDTGIGI--------------SFEKQKQLF 776
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
D+ F QAD+ST+R Y
Sbjct: 777 DS----------------------------------------------FTQADASTTRQY 790
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFE-DIKQSKSEDLP 697
GGTG+GL+I K L ELM G++S S P GSTF+F+ + F+ D + +++
Sbjct: 791 GGTGLGLAIVKQLCELMGGEVSVYSLPNEGSTFTFSVNITSVIDQAFDLDCQHIQAK--- 847
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDI 757
+ ++VD + A + + L G V K+ + N + PD+
Sbjct: 848 ------RILIVDNSEMNATIIEKQLTLWGADVSAVCDYKEVETYITNN-----QQTPPDV 896
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVI 817
+++ ++ +L + N H+ LI+ + SK G +I
Sbjct: 897 AIIDTS-FLEPVAHPLAEKLKHFLVNSHI-----LIMAPMSYSKSNL---FYGNNEAALI 947
Query: 818 MKPLRASMIAACLQQV-LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAA 876
KPL A + L +V L+ + K A N +G +L+V+DN VN++VA
Sbjct: 948 FKPLTAIGLYDTLVKVTLAAQPKELALPPAINTPKKAKG-----HVLLVEDNKVNQVVAC 1002
Query: 877 GALKKFGATVECAASAKAALDKLQ--SPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
LK+ T + A + AL KL + + + MD QMP MDG++AT IR
Sbjct: 1003 ALLKQAELTFDIAEDGEDALTKLNQANANTYQLILMDCQMPIMDGYQATMAIR------- 1055
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
+G A + +PI+A+TA+ + D+CL GM+ Y+SKP + ++ +L
Sbjct: 1056 ----------EGLAGLENQTIPIIALTANAMRGDKDKCLNAGMNDYLSKPLDGPAMHAKL 1105
Query: 995 AKFFKSK 1001
++ +K
Sbjct: 1106 QQWLSAK 1112
>gi|351729217|ref|ZP_08946908.1| multi-sensor hybrid histidine kinase [Acidovorax radicis N35]
Length = 1628
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 204/661 (30%), Positives = 302/661 (45%), Gaps = 146/661 (22%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E D + +EL AE + KS FLA +SHEIRTPMN I+GM L L + L+ Q DY
Sbjct: 854 RAEQDLRRAKEL---AEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLTERQHDY 910
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q G+ L+ +IN++LD +KIEA KL +E F L +L+ V + K+ KG+EL
Sbjct: 911 VSKIQQAGQHLLGVINDILDFSKIEAGKLMVEKQPFVLDRMLESVSDVVGYKAGAKGLEL 970
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
V+ VP NLVG+S++ G I + + A + T+
Sbjct: 971 VCDVAADVP--------------PNLVGDSLRL---GQILI--NFANNAIKFTE------ 1005
Query: 540 LNGGTEEGVCRSGTGQFN-TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
TG+ + + LEAA R
Sbjct: 1006 -------------TGEISIAVRVLEAAGNR------------------------------ 1022
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+ L V DTGIG+ R+F F QAD+ST+R YGGTG+GL+I K L ELM G+
Sbjct: 1023 ---LMLRFEVRDTGIGLTPEQMGRLFQSFQQADTSTTRRYGGTGLGLAICKSLAELMGGE 1079
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ S GSTF + AV E ++ PP +G + +VVD+ A V
Sbjct: 1080 VGVESTYGQGSTF-WVAV-------PLERGAPARVLLPPPDLRGRRVLVVDDNQTAATVL 1131
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L +G V+ + S +A L S + QP F LL
Sbjct: 1132 SDMLLAMGFEVEQAHSGLEALER----LRESMARHQP-----------------FGLLLL 1170
Query: 779 DW--------KPNGHV-----FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
DW + GH+ ++PK++++ +D A+A G DTV++KP+ AS+
Sbjct: 1171 DWHMPGMDGIQLAGHIRGLGMAQVPKMLMVTAYGREDVMRAARAQGI-DTVLIKPVNASL 1229
Query: 826 IAACLQQVL--STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG 883
+ L Q L ST + R+ P +RG +L+V+DN +N+MVA L + G
Sbjct: 1230 LFDTLMQPLEHSTYSPRRVVTPAPAADELPLA-IRGASVLLVEDNELNQMVAVELLLEAG 1288
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
V+ A + + ALD+++ +D MD+QMP MDG ATR++R
Sbjct: 1289 FAVDVAENGQIALDRIER-KAYDVVLMDMQMPVMDGETATRQLR---------------- 1331
Query: 944 VDGTAKRD--ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
RD +HLPI+AMTA+ + A C GM+ +V+KP E L+ L ++ + +
Sbjct: 1332 ------RDPRHVHLPIVAMTANAMEADRQRCFAAGMNDHVAKPIEPAALWAALGRWIRPR 1385
Query: 1002 P 1002
P
Sbjct: 1386 P 1386
>gi|350554177|ref|ZP_08923307.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349788353|gb|EGZ42356.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1595
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 198/647 (30%), Positives = 315/647 (48%), Gaps = 116/647 (17%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++++ ++L V+AE A+ AKS+FLA +SHEIRTPMNG++GM LLLD++L++ QR
Sbjct: 905 RLQETTEHAKQLAVQAERANAAKSEFLANMSHEIRTPMNGVIGMTGLLLDSELNAEQRRQ 964
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+T ++L++LIN++LD +KIEA KL+LEA+ FNL+ +L+D + + ++ KG+EL
Sbjct: 965 AETILNSAESLLSLINDILDFSKIEAGKLDLEALDFNLQYLLEDFAAALAGRAYEKGLEL 1024
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
++ P ++ GDPGR RQI+ NLVGN++KFT +G + + V L E +D L
Sbjct: 1025 FCVLAPDTPLYLRGDPGRVRQILNNLVGNAIKFTHQGEVGIHVSLVEHR------EDAVL 1078
Query: 540 LN-GGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
L T+ G+ G+ + KF Q + SI + GG
Sbjct: 1079 LRFAVTDTGI------------GIPPDKVSLLFQKFS--------QVDGSITR---TYGG 1115
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
TG+G+ +S Q MQ D
Sbjct: 1116 ------------TGLGLAISKQ---LAEMMQGD--------------------------- 1133
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S+ VGSTF FT G +E D + + E LP ++A+VVD+ P++ +
Sbjct: 1134 IGVESQEGVGSTFWFTLSLGVGQEPT--DARHAWGEPLP----AVRALVVDDHPIQCELL 1187
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI-SGEDSGFNAQL 777
L R G+ V + + DA L + +Q ++L ++ I GE G Q
Sbjct: 1188 CAILERRGVPVSSAGNSADALREIYAAL-AEHKPYQ--LLLTDQQMPIMDGETLG---QT 1241
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
L P + L ++IL ++ S ++ ++ A GF + KP+R + A LQ +L+
Sbjct: 1242 LQADPR--LADLYRVILPSSMSSAEDIERYHAAGF-HAYLPKPIRQQELFAVLQALLALP 1298
Query: 838 NKRQAGRGV--PNG--SSFHQGLL----RGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
R + P G ++ H ++ +IL+V+DN N+ VA G L+K G +
Sbjct: 1299 PDRLTHTPIISPRGPRAAIHAQVIPFAPNKVRILLVEDNSTNQQVALGILRKLGLKADAV 1358
Query: 890 ASAKAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ + A++ + P +D MD+QMP MDG +ATR IR ++ A +N
Sbjct: 1359 GNGQEAVETVINIP--YDLILMDVQMPVMDGLQATRAIRALDKAA----INTD------- 1405
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
+PI+AMTA + + CL GM+ Y+SKP + LA
Sbjct: 1406 ------IPIVAMTAHAMQGDKERCLAAGMNDYLSKPLVPHQVAETLA 1446
>gi|376004438|ref|ZP_09782141.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
gi|375327203|emb|CCE17894.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
Length = 1355
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 199/658 (30%), Positives = 306/658 (46%), Gaps = 132/658 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ + + A AA AKS+FLAT+SHEIRTPMN ++GM LLLDT LS Q+D+ +T +
Sbjct: 654 QELSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLVQQDFVETIRS 713
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
AL++LIN++LD +KIE+ KL+LEA F+LR L++ L L + K+ +K +EL F+
Sbjct: 714 SSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDA 773
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
P V+GD R RQI+ NL+ N+ VK A+ E L
Sbjct: 774 YTPNEVVGDMARVRQILVNLLSNA--------------------VKFTARGEVL------ 807
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
V S F+ L + A + S +
Sbjct: 808 --VSVSAKPLFSDLE-------------------------------LTAKSMYSTHYQIE 834
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS-- 663
V V DTGIGIP+ R+F F Q D+ST+R YGGTG+GL+IS+ L E+M G++ VS
Sbjct: 835 VAVSDTGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGD 894
Query: 664 ---------------RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
P GSTF F+ V + + Q D G + +++
Sbjct: 895 AIGGHPPENWQINKDTPTQGSTFYFSIVVQSSQNL----LPQWNHAD---ELAGKRLLII 947
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D P + + G++V+ + S +A + K G T DI +VE + I+
Sbjct: 948 DSHPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQGKTF-------DIAIVEME--IAN 998
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D GFN + + V LP ++L++ +++ + F + KP++ S +
Sbjct: 999 LD-GFNFATQVRQTSAGV-DLPLVMLIS--VAQQNFNPTDHRDFV-AFLNKPIKQSPLYN 1053
Query: 829 CLQQVLSTE---------NKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAA 876
L VL E N+ ++ + +P LL K +IL+ +D+ VN+ VA
Sbjct: 1054 ILINVLCGEPLQIKNWSRNQMRSPQDIP--------LLAEKLPLRILLAEDHLVNQKVAL 1105
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
L++ G + A + L+ L+ +D MD+QMP MDG EA R+I++
Sbjct: 1106 QILQRMGYRADVAGNGLEVLEALER-QPYDVILMDMQMPIMDGLEAARQIKK-------- 1156
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
D K I+A+TA+ + + EC+ GMD Y+SKP E L + L
Sbjct: 1157 ------RYDNQEKPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVL 1208
>gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
Length = 1611
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 191/664 (28%), Positives = 295/664 (44%), Gaps = 155/664 (23%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E + + +EL AE KS+FLA +SHEIRTP+N I+GM L L + L + Q Y
Sbjct: 862 RAEVELRRAKEL---AEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKSGLDARQSGY 918
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q G+ L+ +IN++LD +KIEA KL +E F L +L+ V + K+ KG+EL
Sbjct: 919 VVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVGFKAAAKGLEL 978
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+ V+ VP+ ++GD R QI+ N N+VKFTE+G ++HL R
Sbjct: 979 VLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQG----EIHLLVR------------ 1022
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
LE +G W +F+
Sbjct: 1023 ----------------------LERNEGARVWLRFE------------------------ 1036
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
V DTGIGI +R+F F QAD+ST+R YGGTG+GL+ISK L ELM G++
Sbjct: 1037 --------VRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEV 1088
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-----FKGLKAVVVDEKPVR 714
S GS F T + + E LP ++G + +VVD+
Sbjct: 1089 GVRSELGHGSAFWVT-------------VPLERGEPLPRALLRSDWRGCRVLVVDDNHTA 1135
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774
A V L +G+ S A ++ + E +
Sbjct: 1136 AQVLVDMLQTMGLQATQVHSGVQALQALRDAVA---------------------EQRPYG 1174
Query: 775 AQLLDWKPNGH-------------VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPL 821
LLDW G + +P+++++ + + D A++ G D V++KP+
Sbjct: 1175 LLLLDWHMPGMDGIELARRIRGLGLAHIPQMLMVTAHGRDEVMDAARSAGI-DNVLVKPV 1233
Query: 822 RASMIAACLQQVLSTENKRQAGRGVP---NGSSFHQGLLRGKKILVVDDNGVNRMVAAGA 878
AS++ L Q L+ QA P + S +LRG +L+V+DN +N++VA
Sbjct: 1234 SASVLFDTLMQPLA-----QAWDVHPLPRSASGAAPAVLRGAVVLLVEDNELNQIVAQEL 1288
Query: 879 LKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
L+ G V+ A++ + A+ + +D MD+QMP MDG ATR++R A
Sbjct: 1289 LRDAGMHVDVASNGQEAIACIDR-RRYDVVLMDMQMPVMDGETATRQLRADPRHAG---- 1343
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+AMTA+ + A + C GM+ +V KP + + L+ L ++
Sbjct: 1344 ----------------LPIIAMTANAMQADRERCFAAGMNDHVPKPIDPDVLWATLVRWL 1387
Query: 999 KSKP 1002
+P
Sbjct: 1388 SPRP 1391
>gi|409994119|ref|ZP_11277239.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
gi|409935032|gb|EKN76576.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1351
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 200/660 (30%), Positives = 309/660 (46%), Gaps = 132/660 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ E + A AA AKS+FLAT+SHEIRTPMN ++GM LLLDT LS Q+D+ +T +
Sbjct: 654 QELSEARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLVQQDFVETIRS 713
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
AL++LIN++LD +KIE+ KL+LEA F+LR L++ L L + K+ +K +EL F+
Sbjct: 714 SSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDA 773
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
P V+GD R RQI+ NL+ N+ VK A+ E L
Sbjct: 774 YTPNEVVGDMARVRQILVNLLSNA--------------------VKFTARGEVL------ 807
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
V S F+ L + A + S +
Sbjct: 808 --VSVSAKPLFSDLE-------------------------------LTAKSMYSTHYQIE 834
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS-- 663
V V DTGIGIP+ R+F F Q D+ST+R YGGTG+GL+IS+ L E+M G++ VS
Sbjct: 835 VAVSDTGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGD 894
Query: 664 ---------------RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
P GSTF F+ V + + Q D G + +++
Sbjct: 895 AIGGHPPENWQINKDTPTQGSTFYFSIVVQSSQNL----LPQWNHAD---ELAGKRLLII 947
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D P + + G++V+ + S +A + K G T DI +VE + I+
Sbjct: 948 DSHPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQGKTF-------DIAIVEME--IAN 998
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D GFN + + V LP ++L++ + + + F + KP++ S +
Sbjct: 999 LD-GFNFATQVRQTSAGV-DLPLVMLIS--VGQQNFNPTDHRDFV-AFLNKPIKQSPLYN 1053
Query: 829 CLQQVLSTE---------NKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAA 876
L VL E N+ ++ + +P LL K +IL+ +D+ VN+ VA
Sbjct: 1054 ILINVLCGEPLQIKNWSRNQMRSPQDIP--------LLAEKLPLRILLAEDHLVNQKVAL 1105
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
L++ G + A + L+ L+ +D MD+QMP MDG EA R+I++
Sbjct: 1106 QILQRMGYRADVAGNGLEVLEALER-QPYDVILMDMQMPIMDGLEAARQIKK-------- 1156
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
S+ + + R I+A+TA+ + + EC+ GMD Y+SKP E L + L+
Sbjct: 1157 --RYDSNDNPYSPRPR----IIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLSN 1210
>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
Length = 1782
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 190/651 (29%), Positives = 303/651 (46%), Gaps = 155/651 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL+++++ F L +L+D+ +FSEK+ +K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRY- 1151
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L+G+S++ G + + + +K + E LL
Sbjct: 1152 -------------LLGDSLRL---GQVLINLM---NNAIKFTERGEVLL----------- 1181
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+LS +E D +DV L V D+
Sbjct: 1182 ------SLSLVEQQD---------------------------------DDVVLRFSVRDS 1202
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G+I S+ GSTF
Sbjct: 1203 GIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTF 1262
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT K ++ + K ++L +G+ +VVD+ + + L +G V
Sbjct: 1263 YFT-----VKLHISDGQKLVLEQEL----EGMSVLVVDDNATARDIMRTTLESMGFRVDT 1313
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PN------- 783
S ++A S C + + L+DWK PN
Sbjct: 1314 VRSGEEAISR----------------------CLLQA----YEVALIDWKMPNMDGLETA 1347
Query: 784 ------------GHVFKLPKLILLATNISKD---ECDKAKAGGFADTVIMKPLRASMIAA 828
PK+++++ + ++ + ++ G+ I KP+ AS +
Sbjct: 1348 RQIQLQAQSQSQSQPQSQPKILMVSAHADREFLTQIEQLALAGY----ISKPISASRLLD 1403
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
+ + E R + L+GK+IL+V+DN +N VA+ L++ G +
Sbjct: 1404 GIMNAIGREGILPVRRRTEELAPQLLLPLQGKRILLVEDNEMNLEVASEFLEQVGIILSI 1463
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A + + ALDKL H FD MD QMP MDG++AT+ IR
Sbjct: 1464 ATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR--------------------- 1501
Query: 949 KRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
KR EL +LP++AMTA+ + D C++ GM+ +++KP E LY+ L K+
Sbjct: 1502 KRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYL 1552
>gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107]
gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107]
Length = 916
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 198/649 (30%), Positives = 308/649 (47%), Gaps = 119/649 (18%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
++VE+ + ++ AEAA AKSQFLA +SHEIRTP+NGILGM LLL+T+L+ Q+
Sbjct: 235 LRVEERTAQWRQATASAEAASQAKSQFLAVMSHEIRTPLNGILGMTNLLLETELTPKQKR 294
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
+A+ A+ G+ L+ +IN++LD +K+EA KLELE F L +++D+ ++ + KG+E
Sbjct: 295 FARVARRSGEDLLLIINDILDFSKVEAGKLELEIHPFQLNLLVEDLAERYAPIAHAKGLE 354
Query: 479 LAVFVSDKVPEF-VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
L + +P GD R Q++TNL+ N++KFTERG + ++V L R
Sbjct: 355 L--LCNTPLPPLSAEGDAARLAQVLTNLLSNAIKFTERGEVTLEVKLLLR---------- 402
Query: 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
E+ + G +T G+ ++ F Q+++S M G
Sbjct: 403 -------EDNLLHLHFGVRDTGIGIRVEQAERLFNAFT--------QADSS---MTRRYG 444
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G TG+G+ +S +CLVELM G
Sbjct: 445 G------------TGLGLAIS------------------------------QCLVELMGG 462
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
I+ S P GS F F E + +++ + GF L+ +VVD+ +
Sbjct: 463 HIALESEPGKGSYFYF--------ELRLPAVADTRNLQVMEGFSELRVLVVDDNQANREI 514
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQ 776
+Y L GI + SS +A L + P D++L D + G D G Q
Sbjct: 515 LEYWLKSWGISPLLVSSAPEAIG----ALHQQRLQGTPVDVLLT--DWMMPGMDGG---Q 565
Query: 777 LLD-WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
L+D + + H KL ++L + ++ + A+ ++KP+R S + L +++
Sbjct: 566 LIDAIRADTHFDKLAIVVLSSAGMAGNRLADARI-----PTLLKPVRQSELHNLLLALVT 620
Query: 836 -TENKRQAGRGV--PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
E+ RQ V N S G L G K+L+ +DN VN+ VA+ L+ G A +
Sbjct: 621 GDESARQVRNLVQAANTSQASPGKLDG-KVLLAEDNPVNQEVASAMLQTLGINARLAHNG 679
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A +LQ FD MD QMP MDGFEAT R R+ E EQ +
Sbjct: 680 QEAFTRLQE-ESFDLVLMDCQMPIMDGFEATARWRRYE---QEQGLTP------------ 723
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LP++A+TA+ I + CL+ GM Y+SKPF E LY LA++ ++
Sbjct: 724 --LPVIALTANAIVGDRERCLERGMSDYLSKPFSTEQLYDVLARWLPTR 770
>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|423065813|ref|ZP_17054603.1| putative two-component hybrid sensor and regulator [Arthrospira
platensis C1]
gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|406712571|gb|EKD07755.1| putative two-component hybrid sensor and regulator [Arthrospira
platensis C1]
Length = 1355
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 199/658 (30%), Positives = 305/658 (46%), Gaps = 132/658 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ + + A AA AKS+FLAT+SHEIRTPMN ++GM LLLDT LS Q+D+ +T +
Sbjct: 654 QELSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLVQQDFVETIRS 713
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
AL++LIN++LD +KIE+ KL+LEA F+LR L++ L L + K+ +K +EL F+
Sbjct: 714 SSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDA 773
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
P V+GD R RQI+ NL+ N+ VK A+ E L
Sbjct: 774 YTPNEVVGDMARVRQILVNLLSNA--------------------VKFTARGEVL------ 807
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
V S F+ L + A + S +
Sbjct: 808 --VSVSAKPLFSDLE-------------------------------LTAKSMYSTHYQIE 834
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS-- 663
V V DTGIGIP+ R+F F Q D+ST+R YGGTG+GL+IS+ L E+M G++ VS
Sbjct: 835 VAVSDTGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGD 894
Query: 664 ---------------RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
P GSTF F+ V + + Q D G + +++
Sbjct: 895 AIGGHPPENWQINKDTPTQGSTFYFSIVVQSSQNL----LPQWNHAD---ELAGKRLLII 947
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D P + + G++V+ + S +A + K G T DI +VE + I+
Sbjct: 948 DSHPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQGKTF-------DIAIVEME--IAN 998
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D GFN + + V LP ++L++ + + + F + KP++ S +
Sbjct: 999 LD-GFNFATQVRQTSAGV-DLPLVMLIS--VGQQNFNPTDHRDFV-AFLNKPIKQSPLYN 1053
Query: 829 CLQQVLSTE---------NKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAA 876
L VL E N+ ++ + +P LL K +IL+ +D+ VN+ VA
Sbjct: 1054 ILINVLCGEPLQIKNWSRNQMRSPQDIP--------LLAEKLPLRILLAEDHLVNQKVAL 1105
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
L++ G + A + L+ L+ +D MD+QMP MDG EA R+I++
Sbjct: 1106 QILQRMGYRADVAGNGLEVLEALER-QPYDVILMDMQMPIMDGLEAARQIKK-------- 1156
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
D K I+A+TA+ + + EC+ GMD Y+SKP E L + L
Sbjct: 1157 ------RYDNQEKPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVL 1208
>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1524
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 201/648 (31%), Positives = 293/648 (45%), Gaps = 134/648 (20%)
Query: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
+E RAE A VAKS+FLA +SHEIRTPMNG++GM LLL+TDL QR +A+ + G+
Sbjct: 847 REQAARAEMASVAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLDDEQRHFAEVVRASGE 906
Query: 429 ALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVP 488
+L+ LIN++LD +KIEA KL+LE + F+L L+D + + +++ KG+E +VP
Sbjct: 907 SLLRLINDILDFSKIEAGKLDLEMLDFDLSLSLEDFATALALRAQEKGLEFLCDADPEVP 966
Query: 489 EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH-LAERTMVKTDAKDETLLNGGTEEG 547
F+ GDPGR RQI+TNL GN++KFT G + ++V L ERT ++ LL +
Sbjct: 967 AFLRGDPGRLRQILTNLAGNAIKFTPSGEVAIRVSVLEERT-------EDVLLRFAVRD- 1018
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+G G GL +DKF Q +AS GG
Sbjct: 1019 ---TGIGIPEDKLGL-------LFDKFS--------QVDASTTRQY---GG--------- 1048
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
TG+G+ +S Q L LM G++ +S+
Sbjct: 1049 ---TGLGLAISKQ------------------------------LAALMDGEVGVISQAGK 1075
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F FTA K E + LP G++ ++VD+ + L G+
Sbjct: 1076 GSEFWFTARLAKQPESAHRQLS------LPADLLGVRVLIVDDNATNREILMTRLTSWGM 1129
Query: 728 MVKMSSSIKDASSTAKN--GLTSSEDKFQPDII---LVEKDCWISGEDSGFNAQLLDWKP 782
+ +D + G D F+ +I + E D G G +++L D
Sbjct: 1130 ---RPAEARDGPEALRRLAGALDEPDPFRVAVIDMQMPEMDGETLGRAIGADSRLAD--- 1183
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN---- 838
++++L + + + + + GFA I KP+R + A L VL+ +
Sbjct: 1184 -------TRMVMLTSLGMRGDARRFQELGFA-AYITKPIRHEELKAVLSLVLTARSPAEM 1235
Query: 839 ------KRQAGRGVPNGSSFHQGLLRGKK--ILVVDDNGVNRMVAAGALKKFGATVECAA 890
R R + N L G K IL+ +DN N+ VA G LKK G + A
Sbjct: 1236 VSRPIATRYLAREILN-------LFAGCKVRILLAEDNTTNQQVALGILKKMGLHADAVA 1288
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ A+ L S +D MD+QMP MDG EATR IR S N G
Sbjct: 1289 NGAEAVTALAS-IPYDLVLMDVQMPVMDGLEATRAIRASSSAVR----NPG--------- 1334
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+AMTA + ++CL GM+ YVSKP L LA++
Sbjct: 1335 ----LPIIAMTAGAMRGDQEQCLDAGMNDYVSKPVSPAILAEVLARWL 1378
>gi|297601588|ref|NP_001051083.2| Os03g0717700 [Oryza sativa Japonica Group]
gi|255674844|dbj|BAF12997.2| Os03g0717700 [Oryza sativa Japonica Group]
Length = 250
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 159/249 (63%), Gaps = 12/249 (4%)
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
++L+E D W D +A+L + K + + LPK+ LL S E DK K D+V
Sbjct: 1 MLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFLL----SAAESDKVKKIHAVDSV 56
Query: 817 IMKPLRASMIAACLQQVL-----STENKRQAG--RGVPNGSSFHQGLLRGKKILVVDDNG 869
I KPL+AS +AACL Q L S E + +G G S H GLL GK ILVVDDN
Sbjct: 57 IPKPLKASALAACLFQALGITQPSHEKRDDSGSLHGRDGSGSLH-GLLLGKNILVVDDNK 115
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
VN VAAG LKK+GA VEC S K AL LQ PH FD C MDIQMPEMDGFEATR+IR M
Sbjct: 116 VNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQIRAM 175
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
E KANEQ + S + AK + HLPILAMTADVI AT +EC KCGMDGYVSKPFEE+
Sbjct: 176 EGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQ 235
Query: 990 LYRELAKFF 998
L++ + KF
Sbjct: 236 LFQAVQKFL 244
>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1245
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 197/629 (31%), Positives = 289/629 (45%), Gaps = 110/629 (17%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A+AAD AKS+FLA +SHEIRTPMN ++GM+ L L T++S QRDY + A +L+ +I
Sbjct: 584 AQAADQAKSEFLANMSHEIRTPMNAVIGMIHLTLKTEMSPKQRDYLRKAGFAADSLLGII 643
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
+++LD +K+EA KLELE F L +LD V S+ K+ KG+E F+ PE
Sbjct: 644 DDILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLE---FLLKIAPE----- 695
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
+ L+G+ ++ G I + L N + TG
Sbjct: 696 ------VPAQLIGDPLRL---GQILI-----------------NLCNNAVK------FTG 723
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
Q +E D R + V L V D GIG
Sbjct: 724 QGEIFVFIEQLDCREN-----------------------------NRVMLRFSVRDNGIG 754
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +++F PF QAD+S++R +GGTG+GL+ISK LV LM G+I S P GS F FT
Sbjct: 755 MTPEQLDKLFTPFTQADASSTRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKGSVFFFT 814
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
A FG + + K LP + +K +V+D+ + + LG ++++S
Sbjct: 815 ACFGIGSSPILQGPK------LPSALQRMKLLVLDDSARSRDIFEGLFYSLGCRAELAAS 868
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
A+ GL E +P +L+ D + Q+ P H PK+I+
Sbjct: 869 -------AQEGLGCLERSEKPYDLLLLDDSLSGLDGFAVARQVRRMSPLHHQ---PKIIM 918
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLR-ASMIAACLQQVLSTENKRQAGRGVPN--GSS 851
+ T +E K D + +P+ S+ A + S AG V G
Sbjct: 919 I-TGYGDEEAHKQVVEEGLDGCLTRPVTLRSLFDAVVAAFESDSRTEPAGSPVNETAGDK 977
Query: 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
G LRG ++L+V+DN +N+ VA L G V A + A++ L + H FD MD
Sbjct: 978 RRYGQLRGMRVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVE-LAAQHRFDTVLMD 1036
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
IQMP MDG+EA+R IR + A RD LPI+AMTA +
Sbjct: 1037 IQMPVMDGYEASRLIRADQ-----------------ACRD---LPIIAMTAHAMPQDRQR 1076
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
CL+ GM+ YVSKP + LY L ++ ++
Sbjct: 1077 CLESGMNDYVSKPINPQELYSTLERWGRA 1105
>gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
Length = 1831
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 201/676 (29%), Positives = 309/676 (45%), Gaps = 143/676 (21%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
L G I I +++ +++ A+ A AKS FLA +SHEIRTPMN I+GM L+ T
Sbjct: 979 LVGNIIDITTEKENARQLEIAVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQT 1038
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
DL+ Q DY Q ++L+ +IN++LD +KIEA KLELE FNL D+++ + +
Sbjct: 1039 DLNRKQSDYVTKIQNSAESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAH 1098
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
K++ KG+EL + + +P +L+G+ ++ G I + +LA M
Sbjct: 1099 KTQQKGLELLIDIEPNLP--------------VDLIGDPLRL---GQILI--NLANNAMK 1139
Query: 531 KTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASII 590
TD EG II
Sbjct: 1140 FTD------------EGEI---------------------------------------II 1148
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
A + VT+ V+DTGIG+ ++F F QAD+ST+R YGGTG+GL+ISK
Sbjct: 1149 KARAVEQHEQQVTIEFAVKDTGIGMTPEQLNKLFKSFSQADASTTRKYGGTGLGLTISKT 1208
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
L ELM G+I S GSTF FTA F V I+++ S+ L GL ++VD+
Sbjct: 1209 LTELMAGKIWVESSYGEGSTFLFTAKFAIAA--VNSAIEKASSKSL----LGLPLLIVDD 1262
Query: 711 KPVRAAVTQYHLNR-LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
V A + L++ LG +++S +A +EK +
Sbjct: 1263 S-VAAREILFTLSKSLGFRPDLAASGSEA---------------------IEKVKLAHSQ 1300
Query: 770 DSGFNAQLLDWK-PNGHVFKL-------------PKLILLATNISKDECDKAKAGGFADT 815
+ + L DWK P L PKL+++ T +DE K D+
Sbjct: 1301 GNPYKLLLADWKMPQMDGLALCGAIQGDLSLVNQPKLVIV-TAYDRDEMLKQAGTAELDS 1359
Query: 816 VIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLR---GKKILVVDDNGVNR 872
I KP+ AS + L V++ K+ + V + + G +L+V+DN +N+
Sbjct: 1360 AITKPVSASTL---LDTVMAVMGKKSSQPKVTESGKLNISAAKDIVGAHVLLVEDNDINQ 1416
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
+A L G V A + + A+D + + +DA MDIQMP MDG+EATR IR
Sbjct: 1417 EIATELLNMAGIEVSTACNGQEAVD-MAIANSYDAILMDIQMPIMDGYEATRNIR----- 1470
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
D+ +PI+AMTA+ + ++C++ GM+ ++ KP + +Y+
Sbjct: 1471 ---------------LNPDKQLIPIIAMTANAMSGDREKCIEAGMNEHIPKPINPQEVYQ 1515
Query: 993 ELAKFFK--SKPLSGA 1006
LAK+ + K LS A
Sbjct: 1516 TLAKWIEPTGKTLSQA 1531
>gi|428224952|ref|YP_007109049.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427984853|gb|AFY65997.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1042
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 195/621 (31%), Positives = 290/621 (46%), Gaps = 102/621 (16%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
A+SQF A +SHEIRTPMN ++G+ LLL+T+LS QR + + + G AL+ L+NE+LD
Sbjct: 391 ARSQFFAAMSHEIRTPMNAVIGLTGLLLETELSPQQRQFVEIIRGSGNALLDLVNEILDF 450
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+K+EA KLELE F LR ++ L L ++++ KG+ELA ++ +VP + GD GR RQ
Sbjct: 451 SKLEAGKLELELQPFELRLGIEAALDLLAQQAEEKGLELAYILAGEVPSVIYGDAGRLRQ 510
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
I+ NLVGN +KFT +G + V V G SG + + S
Sbjct: 511 ILVNLVGNGLKFTHQGEVVVSV-------------------GANRLLFAPSGAQRRSPPS 551
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
A D W + + V DTGIGIP
Sbjct: 552 WAAATD---PWYELQ------------------------------FSVRDTGIGIPPERM 578
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
R+F F QAD S SR YGGTG+GL IS+ L ELM G++ S+ GSTF FT V
Sbjct: 579 NRLFHAFSQADVSVSRQYGGTGLGLVISRSLSELMGGRMWVESQVNQGSTFFFTLVVQAP 638
Query: 681 KEYVFED--IKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDA 738
+ ED + Q + L +VVD+ PV + G+ V S ++A
Sbjct: 639 ADAPLEDDNLLQLRDRHL---------LVVDDNPVHRRLLVLQGESWGMAVTALGSPEEA 689
Query: 739 SSTAKNGLTSSEDKFQPDIILVEKDCWISG-EDSGFNAQLLDWKPNGHVFKLPKLILLAT 797
+ K G D+++V C S D+ A+L G LP ++L T
Sbjct: 690 IAWVKGGNLC-------DLLVV--SCQQSAMSDATLMAKLRSLVDPG----LPGVLLRPT 736
Query: 798 -NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ-G 855
+ D A + G +V+MKP++ S + L +L + R+ V + S+ Q G
Sbjct: 737 EQVLGGVPDSAYSEGI--SVLMKPVKQSHLYDALVGLLMHDRTRRRPSQVFSLSADRQMG 794
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
+IL+ DDN +N+ VA L++ G + +A L+ L+ +D +D+QMP
Sbjct: 795 QHHPLRILLADDNRLNQKVATQLLRRLGYEADVVDHGRAVLEALEQ-QVYDVVLLDMQMP 853
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
E+DGF T+ + + ++ +AMTA+ + + CL
Sbjct: 854 ELDGFAVTQAVLKRWPHGRPRL--------------------IAMTANALVQDREACLAA 893
Query: 976 GMDGYVSKPFEEENLYRELAK 996
G+D YVSKP + L L +
Sbjct: 894 GLDDYVSKPLQISALVAALNR 914
>gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 876
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 200/649 (30%), Positives = 305/649 (46%), Gaps = 121/649 (18%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ + AE A +AKS+FLA +SHEIRTPMNG+LGML LLLDT L++ QRDYA+TA+
Sbjct: 200 RLRRAVLSAEEASLAKSEFLANMSHEIRTPMNGVLGMLGLLLDTRLAAEQRDYAETARAS 259
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L+ +IN++LD +K+EA ++ E V F+LR+ ++DV + + K +EL V +
Sbjct: 260 AMTLLDIINDILDLSKVEAGQMAFEPVAFDLRSAIEDVFDQLAVLAAPKALELIVRYDPE 319
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
P ++GD GR RQ++ NLVGN++KFT+RGH+ ++ A E L +G +
Sbjct: 320 TPSRIVGDAGRIRQVLVNLVGNAIKFTQRGHVQLR------------ATSEELDDGSVDL 367
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ TG G+ ++ +DKF+ L
Sbjct: 368 KLSVEDTG-----PGISESEREQIFDKFRQL----------------------------- 393
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
D S++R +GGTG+GL+I + LV M G+I SR
Sbjct: 394 ------------------------DVSSTRVHGGTGLGLAICRALVHGMGGEIGLESRRG 429
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTF F+ + E V + +P + + +VVD+ P++ L
Sbjct: 430 EGSTFWFSIPVERASEDVSTITYTTGPSYMP--LRNMHVLVVDDHPLQCEALLEELRAAD 487
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP--NG 784
+SS + A + F DI+L+++D + D+ A + P +G
Sbjct: 488 THADAASSGRSAMIALRRAAAGDGKPF--DIVLIDED--MPEMDALTLAHHIRADPTISG 543
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS---TENKRQ 841
V L+ L+T + + GF + KP+ S + L V +
Sbjct: 544 TV-----LVFLSTVQRRRGLTELADSGF-QGYLRKPVHRSHLLDVLATVWERHLAPDSTS 597
Query: 842 AGRGV-----------PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
A RG+ P+G+ + L+ ++LVV+DN VN+ VA L G V+ A
Sbjct: 598 APRGIVTRHSVRSDHTPSGN--WRPLIASARVLVVEDNVVNQKVARRMLSHLGCRVDVAG 655
Query: 891 SAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ + AL + Q P +D FMD+QMPEMDGF AT +R DG K
Sbjct: 656 NGREALQLIDQVP--YDLVFMDVQMPEMDGFAATAAVR------------ARPPTDG--K 699
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
R LPI+AMTA + + CL GMDGYVSKP +E+L L ++
Sbjct: 700 R----LPIIAMTARAMSGDRERCLAAGMDGYVSKPIVQEHLGEILLQYL 744
>gi|350551958|ref|ZP_08921167.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349795601|gb|EGZ49397.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1343
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 195/646 (30%), Positives = 299/646 (46%), Gaps = 106/646 (16%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E + EL +AE A++AKS FLA +SHEIRTPMNG++GM LLLDT+L++ QR Y
Sbjct: 638 QLETAIARANELASKAEQANIAKSHFLANMSHEIRTPMNGVIGMTGLLLDTELNTEQRRY 697
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+ AL+ LIN++LD +KIEA +L+LE + FNL +L+D + + ++ KG+EL
Sbjct: 698 AEIVHTSADALLTLINDILDFSKIEAHRLDLEMLDFNLLELLEDFAATLAVRAHEKGLEL 757
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
F VP V GDPGR RQI+TNLV N++KFT++G + V+V L +T A++ TL
Sbjct: 758 LCFADPNVPTQVRGDPGRLRQILTNLVSNAIKFTQQGEVVVRVFLMAQT-----AQECTL 812
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
+ G+ G+ ++KF Q +AS GG
Sbjct: 813 HFSVRDTGI------------GIPEEKQDILFEKFT--------QVDASTTR---RYGG- 848
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TG+G+ +S Q M G IGL
Sbjct: 849 -----------TGLGLAISKQLAELM--------------GGEIGLH------------- 870
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+ + GSTF FT GK ++ E Q P G++ +VVD+ +
Sbjct: 871 ---SQEENGSTFWFTVCLGKQEQGQAEIQAQGN-----PDLHGVRILVVDDNATNREILI 922
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
LN G+ V + A K ++ +D F+ II D + D L+
Sbjct: 923 TRLNLWGMRVSDYADALSALEALKQAVSVHKDPFKLAII----DMQMPEMDGETLGTLI- 977
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS---- 835
K + + L K I+L + + + + + GF+ I KPLR + L +++
Sbjct: 978 -KSDASLQSL-KTIMLTSLGMRGDAKRFEQAGFS-AYITKPLRHLELFNVLSDLMAEGPQ 1034
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
T+++R R P H ++ +IL+ +DN N+ VA LK+ G + A
Sbjct: 1035 TQSRRILTRERPAQMPQHHFNVQA-RILLAEDNITNQKVALSILKRLGLKADTVADGAEV 1093
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L L++ +D MD+QMP MDG ATR IR ++ + N +
Sbjct: 1094 LVALKTI-PYDLVLMDVQMPVMDGLAATRAIRDPQTP----VFNHA-------------I 1135
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
PI+AMTA + + CL+ GM+ YV KP L L ++ ++
Sbjct: 1136 PIIAMTAHAMQGDRERCLQAGMNDYVPKPVSATILAEALKRWLPAQ 1181
>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
271]
gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
271]
Length = 1040
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 208/649 (32%), Positives = 305/649 (46%), Gaps = 122/649 (18%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K+E+ K ++L +A+ A AKS+FLA +SHEIRTPMNG++GM LLL+TDL+ Q Y
Sbjct: 494 KLENASRKAKKLAEQAQEASKAKSEFLANISHEIRTPMNGVIGMTGLLLETDLTPQQHRY 553
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A T ++L+ LIN++LD +KIEA KL LE + F+L+ ++DD + F+ ++ K +E
Sbjct: 554 AGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQELMDDFAASFAIQAEQKNLEF 613
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+ +P + GDPGR RQI+ N+ GN+VKFT +G I + V L +D D+ +
Sbjct: 614 LCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFTSKGEIAIYVTL------DSDCDDQVV 667
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
L C TG G+ ++KF IDA + GG
Sbjct: 668 LR------FCIRDTG-----IGIAKEKIDTLFEKFTQ-IDASATR----------QYGG- 704
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TG+G+ SI+K LVELM+G I
Sbjct: 705 -----------TGLGL------------------------------SIAKDLVELMQGSI 723
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GS F FTA + + ++SK+ L G KA++VD+ +
Sbjct: 724 GVESTVNQGSLFWFTAKLNRQTHATLQ-AQESKNRSL----FGQKALIVDDNATNREILS 778
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII---LVEKDCWISGEDSGFNAQ 776
L G+ + S + +DA TS+ D F +I + E D + G+ +
Sbjct: 779 KRLLSWGMRPEESDNGQDALDMLIRASTST-DAFTIAVIDMQMPEMDGVMLGKAIREHEA 837
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFA----DTVIMKPLRASMIAACLQQ 832
L+ ++I++ + + E A+ GF+ V +K L+ ++IA Q
Sbjct: 838 LMSL----------QMIMMTSLGNNGESSLAEKAGFSAWLQKPVQIKKLKNALIALSATQ 887
Query: 833 VLSTENKRQAGRGVPNG--SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
E Q + PN + F + R IL+V+DN VN+ VA LKKFG V+ A
Sbjct: 888 --EPEADEQPSQKKPNNLLNRFAECKAR---ILLVEDNIVNQQVAMLMLKKFGLHVDGVA 942
Query: 891 SAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ K AL L S P +D MDIQMP MDG EATRRIR E G+S
Sbjct: 943 NGKEALSALMSLP--YDVVLMDIQMPVMDGLEATRRIRNGEC---------GTSA----- 986
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA + + CL GM+ YVSKP ++ L L K+
Sbjct: 987 -----IPIIAMTAHAKQSDRELCLATGMNDYVSKPVNQQALADTLEKWL 1030
>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B]
gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B]
gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B]
Length = 949
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 188/660 (28%), Positives = 314/660 (47%), Gaps = 110/660 (16%)
Query: 347 VGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
+ YI+ A+ I K ++ + K AEAA++AKS+FLA +S EIRTPMNGI G L L
Sbjct: 293 IKYII-CTAVDITKQRSAEAQLYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLEL 351
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
L T+LSS Q+++ + A+ + L+ +IN++LD +KIEARKL +E + FNLR ++D +S
Sbjct: 352 LELTNLSSEQKEFIREAKSASEVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDTVS 411
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
L + K+ KG+EL V + + VPE V+GDP R RQI+ NL+ N+VKFTE+G++ + + E
Sbjct: 412 LLAPKAAEKGLELYVRIKEDVPEEVIGDPSRLRQILNNLIYNAVKFTEKGYVSISMDYLE 471
Query: 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSN 586
+ + L+N E+ T G+ D ++ F Q++
Sbjct: 472 KD------HEIALVNFEVED-----------TGIGIATEDIPKVFEAFN--------QAD 506
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
AS GG TG+G+P+S +
Sbjct: 507 ASTTRKY---GG------------TGLGLPISYE-------------------------- 525
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV 706
L+++M G I S+ GSTF F K + S+ L KG +
Sbjct: 526 ----LIKMMGGDIRVESKLGEGSTFKFNVNLKIAK-------RASEQRCLFDKLKGKNII 574
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
+VD + + + G+ + K+A + ++++ + + DI +++ +
Sbjct: 575 IVDGNENNINIIKSNFQGTGVNI---FEAKNAGNAINIIISNANTENRIDIAIID---YQ 628
Query: 767 SGEDSGFN-AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
+ +G+ A + P K KLILL K E + A+ GF + + KP+R
Sbjct: 629 MSDMTGYELATTIKTIPFA---KEIKLILLINLSQKGESNVAQENGFLSS-LFKPIRRKD 684
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLR-GKKILVVDDNGVNRMVAAGALKKFGA 884
+ C+ ++ + + + R + + + R KIL+V+DN +NR + +K
Sbjct: 685 LLNCISKIFGLQKEDEENRKIEIKDAISETKNRLIPKILLVEDNEINRKIFISMIKSRNF 744
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
T + A AL ++ +D FMD QMP MDG+E+T +IR++E
Sbjct: 745 TCDVAVDGSEALKAVEKKD-YDIIFMDCQMPTMDGYESTAKIRKLE-------------- 789
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
G K H I+AMTA+ + ++C++ GMD Y+SKP +++ + + K + S
Sbjct: 790 -GNKK----HTRIVAMTANAMEGDSEKCIEAGMDDYISKPINFNKMFKIIEESIKEQEFS 844
>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
Length = 1248
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 188/624 (30%), Positives = 285/624 (45%), Gaps = 117/624 (18%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLA +SHEIRTPMNGI+GM LLLDT+LS QRD+ QT AL+ +IN++LD +
Sbjct: 600 KSEFLANMSHEIRTPMNGIIGMTGLLLDTELSPKQRDFTQTISSSADALLTIINDILDFS 659
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA L E + F L +++ + L + ++ ++ IELA V VP + GDPGR RQ+
Sbjct: 660 KIEAGMLAFEEIDFQLGTVVEGSVELLAARAASREIELASLVYHDVPTNLRGDPGRLRQV 719
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+TNL+GN+VKFT++G + V+ + E T T+ T+ G+ S Q
Sbjct: 720 LTNLIGNAVKFTDKGEVVVRANCQENAETHT-----TIRFSVTDTGIGISSEAQERLFQP 774
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
ADG + +F GG TG+G+ + Q
Sbjct: 775 FVQADGSTT-RRF----------------------GG------------TGLGLAICKQ- 798
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
LV M G+I S GSTF FTA F K
Sbjct: 799 -----------------------------LVARMGGEIGVTSEAGKGSTFWFTARFEK-- 827
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS- 740
+ P K ++ + VD+ A+ + L+ G+ + ++S K A S
Sbjct: 828 -----QAGGGMAAPRPAKLKDVRVITVDDNDTNRAILHHLLSNWGMREQQAASGKQALSI 882
Query: 741 -TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQLLDWKPNGHVFKLPKLILLATN 798
A+ G D D+ + E D G A+ + P F ++++L T+
Sbjct: 883 LQAEAGRGRMFDLAILDMQMPEMD--------GLELARAMKKDPR---FASARIVML-TS 930
Query: 799 ISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-NKRQAGRGV----PNGSSFH 853
+ + E +A D + KP++ S + CL V+S + R+ G+ +S
Sbjct: 931 VDRQEDPEALRETGVDAYLTKPVKQSQLYDCLSLVMSQDVETREIKSGLVALSEQPASLP 990
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
+ +IL+ +DN VN+ VA L+K G + + + ALD L +D FMD Q
Sbjct: 991 SEPIEKLRILIAEDNPVNQKVALYQLQKLGYMADVVENGRRALDALARSR-YDIVFMDCQ 1049
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPE+DG+EATR +R +E D H ++AMTA+ + ++CL
Sbjct: 1050 MPELDGYEATRDLRAIEG-------------------DVRHTWVIAMTANSLEGDREKCL 1090
Query: 974 KCGMDGYVSKPFEEENLYRELAKF 997
GMD YVSKP + E L+ + +F
Sbjct: 1091 NAGMDDYVSKPVKPEVLHAAIRRF 1114
>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 1442
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 192/638 (30%), Positives = 297/638 (46%), Gaps = 118/638 (18%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
K+ + K AE+A+ AKS FLA +SHEIRTPMNGILG L LL +T+LS+ Q+DY Q A
Sbjct: 803 QKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETELSTEQQDYVQEAHR 862
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
+ L+ LIN++LD +KIEA KL +E +
Sbjct: 863 ASEILLYLINDILDFSKIEAGKLAMEEI-------------------------------- 890
Query: 486 KVPEFVLGDPGRFRQIITNLVG-NSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
P R R ++ + V + K E+G L T++K++ DE + +
Sbjct: 891 ---------PFRVRTVVEDAVSLQAPKAREKG-------LEMHTLIKSNVPDEVVGDPAR 934
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS-NGGSEDVT 603
+ N L L +A F I+ ++ + N S+
Sbjct: 935 LRQI-------LNNL-----------------LSNAVKFTHTGEILVIVETINESSDKAE 970
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
+ V D+GIGI E++F PF QAD+ST+R YGGTG+GL+IS LV LM G + S
Sbjct: 971 IAFEVSDSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKS 1030
Query: 664 RPQVGSTFSFTAVF--GKCKEYV-FEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
+ GS F FTA F G K+ + FE P KG + ++VD+ + +
Sbjct: 1031 KLGQGSKFYFTACFKPGLRKDTLPFE----------PAELKGARVLIVDDNSSNRKIIRT 1080
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
+L +V+ S D++ A L S+ D+++V D + + A L
Sbjct: 1081 YLEDAQCLVEES----DSAEKAITILLSASAVKSFDVVIV--DFQMPAMNGHELAAALKA 1134
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
P+ LI+L + K + +AK GF+ + KP++ + C+ VL + +
Sbjct: 1135 IPSTRAI---HLIMLTSAAQKGDARRAKEHGFS-GYLTKPVKRDELLQCISIVLGLKTEA 1190
Query: 841 QAGRGVPNGSSFHQGLLRGK-KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
G + + + + + + L+V+DN +N+ + L+K G + A S AL L
Sbjct: 1191 SLGDSIVTRYTIKENPIPARPRFLLVEDNEMNQKIIVKMLEKRGMYCDLACSGAEALKAL 1250
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q +D FMD QMPEMDG+E T RIRQME +E H I+A
Sbjct: 1251 QQKD-YDIVFMDCQMPEMDGYETTARIRQMEG-------------------EERHTIIVA 1290
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
MTA+ + ++CL+ GMD Y+SKP + + L+ + ++
Sbjct: 1291 MTANAMEGDREKCLQAGMDDYISKPVDFQLLFNIIEQY 1328
>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 816
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 190/622 (30%), Positives = 288/622 (46%), Gaps = 108/622 (17%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AE A+VAK +FLA +SHEIRTPMNG++GM LL T+LS QR+Y L+
Sbjct: 135 KAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTELSVQQREYVSIILHSADTLM 194
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LIN+VLD +KIEA KLELE++ F LR L D L + ++ +KG+ELA V ++P+ +
Sbjct: 195 RLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLELAYHVPVEIPDAL 254
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R RQIITNLVGN++KFTE+G + V V L E T TD + E + + G+ S
Sbjct: 255 VGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETT--DTDVQLEFEVR---DTGIGIS 309
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
Q + AD + GG T
Sbjct: 310 KNQQEKVFTAFGQADASTT-----------------------RRYGG------------T 334
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++AQ L E M G+I S P VGSTF
Sbjct: 335 GLGLTIAAQ------------------------------LAEKMGGKIKLESEPGVGSTF 364
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
SF + +E ++ S++L +G ++VD+ +TQ L G++ +
Sbjct: 365 SFAPILHLAREE--RKVRTLSSDEL----RGQPVLLVDDNETNRRITQEILVNWGMVPTL 418
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPK 791
+S+ +A + + + P + L+ D ++ D GF +L +
Sbjct: 419 ASNGAEALAALDRAIA---EGVPPRLALL--DVFMPEMD-GF--ELARRIRTRQELAQTR 470
Query: 792 LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
+++L++ D + G + ++MKP++ S + + + L +P S
Sbjct: 471 ILMLSSAERTDGEARMHELGIS-RLLMKPIKQSDLLNAVTEALGVGLPEPH---IPIPSP 526
Query: 852 FHQ-GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
F + G + + +L+ +D VN+ V L K G VE + + A++ +Q FD M
Sbjct: 527 FTRPGEIPIRHVLLAEDGVVNQQVTVALLTKRGHPVEVVENGEEAVEAVQRGD-FDVVLM 585
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
D+ MP MDG A R IR+ E GG H+PI+A+TA A +
Sbjct: 586 DVHMPVMDGLAAARMIRERERN------TGG------------HIPIIALTASATKADRE 627
Query: 971 ECLKCGMDGYVSKPFEEENLYR 992
C+ GMD YV+KPF LYR
Sbjct: 628 RCMAAGMDDYVTKPFRAAELYR 649
>gi|375132835|ref|YP_005049243.1| signal transduction histidine kinase-like protein [Vibrio furnissii
NCTC 11218]
gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii
NCTC 11218]
Length = 1268
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 203/657 (30%), Positives = 303/657 (46%), Gaps = 145/657 (22%)
Query: 347 VGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
VGY+ G A + + ++ E K AE A+ AKS FLA +SHE+RTPMN ILG+L +
Sbjct: 500 VGYL--GIAYDLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQI 557
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
+TDL+ QRDY Q ++L+ L+N++LD +K+EA K+E+E F+L ++ +
Sbjct: 558 AQNTDLNKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGI 617
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
L S ++K +E+ + + VP T L+G+S++ + + ++LA
Sbjct: 618 LLSSNLQHKHLEIIYQIDEDVP--------------TYLIGDSLRLRQ-----ILLNLAG 658
Query: 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSN 586
+ T+A G+ E+ DG
Sbjct: 659 NAIKFTEA-------------------GEVKVSIQTESHDG------------------- 680
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
+ L + V DTGIG+ Q VF F QA+SS SR YGGTG+GLS
Sbjct: 681 -------------DRCVLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLS 727
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV 706
I K LV LM G + S+ VGS FSFT G C V E+ + S +LP GL+ +
Sbjct: 728 IVKHLVGLMEGSVQVKSKQGVGSEFSFTVNLG-C---VDEERQPEPSAELP---DGLQVL 780
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
+V++ + L RLG V +++ DA A + + ++ QP
Sbjct: 781 IVEDNNTARLIFDDLLQRLGCHV---TAVADAEH-ALDTIEQADANGQP----------- 825
Query: 767 SGEDSGFNAQLLDWKPNG-----------HVFKLPK--LILLATNISKDECDK--AKAGG 811
F+ +DWK G H L K L+++AT ++ D+ +
Sbjct: 826 ------FDLLFIDWKLPGMDGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEETQS 879
Query: 812 FADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN 871
D +++KP+ M+ L V+ N R R G L G K+L+V+DN N
Sbjct: 880 LLDALLVKPVTPDMVKNTLLDVV---NNRNQPRDEQLGYRAQSQALLGLKLLLVEDNPTN 936
Query: 872 RMVAAGALKKFGATV---ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ 928
R+VA L + GAT+ E A AALD+ + F MD+QMP+MDG+E TRRIRQ
Sbjct: 937 RLVATELLSQQGATIVEAESGVEALAALDQQE----FSLVLMDVQMPDMDGYETTRRIRQ 992
Query: 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
M A+ LPILAMTA+ + CL GM+ +++KPF
Sbjct: 993 MAHFAD--------------------LPILAMTANAMPEDKVACLNAGMNDHIAKPF 1029
>gi|406597307|ref|YP_006748437.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
gi|406374628|gb|AFS37883.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
Length = 1373
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 187/651 (28%), Positives = 301/651 (46%), Gaps = 128/651 (19%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+AE A KS+FLA +SHEIRTPMNG++GML LL ++L++ Q A +L+AL
Sbjct: 823 QAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSNLTTEQSQRVNIASSSANSLLAL 882
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA KLE+E+V F++R +++ + + ++ KG+++ V +S +
Sbjct: 883 INDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLSKVSESKINS 942
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DP R +QI+TNL+ N+VKFTE+G + V L + T+ ++ L++ + + T
Sbjct: 943 DPSRIQQILTNLLSNAVKFTEQGELSVTAEL-----LPTNNQNTALMH------IAVADT 991
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
G G+ A+ K HL DA
Sbjct: 992 G-----IGIPAS-------KLPHLFDA--------------------------------- 1006
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
F Q D+ST+R YGGTG+GLSI+K L +L+ G IS + GS F
Sbjct: 1007 -------------FTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTTELGKGSRFDV 1053
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
T C E + + + + L + + +++D+ Q L G++ +S
Sbjct: 1054 T-----C-EIRYAEQRNAVRPQLAK--QDMCCLIIDDNASTRRAMQSQLKLWGVLTLTAS 1105
Query: 734 SIKDASSTAKNGLTSSEDKFQP---DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLP 790
SI++A S L SE + D++ +EK E+ F+ + H K
Sbjct: 1106 SIEEAISLY---LKDSEQEIPAIPIDVVFLEK-----AEEEEFSQHFGQILLDNHRTKHT 1157
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR------ 844
+L+L+ T +S E G D + KPL +S + +++ ++T + R
Sbjct: 1158 RLVLM-TQLSDMESSVVYGGVDVDESLPKPLTSSDLIRIVEESVNTSDYEAKPRFKKRED 1216
Query: 845 -------------GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
P ++ + +IL+V+DN +N++VA L+ G V+ A +
Sbjct: 1217 DPVRIIEGNTQHVQSPEENAKYTSDDNAYRILLVEDNAINQIVATNVLESEGYVVDVANN 1276
Query: 892 AKAALDKLQSPHC---FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
AL+ L+S + A MD QMPEMDGFEAT+ IR G A
Sbjct: 1277 GVEALELLKSSKLKAHYSAIVMDCQMPEMDGFEATKLIRY-----------------GAA 1319
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+PI+AMTA+ + D C+K GMD +++KP E + L +
Sbjct: 1320 GEVYKRVPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTLQHWLN 1370
>gi|343508478|ref|ZP_08745820.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
gi|342793792|gb|EGU29580.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
Length = 1803
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 185/634 (29%), Positives = 306/634 (48%), Gaps = 114/634 (17%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE A AKS FLA +SHEIRTPMN I+GM L + T L+ Q DY Q ++L+
Sbjct: 975 KQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQTQLNKKQADYVNKIQTSAESLL 1034
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL+LE F+L + +D+++ + S++++ K +EL V +
Sbjct: 1035 GIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVVSQRTQEKDLELLVDL-------- 1086
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
DP Q+ T+L+G+ ++ G I + +LA + T
Sbjct: 1087 --DP----QLPTHLIGDPLRL---GQILL--NLANNAIKFT------------------- 1116
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
D+ + ++ AE +I + G + V V DT
Sbjct: 1117 --------------------DRGEIIVKAE-------LIEL-----GDDIVEARFSVSDT 1144
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIG+ R+F F QAD+ST+R YGGTG+GL+ISK L E+M G I S GSTF
Sbjct: 1145 GIGMTQEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLSEMMNGSIWVESESGQGSTF 1204
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
FTA FG EY + + LPP +G+ ++VD+ + + L
Sbjct: 1205 FFTAQFGISSEYPQQQV-------LPPQSMQGVSVLIVDDSVAAREILFSLCDSLNFTAD 1257
Query: 731 MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG--FNAQLLDWKPNGHVFK 788
++ S +A + T+ +++ + D+IL + W + G Q+ + G +
Sbjct: 1258 VACSGAEALEKIQ---TAEQNQQKFDVILSD---WKMPKMDGIELGRQIEALQERGEIAA 1311
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---NKRQAGRG 845
P +++ T KDE + + KP+ +S + + +V++ E +K +AG
Sbjct: 1312 APHFVMV-TAYDKDEMLAQRQEVDIAASMTKPVSSSTLLDTVSRVMTKEGIASKTKAGNK 1370
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+ +S G + G ++L+V+DN +N+ +A L G V A + + A+D +++ F
Sbjct: 1371 L--DTSIANG-IAGARVLLVEDNAINQEIATELLHMVGVEVTAANNGQEAVDLVEA-QSF 1426
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MDIQMP MDG++AT+ IR T + D+ LPI+AMTA+ +
Sbjct: 1427 DLVLMDIQMPVMDGYQATQAIR------------------NTGRFDD--LPIIAMTANAM 1466
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
++CL GM+ ++ KP +++ L + +
Sbjct: 1467 SGDKEKCLAAGMNDHLPKPINPNQVFQALVDWIE 1500
>gi|408418332|ref|YP_006759746.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
gi|405105545|emb|CCK79042.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
Length = 1144
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 195/647 (30%), Positives = 304/647 (46%), Gaps = 131/647 (20%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
K ++ ++ AE A +KS+FLA +SHEIRTPMN I+G+ L TD++ Q DY +
Sbjct: 379 KAEKARIAAEEASRSKSEFLANMSHEIRTPMNAIIGLAHLAQKTDMTPKQNDYLNKIEAS 438
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G +L+ +IN++LD +KIEA KL +E++ F+L+A+LD+V++L + K+ KG+EL VS
Sbjct: 439 GLSLLGIINDILDFSKIEANKLSIESIEFDLQAVLDNVVNLINIKAEEKGLELLFDVSRD 498
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP ++GDP R QI+ NL GNS+KFT G I +KV L K A+ +
Sbjct: 499 VPLGLVGDPLRLGQILINLAGNSIKFTLNGQILIKVALLNEDPEKARAR--------LQF 550
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
V SG G + D+ L FQS + G
Sbjct: 551 SVSDSGIGM--------------TQDQISKL-----FQSFSQADGSTTRQYGG------- 584
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S Q LV +M G+IS S
Sbjct: 585 ----TGLGLTISKQ------------------------------LVGMMGGEISVKSIYG 610
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKP-----VRAAVTQY 720
GSTF+FTA FG + F + + PG G++ ++VD+ +R + ++
Sbjct: 611 EGSTFTFTAEFGVQTQKPFIPM-------ISPGELHGMRVLIVDDNEKSREILRDLMKEF 663
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
H N S + A + L +S K D++L+ D ++G D A+ +
Sbjct: 664 HFN---------VSEVPSGEAAISELKTSSKKAPYDLVLM--DWQMNGMDGIETARRI-- 710
Query: 781 KPNGHVFKLPKLILLATNISKDEC-DKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN- 838
K + + K+P IL+ T ++E +A+ G D ++KP+ S++ + + N
Sbjct: 711 KEDSGIAKIPA-ILMVTAFGREEVMSQAQTVGL-DGFLIKPINRSLLFDAIMDLFGRSNL 768
Query: 839 ------KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
R+ R NG + + G +IL+V+DN +N+ VA L+ G V A
Sbjct: 769 PDQDLVSRETTR--INGIDY----VCGARILLVEDNKINQQVATELLESAGLIVTVAGDG 822
Query: 893 KAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
AL L+ + FD MDIQMP MDGFE TR IR+ + +
Sbjct: 823 LEALAVLKDTDSVFDGILMDIQMPNMDGFETTRMIRKNPALS------------------ 864
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+AMTA+ + ++CL GM+ ++ KP E + L++ L K+
Sbjct: 865 --ELPIIAMTANAMAGDREKCLDAGMNDHIPKPIEPDILFKTLIKWL 909
>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|386342450|ref|YP_006038816.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|334864851|gb|AEH15322.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
Length = 1784
Score = 235 bits (600), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 190/653 (29%), Positives = 302/653 (46%), Gaps = 157/653 (24%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++++V F L +L+D+ +FSEK+ +K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRY- 1151
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L+G+S++ G + + + +K + E LL
Sbjct: 1152 -------------LLGDSLRL---GQVLINLM---NNAIKFTERGEVLL----------- 1181
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+LS +E D +DV L V D+
Sbjct: 1182 ------SLSLVEQQD---------------------------------DDVVLRFSVRDS 1202
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G+I S+ GSTF
Sbjct: 1203 GIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTF 1262
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT K ++ + K ++L +G+ +VVD+ + + L +G V
Sbjct: 1263 YFT-----VKLHISDGQKLVLEQEL----EGMSVLVVDDNATARDIMRTTLESMGFRVDT 1313
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKLP 790
S ++A S C + + L+DWK PN +
Sbjct: 1314 VRSGEEAISR----------------------CLL----QAYEVALIDWKMPNMDGLETA 1347
Query: 791 ---------------------KLILLATNISKD---ECDKAKAGGFADTVIMKPLRASMI 826
K+++++ + + + ++ G+ I KP+ AS +
Sbjct: 1348 RQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGY----ISKPISASRL 1403
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ + E R + L+GK+IL+V+DN +N VA+ L++ G +
Sbjct: 1404 LDGIMNAIGREGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLEVASEFLEQVGIIL 1463
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
A + + ALDKL H FD MD QMP MDG++AT+ IR
Sbjct: 1464 SIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR------------------- 1503
Query: 947 TAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
KR EL +LP++AMTA+ + D C++ GM+ +++KP E LY+ L K+
Sbjct: 1504 --KRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYL 1554
>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
Length = 1397
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 197/656 (30%), Positives = 301/656 (45%), Gaps = 150/656 (22%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
++ AEAA+ AKS+FLA +SHEIRTPMNG++GM LLL+T L+ QR +AQTA G++L+
Sbjct: 863 RLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNTSLAEEQRSFAQTALASGESLL 922
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KLELE + F+LR +LDD ++ + K+ +KG+E VP
Sbjct: 923 TVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVKAGDKGLEFICAALPDVPVRF 982
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA----ERTMVKTDAKDETLLNGGTEEG 547
+GDP R RQI+TNL GN+VKFT +G + V V L E +V+ KD T G
Sbjct: 983 IGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRETDEEVLVRFSVKD-------TGIG 1035
Query: 548 VCRSGTGQ-FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ R + F + + ++A+ M GG
Sbjct: 1036 IPREKLDRLFRSFTQVDAS--------------------------MTRKYGG-------- 1061
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S Q LVELM G+I S+
Sbjct: 1062 ----TGLGLAISRQ------------------------------LVELMSGEIGVNSQSG 1087
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
+GS F FT K +I S++ P G + +VVD+ + + L
Sbjct: 1088 IGSEFWFTLSLKK-------NIFPSENGQYPLDSITGTRLLVVDDNAENRNMLRMLLTSW 1140
Query: 726 GIMVK----MSSSIKDASSTAKNGLTSSEDKFQPDII---LVEKDCWISGEDSGFNAQLL 778
G+ V S++I+ A+ G D F+ II + E D + G L
Sbjct: 1141 GVRVSEVSCASTAIERLRQAAEEG-----DPFRIAIIDMEMPEIDGLMLGRSIKDETALA 1195
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
D L+++ + + + +K + GF + ++KP+R S + + +VL + +
Sbjct: 1196 D----------TALLMMNSIGRRPDNEKLRRSGFF-SFLVKPVRQSELYNTVSEVLFSRD 1244
Query: 839 KRQAGRGVPNGSSFHQGLLRGK----------------KILVVDDNGVNRMVAAGALKKF 882
N S + L G +IL+ +D+ VN++V G L K
Sbjct: 1245 IDPC-----NAESLQEKLAAGSVTLSEAVDSEKNDSPVRILLAEDSAVNQLVVTGILSKL 1299
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G V+ + + AL +L+ +D MDIQMPEMDG EATR IR S
Sbjct: 1300 GYVVDPVFNGQEALARLRE-FAYDLVIMDIQMPEMDGLEATRIIRDQAS----------- 1347
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ D +P++A+TA +H + CL+ GM+ YVSKP + L + K+
Sbjct: 1348 ---AVLRHD---VPVIALTAHAMHGDREICLQSGMNDYVSKPIDPPALIGVIKKWL 1397
>gi|373950837|ref|ZP_09610798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
gi|386323330|ref|YP_006019447.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|333817475|gb|AEG10141.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|373887437|gb|EHQ16329.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
Length = 1784
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 190/653 (29%), Positives = 302/653 (46%), Gaps = 157/653 (24%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++++V F L +L+D+ +FSEK+ +K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRY- 1151
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L+G+S++ G + + + +K + E LL
Sbjct: 1152 -------------LLGDSLRL---GQVLINLM---NNAIKFTERGEVLL----------- 1181
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+LS +E D +DV L V D+
Sbjct: 1182 ------SLSLVEQQD---------------------------------DDVVLRFSVRDS 1202
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G+I S+ GSTF
Sbjct: 1203 GIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTF 1262
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT K ++ + K ++L +G+ +VVD+ + + L +G V
Sbjct: 1263 YFT-----VKLHISDGQKLVLEQEL----EGMSVLVVDDNATARDIMRTTLESMGFRVDT 1313
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKLP 790
S ++A S C + + L+DWK PN +
Sbjct: 1314 VRSGEEAISR----------------------CLL----QAYEVALIDWKMPNMDGLETA 1347
Query: 791 ---------------------KLILLATNISKD---ECDKAKAGGFADTVIMKPLRASMI 826
K+++++ + + + ++ G+ I KP+ AS +
Sbjct: 1348 RQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGY----ISKPISASRL 1403
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ + E R + L+GK+IL+V+DN +N VA+ L++ G +
Sbjct: 1404 LDGIMNAIGREGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLEVASEFLEQVGIIL 1463
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
A + + ALDKL H FD MD QMP MDG++AT+ IR
Sbjct: 1464 SIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR------------------- 1503
Query: 947 TAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
KR EL +LP++AMTA+ + D C++ GM+ +++KP E LY+ L K+
Sbjct: 1504 --KRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYL 1554
>gi|158338793|ref|YP_001519970.1| two-component sensor histidine kinase [Acaryochloris marina
MBIC11017]
gi|158309034|gb|ABW30651.1| two-component sensor histidine kinase [Acaryochloris marina
MBIC11017]
Length = 1318
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 202/645 (31%), Positives = 306/645 (47%), Gaps = 107/645 (16%)
Query: 357 HIVKVEDDFHKM-QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
+++K E + +++ +E + AE A AKS+FLA +SHEI+TPMNG LGM LLLDT+L S
Sbjct: 761 YLLKQERENNRLLKEARKAAEEAVQAKSEFLANMSHEIKTPMNGALGMAGLLLDTELQSE 820
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
QR++ +T Q CG +L+ +IN++LD +KIEA KL+LE FNLR +++ L L + K+ K
Sbjct: 821 QRNFVETIQNCGDSLMVIINDILDFSKIEAGKLDLEECSFNLRTCIEEALDLLAVKAAQK 880
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
+EL + E V GDP R RQI+ NL+GN++KFT G + V V
Sbjct: 881 QLELNYLWHADITEQVEGDPTRLRQILVNLIGNAIKFTNVGEVTVAV------------- 927
Query: 536 DETLLNGGTE-EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMA 594
G E + VC A D + ++ +H
Sbjct: 928 ------GAREIQHVC--------------ALDPQKIAEEVQHF----------------- 950
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
+V + V GI P R+F F Q DSS +R YGGTG+ L+ISK L EL
Sbjct: 951 ------EVEIAVNDTGIGI--PPDNMSRLFDSFSQVDSSITRQYGGTGLALTISKHLCEL 1002
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV- 713
M G++ S GS+F+FT V + +E P + ++VD+
Sbjct: 1003 MGGRMWVRSEVGKGSSFAFTVQL-----QVKPESAGLAAETRTPALANKRVLIVDDNVTS 1057
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF 773
R +TQ ++ G+ K ++S++DA +N + F II D + +D G
Sbjct: 1058 RRLLTQQTID-WGMKPKSANSVEDALKMLQN----VPEPFDVAII----DWQMPQKDGGV 1108
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
AQ + + + +P LI+L+T I D KA+ KP++ ++ L V
Sbjct: 1109 LAQEI--RNRSALASMP-LIVLSTVI--DSKLKAENKLLFQARCHKPIKPKLLRQSLLDV 1163
Query: 834 LSTENKRQAGRGVPNGSS--FHQGLLRG--KKILVVDDNGVNRMVAAGALKKFGATVECA 889
+ + R VP ++ + L + KILV +D VN+ + L+K G +
Sbjct: 1164 FAAP---ELSRKVPQSTAPKIDEELAQQFPLKILVAEDVVVNQKLVLLLLQKMGYRADVV 1220
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ ALD L +D MD+QMPEMDG A R+I + S+A
Sbjct: 1221 QNGLEALDALHR-QPYDLILMDMQMPEMDGLTAARQICEEYSEAERPY------------ 1267
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
I+A+TA+ + CL GM+ Y+SKP + E L R +
Sbjct: 1268 -------IIALTANAMQGDRQRCLDAGMNAYISKPIQVEELVRAI 1305
>gi|406830748|ref|ZP_11090342.1| PAS sensor protein [Schlesneria paludicola DSM 18645]
Length = 1117
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 118/623 (18%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS FLA +SHEIRTP+N I+GM L+ DTDL++TQR+Y Q G++L+++IN++LD
Sbjct: 460 AKSDFLANMSHEIRTPLNAIIGMTELVRDTDLNTTQREYLAMVQESGESLLSVINDILDF 519
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIEA KL LE V FNLR +L D + + ++ K +ELA V+ VP V GDP R RQ
Sbjct: 520 SKIEAGKLSLERVSFNLREMLGDTMKSLALRAHRKRLELACHVAHGVPAAVEGDPHRLRQ 579
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLN-GGTEEGVCRSGTGQFNTL 559
I+ NLVGN++KFTERG + + V AE T + DE +L+ T+ G+ S
Sbjct: 580 IVVNLVGNAIKFTERGEVVLDVE-AEYT-----SGDELILHFRVTDTGIGISADQLHTIF 633
Query: 560 SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
E AD + GG TG+G+ +S+
Sbjct: 634 EAFEQADTSTT-----------------------RRYGG------------TGLGLAISS 658
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
+ LVELM+G+I S GSTF F A F
Sbjct: 659 R------------------------------LVELMQGRIWVESELNCGSTFHFLAKFSM 688
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV-----TQYHLNRLGIMVKMSSS 734
+ + +S PP GL+ ++VD+ + T + +N + + S
Sbjct: 689 SS----PEAEARESTIYPPMLHGLRVLIVDDNATNRRILIEILTNWQMNPVAV-----SC 739
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+ DA S + T S D QP +V D + D A+ + P + +++
Sbjct: 740 VTDAISELR---TMSTDG-QP-YAMVLTDANMPDVDGFELARQIHENP---ILCRSMVMM 791
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS-SFH 853
L + + + G + ++KP++ S + L +L + + G + S S
Sbjct: 792 LTSGDRPGDISRCGQLGVS-AYLVKPIKQSEL---LDAILVAVGGQSSLTGCLDKSLSSA 847
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
+ + K +L+ +D+ +N+ +A G L+K+G V A + A++ L + FD MD+Q
Sbjct: 848 RKATQSKSVLLAEDSLINQKLAIGLLEKWGHRVTVANDGQEAVN-LSGQYIFDLALMDVQ 906
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDG +ATR IR+ E ++ G +HLPILAMTA + + CL
Sbjct: 907 MPEMDGLDATRAIRRRE------ILTG------------VHLPILAMTAHAMKGDRERCL 948
Query: 974 KCGMDGYVSKPFEEENLYRELAK 996
GMD Y+ KP E L++ + +
Sbjct: 949 AAGMDDYLMKPIRAEQLFQAIER 971
>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|378707231|ref|YP_005272125.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|418024379|ref|ZP_12663362.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|353536339|gb|EHC05898.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1786
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 190/655 (29%), Positives = 301/655 (45%), Gaps = 159/655 (24%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++++V F L +L+D+ +FSEK+ +K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRY- 1151
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L+G+S++ G + + + +K + E LL
Sbjct: 1152 -------------LLGDSLRL---GQVLINLM---NNAIKFTERGEVLL----------- 1181
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+LS +E D +DV L V D+
Sbjct: 1182 ------SLSLVEQQD---------------------------------DDVVLRFSVRDS 1202
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G+I S+ GSTF
Sbjct: 1203 GIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTF 1262
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT K ++ + K ++L +G+ +VVD+ + L +G V
Sbjct: 1263 YFT-----VKLHISDGQKLVLEQEL----EGMSVLVVDDNATARDIMCTTLESMGFRVDT 1313
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKLP 790
S ++A S C + + L+DWK PN +
Sbjct: 1314 VRSGEEAISR----------------------CLL----QAYEVALIDWKMPNMDGLETA 1347
Query: 791 -----------------------KLILLATNISKD---ECDKAKAGGFADTVIMKPLRAS 824
K+++++ + + + ++ G+ I KP+ AS
Sbjct: 1348 RQIQLQAQSQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGY----ISKPISAS 1403
Query: 825 MIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
+ + + E R + L+GK+IL+V+DN +N VA+ L++ G
Sbjct: 1404 RLLDGIMNAIGREGILPVRRRTEELAPQLLLPLQGKRILLVEDNEMNLEVASEFLEQVGI 1463
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
+ A + + ALDKL H FD MD QMP MDG++AT+ IR
Sbjct: 1464 ILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR----------------- 1505
Query: 945 DGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
KR EL +LP++AMTA+ + D C++ GM+ +++KP E LY+ L K+
Sbjct: 1506 ----KRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYL 1556
>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
Length = 835
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 197/669 (29%), Positives = 301/669 (44%), Gaps = 155/669 (23%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A A AKS+FLAT+SHEIRTP++G++GM LLL LS QR++A+T +AL++LI
Sbjct: 269 ARATAQAKSEFLATMSHEIRTPLSGVIGMSELLLGGRLSGEQREFAETLNTSAEALLSLI 328
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +K E+ LELE V F+L+A+ +DV+ + ++R K I+L + +P F +GD
Sbjct: 329 NDILDFSKFESGHLELEEVPFDLQALTEDVVQILGSRARKKRIDLIARYDNNLPRFFVGD 388
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
PGR RQI+ NLVGN+VKFTERGH+ + VH D+ D+ L+ E+ +G G
Sbjct: 389 PGRIRQILLNLVGNAVKFTERGHVLLAVHH------NGDSDDKIRLHFEVED----TGIG 438
Query: 555 -QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
N+L + +D+F + E + GG TG+
Sbjct: 439 IPENSLPHI--------FDRFIQVTSGEARR-----------FGG------------TGL 467
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +S Q LVE M GQIS S GSTF F
Sbjct: 468 GLAISRQ------------------------------LVERMSGQISVSSVLGKGSTFRF 497
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
E +E LP G +VD+ + V + V
Sbjct: 498 LLPLQVDPE--------PSTEVLPSADLAGAHIAIVDDSEINRRVLVELMQSWNSRV--- 546
Query: 733 SSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCW-ISGEDSGFNAQLLDWKPNGHVFKLP 790
S +DA S A L +++ + P DI +++ D +SG + G + +
Sbjct: 547 SPYEDAQS-ALVALRAAQSRGTPYDIAVIDSDLPDLSGAELGRELR------RDPALQDL 599
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN------------ 838
+++LL + + + + + GF+ + KP + ++ L VL ++
Sbjct: 600 RMVLLTSTPRQGDGRRYQELGFS-GYLTKPTKRGVLLETLSTVLGSKREGVPVPLVTRHR 658
Query: 839 --KRQAGRGV---------------------------PNGSSFHQGLLRGKKILVVDDNG 869
+ QA R + P + R ++L+VDD
Sbjct: 659 LAESQAIRRISTPMDVAIPEWAPVGVTDGVPEPVAPDPRADMLSTAVRRSSRVLLVDDTP 718
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
VNR +A L+K G V+ A + + A+DK + +D FMD QMPEMDGFEAT RIR
Sbjct: 719 VNRRLAGKMLEKLGLVVDIAVNGREAVDK-SAELSYDLIFMDCQMPEMDGFEATTRIRSR 777
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
E+ G+A H PI+AMTA + C+ GMD Y+SKP ++
Sbjct: 778 EA--------------GSA-----HTPIIAMTASAMPEDRKRCIDVGMDDYISKPVRQDT 818
Query: 990 LYRELAKFF 998
L ++++
Sbjct: 819 LRSTVSRWL 827
>gi|390949604|ref|YP_006413363.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426173|gb|AFL73238.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1347
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 195/626 (31%), Positives = 290/626 (46%), Gaps = 120/626 (19%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEA+ KS+FLA +SHEIRTPMNG++GM LLL+T L+ Q +A+ A+ G++L+ALI
Sbjct: 659 AEASTQDKSRFLANMSHEIRTPMNGVIGMTRLLLETGLNEEQHRFAEIARTSGESLLALI 718
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KLEL+ + F+ R L+DV+ L + +++K +EL + VP V GD
Sbjct: 719 NDILDFSKIEAGKLELDLLSFDPRGTLEDVVELLAFNAQSKELELTYQIDPDVPVSVRGD 778
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
P RQI+ NL GN++KFT+ G + + V A +T K + E + SG G
Sbjct: 779 PRYLRQILVNLAGNAIKFTDHGEVAIHVKAATKTADKVLIRFE----------IHDSGIG 828
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
L G HL A N+S GG TG+G
Sbjct: 829 IPEDLRG--------------HLFTAFSQLDNSSTRRF----GG------------TGLG 858
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +S Q LVELM G I SR + GS F FT
Sbjct: 859 LVISKQ------------------------------LVELMNGAIGVESRAERGSIFWFT 888
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
A E+ ++ KG K +VVD+ + L G ++ +++
Sbjct: 889 A------EFELPAVQPVAPLPTYADLKGGKVLVVDDHATNRLLAGTLLRSWGCRIEEANN 942
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+A ++ D FQ ++ D + D L+ P + +L+L
Sbjct: 943 GAEALEWLHQAARAA-DPFQAALL----DLKMPAMDGLELGNLIKQDPE---IRDTRLVL 994
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP------- 847
L + +++ + + + GF D + KPLR ++ CL V+ E R P
Sbjct: 995 LTSLVARGDAARMQQAGF-DGYLTKPLRQQLLHDCLALVMGREVA--TLRAAPPAIVTRH 1051
Query: 848 -----NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKL-Q 900
N + +IL+VDDN N++VA G LK+ G + A++ AL+ L +
Sbjct: 1052 TLADINRQALGASASSQARILIVDDNLTNQIVATGILKQLGYSRTATASNGLEALEALAR 1111
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
P ++ MD QMP+MDGFE RRIR E+ GTA RD +PI+AM
Sbjct: 1112 DP--YELVLMDGQMPDMDGFETARRIRLGEA--------------GTANRD---VPIVAM 1152
Query: 961 TADVIHATFDECLKCGMDGYVSKPFE 986
TA V+ + CL+ GMD Y+SKP +
Sbjct: 1153 TALVMQGDRERCLEAGMDDYLSKPVQ 1178
>gi|395006344|ref|ZP_10390171.1| PAS domain S-box [Acidovorax sp. CF316]
gi|394315692|gb|EJE52476.1| PAS domain S-box [Acidovorax sp. CF316]
Length = 1730
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 196/660 (29%), Positives = 303/660 (45%), Gaps = 142/660 (21%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K E+D + +E+ AE A AKS+FLA +SHEIRTPMN I+GM L L T L + QR+Y
Sbjct: 961 KSEEDIRRAKEM---AEDATRAKSEFLANMSHEIRTPMNAIIGMSHLALQTALDNKQRNY 1017
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ ++L+ +IN++LD +KIEA K+ +E V F L +LD V +L K+ +KG+EL
Sbjct: 1018 IEKVNRAAESLLGIINDILDFSKIEAGKMSMEQVDFRLEDVLDHVANLIGMKAEDKGLEL 1077
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+D VP T LVG+ ++ G I + VK + E +
Sbjct: 1078 LFSTADDVP--------------TALVGDPLRL---GQILANLG---SNAVKFAEQGEIV 1117
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
L G+E +I GG
Sbjct: 1118 L--------------------GIE-------------------------LIGQQGEPGG- 1131
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+V L V+D+GIG+ R+F F QADSST+R YGGTG+GL+ISK LVE+M+G+I
Sbjct: 1132 -EVELHFWVKDSGIGMTPEQCARLFQSFSQADSSTTRRYGGTGLGLAISKTLVEMMQGRI 1190
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GSTF F FG + + + + GL +VVD+ +
Sbjct: 1191 WVESTVGQGSTFHFLVHFGLQAQPMPRRMFDANE------LLGLSVLVVDDNATAREILS 1244
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS---GFNAQ 776
R G+ V TA++G + + +VE G DS ++
Sbjct: 1245 TMARRFGLEV----------DTARDG--------EEGLRMVE------GADSRSLAYDLV 1280
Query: 777 LLDWK-PN----GHVFKLPKL-------ILLATNISKDECDKA--KAGGFADTVIMKPLR 822
L+DWK P V ++ L +++ T ++E A G + V+ KP+
Sbjct: 1281 LMDWKMPRMDGAETVRRMQALKGGAAPAVIMVTAFGREEAMNAVHSRGARVNAVLTKPVT 1340
Query: 823 ASMIAACLQQVLS---TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
AS + + + L + R A R G + H L+G ++L+V+DN +N+ +A L
Sbjct: 1341 ASTLLEAVGEALGRGRVVSDRVASRA--QGQTEHLQQLKGARVLLVEDNALNQELAMELL 1398
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
++ G V A + + ALD L + FD MD QMP MDG+ ATR +R + A+
Sbjct: 1399 RQAGIEVVLANNGQEALDLLAADPRFDGVLMDCQMPVMDGYTATRHLRSLPQFAD----- 1453
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LPI+AMTA+ + ++ ++ GM ++ KP E ++ +A++ +
Sbjct: 1454 ---------------LPIIAMTANAMAGDREKVIEAGMVDHIPKPLRVEEMFACMARWIQ 1498
>gi|451965157|ref|ZP_21918417.1| hypothetical protein ET1_07_00070 [Edwardsiella tarda NBRC 105688]
gi|451315912|dbj|GAC63779.1| hypothetical protein ET1_07_00070 [Edwardsiella tarda NBRC 105688]
Length = 1521
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 203/678 (29%), Positives = 309/678 (45%), Gaps = 131/678 (19%)
Query: 346 LVGYILYGAAIHIVKVEDDFHK-------MQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
+V Y G + +V + D + +Q K+ AE A+ AKS FLA +SHE+RTP+N
Sbjct: 721 VVEYQGVGDTLMLVGINRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLN 780
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
ILGMLALLL + L+ Q DYA ++ +AL+ L+N++LD +KIEA K+ELEA FNL
Sbjct: 781 AILGMLALLLKSGLTHRQADYATKSEAAAQALLRLLNDILDYSKIEAGKMELEAEPFNLC 840
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
A+L D+ + + S K +E+ + ++P +++GD R +Q++ NL GN++KFTE+G +
Sbjct: 841 ALLQDLAVILASNSHKKPVEVLFDIDPRLPRWLIGDSLRLQQVLINLGGNALKFTEQGEV 900
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
+ +HL E+ DA++ TL G + G+ + Q SG
Sbjct: 901 VLFIHLIEQ-----DAQNATLHFGVRDTGIGIAPEKQRLIFSGFS--------------- 940
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
Q+ ASI GG TG+G+
Sbjct: 941 -----QAEASITRRF---GG------------TGLGL----------------------- 957
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
SIS+ V +M + S P GS F FT E + S E
Sbjct: 958 -------SISQRFVAMMGSTLELESEPGKGSLFHFTLTLPLAAE------QHSDDEQRRQ 1004
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP--- 755
GL ++VD+ P ++ Q LG V D ++ + LT + Q
Sbjct: 1005 ALLGLHVLMVDDNPTARSLLQQMALTLGWRV-------DCAAEGEQALTLIAQQQQAGDP 1057
Query: 756 -DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDEC---DKAKAGG 811
D++ + D + G D Q L + H +LP L+++ N EC ++ G
Sbjct: 1058 YDVLFI--DWLMPGLDGWQTIQRL--RSRLHEKQLPLLVMVTAN--DRECLLQRSSEEQG 1111
Query: 812 FADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV-PNGSSFHQG-LLRGKKILVVDDNG 869
D ++KP+ M+ L V +RQ + P H G L G +ILVV+DN
Sbjct: 1112 ILDGFLLKPVTPLML---LDSVAGALRERQNLTQIAPPAPVPHSGKPLNGVRILVVEDNQ 1168
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQ 928
N+ +A L+ GA V AA + A+D+L+ +P FD MD+QMP MDG AT+ IR
Sbjct: 1169 NNQQIARELLEDEGAIVTLAAHGQEAIDRLKATPQGFDLVLMDLQMPVMDGINATQYIRS 1228
Query: 929 MESKANEQMMNGGSSVDGTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEE 987
+ LH LPI+AMTA+ + + CL GM+ ++ KPF
Sbjct: 1229 HLT---------------------LHTLPIIAMTANAMVSDRQACLAAGMNDHIGKPFNL 1267
Query: 988 ENLYRELAKFFKSKPLSG 1005
L + + K + PL+
Sbjct: 1268 RELIQTIQKHLLTPPLTA 1285
Score = 40.4 bits (93), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 23/225 (10%)
Query: 85 QFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFER--PLLSGVAYAPRVV- 141
+F + + ++A L T+H ++ + F++Y R P + G+ + RV
Sbjct: 63 RFTLPLYGLNAAKGLYETYH------QINANQFSDYIRALDLPRQYPGVRGIGFIQRVPR 116
Query: 142 -DAQR--EQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSH---VKSLDMMSGEEDR 195
D QR + + T + +P+ + D Y ++ Y +P+S + LD+ S
Sbjct: 117 DDLQRFTQATRNDNSPGFTPHQLQPNNVGDLY--LIKYIQPLSPNQGAQGLDVRSEPVRW 174
Query: 196 ENILRARATGKAVLTRPFRLL--GSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGG 253
+ +A +G+ LT P L+ G +L PVY + T E+R A G I
Sbjct: 175 AALQKAIDSGQPSLTGPIHLVQDKQRQPGALLYLPVYTMESALLQTPEQRRAALLGIIYS 234
Query: 254 PFDVESLVENLLGQLAGNQAILVNVYDMTN--ASDPLIMYGDQNQ 296
P + L+ N+ +G + + +YD T+ D LI D ++
Sbjct: 235 PLVIAELLHNIPEYTSGR--VDIELYDNTHELKRDNLIFDADNSK 277
>gi|407684320|ref|YP_006799494.1| diguanylate cyclase [Alteromonas macleodii str. 'English Channel
673']
gi|407245931|gb|AFT75117.1| GGDEF domain protein [Alteromonas macleodii str. 'English Channel
673']
Length = 1373
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 188/651 (28%), Positives = 301/651 (46%), Gaps = 128/651 (19%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+AE A KS+FLA +SHEIRTPMNG++GML LL ++L++ Q A +L+AL
Sbjct: 823 QAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSNLTTEQSQRVNIASSSANSLLAL 882
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA KLE+E+V F++R +++ + + ++ KG+++ V +S +
Sbjct: 883 INDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLSKVSESKINS 942
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DP R +QI+TNL+ N+VKFTE+G + V L + T+ ++ L++ + + T
Sbjct: 943 DPSRIQQILTNLLSNAVKFTEQGELSVTAEL-----LPTNNQNTALMH------IAVADT 991
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
G G+ A+ K HL DA
Sbjct: 992 G-----IGIPAS-------KLPHLFDA--------------------------------- 1006
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
F Q D+ST+R YGGTG+GLSI+K L +L+ G IS + GS F
Sbjct: 1007 -------------FTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTTELGKGSRFDV 1053
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
T C E + + + + L + + +++D+ Q L G++ +S
Sbjct: 1054 T-----C-EIRYAEQRNAVRPQLAK--QDMCCLIIDDNASTRRAMQSQLKLWGLLTLTAS 1105
Query: 734 SIKDASSTAKNGLTSSEDKFQP---DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLP 790
SI++A S L SE + D++ +EK E+ F+ N K
Sbjct: 1106 SIEEAISLY---LKDSEQEIPAIPIDVVFLEK-----AEEEEFSQHFGQMLLNNPRTKHT 1157
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR------ 844
+L+L+ T +S E G D + KPL +S + +++ ++T + R
Sbjct: 1158 RLVLM-TQLSDMESSVVYGGVDVDESLPKPLTSSDLIRIVEESVNTSDYEAKPRFKKRED 1216
Query: 845 ---GVPNGSSFH----------QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+ G++ H +IL+V+DN +N++VA L+ G V+ A +
Sbjct: 1217 DLVHIIEGNTQHVQSPEENAKSTSDDNAYRILLVEDNAINQIVATNVLESEGYVVDVANN 1276
Query: 892 AKAALDKLQSPHC---FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
AL+ L+S + A MD QMPEMDGFEAT+ IR G A
Sbjct: 1277 GVEALELLKSSKLKAHYSAIVMDCQMPEMDGFEATKLIRY-----------------GAA 1319
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+PI+AMTA+ + D C+K GMD +++KP E + L +
Sbjct: 1320 GEVYKRVPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTLQHWLN 1370
>gi|374317226|ref|YP_005063654.1| histidine kinase,Response regulator receiver domain protein,histidine
kinase,Hpt domain-containing protein [Sphaerochaeta
pleomorpha str. Grapes]
gi|359352870|gb|AEV30644.1| histidine kinase,Response regulator receiver domain protein,histidine
kinase,Hpt domain-containing protein [Sphaerochaeta
pleomorpha str. Grapes]
Length = 953
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 195/684 (28%), Positives = 323/684 (47%), Gaps = 124/684 (18%)
Query: 325 QKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQ 384
+K L A LF + L G L I ++ + +++++ + A A AKS+
Sbjct: 167 EKQKNEIEKLKDAMLLFSLIALGGATL--TFILLMNQKKTLYQLEKTRGIAIANSNAKSE 224
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FL+ +SHEIRTPMN I+G+ L L T+L+ +QRDY + QI + L+ +IN++LD +KIE
Sbjct: 225 FLSNMSHEIRTPMNAIIGLTYLALKTNLTPSQRDYLKRIQISSQHLLGIINDILDFSKIE 284
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A K+ LE++ F L +LD+V +L +EK+ KG+EL V VP ++GDP R Q++ N
Sbjct: 285 AGKMSLESIPFELEKVLDNVANLTAEKASAKGLELIFVVDSDVPNHLIGDPLRLGQVLIN 344
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
N+VKFTE+G I + +H VK D + + LL+ + T G+
Sbjct: 345 YANNAVKFTEKGEISIHIH------VKNDTESDVLLHFEVRD-----------TGVGISE 387
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
R + F+ Q++ S+ GG TG+G+ +S +
Sbjct: 388 DYKRQLFHSFQ--------QADNSVTRRY---GG------------TGLGLAISKK---- 420
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
S+ GG + VE + GQ GSTF FTA+ GK E
Sbjct: 421 ---------LSQMMGG--------EVGVESVFGQ---------GSTFWFTALIGKSNE-- 452
Query: 685 FEDIKQSKSEDLPPGFKGLKAVVVDEKP-VRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
+ +S +GL+ +VVD+ RA +T N + +SS AK
Sbjct: 453 -----KQRSYVPVSDLRGLRVLVVDDNEHARAVITDMLENMTFRVTPVSSGAAALEEIAK 507
Query: 744 NGLTSSEDKFQPDIILVEKDCW----ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
E+ F D++ ++ W ++G ++ + + P H +++ T
Sbjct: 508 E--KRKEEYF--DLVFLD---WQMPVMNGIETARRIKEIALDPAPH-------LVIITAY 553
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL---STENKRQAGRGVPNGSSFHQGL 856
++E + + V++KP+ AS++ +L E + + G+ P G +
Sbjct: 554 GREEVIREAEEEGIENVLIKPVGASLLFDTAMHLLRKQGNETRSEIGQMPPLGEAGSG-- 611
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ G ++L+V+DN N++VA L++ G V A++ K A+ K+Q D MD+QMP
Sbjct: 612 IGGARVLLVEDNEENQLVAMEILREAGCVVSVASNGKEAIAKVQQA-AVDIILMDVQMPV 670
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG ATR IR++ AN LPI+AMTA+ + D CL+ G
Sbjct: 671 MDGLAATREIRRLPYYAN--------------------LPIIAMTANAMKEDRDHCLEAG 710
Query: 977 MDGYVSKPFEEENLYRELAKFFKS 1000
M+ Y++KP + + L+ + K++ +
Sbjct: 711 MNDYITKPIDPKTLFAVIGKYYTA 734
>gi|333993153|ref|YP_004525766.1| PAS/PAC sensor hybrid histidine kinase [Treponema azotonutricium
ZAS-9]
gi|333734730|gb|AEF80679.1| PAS/PAC sensor hybrid histidine kinase [Treponema azotonutricium
ZAS-9]
Length = 857
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 199/680 (29%), Positives = 306/680 (45%), Gaps = 122/680 (17%)
Query: 334 LTTAFFLFVIGLLVGYILYGAAIHIV----KVEDDFHKMQELKVRAEAADVAKSQFLATV 389
L +A +G+L ++ AA IV K+++ ++ EL+ AE+A AK FL+ +
Sbjct: 283 LISAAIFMSLGILAAFV---AANFIVIPFKKIQEQNVRLAELRETAESASRAKGDFLSNM 339
Query: 390 SHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA-QICGKALIALINEVLDRAKIEARKL 448
SHE+RTPMN I+GM ++ T + ++DY + + L+ +IN++LD +KIEA K
Sbjct: 340 SHEMRTPMNAIIGMTSIA-KTSHAIERKDYCLSKIEDASTHLLGVINDILDMSKIEANKF 398
Query: 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGN 508
+L V FN +L +++ S + K + V V +P F++ D R Q+I NL+ N
Sbjct: 399 DLSPVEFNFEKMLQKTVNVISFRVDQKQQKFRVRVDKNIPPFLIADDQRLTQVIANLLSN 458
Query: 509 SVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGR 568
+VKFT ER V DAK G ++G+C
Sbjct: 459 AVKFT-----------PERGSVWLDAK-----WIGEQDGIC------------------- 483
Query: 569 NSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
T+ + V D+GIGI Q ++F F
Sbjct: 484 ----------------------------------TIEISVTDSGIGISAEQQAKLFTSFT 509
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
QA+S+TSR +GGTG+GL+ISK +VE+M G+I S GS F FT E +
Sbjct: 510 QAESATSRKFGGTGLGLAISKRIVEMMNGRIWIESELGKGSAFIFT----------IEAV 559
Query: 689 KQSKSEDLP----PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS-TAK 743
K SK+ P K K + VD+ P + G ++S ++A K
Sbjct: 560 KVSKAATAPEIPVTDRKSFKVLAVDDDPETREYFGEIMLHYGFTCDLASGAEEAQGLIEK 619
Query: 744 NGLTSSE--DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
NG S D P I +E WI ++ A P V +++ AT S
Sbjct: 620 NGPYSLYFIDYKMPGINGIELSKWIKERETQEAAS----PPKKTVV----IMISATEWSM 671
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
E + AG + + KP S I + + L ++ + + S G G
Sbjct: 672 IENEAKNAG--VEHFLSKPFFPSSIVDYINEYLGLDHHLAQKKEADDDS----GCFEGFC 725
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
IL+ +D +NR + L+ ++CA++ AL ++P + FMD+QMPEMDG
Sbjct: 726 ILLAEDVQINREIVLALLEPTALVIDCASNGVEALKMFSEAPDKYAMIFMDVQMPEMDGL 785
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATR IR E K E M +AKR +PI+AMTA+V + CL GM+ +
Sbjct: 786 EATRCIRAFEEKRFEGM--------ASAKR----VPIVAMTANVFREDIERCLASGMNDH 833
Query: 981 VSKPFEEENLYRELAKFFKS 1000
V KP + + R+L ++ +
Sbjct: 834 VGKPIDISEVMRKLRQYLNA 853
>gi|449143910|ref|ZP_21774729.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
gi|449080441|gb|EMB51356.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
Length = 1325
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 194/640 (30%), Positives = 302/640 (47%), Gaps = 127/640 (19%)
Query: 369 QELKVRAEAADV---AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
QEL+ +AAD AK FLA +SHEIRTPMN ILGM L L+T L +TQR Y
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
K L+ +IN++LD +KIEA KL +E + F+L +LD+V ++ S K++ KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P ++GDP R Q++ NL GN+VKFT++G I + + + + + LL +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ-----LNEQQVMLLFAVKD 765
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ G Q +K L +A Q++ SI GG
Sbjct: 766 TGI---GIAQ----------------EKLDDLFNAFS-QADNSITRQY---GG------- 795
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S Q LVELM GQIS S
Sbjct: 796 -----TGLGLSISKQ------------------------------LVELMGGQISVHSEE 820
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL---KAVVVDEKPVRAAVTQYHL 722
GSTF F+ V G ++++K D+ GL + +VVD+
Sbjct: 821 GKGSTFEFSVVCG---------LQEAKMRDIAQPLYGLANKRVLVVDDND---------- 861
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTS-SEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ I+ + ++++ T NG + SE + +P D++ V+ + G N L
Sbjct: 862 SARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFVDWNM------PGMNGIELLT 915
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ + L T +D ++ D +I+KP+ S + + ++ R
Sbjct: 916 RVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVR 975
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+P S + G+K+L+V+DN VN+ VA G L++ G +V A + + AL+KL+
Sbjct: 976 HKQNELPQHSRPN---FAGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLE 1032
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ FD MD+QMP MDG AT+ IR +G K +LPI+AM
Sbjct: 1033 NAD-FDLVLMDMQMPVMDGITATKHIR----------------TNGRWK----NLPIVAM 1071
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
TA+ + A + CL+ GM+G++SKP E + Y+ L +F KS
Sbjct: 1072 TANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
Length = 1792
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 190/661 (28%), Positives = 302/661 (45%), Gaps = 165/661 (24%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++++V F L +L+D+ +FSEK+ +K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRY- 1151
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L+G+S++ G + + + +K + E LL
Sbjct: 1152 -------------LLGDSLRL---GQVLINLM---NNAIKFTERGEVLL----------- 1181
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+LS +E D +DV L V D+
Sbjct: 1182 ------SLSLVEQQD---------------------------------DDVVLRFSVRDS 1202
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G+I S+ GSTF
Sbjct: 1203 GIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQLGHGSTF 1262
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT K ++ + K ++L +G+ +VVD+ + + L +G V
Sbjct: 1263 YFT-----VKLHISDGQKLVLEQEL----EGMSVLVVDDNATARDIMRTTLESMGFRVDT 1313
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKLP 790
S ++A S C + + L+DWK PN +
Sbjct: 1314 VRSGEEAISR----------------------CLLQA----YEVALIDWKMPNMDGLETA 1347
Query: 791 -----------------------------KLILLATNISKD---ECDKAKAGGFADTVIM 818
K+++++ + + + ++ G+ I
Sbjct: 1348 RQIQLQAQSQSQSQSQPQSHPQPQPQPQPKILMVSAHADHEFLTQIEQLALAGY----IS 1403
Query: 819 KPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGA 878
KP+ AS + + + E R + L+GK+IL+V+DN +N VA+
Sbjct: 1404 KPISASRLLDGIMNAIGREGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLEVASEF 1463
Query: 879 LKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
L++ G + A + + ALDKL H FD MD QMP MDG++AT+ IR
Sbjct: 1464 LEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQATQAIR----------- 1511
Query: 939 NGGSSVDGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
KR EL +LP++AMTA+ + D C++ GM+ +++KP E LY+ L K+
Sbjct: 1512 ----------KRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKY 1561
Query: 998 F 998
Sbjct: 1562 L 1562
>gi|386827600|ref|ZP_10114707.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386428484|gb|EIJ42312.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 1359
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 212/661 (32%), Positives = 304/661 (45%), Gaps = 144/661 (21%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AEAA AKS+FLA +SHEIRTPMNG++GM LLL+T L+ QR+YA + AL
Sbjct: 501 KETAEAATRAKSEFLANMSHEIRTPMNGVMGMTELLLNTTLTVQQREYASIIRNSTNALQ 560
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
L+N++LD +KIEA KL LE + F+L +V L S + +KG +L V S P +V
Sbjct: 561 TLLNDILDFSKIEAGKLTLEPIPFDLETATLEVARLLSITASSKGFDLIVRYSPTAPRYV 620
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR- 550
+GD GR RQI+TNL GN+VKFT+RG++FV V AERT EE V R
Sbjct: 621 IGDAGRMRQILTNLTGNAVKFTQRGYVFVNVDCAERT---------------GEEAVIRF 665
Query: 551 --SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608
TG + LEA +DKF Q++ S GG
Sbjct: 666 QIQDTGVGIAVDKLEAI-----FDKFT--------QADTSTTRKF---GG---------- 699
Query: 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVG 668
TG+G+ ++ Q LV LM G+I+ +S G
Sbjct: 700 --TGLGLAITKQ------------------------------LVTLMNGKINVISDVGKG 727
Query: 669 STFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIM 728
S F+ + F K V ++ LP + +VVD+ V V Q L I
Sbjct: 728 SMFTVSIPFPLVKNAV--EMPTRPQIALPNTLINTRVLVVDDNIVNQQVLQEQLESFSIR 785
Query: 729 VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL------DWKP 782
+ + + TA L S P +L+ + G N ++L D K
Sbjct: 786 CDVCND----AETALQRLAESYAAQDPYWLLI-----LDYIMDGMNGEVLGETIRKDQKY 836
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKP-----LRASMIAA--------- 828
N + LILL++ + + + GF+ ++KP LR ++IA
Sbjct: 837 NNTL-----LILLSSTGCQYDAQILQNKGFS-AYLLKPLPVRHLRQTIIALWSDYQNKFA 890
Query: 829 -------CLQQVLSTENKRQAGRGVPNGSSFHQGLLR---GKKILVVDDNGVNRMVAAGA 878
+ +L + +A G N + Q LR G ++L+++DN VNR+VA
Sbjct: 891 QTFIKIDTVPNILPNKLNDKAING-GNSEANTQINLRAPLGTRVLLIEDNDVNRLVAMNM 949
Query: 879 LKKFGATVECAASAKAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
L++ G V A + K A++K L + + +D MD+QMPEMDG EATR IR++E+ N+
Sbjct: 950 LQELGCQVTEAINGKMAVEKILDNDYQYDFVLMDVQMPEMDGIEATRLIRELEN-INQ-- 1006
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
HL I+AMTA + D CLK GMD Y++KP E L + K+
Sbjct: 1007 ----------------HLIIIAMTAGAMKGDADRCLKAGMDDYLAKPITLERLTAVIGKY 1050
Query: 998 F 998
Sbjct: 1051 I 1051
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 23/206 (11%)
Query: 792 LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
+I + K + D+ G D + KP+ + A + + ++ E G+
Sbjct: 1010 IIAMTAGAMKGDADRCLKAGM-DDYLAKPITLERLTAVIGKYIALEQPNSEKLTTKEGNM 1068
Query: 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
L +K+L+V+DN VN +VA L++ G VE + K A+ Q +D MD
Sbjct: 1069 M---LPNQQKVLLVEDNEVNSLVAITMLEQLGYQVESVVNGKEAVAICQEKQ-YDIILMD 1124
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
I+MP MDG EAT++IR E K Q PI+A+TA+
Sbjct: 1125 IRMPVMDGVEATKQIRLHERKETYQT------------------PIIALTANTQPHEVKH 1166
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKF 997
+ GM+ + KPF E L + L K+
Sbjct: 1167 YREVGMNDCLGKPFSIEGLQQVLKKY 1192
>gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 1138
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 197/708 (27%), Positives = 307/708 (43%), Gaps = 179/708 (25%)
Query: 351 LYGAAIHIVKVEDDF-HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
LY A + + E H +++ K +AE K +FLAT+SHEIRTPMNG++GM LLLD
Sbjct: 409 LYAAILRDLTEEKRLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTPMNGVIGMAGLLLD 468
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
T L + QR YA+T + ++L+ +IN++LD +KI+A +LELE F L +++ V + +
Sbjct: 469 TALQADQRGYAETIRDSAESLLVVINDILDFSKIDAGRLELEIGEFELVPLVESVAEILA 528
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529
++ KG++LA FV + +LGD GR RQI+ ++LA +
Sbjct: 529 PRAVAKGLDLASFVPPGLRGTLLGDAGRLRQIL-------------------LNLAGNAV 569
Query: 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589
TD+ T+L A I
Sbjct: 570 KFTDSGSVTIL------------------------------------------LNEEAPI 587
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
N GG V + V DTGIGIP + R+F F Q DSS +R +GGTG+GL+I K
Sbjct: 588 DNDSGDGGG---VRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPARRHGGTGLGLAICK 644
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP----GFKGLKA 705
L ELM G+I S P GS F +V +K+ PP + G +
Sbjct: 645 RLTELMGGRIGLDSHPGTGSVF-----------WVSVPLKRGAGGAHPPTPTGDWAGRRL 693
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
++VD+ PV + L+ GI+ + A+NG T+ E
Sbjct: 694 LLVDDIPVNRDLLTRQLDGFGIV----------TDAAENGETALELLLA----------- 732
Query: 766 ISGEDSGFNAQLLDWKPNG--------HVFKLPKLILLATNISKDECDKAKAGGFA--DT 815
+ + F+A +LD + G + +P+L + ++ + + + +A DT
Sbjct: 733 AARGGTPFDAAILDHRMPGLTGPEVARRIRAIPELAGMRLALASSQRLEGRQRDWAPVDT 792
Query: 816 VIMKPLRASMIAACL-----------QQVLSTENKRQAGRGVPNGSSFHQGLLR------ 858
+ KP+R S + CL Q LS +R G G N ++ G+LR
Sbjct: 793 HLPKPIRFSTLCQCLARLLEPQPEAPQGELSMPPRRDPGSGDENSAA---GILRLPARFA 849
Query: 859 ----------------------------GKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
++LV +DN VN+ + L++ G E +
Sbjct: 850 ITQSDPVANPVANPVAGTAPARQPEAKPRARVLVAEDNPVNQQLTLALLRRAGLNAEAVS 909
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ + A++ + + +D MD+QMP MDG ATRRIR + +
Sbjct: 910 NGEEAVEAVTA-RPYDLVLMDVQMPVMDGLMATRRIRGLSGRVA---------------- 952
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+A+TA+ + CL+ GMD Y+SKP L +A+F
Sbjct: 953 ---RIPIIALTANAMQGDATICLEAGMDDYLSKPINARKLLDAIARFV 997
>gi|410672020|ref|YP_006924391.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171148|gb|AFV25023.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1771
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 193/628 (30%), Positives = 295/628 (46%), Gaps = 106/628 (16%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
RAE A AKS+FLA +SHEIRTPMNG++GM LLLDT+L+ QR Y +T Q G+AL+ +
Sbjct: 1120 RAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNEEQRHYVETVQASGEALLEI 1179
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA KLELE + F+L +LD ++ S K+ +KG+E VP ++ G
Sbjct: 1180 INDILDFSKIEAGKLELEMLDFDLHNVLDSFAAMLSIKAHDKGLEFICAADPDVPAYISG 1239
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DPGR +QI+TNL GN+VKFT G + V+V +++ E LL ++
Sbjct: 1240 DPGRLQQILTNLAGNAVKFTHLGEVVVRV------TRESETNTEVLLRFSVKD------- 1286
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+G+ A+ DK L + + +Q +AS + TG+
Sbjct: 1287 ------TGIGIAE-----DKIGLLFN-QFYQIDASTTRQYSG---------------TGL 1319
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +S Q LV++M G I S GS F F
Sbjct: 1320 GLAISKQ------------------------------LVKMMGGNIGVKSNEGKGSEFWF 1349
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
T F K + + + LP + + +VVD+ + L+ G ++
Sbjct: 1350 TLRFAKRPDGAIKKL-------LPADIQSARILVVDDNATNREILISQLSSWG-----TN 1397
Query: 734 SIKDASS-TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
++ TA L + + +P + + D + G D A+++ K + + K L
Sbjct: 1398 PVEAVDGPTALQTLYRAHEDHKPFHVTI-LDMHMPGMDGLTLARII--KSDDKI-KDTFL 1453
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
I+L T++ + + + + + KPLR S + L +L + K Q N +
Sbjct: 1454 IML-TSLGQWPVMEQLERSYFEAYLTKPLRQSELFDKLSSLLPIDRKIQEQSSNVNENVV 1512
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
Q +IL+ +DN VN+ VA LKK G + A+ AL L+ +D MD+
Sbjct: 1513 PQRHTNNVRILLAEDNIVNQKVAQSMLKKLGFRTDTVANGAEALKALEMI-PYDLVLMDV 1571
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMPEMDG ATR IR GS+V +D +PI+AMTA + +
Sbjct: 1572 QMPEMDGLAATRLIRY-----------SGSAV---LNKD---VPIIAMTAHAMKGDRERF 1614
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKS 1000
++ GMD Y+SKP E L R L K+ +
Sbjct: 1615 IESGMDDYISKPVSMEALKRVLDKWLAT 1642
>gi|410664899|ref|YP_006917270.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
gi|409027256|gb|AFU99540.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
Length = 872
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 202/637 (31%), Positives = 290/637 (45%), Gaps = 115/637 (18%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A++A AKS+FL +SHEIRTPMN I+GM LL DT LS TQ+DY +L+
Sbjct: 339 KSLADSASQAKSEFLTRMSHEIRTPMNAIIGMGHLLSDTRLSRTQKDYLSNIDQAANSLL 398
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+INE+LD AKIEA + LE F+ L D L+
Sbjct: 399 GIINEILDFAKIEAGTIVLEHNHFD----LSDALA------------------------- 429
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
LV + ER ++ V VH+A L G + R
Sbjct: 430 ------------KLVRKAAPAAERKNLEVLVHMAPEV--------PHYLRGDS----LRL 465
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
FN L ++ KF H + + IN+ + V L V D
Sbjct: 466 RQALFNLL---------DNAIKFTHKGEIQ--------INVSVHETNTHYVALKFDVCDR 508
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIG+ +F PFMQAD ST R +GGTG+GL++SK L+ELM G+IS S P GS F
Sbjct: 509 GIGMTREQLAELFTPFMQADGSTRRRFGGTGLGLTVSKHLIELMHGEISVNSSPGQGSQF 568
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
SFTA FG I D F+ LK +VVD+ + L + V
Sbjct: 569 SFTARFGHSV------IGALPVRDKSQKFRHLKTLVVDDNKAARQILTNLATHLDLHVTS 622
Query: 732 SSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLP 790
+S +A S + D+ QP D++L++ + E G +A K + ++P
Sbjct: 623 VASAAEAFSAIELA-----DRDQPFDLVLMD---YQMPEIDGLSASRT-IKEKLSLSQIP 673
Query: 791 KLILLATNISKDEC--DKAKAGGF-ADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
+IL++ +DE DK ++ I KP+ S + + +V R +P
Sbjct: 674 AIILVSA-FHRDEVLGDKQSQTDIPVESFISKPISQSHLFDAIAEVFGDSVFRSDADQLP 732
Query: 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC--F 905
+ L+G ++L+ +DN VN+ VA G L K V+ A + + A+D L S C +
Sbjct: 733 --AEQLAKTLKGVRVLLAEDNVVNQKVAVGILNKMDVAVDIANNGQEAIDLLNSHACNYY 790
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
A MD++MPE+DG++ATRR+R G +D +PI+AMTA +
Sbjct: 791 GAVLMDMEMPEVDGYDATRRMRA-----------------GNHCKD---IPIIAMTAHAM 830
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKFF-KSK 1001
+ CL GMD Y++KP + E LY+ LA F KSK
Sbjct: 831 RGDKERCLAAGMDAYITKPVKPELLYQTLASFIAKSK 867
>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 951
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 199/650 (30%), Positives = 309/650 (47%), Gaps = 117/650 (18%)
Query: 355 AIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS 414
A+ ++E ++Q A+AA AKSQFLA +SHEIRTPMNG+LGM LL+ T L
Sbjct: 255 ALRTRELELTVAELQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRLDE 314
Query: 415 TQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRN 474
QR + + + G+AL+++IN++LD +KIEA KLELE FNL + DV+ L +E +
Sbjct: 315 QQRRFVSSVRRSGEALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHR 374
Query: 475 KGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDA 534
KG+E+A V + VP +LGD R Q++ NLVGN+VKFT++G + + M+K +
Sbjct: 375 KGLEIAALVENDVPPVLLGDQVRVHQVLMNLVGNAVKFTDQGEVIIS------GMLKEEH 428
Query: 535 KDE-TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMM 593
K+E T+L ++ G+ S + G AD NS +
Sbjct: 429 KEEVTVLIRVSDTGIGISDEVKGRIFDGFSQAD--NSTTR-------------------- 466
Query: 594 ASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVE 653
GG TG+G+ ++ Q LVE
Sbjct: 467 -KYGG------------TGLGLTIARQ------------------------------LVE 483
Query: 654 LMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV 713
LM G+I S GSTF FT K + E + ++ L G +A++VD+
Sbjct: 484 LMGGEIGVESEVGRGSTFWFTL---KLHKEASERPRSGEAVSL----AGYRALLVDDNST 536
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSG 772
++ + L+ G M++ + D ++TA + + P D+ +++ + E +G
Sbjct: 537 NLSIMHHELHAWG----MTADMADNAATALGLMRHAARAESPYDLAILD---MLMPEMNG 589
Query: 773 FN-AQLLDWKPNGHVFKLPKLILLATNISK--DECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + P+ +L L+ T++ + DE + KAG I KP+R S + +
Sbjct: 590 IELARAIKANPDLAQTRL----LMVTSVGQYGDEAEAVKAG--IGCYISKPVRQSRLYSA 643
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLR-GKKILVVDDNGVNRMVAAGALKKFGATVEC 888
+ +L V S G +R ++L+V+DN VN+ VA L+ G V
Sbjct: 644 IIDLLGV----GMSSAVQPQQSAEPGPVRLSAEVLLVEDNPVNQDVATAMLECSGCRVSV 699
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A + ALD + + FD FMD QMP MDG+ ATR IRQ E G+S G+
Sbjct: 700 ANNGAEALD-VMTRRRFDLIFMDCQMPVMDGYAATRAIRQCE----------GNSQAGSG 748
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+R I+A+TA + +EC GMD Y++KPF + L L ++
Sbjct: 749 RRT-----IIALTAHAMRGDREECFAAGMDDYLTKPFTQAQLVAVLQRWL 793
>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 201/688 (29%), Positives = 311/688 (45%), Gaps = 125/688 (18%)
Query: 361 VEDDFHKMQEL----------KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+E + H+ +EL K +AEAA+ AKS+FLA +SHEIRTPMN ++GM LLLDT
Sbjct: 646 LEQETHRREELTLKNFALEQAKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTDLLLDT 705
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
DL+ Q+D+ +T + G AL+ +IN++LD +KIE+ KLELE F+LRA ++ +SL +
Sbjct: 706 DLTPQQQDFVETVRSSGDALLTIINDILDFSKIESGKLELEEQPFDLRACVEQAISLLAP 765
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
K+ K IEL + +VP ++GD R RQ++ NL+ N++KFTERG + + V L
Sbjct: 766 KAAQKNIELVYLIQPQVPTQIVGDMTRLRQVLMNLLNNAIKFTERGEVVLSVELG----- 820
Query: 531 KTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASII 590
+G G NS L+ A+
Sbjct: 821 -----------------------------AGDSVKQGENSSPLHPSLVRLRPSLREAAPT 851
Query: 591 NMM--------ASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
+ S + + ++DTGIGI ER+F PF QAD S +R YGGTG
Sbjct: 852 TTLRTSSRQARPSASSESPIQIQFAIKDTGIGITPEKIERLFHPFTQADVSMTRRYGGTG 911
Query: 643 IGLSISKCLVELMRGQISFVSRPQV---------------------GSTFSFTAVFGKCK 681
+GL ISK L ++M G + S+ V GSTF FT
Sbjct: 912 LGLVISKRLSKMMGGTLWVESQGIVGGNPSPRWKSRKSLSSPYSSQGSTFYFTITAQ--- 968
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
+ +++ + P +G + ++VD+ + + + S K+A +
Sbjct: 969 ---VPAVPEAEFSNSPMQLQGKRLLIVDDNLTNCQIISLQAESWEMETYAAKSAKEALAQ 1025
Query: 742 AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
G+ Q DI ++ D + D A+ + + LP +IL T++ +
Sbjct: 1026 LAQGI-------QFDIAIL--DMEMPAMDGITLARQI--RRQSGCQNLPLVIL--TSLGR 1072
Query: 802 DECDKAKAGGFADT----VIMKPLRASMIAACLQQVLSTENKRQAGRGVP--NGSSFHQG 855
+E F D + KP++ S + + +VL + + P + H
Sbjct: 1073 EET----FSDFGDVEFAASLSKPIKQSQLYDVITRVLGNQPSEASITDFPLVDRHLTHPL 1128
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
LR IL+ +D VN+ VA L+K G + + + L LQ +D MD+ MP
Sbjct: 1129 PLR---ILLAEDTIVNQKVALLMLQKIGYSADVVTNGVEVLKALQK-QPYDLVLMDVHMP 1184
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
EMDG E RRI Q E K I+A+TA+ + + CL
Sbjct: 1185 EMDGLETARRICQ-EWKVG------------------FRPHIIAITANAMRGDREVCLAA 1225
Query: 976 GMDGYVSKPFEEENLYRELAKFFKSKPL 1003
GMD Y+SKP + + L + L+K + + L
Sbjct: 1226 GMDDYISKPIQLQKLAQALSKCPRQRSL 1253
>gi|385798974|ref|YP_005835378.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
Length = 921
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 182/635 (28%), Positives = 316/635 (49%), Gaps = 106/635 (16%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++ + +A A AKS+FL+T+SHEIRTPMN I+GM LL +T+LS Q+ Y Q
Sbjct: 388 ELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQETELSEQQQKYINIFQNA 447
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G++L+ LIN++LD +KIEA ++ELEA FNL ++++ + S ++ KG+EL + ++ +
Sbjct: 448 GESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMISLRAFKKGLELPLRIAAE 507
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VPE V+GD R RQI+ NL+GN+VKFTE+G +F+ + + + K+ + + +
Sbjct: 508 VPECVIGDSERIRQILINLLGNAVKFTEKGQVFLDLRID--SEFKSKDQKQVIF------ 559
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ +G G+E A + +D F Q+++S GG
Sbjct: 560 AIKDTGI-------GIEKAKQKQIFDSFT--------QADSS---STRKYGG-------- 593
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S Q LVELM G+I S PQ
Sbjct: 594 ----TGLGLTISKQ------------------------------LVELMGGKIWLKSTPQ 619
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
+GSTF F+ + V + K KS+ F+ K +VVD+ P + + L G
Sbjct: 620 LGSTFYFSLPL----KIVENNFKSQKSQ--TRNFEQYKILVVDDNPTNIFILKEILAERG 673
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
I + + + ++A + + ++ +Q IIL++ + +G + K
Sbjct: 674 IEIGTAQNQQEALTEIAQSI-EAQAPYQ--IILMDN---FMPQKNGLDTS----KKIREK 723
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS-TENKRQ---A 842
F LP L ++ + + E + G + +MKP+R + + L++ + ENK+
Sbjct: 724 FDLPNLQIIILSSAYAEKNLQNREGLINDFMMKPVRKKDLFSLLEKAAAKIENKKANDFK 783
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
+ S K++L+V+DN NR + LKK ++ A + A++K +S
Sbjct: 784 QKAEKEKVSQKDLTTANKELLIVEDNPDNRFLIKAFLKKKNYQLDIAKNGIEAVEKFKS- 842
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
+D MDIQMPEM+G++A IR+ E K N++ + P++A+TA
Sbjct: 843 KLYDLVLMDIQMPEMNGYQAVNEIRKWE-KENKK----------------IKTPVVALTA 885
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ + ++ LK G D +++KP +++ LY+ +AK+
Sbjct: 886 YALDSDKEKALKEGFDDHLTKPLKKDKLYQLIAKY 920
>gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein, partial
[Edwardsiella tarda ATCC 23685]
gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella
tarda ATCC 23685]
Length = 996
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 203/678 (29%), Positives = 309/678 (45%), Gaps = 131/678 (19%)
Query: 346 LVGYILYGAAIHIVKVEDDFHK-------MQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
+V Y G + +V + D + +Q K+ AE A+ AKS FLA +SHE+RTP+N
Sbjct: 196 VVEYQGVGDTLMLVGINRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLN 255
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
ILGMLALLL + L+ Q DYA ++ +AL+ L+N++LD +KIEA K+ELEA FNL
Sbjct: 256 AILGMLALLLKSGLTHRQADYATKSEAAAQALLRLLNDILDYSKIEAGKMELEAEPFNLC 315
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
A+L D+ + + S K +E+ + ++P +++GD R +Q++ NL GN++KFTE+G +
Sbjct: 316 ALLQDLAVILASNSHKKPVEVLFDIDPRLPRWLIGDSLRLQQVLINLGGNALKFTEQGEV 375
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
+ +HL E+ DA++ TL G + G+ + Q SG
Sbjct: 376 VLFIHLIEQ-----DAQNATLHFGVRDTGIGIAPEKQRLIFSGFS--------------- 415
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
Q+ ASI GG TG+G+
Sbjct: 416 -----QAEASITRRF---GG------------TGLGL----------------------- 432
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
SIS+ V +M + S P GS F FT E + S E
Sbjct: 433 -------SISQRFVAMMGSTLELESEPGKGSLFHFTLTLPLAAE------QHSDDEQRRQ 479
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP--- 755
GL ++VD+ P ++ Q LG V D ++ + LT + Q
Sbjct: 480 ALLGLHVLMVDDNPTARSLLQQMALTLGWRV-------DCAAEGEQALTLIAQQQQAGDP 532
Query: 756 -DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDEC---DKAKAGG 811
D++ + D + G D Q L + H +LP L+++ N EC ++ G
Sbjct: 533 YDVLFI--DWLMPGLDGWQTIQRL--RSRLHEKQLPLLVMVTAN--DRECLLQRSSEEQG 586
Query: 812 FADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV-PNGSSFHQG-LLRGKKILVVDDNG 869
D ++KP+ M+ L V +RQ + P H G L G +ILVV+DN
Sbjct: 587 ILDGFLLKPVTPLML---LDSVAGALRERQNLTQIAPPAPVPHSGKPLNGVRILVVEDNQ 643
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQ 928
N+ +A L+ GA V AA + A+D+L+ +P FD MD+QMP MDG AT+ IR
Sbjct: 644 NNQQIARELLEDEGAIVTLAAHGQEAIDRLKATPQGFDLVLMDLQMPVMDGINATQYIRS 703
Query: 929 MESKANEQMMNGGSSVDGTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEE 987
+ LH LPI+AMTA+ + + CL GM+ ++ KPF
Sbjct: 704 HLT---------------------LHTLPIIAMTANAMVSDRQACLAAGMNDHIGKPFNL 742
Query: 988 ENLYRELAKFFKSKPLSG 1005
L + + K + PL+
Sbjct: 743 RELIQTIQKHLLTPPLTA 760
>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
Length = 1325
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 193/640 (30%), Positives = 301/640 (47%), Gaps = 127/640 (19%)
Query: 369 QELKVRAEAADV---AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
QEL+ +AAD AK FLA +SHEIRTPMN ILGM L L+T L +TQR Y
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
K L+ +IN++LD +KIEA KL +E + F+L +LD+V ++ S K++ KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P ++GDP R Q++ NL GN+VKFT++G I + + + + + LL +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ-----LNEQQVMLLFAVKD 765
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ G Q +K L +A Q++ SI GG
Sbjct: 766 TGI---GIAQ----------------EKLNDLFNAFS-QADNSITRQY---GG------- 795
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S Q LVELM GQIS S
Sbjct: 796 -----TGLGLSISKQ------------------------------LVELMGGQISVHSEE 820
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL---KAVVVDEKPVRAAVTQYHL 722
GSTF F+ V G ++++K D+ GL + +VVD+
Sbjct: 821 GKGSTFEFSVVCG---------LQEAKMRDIAQPLYGLANKRVLVVDDND---------- 861
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTS-SEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ I+ + ++++ T NG + SE + +P D++ + + G N L
Sbjct: 862 SARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNM------PGMNGIELLT 915
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ + L T +D ++ D +I+KP+ S + + ++ R
Sbjct: 916 RVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVR 975
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+P S + G+K+L+V+DN VN+ VA G L++ G +V A + + AL+KL+
Sbjct: 976 HKQNELPQHSRPN---FTGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLE 1032
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ FD MD+QMP MDG AT+ IR +G K +LPI+AM
Sbjct: 1033 NAD-FDLVLMDMQMPVMDGITATKHIR----------------TNGRWK----NLPIVAM 1071
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
TA+ + A + CL+ GM+G++SKP E + Y+ L +F KS
Sbjct: 1072 TANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
piezotolerans WP3]
Length = 1771
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 200/669 (29%), Positives = 321/669 (47%), Gaps = 131/669 (19%)
Query: 325 QKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQ 384
Q W LT G L +L A +I ++ +++++ K A+AA AKS
Sbjct: 993 QSGDVMWMDLTLTGLQDKHGTLNSAVLSMA--NITSLKQISNELKQAKDSADAASKAKSD 1050
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMN I+GM L L T+L Q++Y Q K+L+ +IN++LD +KIE
Sbjct: 1051 FLANMSHEIRTPMNAIIGMSQLCLQTELDKKQQNYVQKIDRASKSLLGIINDILDFSKIE 1110
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A KL++E+V F L +L+D+ +FS K+ +K +EL V+ P RQ
Sbjct: 1111 AGKLDIESVSFQLETMLEDLSDMFSVKAADKQLELLFAVA----------PNIPRQ---- 1156
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
L G+ ++ ++ V ++L + TD + E LL ++S LE
Sbjct: 1157 LEGDPLRLSQ-----VLINLMNNAVKFTD-QGEVLL-----------------SISQLER 1193
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
D DA +TL V D GIG+ + ++F
Sbjct: 1194 VD------------DA---------------------ITLRFSVRDNGIGLTEDQRNKLF 1220
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F QAD+ST+R YGGTG+GL+I K LVELM G+I S+ GSTF FT F +
Sbjct: 1221 KSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFTVKFKVADNKL 1280
Query: 685 FEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKN 744
IK + +G++ +V D+ + + L +G V T K+
Sbjct: 1281 ---IKAGQE------LEGMRILVADDNATARDILRTTLESMGFEV----------DTVKS 1321
Query: 745 GLTSSE--DKFQPDIILVEKDCWISGEDSGF--NAQLLDWKPNGHVFKLPKLILLATNIS 800
G + E Q + L++ W+ E +G +A ++ + PK+++++ + +
Sbjct: 1322 GAQAVERCKTTQYPVALID---WLMPEMNGLETSAAII-----ANSETPPKILIVSAHAN 1373
Query: 801 KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGL---L 857
+ D + G A I KP+ AS + L ++S+ K A G +Q L L
Sbjct: 1374 TELTDHIEGSGIA-GYITKPISASRL---LDGIMSSLGKNGAIPVRRTGVEVNQKLLTQL 1429
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
+GK+IL+V+DN +N+ VA L++ G T+ A + + AL+KL + FD MD QMP M
Sbjct: 1430 KGKRILLVEDNEMNQEVATEFLEQVGITLSIADNGQIALEKL-ATQTFDLVLMDCQMPVM 1488
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG++AT+ +R++ ++ LP++AMTA+ + + CL+ GM
Sbjct: 1489 DGYQATQALRKIPELSD--------------------LPVIAMTANAMAGDKEMCLRVGM 1528
Query: 978 DGYVSKPFE 986
+ +++KP E
Sbjct: 1529 NDHIAKPIE 1537
>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
Length = 1343
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 192/637 (30%), Positives = 292/637 (45%), Gaps = 141/637 (22%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +A A AK +FLA +SHEIRTPMN ILGM L L TDL+ QR+Y + GK+L+
Sbjct: 586 KDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDLNDKQRNYVGNIEKAGKSLL 645
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL +E V F +LD++ ++ S K++ K +EL + +P+ +
Sbjct: 646 GIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAKEKELELIFDIDPNLPDDL 705
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVH----LAERTMVKTDAKDETLLNGGTEEG 547
+GDP R QII NL GNSVKFTE G I ++ + E ++ D +D + G EE
Sbjct: 706 VGDPLRLGQIIINLTGNSVKFTESGEIIIRARKVTDVNEIIEIQFDIEDTGI--GMNEEQ 763
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ R F + S Q++ SI GG
Sbjct: 764 LGR----LFQSFS-----------------------QADGSITR---KYGG--------- 784
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
TG+G+ +S + F+ M GG + VE G+
Sbjct: 785 ---TGLGLTIS---KSFVELM----------GG--------RIWVESQPGK--------- 811
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTFSFT G+ + E I ++ + +VVD+ + L+ L +
Sbjct: 812 GSTFSFTIRCGRSNSSIKEQIAKTTI------LNDKRVLVVDDNQASRDIMYALLDNLDL 865
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG--- 784
V S+ ++A ++ S++ GF+ ++DWK G
Sbjct: 866 RVAAVSNGEEAVYEVESADLSND---------------------GFDVVVMDWKMPGING 904
Query: 785 ----------HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR-ASMIAACLQQV 833
+ K+PK+IL + + D ++KP+ +S+ A ++
Sbjct: 905 DEATVKIRELSLNKMPKVILASAYGENSGLINEEVQNVFDASLVKPINPSSLFDALMEAF 964
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
E KR R + H L G KIL+V+DN +N+ VA G L++F T+E A + +
Sbjct: 965 GQLEMKRANSREAETIKTQHVD-LTGIKILLVEDNMINQEVAKGILEQFNPTIEVADNGQ 1023
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
ALD++Q H FD MD+QMP MDG ATR+IR++E+ A
Sbjct: 1024 VALDRVQKEH-FDIVLMDMQMPVMDGLTATRKIREIEALAG------------------- 1063
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPI+AMTA+ + +C GM+ +VSKP + E L
Sbjct: 1064 -LPIVAMTANAMERDIKQCKAAGMNDHVSKPIDIEEL 1099
>gi|390949067|ref|YP_006412826.1| signal transduction histidine kinase [Thiocystis violascens DSM 198]
gi|390425636|gb|AFL72701.1| signal transduction histidine kinase [Thiocystis violascens DSM 198]
Length = 690
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 188/634 (29%), Positives = 296/634 (46%), Gaps = 123/634 (19%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEAA+ AKSQF+A +SHEIRTPMNGILGM L LDT+L+ TQRDY + + L+ ++
Sbjct: 171 AEAANAAKSQFIANMSHEIRTPMNGILGMTELALDTELTPTQRDYLNIVKSSAETLLTIL 230
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD A+++A K+ +EA+ F+L ++ + L ++RNKG+EL + +P LGD
Sbjct: 231 NDILDFARLDAGKMHIEAIPFDLSELVAETLKAIGMRARNKGLELVCDLPADLPRQSLGD 290
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
PGR RQ++ NL N++KFT G I VKV + + D T+ + G
Sbjct: 291 PGRLRQVLMNLCDNAIKFTPTGEIEVKVRSSPNRDPRLDDIQITVRDTGI---------- 340
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
G+ AA ++ F Q++A+I GG TG+G
Sbjct: 341 ------GIPAAKLAEIFEAFS--------QADATITRQF---GG------------TGLG 371
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +SA+ L+ELM GQI SR GS F T
Sbjct: 372 LSISAR------------------------------LLELMGGQIRVESREGQGSAFHLT 401
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
+ I+ S S P ++ +A+VVD+ P+ L G+ + S
Sbjct: 402 LPLAR--------IEPSASSPPPSPWRHKRALVVDDHPINRETLAGWLRHWGLTTLEAGS 453
Query: 735 IKDASSTAKNGLTSSE-------DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
++A + A++G +S D PD+ +E + E G AQ
Sbjct: 454 GQEALALARSGQSSRTPFDLLLLDARMPDMDGLELAARLVAE--GLIAQ----------- 500
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
++++L+ S + + G A T + KP + L ++L +
Sbjct: 501 --GRMVMLSCGGSPGNAQRGQDLGIAAT-LTKPATPRELIETLTRLLDPMVSAASPPPQT 557
Query: 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDA 907
+ +G +IL+V+DN +N+ +A L+++G V A + K A+D L P FD
Sbjct: 558 PPPQDER---QGARILLVEDNPINQKLARKLLERWGHEVTLAENGKIAVD-LFEPSAFDL 613
Query: 908 CFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967
MD+QMP MDG EATRRIR E G+A+ PI+AMTA+V+ +
Sbjct: 614 VLMDMQMPVMDGIEATRRIRDKER--------------GSAR-----TPIVAMTANVMAS 654
Query: 968 TFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
CL+ GMD ++ KP ++L +++F +++
Sbjct: 655 DRARCLEAGMDEHLPKPLRPKHLEEMISRFTEAR 688
>gi|338533502|ref|YP_004666836.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
gi|337259598|gb|AEI65758.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
Length = 929
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 194/656 (29%), Positives = 298/656 (45%), Gaps = 123/656 (18%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + + + D ++ + AEAA+ AKS FLAT+SHEIRTPMN I+GM LLLD L
Sbjct: 226 GRQLGFIAIYHDITDLERARRAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRTL 285
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
+ QRD+ T + +AL+ L+N+VLD +KIEA + E E F+LR ++ VL L + ++
Sbjct: 286 TEEQRDFVATIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRA 345
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
KG++L ++ ++P+ ++GD R RQ++ NLVGN++KFTE G V V
Sbjct: 346 SEKGLDLGCDMAPELPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSV---------- 395
Query: 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
EG +G A+G W
Sbjct: 396 -------------EGTPLAG------------AEGEADW--------------------- 409
Query: 593 MASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV 652
L V+DTG GIP + +F PF Q D+S SR +GGTG+GL+I K LV
Sbjct: 410 ----------ALTFSVQDTGPGIPEDRRAGLFQPFNQLDASVSRRFGGTGLGLAICKRLV 459
Query: 653 ELMRGQISFVSR--PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
E M G I S P G+TF FT + +Q ++ +G + ++VD+
Sbjct: 460 EAMGGTIWVESEGVPGRGTTFRFTLRAQAAPQAYAVQPRQEQAL-----LQGRRVLIVDD 514
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
+ + L G+ ++S +A + + G +F+ +I D + G D
Sbjct: 515 NALFRRLLGRQLQAWGLQPAEAASGMEALAQLQAGA-----RFEAVLI----DHHMPGLD 565
Query: 771 SGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
A + LP L+L++T + + G V+ +PL+ S + L
Sbjct: 566 G--TALAERIREREETRTLP-LVLVSTPGRRGNPPE----GLFAGVLSRPLKDSQLYDAL 618
Query: 831 -----QQVLSTENKRQAGRGVPNGSSFHQGLLRGKK----ILVVDDNGVNRMVAAGALKK 881
Q + RQA P+ + G G IL+V+DN N+ +A L++
Sbjct: 619 MSCFSQHIPQLTAARQA---RPSRAGPFPGERPGDTVPLDILLVEDNATNQKLALLVLER 675
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIR-QMESKANEQMMNG 940
G + A + + AL L +D MD+QMPEMDG EATRRIR ++ K
Sbjct: 676 LGYRADVALNGRQALQALNQKR-YDVVLMDLQMPEMDGLEATRRIREELPPKVQPW---- 730
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
++AMTA+ + + ++C GMD ++ KP E L L +
Sbjct: 731 ----------------VIAMTANAMDSDREQCFAAGMDDFLGKPIRVEALTAALLR 770
>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
Length = 1325
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 192/640 (30%), Positives = 301/640 (47%), Gaps = 127/640 (19%)
Query: 369 QELKVRAEAADV---AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
QEL+ +AAD AK FLA +SHEIRTPMN ILGM L L+T L +TQR Y
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
K L+ +IN++LD +KIEA KL++E + F+L +LD+V ++ S K++ KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P ++GDP R Q++ NL GN+VKFT++G I + + + + + LL +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ-----LNEQQVMLLFAVKD 765
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ G Q +K L +A Q++ SI GG
Sbjct: 766 TGI---GIAQ----------------EKLSDLFNAFS-QADNSITRQY---GG------- 795
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S Q LVELM GQIS S
Sbjct: 796 -----TGLGLSISKQ------------------------------LVELMGGQISVHSEE 820
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL---KAVVVDEKPVRAAVTQYHL 722
GSTF F+ V G ++++K D+ GL + +VVD+
Sbjct: 821 GKGSTFEFSVVCG---------LQEAKMRDIAQPLHGLANKRVLVVDDND---------- 861
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTS-SEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ I+ + ++++ T NG + SE + +P D++ + + G N L
Sbjct: 862 SARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNM------PGMNGIELLT 915
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ + L T +D ++ D +I+KP+ S + + ++ R
Sbjct: 916 RVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVR 975
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+P S + G+K+L+V+DN VN+ VA G L++ G +V A + + AL+KL+
Sbjct: 976 HKQNELPQHSRPN---FTGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLE 1032
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ FD MD+QMP MDG AT+ IR +G K +LPI+AM
Sbjct: 1033 NAD-FDLVLMDMQMPVMDGITATKYIR----------------TNGRWK----NLPIVAM 1071
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
TA+ + + CL+ GM+G++SKP E + Y+ L +F KS
Sbjct: 1072 TANAMATDIERCLQVGMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|390949595|ref|YP_006413354.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426164|gb|AFL73229.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1840
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 195/637 (30%), Positives = 301/637 (47%), Gaps = 109/637 (17%)
Query: 365 FHKMQEL-KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
H+ EL + AE A AKS+FLA +SHEIRTPMN I+GM L L T+L QR+Y +
Sbjct: 1088 LHEALELARDVAEKATRAKSEFLANMSHEIRTPMNAIIGMSHLALQTELDHKQRNYIEKV 1147
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
AL+ +IN++LD +KIEA L++E++ F L ++D++ SL K+ +G+EL +
Sbjct: 1148 HRSAGALLGIINDILDFSKIEAGMLDMESIDFRLEDVMDNLASLLGLKAEERGVEL---M 1204
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
D PE + T L+G+ ++ G I L+N G
Sbjct: 1205 FDLRPE-----------VPTALIGDPLRL---GQI--------------------LINLG 1230
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED-V 602
N+ KF + I+ +A+ SED V
Sbjct: 1231 -------------------------NNAVKFT--------EPGGEIVVSVAALETSEDSV 1257
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
L V DTGIG+ ER+F F QAD ST+R YGGTG+GL+ISK L E+M G+I
Sbjct: 1258 LLHFTVRDTGIGMSPEHLERLFQSFSQADMSTTRKYGGTGLGLAISKKLTEMMGGEIRVE 1317
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
S GSTF FTA F + V + ++K++ L P L ++VD+ + L
Sbjct: 1318 SALGKGSTFVFTARFAPQRGEVSQ--PRAKTDALHP----LHVLIVDDNATSREILSEIL 1371
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
G V + + TA L S+ + D++L+ D + G D + + +
Sbjct: 1372 AAFGFRVDQAGT----GPTAIALLEQSDAQAPYDLVLM--DWKMPGMDGVETIRAI--QG 1423
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-NKRQ 841
N + +P +I++ T ++E +A AG + KP+ S + + + E R
Sbjct: 1424 NARITHVPTMIMV-TAYGREEARQAAAGLDLAGFLTKPVTPSTLLDTIMVAIGREVASRA 1482
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
G +S LRG +L+V+DN +N+ +A L G +VE A + AL+ L +
Sbjct: 1483 RATGRQEEASEAIARLRGAHVLLVEDNEINQELALELLTMNGLSVEVANHGQEALEMLAA 1542
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D MD QMP MDG+EATR IR+ +A Q LP++AMT
Sbjct: 1543 -ASYDGVLMDCQMPVMDGYEATREIRR---QARYQ-----------------SLPVIAMT 1581
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
A+V+ ++ L+ GM+ ++ KP ++ +AK+
Sbjct: 1582 ANVMTGDREKALESGMNDHIGKPINVREMFATMAKWI 1618
>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM603]
gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM603]
Length = 1325
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 192/640 (30%), Positives = 301/640 (47%), Gaps = 127/640 (19%)
Query: 369 QELKVRAEAADV---AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
QEL+ +AAD AK FLA +SHEIRTPMN ILGM L L+T L +TQR Y
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
K L+ +IN++LD +KIEA KL +E + F+L +LD+V ++ S K++ KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P ++GDP R Q++ NL GN+VKFT++G I + + + + + LL +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ-----INEQQVMLLFAVKD 765
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ G Q +K L +A Q++ SI GG
Sbjct: 766 TGI---GIAQ----------------EKLNDLFNAFS-QADNSITRQY---GG------- 795
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S Q LVELM GQIS S
Sbjct: 796 -----TGLGLSISKQ------------------------------LVELMGGQISVHSEE 820
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL---KAVVVDEKPVRAAVTQYHL 722
GSTF F+ V G ++++K D+ GL + +VVD+
Sbjct: 821 GKGSTFEFSVVCG---------LQEAKMRDIAQPLYGLANKRVLVVDDND---------- 861
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTS-SEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ I+ + ++++ T NG + SE + +P D++ + + G N L
Sbjct: 862 SARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNM------PGMNGIELLT 915
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ + L T +D ++ D +I+KP+ S + + ++ R
Sbjct: 916 RVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVR 975
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+P + + G+K+L+V+DN VN+ VA G L++ G +V A + + AL+KL+
Sbjct: 976 HKQNELPLHTRPN---FAGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLE 1032
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ FD MD+QMP MDG AT+ IR +G K +LPI+AM
Sbjct: 1033 NAD-FDLVLMDMQMPVMDGITATKHIR----------------TNGRWK----NLPIVAM 1071
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
TA+ + A + CL+ GM+G++SKP E + Y+ L +F KS
Sbjct: 1072 TANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|389879451|ref|YP_006381681.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
gi|388530841|gb|AFK56036.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
Length = 1577
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 197/666 (29%), Positives = 294/666 (44%), Gaps = 127/666 (19%)
Query: 349 YILYGAAIHIVKVED---DFHKMQEL-KVR--AEAADVAKSQFLATVSHEIRTPMNGILG 402
+ L+GA +V V D H EL + R AE A KS FLA +SHEIRTPMN ++G
Sbjct: 801 FRLHGAWHGVVFVRDITPRRHAADELARARDLAEQASRLKSDFLANMSHEIRTPMNAVIG 860
Query: 403 MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILD 462
M L L T+L+ QRDY Q Q L+ +IN++LD +KIE +LELEAV F L +L
Sbjct: 861 MTHLALKTELTPRQRDYLQKIQGAADGLLGIINDILDFSKIENGRLELEAVDFRLDDVLG 920
Query: 463 DVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
++ ++ ++ K +E V+ VP +LGDP R Q++ NL GN+VKFTE G + V V
Sbjct: 921 NLATVIGHRAEEKRLEFIFDVAPDVPGTLLGDPLRLGQVLINLAGNAVKFTETGEVVVSV 980
Query: 523 HLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEG 582
L V +DA L + G+ + D+ HL E
Sbjct: 981 RL-----VISDADGHRLRFAVRDTGIGMTP-------------------DQMSHLF--EP 1014
Query: 583 F-QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGT 641
F Q++ SI GG TG+G+ +S
Sbjct: 1015 FTQADGSITRRY---GG------------TGLGLSIS----------------------- 1036
Query: 642 GIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFK 701
+ LV +M G+++ S P GS F+F A FG+ + + P +
Sbjct: 1037 -------RRLVRMMDGEVTVESTPGAGSVFTFDAAFGRSRARWSRITAR-------PDLR 1082
Query: 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE 761
GL +V+D+ P+ V L + V S + G ED + LV
Sbjct: 1083 GLHVLVIDDNPLARQVLTGMLEGMAFRVVAVPSGEAGLEALARG-REVEDPYS----LVL 1137
Query: 762 KDCWI-SGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKP 820
D + +G D A L+ +P ++++ T +D+ ++ V+ KP
Sbjct: 1138 LDWRLGAGLDGLATAGLIAQAAAEAGAPVPPIVMI-TAFGRDDLRQSAEAAGIRAVLGKP 1196
Query: 821 LRASMIAACLQQVL----STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAA 876
AS + + V + + A + +P+ LRG ++L+V+DN +N+ VA
Sbjct: 1197 FNASTLFDTIMHVFDDGGGDDVRAAATQALPD--------LRGGRVLLVEDNALNQQVAL 1248
Query: 877 GALKKFGATVECAASAKAALDKLQS---PHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
L+ G V+ +AALD+L + P D MD+QMP MDG+EATR IR A
Sbjct: 1249 ELLEAAGLVVDVETDGRAALDRLVAGPRPPVHDLVLMDLQMPVMDGYEATRAIRATPGLA 1308
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
N LPI+AMTA + CL+ GM+ V+KP + E L
Sbjct: 1309 N--------------------LPIVAMTAHALAEERQRCLEAGMNDCVTKPVDPERLMAV 1348
Query: 994 LAKFFK 999
+A F +
Sbjct: 1349 VAGFVR 1354
>gi|410629876|ref|ZP_11340571.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola arctica BSs20135]
gi|410150499|dbj|GAC17438.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola arctica BSs20135]
Length = 1065
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 189/625 (30%), Positives = 292/625 (46%), Gaps = 120/625 (19%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K AE A+ AKS+FLA +SHEIRTPMNG++GM +LLLDT L+ Q ++A+ +
Sbjct: 536 LKKAKDSAEQANQAKSEFLANMSHEIRTPMNGVIGMTSLLLDTPLNPEQHNFAKIVKSSA 595
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
K+L+++IN++LD +K+EA LE+E++ F++ ++++ + ++ KG+EL +
Sbjct: 596 KSLLSIINDILDFSKVEAGMLEMESIDFDMDLLMNEFGRSIAVRAHEKGLELICPANPVQ 655
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+ DPGR RQI+ NLVGN++KFTE+G + V + + +TDA+ + L+ T+ G
Sbjct: 656 HKCYSADPGRIRQILNNLVGNAIKFTEQGEVAVYYKVQQ----QTDARTKVLIE-VTDTG 710
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ S Q ADG + KH GG
Sbjct: 711 IGLSAEQQAGLFERFSQADGSTTR---KH--------------------GG--------- 738
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
TG+G+ +S Q LVELM G+I S
Sbjct: 739 ---TGLGLAISKQ------------------------------LVELMGGEIGIKSTHGK 765
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGF-----KGLKAVVVDEKPVRAAVTQYHL 722
GSTF FT + SE P F +G K +VVD+ + + L
Sbjct: 766 GSTFWFT-------------LDLENSEHTAPTFSVADLRGQKILVVDDNLTNRTLLGHLL 812
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
+ + S K A + DK I ++ D + D AQL
Sbjct: 813 TNWQVEHTLVESAKQALECLTQAVA---DKQAYSIAII--DMQMPDMDG---AQLGTAIK 864
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS-TENKRQ 841
N L++L + + + K KA GF D + KP+ +++ L QV T N
Sbjct: 865 NDTTITNTHLVMLTSQGQRGDTQKLKAVGF-DAYLNKPVDQAILYNTLIQVAKITTNDSP 923
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ SS H + +ILVV+DN +N+MVA L+++G + AA+ + AL L++
Sbjct: 924 I---LTEYSSRHTPQFKA-RILVVEDNVINQMVAQSMLEQYGIQSDVAANGEEALKALEN 979
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D FMD QMP MDGFEATR IR ESK + +PI+AMT
Sbjct: 980 -FPYDLVFMDCQMPVMDGFEATRSIRSPESKVRNKA-----------------IPIIAMT 1021
Query: 962 ADVIHATFDECLKCGMDGYVSKPFE 986
A+ + ++C+ GM+ ++SKP E
Sbjct: 1022 ANTMQGDREKCIAAGMNDFISKPVE 1046
>gi|359782103|ref|ZP_09285325.1| two-component system sensor-response regulator hybrid protein
[Pseudomonas psychrotolerans L19]
gi|359369896|gb|EHK70465.1| two-component system sensor-response regulator hybrid protein
[Pseudomonas psychrotolerans L19]
Length = 1620
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 200/675 (29%), Positives = 302/675 (44%), Gaps = 164/675 (24%)
Query: 353 GAAIHIVKVEDDF-------HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
G + +V + D H+++E + RA+ A AKS FLA +SHEIRTPMN +LGML
Sbjct: 862 GRVLRVVGINRDITEQLELEHRLREERTRADLASQAKSSFLANMSHEIRTPMNAVLGMLQ 921
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
LL T L + Q DY AQ ++L+ L+N+VLD +KIEA KL+L+ F+L +L ++
Sbjct: 922 LLQRTALDARQGDYLTKAQQAARSLLGLLNDVLDYSKIEAGKLQLDVHPFSLEQVLRNLG 981
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525
+ S S K +E+ + +P T L+G+S++ + + ++LA
Sbjct: 982 VVLSGNSGEKNVEINYHLDAGLP--------------TALIGDSLRLQQ-----ILINLA 1022
Query: 526 ERTMVKTDAKDETLLNGGTEEGVCRSGTGQ-FNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
+ T+A GQ ++ L ADG+
Sbjct: 1023 GNALKFTEA-------------------GQVLVSVRQLSRADGQ---------------- 1047
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
+ L V+DTGIGI + QE++F F QA++S SR +GGTG+G
Sbjct: 1048 -----------------LRLEFSVQDTGIGISPAQQEQLFQGFTQAEASISRRFGGTGLG 1090
Query: 645 LSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLK 704
L+I K LVELM GQ+ S VGS F F A + L P + +
Sbjct: 1091 LAICKRLVELMDGQLQVESELGVGSRFWFDAALA---------VDSQGEAQLAPVRR--R 1139
Query: 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC 764
++ D+ + V L LG V + +S + A + ++ + QP
Sbjct: 1140 VLLADDNTLVGEVLVETLAALGWQVDLVTS----GAAALARVAQAQQQAQP--------- 1186
Query: 765 WISGEDSGFNAQLLDWK-PNG------------HVFKLPKLILLATNISKDECDKAKAGG 811
+ A L+DW+ P+G PK+I+L T +D +A+
Sbjct: 1187 --------YEAVLMDWRMPDGDGLLAARQLRERQADNRPKVIML-TGFGRDFLTEAQQSD 1237
Query: 812 FA--DTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG-------SSFHQGLLRGKKI 862
A D + KP+ + I +++ L E +P G H+ L G ++
Sbjct: 1238 DAPFDDYLTKPVTPAQIVEVVERALGAE--------IPAGVHAAAVVDESHR--LAGLRL 1287
Query: 863 LVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEA 922
LVV+DN +NR VAA L GA VE A ++++ S D MD+QMP++DG EA
Sbjct: 1288 LVVEDNALNRQVAAELLLAQGAQVELAEGGLQGVERVLSGGPLDVVIMDMQMPDIDGLEA 1347
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
TRRIR A+++ LPILAMTA+ H D CL GMD ++
Sbjct: 1348 TRRIR-----ADQRFRT---------------LPILAMTANASHTDRDACLAAGMDDHIG 1387
Query: 983 KPFEEENLYRELAKF 997
KP + E L L +
Sbjct: 1388 KPIDLELLVARLRRL 1402
>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
Length = 1325
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 192/640 (30%), Positives = 301/640 (47%), Gaps = 127/640 (19%)
Query: 369 QELKVRAEAADV---AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
QEL+ +AAD AK FLA +SHEIRTPMN ILGM L L+T L +TQR Y
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
K L+ +IN++LD +KIEA KL +E + F+L +LD+V ++ S K++ KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P ++GDP R Q++ NL GN+VKFT++G I + + + + + LL +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ-----LNEQQVMLLFAVKD 765
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ G Q +K L +A Q++ SI GG
Sbjct: 766 TGI---GIAQ----------------EKLNDLFNAFS-QADNSITRQY---GG------- 795
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S Q LVELM GQIS S
Sbjct: 796 -----TGLGLSISKQ------------------------------LVELMGGQISVHSEE 820
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL---KAVVVDEKPVRAAVTQYHL 722
GSTF F+ V G ++++K D+ GL + +VVD+
Sbjct: 821 GKGSTFEFSVVCG---------LQEAKMRDIAQPLYGLANKRVLVVDDND---------- 861
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTS-SEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ I+ + ++++ T NG + SE + +P D++ + + G N L
Sbjct: 862 SARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNM------PGMNGIELLT 915
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ + L T +D ++ D +I+KP+ S + + ++ R
Sbjct: 916 RVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVR 975
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+P + + G+K+L+V+DN VN+ VA G L++ G +V A + + AL+KL+
Sbjct: 976 HKQNELPLHTRPN---FAGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLE 1032
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ FD MD+QMP MDG AT+ IR +G K +LPI+AM
Sbjct: 1033 NAD-FDLVLMDMQMPVMDGITATKHIR----------------TNGRWK----NLPIVAM 1071
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
TA+ + A + CL+ GM+G++SKP E + Y+ L +F KS
Sbjct: 1072 TANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 812
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 191/639 (29%), Positives = 293/639 (45%), Gaps = 124/639 (19%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLA +SHEIRTPMNG++GM LLLDT L QR +A++ + + L+ +IN++LD +
Sbjct: 283 KSEFLANMSHEIRTPMNGVIGMTGLLLDTKLDPEQRQFAESVRNSAENLMTVINDILDFS 342
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KL E + F+L ++ L + +E+++ KGIEL ++ +VP ++ GDPGR RQI
Sbjct: 343 KIEAGKLLFEELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQI 402
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+TNL+GN++KFTE G + + L T + + T+ G+ S Q
Sbjct: 403 LTNLLGNAIKFTEHGEVVLSTTLERETATHAIVRFDV-----TDTGIGISRDVQARLFQS 457
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
E AD + GG TG+G+ +S Q
Sbjct: 458 FEQADSSTT-----------------------RRYGG------------TGLGLAISKQ- 481
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
LV +M G+I S VGSTF FT F K +
Sbjct: 482 -----------------------------LVAMMHGEIGVQSEAGVGSTFWFTVEFQK-Q 511
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
+ +++ + + L+ +VVD+ + ++ + + ++ +A
Sbjct: 512 TGAPKRVRRVQRD-----LTSLRVLVVDDNATNRKILRHQIFAWNMQKGSAAGGHEALRL 566
Query: 742 AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
++ + E DI L+ D + D A+ + P L L L +++
Sbjct: 567 MRDAAAAGEPY---DIALL--DMQMPEMDGLTLARAIKDDPALAPTHLIILTSLGHRLTR 621
Query: 802 DECDKAKAGGFADTVIMKPLRAS------MIAACLQQVLSTENKRQAGRGVPNGSSFHQ- 854
DE +A G D ++KP++ S M A + QV T + R PN + +
Sbjct: 622 DEL---QAAGI-DAYLVKPVKQSRLFDTLMDAIGVAQVF-TRSYETPARSKPNAADTPEP 676
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
+LR LV +DN VN+ VAA LKK +V+ A+ L+ L S +D FMD QM
Sbjct: 677 PILRA---LVAEDNQVNQTVAAAQLKKLRCSVDVVANGLEVLEAL-SRAPYDVIFMDCQM 732
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH-----LP--ILAMTADVIHA 967
PEMDG+EATR IRQ E +D +H P I+AMTA +H
Sbjct: 733 PEMDGYEATRAIRQRE-------------------QDRIHPCHWKAPAYIIAMTAHAMHG 773
Query: 968 TFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK-PLSG 1005
++CL GMD YVSKP L + ++ ++ P+SG
Sbjct: 774 DREKCLAVGMDDYVSKPMRTAELQAAIERWRATRAPVSG 812
>gi|256828313|ref|YP_003157041.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577489|gb|ACU88625.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 940
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 201/675 (29%), Positives = 317/675 (46%), Gaps = 140/675 (20%)
Query: 345 LLVGYILYGAAIHIVKVEDDFHKMQELKVR---AEAADVAKSQFLATVSHEIRTPMNGIL 401
+ G++ G A+ I+ + +Q + V+ AEA AKS FLA++SHEIRTPM IL
Sbjct: 388 IWAGFVCEGVAMSILLA----YTVQTMAVQRQSAEAMAQAKSTFLASMSHEIRTPMTAIL 443
Query: 402 GMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461
G L L L R Y + + L+ +IN++LD AKIEA K+EL+A F + A+L
Sbjct: 444 GFLNLSLQMRPEGQLRQYLLKIRTSAQHLMGIINDILDLAKIEADKMELDADPFEVEAVL 503
Query: 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK 521
D + ++ G EL V V + ++GD R +QI+ NL GN++KFT
Sbjct: 504 RDTADILVARAFENGNELVVSVQPGLQHRLVGDSLRLKQILVNLGGNAIKFT-------- 555
Query: 522 VHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAE 581
R+GT + L+ L A DG +S D
Sbjct: 556 ----------------------------RNGTVR---LAVLRAEDGPSSEDA-------- 576
Query: 582 GFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGT 641
VTL V DTGIGI + R+F F+QAD+ST+R YGGT
Sbjct: 577 --------------------VTLRFQVSDTGIGIDAAVLPRLFESFVQADTSTARVYGGT 616
Query: 642 GIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFK 701
G+GL+IS+ LV LM G+I+ S+ GSTF FTAVF +++ + P
Sbjct: 617 GLGLNISRRLVHLMGGEIAVRSQLGQGSTFQFTAVF------------KTEGSAMEPAMT 664
Query: 702 ----GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDI 757
GLK +V ++ P ++ + + + + S+ A S A+ ++ + F D+
Sbjct: 665 ADQGGLKVLVAEDNP----ASREAMEEVSACLGLKSTF--AGSAAQALQLAAAEDF--DL 716
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDEC---DKAKAGGFAD 814
IL++ W + +G A L + + + ++P + L T+ ++ E D A+ G +
Sbjct: 717 ILLD---WDLPDTTGPEAVTL-LRSSQRLVRVP--VALMTSPARPEVESIDPARLG--VE 768
Query: 815 TVIMKPLRASMIAACLQQVLSTENK--RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNR 872
++ KP AS + +++V+ E+ R+ G G+ + RG ++L+ +DN VN+
Sbjct: 769 DILAKPFTASSVRDMVRRVIHNEDSPAREIG-GIAAEEQRSRERARGLRVLLAEDNRVNQ 827
Query: 873 MVAAGALKKFGATVECAASAKAALDK-----LQSPHCFDACFMDIQMPEMDGFEATRRIR 927
+ + L + G VE A + A+ + L P D MD+ MPEMDG+EATR IR
Sbjct: 828 ELISLILSQAGVLVEVAGNGIEAVLRVMDTSLPEP---DVVLMDVHMPEMDGYEATRNIR 884
Query: 928 QMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEE 987
+ R LPI+A+T +V+ CL+ GM+ ++ KP +
Sbjct: 885 R--------------------DRRFQALPIIALTTNVMAGDRQRCLEAGMNDHLGKPVDT 924
Query: 988 ENLYRELAKFFKSKP 1002
L+ L K + P
Sbjct: 925 GALFAALVKCKTANP 939
>gi|428315640|ref|YP_007113522.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428239320|gb|AFZ05106.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1532
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 187/629 (29%), Positives = 287/629 (45%), Gaps = 130/629 (20%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+A AA AKS+FLAT+SHEIRTPMNG++GM LLLDT L+ QRD+ +T + G AL+ L
Sbjct: 679 QALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQRDFVETIRSSGDALLTL 738
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIE+ KL+LE F++R +++ L L + K+ K +E+ + VP +G
Sbjct: 739 INDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKKLEVGYLIDRTVPATAIG 798
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
D R RQI+ NL+ N+VKFT+ G + V V + ++ ++K+ L+ G
Sbjct: 799 DSTRLRQILINLLSNAVKFTDAGEVVVSVTAKKISVPAANSKEPPLIAG----------- 847
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+A N E + V+DTGI
Sbjct: 848 -------------------------------------EPLAINPAYE---IQFAVKDTGI 867
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI------SFVSRP-- 665
GIP +R+F F Q DSSTSR YGGTG+GL+ISK L E+M G++ + +P
Sbjct: 868 GIPSDRMDRLFKSFSQVDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVESMGNLAGKPPA 927
Query: 666 --------------------------------------QVGSTFSFTAVFGKCKEYVFED 687
VGSTF F+ + C + +
Sbjct: 928 DFKSAVLDLGWAESCEIAEKNGYAKSVLSNKPIGQNTKSVGSTFYFSTIVSGCNSSLPVN 987
Query: 688 IKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLT 747
+ S+ P G + ++VD+ + G M + ++ A + L
Sbjct: 988 LSNSQ-----PELAGKRVLIVDDNATNRRILTLQAQSWG----MVARASASARLALDWLA 1038
Query: 748 SSE--DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECD 805
+ E D D+ + E D AQ+ + P+ KLP ++L T+I + E +
Sbjct: 1039 AKEMFDLAVLDMQMPEMDGL------ALAAQIRQY-PDCE--KLPLVML--TSIGRQEIN 1087
Query: 806 K-AKAGGFADTVIMKPLRASMIAACL-----QQVLSTENKRQAGRGVPNGSSFHQGLLRG 859
A FA + KP++ S + L +Q + +R +G + + L
Sbjct: 1088 SPAMEMDFA-AFLNKPIKQSQLYNVLINIFGEQTTEFKGQRTSGPFLQTIPVLAENL--P 1144
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+IL+ DD+ VN+ VA L++ G + A + L+ L+ +D MD+QMPEMDG
Sbjct: 1145 LRILLADDHLVNQKVALQILQRMGYRADVAGNGIEVLEALRR-QPYDVVLMDVQMPEMDG 1203
Query: 920 FEATRRIR-QMESKANEQMMNGGSSVDGT 947
E TRRIR Q + + G S V T
Sbjct: 1204 LETTRRIREQFSADLTLENHTGESEVSAT 1232
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 802 DECDKAKAGGFADTVIM-KPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK 860
+ C+ A+ G+A +V+ KP+ + + ST +P S Q L GK
Sbjct: 940 ESCEIAEKNGYAKSVLSNKPIGQNTKSVGSTFYFST-IVSGCNSSLPVNLSNSQPELAGK 998
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++L+VDDN NR + + +G +ASA+ ALD L + FD +D+QMPEMDG
Sbjct: 999 RVLIVDDNATNRRILTLQAQSWGMVARASASARLALDWLAAKEMFDLAVLDMQMPEMDGL 1058
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+IRQ D LP++ +T+ ++ +
Sbjct: 1059 ALAAQIRQYP--------------------DCEKLPLVMLTSIGRQEINSPAMEMDFAAF 1098
Query: 981 VSKPFEEENLYRELAKFF 998
++KP ++ LY L F
Sbjct: 1099 LNKPIKQSQLYNVLINIF 1116
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 921 EATRRIRQMES-KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E+ R ++E+ K+ E+ N S ++ R I+AMTA+ + +EC+ GMD
Sbjct: 1269 ESHNRKSKIENRKSTEESHNRKSKIEN---RKSTRPWIVAMTANAMQGDREECMAAGMDD 1325
Query: 980 YVSKPFEEENLYREL 994
Y+SKP E L R L
Sbjct: 1326 YLSKPIAIEQLVRAL 1340
>gi|383764048|ref|YP_005443030.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384316|dbj|BAM01133.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 731
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 197/639 (30%), Positives = 292/639 (45%), Gaps = 117/639 (18%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E + + L V AEAA AKS+FLA +SHEIRTP+N ++GM LLLD+ L++ QR++
Sbjct: 185 QLEQALEQARRLAVEAEAASRAKSEFLANISHEIRTPLNAVIGMTTLLLDSALTAEQREF 244
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+T +I G+AL++L+N+VLD +KIEA +LELE + F+ +++ +SLF+ ++ KGIEL
Sbjct: 245 AETIRISGEALLSLLNDVLDFSKIEAGRLELERIPFDAMKCVEEAVSLFARQASAKGIEL 304
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+ PE VL D ++G+ V+ + + ++L VK + E +
Sbjct: 305 VLL-----PENVLPD---------RVMGDPVRLRQ-----ILINLVNNA-VKFTHEGEIV 344
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
++ E WD S A + S
Sbjct: 345 VSVWVE-------------------------WDA--------AMSSPAEAME-------S 364
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TL V DTG+GIP + R+F F Q DSST+R YGG+G+GL+I++ L LM G +
Sbjct: 365 VPCTLRFSVRDTGVGIPAERRGRLFQAFSQVDSSTTRKYGGSGLGLAIARNLCRLMGGDM 424
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S P VGSTF FT E + + S P F G +V+D+
Sbjct: 425 WVESEPGVGSTFFFTV--------RSEAVAVTPSYQESP-FAGRILLVLDDNRAARKAFM 475
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ RLG+ +S ++A + L PD+ LV+ D +S + + L
Sbjct: 476 FWAERLGMKAVAVASEEEAFQILEEAL--------PDLALVDGD--LSPPSAPLSMHL-- 523
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA--------CLQ 831
G + I ++E A D I LR + A L
Sbjct: 524 ---RGRNIPAIFTTIQQNGIQQNETQHQNAAD-NDLRIEIWLRKPVFFASLLEQVRRALG 579
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
Q+ S KR R + + G R IL+V+DN VN+ VA L++ G T + A +
Sbjct: 580 QLPSVPEKR---RSIASRLDATLGQRRPLSILLVEDNPVNQKVALMMLRRLGYTPDLATN 636
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A+ Q +D MD+ MPEMDGFEA +RIR++ +R
Sbjct: 637 GAEAVAA-QQRREYDLVLMDLHMPEMDGFEAAQRIRRL-----------------PLRRQ 678
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
L I AMTA V A + GMDG + KP E L
Sbjct: 679 PL---IYAMTAAVTEADLAGVREAGMDGVIPKPVRVEQL 714
>gi|326490519|dbj|BAJ84923.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 256
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/258 (51%), Positives = 162/258 (62%), Gaps = 10/258 (3%)
Query: 743 KNGLT-SSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
+NG + +S + Q ++LVE D W D + + K NG P++ILLA S
Sbjct: 1 RNGTSLTSMPRKQLSMLLVESDSWDLKRDIPLRTRFSEMKQNGCESVFPQVILLALADS- 59
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
DK KA D+VI KPL+AS +AACL Q L + +G LL GK
Sbjct: 60 ---DKMKAEYAIDSVITKPLKASTLAACLFQSLGISITQANNEKKHHGPDSLYALLLGKN 116
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVVDDN VN VAAG LKK+GA VEC S K AL+ LQ+PH FD C MDIQMPEMDGFE
Sbjct: 117 ILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALELLQAPHKFDLCLMDIQMPEMDGFE 176
Query: 922 ATRRIRQMESKANEQMMNGGSSVDG-TAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
ATR+IR +E+KA+ NG +S G TAK+ HLP+LAMTADVI AT +EC K GMDGY
Sbjct: 177 ATRQIRAIEAKAH----NGDNSEPGSTAKKTGWHLPVLAMTADVIQATHEECTKNGMDGY 232
Query: 981 VSKPFEEENLYRELAKFF 998
VSKPFEE+ L++ + KF
Sbjct: 233 VSKPFEEKQLFKAVQKFL 250
>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio brasiliensis LMG 20546]
gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio brasiliensis LMG 20546]
Length = 1197
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 302/632 (47%), Gaps = 112/632 (17%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A +A+ AKS FLA +SHEIRTPMN I+GM L L TDL+ QR+Y ++ +L+ LI
Sbjct: 474 ANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLLGLI 533
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++E V F+L +LD++ +L ++ +G+EL + + VP
Sbjct: 534 NDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVP------ 587
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
T LVG+ ++ G I ++LA + TE+G +
Sbjct: 588 --------TTLVGDPLRL---GQIL--INLANNAV------------KFTEKGEIKIS-- 620
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
I ++ NG +D+ L VED+GIG
Sbjct: 621 -----------------------------------IRVVERNG--DDLVLQFSVEDSGIG 643
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ ++F F QADSST+R YGGTG+GL+ISK L +LM G I S GS FSF+
Sbjct: 644 MTPEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIEVQSEAGKGSCFSFS 703
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
EDI +P LK +VVD+ + + L L V +S+
Sbjct: 704 IATRVSHALKQEDIS------VPVELNKLKVLVVDDNASARIIVEDILKSLQFDVFTASN 757
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+ DA S + + S+ Q D+++ D + G+D +L+ N PKL++
Sbjct: 758 VDDAYSELQQAIGSNS---QYDLLI--SDWKMPGKDGIDLVELV--SQNIAQSAQPKLLM 810
Query: 795 LATNISKDECDKA--KAGGFADTVIMKPLRASMI---AACLQQVLSTENKRQAGRGVPNG 849
L T +++E +A G + +++ KP+ AS + L V S+ R
Sbjct: 811 L-TAYAREELSEAMENRGLESPSILDKPVTASHLFDAIVTLYGVSSSRLSRSEAEEQHQL 869
Query: 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909
++ Q L G ++L+V+DN +N+ +A L+ V A + + A+D L + FD
Sbjct: 870 ANVQQ--LAGAQLLLVEDNEINQELAIELLEGQQMHVTVAENGQVAID-LYKANEFDGIL 926
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MD QMP MDG++AT+ IRQ + N+Q +PI+AMTA+V+
Sbjct: 927 MDCQMPVMDGYKATQYIRQ---QLNDQ-----------------QIPIIAMTANVMERDK 966
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ + GM+ ++KP + +++ LA++ K
Sbjct: 967 VKAAQAGMNDIIAKPIDVGSMFSTLAQWVTPK 998
>gi|381167829|ref|ZP_09877034.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
gi|380682905|emb|CCG41846.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
Length = 1087
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 186/653 (28%), Positives = 301/653 (46%), Gaps = 120/653 (18%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G A H + + D ++Q+ + +AEA ++AKS+FLAT+SHEIRTPMNG++GM LLLDT L
Sbjct: 429 GVATHYIGLSSDITELQQARQQAEAGNLAKSEFLATMSHEIRTPMNGVIGMTGLLLDTKL 488
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
+ QR +AQT + ++L+++IN++LD +K+EA +L+ E F +R +++ V+ + S +
Sbjct: 489 TEEQRIFAQTIRESSESLLSIINDILDLSKMEASRLDFEETSFEIRPLVEGVIDILSPRV 548
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
R + I+L + GDPGR RQ++ NLVGN+VKFTE G I + V +A
Sbjct: 549 RGRDIDLTCLIPAGARGVFRGDPGRLRQVLLNLVGNAVKFTESGTISIVVAVA------- 601
Query: 533 DAKD-ETLLNGG-TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASII 590
D +D T+L T+ G+ G+ A +D F Q++AS
Sbjct: 602 DGRDGRTILTATVTDTGI------------GIPDAAKPRMFDTFT--------QADAS-- 639
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
MA G + L +C K
Sbjct: 640 --MARRFGGSGLGLAIC-----------------------------------------KR 656
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
+V+ M G+I F SR GSTF F + E E ++ G+K +VVD+
Sbjct: 657 IVDWMGGEIGFESREGKGSTFWFKVPILRSDETPSEAAGGAE-------LDGVKVLVVDD 709
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGE 769
+ + L G V S A +N T+ QP D ++++ + E
Sbjct: 710 TQTNRDILRQQLEGWGARVTAFDSAAIAIEAIRNANTAG----QPFDAVVLDH---LMPE 762
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNIS--KDECDKAKAGGFADTVIMKPLRASMIA 827
SG + +L + + LP ++ + +++ + ++ + D V++KP+R S +
Sbjct: 763 ISGLDLTVL-LRSDPLTATLPLVMATSADLATLQPRLERLR----IDEVLVKPVRQSALL 817
Query: 828 ACLQQVLSTENKRQAGRGVPNGS-SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ + L VP LR ILV +DN +N+ VA G L K G
Sbjct: 818 NAMLRCLGRPPIDTPQTIVPAADFPIATTPLR---ILVAEDNAINQQVAVGLLAKLGHRA 874
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
+ A A++++ + +D MD+QMP +DG ATR IR + +
Sbjct: 875 DVADDGAEAVERVAAGE-YDLVMMDMQMPHIDGLGATRLIRALPAP-------------- 919
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+ + I+AMTA+ + D CL GMD Y+SKP + + L +A++ K
Sbjct: 920 -----KAKVTIIAMTANAMSDDRDTCLAAGMDDYISKPIDLKRLTDMIARWDK 967
>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 693
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 189/639 (29%), Positives = 287/639 (44%), Gaps = 140/639 (21%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ E K RAEAA+VAKS+FLATVSHE+RTP+NGILGM LLLDT L QR Y + + G
Sbjct: 157 LDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSG 216
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL+ L++ +LD ++IEA +L+L A F++ A+++ V+ L + ++++KG+E+A+ ++D +
Sbjct: 217 KALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDL 276
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+GD R RQI+ NL GN++KFT+ G + V
Sbjct: 277 AALRVGDADRVRQILVNLAGNAIKFTQAGGVGVS-------------------------- 310
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ RSG GQ E + L V
Sbjct: 311 LARSGEGQ-------------------------------------------GEGLVLTV- 326
Query: 608 VEDTGIGIPLSAQERV---FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
EDTG GIP +ER+ F F Q D S S + GTG+GL+I++ LVE M G I S
Sbjct: 327 -EDTGPGIP---EERIPILFEEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARST 380
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
GSTF + + + P K ++V P +A L+R
Sbjct: 381 VGRGSTFRVVLPLPAAEGAMSPET---------PSLAPRKVLIVAASPYQAPFLARRLSR 431
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
G ++ + +++ A + L+ V D I+ G +A +
Sbjct: 432 SG----AAAVVVNSAEAALDALSG-----------VAFDALIADRSLG-DAAVRRLAAEA 475
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA----------------SMIAA 828
+ ++L + + E A GF D+ ++KP+RA S A
Sbjct: 476 ARCGVRCSLILLSPFDRREFGAPNAAGF-DSYLIKPVRARSLFDRLLEPRPAPARSPADA 534
Query: 829 CLQQVLSTENKRQAG--RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ S RQ + P + Q RG+++L+ +DN +N ++A AL++ GA V
Sbjct: 535 TAKTGTSQPGPRQPAPVKTTPGKTGSIQTAARGRRVLLAEDNPINALLATKALERLGAQV 594
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
A AL + FD +DI+MP +DG E RRIR E++ G S
Sbjct: 595 IHARDGLEALAAAEGQGPFDLALIDIRMPGLDGLETARRIRAREAE------TGASP--- 645
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
LHL +A+TA+ D G DG++ KP
Sbjct: 646 ------LHL--VALTANTGREDVDAASAAGFDGFLPKPL 676
>gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 1620
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 189/632 (29%), Positives = 289/632 (45%), Gaps = 119/632 (18%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+AE A AKS FLA +SHEIRTPMN I+G+ L L T+L+ QR Y + + L+ +
Sbjct: 732 QAEEATKAKSDFLANMSHEIRTPMNAIMGLSHLALQTELTDKQRKYIEKVYRSAENLLGI 791
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
+N++LD +KIEA KL++E V F+L + +++ S+ K+ G+ E +
Sbjct: 792 LNDILDFSKIEAGKLDMEHVAFHLEDVFENMASMVGLKAEEAGL-----------ELLFD 840
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
PG + LVG+ ++ G I + + VK + E +++ E +GT
Sbjct: 841 LPGN----MPTLVGDPLRL---GQILINLG---NNAVKFTPRGEVVVSARVIE---ETGT 887
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
G L V+DTGI
Sbjct: 888 G-----------------------------------------------AKLHFSVKDTGI 900
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ ++++F F QAD+ST+R YGG G+GL+I K L ELM G I S P +GS F F
Sbjct: 901 GLSEEQRKKLFQHFSQADASTTRKYGGAGLGLAICKKLTELMGGDIWLESEPGMGSVFHF 960
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKG-LKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
TA FGK D +S D + G L +VVD+ + L R G
Sbjct: 961 TARFGKQAAPAAPD----RSRD----WAGELHVLVVDDNSAARDIFLGMLTRFGFQA--- 1009
Query: 733 SSIKDASSTAKNGLTSSEDKFQP---DIILVEKDCWISGEDSGFN-AQLLDWKPNGHVFK 788
+A+++ K L E+K Q D+ +++ W+ + SG Q L P +
Sbjct: 1010 ----EAAASGKEALALLEEKGQERPYDMAIID---WVLPDMSGRELCQALRDAPK--IDP 1060
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
PK+IL AT+ + +TV+ KP S + + + +R +G
Sbjct: 1061 KPKIILAATHGRPTLKALTEELDTENTVLHKPFMPSSLFNAIMDAMGRLPERGSGHAKAK 1120
Query: 849 GSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
+ LRG K+L+V+DN +N+ VA L + G + A + + A++ LQ FD
Sbjct: 1121 RKEIAATVSKLRGAKVLLVEDNAINQEVARELLARNGVRTKVADNGRTAMEMLQKER-FD 1179
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
MD QMP MDG+EATR+IR M GG LPI+AMTA+V+
Sbjct: 1180 GVLMDCQMPVMDGYEATRKIRAM----------GGFE----------DLPIIAMTANVMA 1219
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
++CL CGM+ ++ KP + L + L ++
Sbjct: 1220 GDKEKCLACGMNAHIGKPINFKELSQTLGRWI 1251
>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
Length = 1721
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/416 (36%), Positives = 219/416 (52%), Gaps = 58/416 (13%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E H+ + RA AA AKS+FLA +SHEIRTPMNGILGM +LLL+T+L+ QR +
Sbjct: 1262 EIEQSLHQATQ---RARAATQAKSEFLANMSHEIRTPMNGILGMTSLLLETELTGEQRRF 1318
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+ + G AL+ +IN++LD +KIEA KLELE V F+L +L+ + S ++ KGIEL
Sbjct: 1319 AEIVRNNGDALLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALSVQAHKKGIEL 1378
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+ P V GDPGR RQI+ NL+GN++KFTE+G +FV++ E T A+
Sbjct: 1379 IYDIEPGTPSHVRGDPGRLRQILANLMGNAIKFTEKGEVFVQIKTGEAVAADTVAE---- 1434
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
TE G A +S + + S+ +
Sbjct: 1435 ----TEAG--------------------------------APDVKSTEPEVAVSVSDNDA 1458
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
VTL+ V+DTGIGI E +F F QADSS +R++GGTG+GL+IS+ L ++ G++
Sbjct: 1459 PAVTLLFSVKDTGIGISPEKIETIFESFTQADSSITRNFGGTGLGLTISRKLAGMLGGKL 1518
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S P GSTF+FTA F +E V + E P + +VVD+ A +
Sbjct: 1519 WVTSNPGAGSTFAFTARFEAPEEAVV-----ALEEHPPLDLDRARILVVDDN----ATNR 1569
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKN--GLTSSEDKFQPDIILVEKDCWISGEDSGF 773
LNR + +S+ +A S + + D+ P L DC + G D GF
Sbjct: 1570 LILNR--TLTGYGASVTEADSAIRGLFEFRRAADEGNP-FRLALIDCRMPGMD-GF 1621
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP----HCFDACFMDIQMPE 916
+ILVVDDN NR++ L +GA+V A SA L + + + F +D +MP
Sbjct: 1558 RILVVDDNATNRLILNRTLTGYGASVTEADSAIRGLFEFRRAADEGNPFRLALIDCRMPG 1617
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDGF R+ + + GT + I+ +T+D ++C G
Sbjct: 1618 MDGFGLAERMHKAPVRT------------GTTE-------IMMLTSDNRSGDLEKCRNLG 1658
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ Y+ KP +++ + KP
Sbjct: 1659 ISRYLIKPISRKDILDASPPSWAVKP 1684
>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
ATCC 12472]
gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
violaceum ATCC 12472]
Length = 902
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 193/643 (30%), Positives = 293/643 (45%), Gaps = 126/643 (19%)
Query: 366 HKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
K+QE K++ AE+A AKS FLA +SHEIRTPMN I+G+ L L T L QRDY
Sbjct: 147 RKLQEGKLKQAMEEAESATRAKSDFLANMSHEIRTPMNAIIGLAHLALRTGLDPKQRDYL 206
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
Q GK L+ +IN++LD +KIEA KL+LE F+L +LD++ +L EK+ KG+EL
Sbjct: 207 QKIHNSGKHLLGIINDILDFSKIEAGKLDLENAEFDLERVLDNLAALLGEKAEAKGLELI 266
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK-----VHLAERTMVKTDAK 535
F +G PG R +L+G+ ++ G I + V ER V A+
Sbjct: 267 ---------FDIG-PGLDR----SLIGDPLRL---GQILINYANNAVKFTERGEVTVRAR 309
Query: 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS 595
CR G
Sbjct: 310 -------------CREERG----------------------------------------- 315
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+ + L V DTGIG+ + ++F F QAD+STSR YGGTG+GL+IS+ L E+M
Sbjct: 316 ----DSLLLHFEVSDTGIGLSAEQKAKLFQSFQQADTSTSRKYGGTGLGLAISRKLAEMM 371
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVR 714
G++ S P GSTF FTA GK + + E LP G + +A+VVD+
Sbjct: 372 GGEVGVDSEPGKGSTFWFTARLGKGEPH---------PERLPGVGMRNRRALVVDDSRAA 422
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774
+ L G+ ++ + +D + + D + +++ ++ W G
Sbjct: 423 REILAEQLR--GMTFRVDEA-EDGEQALERVEQAERDGDRYEVVFLD---WRMPRMDGIE 476
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
A + H L ++ T ++E + + ++KP+ AS++ ++
Sbjct: 477 AARRLMR---HDAALRPHRVMVTGYGREEVFRLAEDAGIEMTLIKPVSASVLFDSTMRLF 533
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
E A R P LRG ++L+ +DN +N+ VA L V A++ +
Sbjct: 534 GGEAAAGA-RAAPAADEIDLSPLRGMRVLLAEDNELNQQVATELLSAADIEVTVASNGEE 592
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
AL L FD MD+QMP MDG EATRR+R++ S KR
Sbjct: 593 AL-SLAEAQPFDLALMDMQMPVMDGLEATRRLRRLAS---------------WGKR---- 632
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
PILAMTA+ + + CL+ GM+ +V+KP + + L+ L ++
Sbjct: 633 -PILAMTANAMSGDRERCLEAGMNDHVTKPIDPDKLFAALKRW 674
>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
Length = 1318
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 186/631 (29%), Positives = 294/631 (46%), Gaps = 117/631 (18%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++ K A+A AK +FLA +SHEIRTPMNGILGM+ L L+T+L Q Y
Sbjct: 592 ELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTELDPAQHKYLTRINES 651
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
K L+ +IN++LD +KIE KL +E + F+L + D++ ++ S K++ K IE + + +
Sbjct: 652 AKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQEKKIEFLLDIDPQ 711
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP ++GDP R Q++ NL GN+VKFTE+G + V V + T +D L +
Sbjct: 712 VPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIELLT-----ERDVVLHFSVKDT 766
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ G++ +K HL DA Q+++SI GG
Sbjct: 767 GI------------GIDK-------EKIAHLFDAFS-QADSSITREF---GG-------- 795
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S Q LVELM GQ+S S
Sbjct: 796 ----TGLGLSISKQ------------------------------LVELMGGQLSVSSTLG 821
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTF+FT G +E DI + + G G +A+VVD+ + LN +
Sbjct: 822 AGSTFAFTITCG-LQEAKMRDISKPVA-----GLAGKRALVVDDNDSARNILVTLLNAMH 875
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA-QLLDWKPNGH 785
K S+ +A +N Q D++ V+ + G N +LL N
Sbjct: 876 FDAKAVSNGFEALDEIRNS--------QFDLLFVDWNM------PGLNGIELLQTAQNEQ 921
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
+ + K L+ + D+A + D++I+KP+ S + L ++ + R
Sbjct: 922 LLEHSKNFLVTAYGREISLDQA-SSKLVDSLIVKPVNPSNL---LDAIMDSFGIEHVTRN 977
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
P + + + G+ IL+V+DN VN+ VA G LK V A + + A++ L+ H
Sbjct: 978 TP-ANQLEKPVFGGQTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAINMLEQ-HPV 1035
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MD+QMP +DG AT +IR+ D LPI+AMTA+ +
Sbjct: 1036 DLVLMDMQMPVLDGVSATEQIRR--------------------NPDWQQLPIIAMTANAM 1075
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ D C+ GM+ +++KP NLY+ L++
Sbjct: 1076 QSDVDRCIAAGMNSHLAKPINVRNLYQTLSQ 1106
>gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1245
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 191/657 (29%), Positives = 294/657 (44%), Gaps = 107/657 (16%)
Query: 349 YILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL 408
Y +YG I ++ K AE A AKS FLA +SHEIRTPMN I+GM L L
Sbjct: 399 YRVYGVTQDITTRRAAEREILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAL 458
Query: 409 DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLF 468
T+LS Q+DY AL+ +IN++LD +KIEA KL++E + F L L+ + +L
Sbjct: 459 QTELSRKQQDYINKIHNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLI 518
Query: 469 SEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+ K+R KG+EL + DP + L+G+ ++ G I V
Sbjct: 519 AVKAREKGLEL----------LIAMDPA----VPDGLIGDDLRL---GQILVN------- 554
Query: 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNAS 588
L+N V + TG+
Sbjct: 555 ----------LVNNA----VKFTDTGEI-------------------------------- 568
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++ + +V L + D+GIG+ + ++F F QAD+ST+R YGGTG+GL+IS
Sbjct: 569 VVRVKQVEANDREVMLQFSISDSGIGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTIS 628
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L E+M G+I S P VGSTF FTA FG +K L +GL+ ++V
Sbjct: 629 KKLTEMMHGKIWVESTPGVGSTFLFTARFGLSTHPAKSKLK------LTGDLQGLRVLIV 682
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D+ +A ++ +L I + + + ++S A + +E P LV D + G
Sbjct: 683 DD----SATSREIFEQLAISLGFDAHLAASASEALLAIYRAEAADTP-YQLVYTDWKMPG 737
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D +L + P I++ T +DE + D + KP S +
Sbjct: 738 MD---GVELTHRLKTATDLQHPPKIIMVTAYDRDEMLRRLGSNTVDGFLTKPATCSSLME 794
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
V E + G G +IL+V+DN +N+ VA L+ V
Sbjct: 795 AAMLVFGLEARTDLENGGELLGLEELQSRAGARILLVEDNEINQQVATELLEMAHLEVAV 854
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A++ + ++ +++ FD MD+QMP MDG+ A R IRQ +A Q
Sbjct: 855 ASNGQIGVEMVRA-EPFDLVLMDMQMPVMDGYTAARTIRQ---EARFQT----------- 899
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF--KSKPL 1003
LPILAMTA+ + ++CL GM+ +V+KP + + L+ LAK+ + +PL
Sbjct: 900 ------LPILAMTANAMAGDREKCLAAGMNDHVAKPIDPKELFTALAKWIEPRQQPL 950
>gi|406903298|gb|EKD45424.1| hypothetical protein ACD_69C00300G0001, partial [uncultured
bacterium]
Length = 644
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 288/618 (46%), Gaps = 116/618 (18%)
Query: 392 EIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451
EIRTP+NG++GM +LLLDT LS QR+Y +T ++ G+AL+ +IN++LD +KIE+ +E+E
Sbjct: 1 EIRTPLNGVIGMTSLLLDTILSMQQREYVETIRVSGEALLLVINDILDFSKIESEHMEIE 60
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
V F++ A+++D L +F+ ++ NKGI ++ VPE+ LVG+S++
Sbjct: 61 KVDFSIYALIEDSLDIFTVQAHNKGIAFGAYIDPAVPEW--------------LVGDSMR 106
Query: 512 FTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571
+ +LN V + +G+ +
Sbjct: 107 IRQ------------------------VLNNILSNAVKFTESGEISI------------- 129
Query: 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQAD 631
N +I +N + +TL++ V+DTGIGI A R+F PFMQ D
Sbjct: 130 --------------NVRLIKTAITN--DKKLTLLIEVKDTGIGITPEAYMRLFEPFMQGD 173
Query: 632 SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQS 691
+S SR YGGTG+GL+ISK LVELM G I+ S GS F FT + + I +
Sbjct: 174 TSISRKYGGTGLGLAISKRLVELMGGTINVESELGRGSKFWFTIELAESTHAITPKIDYA 233
Query: 692 KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSED 751
L G + + VD+ + + Q + ++ + +A S K + D
Sbjct: 234 ----LIKQIHGARILCVDDNVINREIIQRQTKNWHMRCDLAENAAEALSMLKKA-AADRD 288
Query: 752 KFQPDIILVEKDCWISGEDSGFN-AQLLDWKPNGHVFKLPKLIL--LATNISKDECDKAK 808
+ +L D + G SGF Q++ P + +P +IL L + S +E K
Sbjct: 289 PY----VLALVDYMMPGM-SGFELIQIMRQLP--EIKNVPVIILSSLGASFSINEL---K 338
Query: 809 AGGFADTVIMKPLRASMIAACLQQVL-----STENKRQAGRGVPNGSSFHQGLLRGKKIL 863
G + + + KPL S + + VL + + VP H +IL
Sbjct: 339 RLGISLS-LSKPLHLSRLYESITTVLIKMRGKVDTLVSPTQIVPVQPKKHY------RIL 391
Query: 864 VVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT 923
+ +DN N+ VA L++ G + ++ A+ L++ +D MD QMP MDG+ AT
Sbjct: 392 LAEDNITNKQVALWILERLGYHADSVSNGYEAIQTLKNT-SYDLILMDCQMPGMDGYTAT 450
Query: 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
IR+ME GG + H+PI+AMTA + ++CL+ GMD Y+SK
Sbjct: 451 AEIRKME---------GGQ---------QPHIPIIAMTAHALKGDREKCLQVGMDDYISK 492
Query: 984 PFEEENLYRELAKFFKSK 1001
P L L+++ K
Sbjct: 493 PINFTVLTEMLSRWLDEK 510
>gi|374813019|ref|ZP_09716756.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-1]
Length = 734
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 187/646 (28%), Positives = 296/646 (45%), Gaps = 133/646 (20%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D ++ + K AE A AKS FLA +SHEIRTPMN I+GM T+++ + ++ +
Sbjct: 197 DVEELAQAKEAAERASSAKSDFLANMSHEIRTPMNAIIGM------TNIAKSSKELEKKD 250
Query: 424 QICGKA------LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
GK L+ +IN++LD +KIEA K +L F+ +L V ++ K K
Sbjct: 251 YCLGKIENASTHLLGVINDILDMSKIEANKFDLSYTEFDFEKMLIRVTNVVEFKIEEKSQ 310
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKD 536
+ + VPEF++ D R Q+I NL+ N++KFT E+G+I V +H K D KD
Sbjct: 311 NFFIHSDEDVPEFIVSDEQRLFQVIANLLSNAIKFTPEKGNITVDIH-------KIDEKD 363
Query: 537 ETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASN 596
G+C I + S+
Sbjct: 364 ----------GIC---------------------------------------TIQIEVSD 374
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
G IG+ + ++F F+QADSS SR +GGTG+GL+ISK +VE+M
Sbjct: 375 TG--------------IGVTEEQKAQLFNSFVQADSSISRKFGGTGLGLAISKRIVEMMD 420
Query: 657 GQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
G+I S G+TF F + KE +K+ E + +VVD+
Sbjct: 421 GRIWVESEYGKGATFKFYIQAERGKESKKSAVKKGLLE-----IDKINVLVVDDS---ED 472
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSS---EDKFQPDIILVEKDCWISGEDSGF 773
+ +Y L+ M+ I ++G ++ E+ + D+ V+ W SG
Sbjct: 473 LREYFLS-------MARKIGFHCDVVEDGQAATKLIEEGRRYDMFFVD---WRMPGVSGI 522
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
K G+ K +++ A ++ E ++AKA G + I KPL S++ C Q
Sbjct: 523 ELTRTIRKTVGN--KAIVIMISAVEWARIE-EEAKASG-VNGFIPKPLFPSLLVDCFNQY 578
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
LS + A H L GK+IL+ +D +NR + L+ +G T+ CA +
Sbjct: 579 LSPDTG-GAAEETEQSEDLH---LEGKRILLAEDVEINREIVIAILEPYGLTINCAENGV 634
Query: 894 AALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQME-SKANEQMMNGGSSVDGTAKRD 951
+ + ++ P+ +D FMD+ MPEMDG+EATRRIR ++ +A E
Sbjct: 635 EVVKEFEAHPYNYDIIFMDVHMPEMDGYEATRRIRALDIPRARE---------------- 678
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+PI+AMTA+V ++C+ GM+ +V KP + E + L K+
Sbjct: 679 ---IPIIAMTANVFAEDVEKCMAAGMNDHVGKPLDMEQVMTALKKY 721
>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955337|ref|ZP_12598357.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342813393|gb|EGU48364.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 1319
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 185/635 (29%), Positives = 300/635 (47%), Gaps = 121/635 (19%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++ K A+A AK +FLA +SHEIRTPMNGILGM+ L L+T+L Q Y
Sbjct: 592 ELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTELDPAQHKYLTRINES 651
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
K L+ +IN++LD +KIE KL +E + F+L + D++ ++ S K++ K IE + + +
Sbjct: 652 AKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQEKKIEFLLDIEPQ 711
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP ++GDP R Q++ NL GN+VKFTE+G + V V + T +D L +
Sbjct: 712 VPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIEMLT-----ERDVVLHFSVKDT 766
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ G++ +K HL DA Q+++SI GG
Sbjct: 767 GI------------GIDK-------EKIAHLFDAFS-QADSSITREF---GG-------- 795
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S Q LVELM GQ+S S
Sbjct: 796 ----TGLGLSISKQ------------------------------LVELMGGQLSVSSTLG 821
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTF+FT G +E DI + + G G +A+VVD+ +
Sbjct: 822 AGSTFAFTITCG-LQEAKMRDISKPIA-----GLAGKRALVVDDND----------SARN 865
Query: 727 IMVKMSSSIKDASSTAKNGLTSSED--KFQPDIILVEKDCWISGEDSGFNA-QLLDWKPN 783
I+V + +++ + NG + ++ + Q D+ V+ + G N +LL +
Sbjct: 866 ILVTLLNAMHFDAKAVSNGFEALDEIRRDQFDLFFVDWNM------PGLNGIELLQTAQS 919
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
+ + K L+ + D+A + D++I+KP+ S + L ++ +
Sbjct: 920 ERLLQHSKNFLVTAYGREISLDQANS-KLVDSLIVKPVNPSNL---LDAIMDSFGIEHVT 975
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
R P + F + + G+ IL+V+DN VN+ VA G LK V A + + A+D L+ H
Sbjct: 976 RDNPT-NQFEKPVFDGQTILLVEDNEVNQEVAIGLLKGTNVNVLTAENGQQAMDMLEQ-H 1033
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
D MD+QMP +DG AT +IR+ N Q LPI+AMTA+
Sbjct: 1034 PVDLVLMDMQMPVLDGVSATEQIRR---NPNWQ-----------------QLPIIAMTAN 1073
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ + + C+ GM+ +++KP NLY+ L+++
Sbjct: 1074 AMQSDVERCITAGMNSHLAKPINVHNLYKTLSQYL 1108
>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1202
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 195/649 (30%), Positives = 307/649 (47%), Gaps = 124/649 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+VED+ K + AE+A+ +KS+FLA +SHEIRTPMNG++GM+ LL +T+L+ Q+ +
Sbjct: 523 RVEDELKKAM---LDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTELTPEQQSH 579
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+TA+ ++L+ +IN++LD +KIEA KLELE + F+L +++DV +L +++ ++ +EL
Sbjct: 580 MRTARNSAESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRVDSEKLEL 639
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+P V GDP R RQ++ NLVGN+VKFT G + V++ T+ + DA T+
Sbjct: 640 LHNAPADLPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRM-----TVERQDADTVTV 694
Query: 540 LNGGTEEGVCRSGTGQFNTLSGL-EAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
L + G+ G+ EA R F+ A+G + GG
Sbjct: 695 LTEVRDTGI------------GIDEAVRPR----LFRMFTQADGSTTR--------RFGG 730
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
TG+G+ +S Q LVELM G+
Sbjct: 731 ------------TGLGLAISKQ------------------------------LVELMGGE 748
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG---FKGLKAVVVDEKPVRA 715
+ F S GSTF F F +K++ + G +GL+A+VVD+
Sbjct: 749 VGFSSVMGQGSTFWFRITFPIV----------AKAQAVAGGVDSLQGLRALVVDDNATNR 798
Query: 716 AVTQYHLNRLGIMVKMSSSIKDA----SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
+ +L+ G+ +S K A + AK GL+ F I+ D + G D
Sbjct: 799 NLLGRYLSNWGVTHLECASGKQALEKIADAAKFGLS-----FDLAIL----DLLMPGMDG 849
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
A+ + K +++LL + ++ E + +AG A + KP+R + + A L
Sbjct: 850 LALAERITQMVQDKQIKPLRMVLLTSAHARRE-ELEQAGVVA--ALSKPIRQAQLRALLG 906
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
QV+ E R G V S + +L+V+D+ +N+ VA G L G VE A
Sbjct: 907 QVMRGE--RVVGGLVERISQNNMSATFDAAVLLVEDHPINQQVARGMLAGLGCRVEIAND 964
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+ +L + H +D MDIQMP MDG+E T IRQME
Sbjct: 965 GHEGV-RLFARHRYDLVLMDIQMPGMDGYETTDAIRQMERSERWP--------------- 1008
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
PI+A+TA+ + D CL MD Y+SKP + L ++K+ K+
Sbjct: 1009 --RTPIVALTANAMEQDRDRCLAADMDDYLSKPISLDRLKAAMSKWLKT 1055
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 25/154 (16%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPH----CFDACFMD 911
L+G + LVVDDN NR + L +G T +ECA S K AL+K+ FD +D
Sbjct: 783 LQGLRALVVDDNATNRNLLGRYLSNWGVTHLECA-SGKQALEKIADAAKFGLSFDLAILD 841
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+ MP MDG RI QM +D+ P+ + HA +E
Sbjct: 842 LLMPGMDGLALAERITQM-------------------VQDKQIKPLRMVLLTSAHARREE 882
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
+ G+ +SKP + L L + + + + G
Sbjct: 883 LEQAGVVAALSKPIRQAQLRALLGQVMRGERVVG 916
>gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1153
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 193/658 (29%), Positives = 304/658 (46%), Gaps = 128/658 (19%)
Query: 356 IHIVKVEDDFHKMQELKVRAEA-ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS 414
I + E F ++ E + +A A+ KS F+A +SHEIRTPMN I+G+ +L L TDL+S
Sbjct: 361 ILVDTTERKFREIAEREKQAAVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTS 420
Query: 415 TQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRN 474
QRDY + ++L+ +IN++LD +KIEA +L +EA+ F+L L+++ + S K+
Sbjct: 421 RQRDYLTKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVKADE 480
Query: 475 KGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDA 534
KG++ V+ D G+ + T L+G+ +
Sbjct: 481 KGLD------------VIFDIGK--DVPTGLIGDPTRL---------------------- 504
Query: 535 KDETLLNGGTEEGVCRSGTGQ--FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
++ LLN T+ V + GQ EAAD + S
Sbjct: 505 -NQVLLNL-TDNAVKFTEQGQVIIKVRREREAADVQGS---------------------- 540
Query: 593 MASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV 652
TL V DTGIG+ +F F QAD+S +R +GGTG+GL+ISK +V
Sbjct: 541 ----------TLRFSVIDTGIGMRAQQAPYLFQSFTQADASITRKHGGTGLGLTISKHIV 590
Query: 653 ELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEK 711
+LM G+IS S VGSTF+FTA FG Q+K + P P +VVD+
Sbjct: 591 DLMGGEISVSSEFGVGSTFTFTAHFGLH--------SQAKKKTAPIPFLSAHNVLVVDDN 642
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
V + +L G V+ +++ +A S + D +P LV D + G D
Sbjct: 643 RAAREVMKENLEGFGCTVRTAAAGAEAVSKVEKA-----DAMEP-FHLVLMDWNMPGMDG 696
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
A+++ + P +++ T +E + D ++KP+ S++ +
Sbjct: 697 LEAARMIK---SSRQIAHPPAVMIVTAYGNEELIQQSNQAGNDGFLVKPVTPSVLYNSIL 753
Query: 832 QVLSTENKRQAGRGVPNGSSFHQ------GL--LRGKKILVVDDNGVNRMVAAGALKKFG 883
V+ G P + + GL +RG ILVV+DN +N+ + L+ G
Sbjct: 754 TVMQ-------GAHSPGPETQEREPLEIYGLDGIRGAHILVVEDNEINQQIVVELLELEG 806
Query: 884 ATVECAASAKAALD---KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
+V A KAALD L+ DA MD+QM EMDG+ AT+ IR+M +
Sbjct: 807 FSVSVAEHGKAALDIIHALEPNEKIDAILMDVQMSEMDGYTATQEIRKMPAPL------- 859
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA + + D+CL GMD +V KP +++ +++ L K+
Sbjct: 860 ------------CLIPIIAMTAHAMPSERDKCLASGMDDFVPKPIDQKGMFQTLVKWI 905
>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain-containing protein [Marinomonas
mediterranea MMB-1]
gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
MMB-1]
Length = 2241
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 189/646 (29%), Positives = 303/646 (46%), Gaps = 115/646 (17%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+V D ++ KV AE A+ AKS FLAT+SHEIRTPMN I+G+ L L T L+ Q+D+
Sbjct: 1493 RVTDRTEELNVAKVLAEEANRAKSLFLATMSHEIRTPMNAIIGLSRLTLKTPLNLDQKDF 1552
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ L+ +IN++LD +KIEA K+ LE F L++++ ++++ + K++ K +EL
Sbjct: 1553 MDKILESAEGLLGIINDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAKEKALEL 1612
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
V + VP +LGDP R +QI+TNLV N++KFTE+G + ++V L +
Sbjct: 1613 HVDIDSDVPALLLGDPLRLQQILTNLVSNAIKFTEKGFVGIRVSLEQ------------- 1659
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
T+EG + ++ GL R + F Q++ASI GG
Sbjct: 1660 ----TQEGTPQVRFDVTDSGVGLTQEHQRELFKPFT--------QADASITRKY---GG- 1703
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TG+G L+I + LVELM+GQI
Sbjct: 1704 -----------TGLG------------------------------LAICRQLVELMKGQI 1722
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GSTF F +E ++ K D F ++ +VVD+ +
Sbjct: 1723 WVRSHLGKGSTFGFRIPVHSYQE---DNDLAYKHLD----FSKVRVLVVDDSNIARRAIV 1775
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
Y L +G+ + +A + G +S + D++L+E+ +++G D + +
Sbjct: 1776 YMLKEIGVQCDDVGAPIEALECIREGNGASTNY---DVLLMER--YLAGVDCLDTIRKI- 1829
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
K L +I+ ++ S +E D V+ KP+ S + L V N+
Sbjct: 1830 -KKESSNKNLTSIIV--SSFSDEEKQLLSVDRDIDDVLDKPVDLSSLRQAL--VEHYPNR 1884
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+ +LR K++L+V+DN +N V G L++ G ++ A + + AL+K+
Sbjct: 1885 LVPAHAATDELPVEGAVLRHKRVLLVEDNELNSRVVLGYLEESGVMLDMAENGQQALEKV 1944
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
Q H +D MD+QMP MDG ATR+IR A DE LPI+A
Sbjct: 1945 QEVH-YDVVLMDLQMPIMDGITATRKIR--------------------AVFDEKTLPIVA 1983
Query: 960 MTADVIHATFDE---CLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
MTA HA+ ++ CL+ GM+ Y++KP + + LY + + S P
Sbjct: 1984 MTA---HASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHMSSVP 2026
>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
degradans 2-40]
gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 765
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 184/622 (29%), Positives = 280/622 (45%), Gaps = 115/622 (18%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEAA+ AKSQF+AT+SHEIRTPMNG++GM+ +L DT L +QR Y + G +L+ +I
Sbjct: 246 AEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTLDDSQRHYLGIIERSGDSLMNII 305
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA K+ LE + F+L +L+D + +FS + + IEL +S P+ ++GD
Sbjct: 306 NDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICSISPNTPKQLMGD 365
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
P R +Q++ NL+GN+ KFT GHI+V+ R + +DA D +++ E+ SG
Sbjct: 366 PTRLKQVLVNLIGNAFKFTSEGHIYVEA----RQVNASDA-DLPMIHFSVED----SGI- 415
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
G+E+ +D F Q++ S GG TG+G
Sbjct: 416 ------GIESNQQEKLFDAF--------CQADGSTTRKF---GG------------TGLG 446
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ + Q L E+M G+I SR + GSTF F+
Sbjct: 447 LTICKQ------------------------------LAEMMGGEIGVYSREKAGSTFWFS 476
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
AVF ++ + +E P G K +VV++ + V H I ++ S
Sbjct: 477 AVFTHVEKAI--------NEQPPQSLAGKKLLVVNQSKIVEKVIASHAADWNIACRIVHS 528
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCW-ISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+ L + D I++ +D + G D + L + +F
Sbjct: 529 -------GEKALEVISGQHHYDFIILSQDLQDMPGLDVADKVRTLAAYSSTPIF------ 575
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
L T + K + + + ++ PL I L Q T + + ++
Sbjct: 576 -LVTKVRKSQLPEDRLHTIT-ALLPYPLSIHKIENLL-QTKPTHTVVEEQKTNTQATTVS 632
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDI 912
+G L +LV +DN VNRMV G L KF + A AL+ + +SP +D MD
Sbjct: 633 EGPLH---VLVAEDNPVNRMVIEGLLAKFDIAPKFAEDGLQALNAVTESPTPYDLIIMDC 689
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
+MPEMDGFEATR IR ES N+ I+A+TA V
Sbjct: 690 EMPEMDGFEATRSIRTWESNNNQPATT-----------------IIALTAHVEAEHRQRV 732
Query: 973 LKCGMDGYVSKPFEEENLYREL 994
GM+ Y+SKP E L L
Sbjct: 733 FDSGMNYYLSKPVTMEKLSEAL 754
>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 1702
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 191/653 (29%), Positives = 298/653 (45%), Gaps = 122/653 (18%)
Query: 356 IHIVK--VEDDFHKMQELKVR-------AEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
++I+K + + H ++E ++ AEAA AKS F+A +SHEIRTPMNGI+GM L
Sbjct: 1049 VNILKAIINEMIHNLKETTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDL 1108
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
LDT+L++ QR+Y Q +L+ +IN++LD +KIEA +LEL+ F+LR IL + L
Sbjct: 1109 TLDTELNAEQREYLTMVQSSAASLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLK 1168
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+ +S KG+E+ + P+ ++GDPGR RQI+TNLVGN++KFT G + + V L
Sbjct: 1169 TLAWRSHQKGLEIICDIIPDTPDHLIGDPGRLRQIVTNLVGNAIKFTAEGEVSLTVKL-- 1226
Query: 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSN 586
E + NG + TG G+ A +K HLI Q++
Sbjct: 1227 ----------EDITNGEVTLAFSVADTG-----IGIPA-------EKL-HLIFEAFSQAD 1263
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
SI GG TG+G+ +S +
Sbjct: 1264 GSITRKY---GG------------TGLGLTISTR-------------------------- 1282
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV 706
LVELM G++ S P GS F F A F + Q+ +E+ K + +
Sbjct: 1283 ----LVELMGGKLKAESIPGKGSRFDFIAKF---------PLGQAPTENSKIMLKDVNTL 1329
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCW 765
++D+ V L+ G+ S+ D+ +A + L + K QP + I + D
Sbjct: 1330 IIDDNKSTRRVLHQMLSEYGV----SADTTDSQDSAFHMLREAAMKKQPYEYIFM--DAQ 1383
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
++G+D A+ + P+ + LI + E + G+ + P+
Sbjct: 1384 LNGKDGFLVAEAIKQDPSFGQASIIMLICGSGQRGDPENRSSVISGYLSKPV-SPVEMLE 1442
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+ C + L + +Q R P + +IL+ +DN VN+ +A L++FG
Sbjct: 1443 VIQCSTKPL-IKQLQQITRDTPQPAPIQS------EILLAEDNVVNQRLAIRLLERFGHK 1495
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V A + A+ + FD MD+QMP M GFEAT IR E++MN
Sbjct: 1496 VTLAENGLQAVAASEMKD-FDLILMDVQMPHMGGFEATSTIR-----IREKVMNK----- 1544
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
H PI+AMTA + ++CL GMD Y+SKP + L + K+
Sbjct: 1545 --------HTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINPDQLRAVIEKYL 1589
>gi|410635517|ref|ZP_11346128.1| hypothetical protein GLIP_0687 [Glaciecola lipolytica E3]
gi|410144918|dbj|GAC13333.1| hypothetical protein GLIP_0687 [Glaciecola lipolytica E3]
Length = 1184
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 189/652 (28%), Positives = 306/652 (46%), Gaps = 132/652 (20%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D +++E + +A+ A AKS FLA +SHEIRTP+NGI+GM LLL+T LS Q YA+ A
Sbjct: 650 DITELKEAEEQAKVASQAKSDFLANMSHEIRTPINGIIGMNDLLLNTPLSEQQLKYAELA 709
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
Q G+ L+ALIN++LD +KIEA KL++E + F+L +L + FS ++ K +EL +
Sbjct: 710 QNSGQILLALINDILDFSKIEAGKLDIENIEFDLHEMLHCFVESFSLRAEEKQLELIFSM 769
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
KVP+++ GDPGR RQI++NL N++KFT++G I +KV+L D L+
Sbjct: 770 QAKVPKWIKGDPGRIRQILSNLTSNAIKFTQQGEIVIKVNL---------LADNKLIFCV 820
Query: 544 TEEGVCRSGTGQ---FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
+ G+ S Q F S L+A+ R KF GG
Sbjct: 821 VDSGIGISENKQKQLFQKFSQLDASTTR----KF----------------------GG-- 852
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
TG+G+ ++ + M +G G+
Sbjct: 853 ----------TGLGLSIAKELVELM------------HGEIGVN---------------- 874
Query: 661 FVSRPQVGSTFSFTAVFGKCKE--------YVFEDIKQSKSEDLPPGFKGLKAVVVDEKP 712
S + GS F FT F E Y +E+I L+ ++VD+
Sbjct: 875 --SEWKKGSEFWFTIQFDPASERKNSGNLDYSYENI------------ANLRVLIVDDNK 920
Query: 713 VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDS 771
V L I V + +++ + K +SE+K DI +++ D I+G +
Sbjct: 921 TNREVLCSILESQKINVVQA---QNSPAALKLLRQNSENKKPIDIAIIDADMPGINGTEL 977
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
G + + F K+IL+ + + + K ++ GF D KP++ + + +
Sbjct: 978 GKAIK------SDQRFTKIKMILMTSTAQRGDAQKFQSIGF-DAYFSKPIKNDDLLSAIS 1030
Query: 832 QVLSTENKR--QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+ + N R A + +S + L+ ++L+V+DN +N+ VA LK E A
Sbjct: 1031 VIANQINTRTETAFEMITKRNSIRKP-LQMPRVLLVEDNIINQAVADEMLKNLNCQTELA 1089
Query: 890 ASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ AL++L Q+ FD MD QMP MDG+EA+R+IR +
Sbjct: 1090 NNGLEALERLNQTAIPFDIVLMDCQMPVMDGYEASRKIRAAQD----------------- 1132
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
R + ++PI+A+TA+ + ++C GMDGY++KP E L L+K+ ++
Sbjct: 1133 VRFDPNIPIVALTANAMKGDQEKCFAAGMDGYLTKPIVLEELKVGLSKWLRN 1184
>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
Length = 1819
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 188/652 (28%), Positives = 294/652 (45%), Gaps = 146/652 (22%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+A A KS+FLAT+SHEIRTP+N ++GM +LLDT L+ Q D+A+ + GK+L+++
Sbjct: 1144 QALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPLNEEQADFARIIRDSGKSLLSI 1203
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA ++ LE+V F L ++D V+ +F+ + K + L +++ VP V+G
Sbjct: 1204 INDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDVPNIVVG 1263
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE-GVCRSG 552
DP R RQ++ NLVGN VKFTE+GH+ V + L ER ++E +L + G+ S
Sbjct: 1264 DPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERL------ENEVILRVEVHDTGIGLSE 1317
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
T + + ADG +M GG TG
Sbjct: 1318 TARKRLFTPFTQADG-----------------------SMTRRFGG------------TG 1342
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+G+ +ISK LVELM G+I S GSTF
Sbjct: 1343 LGL------------------------------AISKSLVELMGGEIGVESVEGQGSTFW 1372
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
FT E Q S + F G + V+ PV + L+ + V
Sbjct: 1373 FTVTLSVRPE-------QPASVEW-EAFAGKRVFVLSHDPVEKHFLETMLSGWQMQVHSG 1424
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
++DA + +D+ F+ +LD + +
Sbjct: 1425 CEVEDAVECLR-------------------------KDAHFDLAILDISLPADLLR---- 1455
Query: 793 ILLATNISK--------DECDKAKAGGFADTV--IMKPLRASMIAACLQQVLS---TENK 839
LL+ +IS+ +E DK A + V I++P+R S++ ++ + T +
Sbjct: 1456 NLLSHDISRATILLANLNERDKCVAYEQLERVVTILRPVRQSVLMETMRSLFMDHLTGER 1515
Query: 840 RQAGRGVPNGSSF-----HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ V + F H K +L+ +DN N+ +A LK+ G + + +
Sbjct: 1516 VLSYSIVVDEPDFDFPPQHVEPDGEKIVLLAEDNSANQRLATVQLKRLGYQADLVTTGEQ 1575
Query: 895 ALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
AL+ ++ P + A MD QMP MDGFEATRRIR+ E T +R
Sbjct: 1576 ALEMYMRHPERYLAILMDCQMPVMDGFEATRRIREFEH---------------TRQR--- 1617
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
H+PI+AMTA+ + + C++ GMD Y+SKP + L LA ++ SG
Sbjct: 1618 HIPIIAMTANAMQGDREACIQAGMDDYISKPVSIQRLGEVLAAVERAVRPSG 1669
>gi|408420706|ref|YP_006762120.1| two component system sensor histidine kinase, hybrid [Desulfobacula
toluolica Tol2]
gi|405107919|emb|CCK81416.1| two component system sensor histidine kinase, hybrid [Desulfobacula
toluolica Tol2]
Length = 1164
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 205/748 (27%), Positives = 320/748 (42%), Gaps = 172/748 (22%)
Query: 294 QNQDGDMSLLHESELDFGDSFRKHKMICRYH-----QKASTPWTALTTAFFLFVIGLLVG 348
+N D D E + F K K + + S W + T + + GL G
Sbjct: 337 KNMDEDFYAFKEDKKRFLQLIDKDKKVYGFRFQIRRNDNSFFWAEMNTRY-IESEGLFEG 395
Query: 349 YIL-YGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
IL + + K E++ ++ A A+ AKS+FLA +SHEIRTP+N ++G+ LL
Sbjct: 396 RILDISERLEVEKAENE-------RLAALASSNAKSKFLANMSHEIRTPLNAVIGLGDLL 448
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
T LS Q Y AL+ALIN++LD +KIEA LELEA+ F+L +++++ +
Sbjct: 449 RRTALSEKQEQYLSKMNSSSHALLALINDILDFSKIEAGHLELEAIPFSLYEVIENLTEM 508
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
F K+ K IE V + +P ++GDP T G I + +
Sbjct: 509 FGLKANEKEIEFLVAIEKGIPNALIGDP-----------------TRLGQILINL---TG 548
Query: 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNA 587
+K K E ++ G EE E DG + GF
Sbjct: 549 NALKFIQKGEIVIKAGLEE----------------EKEDGSLVF----------GF---- 578
Query: 588 SIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647
V+DTG GI S +F F Q D S +R YGGTG+GL+I
Sbjct: 579 -------------------SVKDTGPGIEPSRINSIFDSFTQEDQSVTRKYGGTGLGLAI 619
Query: 648 SKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
+K LVE+M G IS S+ GS FSFT F + + + + P +GL +V
Sbjct: 620 TKQLVEIMGGDISVESKLGEGSKFSFTVCFKS------QPLDKQLIINPPKDLRGLSVLV 673
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
VD+ + + + V+ +SS + A +NG
Sbjct: 674 VDDNQAAREIISEIIVSFQMKVETASSGEQALFMLENG---------------------- 711
Query: 768 GEDSGFNAQLLDWKPNG--------------HVFKLPKLILLATNISKD---ECDKAKAG 810
++ ++ LLDWK G + KLP + +++ +D E D++
Sbjct: 712 --NNTYDLILLDWKMPGMNGIETARQIKRGVKLDKLPIICMISAYGREDLMQEADRS--- 766
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK---------- 860
F D + KP+ S++ + ++ KRQ N SF +G G
Sbjct: 767 -FLDVFLHKPINPSLLFNSIMEIYG--RKRQDENFQEN--SFQEGDFLGSAQKNTAAIPH 821
Query: 861 ---KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
IL+V+DN +N+ +A L + G V C + + A+D+L++ FD MDIQMP M
Sbjct: 822 IKGNILLVEDNTINKEIALEWLTQAGLNVLCVENGREAIDQLEA-RPFDLVLMDIQMPVM 880
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG EATR +R +++ LPI+AMTA + ++ ++ GM
Sbjct: 881 DGLEATRILR--------------------SRKKFNSLPIIAMTAHALSGDREKGIEAGM 920
Query: 978 DGYVSKPFEEENLYRELAKFFKSKPLSG 1005
+ Y++KP + L++ L+ + K SG
Sbjct: 921 NDYITKPIDPALLFKTLSIYLKPFLRSG 948
>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
Length = 1682
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 192/645 (29%), Positives = 294/645 (45%), Gaps = 126/645 (19%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
F ++ + AE A AK+ FLA +SHEIRTPMN ++GM L+L+TDL+ QRDY + Q
Sbjct: 919 FQTVRNAQKLAEDAARAKANFLANMSHEIRTPMNAVIGMTHLVLNTDLTRQQRDYLKKIQ 978
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
+ L+ +IN++LD +KIEA K+ +E + F+L +L++V L SEK+ KG+EL + V
Sbjct: 979 GSSQHLLGIINDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLELIIDVG 1038
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
VP ++GDP R Q++ N N+VKFTERG I ++ LAE T +D L T
Sbjct: 1039 KTVPRSLVGDPLRLGQVLINYANNAVKFTERGSIVIRCDLAE-----TAERDVVLRFSVT 1093
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
+ G+ G+EA ++ L FQ+ N G
Sbjct: 1094 DTGI------------GIEA-------EQIPRL-----FQTFEQADNSTTRKYGG----- 1124
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
TG+G+ +S R M ++ YG
Sbjct: 1125 ------TGLGLAIS---RELAHMMGGEAGVDSEYGK------------------------ 1151
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP--GFKGLKAVVVDEKPVRAAVTQYHL 722
GSTF FTA + L P +G K +VVD+ + V
Sbjct: 1152 ---GSTFWFTARLARGS---------GSDRSLVPDADLRGRKVLVVDDNDLAREV----- 1194
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII-----LVEKDCWISGEDSGFNAQL 777
+G +++ S+ A STA +GL + ++ + + +V D + G D A+
Sbjct: 1195 --IGDLLR---SMSFAVSTASSGLEALDEIQRANAAGMPYEVVFLDWQMPGIDGVETARR 1249
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ P+L L+ T +DE K+ A +++KP+ AS++ L + L
Sbjct: 1250 I---KRALAASSPRL-LMVTAYGRDEVMKSAADAGIHDLLIKPVTASLLFDTLMRALGRA 1305
Query: 838 NKRQAGRGVPNGSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
A VP + L + G +IL+V+DN +N+ VA G L G VE A + A
Sbjct: 1306 RGDDA--QVPGDALRGADLDAIAGARILLVEDNDLNQEVAVGLLAGAGFVVEVAENGAVA 1363
Query: 896 LDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
LD LQ+ P C+D MD+QMP MDG AT IR++
Sbjct: 1364 LDLLQAGGPGCYDLVLMDMQMPVMDGVTATGEIRRLPGFDT------------------- 1404
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+AMTA+ + + ++CL GMD +++KP + L+ L +
Sbjct: 1405 -LPIVAMTANAMASDREKCLAAGMDDHLAKPIDPPALWAALRHWI 1448
>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1410
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 195/708 (27%), Positives = 331/708 (46%), Gaps = 88/708 (12%)
Query: 317 HKMICRYHQKAST-PWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRA 375
+ ++C + Q+ T P+ A+ + L+ +I G+ + K D K+++ A
Sbjct: 618 YGILCFWSQQTKTEPFKAVDREL----LKLMAQWI--GSELERQKTAQDLAKVRD---EA 668
Query: 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALIN 435
AA AKS+FLAT+SHEIRTPMN ++GM LLLDT L+STQ+DY +T + AL++LIN
Sbjct: 669 LAATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTRLTSTQQDYVETIRSSSDALLSLIN 728
Query: 436 EVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP 495
++LD +KIE+ KLELE F+LR +++ L L + K+ +K IELA + P V+GD
Sbjct: 729 DILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPITPSKVIGDG 788
Query: 496 GRFRQIITNLVGNSVKFTERGHIFVKVH-LAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R RQI+ NL+ N+VKFTE G + + + ++ +V + DE T+ +
Sbjct: 789 ARLRQILVNLLSNAVKFTETGEVVISLKAVSLEPIVSEENLDENSTETTTQPNRYQIQFA 848
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED--TG 612
+T G+ A + F + + Q + + ++ S +E + + VE T
Sbjct: 849 VRDTGIGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGLVISKRLAEMMGGQMWVESHKTI 908
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
G P + F+P M + I ++ + SF+ VGSTF
Sbjct: 909 AGEPPTD----FIPSMTNSTGNRPLLDPVKID--------QVSQTSKSFIPNKAVGSTFY 956
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
FT + C K P + ++VD V G++ K +
Sbjct: 957 FTIIVESCSHL-------KKEWGKTPELTEKRLLIVDNNATNRQVLTLQTQAWGMLAKTA 1009
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
++ +A + + G + F D+ L+E + ++ P +K L
Sbjct: 1010 ANGVEALNILRQG-----EPF--DMALLEMQM-PDFDGLSLAKEIRKLSP----YKRVPL 1057
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---------NKRQAG 843
+LL T++ + D+A+ F+ + KP++ S + L +L E ++ +
Sbjct: 1058 VLL-TSMGRQSIDRAQLYDFS-ACLNKPIKQSQLYNVLMNILGGESLEVHLADKDRVKLT 1115
Query: 844 RGVPNGSSFHQGLLRGK----KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+ +P L K +IL+ +D+ VN+ VA L++ G + A + L+ L
Sbjct: 1116 KDIP---------LLAKTLPLRILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEAL 1166
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-IL 958
+ +D MD+QMPEMDG EA R+I+++ G ++D P I+
Sbjct: 1167 RR-QTYDVILMDMQMPEMDGLEAARQIKKLY---------------GDREQDMSERPRII 1210
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
A+TA+ + + ++C+ GMD Y+SKP E L L + KP++ A
Sbjct: 1211 AVTANAMESDRNDCIAAGMDDYISKPIRMEQLVSVLK---QCKPINQA 1255
>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
Length = 934
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 204/671 (30%), Positives = 299/671 (44%), Gaps = 163/671 (24%)
Query: 357 HIVKVEDDFHK------MQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
H + EDD + +Q + R A +A+ AKS FLA +SHE+RTP+N I G +
Sbjct: 253 HTEQTEDDLRRTLDTLEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIH 312
Query: 406 LLLDTD-LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
L+L D LS+ Q Y QT + L+ALIN+VLD +KI+A KLELE F+L + DV
Sbjct: 313 LMLRQDNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDV 372
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+ + S + K I++A + D VP++++GD RF+QI+TNL+ N++KFT G I V
Sbjct: 373 MDMLSPLAAQKQIDMAFYYGDDVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIV---- 428
Query: 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
R ++ D ++ LL+ ++ SG G LSG D + ++ F Q
Sbjct: 429 --RARMEQDGMEQCLLHFSVQD----SGIG----LSG---TDRKKLFESFS--------Q 467
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
+ S+ GG TG+G
Sbjct: 468 GDTSVTRQF---GG------------TGLG------------------------------ 482
Query: 645 LSISKCLVELMRGQISFVSR-----PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG 699
L+ISK LV LM+GQI F + GSTF FTA+FG E+ E P
Sbjct: 483 LAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEH----------EQQHPN 532
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIIL 759
F+ + + P A V +++L + + SI D S SE
Sbjct: 533 FEHIHVLSFLAHPATANVLRHYLENYQVKHTETQSILDLFSRLNQLKDQSE--------- 583
Query: 760 VEKDCWISGEDSGFNAQLLDW---KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
+ W+ + SG + LL + +GH+ ++L NI + +A
Sbjct: 584 ---NTWLIVDHSGDSEALLKEIRSRYSGHLAVYGYQMVLEPNI----LTEYRA------- 629
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL-----RGKKILVVDDNGVN 871
+PL + L Q+LS N F Q L RG IL VDD+ N
Sbjct: 630 --RPLYQPLSRTALIQLLS------------NQPVFEQDSLESFNGRGLHILAVDDHLPN 675
Query: 872 RMVAAGALKKFGATVECAASAKAALDKL-----QSPHCFDACFMDIQMPEMDGFEATRRI 926
+V L + T A S + ALD L + FD FMDIQMP M G + TR I
Sbjct: 676 LIVLEALLGELNVTTTKALSGQEALDILHHQIERKEKLFDLIFMDIQMPVMSGIDTTRAI 735
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R +E S+++G E+HLPI+A+TA + ++ LK GMD YV+KP +
Sbjct: 736 RSLE-----------STLEG-----EVHLPIIALTAHALADEKNKLLKVGMDDYVTKPIQ 779
Query: 987 EENLYRELAKF 997
+ L L ++
Sbjct: 780 IDQLIHILTQW 790
>gi|421854961|ref|ZP_16287344.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403189622|dbj|GAB73545.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 934
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 204/671 (30%), Positives = 299/671 (44%), Gaps = 163/671 (24%)
Query: 357 HIVKVEDDFHK------MQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
H + EDD + +Q + R A +A+ AKS FLA +SHE+RTP+N I G +
Sbjct: 253 HTEQTEDDLRRTLDTLEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIH 312
Query: 406 LLLDTD-LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
L+L D LS+ Q Y QT + L+ALIN+VLD +KI+A KLELE F+L + DV
Sbjct: 313 LMLRQDNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDV 372
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+ + S + K I++A + D VP++++GD RF+QI+TNL+ N++KFT G I V
Sbjct: 373 MDMLSPLAAQKQIDMAFYYGDDVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIV---- 428
Query: 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
R ++ D ++ LL+ ++ SG G LSG D + ++ F Q
Sbjct: 429 --RARMEQDGMEQCLLHFSVQD----SGIG----LSG---TDRKKLFESFS--------Q 467
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
+ S+ GG TG+G
Sbjct: 468 GDTSVTRQF---GG------------TGLG------------------------------ 482
Query: 645 LSISKCLVELMRGQISFVSR-----PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG 699
L+ISK LV LM+GQI F + GSTF FTA+FG E+ E P
Sbjct: 483 LAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEH----------EQQHPN 532
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIIL 759
F+ + + P A V +++L + + SI D S SE
Sbjct: 533 FEHIHVLSFLAHPATANVLRHYLENYQVKHTETQSILDLFSRLNQLKDQSE--------- 583
Query: 760 VEKDCWISGEDSGFNAQLLDW---KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
+ W+ + SG + LL + +GH+ ++L NI + +A
Sbjct: 584 ---NTWLIVDHSGDSEALLKEIRSRYSGHLAVYGYQMVLEPNI----LTEYRA------- 629
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL-----RGKKILVVDDNGVN 871
+PL + L Q+LS N F Q L RG IL VDD+ N
Sbjct: 630 --RPLYQPLSRTALIQLLS------------NQPVFEQDSLESFNGRGLHILAVDDHLPN 675
Query: 872 RMVAAGALKKFGATVECAASAKAALDKL-----QSPHCFDACFMDIQMPEMDGFEATRRI 926
+V L + T A S + ALD L + FD FMDIQMP M G + TR I
Sbjct: 676 LIVLEALLGELNVTTTKALSGQEALDILHHQIERKEKLFDLIFMDIQMPVMSGIDTTRAI 735
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R +E S+++G E+HLPI+A+TA + ++ LK GMD YV+KP +
Sbjct: 736 RSLE-----------STLEG-----EVHLPIIALTAHALADEKNKLLKVGMDDYVTKPIQ 779
Query: 987 EENLYRELAKF 997
+ L L ++
Sbjct: 780 IDQLIHILTQW 790
>gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
salsuginis DSM 16511]
gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
salsuginis DSM 16511]
Length = 1054
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 180/629 (28%), Positives = 282/629 (44%), Gaps = 125/629 (19%)
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
A+ AK FLA +SHEIRTP+NGI+G LL +T LS Q+++ + L++++N++
Sbjct: 376 ANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNTPLSPDQQEFISVIENSSDNLLSIVNDI 435
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD +KI A K+ELE + FN +D + + K+ K I+ +FV +P+
Sbjct: 436 LDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPK-------- 487
Query: 498 FRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFN 557
LVG+ K ++ V V+L + T++ NG E
Sbjct: 488 ------TLVGDPTKISQ-----VIVNLVSNAIKFTNS------NGDVE------------ 518
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
+ + +N +D T+ V DTGIGI
Sbjct: 519 --------------------------------VLIEKTNETDKDATIYFAVRDTGIGITE 546
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
+ ++F F QAD+ TSR YGGTG+GL+IS LVE M G++ S P GSTF FT
Sbjct: 547 EQKAKIFGAFSQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGSTFFFTLTL 606
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR----LGIMVKMSS 733
K + Q+K P F G+ A V + V+ VT +L R LGI +M
Sbjct: 607 PKGPD-------QAKE---IPDFHGVSAAAVLPETVKERVTMRNLQRYAEFLGIDFRM-- 654
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
S + L + E PD + +E GE+ + LD +++
Sbjct: 655 ----LSYSELFALPAEE---LPDALFIEHQYARRGEELN---KFLDLD--------TRVV 696
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
L+ T I K + + +I KPL ++ L + + + P
Sbjct: 697 LITTGILKKAAESVR--DRVSKIIYKPLNYHKTVRAIESALEWKKQPRPQAAAPQKEE-E 753
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
+G + KILV +DN +N+ + L++FGA V A++ K A + L+ + +D FMDIQ
Sbjct: 754 EG-FKDLKILVAEDNPINQKLIRTTLEQFGADVTLASNGKEAFE-LRKQNDYDLIFMDIQ 811
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MP M+G EATR I E V+ H+PI+A+TA+ + + L
Sbjct: 812 MPVMNGIEATREILHYE------------QVNHLP-----HIPIVALTANALTGDRERYL 854
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+ G+D Y+ KP L + ++ +++ KP
Sbjct: 855 EAGLDNYIPKPINIPELKQIISLYYQEKP 883
>gi|333994111|ref|YP_004526724.1| sensory transduction histidine kinase [Treponema azotonutricium
ZAS-9]
gi|333736058|gb|AEF82007.1| sensory transduction histidine kinase [Treponema azotonutricium
ZAS-9]
Length = 1242
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 189/647 (29%), Positives = 293/647 (45%), Gaps = 154/647 (23%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD-TDLSSTQRDYA-QTAQICGKALI 431
+A A AK FL+ +SHE+RTPMN I+GM ++ + +D+ ++DYA + L+
Sbjct: 564 QAVQASKAKGDFLSNMSHEMRTPMNAIIGMTSIGKNASDIE--KKDYAFGKIEDASTHLL 621
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KLEL V F +L V+++ + + + V + K+P +
Sbjct: 622 GVINDILDMSKIEANKLELSPVTFEFEKMLQKVVNVINFRIDQRQQSFYVTIDKKIPNSL 681
Query: 492 LGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR 550
+GD R Q+ITNL+ N+VKFT E+G I + H A G E G C
Sbjct: 682 IGDDQRLAQVITNLLSNAVKFTPEQGTIRLNAHYA-----------------GEENGFC- 723
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
I+ + ++ G
Sbjct: 724 --------------------------------------IVQIEVTDSG------------ 733
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
IGI QER+F F QA+SST+R +GGTG+GL+ISK +VELM GQI S GST
Sbjct: 734 --IGISPEQQERLFTSFEQAESSTTRKFGGTGLGLAISKRIVELMGGQIWIESELGQGST 791
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLN---RL 725
F+FT K K L PG + +K + VD++P + QY +
Sbjct: 792 FAFTIKMQKG--------SIEKRNFLNPGVNWSNVKILAVDDEP---EILQYFADVAENF 840
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNG 784
G+ ++S ++A ++ EK C ++ +DWK P
Sbjct: 841 GVKCDLASGSEEALK-----------------LIDEKGC--------YDIYFIDWKMPGM 875
Query: 785 HVFKLPKLI-------LLATNISKDECD----KAKAGGFADTVIMKPLRASMIAACLQQV 833
+ +L K I + T IS E +AK+ G D I KPL S IA + +
Sbjct: 876 NGMELSKKIKETSGGKSVVTMISGVEWSTIEREAKSAG-VDKFIAKPLFPSAIADLVNEC 934
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
L +N + + G G ++L+ +D +NR + L+ +++CA +
Sbjct: 935 LGVDNAVLPSDTIED----QDGCFEGFQLLLAEDVEINREIVLTLLEPTSLSIDCAENGA 990
Query: 894 AALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQME-SKANEQMMNGGSSVDGTAKRD 951
A+D ++P +D FMD+QMP+MDG+EATR IR M+ KA+
Sbjct: 991 IAVDLFRKNPDKYDMIFMDVQMPQMDGYEATRTIRAMDFEKAHA---------------- 1034
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA+V ++ L GM+ +V KP + + +L K+
Sbjct: 1035 ---IPIVAMTANVFREDIEKSLAAGMNDHVGKPLDFNEVLAKLRKYL 1078
>gi|421464586|ref|ZP_15913276.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
gi|400205339|gb|EJO36320.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
Length = 934
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 204/671 (30%), Positives = 299/671 (44%), Gaps = 163/671 (24%)
Query: 357 HIVKVEDDFHK------MQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
H + EDD + +Q + R A +A+ AKS FLA +SHE+RTP+N I G +
Sbjct: 253 HTEQTEDDLRRTLDTLEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIH 312
Query: 406 LLLDTD-LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
L+L D LS+ Q Y QT + L+ALIN+VLD +KI+A KLELE F+L + DV
Sbjct: 313 LMLRQDNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDV 372
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+ + S + K I++A + D VP++++GD RF+QI+TNL+ N++KFT G I V
Sbjct: 373 MDMLSPLAAQKQIDMAFYYGDDVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIV---- 428
Query: 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
R ++ D ++ LL+ ++ SG G LSG D + ++ F Q
Sbjct: 429 --RARMEQDGMEQCLLHFSVQD----SGIG----LSG---TDRKKLFESFS--------Q 467
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
+ S+ GG TG+G
Sbjct: 468 GDTSVTRQF---GG------------TGLG------------------------------ 482
Query: 645 LSISKCLVELMRGQISFVSR-----PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG 699
L+ISK LV LM+GQI F + GSTF FTA+FG E+ E P
Sbjct: 483 LAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEH----------EQQHPN 532
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIIL 759
F+ + + P A V +++L + + SI D S SE
Sbjct: 533 FEHIHVLSFLAHPATANVLRHYLENYQVKHTETQSILDLFSRLNQLKDQSE--------- 583
Query: 760 VEKDCWISGEDSGFNAQLLDW---KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
+ W+ + SG + LL + +GH+ ++L NI + +A
Sbjct: 584 ---NTWLIVDHSGDSEALLKEIRSRYSGHLAVYGYQMVLEPNI----LTEYRA------- 629
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL-----RGKKILVVDDNGVN 871
+PL + L Q+LS N F Q L RG IL VDD+ N
Sbjct: 630 --RPLYQPLSRTALIQLLS------------NQPVFEQDSLESFNGRGLHILAVDDHLPN 675
Query: 872 RMVAAGALKKFGATVECAASAKAALDKL-----QSPHCFDACFMDIQMPEMDGFEATRRI 926
+V L + T A S + ALD L + FD FMDIQMP M G + TR I
Sbjct: 676 LIVLEALLGELNVTTTKALSGQEALDILHHQIERKEKLFDLIFMDIQMPVMSGIDTTRAI 735
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R +E S+++G E+HLPI+A+TA + ++ LK GMD YV+KP +
Sbjct: 736 RSLE-----------STLEG-----EVHLPIIALTAHALADEKNKLLKVGMDDYVTKPIQ 779
Query: 987 EENLYRELAKF 997
+ L L ++
Sbjct: 780 IDQLIHILTQW 790
>gi|392410144|ref|YP_006446751.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623280|gb|AFM24487.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1125
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 196/705 (27%), Positives = 318/705 (45%), Gaps = 146/705 (20%)
Query: 310 FGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILY------GAAIHIVKVED 363
F FR + M R + PW T + V L+ Y ++ G ++++
Sbjct: 422 FSGIFRHYHMGTR-----TEPWECTLTWNNMHV--LVRIYPMFKNETYNGLILNVI---- 470
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D ++++ + RA+ AD +KSQFLA +SHEIRTPMN I+GM L L+T L+ QR+Y +T
Sbjct: 471 DVTELEQSRERAQQADRSKSQFLANMSHEIRTPMNAIIGMAELALNTTLTQVQREYIETI 530
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
++ +L+ALIN++LD +KIEA KL+L F R + V+ S ++ +KG+ELA +
Sbjct: 531 EMSAHSLLALINDILDFSKIEAGKLQLLPGPFCFRDHVCSVVQTLSLQAHSKGLELACGI 590
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNG- 542
+ +P ++GD R QI+ NLVGN++KFT G + V+V + R+ +D L
Sbjct: 591 APSIPANLIGDQDRIGQILLNLVGNAIKFTAHGEVLVQVDMESRS------EDRVYLRMV 644
Query: 543 GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
++ G+ Q E ADG S GG
Sbjct: 645 VSDTGIGIPYEKQKTIFCEFEQADGSTS-----------------------RQYGG---- 677
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TG+G+ ++AQ LVELM G+I
Sbjct: 678 --------TGLGLAITAQ------------------------------LVELMGGKIWVE 699
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
S GS F ++ + E +P +G+ +VVD+ + + L
Sbjct: 700 STLGKGSKFHVNLPL---------QVQHTPEESIPNSLEGISVLVVDDNATNRRILEEVL 750
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQLLDWK 781
+ + SS +A + + + E F I+ DC + E +GF + + +
Sbjct: 751 TQWDMHPVAVSSGMEALRSLREKRDAGE-SFDLAIV----DCMMP-EMNGFQLSAEIRSE 804
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
P+ K IL+ T+ S D ++ D ++KP+ S + + ++L
Sbjct: 805 PDFASLK----ILMLTSASPDTSAESLQLLNIDACLLKPIHQSNLYNTIVRIL------- 853
Query: 842 AGRGVPNGSSFHQGLLR------GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
+G + + LR +IL+ +DN N+ VA G L + G +V+ ++ +
Sbjct: 854 --QGPKDSCAPEPAQLRLPVADTPSRILLAEDNAFNQKVALGMLTQMGHSVKVVSNGQEV 911
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L+ +++ FD MD+QMP MDGFEAT+RIR++E +GG
Sbjct: 912 LNAIENER-FDLILMDVQMPHMDGFEATKRIRRLEEH------DGGGRT----------- 953
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
PI+AMTA + ++CL+ GMDGY+SKP RELA ++
Sbjct: 954 PIIAMTAYAMKGDREKCLQTGMDGYLSKPVNS----RELASMIEN 994
>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 684
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 192/628 (30%), Positives = 282/628 (44%), Gaps = 107/628 (17%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLAT+SHEIRTP+N ++G+ +L +T L + Q+D +T + G+ L+ IN+VLD A
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAHQQDLVETIRQSGETLLITINDVLDFA 217
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ KLELE FNLR L+ + LF+ K+ KG+EL F+ DP ++
Sbjct: 218 KIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFI----------DP----EV 263
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+ LVG+ + + + ++L + TD G V
Sbjct: 264 PSTLVGDVTRLRQ-----ILINLLSNAIKFTDV-------GEVSVSV------------- 298
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
K +H Q+ S S V ++ V+DTGIGIP
Sbjct: 299 -----------KVEHCYVTNSTQNQDS--------HTSPTVCILFSVKDTGIGIPKDRFN 339
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
R+F F Q DSST+R YGGTG+GL ISK L E+M G+I S GSTFSF V
Sbjct: 340 RLFQRFSQLDSSTTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFCVVLS--- 396
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
V +D + P G + +++D+ P + G++ + + S +A
Sbjct: 397 --VDQDASEPNLITPQPQLAGKRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEA--- 451
Query: 742 AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
L K D+ ++++ E +G L +G FK L+LL T I K
Sbjct: 452 ----LAWLNQKEAFDVAIIDRQM---PEMNGLTLGLQIHNQSG--FKELPLVLL-TPIGK 501
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVL---STENKRQAGRGVPNGSSFHQGLLR 858
+ + KP++ + L QVL +T K Q S Q L
Sbjct: 502 MTTKTSLIERHFAACLPKPIKLGQLYNTLTQVLGRQATAIKSQPASPESGDSPLAQQL-- 559
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+IL+ +DN VN+ V LK+ G + ++ + LD + S +D MD+QMPEMD
Sbjct: 560 PLRILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAI-SRQSYDVILMDVQMPEMD 618
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G ATR I Q S+ I+A+TA+ + + CLK GMD
Sbjct: 619 GLTATRYICQNYSQRPW---------------------IIALTANAMQEDRETCLKAGMD 657
Query: 979 GYVSKPFEEENLYRELAKFFKSKPLSGA 1006
Y+SKP + +L R FK PL A
Sbjct: 658 DYISKPIRQADLIR----VFKMIPLRQA 681
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
IL+VDD N + L G V S K AL+ + + D +DI+MPEMDG+E
Sbjct: 13 ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPP-DLILLDIKMPEMDGYE 71
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD--ECLKCGMDG 979
+R++ E A +P++ ++A + +D + + G
Sbjct: 72 VCQRLKADEKTA--------------------EIPVIFLSA--LDEVWDKVKAFEVGGVD 109
Query: 980 YVSKPFEEENL 990
Y++KPF+ E +
Sbjct: 110 YITKPFQLEEV 120
>gi|240141277|ref|YP_002965757.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
AM1]
gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
extorquens AM1]
Length = 698
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 184/639 (28%), Positives = 286/639 (44%), Gaps = 145/639 (22%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ E K RAEAA+VAKS+FLATVSHE+RTP+NGILGM LLLDT L QR Y + + G
Sbjct: 167 LDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSG 226
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL+ L++ +LD ++IEA +L+L A F++ A+++ V+ L + ++++KG+E+A+ ++D +
Sbjct: 227 KALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDL 286
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+GD R RQI+ NL GN++KFT+ G + V
Sbjct: 287 AALRVGDADRVRQILVNLAGNAIKFTQTGGVGVS-------------------------- 320
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ RSG GQ E + L V
Sbjct: 321 LARSGEGQ-------------------------------------------GEGLVLTV- 336
Query: 608 VEDTGIGIPLSAQERV---FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
EDTG GIP +ER+ F F Q D S S + GTG+GL+I++ LVE M G I S
Sbjct: 337 -EDTGPGIP---EERIPILFEEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARST 390
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
GSTF + + + P K ++V P +A L+R
Sbjct: 391 VGRGSTFRVMLPLPAAEGAMSPET---------PSLAPRKVLIVAASPYQAPFLARRLSR 441
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
G ++ + +++ A + L+ V D I+ G +A +
Sbjct: 442 SG----AAAVVVNSAEAALDALSG-----------VAFDALIADRSLG-DAAVRRLAAEA 485
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA-SMIAACLQ------------ 831
+ ++L + + E A GF D+ ++KP+RA S+ L+
Sbjct: 486 ARCGVRCSLILLSPFDRREFGAPNAAGF-DSYLIKPVRARSLFDRLLEPRPAPARSPADA 544
Query: 832 -----QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ K +G+ P ++ G+++L+ +DN +N ++A AL++ GA V
Sbjct: 545 TAQPGPAKTASGKTASGKTAPTKTAAP-----GRRVLLAEDNPINALLATKALERLGAQV 599
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
A AL + FD +DI+MP +DG E RRIR E++
Sbjct: 600 IHARDGLEALAAAEGQGPFDLALIDIRMPGLDGLETARRIRAREAETGAT---------- 649
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
LHL +A+TA+ D G DG++ KP
Sbjct: 650 -----PLHL--VALTANTGREDVDAASAAGFDGFLPKPL 681
>gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
19624]
gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
19624]
Length = 1320
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 200/657 (30%), Positives = 301/657 (45%), Gaps = 148/657 (22%)
Query: 370 ELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
EL+V RA+ A AKS FLA +SHEIRTPMN I+G+ LLL T+LS Q DY + Q
Sbjct: 532 ELRVARDRAQEAAQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTELSQRQHDYLRKIQQA 591
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G+ L+ +IN++LD +KIEA KL +E F L L +V +L +EK+ KG+EL ++
Sbjct: 592 GQHLLGVINDILDLSKIEAGKLVIEHTEFQLEKALSNVANLIAEKAHAKGLELIFDIAPD 651
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP+ ++GD R QI+ N N+VKFTERG + V++ + ERT D L +
Sbjct: 652 VPQRLVGDSLRLGQILINYANNAVKFTERGEVTVQIRVRERT-----DHDVLLYCAVHDT 706
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ S Q + AD + + GG
Sbjct: 707 GIGLSVEQQKRLFQSFQQADNSTTREY-----------------------GG-------- 735
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S + + GGT +G+S +L RG
Sbjct: 736 ----TGLGLSISLE-------------LAERMGGT-VGVS-----SQLGRG--------- 763
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP--GFKGLKAVVVDEKPVRAAVTQYHLNR 724
STF FTA G I Q + +L P +G +VVD+ +AA
Sbjct: 764 --STFWFTARLG---------IGQGGTRELRPRGDLRGRTVLVVDDN--KAACL------ 804
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
++ +M S+ A +T NG + E V K SG+ + LDWK G
Sbjct: 805 --VLKEMLESMSFAVTTVSNGADAIE--------AVRKR---SGQPDAYAVVFLDWKMPG 851
Query: 785 ----------HVFKLPK--LILLATNISKDEC-DKAKAGGFADTVIMKPLRASMIAACLQ 831
H +LP I + T ++E + + G D V++KP+ S++
Sbjct: 852 MDGAETARRIHALELPDEPKIAMVTAFGREEVLHQIQDSGVGD-VLIKPVSPSLLFDTAV 910
Query: 832 QVLSTENKRQAGRGVP----NGSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGAT 885
++L R+ +P S+ Q L LRG ++LVV+DN +N+ VA L G
Sbjct: 911 RLLDDSAVREP--VIPLLENTPSALEQSLASLRGARLLVVEDNEINQQVAQELLTGAGFL 968
Query: 886 VECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
VE A + + A++K+ ++ FD MD+QMP MDG ATR +R+ S A+
Sbjct: 969 VEIADNGQIAIEKIARAKPRFDLVLMDMQMPVMDGVTATRELRKTLSPAD---------- 1018
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LPI+AMTA+ + + C+ GM +V+KP E + L+R L ++ +
Sbjct: 1019 ----------LPIVAMTANAMQHDRELCIASGMQDFVAKPIEPDELWRALLQWIPKR 1065
>gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 1131
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 193/655 (29%), Positives = 295/655 (45%), Gaps = 140/655 (21%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 582 ELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 641
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 642 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 701
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQI+TNLVGN+ V ER V D
Sbjct: 702 LPAAVIGDAGRFRQIVTNLVGNA------------VKFTERGHVFVDV------------ 737
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
GFQ A GG ++ +
Sbjct: 738 -----------------------------------GFQPAA---------GG--EIMASI 751
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
+EDTGIGIP E VF F Q D+S++R + GTG+GL+I+ LV+L G ++ S
Sbjct: 752 RIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWG 811
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F + + + LP +G + +VVD+ V + L+ G
Sbjct: 812 KGSVFTINLPFAVAAARL-------EPKPLPINVQGARILVVDDNEVNRRILTEQLSLWG 864
Query: 727 I----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ + + A G+T D PD ++G D A+ L
Sbjct: 865 FDGVAAEGGGTGLAILEAAADLGVTVDAVVLDYHMPD---------MNGADV---ARQLR 912
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
P +LP + L + +IS E + A G A +MKP RA+++ + +V+
Sbjct: 913 ADP--RFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVVRASRV 968
Query: 840 RQAGRG----------VPNGSSFHQGLLRGKK---ILVVDDNGVNRMVAAGALKKFGAT- 885
+Q VP + Q R + +LV +DN VN++V L+ G +
Sbjct: 969 KQVSEAEIARLQTEAIVPAPAPVPQK--RAAEFVDVLVAEDNEVNQIVFTQILQGTGLSF 1026
Query: 886 --VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
VE A AA ++ +P MD+ MP M+G +AT+ IR+ E
Sbjct: 1027 LVVENGEEAVAAWERY-TPRI---IMMDVSMPVMNGHQATQTIREREK------------ 1070
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
G R +PI+ +TA + + + CL GMD Y+SKP E L ++ ++
Sbjct: 1071 --GHGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWL 1119
>gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
Length = 1263
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 192/663 (28%), Positives = 304/663 (45%), Gaps = 122/663 (18%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G + G+ +G + + + +++ + AE A AKS+FLA +SHEIRTPMN ++G+
Sbjct: 507 GRVTGH--FGVQHDVTERKQQQEALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGL 564
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
LL T+L+ QRD + + L+ +IN++LD +KIE+ +LELE F L +++
Sbjct: 565 SQLLAQTELNEEQRDQVRKIHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQ 624
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
V +LF +K G+EL + +P LVG+S++ ++ I V
Sbjct: 625 VATLFGDKVHAGGLELLYDIPPHLPR--------------TLVGDSLRLSQ---ILV--- 664
Query: 524 LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGF 583
LL+ T+ R GT + G
Sbjct: 665 --------------NLLSNATK-FTERGGTVEL-------------------------GI 684
Query: 584 QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643
+ A + N A TL V DTGIG+ R+F PF QAD+ST+R YGGTG+
Sbjct: 685 RVVAPVANDQA--------TLRFHVRDTGIGMSKEQLARLFRPFSQADTSTTRRYGGTGL 736
Query: 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAV--FGKCKEYVFEDIKQSKSEDLPPGFK 701
GL IS+ LVE M G++ S P GSTFSFT G+ + + P K
Sbjct: 737 GLVISRRLVEKMGGELEVESAPGKGSTFSFTLTLPLGRDRRGAID----------CPETK 786
Query: 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE 761
G + ++VD++ + + L+ + + ++S +DA L + + D IL+
Sbjct: 787 GRRVLIVDDQESARQIMRQLLHHCRYITEEAASGEDAIELV---LAAEKRGESFDFILL- 842
Query: 762 KDCWISGEDSGFNA--QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMK 819
D + G +G +L + G + + IL+ + +++E D K G + K
Sbjct: 843 -DWMMPGGMNGSQTCRELERLRRQGKLQQTRPPILMVSAYAREEIDLPK--GLIADYLAK 899
Query: 820 PLRASMIAACLQQVLSTENKRQAGRGVPNGS-SFHQGLLRGKKILVVDDNGVNRMVAAGA 878
PL AS + L Q + G G+ S S L+G+++L+V+DN +N+ VA
Sbjct: 900 PLTASSLYDALVQA-------EGGAGLVRPSPSLQVPDLQGRRLLLVEDNEINQEVATQL 952
Query: 879 LKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
LKK GA V A + AL ++++ + MD+QMP MDGFEATR +R
Sbjct: 953 LKKTGARVRTAENGAEALKEVRA-EAPELILMDLQMPVMDGFEATRTLR----------- 1000
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
DG PI+A++A V+ + G+D ++ KP E +LY L
Sbjct: 1001 --AEGYDG---------PIIALSAAVMDDDRRRAREAGVDDHLGKPIESADLYAALVAHL 1049
Query: 999 KSK 1001
+K
Sbjct: 1050 DAK 1052
>gi|254411490|ref|ZP_05025267.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181991|gb|EDX76978.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1342
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 182/655 (27%), Positives = 298/655 (45%), Gaps = 115/655 (17%)
Query: 349 YILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL 408
Y G IV D +++ E + A A KS+FLA +SHEIRTPMNG+LGM+ LLL
Sbjct: 633 YTSNGQVGGIVIATDQINELVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLL 692
Query: 409 DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLF 468
T L+S QRDYAQT + L+ +IN++LD +K+EA ++ELE + F+L ++ VL +
Sbjct: 693 QTQLTSRQRDYAQTIRRSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVL 752
Query: 469 SEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+ ++ K +ELA V KVP + GDP R RQ++ NL N++KFT +G + + V L T
Sbjct: 753 ATQAEAKNLELATLVDRKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETAT 812
Query: 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNAS 588
+K+ TL ++ GV S GQ +K FQS +
Sbjct: 813 -----SKNATLHFAVSDTGVGISPEGQ----------------EKL--------FQSFSQ 843
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+ N G TG+G+ +I
Sbjct: 844 VDNSTTRQYGG-----------TGLGL------------------------------AIC 862
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K LV+LM G+I S+ GSTF FTA F+ ++S P LK +VV
Sbjct: 863 KQLVDLMGGEIGVESQVGKGSTFWFTA--------KFDTQTNAESPTTPFALTHLKLLVV 914
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWIS 767
E +Y +N GI + ++S + + + L + QP D+++ D +
Sbjct: 915 SESRTTRQSVRYLVNTWGIGIDEANS----AELSLDALRQAASLDQPYDVVIC--DWQLP 968
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA---- 823
+ G L+ + K +++ +D+ ++ + G A + ++KP+RA
Sbjct: 969 QIEDG---SLIKTIRSDSALSHTKAVVMTPMNQRDQVEQLLSVGAA-SYLLKPVRASRLF 1024
Query: 824 -SMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
S++AA +++ + + + + G H+ IL+ +D+ +N+ V L+
Sbjct: 1025 DSLMAAVAPEMIKEQQEEELAQHTTTGDFPHKQPATPLNILLAEDHPINQQVILNQLQML 1084
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G +CA + + L+ ++ + +D MD QMP +DG+ T ++ + GS
Sbjct: 1085 GYEADCAPNGQVVLELVEQ-NSYDIILMDCQMPVLDGYATTTKL----------IERYGS 1133
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ H I+A+TA + C GMD Y+SKP +EE L L +
Sbjct: 1134 T----------HPVIIALTAHAFPEDRERCSAVGMDDYISKPVDEEMLSERLEYW 1178
>gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
Length = 1165
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 193/676 (28%), Positives = 298/676 (44%), Gaps = 151/676 (22%)
Query: 344 GLLVGYILYGAAIHIVK-VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILG 402
G L+G + G I + K VED M K AE A AK+ FLA +SHEIRTPMN I+G
Sbjct: 409 GQLLGLVGTGRDITVRKEVED---AMARAKALAEQAAQAKADFLANMSHEIRTPMNAIIG 465
Query: 403 MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILD 462
M L L TDL QRDY Q G+ L+ +IN++LD +KIEA K+ +E + F+L +LD
Sbjct: 466 MSHLALKTDLDPRQRDYLNKIQQAGQHLLGVINDILDFSKIEAGKVRVECIEFDLEQVLD 525
Query: 463 DVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
++ +L +K+ KG+EL +F D Q+ L+G+ ++ G I +
Sbjct: 526 NLANLIGDKAAGKGLEL-LFRRDA-------------QVPCVLLGDPLRL---GQILINY 568
Query: 523 HLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEG 582
V + G+ LE DG+ W
Sbjct: 569 ---------------------ANNAVKFTEHGEVEVSIELEKRDGKQVW----------- 596
Query: 583 FQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
L+ V DTGIG+ + Q R+F F QADSST+R YGGTG
Sbjct: 597 ---------------------LLFSVRDTGIGLSPAQQARLFESFQQADSSTTRRYGGTG 635
Query: 643 IGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG 702
+GL+I K L E M G++ S GS F C+ +Q + +G
Sbjct: 636 LGLAICKRLAEAMGGEVGVDSELGRGSRFW-------CRLPFALGDRQRAALQPQADLRG 688
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762
+ +VVD+ + N ++ +M + S A +GL + + L+E+
Sbjct: 689 RRVLVVDD----------NANARLVLSEMLRGMTFRVSEAADGLQA--------LALLEQ 730
Query: 763 DCWISGEDSGFNAQLLDWKPNG--------HVFKL-----PKLILLATNISKDECDKAKA 809
F +DW+ G V L PK+++++ + +D A+
Sbjct: 731 ---AQAAGDAFELLFIDWQMPGIDGLELARRVRALALSPQPKVLMVSAHGREDLLQGARR 787
Query: 810 GGFADTVIMKPLRASMIAACLQQVL-----STENKRQAGRGVPNGSSFHQGLLRGKKILV 864
G D V++KPL S++ + L S AG G+P+ G+++L+
Sbjct: 788 MGVED-VLLKPLNPSLLFDVAMRCLDGRADSGHAHGAAGTGIPD--------FAGRRVLL 838
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP--HCFDACFMDIQMPEMDGFEA 922
V+DN +N+ VA+ L++ G V+ A + + A+ +LQ+ + MD+QMP +DG A
Sbjct: 839 VEDNALNQEVASALLQEAGLQVDVAGNGQQAIARLQAAADDHYQLVLMDMQMPVLDGLAA 898
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
TR +R A LPI+AMTA+ + CL GM+ ++S
Sbjct: 899 TRLLRAQARFA--------------------ALPIVAMTANALADDRQACLAAGMNDHLS 938
Query: 983 KPFEEENLYRELAKFF 998
KP E L+ L ++
Sbjct: 939 KPIEPTALWSTLMRWL 954
>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
Length = 760
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 181/652 (27%), Positives = 312/652 (47%), Gaps = 117/652 (17%)
Query: 361 VEDDFHK-------MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS 413
+ED F + +++ + A+ A+ AKS+FLA +SHEIRTPMNG++GM L+L+TDL
Sbjct: 212 LEDTFEERDEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLD 271
Query: 414 STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSR 473
Q+ YA+T G AL+ +IN++L+ +KIEA K+EL+ FNL+ ++DV++L S K+
Sbjct: 272 DDQKMYAETISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAA 331
Query: 474 NKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTD 533
K +E+ + +PEF GD GR RQI+TN+ GN+VKFT G+++++V
Sbjct: 332 EKNVEVTLRYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAGYVYIEV----------- 380
Query: 534 AKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMM 593
+G T G +T +G+ A D+ + +A A+ N
Sbjct: 381 -------SGHTAGGYSDLRISVKDTGTGIPA-------DQLNSIFNAFEQVDGAATRNF- 425
Query: 594 ASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVE 653
E TG+G+ +S +R G G +S++ L E
Sbjct: 426 ---------------EGTGLGLAIS----------------TRLLGMMGGTVSVTSVLGE 454
Query: 654 LMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV 713
GSTF+ K +E+ +Q + +++ +GL +VVD+ +
Sbjct: 455 --------------GSTFTVELPL-KVREHQ----RQPRVDEV--SLEGLNVLVVDDLEL 493
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF 773
+ L+ G+ + ++ + + L + + DIIL +D + G D
Sbjct: 494 NRIILNERLDTWGV---NTVAVASGDAALETLLDARHEGRSFDIIL--QDFQMPGMDGHE 548
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
A+ + P LP +IL + + D+ + + G V +KP+RAS + A + +
Sbjct: 549 LARRIRDIP--EYVDLPIVILSSVENTIDQYTRERLGRC--EVALKPVRASQLRAVMSKA 604
Query: 834 LSTENKRQAGR--GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L+ + + G+ G++ Q L K+L+ +DN N++V LK V A++
Sbjct: 605 LNGGSPARPGKLSTAARGAAPAQPQL---KLLLAEDNKTNQLVVTRMLKSAPIEVIVASN 661
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+ A+D ++ H D MD+ MP+ DG EAT IR +E A R+
Sbjct: 662 GEDAVDLFKA-HRPDIVLMDMMMPQKDGIEATGDIRALE-----------------ASRN 703
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
P++A+TA+ + + ++CL GMD ++SKP +++ L + K+ P+
Sbjct: 704 WPRCPVVALTANALQSHKEQCLAAGMDDFLSKPIKKQELLDAVTKWVDVDPV 755
>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region, ATPase-like:histidine
kinase, HAMP region:histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
Length = 923
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 195/654 (29%), Positives = 303/654 (46%), Gaps = 136/654 (20%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VE +++ K AEA AKS+FLAT+SHEIRTPMNG+LGM LLL T+L TQR +
Sbjct: 249 VEQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLLGTELEPTQRQFV 308
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
+ + GK L+ +IN++LD +KIEA KLEL+ V F+LR +L++ L LFS+ +R KG+EL
Sbjct: 309 EAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLEL- 367
Query: 481 VFVSDKVPE---FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
V+D P+ V GDP R RQI+TNL+GN+VKFTE G I +++ + E
Sbjct: 368 --VADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPR--------- 416
Query: 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
+ G + + S TG L E F+H + A+G + G
Sbjct: 417 ---DNGLKLALVVSDTGIGIPLDAQEKI--------FEHFLQADGSTTR--------KYG 457
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G TG+G L+I + LV++M G
Sbjct: 458 G------------TGLG------------------------------LAICRHLVDMMGG 475
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I S P G+ F+ K V KQ+ LP G + +VVD+ + V
Sbjct: 476 RIHVESTPGKGAAFTVELDLPLGKLPVASPEKQA----LPA--TGARVLVVDDSSTQREV 529
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
L G + + ++S S + L ++ ++ +P +L+ + Q+
Sbjct: 530 LLALLRGRGFIAEGAAS----SLAGLSVLKAAVEEGEPYALLL------------IDTQM 573
Query: 778 LDWKPNGHVFKL---------PKLILLATNISKDECDKAKAGGFADTVIM-KPLRASMIA 827
D P V + ++I+++ + D KA+ + KP+R A
Sbjct: 574 PDL-PGCDVVRALRADQNLAPTRVIIISAQV--DALSKAERASLQIAACLPKPVRQ---A 627
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
L+ + +T +R S + LRG ++LV +DN N +VA L++ G V
Sbjct: 628 ELLRAIETTLQRRSVSDTAVIDSPARK--LRG-RVLVAEDNESNLVVARAQLERMGLEVI 684
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A+ + ALD L + D MD QMP +DGF AT +R+ E+ +
Sbjct: 685 AASDGQQALDIL-AEETVDLVLMDCQMPVLDGFAATMALREREAVSGR------------ 731
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
HLP++A+TA+ + + C GMD Y++KP+ E L LA++ ++
Sbjct: 732 ------HLPVIALTANAMKGDRERCKDAGMDEYLAKPYSGEELLTLLARWLPAE 779
>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
Length = 1323
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 196/645 (30%), Positives = 282/645 (43%), Gaps = 143/645 (22%)
Query: 369 QELKVRAEAADV---AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
QEL+ +AAD AK FLA +SHEIRTPMN ILGM L L+T L +TQR Y
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTKLDTTQRKYVTRINE 650
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
K L+ +INE+LD +KIEA KL +E + FNL DDVL N +++ +
Sbjct: 651 SAKNLLGIINEILDFSKIEAGKLNVERIDFNL----DDVLD-------NVTAVISLKAQE 699
Query: 486 KVPEFVLG-DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
K EF++ DP I L+G+ ++ G + V
Sbjct: 700 KGIEFLMDIDP----HIPLGLIGDPLRL---GQVIV------------------------ 728
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
+C + KF H +I S + VTL
Sbjct: 729 --NLCGNAV-------------------KFTH--------QGEIVITARVSQLNDQYVTL 759
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
V+DTGIGI +F F QADSS +R YGGTG+GLSISK LVELM GQIS S
Sbjct: 760 GFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISVRST 819
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL---KAVVVDEKPVRAAVTQYH 721
GS F F+ V G ++++K D+ GL + +VVD+
Sbjct: 820 EGEGSIFEFSVVCG---------LQEAKMRDIAQPVHGLADKRVLVVDDND--------- 861
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTS----SEDKFQPDIILVEKDCWISGEDSGFNAQL 777
+ I+ + ++++ T NG + KF D++ V+ + G N
Sbjct: 862 -SARNILDSLLTAMRFNVVTVSNGFEALSEIQHKKF--DMLFVDWNM------PGMNGIE 912
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
L + + L T +D + G D +I+KP+ S + + E
Sbjct: 913 LLTRVQSLGLREKTKCFLVTAYGRDINLDGENGKLVDALIVKPVNPSNLLDAIVTSYGIE 972
Query: 838 NKRQAG-----RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ R PN +GK +L+V+DN VN+ VA G L+ G V A +
Sbjct: 973 HVRHKHSEHHPHSKPN--------FKGKSVLLVEDNEVNQEVALGLLQDTGLRVTVANNG 1024
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ AL+K++ FD MD+QMP MDG AT+RIR A +
Sbjct: 1025 QEALEKIEQAR-FDLVLMDMQMPVMDGITATKRIR--------------------ADKRW 1063
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
LPI+AMTA+ + + C + GM+ ++SKP + + Y L +F
Sbjct: 1064 KDLPIVAMTANAMTVDIERCTQAGMNDHLSKPIDIDKFYSVLKQF 1108
>gi|428769506|ref|YP_007161296.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428683785|gb|AFZ53252.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1390
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 194/662 (29%), Positives = 307/662 (46%), Gaps = 107/662 (16%)
Query: 358 IVKVEDDFHKMQELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS 414
I + D QEL++ +AE A+ AKS+FLAT+SHEIRTPMN ++GM LLLDT L++
Sbjct: 687 ITDISDKIRAEQELQLAKEQAEKANQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLNN 746
Query: 415 TQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRN 474
QR++A+ + +L+ +IN++LD +KIE+ KLELE ++ ++++ L L + K+ N
Sbjct: 747 EQREFAEIIRTSADSLLTIINDILDFSKIESGKLELEYQPLSIINVIEESLDLLAPKAIN 806
Query: 475 KGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDA 534
KGIEL F++ +P+ ++GD R RQI+ NL+ N+VKFT G I V V ++ +++ +
Sbjct: 807 KGIELIYFIAPDIPKTIMGDVTRLRQILVNLLNNAVKFTNEGEIVVSVGVSRQSIKENIL 866
Query: 535 KDETLLN-GGTEEGVCRSGTGQ-FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
+ E + + T G+ S + F S ++A+ R+ G +I N
Sbjct: 867 EYELIFSVKDTGIGIPSSRMNKLFKPFSQVDASTTRH----------YGGTGLGLAICNR 916
Query: 593 MASNGGSEDVTLMVCVEDTGI---GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ + G + + VE G+ P S Q +SS S
Sbjct: 917 LVTMMGGQ-----IWVESKGVIAGDFPSS---------YQPNSSLS-------------- 948
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
+GS FSFT + K ++ S S L + ++VD
Sbjct: 949 ----------------DLGSIFSFT-INTKVSSWLVNQENPSYSHIL----QDKVILIVD 987
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+ + V + LG+ +++S ++A KN E K PD+ ++ D + G
Sbjct: 988 DNEINRQVLMIQCHNLGMKTIITASGREALLALKN-----EQK--PDLAVL--DMQMPGM 1038
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
D A+ + P H LP LILL++ I E K+ + KP++ S++
Sbjct: 1039 DGLTLAKQIRLLP--HCQNLP-LILLSS-IGSAEIQKSLQEVDWAATLTKPIKQSLLEDI 1094
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGL-------LRGKKILVVDDNGVNRMVAAGALKKF 882
V Q R P S + KIL+ +DN VN+ V LK+
Sbjct: 1095 FINVC------QENRNYPRLFSSSFSSPFEDIAGIAPLKILIAEDNIVNQKVITNILKRL 1148
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G + A+ ++ L +D MD+QMPEMDG ATR+IR + + N S
Sbjct: 1149 GYRADVVANGLEVMETLNR-QSYDLILMDVQMPEMDGLTATRQIRTLWNSPN-------S 1200
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+ G I+AMTA+ + + CL GMD Y+SKP E L +L K+ P
Sbjct: 1201 NFQGIPPY------IIAMTANAMEGDREICLAAGMDDYLSKPVRVEKLMEKLKNLRKTYP 1254
Query: 1003 LS 1004
S
Sbjct: 1255 NS 1256
>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
bacterium DG1235]
gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
bacterium DG1235]
Length = 1320
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 196/687 (28%), Positives = 303/687 (44%), Gaps = 156/687 (22%)
Query: 331 WTALTTAF--FLFVIGLLVGYILYGAAIHIVKVE----------DDFHKMQELKVR-AEA 377
W A T F F+ ++ L ++L A H ++E D+ + V+ A+
Sbjct: 750 WYAYLTYFLSFILIVSLFSKWLLSRARRHSAQLEKVVSERTRELDETNDELRASVKEAKK 809
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
A AKSQFLA +SHEIRTPMNG++GM LL DT LS+TQRDY T + + L+ +IN++
Sbjct: 810 AGQAKSQFLANMSHEIRTPMNGVMGMCTLLNDTQLSNTQRDYVSTIRSSSETLLTIINDI 869
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD +KIEA KL++E + F+L +++DVL LFS+ K ++L ++ V +GDP R
Sbjct: 870 LDFSKIEAGKLQIETIPFDLVDLVEDVLDLFSQHLEQKKLDLVHHIAASVSTQRIGDPTR 929
Query: 498 FRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFN 557
RQI+ NLVGN++KFT G I++ + D DE + V SG G
Sbjct: 930 IRQILVNLVGNAIKFTTSGDIYISIE-------SGDDPDEITIE------VRDSGIG--- 973
Query: 558 TLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617
D R D F+ ED ++ TG+G+ +
Sbjct: 974 -------IDQRKLNDLFQPF--------------------SQEDESITRKYGGTGLGLSI 1006
Query: 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677
S M A+ R + + IG VGS+F FT
Sbjct: 1007 SK--------MLAEIMHGRLWAESEIG----------------------VGSSFFFT--- 1033
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD 737
K V D + +E +P F+G + +V + P+ L I + S K+
Sbjct: 1034 --IKTPV--DKSSTNTEAIPENFRGKRILVCEPHPLNRHSLLETLRLWNIEPIEALSEKE 1089
Query: 738 ASST-AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD-WKPNGHVFKLPKLILL 795
A T AK+ + ++ F + ++ + +KLP ++L
Sbjct: 1090 ACKTLAKDHAIDA--------------LFLGANSDDFTKETIESIRSEAKRYKLPVVLLA 1135
Query: 796 ATNISKDECDKAKAGGFADTVIMKPLRASMI--AAC--LQQVLSTENKRQAGR---GVPN 848
++ + + K + ++ KPLR + A C + + +N +++ R +PN
Sbjct: 1136 SSKLKGEITYKPQVDALK--ILAKPLRRKQLKRALCFFFDKKTTVKNAKRSTRVLKKIPN 1193
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
S +ILVV+DN VN+ VA LK+ G ++ A + ++ + H +D
Sbjct: 1194 SKSL--------RILVVEDNPVNQKVARLLLKRLGFQIDLAGNGIEGVESVTRQH-YDIV 1244
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-----ILAMTAD 963
MD+QMPEMDG EATR+IR+ LHLP I AM+A
Sbjct: 1245 LMDVQMPEMDGLEATRQIRK------------------------LHLPDGQPAIFAMSAG 1280
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENL 990
V EC GM+G++ KP + E L
Sbjct: 1281 VSEYDKKECFDAGMNGFIPKPVKVETL 1307
>gi|333999458|ref|YP_004532070.1| sensory transduction histidine kinase [Treponema primitia ZAS-2]
gi|333740654|gb|AEF86144.1| sensory transduction histidine kinase [Treponema primitia ZAS-2]
Length = 1257
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 185/645 (28%), Positives = 287/645 (44%), Gaps = 150/645 (23%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT-DLSSTQRDYA-QTAQICGKALI 431
+A A AK FL+ +SHE+RTPMN I+GM ++ D+ ++DYA + L+
Sbjct: 584 QAVQASKAKGDFLSNMSHEMRTPMNAIIGMTSIGKSAPDIE--KKDYAFGKIEDASSHLL 641
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KLEL V F +L V+++ + + + V + +P +
Sbjct: 642 GVINDILDMSKIEANKLELSPVTFEFEKMLQKVVNVINFRIEQRQQSFYVTIDKMIPNSL 701
Query: 492 LGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR 550
+GD R Q+ITNL+ N+VKFT E+G I + H A G E G+C
Sbjct: 702 IGDDQRLAQVITNLLSNAVKFTPEQGTIRLNAHYA-----------------GEENGLC- 743
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
L +E D
Sbjct: 744 --------LMQIEVTD-------------------------------------------- 751
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
+GIGI Q R+F F QA+SST+R +GGTG+GL+ISK +VELM G+I S G+T
Sbjct: 752 SGIGISPEQQARLFTSFEQAESSTTRQFGGTGLGLAISKRIVELMGGKIWIESELGKGAT 811
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL---NRLGI 727
F+FT K DI+ D + +K + VD++ + + QY + G+
Sbjct: 812 FAFTVKMQKG------DIESKSFLDPGVNWSNVKILAVDDE---SEILQYFIGVAENFGV 862
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHV 786
++S ++A + K E G++ +DWK P +
Sbjct: 863 KCDVASGSEEALALIK-------------------------EKGGYDIYFIDWKMPGMNG 897
Query: 787 FKLPKLI-------LLATNISKDECD----KAKAGGFADTVIMKPLRASMIAACLQQVLS 835
+L K I + T IS E +AK+ G D I KPL S IA + + L
Sbjct: 898 MELSKRIKETGSGKSVVTMISGVEWSAIEGEAKSAG-VDKFIAKPLFPSAIADLINECLG 956
Query: 836 TENKRQAGRGVPNGSSFHQ-GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+N +P+ + Q G G +L+ +D +NR + L+ ++CA +
Sbjct: 957 VDNA-----AIPSDITEDQDGCFEGFHLLLAEDVEINREIVLTLLESTKLLIDCAENGAI 1011
Query: 895 ALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A+D ++P +D FMD+QMP+MDG+EATR IR M+ +
Sbjct: 1012 AVDMFRENPDKYDMIFMDVQMPQMDGYEATRTIRAMDFEKAR------------------ 1053
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA+V ++ L GM+ +V KP + + L K+
Sbjct: 1054 GIPIVAMTANVFREDIEKSLAAGMNDHVGKPLDFNEVIARLRKYL 1098
>gi|269139259|ref|YP_003295960.1| PAS/PAC domain-containing protein [Edwardsiella tarda EIB202]
gi|387867854|ref|YP_005699323.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
Length = 1520
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 192/643 (29%), Positives = 294/643 (45%), Gaps = 118/643 (18%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+Q K+ AE A+ AKS FLA +SHE+RTP+N ILGML LLL + L+ Q DYA ++
Sbjct: 750 LQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGLTHRQADYATKSEAAA 809
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+AL+ L+N++LD +KIEA K+ELE F+L +L D+ + S SR K +E+ + +
Sbjct: 810 RALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSSSSRQKPVEVLFDIDPSL 869
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P + LVG+S++ + V ++L + T+ + TL
Sbjct: 870 PHW--------------LVGDSLRLQQ-----VLINLGGNALKFTERGEVTLF------- 903
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
I ++A + + VTL
Sbjct: 904 ------------------------------------------IRLLAQD--QQTVTLHFG 919
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI Q +F F QA++S +R +GGTG+GLSIS+ V +M G + S P
Sbjct: 920 VRDTGIGIAPEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTLQVESEPGK 979
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F FT D QS+ L GL ++VD+ P + Q LG
Sbjct: 980 GSLFHFTLTLPLAAADAHPD-DQSQRLTL----AGLHVLMVDDNPTACTLLQRMGTTLGW 1034
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHV 786
V + S + A + + D++ V D + G D Q L + P+
Sbjct: 1035 EVDTAGSGEQALARIAEQQRAGTHY---DVMFV--DWLMPGLDGWQTIQRLHQQIPDT-- 1087
Query: 787 FKLPKLILLATNISKDEC---DKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
+P L+++ N +C ++ G D ++KP+ ++ L+ VLS + RQ
Sbjct: 1088 -SMPLLVMVTAN--DRDCLLQRSSEEQGVLDGFLVKPVTPQIL---LETVLSALHARQES 1141
Query: 844 R----GVPNGSSFHQG-LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+P + G L G +ILVV+DN N+ +A L+ GA++ AA + A+D+
Sbjct: 1142 SQQAIALPAPRARATGKQLSGVRILVVEDNLNNQQIARELLEDEGASITLAAQGQEAVDR 1201
Query: 899 LQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L+ SP FD MD+QMP MDG AT+ IR+ + LPI
Sbjct: 1202 LRASPQGFDLVLMDLQMPVMDGINATQYIRRHLGLRS--------------------LPI 1241
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+AMTA+ + + ECL GM+ ++ KPF L + K +
Sbjct: 1242 IAMTANAMASDRQECLAAGMNDHIGKPFNLRELIHAIQKHLPT 1284
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 23/231 (9%)
Query: 85 QFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAEYTTRTAFER--PLLSGVAYAPRVVD 142
+F + + A++ L +T+H + D F++Y R P + G+ + RV
Sbjct: 63 RFTQPLYGLSAVSGLYTTYH------QVSYDQFSDYVRALDLPREYPGVRGIGFIQRVAR 116
Query: 143 AQREQFERQHGM--TITTMKSEPSPIRDEYAPVMFYQEPMSHVKS---LDMMSGEEDREN 197
A +F +Q + I + P RD ++ Y +P++ ++ LD+ S
Sbjct: 117 ADLSRFVQQARIDDKIDFTPHQIQPQRDPELYLVKYVQPLTPNQAALGLDLRSEAVRWAG 176
Query: 198 ILRARATGKAVLTRPFRLL--GSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPF 255
+ +A +G LT L+ G +L PVY T E+R A G I P
Sbjct: 177 LQQAIDSGLPTLTGHIHLVQDSKQQPGALLYLPVYAVDAALLQTPEQRRAALLGVIYSPL 236
Query: 256 DVESLVENLLGQLAGNQAILVNVYDMTNA--SDPLIMYGDQNQDGDMSLLH 304
+ L+ N+ +G + + +YD SD LI + DG L H
Sbjct: 237 VIADLLNNIPEYASGR--VDIELYDTRGEMNSDNLIF----DADGSKRLQH 281
>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1233
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 186/628 (29%), Positives = 284/628 (45%), Gaps = 109/628 (17%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K AEAA AK FLA +SHEIRTPMNGI+GM L LDT+L+S QR+Y Q
Sbjct: 589 LRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALDTELNSEQREYLGLVQSSA 648
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ ++N++LD +KIE+ KL++E + F+L +L + + + ++ K +EL + V+ V
Sbjct: 649 DALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLAVRAHQKQLELLLHVAPDV 708
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P+ +LGDPGR RQ+I NLVGN++KFT G I V V + G EG
Sbjct: 709 PDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDVQCLK----------------GAPEG 752
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGF-QSNASIINMMASNGGSEDVTLMV 606
R +T G+ + DKF+ + E F Q++ S GG
Sbjct: 753 QMRMQFSVRDTGIGI-------ARDKFQTIF--ESFSQADTSTTRRY---GG-------- 792
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +SAQ LV LM G I+ S
Sbjct: 793 ----TGLGLTISAQ------------------------------LVSLMGGSIALESEVG 818
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F FT + +Q+ G+ ++ D+ + Q L
Sbjct: 819 QGSNFYFTLDMPMLSVSPLAEYQQTGR------IAGMTVLIADDNATNRRLLQEMLTNW- 871
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
KM + A + L + P L D + D A+ + P
Sbjct: 872 ---KMHPVVTSNGQEALDELARATASGHP-YGLALLDLQMPDMDGFELAEHIREHPE--- 924
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
+ + L++L + + + + G A +MKP+ S + + L + R
Sbjct: 925 YLVKTLMMLTSEGQRGHASRCRELGVA-AYLMKPIAQSELFDAIMTALGVSEQPLTTR-- 981
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
S + + R +L+ +DN VN+ +A L K G TV A + A+ Q+ FD
Sbjct: 982 ---HSLKE-MRRRLNLLLAEDNAVNQTLATRLLTKLGHTVTVANNGIEAVQLWQNG-SFD 1036
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
A MD+ MPEM+G++ATR IR+ EQ + G+ H+ I+AMTA +
Sbjct: 1037 AILMDVDMPEMNGYDATRCIRE-----QEQQLGVGA-----------HIRIVAMTAHAMQ 1080
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYREL 994
+ECL GMDGY++KP + E L++EL
Sbjct: 1081 GAREECLLNGMDGYLTKPIDTEALWQEL 1108
>gi|424882919|ref|ZP_18306551.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392519282|gb|EIW44014.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 1131
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 189/648 (29%), Positives = 293/648 (45%), Gaps = 126/648 (19%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 582 ELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 641
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 642 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 701
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQI+TNLVGN+ V ER V D
Sbjct: 702 LPAAVIGDAGRFRQIVTNLVGNA------------VKFTERGHVFVDV------------ 737
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
GFQ A GG ++ +
Sbjct: 738 -----------------------------------GFQPAA---------GG--EIMASI 751
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
+EDTGIGIP E VF F Q D+S++R + GTG+GL+I+ LV+L G I+ S
Sbjct: 752 RIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYINVESEWG 811
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F + + + LP +G + +VVD+ V + L+ G
Sbjct: 812 KGSVFTINLPFAVAAARL-------EPKPLPINVQGARILVVDDNDVNRRILTEQLSLWG 864
Query: 727 I--MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
+ A A GL + D D + + ++G D A+ L P
Sbjct: 865 FDGVAAEGGGTGLAILEAAAGLGVTVDAVVLDYHMPD----MNGADV---ARRLRADP-- 915
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA-- 842
+LP + L + +IS E + A G A +MKP RA+++ + +V+ +Q
Sbjct: 916 RFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVVRASRVKQVSE 973
Query: 843 ---GRGVPNGSSFHQGLLRGKK------ILVVDDNGVNRMVAAGALKKFGAT---VECAA 890
R + K+ +LV +DN VN++V L+ G + V+
Sbjct: 974 AEIARLQTEAIVPAPPPVPQKRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVDNGE 1033
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
A AA ++ +P MD+ MP M+G +AT+ IR+ E + +
Sbjct: 1034 EAVAAWERY-TPRI---IMMDVSMPVMNGHQATQMIREREKEQGHR-------------- 1075
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+ +TA + + + CL GMD Y+SKP E L ++ ++
Sbjct: 1076 ----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWL 1119
>gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72]
gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72]
Length = 1012
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 179/644 (27%), Positives = 288/644 (44%), Gaps = 119/644 (18%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VE ++ A+ A AKS FLA +SHEIRTPMN ++G+ L L T+LS QRDY
Sbjct: 257 VEQRTRQLSIATAEAQQASRAKSDFLARMSHEIRTPMNAVIGLTHLALRTELSPQQRDYL 316
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
+ + +AL+ +IN++LD +KIEA KL LE + F L ++D++ ++ + K+ KG+++
Sbjct: 317 RKIRGSSQALLGIINDILDFSKIEAGKLRLEQIPFTLHDVIDNLSNIVTVKAAEKGLDVL 376
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
+ + +P+ + GDP R QI+ NL N+VKFTERG + V L ++T
Sbjct: 377 LAIDPAIPDRMRGDPLRLSQILINLGTNAVKFTERGEVVVDCRLIDKT------------ 424
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
E R +T G+ AA + F Q++ SI GG
Sbjct: 425 -----EDCVRVRFSVTDTGIGISAAQRGLLFQSF--------HQADGSITRRF---GG-- 466
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
TG+G+ +S Q L+E+M G +
Sbjct: 467 ----------TGLGLAISKQ------------------------------LIEIMEGSLE 486
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S P GSTFSF FG + + P + +VVD+ P A+
Sbjct: 487 VASEPGEGSTFSFVIPFGTVAG------ARERHYLAPEELRHKPILVVDDNPTARAM--- 537
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L M++ + D +++ + + + + +V D + G D A+ +
Sbjct: 538 ----LRTMIEHFHFVADTAASGEEAILKIREAGEQGYAVVLMDRDMPGLDGIEAARRI-- 591
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
K + + P+++L+A+ +A G D ++ KP+ S++ L +VL
Sbjct: 592 KLDLSLPTPPRILLMASYTKDHALQEAGHGAGLDGILTKPVGPSLLFNSLLKVLG----- 646
Query: 841 QAGRGVPNGSSFH----QGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
A R P F QGL +RG ++L+V+DN +N+ VA L++ G V+ A
Sbjct: 647 HAHRVEPEEPLFADQPTQGLAGIRGARVLLVEDNPINQQVATEFLRQAGLQVDLAGDGYE 706
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
+D+ + +D MD+QMP MDG EATRRIR +S H
Sbjct: 707 GVDRAVAT-AYDLILMDVQMPGMDGLEATRRIRARDS----------------------H 743
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
PI+AMTA + + GM+G+++KP + L L ++
Sbjct: 744 TPIVAMTAHALDTDRERSRAAGMNGHLTKPIDPAELETTLVRWI 787
>gi|444375763|ref|ZP_21175016.1| multi-sensor hybrid histidine kinase [Enterovibrio sp. AK16]
gi|443680266|gb|ELT86913.1| multi-sensor hybrid histidine kinase [Enterovibrio sp. AK16]
Length = 1338
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 189/631 (29%), Positives = 299/631 (47%), Gaps = 115/631 (18%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +A A AK +FLA +SHEIRTPMN ILGM L L TDL+ QR+Y + GK+L+
Sbjct: 586 KDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDLNDKQRNYVGNIEKAGKSLL 645
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL +E + F +LD++ ++ S K++ K +EL + +P+ +
Sbjct: 646 GIINDILDFSKIEAGKLTVEHIEFRFSEVLDNISNIISVKAKEKDLELIFDIDPDLPDDL 705
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA----ERTMVKTDAKDETLLNGGTEEG 547
+GDP R QII NL GNSVKFTE G I ++ E V+ D +D + G +EE
Sbjct: 706 VGDPLRLGQIIINLTGNSVKFTETGEIIIRARKVSDANEIIEVQFDIQDSGI--GMSEEQ 763
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ R F + S Q++ SI GG
Sbjct: 764 LGR----LFQSFS-----------------------QADGSITR---KYGG--------- 784
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
TG+G+ +S + F+ M GG + VE S P
Sbjct: 785 ---TGLGLTIS---KSFVELM----------GG--------RIWVE---------SEPGK 811
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTFSFT G+ + + E + ++ + +VVD+ + L+ L +
Sbjct: 812 GSTFSFTIRCGRSESSIKEQVARTTI------LHDKRVLVVDDNQASRDIMYALLDNLDL 865
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE-KDCWISGEDSGFNAQLLDWKPNGHV 786
V S+ ++A ++ S D F D+++++ K I+G+++ Q+ D KP +
Sbjct: 866 RVAAVSNGEEAVYEVESA-DKSHDGF--DVVVMDWKMPGINGDEATL--QIRD-KP---L 916
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
K+PK+IL + + D ++KP+ S + L + E + A
Sbjct: 917 NKMPKVILASAYGEDSGLINEEVQKVFDASLVKPINPSSLFDALMEAFGREEMKLANCRE 976
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
+ G IL+V+DN +N+ VA G L++F T+E A + + ALD +Q FD
Sbjct: 977 AEKDETEEIDFTGLTILLVEDNMINQEVAKGILEQFNPTIEVADNGQVALDMVQEQQ-FD 1035
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
MD+QMP MDG ATR+IR++E+ A+ LPI+AMTA+ +
Sbjct: 1036 IVLMDMQMPVMDGLTATRKIREIEALAS--------------------LPIVAMTANAME 1075
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+C + GM+ +VSKP + L + + ++
Sbjct: 1076 RDVKQCKEAGMNDHVSKPIDVNELLKAIQRW 1106
>gi|421503274|ref|ZP_15950224.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
gi|400346067|gb|EJO94427.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
Length = 1162
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 193/676 (28%), Positives = 298/676 (44%), Gaps = 151/676 (22%)
Query: 344 GLLVGYILYGAAIHIVK-VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILG 402
G L+G + G I + K VED M K AE A AK+ FLA +SHEIRTPMN I+G
Sbjct: 406 GQLLGLVGTGRDITVRKEVED---AMARAKALAEQAAQAKADFLANMSHEIRTPMNAIIG 462
Query: 403 MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILD 462
M L L TDL QRDY Q G+ L+ +IN++LD +KIEA K+ +E + F+L +LD
Sbjct: 463 MSHLALKTDLDPRQRDYLNKIQQAGQHLLGVINDILDFSKIEAGKVRVECIEFDLEQVLD 522
Query: 463 DVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
++ +L +K+ KG+EL +F D Q+ L+G+ ++ G I +
Sbjct: 523 NLANLIGDKAAGKGLEL-LFRRDA-------------QVPCVLLGDPLRL---GQILINY 565
Query: 523 HLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEG 582
V + G+ LE DG+ W
Sbjct: 566 ---------------------ANNAVKFTEHGEVEVSIELEKRDGKQVW----------- 593
Query: 583 FQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
L+ V DTGIG+ + Q R+F F QADSST+R YGGTG
Sbjct: 594 ---------------------LLFSVRDTGIGLSPAQQARLFESFQQADSSTTRRYGGTG 632
Query: 643 IGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG 702
+GL+I K L E M G++ S GS F C+ +Q + +G
Sbjct: 633 LGLAICKRLAEAMGGEVGVDSELGRGSRFW-------CRLPFALGDRQRAALQPQADLRG 685
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762
+ +VVD+ + N ++ +M + S A +GL + + L+E+
Sbjct: 686 RRVLVVDD----------NANARLVLSEMLRGMTFRVSEAADGLQA--------LALLEQ 727
Query: 763 DCWISGEDSGFNAQLLDWKPNG--------HVFKL-----PKLILLATNISKDECDKAKA 809
F +DW+ G V L PK+++++ + +D A+
Sbjct: 728 ---AQAAGDAFELLFIDWQMPGIDGLELARRVRALALSPQPKVLMVSAHGREDLLQGARR 784
Query: 810 GGFADTVIMKPLRASMI----AACLQQVLSTENKRQA-GRGVPNGSSFHQGLLRGKKILV 864
G D V++KPL S++ CL + + A G+P+ G+++L+
Sbjct: 785 MGVED-VLLKPLNPSLLFDVAMRCLDGRADSGHAHGAVSTGIPD--------FAGRRVLL 835
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP--HCFDACFMDIQMPEMDGFEA 922
V+DN +N+ VA+ L++ G VE A + + A+ +LQ+ + MD+QMP +DG A
Sbjct: 836 VEDNALNQEVASALLQEAGLQVEVAGNGQQAIARLQAAADDHYQLVLMDMQMPVLDGLAA 895
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
TR +R A LPI+AMTA+ + CL GM+ ++S
Sbjct: 896 TRLLRAQARFA--------------------ALPIVAMTANALADDRQACLAAGMNDHLS 935
Query: 983 KPFEEENLYRELAKFF 998
KP E L+ L ++
Sbjct: 936 KPIEPTALWSTLMRWL 951
>gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella
amazonensis SB2B]
gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella
amazonensis SB2B]
Length = 1287
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 198/664 (29%), Positives = 303/664 (45%), Gaps = 136/664 (20%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
++GY+ G A + + ++ + + +A A AKS FLA +SHEIRTPMN +LG+L
Sbjct: 503 IMGYL--GIAYDLTEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQ 560
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
+ L T+L RDY + Q K+L+AL+N++LD +KIEA ++ELE F+L+ +L D+
Sbjct: 561 MTLQTELPPRPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMG 620
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525
S+ S + + K IEL V+ VP+ ++GD R RQI+ N++ N++KFTE+G I
Sbjct: 621 SILSSQVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDII------ 674
Query: 526 ERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGF-Q 584
T + D D+ + E + SG G N + I +GF Q
Sbjct: 675 --TRIDADLGDDGTCHLHIE--IQDSGIGMTNE----------------QQAIIFKGFSQ 714
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
+++SI GG TG+G+ ++ R + MQ +
Sbjct: 715 ADSSISR---RYGG------------TGLGLAIT---RELVHLMQGE------------- 743
Query: 645 LSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKG 702
I S P VGSTF+ G F+ K PG F G
Sbjct: 744 --------------IRVTSSPGVGSTFTIDVQLG------FDATKYR------PGARFSG 777
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE--DKFQPDIILV 760
++ ++V++ V L LG V + NGLT+ + ++ PD V
Sbjct: 778 VRVLLVEDNHTSRLVFSELLRDLGCEV----------TALNNGLTAMKTIERMAPDSFDV 827
Query: 761 EKDCW-ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECD---KAKAGGFADTV 816
W + G D +L W + I++ T S+ + K + F D
Sbjct: 828 LLADWQLPGLD---GLELASWIRHLDSLSRQPGIIIVTAFSQAMLEAQLKHREEEF-DAT 883
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAG--RGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
++KP+ M++ CLQ VL N +P S L G+++L+V+DN NR+V
Sbjct: 884 LIKPVTREMVSRCLQSVLERHNNDGLDMLSHLPLAPS-----LVGRRLLLVEDNATNRLV 938
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
A L + GA V A AL KL S FD MDIQMP MDG++ TR+IR N
Sbjct: 939 ATSLLGQLGAEVIEAVDGFQAL-KLLSRQQFDLVLMDIQMPGMDGYQTTRKIR------N 991
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
E M+ LPI+AMTA+ + C GM+ ++SKPFE + + +L
Sbjct: 992 ELMLT--------------DLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATKL 1037
Query: 995 AKFF 998
++
Sbjct: 1038 LQYL 1041
>gi|374996937|ref|YP_004972436.1| signal transduction histidine kinase [Desulfosporosinus orientis DSM
765]
gi|357215303|gb|AET69921.1| signal transduction histidine kinase [Desulfosporosinus orientis DSM
765]
Length = 1261
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 181/645 (28%), Positives = 291/645 (45%), Gaps = 146/645 (22%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKSQFLA +SHEIRTPMN I+G+ LL +DL +Q++Y + K L+ +I
Sbjct: 536 AEEASQAKSQFLANMSHEIRTPMNAIMGLAHLLAQSDLKESQQNYVAKIEGASKTLLRII 595
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N+VLD +KIEA KLE+E + FNL +L++V +L+S + KGI+L + VP+ ++GD
Sbjct: 596 NDVLDFSKIEAGKLEIENIKFNLDKVLENVANLYSISAAEKGIDLNFDTGEGVPDVLIGD 655
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLN---GGTEEGVCRS 551
P R Q+++NL+ N++KFT RG + V V V + DE L+ T G+ +
Sbjct: 656 PLRLEQVLSNLITNAIKFTNRGEVNVSVK------VLGENNDEVKLSFTVSDTGIGITKE 709
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
G+ F+ A+G +M GG T
Sbjct: 710 HIGRL-----------------FRAFTQADG--------SMTRKYGG------------T 732
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ +S Q LVELM G+IS S G++F
Sbjct: 733 GLGLTISKQ------------------------------LVELMNGEISVESVYGEGTSF 762
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
F F K D+K+ + P +G KA+++D + + L + V
Sbjct: 763 HFIVHFHKAL-----DLKKPSCSNY-PDLQGKKALIIDHNKTSLTILERMLRSFSLEV-- 814
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK----PNGHVF 787
T+ D F+ + + ++C F+ ++D+ P +
Sbjct: 815 ---------------TALNDPFEA-LERLHREC--------FDLLVIDFNLPELPGIEFY 850
Query: 788 K---------LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
K LPK I ++ + + K G + ++ KP+ S++ + L+
Sbjct: 851 KRIIANPDIALPKTIFVSAIGRETHYHQVKQLGVRNFLV-KPINQSLMFDAIMNALNGTA 909
Query: 839 KRQAGRGVPN--GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
Q G + + S H+G L K++LVV+DN +N++VA L++ G V A + + A+
Sbjct: 910 LHQ-GEVIHDEANSRKHRGELADKRVLVVEDNDINQLVAKDMLEQAGMLVSIANNGEEAI 968
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
K + F A MD+QMP MDG++AT +R+ S + LP
Sbjct: 969 -KYVHANKFAAVLMDVQMPVMDGYKATEILRKTYSSS--------------------ELP 1007
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA+ + + + GM+ Y+SKP + L+ L K+ K
Sbjct: 1008 IIAMTANALRGDRERSIAAGMNDYISKPIDPNRLFDTLEKWLLGK 1052
>gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|424808569|ref|ZP_18233966.1| hypothetical protein SX4_2564 [Vibrio mimicus SX-4]
gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|342324134|gb|EGU19916.1| hypothetical protein SX4_2564 [Vibrio mimicus SX-4]
Length = 1053
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 188/655 (28%), Positives = 290/655 (44%), Gaps = 139/655 (21%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ E K +AE A KS FLA +SHEIRTPMN I+GM L L T+L+ QRDY
Sbjct: 282 QELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHS 341
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
L+ +IN++LD +KIEA KL +E + F+L +L +V + +K+ +KG+EL +
Sbjct: 342 SATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPR 401
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
++P ++GDP R Q++ NLV N+VKFTE+G I V V + ER + LL ++
Sbjct: 402 EIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVGERQPGRI-----KLLFNVSD 456
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ + N ADG + K+ GG
Sbjct: 457 TGIGMTEKQTRNLFQAFTQADGSTTR-KY----------------------GG------- 486
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S R + M+ G+IS S+P
Sbjct: 487 -----TGLGLSIS---RRLVELME---------------------------GEISVTSKP 511
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG-LKAVVVDEKPVRAAVTQYHLNR 724
GS F+F A F D Q+ + + P G ++A++VD+ + Q L+
Sbjct: 512 DAGSCFTFNAWFDV-------DENQAPHQKVVPDVLGSIRALIVDDNDHAREILQDMLSM 564
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---K 781
L I TA NG+ + K + + FN +DW +
Sbjct: 565 LAI----------PPETAANGVEALR-KLEQGV----------ANGKPFNLVFMDWNMPE 603
Query: 782 PNG--------HVFKL---PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
NG H F PK++++ T KD+ + + + KP+ S + L
Sbjct: 604 MNGIETTRAIRHSFAAEHQPKVVIV-TAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLL 662
Query: 831 QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
L +K QA G +RG ++L+ +DN +N+ +A ++ V A
Sbjct: 663 VN-LFVGSKAQASVAARISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIAN 721
Query: 891 SAKAALD----KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
+ K ALD L++ FD FMD+QMP MDG+EA R IR
Sbjct: 722 NGKEALDHLAHSLETQQRFDIIFMDLQMPVMDGYEAARHIR------------------S 763
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
T + D+ P++AMTA + + CL GM+ +VSKP + + LYR +AK+ + K
Sbjct: 764 TPEHDD--TPLIAMTAHAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKWCEGK 816
>gi|449143379|ref|ZP_21774216.1| hypothetical protein D908_00459 [Vibrio mimicus CAIM 602]
gi|449080990|gb|EMB51887.1| hypothetical protein D908_00459 [Vibrio mimicus CAIM 602]
Length = 1053
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 188/655 (28%), Positives = 291/655 (44%), Gaps = 139/655 (21%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ E K +AE A KS FLA +SHEIRTPMN I+GM L L T+L+ QRDY
Sbjct: 282 QELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHS 341
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
L+ +IN++LD +KIEA KL +E + F+L +L +V + +K+ +KG+EL +
Sbjct: 342 SATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPR 401
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
++P ++GDP R Q++ NLV N+VKFTE+G I V V + ER + LL ++
Sbjct: 402 EIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVGERQPGRI-----KLLFNVSD 456
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ + N ADG + K+ GG
Sbjct: 457 TGIGMTEKQTRNLFQAFTQADGSTTR-KY----------------------GG------- 486
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S R + M+ G+IS S+P
Sbjct: 487 -----TGLGLSIS---RRLVELME---------------------------GEISVTSQP 511
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG-LKAVVVDEKPVRAAVTQYHLNR 724
+GS F+F A F D Q+ + + P G ++A++VD+ + Q L+
Sbjct: 512 DMGSCFTFNAWFDV-------DENQAPHQKVVPDVLGSIRALIVDDNDHAREILQDMLSM 564
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---K 781
L I TA NG+ + K + + FN +DW +
Sbjct: 565 LAI----------PPETAANGVEALR-KLEQGV----------ANGKPFNLVFMDWNMPE 603
Query: 782 PNG--------HVFKL---PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
NG H F PK++++ T KD+ + + + KP+ S + L
Sbjct: 604 MNGIETTRAIRHSFAAEHQPKVVIV-TAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLL 662
Query: 831 QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
L +K QA G +RG ++L+ +DN +N+ +A ++ V A
Sbjct: 663 VN-LFVGSKAQASVAARISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIAN 721
Query: 891 SAKAALD----KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
+ K ALD L++ FD FMD+QMP MDG+EA R IR
Sbjct: 722 NGKEALDHLAHSLETQQRFDIIFMDLQMPVMDGYEAARHIR------------------S 763
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
T + D+ P++AMTA + + CL GM+ +VSKP + + LYR +AK+ + K
Sbjct: 764 TPEHDD--TPLIAMTAHAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKWCEGK 816
>gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
Length = 1053
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 188/655 (28%), Positives = 290/655 (44%), Gaps = 139/655 (21%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ E K +AE A KS FLA +SHEIRTPMN I+GM L L T+L+ QRDY
Sbjct: 282 QELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHS 341
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
L+ +IN++LD +KIEA KL +E + F+L +L +V + +K+ +KG+EL +
Sbjct: 342 SATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPR 401
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
++P ++GDP R Q++ NLV N+VKFTE+G I V V + ER + LL ++
Sbjct: 402 EIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVGERQPGRI-----KLLFNVSD 456
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ + N ADG + K+ GG
Sbjct: 457 TGIGMTEKQTRNLFQAFTQADGSTTR-KY----------------------GG------- 486
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S R + M+ G+IS S+P
Sbjct: 487 -----TGLGLSIS---RRLVELME---------------------------GEISVTSKP 511
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG-LKAVVVDEKPVRAAVTQYHLNR 724
GS F+F A F D Q+ + + P G ++A++VD+ + Q L+
Sbjct: 512 DAGSCFTFNAWFDV-------DENQAPHQKVVPDVLGSIRALIVDDNDHAREILQDMLSM 564
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---K 781
L I TA NG+ + K + + FN +DW +
Sbjct: 565 LAI----------PPETAANGVEALR-KLEQGV----------ANGKPFNLVFMDWNMPE 603
Query: 782 PNG--------HVFKL---PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
NG H F PK++++ T KD+ + + + KP+ S + L
Sbjct: 604 MNGIETTRAIRHSFAAEHQPKVVIV-TAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLL 662
Query: 831 QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
L +K QA G +RG ++L+ +DN +N+ +A ++ V A
Sbjct: 663 VN-LFVGSKAQASVAARISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIAN 721
Query: 891 SAKAALD----KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
+ K ALD L++ FD FMD+QMP MDG+EA R IR
Sbjct: 722 NGKEALDHLAHSLETQQRFDIIFMDLQMPVMDGYEAARHIR------------------S 763
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
T + D+ P++AMTA + + CL GM+ +VSKP + + LYR +AK+ + K
Sbjct: 764 TPEHDD--TPLIAMTAHAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKWCEGK 816
>gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
mimicus VM603]
gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
mimicus VM603]
Length = 1053
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 188/654 (28%), Positives = 290/654 (44%), Gaps = 139/654 (21%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ E K +AE A KS FLA +SHEIRTPMN I+GM L L T+L+ QRDY
Sbjct: 283 ELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSS 342
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L+ +IN++LD +KIEA KL +E + F+L +L +V + +K+ +KG+EL + +
Sbjct: 343 ATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPRE 402
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P ++GDP R Q++ NLV N+VKFTE+G I V V + ER + LL ++
Sbjct: 403 IPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVGERQPGRI-----KLLFNVSDT 457
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ + N ADG + K+ GG
Sbjct: 458 GIGMTEKQTRNLFQAFTQADGSTTR-KY----------------------GG-------- 486
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S R + M+ G+IS S+P
Sbjct: 487 ----TGLGLSIS---RRLVELME---------------------------GEISVTSKPD 512
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG-LKAVVVDEKPVRAAVTQYHLNRL 725
GS F+F A F D Q+ + + P G ++A++VD+ + Q L+ L
Sbjct: 513 AGSCFTFNAWFDV-------DENQAPHQKVVPDVLGSIRALIVDDNDHAREILQDMLSML 565
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---KP 782
I TA NG+ + K + + FN +DW +
Sbjct: 566 AI----------PPETAANGVEALR-KLEQGV----------ANGKPFNLVFMDWNMPEM 604
Query: 783 NG--------HVFKL---PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
NG H F PK++++ T KD+ + + + KP+ S + L
Sbjct: 605 NGIETTRAIRHSFAAEHQPKVVIV-TAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLLV 663
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L +K QA G +RG ++L+ +DN +N+ +A ++ V A +
Sbjct: 664 N-LFVGSKAQASVAARISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIANN 722
Query: 892 AKAALD----KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
K ALD L++ FD FMD+QMP MDG+EA R IR T
Sbjct: 723 GKEALDHLAHSLETQQRFDIIFMDLQMPVMDGYEAARHIR------------------ST 764
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ D+ P++AMTA + + CL GM+ +VSKP + + LYR +AK+ + K
Sbjct: 765 PEHDD--TPLIAMTAHAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKWCEGK 816
>gi|336126078|ref|YP_004578034.1| GacS/BarA family sensor protein [Vibrio anguillarum 775]
gi|335343795|gb|AEH35077.1| GacS/BarA family sensor protein [Vibrio anguillarum 775]
Length = 1320
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 188/636 (29%), Positives = 289/636 (45%), Gaps = 118/636 (18%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++E K A+A AK FLA +SHEIRTPMN ILGM L L+T+L+ TQ+ Y
Sbjct: 592 QLREAKETADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELNPTQQKYISRINES 651
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
K L+ +IN++LD +KIEA KL +E + F+L +LD++ +L S K++ K IE + +
Sbjct: 652 AKNLLGIINDILDFSKIEAGKLNVEHIDFSLDEVLDNLTTLISLKAQEKNIEFLLDIDPH 711
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P ++GDP R Q++ NL GN+VKFTE+G I V + R + + DA + TL ++
Sbjct: 712 IPVGLVGDPLRLGQVLVNLCGNAVKFTEQGEIIV----SARVVGQNDA-NVTLKFTVSDT 766
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ + + S AD ++ GG
Sbjct: 767 GIGIAESNVATLFSAFSQADN-----------------------SITRQYGG-------- 795
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S Q LV LM G I S
Sbjct: 796 ----TGLGLSISKQ------------------------------LVGLMGGDIQVHSEEG 821
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTF FT G +E DI + S G +A+VVD+ + LN +
Sbjct: 822 SGSTFEFTVECG-LQEAKMRDIAKPLS-----ALAGKRALVVDDNDSARNILMTLLNAMH 875
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA-QLLD-WKPNG 784
K S+ +A +N D++ ++ + G N +LL KP G
Sbjct: 876 FEAKSVSNGFEALDEIRNT--------HFDMLFIDWNM------PGMNGIELLQRMKPLG 921
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
VF K L+ T ++ + D +I+KP+ S + + E RQ+
Sbjct: 922 -VFDNTKRFLV-TAYGREISLVGENSKLVDALIVKPVNPSNLLDAIMDSYGIEQLRQSHE 979
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
+ + + + G+K+L+V+DN VN+ VA G L+ ++ A + + AL LQ
Sbjct: 980 YLDHDT---RPTFIGQKVLLVEDNEVNQEVAFGLLESTQLSIVLANNGQEALTTLQQ-EA 1035
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
FD MD+QMP MDG AT+ IRQ E LPI+AMTA+
Sbjct: 1036 FDLVLMDMQMPIMDGISATKEIRQHEEWKT--------------------LPIVAMTANA 1075
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ + + CL GM+ +V+KP + + LY+ L K+ K+
Sbjct: 1076 MSSDVEHCLNAGMNDHVAKPIDVQRLYQVLRKYLKA 1111
>gi|389578386|ref|ZP_10168413.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
gi|389400021|gb|EIM62243.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
Length = 1630
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 195/644 (30%), Positives = 304/644 (47%), Gaps = 127/644 (19%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS+FLA +SHEIRTPMNGI+GM LLLDTDLS QR + + AL+ LI
Sbjct: 954 AEMATRAKSEFLANMSHEIRTPMNGIIGMTGLLLDTDLSDEQRLFTGNVKASADALLTLI 1013
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++E + F LR LDD + + K+ K +EL VS +VP + GD
Sbjct: 1014 NDILDFSKIEAGKLDMEILDFELRPFLDDFAHMMALKAHEKDLELICEVSPEVPGQLQGD 1073
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
PGR RQI+TNL N++KFT G + ++ HL +T K+E L+ ++ +G G
Sbjct: 1074 PGRLRQILTNLTDNAIKFTNAGEVVIQAHLKHQT------KEEVLIYFSVKD----TGVG 1123
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
+ +K HL + + Q +ASI GG TG+G
Sbjct: 1124 I--------------APEKQGHLFE-QFTQVDASITR---KYGG------------TGLG 1153
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV----------SR 664
+ +S K L +LM G I + SR
Sbjct: 1154 LAIS------------------------------KKLAQLMGGDIGVISPVPEINKLASR 1183
Query: 665 P----QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
P G F FTA F + +Q + +P K ++ ++VD+
Sbjct: 1184 PSDSLHSGCLFWFTAQFKQPPSSAETGHEQ---KIMPDPLKNVRILIVDDNRTNRETLVR 1240
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L +G+ K+S + ++ K T+ E++ IL + ++G+ G + +
Sbjct: 1241 QL--VGMGAKVSEAADGKAALEKIKRTAQENRLYDLAILDIQMPGMTGDKLGLAIKKEAF 1298
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ KL+L+ + + + ++ GF+ + KP+R S ++ L VLS
Sbjct: 1299 GAD------IKLVLMLSIGRRGDARYFQSIGFSG-YLTKPVRYSELSDTLASVLSGG--- 1348
Query: 841 QAGRGVPNGSSFHQGLLRGK------KILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
QAG+ N H L G+ +IL+ +DN N++VA G L+KFG +V+ A+
Sbjct: 1349 QAGKE-ENARIRH---LNGEIKQPHVRILLAEDNITNQIVAKGILEKFGYSVDAVANGIE 1404
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A+ L+ +D MD+QM E+DG +ATR IR N S+V +
Sbjct: 1405 AIRALEKI-PYDMVLMDLQMSELDGLKATRMIR-----------NTASNVINP------N 1446
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+P++AMTA+ + ++CL GM+ Y+SKP + L ++ K+
Sbjct: 1447 IPVVAMTANAMAGDREKCLNAGMNDYISKPVDPIILAEKIEKWI 1490
>gi|343502907|ref|ZP_08740745.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio tubiashii ATCC 19109]
gi|418479493|ref|ZP_13048574.1| two-component regulatory system multi-sensor hybrid histidine kinase
[Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342812985|gb|EGU47967.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio tubiashii ATCC 19109]
gi|384572892|gb|EIF03397.1| two-component regulatory system multi-sensor hybrid histidine kinase
[Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 1199
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 183/631 (29%), Positives = 295/631 (46%), Gaps = 110/631 (17%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A++A+ AKS FLA +SHEIRTPMN I+GM L L TDL+ QR+Y ++ +L+ LI
Sbjct: 474 ADSANSAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLLGLI 533
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++E V F+L +LD++ +L ++ +G+EL + + VP
Sbjct: 534 NDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVP------ 587
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
T LVG+ ++ G I ++LA + TE+G +
Sbjct: 588 --------TTLVGDPLRL---GQIL--INLANNAV------------KFTEKGEIK---- 618
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
I++ + +D+ L VED+GIG
Sbjct: 619 -----------------------------------ISIRVAERNGDDLVLEFSVEDSGIG 643
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ ++F F QADSST+R YGGTG+GL+ISK L +LM G I S GS F+FT
Sbjct: 644 MTAEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIRVESEAGKGSCFTFT 703
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
E+I +P L+ +VVD+ + + L L SS
Sbjct: 704 VASKVSHALKQEEIA------VPVELGKLRVLVVDDNASARIIVEDILESLRFDAHSVSS 757
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW-KPNGHVFKLPKLI 793
DA + L++ QP +L+ D + G+D G + LL+ K + PK +
Sbjct: 758 ADDALAELNQALSNE----QPYDLLI-TDWQMPGKD-GID--LLEMVKAQISQSQQPKPL 809
Query: 794 LLATNISKDECDK--AKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
+L T ++E + + G +++ KP+ AS + + + ++ R + +
Sbjct: 810 ML-TAFGREELTEIIEQRGITVPSILDKPITASHLFDAIVSLYGVDHARLSRSEAEEQNQ 868
Query: 852 F-HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
+ L G ++L+V+DN +N+ +A L+ V A + + ALD L + FD M
Sbjct: 869 LANVQQLAGAQLLLVEDNEINQELAIELLEGQQMHVTVAENGQVALD-LYKTNEFDGILM 927
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
D QMP MDG+EAT+ IR K + +PI+AMTA+V+
Sbjct: 928 DCQMPIMDGYEATQYIR--------------------TKLSDHSIPIIAMTANVMERDKV 967
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ + GM+ ++KP + +++ LAK+ K
Sbjct: 968 KAAEAGMNDIIAKPIDVGSMFSTLAKWITPK 998
>gi|428305491|ref|YP_007142316.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428247026|gb|AFZ12806.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1154
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 187/624 (29%), Positives = 296/624 (47%), Gaps = 62/624 (9%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLA +SHEIRTPMN I+GM LLL+T+L+ QRD+ +T Q AL+ +IN++LD +
Sbjct: 434 KSQFLANMSHEIRTPMNAIIGMTGLLLNTELTPLQRDFVETTQTSSDALLTIINDILDLS 493
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIE+ KLELE FNLR +++ L L + K+ K IEL +S +VP + GD R RQI
Sbjct: 494 KIESGKLELENYSFNLRTCIEEALDLLTPKAAGKNIELVCLISPQVPIIIWGDSTRLRQI 553
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQF---NT 558
+ NL+ N++KFTE+G I + V+ E K L+ + + R + QF ++
Sbjct: 554 LVNLLSNAIKFTEKGEILLSVNAQEFEKNKK-------LSKKLDNNLNRQISIQFAVKDS 606
Query: 559 LSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI--GIP 616
G+ A + F + + + + + S SE + + VE G+ GIP
Sbjct: 607 GIGIPADRMDRLFKSFSQVDSSTTRHYGGTGLGLAISKQLSEMMGGQMWVESGGVIAGIP 666
Query: 617 LSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676
+ V ++ + Y + + ++++ ++ Q+ + P GSTF FT +
Sbjct: 667 PQEWQPVSNNLLE-QINKENFYTKSNLNQNVNEIFLD--ATQLQLANSPS-GSTFYFTII 722
Query: 677 FGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK 736
+ D+ S S+ KG + ++VD+ + G+ +S S++
Sbjct: 723 AEAEANTLAVDLVNSNSD-----LKGKRLLIVDDNTTNRQILVLQAQSWGM---LSYSLE 774
Query: 737 DASSTAKNGLTSSE--DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+ T + L E D D+ + + D G++ +L +K KLP ++L
Sbjct: 775 SGAKTLE-FLKQGEVFDLAILDMQMPDMDGLTLGKEI---RKLSAYK------KLPLVML 824
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ 854
T+++ E + FA + KP++ S + L +LS E Q +Q
Sbjct: 825 --TSLNGSESPNYQKVDFA-AFLTKPVKQSHLYNLLIHILS-EQPVQVKSSRTAAPKINQ 880
Query: 855 GLLR--GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
L +IL+ +DN VN+ VA LK+ G + A + AL L+ +D MD+
Sbjct: 881 HLAEELPLRILLTEDNVVNQKVALHILKRMGYEADIANNGLEALVALRR-QSYDVVLMDM 939
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMPEMDG ATR+I Q S E I+AMTA+ + + C
Sbjct: 940 QMPEMDGLTATRQICQEWSS-------------------EERPRIIAMTANAMQGDRELC 980
Query: 973 LKCGMDGYVSKPFEEENLYRELAK 996
L GMD YVSKP + L L+K
Sbjct: 981 LNAGMDDYVSKPIRVDVLIEALSK 1004
>gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
Length = 1508
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 185/625 (29%), Positives = 288/625 (46%), Gaps = 114/625 (18%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS FLA +SHEIRTPMN +LGM LLL+T+L+ QRD+A+T +I G AL+ LI
Sbjct: 877 AELASQAKSAFLANMSHEIRTPMNAVLGMTGLLLETNLNREQRDFAETIRISGDALLCLI 936
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
NE+LD +K+EA ++ LE + F+L +++VL L + ++ + +E+A + VP + GD
Sbjct: 937 NEILDLSKLEAGEMFLETLDFDLSTCVEEVLELLAPQAHKQELEIAGLIHRNVPVHLQGD 996
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R RQI+ NLVGN++KFT G I V+ L +T T+ T+ G+
Sbjct: 997 ASRLRQILMNLVGNAIKFTSTGEIVVRAELLSQT-----PNTVTIHFSVTDTGI------ 1045
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
G+ + D + F Q +ASI GG TG+G
Sbjct: 1046 ------GISSEDQNKLFQPFT--------QVDASITR---KYGG------------TGLG 1076
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +S Q LV LM G I S+ GS F F
Sbjct: 1077 LAISQQ------------------------------LVSLMGGTIGVNSQLGKGSQFWFK 1106
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
F + + V S E + + L +VVD+ + + G+ V ++S
Sbjct: 1107 LTFTQQLQPV-----HSIQESVILTHRRL--LVVDDNATNRKIIYHQATHWGMQVDEAAS 1159
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
A +T + T++E + D+ L++ + G G K N + +P ++
Sbjct: 1160 AVQALNTLQ---TAAETGMRYDLALIDMQMPQVDGLTLGTQI-----KANPLIADIPLIM 1211
Query: 794 LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL-STENKRQAGRGVPNGSSF 852
L +TN ++E KA GF + ++KP++AS + + +L S N + + N ++
Sbjct: 1212 LTSTN-QREEVQKALNIGFV-SYLVKPVKASRLLDTIVNILESRPNSPEIQKPTINKTTL 1269
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
+ L KIL+ +DN VN+ VA L+ G + AA+ + L +L +D MD
Sbjct: 1270 TKSQL---KILIAEDNLVNQKVALKQLQNLGYEADVAANGQEVL-QLLDRIPYDLILMDC 1325
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMP +DG E TR IR +R ++AMTA+ + C
Sbjct: 1326 QMPVLDGLETTREIR---------------------RRIHRQPVVIAMTANAMKEDQQIC 1364
Query: 973 LKCGMDGYVSKPFEEENLYRELAKF 997
L GM+ Y+SKP +E L R + +
Sbjct: 1365 LDAGMNDYLSKPVNKEKLARAIEHW 1389
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 24/153 (15%)
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP----HCFDACFMD 911
+L +++LVVDDN NR + +G V+ AASA AL+ LQ+ +D +D
Sbjct: 1124 ILTHRRLLVVDDNATNRKIIYHQATHWGMQVDEAASAVQALNTLQTAAETGMRYDLALID 1183
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+QMP++DG +I KAN + + +P++ +T+ +
Sbjct: 1184 MQMPQVDGLTLGTQI-----KANPLIAD---------------IPLIMLTSTNQREEVQK 1223
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
L G Y+ KP + L + +S+P S
Sbjct: 1224 ALNIGFVSYLVKPVKASRLLDTIVNILESRPNS 1256
>gi|395761501|ref|ZP_10442170.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum
PAMC 25724]
Length = 966
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 191/643 (29%), Positives = 273/643 (42%), Gaps = 151/643 (23%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS FLAT+SHEIRTPMNG+LGM LLL + LS QR Y Q G+ L+ +IN++LD
Sbjct: 298 AKSAFLATMSHEIRTPMNGVLGMTELLLASALSPQQRHYTSMVQRSGQNLLVIINDILDF 357
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIEA KL +E + FN R +LDD+ +F+ ++ K I L ++ +P + GDP R RQ
Sbjct: 358 SKIEAGKLSVEYIRFNFRELLDDIEHVFTPQAEAKNISLEFDIAFDIPIAICGDPYRLRQ 417
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
II NL+GN++KFTE G + VKV + DA L + G+ S Q
Sbjct: 418 IIVNLLGNAIKFTETGKVTVKV-----AVCSEDAPGVGLRFEVHDTGIGVSNEAQARIFE 472
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
ADG + KH GG TG+G+ +S Q
Sbjct: 473 SFSQADGSTTR---KH--------------------GG------------TGLGLTISKQ 497
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
LVELM G I + GS F F F K
Sbjct: 498 ------------------------------LVELMGGTIGVDNALTQGSIFWFEVNFDK- 526
Query: 681 KEYVFEDIKQSKSEDLPPGF-----KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSI 735
++ S+D P F +GL+A++VD P AV + L I +
Sbjct: 527 --------RRVDSDD--PSFNLKTTRGLRALIVDHTPATRAVLERQLASWHI-------V 569
Query: 736 KDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL--I 793
D++ TA + L Q + + LLD +LP+ +
Sbjct: 570 SDSADTASDCLRKLRAAAQ--------------AGTPYAVALLD-------MELPRTSGL 608
Query: 794 LLATNISKDECDKAKAGGF-------ADTV----------IMKPLRASMIAACL-QQVLS 835
LA I D AD V ++KP R + C+ +
Sbjct: 609 ALAATIKSDPLLAELKLLLLSTQRTAADPVQRREAGVAFQLIKPARECDLFDCIVTPPRA 668
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
++ R + H G + +++L+ +DN VN VA L G V CA + + A
Sbjct: 669 GDSLRLVAPHAARPAVRHPGRRQRRRVLLAEDNHVNVEVALAMLDSLGLDVVCARNGEEA 728
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L Q+ FD MD QMP MDGF AT IR+ E + + L
Sbjct: 729 LQAAQAED-FDLILMDCQMPVMDGFAATAEIRRHEQQCGHARV----------------L 771
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
PI+A+TA+ + + CL GMD Y+SKPF +++L +A++
Sbjct: 772 PIVAITANALQGDREACLAAGMDDYLSKPFTQQDLGHTIARWI 814
>gi|381159819|ref|ZP_09869051.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380877883|gb|EIC19975.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 970
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 177/623 (28%), Positives = 288/623 (46%), Gaps = 102/623 (16%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K RAE+A+ AK+ LA VSHE+RTPM+ I+G+ LLL D+ QRD A + ++
Sbjct: 324 EAKERAESANRAKTALLANVSHELRTPMSSIIGLAKLLLQADIPPAQRDRANKIRAAAQS 383
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ +++++L +K+EA ++ LE F L +L+ + S + ++R +++A + VP
Sbjct: 384 LLRILDDILAVSKMEAGRVRLEERDFMLDEVLEQIASFAAIRNREPLLDIAFAIGPGVPR 443
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
+ GDP R Q++ NL N++KFT G + + + A R +++A
Sbjct: 444 HLRGDPVRLGQVLLNLTSNAIKFTPSGSVLLCIEQAARAPGRSEA--------------- 488
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
GQ + D R+ KF ED + + E
Sbjct: 489 ---VGQPDQ------RDRRSVRLKF-----------------------ALEDTGIGIASE 516
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
D +R+F PF Q D+S SR GGTG+GL+IS+ LV+LM G I S+PQ GS
Sbjct: 517 DL---------QRLFQPFSQLDASASRTQGGTGLGLAISRHLVQLMGGDIEVESQPQGGS 567
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F F A FG +E +Q + P +A++V ++ + A+ LNR G+ V
Sbjct: 568 IFRFAAEFGLSQEE-----EQLSGPNWPEPVT--RALIVSDRELTQALFGQSLNRFGLAV 620
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
+++S +A + + E F ++L++ + + Q+ + +
Sbjct: 621 ALATSSSEALAMLGDA-CRKERAFA--LVLIDARLADAQAAAVAARQM---RQQPEIDPK 674
Query: 790 PKLILLATNISKDECDKAKAG-----GFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
P ++L+ T + + D+A+ G G + I ++ L Q L + + R
Sbjct: 675 PAVVLIGT-LGAMQSDQAQTGDGLFDGLVTSAISNAALRGVLLCALDQALPQDREVSQLR 733
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
P G + G ++LV DD+ VNR +A L+ G V AA AL L
Sbjct: 734 A-PVGQ-----IPPGTRVLVADDHAVNREIAVDVLEGLGFEVTAAADGFEALACLGRER- 786
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
FDA +DI+MP +DGFE T R+R A+ ++ LP++A+TA
Sbjct: 787 FDAVLIDIRMPGLDGFEVTERLR-----ADPRLA---------------RLPVIALTAHG 826
Query: 965 IHATFDECLKCGMDGYVSKPFEE 987
+ C GM G +SKP +E
Sbjct: 827 MIEGEHLCRGAGMSGLLSKPLDE 849
>gi|440679909|ref|YP_007154704.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428677028|gb|AFZ55794.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1543
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 189/646 (29%), Positives = 298/646 (46%), Gaps = 122/646 (18%)
Query: 361 VEDDFHKMQELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+E + + QEL++ +AE A +AKS FLA +SHEIRTPMN +LGM LLL+T L+ Q+
Sbjct: 860 LEAETQQRQELELARHQAELASLAKSAFLANMSHEIRTPMNAVLGMTGLLLETALNREQQ 919
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
D+ +T +I G AL++LINE+LD +K+EA ++ELE + F+L + +++VL L + ++ +KG+
Sbjct: 920 DFVETIRISGDALLSLINEILDLSKLEAGEMELEHLDFDLSSCIEEVLDLLAPQAHHKGL 979
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
E+ + KVP + GD R RQI+ NL+GN++KFT G + V+V L T A
Sbjct: 980 EIGALIRRKVPIQLQGDASRLRQILMNLIGNAIKFTSEGEVVVQVELLSET-----ATTA 1034
Query: 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
T+ T+ G+ G+ + D + F Q +ASI G
Sbjct: 1035 TIKFSITDTGI------------GITSEDQHKLFQAFS--------QVDASITRQY---G 1071
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G TG+G L+I + LV LM G
Sbjct: 1072 G------------TGLG------------------------------LAICRQLVNLMGG 1089
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I S GS F F F K + Y +K+ P + +VVD+ +
Sbjct: 1090 EIGVTSEIGQGSKFCFDLSFTK-QLYFACPVKE------PEILTNRRLLVVDDNDTNRKI 1142
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDSGFNAQ 776
+ R G+ V +++ + A + + + DI LV+ + G G
Sbjct: 1143 VYHQATRWGMQVDEAANAQVAFQALQAAAAAGKPY---DIALVDMQMPTVDGLTLGVQI- 1198
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL-- 834
K N + +P ++L +TN +DE KA GFA ++ KP++ S + + +L
Sbjct: 1199 ----KANDAIAHVPLIMLTSTN-QRDEVQKALKIGFAGYLV-KPVKPSRLFDTIMNILVA 1252
Query: 835 -STENKRQAG---------RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
S N Q + +SF + +R +L+ +DN VN+ VA L+ G
Sbjct: 1253 KSNLNDHQISLISETLSLDQQFTQTTSFTKTNIR---VLLAEDNLVNQKVALKQLQTLGY 1309
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
+ ++ + L L++ +D MD QMP +DG + TR IR + + V
Sbjct: 1310 IADTVSNGEEVLHLLETVP-YDLILMDCQMPVLDGLQTTRAIRNW---PDSHFLRRRQPV 1365
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
I+AMTA+ + CL GM+GYVSKP +E L
Sbjct: 1366 ------------IIAMTANAMKEDEQTCLNAGMNGYVSKPVVKEKL 1399
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC----FDACFMD 911
+L +++LVVDDN NR + ++G V+ AA+A+ A LQ+ +D +D
Sbjct: 1124 ILTNRRLLVVDDNDTNRKIVYHQATRWGMQVDEAANAQVAFQALQAAAAAGKPYDIALVD 1183
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
+QMP +DG +I KAN+ + H+P++ +T+ +
Sbjct: 1184 MQMPTVDGLTLGVQI-----KANDAIA---------------HVPLIMLTSTNQRDEVQK 1223
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LK G GY+ KP + L+ + +K
Sbjct: 1224 ALKIGFAGYLVKPVKPSRLFDTIMNILVAK 1253
>gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
DSM 271]
gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
DSM 271]
Length = 991
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 192/635 (30%), Positives = 292/635 (45%), Gaps = 121/635 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K+ED +++ A+AA+ AKSQFLA +SHEIRTP+NG++GM LLL++ L + QR +
Sbjct: 318 KLEDAIRNARKMAAHADAANDAKSQFLANMSHEIRTPLNGVIGMTDLLLESALDTEQRKF 377
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
AQT G+ L+ L+N++LD +KIEA KLE+E + F+L +L++V++LF+ + K ++L
Sbjct: 378 AQTISSSGRNLLRLVNDILDFSKIEANKLEIEYLDFDLLDVLEEVIALFAYSAHEKNVDL 437
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+P + GD R +QI+ NLV N++KFT G + V L ER ++DA
Sbjct: 438 IFLPDHTIPFRLKGDAARLQQILVNLVSNALKFTAEGEVVFSVDL-ER---ESDA----- 488
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
+ T +F D F A+G +M+ GG
Sbjct: 489 -----------TATIRFTVSDTGIGIDSERIEAVFAPFTQADG--------SMIRKYGG- 528
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TG+G+ +S Q L M +I
Sbjct: 529 -----------TGLGLSISNQ------------------------------LARKMNSEI 547
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S P+ GSTF F+ +F K K E ++E L G K + +V D +P R +
Sbjct: 548 HVQSSPENGSTFCFSMIFEKQKTQTNE-----RNEALLAGRKVM--LVDDYEPCRKLLRL 600
Query: 720 YHLN---RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF--- 773
+ ++ R +++ +I A+NG + II V+ + S F
Sbjct: 601 FAVSWNVRFAAESELNEAIDLLERDARNG-----SPWDCVIIAVKDSASMMEIQSMFERL 655
Query: 774 -NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
N LLD V LP L + + D GF V+ KP+R+ +++CL
Sbjct: 656 HNISLLDTL--RQVLLLP----LGSTFNPDSL----PAGFVSAVLQKPVRSRDLSSCLFD 705
Query: 833 VLSTENKRQAG--RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
+L T AG G P+ ++ +ILVV+D+ VN+ V L K G +V+ A
Sbjct: 706 LLCTSPGTGAGDEDGAPSEPEKESKQVKPLRILVVEDSVVNQQVLVAMLSKNGCSVDIAE 765
Query: 891 SAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ AL L +P +D MD QMPEMDGFEATRRIR E G
Sbjct: 766 NGVEALKALGTTP--YDLVLMDCQMPEMDGFEATRRIRSGEH--------------GVLN 809
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
D + ++A+TA+ + + CL GM+ Y+ KP
Sbjct: 810 PD---IAVIAVTANAMKGDRERCLHAGMNDYIPKP 841
>gi|350551561|ref|ZP_08920775.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349796928|gb|EGZ50709.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1212
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 194/651 (29%), Positives = 300/651 (46%), Gaps = 129/651 (19%)
Query: 366 HKMQE----LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ 421
H+M E L + A+ A+ AKS+FLA +SHEIRTPMNG++GM LL+DT+L++ QR YA+
Sbjct: 447 HEMMERATNLAIDADVANRAKSEFLANMSHEIRTPMNGVIGMTGLLMDTELTAQQRHYAE 506
Query: 422 TAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
+ ++L++LIN++LD +KIEA KL+LE + FNL +LD+ + + ++ KG+E
Sbjct: 507 SVLSSAESLLSLINDILDFSKIEAGKLDLEQIDFNLLNLLDEFATTLAWRAHQKGLEFIC 566
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLN 541
V P + GDPGR RQI+ NL N+VKFT G + V+V A+D+ +L
Sbjct: 567 AVEPDTPVHLRGDPGRLRQILNNLGSNAVKFTHSGEVVVRVRCLH------SAQDQVVLQ 620
Query: 542 GG-TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
T+ G+ G+ D +++F L +AS GG
Sbjct: 621 CAITDTGI------------GIAQQDLALLFERFAQL--------DASTTR---QYGG-- 655
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
TG+G+ + + TS +G G VE GQ
Sbjct: 656 ----------TGLGLAICKR------------LTSLMHGEIG---------VESKAGQ-- 682
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP--PGFKGLKAVVVDEKPVRAAVT 718
GSTF FT + S DLP +G++ +VVD+ P +
Sbjct: 683 -------GSTFWFTVTLLPSQP--------SAIPDLPVHTDLQGVRILVVDDHPTNCEIL 727
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L+ G+ + A + T+ D FQ +I + + GE G Q
Sbjct: 728 MALLHSWGMRPCEARDGMQALVMLREAATTP-DPFQVALIDLAMPI-MDGEQLGQMIQ-- 783
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
+ + + +++ + + + A GF + KP+R + L VL E+
Sbjct: 784 ----SDELLAALRCVIMPSLTVPGDLKRYAASGF-HAYLPKPVRQQDLHNVLCNVLD-EH 837
Query: 839 KRQAGRGVPNGSS----------FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
RQA V SS F Q R IL+V+D+ VN+ VA GAL++ G + +
Sbjct: 838 TRQAETMVTRHSSRERMYAEQPLFAQWQAR---ILLVEDDPVNQEVALGALQRLGLSADL 894
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIR-QMESKANEQMMNGGSSVDGT 947
A + + AL L + +D FMD+QMP +DGF ATR++R Q S N Q
Sbjct: 895 AENGEQALQAL-AMATYDLVFMDVQMPVLDGFAATRKLRSQARSALNVQ----------- 942
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA+ + ++CL CGM+ Y+ KP + L + ++
Sbjct: 943 -------VPIIAMTANAMQGDREKCLACGMNDYLPKPLSRDALEAAIKRWL 986
>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 686
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 179/635 (28%), Positives = 287/635 (45%), Gaps = 141/635 (22%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+ E K RAEAA+VAKS+FLATVSHE+RTP+NGILGM LLLDT L+ QR Y + +
Sbjct: 162 RSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTPLNPEQRTYVEAFRT 221
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
GKAL+ L++ +LD ++IEA +L+L A F++ A+++ V+ L + ++++KG+E+A+ ++D
Sbjct: 222 SGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIAD 281
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+ +GD R RQI+ NL GN++KFT+ G + V
Sbjct: 282 DLTALRVGDADRVRQILVNLAGNAIKFTQAGGVGVS------------------------ 317
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
+ R+G GQ EGF +
Sbjct: 318 --LARAGEGQ------------------------REGF---------------------V 330
Query: 606 VCVEDTGIGIPLSAQERV---FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
+ +EDTG GIP +ER+ F F Q + S S + GTG+GL+I++ LVE M G I
Sbjct: 331 LTIEDTGPGIP---EERIPILFEEFEQGEDSAS--HEGTGLGLAITRRLVERMNGTIE-- 383
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP---PGFKGLKAVVVDEKPVRAAVTQ 719
+R VG F V + ++ +P P K ++V P +A
Sbjct: 384 ARSTVGRGSIFRVVL---------PLPAAEGAPVPVPQPTLAPRKILIVAASPYQAPFLA 434
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L+R G ++ + D++ + L+ V D I+ G +A +
Sbjct: 435 RRLSRSG----AAAVVVDSAEAGLDALSG-----------VAFDALIADRSLG-DAAVRR 478
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ ++L + + E A GF D+ ++KP+RA + ++L E +
Sbjct: 479 LAAEAARSGVRCSLILLSPFDRREFGAPSAKGF-DSYLIKPVRAR---SLFDRLL--EPR 532
Query: 840 RQAGRGVPNGSS---------FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
RG+ + G+++L+ +DN +N ++A AL++ GA V A
Sbjct: 533 PAPARGIGEAPAQTTEAPTPPLPVKAAPGRRVLLAEDNPINALLATKALERLGAQVILAR 592
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
L + FD +DI+MP +DG E RRIR E++ +
Sbjct: 593 DGLETLAAVDGQGPFDLALIDIRMPGLDGLEVARRIRAREAETGAE-------------- 638
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
LHL +A+TA+ G D ++ KP
Sbjct: 639 -PLHL--VALTANTGREDVTAAFAAGFDNFLPKPL 670
>gi|225374848|ref|ZP_03752069.1| hypothetical protein ROSEINA2194_00471 [Roseburia inulinivorans DSM
16841]
gi|225213309|gb|EEG95663.1| hypothetical protein ROSEINA2194_00471 [Roseburia inulinivorans DSM
16841]
Length = 636
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 177/631 (28%), Positives = 278/631 (44%), Gaps = 141/631 (22%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AK FLA +SHE+RTP+NGILG+ L D + + D+ + + + L L+N+VLD
Sbjct: 133 AKELFLARMSHELRTPINGILGISQLAHYKD-AEVREDFKKI-RYQAEYLWELVNDVLDM 190
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
A I+ K+ + V F+L ++ +V LF + R K I V + E+++GD R +Q
Sbjct: 191 AAIDNGKMTIRHVAFSLNEVVSEVSGLFYSQCRMKRIYFYFRVDNVTHEYLIGDAIRVKQ 250
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
++ NL+ NS KFTE+ GGT E VC +S
Sbjct: 251 VLVNLLSNSFKFTEK--------------------------GGTIE-VC---------MS 274
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
L+ D R L + V DTG GI A
Sbjct: 275 ELDVDDSRT---------------------------------VLHITVRDTGCGISDKAL 301
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
E+++ PF Q ++YGG+G+GL I K +VE M G I S VGS F F
Sbjct: 302 EKIWEPFEQEQHENGKYYGGSGLGLPIIKSIVEQMHGTIDVASEYNVGSKFIVDIPFEIG 361
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
K V E K F+ LK +V+ + L RLGI D+S+
Sbjct: 362 KSIVREKRK----------FRSLKVFLVNNDEIALHYMMSTLTRLGIRY-------DSST 404
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGH----------VFKL 789
K +II + K+ + GE G++ ++W+ P G+ +F
Sbjct: 405 DGK------------EIIRILKEAYERGE--GYDICFVNWQMPGGYGKKLVREMREIFDR 450
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
L ++ ++ ++ ++ G D ++ KP+ S + + + ++ S +A +
Sbjct: 451 DTLKIVTSSYDTEDYEEEMRGAGVDYILKKPVLQSQVYSLISEICSVP---EAEKNKTED 507
Query: 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS--PHCFDA 907
F GK+ L+ +DN VN V G LK A VECA + +AAL + Q+ + +D
Sbjct: 508 YDF-----TGKRALLAEDNAVNAEVFQGFLKAVNAEVECADNGEAALSRYQNMPDYYYDM 562
Query: 908 CFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967
FMD+ MP MDG+EA + IR G+ K D +PILA+TA+ +
Sbjct: 563 IFMDLNMPIMDGYEAAKSIR------------------GSKKPDASDIPILAVTANAMAK 604
Query: 968 TFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ + GM+ ++KP + E LY+ + K+
Sbjct: 605 DIVKVHEAGMNERITKPVQRELLYQTMEKYI 635
>gi|345863660|ref|ZP_08815869.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125209|gb|EGW55080.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 898
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 186/627 (29%), Positives = 292/627 (46%), Gaps = 114/627 (18%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A +A AKS+FLA +SHEIRTPMNG++GM +LLLD+ LS Q A + ++L++LI
Sbjct: 226 ALSATRAKSEFLANMSHEIRTPMNGVIGMTSLLLDSPLSDEQHGRALIVKRSAESLLSLI 285
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD KIEA +L+LE + F+L A++DD + + ++ KG+EL + + + GD
Sbjct: 286 NDILDFTKIEAGRLDLEIIDFDLGALMDDFAATMAFRAEEKGLELVCPANPVLHHWYQGD 345
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
PGR RQI+TNLVGN++KFTE+G + V+ L + D TLL S TG
Sbjct: 346 PGRIRQILTNLVGNALKFTEQGEVSVRYDLI------AEEGDRTLLRFRV------SDTG 393
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
GL + +++F Q++ S GG TG+G
Sbjct: 394 -----IGLSVEQQEHLFERFT--------QADGSTTRQY---GG------------TGLG 425
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +S Q LVELM G+I S GSTF FT
Sbjct: 426 LSISKQ------------------------------LVELMGGEIGVESSLGEGSTFFFT 455
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
+ K+ DL + K +VVD+ A + L+ + + ++
Sbjct: 456 LDLANAEVQT----PPRKTSDL----RSEKVLVVDDN----ATNRQLLDEVLTVWQVEHD 503
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+ + A L + P I + D + G D AQL + + +L
Sbjct: 504 LAASGPAALQALHDAAGLDMPYTIAL-LDMQMPGMDG---AQLGASIHSDKKLAATRTVL 559
Query: 795 LATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV--LSTENKRQAGRGVPNGSSF 852
L + + + + GF + KP+ S + L QV ++ +++R R
Sbjct: 560 LTSQGRRGDAKQMHEAGFF-GYLSKPINQSELYNALLQVAGITGDDERLITRYT--AREI 616
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMD 911
Q ++LVV+DN N+ VA G L+KFG ++ A+ + A+ L Q P +D FMD
Sbjct: 617 QQF---NARVLVVEDNVTNQAVAQGMLEKFGVHIDLVANGQEAITALEQLP--YDLVFMD 671
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
QMP MDG++ATRRIR +S + ++P++AMTA+ + D+
Sbjct: 672 CQMPVMDGYDATRRIRDPQSSVKDH-----------------NIPVIAMTANAMQGDRDK 714
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFF 998
C++ GMD +++KP + L R L ++
Sbjct: 715 CIEAGMDDHIAKPVDPRKLRRALEQWL 741
>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
sediminis HAW-EB3]
gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
sediminis HAW-EB3]
Length = 2213
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 195/682 (28%), Positives = 295/682 (43%), Gaps = 158/682 (23%)
Query: 350 ILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
IL G I + ++ K AE A AKS FLA +SHEIRTPMN I+GM L L
Sbjct: 1450 ILLGITQDITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQ 1509
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
T L QRDY Q ++L+ALIN++LD +K+EA K+E+E FNL LD + L +
Sbjct: 1510 TGLDRKQRDYINKIQSASESLLALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLIT 1569
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA---- 525
K+R K +EL + VP ++GD R QI+ NL N+VKFTE+G + V +
Sbjct: 1570 VKTREKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNAVKFTEKGEVVVSIEKVCVDD 1629
Query: 526 ERTMVKTDAKDETLLNGGTEEGVCRSGTGQ-FNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
E+ +K KD + G+ + G+ F + S +A+ R
Sbjct: 1630 EQVTLKFTVKDTGI-------GMTKEQMGKLFQSFSQADASTTRKY-------------- 1668
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
GG TG+G+ +S +
Sbjct: 1669 ------------GG------------TGLGLTISKK------------------------ 1680
Query: 645 LSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGL 703
L ELM G IS S GS+F FTA FG + E + Q LP P + L
Sbjct: 1681 ------LTELMGGAISVESTFGKGSSFVFTANFGLSQ--AAEVVSQ-----LPKPDLRHL 1727
Query: 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKD 763
++VD+ PV + + + L +V +SS ++A +EK
Sbjct: 1728 PILIVDDSPVARQILRQNGEALTFVVDEASSGEEA---------------------IEKL 1766
Query: 764 CWISGEDSGFNAQLLDWKPNG-------HVFK------LPKLILLATNISKDECDKAKAG 810
+ F +DWK G H K P I++ T + E G
Sbjct: 1767 HDYDQLGTPFKVVFIDWKMPGMDGVETCHRIKSEENIESPPNIVMVTAYDRHELIHEMEG 1826
Query: 811 GFADTVIMKPL-RASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGL-----LRGKKILV 864
V+ KP+ ++SM+ A + + E KR + ++ GL +RG +L+
Sbjct: 1827 MEVSGVLTKPVTQSSMLDATMVAMGYEEAKR-------DEQAYDLGLDAAKAIRGTHVLL 1879
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATR 924
V+DN +N+ VA L+ G V A+ + A +++++ FD MDIQMP MDG+ ATR
Sbjct: 1880 VEDNDINQQVATELLEMAGLVVTTASDGQEACERVKT-ELFDVILMDIQMPVMDGYTATR 1938
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
IR+ LP++AMTA+ + ++CL GM+ +++KP
Sbjct: 1939 HIRKFSGYE--------------------ELPVIAMTANAMDGDREKCLDAGMNDHIAKP 1978
Query: 985 FEEENLYRELAKFFKSKPLSGA 1006
+ +++ L K+ P GA
Sbjct: 1979 IDPASMFAALVKWV--TPQEGA 1998
>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
Length = 1049
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 177/319 (55%), Gaps = 60/319 (18%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E+ + EL V+AEAA+ AKS+FLA +SHEIRTPMNG +GM LLLDT+L+ QR Y
Sbjct: 499 QLENATARANELAVQAEAANHAKSEFLANMSHEIRTPMNGFIGMTMLLLDTELTEEQRQY 558
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A + G++L+ LIN++LD +KIEA KLE+E + F+L+++LDD + + K+ +KG+EL
Sbjct: 559 AGIVKSSGESLLVLINDILDFSKIEAGKLEIETLDFDLQSLLDDFAATTAFKTHDKGLEL 618
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
VP + GDPGR RQI+TNLVGN++KFTE+G + ++V
Sbjct: 619 LCAAEPDVPVQLSGDPGRLRQILTNLVGNALKFTEKGEVAIRVK---------------- 662
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
T C++G N +AS++
Sbjct: 663 ----TVGEACQTGQTSLN---------------------------DDASLL--------- 682
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
L V DTGIGIP +F F Q D+ST+R YGGTG+GL+ISK L E+M G+I
Sbjct: 683 ----LRFSVRDTGIGIPADKIGMLFQQFTQVDASTTRKYGGTGLGLAISKHLAEMMGGEI 738
Query: 660 SFVSRPQVGSTFSFTAVFG 678
S GS F FTA G
Sbjct: 739 GVESVEGQGSEFWFTARLG 757
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 18/141 (12%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
R +IL+ +DN N+ VA G LKK G + + A+ + A++ L++ +D MD+QMPEM
Sbjct: 786 RKARILLAEDNITNQQVAQGILKKLGLSADAVANGREAIEALKT-LPYDLVLMDVQMPEM 844
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG EATR+IR +S + ++PI+AMTA + ++ L GM
Sbjct: 845 DGLEATRQIRNPKSPIPNR-----------------NIPIIAMTAHAMQGDREKFLAAGM 887
Query: 978 DGYVSKPFEEENLYRELAKFF 998
+ YV+KP ++L L K+
Sbjct: 888 NDYVAKPVSPQDLAEALEKWL 908
>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
Length = 786
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 193/696 (27%), Positives = 299/696 (42%), Gaps = 144/696 (20%)
Query: 338 FFLFVIGLLVGYILYGAAIHIVK-----VEDDFHKMQELKVRAEAADVAKSQFLATVSHE 392
L+ GLL G +L A I + + F + E +AEAAD AKS+FLA +SHE
Sbjct: 191 LLLWASGLLFG-VLAIVAFWIFRPMEQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHE 249
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMNG+LGM LL T+L+ Q+ + G AL+ +IN++LD +KI A +L L+
Sbjct: 250 IRTPMNGVLGMAELLAKTELTPRQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDP 309
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
F L ++DV +L S + K +EL V V ++P V+GD GRFRQI+TNLVGN+VKF
Sbjct: 310 APFRLTEAVEDVATLVSARVAEKNLELIVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKF 369
Query: 513 TERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWD 572
TE+GH+ + V G T V + +T G+ A +N ++
Sbjct: 370 TEKGHVLIDV------------------GGETVNDVVQLRLRVEDTGIGIPAEKLQNVFE 411
Query: 573 KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632
KF +D + + E TG+G+ ++A+
Sbjct: 412 KFAQ-VDGSSTRRH----------------------EGTGLGLAIAAR------------ 436
Query: 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSK 692
LV+LM G+I S GS F F E I
Sbjct: 437 ------------------LVDLMAGKIGVESEIGRGSVFWFAVPLPVHHAEAREAI---- 474
Query: 693 SEDLPPGFKGLKAVVVDEKPVR--------------------AAVTQYHLNR---LG--- 726
+P G + +V+D+ PV AV L+R LG
Sbjct: 475 ---VPVDVTGARVLVIDDNPVNREILLEQLRSWSFDCAAAESGAVGLAFLDRACQLGASV 531
Query: 727 --IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
I++ + + A+ S P +IL D F ++D+ +
Sbjct: 532 DCIILDYQMPGMNGADVARAIAADSRLSAIPIVILTSVD------QVDFGKMIIDFGISA 585
Query: 785 HVFKLPK-LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST-ENKRQA 842
H+ K + +LL T IS KA++ G I +P++ + +
Sbjct: 586 HLTKPARSAVLLGTVISV--IQKARSQGGKAQFIREPVQPKPVPQAAPPAFTVIRGPAVP 643
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
VP ++ G + IL+ +DN VN++V L G + A + + A++ +S
Sbjct: 644 VMAVPESTAMPNGPI---DILIAEDNEVNQLVFGQILNGLGLSYRIAGNGRTAVEMYRSL 700
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H MD+ MPEM+G+EATR IR +E+ +GG H+PI+ +TA
Sbjct: 701 HP-KLILMDVSMPEMNGYEATRAIRAIETS------SGG------------HIPIIGVTA 741
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ D+C++ GMD Y+ KP + L ++ +
Sbjct: 742 HALKGDRDKCIEAGMDDYLPKPVSPDRLGTKIGTWL 777
>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
Length = 1205
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 184/629 (29%), Positives = 286/629 (45%), Gaps = 118/629 (18%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS FLA +SHEIRTPMN I+GM L L TDLS QR+Y Q ++ +L+ LIN++LD
Sbjct: 480 AKSDFLANMSHEIRTPMNAIIGMSYLALKTDLSKAQRNYIQKVKLSADSLLGLINDILDF 539
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIEA KL++E V F+L +LD++ +L ++ +G+EL + + VP ++GDP R Q
Sbjct: 540 SKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGDPLRLGQ 599
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
I+ NL N+VKFTE+G I V + L K D D TL T+ G+
Sbjct: 600 ILINLANNAVKFTEQGEIKVSIALE-----KKDGNDITLKFSVTDSGI------------ 642
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G+ ++KF Q+++S GG TG+G+ +S
Sbjct: 643 GMTPEQCNKLFNKFT--------QADSSTTRKY---GG------------TGLGLAIS-- 677
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
K L +LM G I S GSTFSFT G
Sbjct: 678 ----------------------------KELCQLMGGDIGVTSEQGKGSTFSFTVQLG-- 707
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
V +KQ + +P LK +VVD+ + + L L +++ A
Sbjct: 708 ---VSHALKQEQLL-VPKELGQLKILVVDDNASARLIVEDILESLQFETTSVTNVDSALD 763
Query: 741 TAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
+ +T+ QP D+++ + W G + + W + PKL++L T
Sbjct: 764 ELEEAITNK----QPYDLVISD---WQMPVKDGIDLAEIMWDRLAE-REQPKLLML-TAY 814
Query: 800 SKDECDKAKAGGFAD------TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
++E A F + +++ KP+ +S + + + E R + V +
Sbjct: 815 GREELTDA----FINRQLTPPSILDKPVTSSHLFDAIVTLYGVEGSRVSRSDVEEQTQLA 870
Query: 854 QG-LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
L G ++L+V+DN +N+ +A L+ V A + + A+D L H FD MD
Sbjct: 871 NAQQLAGAQLLLVEDNEINQELATELLEGQQVHVTIAENGQVAID-LYKSHDFDGILMDC 929
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMP MDG+EAT IRQ K D+ +PI+AMTA+V+ ++
Sbjct: 930 QMPVMDGYEATEFIRQ--------------------KLDDKQIPIIAMTANVMERDKEKA 969
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
GM+ ++KP + ++ LAK+ K
Sbjct: 970 KNAGMNDIIAKPIDVGAMFSTLAKWITPK 998
>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 1191
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 191/668 (28%), Positives = 307/668 (45%), Gaps = 133/668 (19%)
Query: 348 GYILY-GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
G+I++ G + + ++Q+ K AEAA+ AKS FLA +SHEIRTPMNG++GM L
Sbjct: 509 GHIVWNGFLTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTEL 568
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
LLDT L + Q++Y + +AL+ +IN++LD +KIEA K+++E++ FNL + D L
Sbjct: 569 LLDTTLDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLK 628
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
++ +KG+E+ V+ VP ++GDPGR RQ++ N++GN++KFTERG + +++
Sbjct: 629 TVVLRAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRI---- 684
Query: 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSN 586
+ E NG + S TG G+ A + +D F
Sbjct: 685 --------RQEVASNGKPLLHLAVSDTG-----IGIPANKLGSIFDAFSQ---------- 721
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
ED + TG+G+ + A+ M GGT
Sbjct: 722 -------------EDSSTTRKYGGTGLGLTICARLVEGM-------------GGT----- 750
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV 706
VE GQ GS F FT K E + GL +
Sbjct: 751 ---IWVESTPGQ---------GSVFHFTVALVKDTSAPVETAALIR-------LDGLHIL 791
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGL---TSSEDKFQPDIILVEKD 763
VVD+ V V L+ G +S D+ A + L T++ + D++L++
Sbjct: 792 VVDDNLVNREVVCGMLHSFG----ARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQ 847
Query: 764 CWISGEDSGFN-AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG--GFADTVIMKP 820
E GF+ A L+ PN LP ++L + + D + G G+ I +
Sbjct: 848 M---PEMDGFSTAPLVRGLPN--CSSLPMVLLSSAGMKGDGQRSRQVGIAGYLSKPIARQ 902
Query: 821 LRASMIAACLQ------QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
M++ LQ +VL T + + V + IL+V+D+ +N+ +
Sbjct: 903 DLLQMVSGVLQMHKVRPEVLVTRHSIRDSHPVLD-------------ILLVEDHAINQKL 949
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
A L+++G V+ A + + ALD L +D MD+ MP MDG EATR IR AN
Sbjct: 950 AVTLLQRWGHHVDVAGNGQIALDMLPK-RPYDLILMDMMMPVMDGLEATRHIR-----AN 1003
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
E+ +R +PI+AMTA+ + + + CL+ GMD Y++KP + E L +++
Sbjct: 1004 ER-----------GRR----IPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKI 1048
Query: 995 AKFFKSKP 1002
+ + P
Sbjct: 1049 LQLSHAAP 1056
>gi|372488879|ref|YP_005028444.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359355432|gb|AEV26603.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 1279
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 182/630 (28%), Positives = 285/630 (45%), Gaps = 138/630 (21%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMN ++GM L L TDL QR+Y + Q + L+ +IN++LD +K E
Sbjct: 539 FLANMSHEIRTPMNAVIGMTHLALKTDLDERQREYLRKIQHSSQHLLGIINDILDFSKSE 598
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A KL +E + F+L +L+DV SL SE++ +KG+E + ++D ++ +
Sbjct: 599 AGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEFVIEMAD--------------EVPRH 644
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
LVG+ ++ G + + VK + E ++ G EE GQ
Sbjct: 645 LVGDPLRI---GQVLINY---ASNAVKFTERGEVAIHVGLEED-----QGQ--------- 684
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
+V L V DTGIGI +F
Sbjct: 685 ------------------------------------EVLLRFAVHDTGIGIKAGELPTLF 708
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F QADSST+R YGGTG+GL I+K L ELM GQ+ S P GSTF FTA G+
Sbjct: 709 NSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGSTFWFTARLGRSS--- 765
Query: 685 FEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
++ P P + + +VVD+ V L + V S D+ +
Sbjct: 766 -----NARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQV----SDTDSGNRCL 816
Query: 744 NGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL----PKLILLATN 798
L + +P DI+ ++ W E G + +L P L+L+ T
Sbjct: 817 AELQRASAAGEPYDIVFLD---WQMPEMDGLATAR-------EIRRLELPQPPLVLMITA 866
Query: 799 ISKDECDKAKAGGFA-----DTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
+DE A++ G + + +++KP+ S + + ++L E+ P+ ++
Sbjct: 867 YGRDEL--ARSAGESGLQGIEEILIKPVSPSQLFNTVMRILDHEDG-------PHSAADP 917
Query: 854 QGL-----LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
+ L L G ++L+V+DN +N+ VA+ L V+ A +AL+K++ +D
Sbjct: 918 EALPDLAPLAGLRVLLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQ-QRYDVI 976
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MD+QMP MDG ATR IR+ A LPILAMTA+ +
Sbjct: 977 LMDMQMPVMDGIAATREIRRQFPAAV--------------------LPILAMTANAMEQD 1016
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ CL GM+ +++KP + +L +L K+
Sbjct: 1017 RERCLAAGMNDHIAKPVDPRDLLGKLLKWL 1046
>gi|428316381|ref|YP_007114263.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428240061|gb|AFZ05847.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 2009
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 188/632 (29%), Positives = 290/632 (45%), Gaps = 84/632 (13%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ + AEAA AKS+FLA +SHEIRTPMN ++GM LLLDT+L + QRD+ +T + G
Sbjct: 1315 LEQTRQEAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNSG 1374
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+++IN++LD +KIE+ KLELE +LR ++ + + K+ K IEL +
Sbjct: 1375 DTLLSIINDILDFSKIESGKLELEKHPLSLRDCIEGAIDQLAVKADEKEIELGYLIHPLT 1434
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P F+LGD R RQI+ NL+ N++KFTE G + + V + KT ++ L E
Sbjct: 1435 PNFILGDVTRLRQILVNLLNNAIKFTETGEVTISVQASAVDSDKTISEPGNLPESLYEIQ 1494
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
TG G+ A + F + + Q + + + S SE + M+
Sbjct: 1495 FAIQDTG-----IGIPANRLDRLFKSFSQVDASTTRQYGGTGLGLAISKRLSEMMNGMMW 1549
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VE +G + GGT + Q + R +
Sbjct: 1550 VESSG------------------------YVGGTPSP-----------KWQPAKPHRVAM 1574
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF FT V + E + ++ P G + ++VD++P + G
Sbjct: 1575 GSTFYFTIVASSVATELSEPM------EMLPELSGKRLLIVDDQPTNRQILTLQAETWG- 1627
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
M S ++ A N L S E DI ++ D + D A + P H
Sbjct: 1628 ---MQSLAAPSAVEALNWLDSGETF---DIAIL--DMQMPQMDGLTLASAIHQHPKCH-- 1677
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR---QAGR 844
+LP L+LL + + A + FA + KP++ S + L VL + K+ Q R
Sbjct: 1678 RLP-LVLLTSMGYPEAGSSALSTHFA-ACLSKPIKQSQLYQILIHVLQAQPKKVQQQLPR 1735
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
V + Q L +IL+ +D+ VN+ VA L++ G + AA+ L+ L
Sbjct: 1736 SVEDDMKLAQRL--PLRILLAEDHLVNQKVALLLLERLGYRADIAANGLEVLEALNR-QP 1792
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
+D MD+QMPEMDG EA+RRI Q E A+ T R I+AMTA+
Sbjct: 1793 YDVVLMDVQMPEMDGLEASRRICQ-EWPAH------------TRPR------IIAMTANA 1833
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ CL GM+ Y+SKP + L + L++
Sbjct: 1834 MQGDRQVCLDAGMNDYISKPIRVDALIQALSQ 1865
>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1559
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 196/699 (28%), Positives = 309/699 (44%), Gaps = 145/699 (20%)
Query: 327 ASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV---RAEAADVAKS 383
+S W++ T L I VG L A + + + + +EL+V +AE A KS
Sbjct: 843 SSRQWSSFET-HLLRQIADQVGIALAQAQMLYAETQ----QRRELEVARHQAELASKTKS 897
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443
FLA +SHEIRTPMN +LGM L+L+T L+S Q+D+ +T +I G AL++LINE+LD +K+
Sbjct: 898 AFLANMSHEIRTPMNAVLGMTGLMLETPLNSEQQDFIETIRISGDALLSLINEILDLSKL 957
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
EA ++ LE + F+L L++VL L + + NKG+E+A + VP + GD GR RQI+
Sbjct: 958 EAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQLQGDAGRLRQILM 1017
Query: 504 NLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLE 563
NL+ N++KFT G + V+ L R++ T A T+ T+ G+ + Q +
Sbjct: 1018 NLISNAIKFTSNGEVVVRAEL--RSLSSTTA---TIYFAITDTGLGITFEDQCRLFTPFT 1072
Query: 564 AADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERV 623
D N+ GG TG+G+ + Q
Sbjct: 1073 QVDASNT-----------------------RKYGG------------TGLGLAICKQ--- 1094
Query: 624 FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEY 683
LV LM G+I SR GS F F F +
Sbjct: 1095 ---------------------------LVSLMGGEIGVESRLGKGSKFWFEVTFA---QQ 1124
Query: 684 VFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS----IKDAS 739
++ +S+ E L + +VVD+ + + R G++V ++S +K
Sbjct: 1125 LYPISSESERELLI----NRRLLVVDDNATNRKIIHHQATRWGMLVDQAASATIALKAIE 1180
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
TAK + D D+ + E D GE K N + LP ++L +TN
Sbjct: 1181 ETAKQ--KNLYDIAVIDMHMPEVDGMTLGEQI---------KANSAIAGLPLIMLTSTN- 1228
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN----------- 848
+DE +A GFA ++KP++ S + + +L T+ K +
Sbjct: 1229 QRDEIQRALKIGFA-AYLVKPVKPSRLLDTIMTILGTQIKEETEVRSQEFKLKDYENNSN 1287
Query: 849 ---------GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
FH+ +IL+ +DN VN+ VA L+ G + + A + K L L
Sbjct: 1288 DHSSSSRLLARDFHK-----LRILLAEDNLVNQKVALKQLQSLGYSADVAGNGKEVLQLL 1342
Query: 900 QS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ P +D MD QMP +DG E T+ I + + + ++ V ++
Sbjct: 1343 EKIP--YDLILMDCQMPVLDGLETTKEIHRWQESS---FVSSRRPV------------VI 1385
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
AMTA+ + CL GMD Y+SKP +E L L ++
Sbjct: 1386 AMTANAMKEDQQMCLDAGMDDYLSKPVIKEKLAAALQRW 1424
>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 888
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 190/639 (29%), Positives = 288/639 (45%), Gaps = 117/639 (18%)
Query: 367 KMQELKVR---AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
K QEL+V AE A AKS FLA +SHEIRTPMN ILGM L L T L Q DY
Sbjct: 140 KNQELEVAYELAEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTRLDPQQFDYVSKI 199
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
Q + L+ +IN++LD +KIEA KL+LE + F+L +L+++ +L EK+ KGIEL V
Sbjct: 200 QRSAQHLLGIINDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEV 259
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
++ + GDP R QI+ N N+VKFTE+G I VKV E+ E LL+
Sbjct: 260 DHQLDTLLYGDPLRLGQILINYANNAVKFTEQGEILVKVSCLEKQ------PQEVLLHCS 313
Query: 544 TEE-GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
++ G+ S Q + AD + K+ GG
Sbjct: 314 VQDTGIGMSQEQQQRLFQSFQQADSSTT-RKY----------------------GG---- 346
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TG+G+ +S + L ELM G++
Sbjct: 347 --------TGLGLAIS------------------------------RKLAELMGGEVGVQ 368
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
S P GSTF FTA G+ + + S DL +G + +V D+ + L
Sbjct: 369 SEPGRGSTFWFTARLGRGRRRS----RYLPSLDL----RGRRMLVADDSASARTIMAALL 420
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWK 781
+ +V + S A + +E + QP +++L+ D + G D + L +
Sbjct: 421 RSMSFVVDTAES----GQQALQMIAGAEQEGQPYEVVLL--DWHMPGLDGIETGRRLIAR 474
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
G + P +++ ++ +A GF D V++KP+ AS++ V+ ++
Sbjct: 475 GMG---QRPYRVMVTGYGREEVFRQADTAGF-DRVLVKPVCASVL---FDTVIGLFGQQA 527
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ + H G +IL+ +DN +N+ VA L+ GA V A + AL+ +
Sbjct: 528 SPLTFKPPQATHHYRFDGLRILLAEDNELNQQVALELLRAVGADVSIAGNGAIALEMVAQ 587
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
H +D MD+QMP MDG ATR +R+ E H PILAMT
Sbjct: 588 TH-YDLILMDMQMPVMDGLAATRLLREREDVGQ-------------------HTPILAMT 627
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
A+V+ + CL GMD +++KP + + LY L ++ S
Sbjct: 628 ANVMAGDRERCLAAGMDDHIAKPIDPDRLYAALQRWATS 666
>gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
Length = 1224
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 187/667 (28%), Positives = 308/667 (46%), Gaps = 114/667 (17%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
F I LL+G + A +E H + E + A+AA+ AKS FLA +SHEIRTPMN
Sbjct: 440 IFFAIILLMGLLANKAH---SALEAFAHSLAEARDEADAANQAKSDFLANMSHEIRTPMN 496
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
I+GM L L TDL+ QR+Y ++ L+ LIN++LD +KIEA KL++E V F+L
Sbjct: 497 AIIGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIENVDFHLE 556
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+LD++ +L ++ +G+EL + V VP TNL+G+ ++ G I
Sbjct: 557 NVLDNITNLVGLRASERGLELLIQVDRDVP--------------TNLIGDPLRL---GQI 599
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
+ + VK TE+G +
Sbjct: 600 LINL---SNNAVKF-----------TEKGEVK---------------------------- 617
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
I+++ + +D+ L V D+GIG+ +++F F QADSST+R Y
Sbjct: 618 -----------ISILVAERHGDDIKLKFSVSDSGIGMTQEQADKLFNKFTQADSSTTRKY 666
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
GGTG+GL+ISK L +LM G I + GSTFSFT V I Q++ +P
Sbjct: 667 GGTGLGLAISKELSQLMGGDIQVSTELGKGSTFSFT-----ISTRVSHSITQNRIV-VPA 720
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DI 757
LK +VVD+ + L L + + +S+ +A L S++DK P D+
Sbjct: 721 SINHLKVLVVDDNASARLIVGDILESLKLTPTLCASVDEAIVE----LHSADDKSVPFDL 776
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFA-DTV 816
I+ + W + G + L + + + PK+++L ++ + GF ++
Sbjct: 777 IISD---WKMPKRDGVDL-LAELNKGLSLSRAPKIMMLTAYGREELTEAISERGFKIPSI 832
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF-HQGLLRGKKILVVDDNGVNRMVA 875
+ KP+ +S + + + ++ R + + + + L G IL+V+DN +N+ +A
Sbjct: 833 LDKPITSSHLYDSIVSLYGLDSDRVSRSELEQQNQLANVQQLAGANILLVEDNEINQELA 892
Query: 876 AGALKKFGATVECAASAKAALDKLQSPHC----FDACFMDIQMPEMDGFEATRRIRQMES 931
L+ V A + + A++ FD MD QMP MDG+EAT+ IR
Sbjct: 893 TELLEGQQIKVTVAENGQQAIELYHKATADGAPFDGILMDCQMPVMDGYEATQYIRH--- 949
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
+ ++ PI+AMTA+V+ ++ L GM ++KP + +++
Sbjct: 950 -----------------EIKDVKTPIIAMTANVMERDKEKALSSGMSDIIAKPIDVGSMF 992
Query: 992 RELAKFF 998
LA +
Sbjct: 993 ATLANWI 999
>gi|334119354|ref|ZP_08493440.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333458142|gb|EGK86761.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 2016
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 182/633 (28%), Positives = 297/633 (46%), Gaps = 86/633 (13%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ + AEAA AKS+FLA +SHEIRTPMN ++GM LLLDT+L + QRD+ +T + G
Sbjct: 1317 LEQTRREAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNSG 1376
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+++IN++LD +KIE+ KLELE +LR +++ + + K+ KGI+L + +
Sbjct: 1377 DTLLSIINDILDFSKIESGKLELEMYPLSLRDCIENAIDQLAVKADQKGIDLGYLIYPQT 1436
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P+F+LGD R RQI+ NL+ N +KFTE G + + V + ++V +D
Sbjct: 1437 PKFILGDVTRLRQILVNLLNNGIKFTETGEVTISV---QASLVDSD-------------- 1479
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
T+S E + S + + I G A+ ++ + + D +
Sbjct: 1480 ---------KTIS--EPGNLSESLYEIEFAIQDTGIGIPANRLDRLFKSFSQVDASTTRQ 1528
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
TG+G+ +S + M M S H GGT + Q R +
Sbjct: 1529 YGGTGLGLAISKRLSETMNGMMWVESRG-HVGGTPSP-----------KWQAGQPHRITM 1576
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF FT V + E I ++ P G + ++VD++P + G+
Sbjct: 1577 GSTFYFTIVAPAVAIELGEPI------EMVPELSGKRLLIVDDQPTNRQILTLQAQSWGM 1630
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQLLDWKPNGHV 786
++ + S +A + ++G T D+ +++ + G A + P H
Sbjct: 1631 QIRAAQSAVEALNWLESGETF-------DVAILDMQM---PQMHGLTLASAIHQHPKCH- 1679
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS---TENKRQAG 843
+LP L+LL + + A + FA + KP++ S + L VL T+ ++
Sbjct: 1680 -RLP-LVLLTSMGYPEASSSALSTHFA-AFLSKPIKQSQLYQILIHVLQAQPTKVQQHLP 1736
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
V + Q L +IL+ +D+ VN+ VA L++ G + AA+ L+ L
Sbjct: 1737 ISVEDDMKLAQRL--PLRILLAEDHLVNQKVALLLLERLGYRADIAANGLEVLEALHR-Q 1793
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
+D MD+QMPEMDG EA+RRI Q E A + I+AMTA+
Sbjct: 1794 PYDLVLMDVQMPEMDGLEASRRICQ-EWPAPPRPW------------------IIAMTAN 1834
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ CL GM+ Y+SKP E L + L++
Sbjct: 1835 AMQGDRQLCLDAGMNDYISKPIRVEALIQALSQ 1867
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 20/146 (13%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK++L+VDD NR + + +G + A SA AL+ L+S FD +D+QMP+
Sbjct: 1603 LSGKRLLIVDDQPTNRQILTLQAQSWGMQIRAAQSAVEALNWLESGETFDVAILDMQMPQ 1662
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
M G I Q K + LP++ +T+ L
Sbjct: 1663 MHGLTLASAIHQ-HPKCH-------------------RLPLVLLTSMGYPEASSSALSTH 1702
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
++SKP ++ LY+ L +++P
Sbjct: 1703 FAAFLSKPIKQSQLYQILIHVLQAQP 1728
>gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
Length = 1053
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 187/654 (28%), Positives = 290/654 (44%), Gaps = 139/654 (21%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ E K +AE A KS FLA +SHEIRTPMN I+GM L L T+L+ QRDY
Sbjct: 283 ELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSS 342
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L+ +IN++LD +KIEA KL +E + F+L +L +V + +K+ +KG+EL + +
Sbjct: 343 ATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPRE 402
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P ++GDP R Q++ NLV N+VKFTE+G I V V + ER + LL ++
Sbjct: 403 IPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVGERQPGRI-----KLLFHVSDT 457
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ + N ADG + K+ GG
Sbjct: 458 GIGMTEKQTRNLFQAFTQADGSTTR-KY----------------------GG-------- 486
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S R + M+ + IS S+P
Sbjct: 487 ----TGLGLSIS---RRLVELMEGE---------------------------ISVTSQPD 512
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG-LKAVVVDEKPVRAAVTQYHLNRL 725
+GS F+F A F D Q+ + + P G ++A++VD+ + Q L+ L
Sbjct: 513 MGSCFTFNAWFDV-------DENQAPHQKVVPDVLGSIRALIVDDNDHAREILQDMLSML 565
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---KP 782
I TA NG+ + K + + FN +DW +
Sbjct: 566 AI----------PPETAANGVEALR-KLEQGV----------ANGKPFNLVFMDWNMPEM 604
Query: 783 NG--------HVFKL---PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
NG H F PK++++ T KD+ + + + KP+ S + L
Sbjct: 605 NGIETTRAIRHSFSAEHQPKVVIV-TAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLLV 663
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L +K QA G +RG ++L+ +DN +N+ +A ++ V A +
Sbjct: 664 N-LFVGSKAQASVAARISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIANN 722
Query: 892 AKAALD----KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
K ALD L++ FD FMD+QMP MDG+EA R IR T
Sbjct: 723 GKEALDHLAHSLETQQRFDIIFMDLQMPVMDGYEAARHIR------------------ST 764
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ D+ P++AMTA + + CL GM+ +VSKP + + LYR +AK+ + K
Sbjct: 765 PEHDD--TPLIAMTAHAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKWCEGK 816
>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
Length = 1334
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 187/669 (27%), Positives = 309/669 (46%), Gaps = 135/669 (20%)
Query: 352 YGAAIHIVKVEDDFHK-------MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML 404
YG A+ ++ + D + +Q + AE A+ AKS FLA +SHE+RTPMN ILGML
Sbjct: 546 YGNAVLMMGINRDITQQREAENILQSARQAAEEANKAKSAFLANMSHELRTPMNAILGML 605
Query: 405 ALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
LL T L++ Q DYA ++ + L+ L+N++LD +KIEA K+ LE + F++ +L D+
Sbjct: 606 TLLRKTGLNNKQADYAVKSEAATRTLLRLLNDILDFSKIEAGKMVLECIPFDIHVMLRDL 665
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI--FVKV 522
+ S + K +E+ + +P+FV GD R +QI+TNL GN++KFTE+G + F+KV
Sbjct: 666 AVILSSNLKIKKVEVLFDIDPTLPQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLFIKV 725
Query: 523 HLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEG 582
+K D++ TL G + G+ + Q + G A+ + +F
Sbjct: 726 -------LKQDSQQVTLHFGVRDTGIGIAPEHQESIFGGFTQAEASTT-RRF-------- 769
Query: 583 FQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
GG TG+G+ +S + F+ M GG
Sbjct: 770 --------------GG------------TGLGLVISQR---FVALM----------GG-- 788
Query: 643 IGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV--FGKCKEYVFEDIKQSKSEDLPPGF 700
++ S+P GS F FT V ++ S
Sbjct: 789 ---------------RLELESQPGQGSLFHFTITLPLSSPSNLVIDNEIPSTLVSRAQVL 833
Query: 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILV 760
L+ +VVD+ P + + R+G +K + + + A + K Q D +
Sbjct: 834 NHLRVLVVDDNPTACDL----IKRMGESLKWTVDVATSGDQALQLM-----KQQRDNGIT 884
Query: 761 EKDCWISGEDSGFNAQLLDWKPNGHVFKL------PKLILLATN-----ISKDECDKAKA 809
+I + G + W+ + +V +L P ++++ + + + E D+A
Sbjct: 885 YGALFIDWQMPGLDG----WQTSKYVRELMPADNAPMIVMITAHDREMLLQRSEEDQALL 940
Query: 810 GGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNG 869
G+ ++KP+ ASM+ + LS + + SS+ L ++L+V+DN
Sbjct: 941 DGY----LVKPITASMLLDSVIDALSERKQPDITKPRVAESSYQ---LSDIQLLIVEDNL 993
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQ 928
N+ +A L+ GATV A + K A++ L+ +P FD MD+QMP MDGF ATR IR
Sbjct: 994 NNQQIARELLEDEGATVTIANNGKEAIEILERTPALFDVVLMDLQMPVMDGFNATRYIR- 1052
Query: 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE 988
ES ++ LPI+AMTA+ + + D CL GM+ ++ KPF+
Sbjct: 1053 -ESLGLKE------------------LPIIAMTANAMASDRDACLAAGMNDHIGKPFDLN 1093
Query: 989 NLYRELAKF 997
NL + + K+
Sbjct: 1094 NLIQTIRKY 1102
>gi|409438237|ref|ZP_11265324.1| Sensor protein [Rhizobium mesoamericanum STM3625]
gi|408750103|emb|CCM76491.1| Sensor protein [Rhizobium mesoamericanum STM3625]
Length = 944
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 186/633 (29%), Positives = 276/633 (43%), Gaps = 122/633 (19%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++ L RAEAAD KS+FLA +SHEIRTPMNG+LGM LL TDL + Q+ + G
Sbjct: 395 LERLLSRAEAADRVKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDTRQKTFIDIIVKSG 454
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KI+A K+ L FNL ++DV +L S + K IEL V + +
Sbjct: 455 NALVTIINDILDFSKIDAGKMRLRPTTFNLLEAIEDVATLLSSTASEKNIELLVRTAPDL 514
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P V+GD GRFRQIITNLVGN+VKFTERGH+ + V A A+DE + + E+
Sbjct: 515 PSAVIGDAGRFRQIITNLVGNAVKFTERGHVLLDVGFA------PGAQDEIMASIRVED- 567
Query: 548 VCRSGTGQFNTLSGLEAADGR--NSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
+G+ D + + +DKF ID+ + +
Sbjct: 568 ------------TGIGIPDDKLESIFDKFSQ-IDSSSTRRH------------------- 595
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
E TG+G+ ++A LV+L G + SRP
Sbjct: 596 ---EGTGLGLAITA------------------------------GLVDLFGGYLEVDSRP 622
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GS FS F Q + LP KG +VVD+ V + L
Sbjct: 623 GEGSVFSVNLPFVVAA-------AQLAPKPLPVNVKGAHVLVVDDNAVNRQILTEQLALW 675
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
G ++ +D A + + +F + V D I G + A+ L + +
Sbjct: 676 GF---DGAAAEDGP--AAFAVLEAAHEFGLAVDAVVLDYQIPGMNGAEIARKL--RADSR 728
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
+L + L + ++S E + A G A +MKP RA+++ + V+ +Q
Sbjct: 729 FERLAIIFLTSMDMSGTEKEFAALNGQA--YLMKPARANVLRKTIADVVRASRTKQVCAA 786
Query: 846 -------------VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+P +LV +DN VN++V L+ G + +
Sbjct: 787 AIMQSSAEAMPSPLPKAEPSATAPTELVDVLVAEDNDVNQIVFTQILRGSGHSFLVVGNG 846
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A+D H MD+ MP M+G +ATR IR E G R
Sbjct: 847 QEAVDAWHR-HTPRIIMMDVSMPVMNGHDATRAIRDRER--------------GQGHR-- 889
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
+PI+ +TA + A D CL+ GMD Y+SKP
Sbjct: 890 --VPIIGVTAHALEADRDLCLEAGMDDYMSKPI 920
>gi|434393415|ref|YP_007128362.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265256|gb|AFZ31202.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 1079
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 183/637 (28%), Positives = 295/637 (46%), Gaps = 129/637 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++++ K AEAA KSQFLA +SHEIRTPMN I+GM LLL T LS Q+++ +T +
Sbjct: 418 QELEKAKTDAEAATRVKSQFLANMSHEIRTPMNAIVGMANLLLSTPLSQQQKEFLETIRT 477
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
L+ L+N+VL+ +KIE+ KLELE FNLR +++ + + + K+ K IELA +
Sbjct: 478 SSNVLLILLNDVLELSKIESGKLELEQRAFNLRTCVEEAVEILAFKAAEKNIELAYIIHP 537
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
P +N+VG+ + + + V+L + VK + E +++
Sbjct: 538 DTP--------------SNIVGDVTRLRQ-----ILVNLLSNS-VKFTHQGEVVVSVTAR 577
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
E C N L+G +++ +
Sbjct: 578 ELECA------NKLAG-----------RYE----------------------------IQ 592
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V+DTGIGIP+ E +F F Q D+S +R YGGTG+GL+I+K L E+M+G+I ++
Sbjct: 593 FAVKDTGIGIPIETIEHLFQAFSQGDASITREYGGTGLGLAIAKQLCEMMQGRIWVETQA 652
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-----FKGLKAVVVDEKPVRAAVTQY 720
GSTF FT + VF PP F + ++V + P +
Sbjct: 653 DQGSTFYFT-IATTIDTSVF-----------PPDSCALHFARKRMLIVVDHPTILQSLVW 700
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS-GEDSGFNAQLLD 779
GI+ S++ ++ A+ + D D + + D I+ +DS
Sbjct: 701 QAQSWGIV---PHSLEPTAALAQIQQGTLFDVVIVDAQIHQSDALIAICQDS-------- 749
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
KLP LILL T +++ + + + + KP++ S + + L Q+ +
Sbjct: 750 --------KLP-LILLTTITTQNVLPQIAQREYV-SYLTKPIKTSHLYSILSQIWDQLLE 799
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+ S+F L +IL+ +DN VN+ +A L+ G + A++ LD L
Sbjct: 800 SDTNN---SDSTFAAHL--PLRILLAEDNIVNQKIALHILQSLGYHADVASNGLEVLDTL 854
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ + +D MD+QMP+MDG ATR+I Q G+ E+ I+A
Sbjct: 855 RRQN-YDVVLMDVQMPKMDGLTATRQIVQ----------EFGA---------EIRPRIIA 894
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
MTA+ + +ECL GM+ Y+SKP + E L + L K
Sbjct: 895 MTANAMQEDKEECLAAGMNDYISKPIQVEELTQALLK 931
>gi|378763933|ref|YP_005192549.1| putative two-component hybrid sensor and regulator [Sinorhizobium
fredii HH103]
gi|365183561|emb|CCF00410.1| putative two-component hybrid sensor and regulator [Sinorhizobium
fredii HH103]
Length = 989
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 186/633 (29%), Positives = 289/633 (45%), Gaps = 113/633 (17%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A +AKS+FLA +SHEIRTPMNG++G+ LL T+LS QR Y + L+ LI
Sbjct: 339 AEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTELSEQQRRYVSIILHSAETLMDLI 398
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA +LELE + F LR L D L ++++ +KG+ELA + +VP+ ++GD
Sbjct: 399 NDILDFSKIEAGRLELETIPFMLRDTLGDTLQTLAKRAADKGLELACHIPPEVPDHLMGD 458
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
P R RQII NLVGN++KFTE G + V V L G ++G R
Sbjct: 459 PTRLRQIIVNLVGNAIKFTENGEVVVDVTLV----------------GEGDQG-ARLQFD 501
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
+T G+ AA ++ F Q++ S GG TG+G
Sbjct: 502 VRDTGIGIPAAQQERIFEAFA--------QADTSTTRQY---GG------------TGLG 538
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ ++AQ L E M G + S+P VGS F+F
Sbjct: 539 LAIAAQ------------------------------LAEKMGGPMQLDSKPGVGSVFTFA 568
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
A F E + + + +L +G + +VVD+ A + L + + M
Sbjct: 569 ADFVLAPEA--QKARPVREAEL----RGRRVLVVDDN----ATNRQILEEIVVNWGMIPI 618
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQLLDWKPNGHVFKLPKLI 793
+ + A N L S PD+ L++ + SGF A + +P K +++
Sbjct: 619 VAVDGAAALNALEQSSGAL-PDLALLD---VMMPRMSGFELAACMRLRP---ALKETRIV 671
Query: 794 LLAT-NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
++++ DE K +++KP++ S + + L + G + +
Sbjct: 672 MMSSAGRPSDEALLRKLD--VSRLLVKPVKQSDLLNAITNALGFSMREDEVEGSASPARL 729
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
GL G +L+ +D VNR VA L K G VE + + A++ + +D MD+
Sbjct: 730 RTGL--GLTVLLAEDGAVNRQVAVDLLTKRGHRVEAVGNGQEAVEAAEH-GSYDLVLMDV 786
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
MP MDG AT +++ A+ + LPI+A+TA A + C
Sbjct: 787 HMPVMDGLAAT------------------AAIRALARAECARLPIIALTASATPADRERC 828
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
L GMDGYV+KPF L+R + + ++ KP S
Sbjct: 829 LAAGMDGYVTKPFRASELFR-VVEQYQPKPASA 860
>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
domain-containing protein [Geobacter bemidjiensis Bem]
gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter bemidjiensis Bem]
Length = 818
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 186/638 (29%), Positives = 290/638 (45%), Gaps = 122/638 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E+ +++ A++A+ AKS FLA +SHEIRTPM G+LGM LLL+T LS Q +
Sbjct: 164 QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTYLSKEQARF 223
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
++ + G+AL+ +IN +LD +KIEA ++ELE + F+L + D +++F++ + KGI L
Sbjct: 224 VESVRCSGEALLGIINNILDFSKIEAGRMELEMIPFDLHQLTADAVAMFADDAARKGIAL 283
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER-TMVKTDAKDET 538
+ + +P GDPGR RQ++ NL+GN+VKFT G + + V L R +V+ +D
Sbjct: 284 SCRIEPGLPVMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLVRRPALVRVTVED-- 341
Query: 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
T G+ R + +D F A+G +S M GG
Sbjct: 342 -----TGIGISREAQERI--------------FDHF-----AQGDES------MTRRYGG 371
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
TG+G+ ++ Q L ELM G
Sbjct: 372 ------------TGLGLAIAKQ------------------------------LTELMGGG 389
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ S P GS+FSFT + K E + +A+V + P +
Sbjct: 390 MELSSEPGKGSSFSFTVALEPHQ-------KAPPPERSYSALRSKRALVATDDP---ELQ 439
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ L +G + + DA + + D LV D ++G D A +
Sbjct: 440 ETLLELMGGLGMDLDCVGDAPGALCRLVAAPFD-------LVLMDHCVAGTDGLALAAAI 492
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
GH +L+LLA ++ + A + + L ++ A L L E
Sbjct: 493 RSVAVGHSV---RLVLLAEEPEAAPAERVREIEVA-LLSRRNLTQEVLYAALVSALGMEE 548
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
++ G P L R +++L+V+DN VN+ V G L+ G V+ A + AAL +
Sbjct: 549 EQGGGEEAPT-------LRRLRQVLLVEDNVVNQEVGRGLLESLGCRVKVAENGLAALKE 601
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
LQ FD FMD QMP +DG EATRRIRQ E +G++ R +PI+
Sbjct: 602 LQR-GAFDLIFMDCQMPVLDGLEATRRIRQRE--------------EGSSAR----VPII 642
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
A+TA + + CL G D Y+SKPF E L + + +
Sbjct: 643 ALTAYAMKGDREACLAAGADDYLSKPFSREQLSKSIER 680
>gi|442609712|ref|ZP_21024446.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441748728|emb|CCQ10508.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 1267
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 194/661 (29%), Positives = 287/661 (43%), Gaps = 124/661 (18%)
Query: 353 GAAIHIVKVEDDFHKMQELKVR---AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
G V + HK +EL+ AE A AKS+FLA +SHEIRTPMNG+LGML LL D
Sbjct: 713 GRVWSFTDVTEAHHKQEELQKSQEIAEKASKAKSEFLANMSHEIRTPMNGVLGMLNLLRD 772
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
T L+ Q + A + L+ ++N++LD +K++A KLELE + FN +L ++ +
Sbjct: 773 TKLNDEQSHKLRLATTSAENLLTILNDILDFSKVDAGKLELEFIDFNPARLLGELAETMA 832
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529
K+ K +EL + + D +FV GDP R RQI+ NL+GN++KFT++G + V R
Sbjct: 833 LKTSEKQLELILDLRDLPLQFVKGDPSRLRQILNNLIGNAIKFTQQGEVIV------RAC 886
Query: 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589
+K + K ++ G+ S + Q S AD + +H
Sbjct: 887 MKQEDKGWRFTCSVSDTGIGISKSAQNRLFSAFTQADASTT----RHF------------ 930
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
GG TG+G+ +I K
Sbjct: 931 -------GG------------TGLGL------------------------------AICK 941
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVV 708
L +LM G IS S+ GSTF F F D + + +P K L +VV
Sbjct: 942 QLCQLMNGDISLESKENEGSTFHFNLFF---------DSSEHQPITIPRVDLKSLHVLVV 992
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WIS 767
D+ V L GI S D+ A L ++K ++ +++ +
Sbjct: 993 DDNQTNREVICGQLTNWGI----ESVAVDSGRQALETLNEYQNKRSFNLAILDMQMPSMD 1048
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
GE G + F KL+++ + E + GF + KP+ A +
Sbjct: 1049 GEQLGRAIR------EQARFDSLKLVMMTSIGQLGESHRFADIGF-NAYFPKPVTAEDLF 1101
Query: 828 ACLQQVLSTENKRQAGRGVPNGS--------SFHQGLLRGK-KILVVDDNGVNRMVAAGA 878
L +LS ENK +A + HQ L +IL+V+DN VN++VA+
Sbjct: 1102 NAL-SLLSEENKARADLPMITKHLISEVEPPPHHQSSLNSNARILLVEDNMVNQIVASKM 1160
Query: 879 LKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
L + T + A + AL+ L QS +D MD QMPEMDGFEAT IR
Sbjct: 1161 LGQMSLTCDVANNGALALEALKQSTPSYDLVLMDCQMPEMDGFEATTAIRA--------- 1211
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
G A + I+AMTA+ +H+ CL+ GM+ YVSKP + L L K+
Sbjct: 1212 --------GIAGEQNKAVTIIAMTANAMHSDKLRCLEVGMNDYVSKPINLQTLRNTLEKW 1263
Query: 998 F 998
Sbjct: 1264 I 1264
>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1152
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 188/628 (29%), Positives = 289/628 (46%), Gaps = 106/628 (16%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E + ++L A A+ AKSQFLA +SHEIRTPMNGI+GM ALLLDT L Q +
Sbjct: 490 QLEASIKQAEQLANEAFVANNAKSQFLANMSHEIRTPMNGIIGMAALLLDTPLDGQQTVF 549
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
QT + AL+ +IN++LD +K+EA KLELE F+L+A L+ + + + K+ KG+E
Sbjct: 550 VQTVRKSAHALVTIINDILDFSKVEAGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLEY 609
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
A + VP+ ++GD R RQ++ N+VGN+VKFT+ G + +++ +M D TL
Sbjct: 610 ACIMHPDVPDALIGDSIRLRQVLVNIVGNAVKFTDAGEVSLEI-----SMAAMDDARCTL 664
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
L + G +GL DK + + +A Q+++S+ GG
Sbjct: 665 LFSIKDTG------------AGLPE-------DKIETVFEAFA-QADSSVTRKF---GG- 700
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TG+G+ +S S R GG +I
Sbjct: 701 -----------TGLGLAIS-------------QSLVRLMGG-----------------EI 719
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+R G+ F FTA F + E + +S + P K ++VD+ P
Sbjct: 720 IAENREARGAHFRFTASFA-----LQEQGAEHESSAIDPCLADKKILIVDDCPATRTSIS 774
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLL 778
L + G + + +S +A L + DK P + +LV++ + D +A +
Sbjct: 775 LILQQWGCLCREAS----GGRSALEQLQRAVDKHAPFNAVLVDQ----AMPDMDGSALIQ 826
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
K N ++ +L L+A + AK+ A V+ KP+R + L + N
Sbjct: 827 SIKEN-PAYEGARLALMAP-LGAPGLKAAKSNQDAAAVLTKPVRKKQLYNLLLDLFG--N 882
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ P + +L+V+DN VN+MVA G L+K G + + AL+
Sbjct: 883 APETCAAAPEQETKSAQAASEFTVLLVEDNQVNQMVAKGILRKLGYKTLVVENGQEALEF 942
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L D MDIQMP MDG EATRRIR DG K + PI+
Sbjct: 943 LAEKQV-DIILMDIQMPVMDGLEATRRIR-----------------DGRHKVLDPGAPII 984
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFE 986
AMTA + ++CL GMD Y++KP +
Sbjct: 985 AMTARAMKGDREKCLDAGMDDYITKPID 1012
>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1333
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 206/726 (28%), Positives = 320/726 (44%), Gaps = 150/726 (20%)
Query: 303 LHESELDFGDSFRKHKMICRYHQKASTPWT---------ALTTAFFLFVI----GLLVGY 349
LH EL + FR+++ R + +P +L +V G + G+
Sbjct: 590 LHARELIGDEMFRRNEPSMRAALRGESPRLQRALPHTDGSLRETLIAYVPDRQDGQVRGF 649
Query: 350 ILYGAAIHIVKVEDDFHKMQELK-------VRAEAADVAKSQFLATVSHEIRTPMNGILG 402
I+ + I +KV + +M L + AE A AKS FLA +SHEIRTPMN I+G
Sbjct: 650 IVVVSDITEIKVAE--QQMAALNAQLAARAIEAEGATRAKSAFLANMSHEIRTPMNAIIG 707
Query: 403 MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILD 462
+ L+ S QR+ K L+ +IN+VLD +KI+A KL LE FNL +L
Sbjct: 708 LTHLMARDTRDSLQRERLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNLDEVLS 767
Query: 463 DVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
L E + KG+EL V +D++P + GDP R Q + NL+ N+VKFT G + ++
Sbjct: 768 RAFELVGESANEKGLEL-VLDTDRLPSHLRGDPTRLSQALINLLANAVKFTHAGWVRLRG 826
Query: 523 HL----AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
L +R V+ + +D TG+ G+E ++F L
Sbjct: 827 ELLAEDRQRVQVRFEVQD----------------TGE-----GIEP-------ERFGSLF 858
Query: 579 DAEGF-QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F Q++AS +GG TG+G+ L
Sbjct: 859 NA--FEQADASTTR---RHGG------------TGLGLAL-------------------- 881
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
++ LV LM G++ S P VGSTF FTA G+ E ++ +P
Sbjct: 882 ----------TQHLVTLMGGEMGVRSEPGVGSTFWFTAWLGRAAE------AGERASAVP 925
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
+GL+A++VD+ P + L G+ + D+ + A + S +P D
Sbjct: 926 --LQGLRALLVDDLPEALSAIGDRLQHFGLRI----DPLDSGTAALQRVRSEISAGRPYD 979
Query: 757 IILVEKDCWISGEDSGFNA--QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
+ L++ W G QL + G +P IL+ + +A+ G AD
Sbjct: 980 VFLID---WRMEPLDGIETMRQLRELLGAG----MPPAILVTAFNNTAMWQQAR-GVQAD 1031
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLR--GKKILVVDDNGVNR 872
V++KP+ AS + L +VL + + ++ P G Q L R G+++L+ +DN +N+
Sbjct: 1032 AVLVKPITASALHDTLMRVLRSRSATRSAEPAPPGQGEAQLLRRHAGQRVLLAEDNPINQ 1091
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
VA L+ G VE A +A++ L +D MD+QMPEMDG ATR IR +
Sbjct: 1092 EVANELLQGVGLVVETAVDGASAVE-LACSRAYDLILMDMQMPEMDGIAATRAIRARLGR 1150
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
A +PI+AMTA+ CL GM+ +V+KP + LY
Sbjct: 1151 A---------------------IPIVAMTANAFSEDRQACLDAGMNDHVAKPVDPGTLYA 1189
Query: 993 ELAKFF 998
L ++
Sbjct: 1190 TLLRWL 1195
>gi|428225220|ref|YP_007109317.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427985121|gb|AFY66265.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 2144
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 182/630 (28%), Positives = 281/630 (44%), Gaps = 111/630 (17%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++ K A+AA+ +KS FLA +SHEIRTPMN ++GM +LL DT+LS Q D+ +T + G
Sbjct: 1473 LETAKREADAANRSKSDFLAMMSHEIRTPMNAVIGMASLLFDTELSPQQMDFVETIRSSG 1532
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+ L+ LIN++LD +KIE+ KL LE FNLR ++D L L + ++ KG+EL +++
Sbjct: 1533 EVLLTLINDILDFSKIESGKLHLEEQRFNLRRCVEDALDLIATQATKKGLELICWIASGT 1592
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE- 546
P GD R RQ++ NL+ N++KFT+ G + V V + + NGG +
Sbjct: 1593 PLHFQGDVTRLRQVLVNLLSNAIKFTQAGEVMVSV------------ESQPCSNGGCYKL 1640
Query: 547 --GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
V +G G D+ +HL FQ + + + M G
Sbjct: 1641 HFAVHDTGIGIHP--------------DQLRHL-----FQPFSQVDSSMTRRYGG----- 1676
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
TG+G LSISK L E+M G++ S
Sbjct: 1677 ------TGLG------------------------------LSISKRLCEMMGGRVWVESE 1700
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
VGSTF FT E + ED+ ++ P KG + +V D+ +
Sbjct: 1701 VGVGSTFHFTVRLQSISEPMSEDVW----SNVLPKMKGKRVLVADDNQTTRETIARQIQE 1756
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
+ V+ ++S +A + Q D+++++ SG AQ+ P G
Sbjct: 1757 WEMQVQTAASGAEA-------IAHLHQLSQYDLVILDHQM-PSGNGFDIAAQIRQ-LPGG 1807
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
LP +++++T I + +A A ++ KPL+ S L Q+ T R
Sbjct: 1808 Q--GLP-IVVMSTGI-ESPSPEAIADIGVTALLAKPLKQSQFYDVLAQIFLTGQVMLPQR 1863
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
S IL+V+D VN+ + L++ G + A + A+ L+
Sbjct: 1864 SARLMSGDRLSEQYPLHILLVEDVPVNQKLVLQMLQRLGYRADVANNGHEAIAALRR-QP 1922
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
+D MD+QMPEMDG EATR IR+ D T +D I+AMTA
Sbjct: 1923 YDVVLMDVQMPEMDGLEATRWIRRQ---------------DPTLLKDPY---IIAMTAHA 1964
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYREL 994
+ + CL GM+ Y+SKP E L + L
Sbjct: 1965 MQGDRELCLDAGMNDYLSKPIRLEGLVKAL 1994
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
++GK++LV DDN R A ++++ V+ AAS A+ L +D +D QMP
Sbjct: 1732 MKGKRVLVADDNQTTRETIARQIQEWEMQVQTAASGAEAIAHLHQLSQYDLVILDHQMPS 1791
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
+GF+ +IRQ+ GG LPI+ M+ + + + G
Sbjct: 1792 GNGFDIAAQIRQL---------PGGQG-----------LPIVVMSTGIESPSPEAIADIG 1831
Query: 977 MDGYVSKPFEEENLYRELAKFF 998
+ ++KP ++ Y LA+ F
Sbjct: 1832 VTALLAKPLKQSQFYDVLAQIF 1853
>gi|333983791|ref|YP_004513001.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Methylomonas methanica MC09]
gi|333807832|gb|AEG00502.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Methylomonas methanica MC09]
Length = 1677
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 188/642 (29%), Positives = 283/642 (44%), Gaps = 135/642 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A+A AKS+FLAT+SHEIRTPMNG++GM LLL+T+LS Q A TA K+L+++I
Sbjct: 307 AQAGSKAKSEFLATMSHEIRTPMNGVMGMTELLLNTNLSERQHRLADTAYRSAKSLLSII 366
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N +LD +KIEA KL+L A F++R +L+D L ++++ KG+EL + + +GD
Sbjct: 367 NNILDFSKIEAGKLQLLAGEFDVRQLLEDTTHLLADQAHRKGVELILSIPVDFDCVAIGD 426
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R RQ++ NL+GN++KFTE+G V++ L K E L N V +G G
Sbjct: 427 SERLRQVLVNLLGNAIKFTEQGE--VQLKLTPSLNPSNPEKIELLFN------VIDTGPG 478
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
D ++F+ I Q + SI GG TG+G
Sbjct: 479 ----------ID-----EEFQQYIFDSFTQQDGSITRRY---GG------------TGLG 508
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF- 673
+ +S Q LVELM + S P GS F F
Sbjct: 509 LTISRQ------------------------------LVELMDSDLMLHSTPGHGSRFYFK 538
Query: 674 -TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
T G E + D+ G++ +VVD+ + L + G V +
Sbjct: 539 LTLPLGSQTEIIKADVA---------ALNGIRILVVDDNATNREILTEQLQQWGAEVTCA 589
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKLPK 791
S P + + KD + + F +LDW P L K
Sbjct: 590 DS-------------------GPRALKLLKD--VGRQPFKFRIAILDWHMPYMDGLSLAK 628
Query: 792 LILLATNISKDE----------CDKAKAGGFADTVIM-KPLRASMIAACLQQVLSTENKR 840
I I+ D + + + + KP+ + CL++VL+ +
Sbjct: 629 AIQADPQINGLSLILLSSESVVIDTTQPNQYGISYYLNKPVFQKQLLTCLREVLA---RA 685
Query: 841 QAGRGVPNGSSFHQGL-LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
P G+ G LRG +IL+ +DN VN+ VA G L++ G V A + + A+D L
Sbjct: 686 PVNVSPPQGTKKTTGKGLRG-RILLAEDNLVNQEVAKGFLEQIGCRVYLANNGQEAVD-L 743
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
FD MD MP +DGF AT IRQ E ++ + + PI+A
Sbjct: 744 ALERTFDIILMDCHMPVLDGFSATISIRQHEQQSGKALT-----------------PIIA 786
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+TADV ++CL+CGM+ Y+SKPF + + L K+ ++
Sbjct: 787 LTADVQKGVEEQCLQCGMNDYLSKPFSFAQIEQTLKKWLPTQ 828
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 21/129 (16%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L ++ILVVDD+ R++ LK G + A S AL+KL++ D +D M +
Sbjct: 980 LNHEQILVVDDDPNFRLITCENLKAVGFEIVEAHSGNDALNKLKTVMP-DLIMLDAMMDD 1038
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
+DGFE + +R A R +PI+ T + + K G
Sbjct: 1039 LDGFETCKALR--------------------ADRTFADIPIIMSTGLDDIESINRAYKVG 1078
Query: 977 MDGYVSKPF 985
+V KP
Sbjct: 1079 ASDFVIKPL 1087
>gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
Length = 1183
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 178/648 (27%), Positives = 293/648 (45%), Gaps = 132/648 (20%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
++V++ +++ K++AE + AKS+FLA +SHEIRTPMNGI+GM L L T L+ Q++
Sbjct: 464 IEVDNRTKELEIAKIKAEESTKAKSEFLANMSHEIRTPMNGIIGMSHLALQTRLNDKQKN 523
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
Y + IC K L+ ++N++LD +KIEA KL LE V FNL +++++++ K +E
Sbjct: 524 YIEKIDICAKNLLNILNDILDFSKIEAGKLNLEKVEFNLFETIENIVNIIDFSVYEKNLE 583
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
L V V + GD R QI+TNL+ N++KFT G I V + + + + KD
Sbjct: 584 LVVSYGTDVGKNFYGDNLRLAQILTNLLSNAIKFTNDGQIGVYITKIDINRYQFEIKDTG 643
Query: 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
+ G TEE T F + S + R GG
Sbjct: 644 I--GLTEE----QQTKLFQSFSQADGGTTRKY--------------------------GG 671
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
TG+G+ +S Q L+ELM G+
Sbjct: 672 ------------TGLGLTISKQ------------------------------LIELMNGK 689
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S+ VGS F F + ED K ++ F+ K +VVD+ +
Sbjct: 690 IWVESQINVGSRFIF--------QIDLEDKNIDKKYNI---FQNKKVLVVDDNKTWHEIL 738
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG------ 772
+ L I V S K+A + K D+IL++ W E G
Sbjct: 739 ESILKMFNIEVYCVDSGKEAITHIKTT------NINYDLILMD---WNMPELDGIETTKK 789
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
N + D KP P +I++++ + + + AK G + + KP+ S++ L
Sbjct: 790 INEEYKDKKP-------PTIIMVSSFMQESIFELAKEAGI-ELFLNKPINPSILNDILSD 841
Query: 833 VLSTENKRQ-AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+ ++ KR+ + + + G IL+V+DN VN+ + G L+ + A +
Sbjct: 842 LFLSDFKRKNINEKIIDEAQLKTISFEGNNILLVEDNKVNQEIIIGLLENSKINFDIANN 901
Query: 892 AKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
K AL K+ ++P+ + MDIQMP MDG+EATR I+++ ++
Sbjct: 902 GKEALLKVKENPNKYHLILMDIQMPIMDGYEATREIKKINNE------------------ 943
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+A+TA+V+H ++ GM +++KP + + LY L+K+
Sbjct: 944 ----VPIIALTANVMHKDSEKTKAVGMQEHLNKPIKVDKLYSTLSKYL 987
>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
DM4]
gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
extorquens DM4]
Length = 703
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 188/639 (29%), Positives = 285/639 (44%), Gaps = 140/639 (21%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ E K RAEAA+VAKS+FLATVSHE+RTP+NGILGM LLLDT L QR Y + + G
Sbjct: 167 LDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSG 226
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL+ L++ +LD ++IEA +L+L A F++ A+++ V+ L + ++++KG+E+A+ ++D +
Sbjct: 227 KALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDL 286
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+GD R RQI+ V+LA + T A GG
Sbjct: 287 AALRVGDADRVRQIL-------------------VNLAGNAIKFTQA-------GGVGVS 320
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ RSG GQ EG L++
Sbjct: 321 LARSGEGQ------------------------GEG---------------------LVLT 335
Query: 608 VEDTGIGIPLSAQERV---FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
VEDTG GIP +ER+ F F Q D S S + GTG+GL+I++ LVE M G I S
Sbjct: 336 VEDTGPGIP---EERIPILFEEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARST 390
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
GSTF + + + P K ++V P +A L+R
Sbjct: 391 VGRGSTFRVVLPLPAAEGAMSPET---------PSLAPRKVLIVAASPYQAPFLARRLSR 441
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
G ++ + +++ A + L+ V D I+ G +A +
Sbjct: 442 SG----AAAVVVNSAEAALDALSG-----------VAFDALIADRSLG-DAAVRRLAAEA 485
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA----------------SMIAA 828
+ ++L + + E A GF D+ ++KP+RA S A
Sbjct: 486 ARCGVRCSLILLSPFDRREFGAPNAAGF-DSYLIKPVRARSLFDRLLEPRPAPARSPADA 544
Query: 829 CLQQVLSTENKRQAG--RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ S RQ + P + Q RG+++L+ +DN +N ++A AL++ GA V
Sbjct: 545 TAKTGTSQPGPRQPAPVKTTPGKTGSIQTAARGRRVLLAEDNPINALLATKALERLGAQV 604
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
A AL + FD +DI+MP +DG E RRIR E++ G S
Sbjct: 605 IHARDGLEALAAAEGQGPFDLALIDIRMPGLDGLETARRIRAREAE------TGASP--- 655
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
LHL +A+TA+ D G DG++ KP
Sbjct: 656 ------LHL--VALTANTGREDVDAASAAGFDGFLPKPL 686
>gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
Length = 1522
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 185/648 (28%), Positives = 289/648 (44%), Gaps = 146/648 (22%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AKS FLA +SHE+RTPMN ILGML LL T L Q DYA ++ + L+ L+
Sbjct: 764 AEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAVKSEAATRTLLRLL 823
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ K+ELE + F++ +L D+ + S + K +E+ + +P+FV GD
Sbjct: 824 NDILDFSKIESGKMELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSLPQFVEGD 883
Query: 495 PGRFRQIITNLVGNSVKFTERGHI--FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
R +QI+TNL GN++KFTE G + F+KV + D+ TL G + G+ +
Sbjct: 884 SMRLQQILTNLGGNALKFTELGEVVLFIKV-------ITQDSHHVTLHFGVRDTGIGIAP 936
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
Q + SG A+ + +F GG TG
Sbjct: 937 ENQESIFSGFTQAEASTT-RRF----------------------GG------------TG 961
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+G+ +S + F+ M GGT ++ S+P GS F
Sbjct: 962 LGLVISQR---FVALM----------GGT-----------------LTLESQPGQGSLFH 991
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDL---PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
FT Y I + L L+ +VVD+ P + Q
Sbjct: 992 FTLTL-SLPSYTNLVINNETPDTLVSRAQALNNLRVLVVDDNPTACDLIQ---------- 1040
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG----- 784
+M S+K A TS D Q ++ + + I+ + A +DW+ G
Sbjct: 1041 RMGESLKWVVDVA----TSGNDALQ--LMRQQHESGIT-----YGALFIDWQMPGLDGWQ 1089
Query: 785 ---------HVFKLPKLILLATN-----ISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
V P ++++ + + + E D+A G+ ++KP+ ASM+ +
Sbjct: 1090 TSKCVRELMPVDNGPMIVMITAHDREMLLQRSEEDQALLDGY----LVKPITASMLLDSV 1145
Query: 831 QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
LS + + V S H+ L G ++L+V+DN N+ +A L+ GA V A
Sbjct: 1146 IDALSERKQPDVAKPVI-AESLHR--LSGIRLLIVEDNLNNQQIARELLEDEGAEVSIAN 1202
Query: 891 SAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
K A++ L+ P FD MD+QMP MDG+ AT+ IR+ N
Sbjct: 1203 HGKEAIEILEHHPSSFDLVLMDLQMPIMDGYNATKYIRKSLGLKN--------------- 1247
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
LPI+AMTA+ + + D CL GM+ ++ KPF+ NL + K+
Sbjct: 1248 -----LPIIAMTANAMSSDRDACLAAGMNDHIGKPFDLNNLIHIIRKY 1290
>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361336|ref|ZP_12961991.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687366|gb|EHI51948.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 890
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 182/641 (28%), Positives = 282/641 (43%), Gaps = 140/641 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE+A AKS FLA +SHEIRTPMN ILGM L L T L Q DY Q + L+ +I
Sbjct: 153 AESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTRLDPQQADYVGKIQRSAQHLLGII 212
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL+LE + F+L +L+++ +L EK+ KGIEL V ++ + GD
Sbjct: 213 NDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 272
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE-GVCRSGT 553
P R QI+ N N+VKFTE+G I VKV E+ E LL+ ++ G+ S
Sbjct: 273 PLRLGQILINYANNAVKFTEQGEILVKVTCLEKL------PKEVLLHCSVQDTGIGMSQE 326
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
Q + AD + K+ GG TG+
Sbjct: 327 QQQRLFQSFQQADSSTT-RKY----------------------GG------------TGL 351
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +S + M GG ++ S P GSTF F
Sbjct: 352 GLAISRELAALM-------------GG-----------------EVGVQSEPGKGSTFWF 381
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
TA G+ + +S LP +G + +V D+ + L +++
Sbjct: 382 TARLGRGR---------YRSRYLPSLDLRGRRMLVADDSASARTI-------LAALLRSM 425
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG--HVFKLP 790
S + D + + + L Q E + + LLDW G +
Sbjct: 426 SFVVDTAESGQQALQMIASAEQ--------------EGNAYEVVLLDWHMPGLDGIETGR 471
Query: 791 KLI----------LLATNISKDEC-DKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+LI ++ T ++E +A++ GF D V++KP+ AS++ ++
Sbjct: 472 RLIARGLGKRLYRVMVTGYGREEVFREAQSAGF-DRVLVKPVCASVL---FDTIIGLFGH 527
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+ + H G +IL+ +DN +N+ VA L+ GA V A + AL ++
Sbjct: 528 QTTAITLKPPQPTHSYRFDGLRILLAEDNELNQQVAMELLRAVGADVSIAGNGAIAL-QM 586
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ +D MD+QMP MDG ATR++RQ ES ++ +PILA
Sbjct: 587 AAQQPYDLILMDMQMPVMDGLAATRQLRQQESDGHQ-------------------IPILA 627
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
MTA+V+ + CL GMD +++KP + + LY L ++ +
Sbjct: 628 MTANVMAGDRERCLAAGMDDHIAKPIDPDKLYAALQRWVPA 668
>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 724
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 182/615 (29%), Positives = 281/615 (45%), Gaps = 113/615 (18%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
+S+FLA +SHEIRTPMNG++GM LL T+L QR+Y T + G+AL+ LIN +LD +
Sbjct: 198 RSEFLANMSHEIRTPMNGVVGMAELLGHTELGEEQREYVDTIRNSGEALLGLINNILDLS 257
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA K+ L+A+ F+ R++L+D + L K+ K IEL F +VP ++GDP R RQ+
Sbjct: 258 KLEAGKMILDAIEFDPRSVLEDTVDLLGAKADEKLIELTGFAESQVPSKLIGDPSRLRQV 317
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+ NLVGN++KFT G + ++V TL+N + E V R F+
Sbjct: 318 LLNLVGNALKFTANGTVRLRV---------------TLMNTSSSEAVLR-----FSVRDT 357
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
D FK AEG + GG TG+G
Sbjct: 358 GVGIDEEQQKRLFKPFSQAEG--------AVARKYGG------------TGLG------- 390
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
LSIS+ + M GQI S GS FSF F K
Sbjct: 391 -----------------------LSISQQIARAMGGQILLESERDKGSEFSFALRF-KLP 426
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
E E++ ++ E+ ++A+V+ A + QY + L + + +++ DA
Sbjct: 427 EKD-EEVSEAPKEE-------IRALVLVNHT--AELVQY--DELFASLDVKATVVDAQER 474
Query: 742 AKNGLTSSEDKFQPDIILVEKDCW-ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS 800
A + +E + P + D + I G S + +L ++P G LP L I
Sbjct: 475 ADEAIAEAERRDAPYHFCLYDDGYRIGGYKSKASNRLGSFEPKG----LP----LIHAIP 526
Query: 801 KDECDKAKAGGFADTV-IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRG 859
+ G ++ + + KP+R S + + Q + + A N L
Sbjct: 527 MSQRSSFPNGKHSERIQLRKPIRRSELERAILQAVDPQAALTAQIRARNERVSLPELDPS 586
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++L+VDD+ +N+ +A L++ G + A + ALD + + +D FMD QMPEMDG
Sbjct: 587 LRLLIVDDHPLNQGIARMILRRLGFQADIAVNGVEALD-MTANRNYDLVFMDCQMPEMDG 645
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
FEATR IR+ E NG + I+AMTA + +CL GMD
Sbjct: 646 FEATREIRKREK-------NGTRTT------------IVAMTASALEEDRQKCLDIGMDD 686
Query: 980 YVSKPFEEENLYREL 994
Y++KP + + + + L
Sbjct: 687 YLTKPVKPQEIAQAL 701
>gi|337265910|ref|YP_004609965.1| integral membrane sensor hybrid histidine kinase [Mesorhizobium
opportunistum WSM2075]
gi|336026220|gb|AEH85871.1| integral membrane sensor hybrid histidine kinase [Mesorhizobium
opportunistum WSM2075]
Length = 779
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 188/674 (27%), Positives = 300/674 (44%), Gaps = 160/674 (23%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
F + E +AEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L++ Q+ +
Sbjct: 217 FAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTARQKTFTDVIV 276
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
G AL+ +IN++LD +KI A +L L+ F L ++DV +L S + K +EL V V
Sbjct: 277 KSGNALLTIINDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSARVAEKNLELIVRVD 336
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
++P +V+GD GRFRQI+TNLVGN+VKFTE+GH+ + V G T
Sbjct: 337 PRLPTYVVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDV------------------GGET 378
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
GV + +T G+ A +N ++KF +D + +
Sbjct: 379 VNGVVQLKLRVEDTGIGIPAEKLQNVFEKFAQ-VDGSSTRRH------------------ 419
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
E TG+G+ ++A+ LV+LM G+I S
Sbjct: 420 ----EGTGLGLAIAAR------------------------------LVDLMAGKIGVESE 445
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
GS F F Q++ E +P G + +V+D+ PV NR
Sbjct: 446 IGRGSVFWFAVPLPL-------HTAQARDEIVPVDVTGARVLVIDDNPV---------NR 489
Query: 725 LGIMVKMSSSIKD--ASSTAKNGLTSSEDKFQ----PDIILVEKDCWISGEDSGFNAQLL 778
++ ++ S D A+ + GL + +Q D I++ D + G + A+ +
Sbjct: 490 EILLEQLRSWSFDCAAAESGAVGLAFLDRAYQLGAAVDCIIL--DYQMPGMNGADVARAI 547
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKA---GGFADTVIMKPLRASM----IAACLQ 831
+ + +P +IL S D+ D K G A + KP R+++ + + +Q
Sbjct: 548 --AADSRLSAIPIVIL----TSVDQVDFGKMIIDFGIAAH-LTKPARSAVLLGTVISVIQ 600
Query: 832 QVLSTENKRQAGR-------------------------GVPNGSSFHQGLLRGKKILVVD 866
+ S K Q R P ++ G + IL+ +
Sbjct: 601 KARSQVGKAQFTREPVQPQPQPAPLPFTVIRGPALPVVPAPESTATPNGPI---DILIAE 657
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQS--PHCFDACFMDIQMPEMDGFEATR 924
DN VN++V L G + A + + A++ +S P MD+ MPEM+G+EATR
Sbjct: 658 DNDVNQLVFGQILNGLGLSYRIAGNGRTAVEMYRSLRPRLI---LMDVSMPEMNGYEATR 714
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
IR +E+ +GG H+PI+ +TA + D+C++ GMD Y+ KP
Sbjct: 715 AIRAIETS------SGG------------HIPIIGVTAHALKGDRDKCIEAGMDDYLPKP 756
Query: 985 FEEENLYRELAKFF 998
+ L ++ +
Sbjct: 757 VSPDRLGAKIGTWL 770
>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
Length = 1267
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 179/641 (27%), Positives = 300/641 (46%), Gaps = 120/641 (18%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ E K AE + KS+FLA +SHEIRTPMNGI+G LL+ T L+S Q +Y +
Sbjct: 497 LTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQLNSKQLNYLTKIRSQS 556
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+ L+ +IN++LD +K+EA K+ +E V FNL ++ D+ L ++ KG+EL V V
Sbjct: 557 QHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQASQKGLELLANVQKGV 616
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL-------AERTMVKTDAKDETLL 540
P + GDP R +Q++ NL N++KF+++G+IF++V +++ ++ +D +
Sbjct: 617 PAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLRVEKIDQSDSDSDQVIISFSVEDNGI- 675
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
G TEE + R FN+ S +++ R GG
Sbjct: 676 -GLTEEQMQR----LFNSFSQADSSTTRKY--------------------------GG-- 702
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
TG+G+ +S + + M + S S YG
Sbjct: 703 ----------TGLGLAIS---KYLVELMGGEISVSSEYG--------------------- 728
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
VGSTFSF+ FG + I+ ++ +++ KG + ++VD+ +
Sbjct: 729 ------VGSTFSFSLPFG----ILASGIQTNQRDNID--LKGSRVLIVDDNEASQEILAS 776
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
+L L V + SS ++A L + F DI+++ D + G D +L+
Sbjct: 777 YLVDLNFDVTVLSSGQEAIDL----LVKEGEAF--DILVI--DWKMPGLDGVETIRLI-- 826
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
K + K+P +I++A+ DE + + KP S + + +
Sbjct: 827 KEKMKLEKIP-IIIMASAYDLDELRNVFSELGIKAFLNKPHTPSQLMDAITMAYVESDSY 885
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ + S F G L G IL+V+DN +N+MVA L+ G +V+ A + + A++K++
Sbjct: 886 YRPQDLKENSLF-TGKLEGNHILLVEDNLINQMVAVEILESVGISVDVAENGREAVEKVR 944
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ + +D MD+QMP MDG EATR +R D RD LPI+A+
Sbjct: 945 AGN-YDLVLMDLQMPVMDGMEATRILR-----------------DEPLYRD---LPIIAL 983
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
TA I ++C+ GM+ ++SKPF E++ L+K S+
Sbjct: 984 TAHAISGFREQCIGLGMNDFISKPFLPEDMLLILSKCLTSR 1024
>gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
Length = 718
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 182/630 (28%), Positives = 276/630 (43%), Gaps = 127/630 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+++++ + +AE A+ AKS FLA +SHEIRTPMNGI+GM LL +T L QR + T +
Sbjct: 200 NQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADLLSETGLGEEQRLFVDTIRN 259
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G+AL+ +IN+VLD +KIEA +LEL F+ + +V+ L +R+K I L V
Sbjct: 260 SGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHEVMRLLQPPARDKDIALLVDYDL 319
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P V+GDPGR RQI+TN++GN+VKFT GH+ + V G E
Sbjct: 320 FLPTQVVGDPGRIRQILTNIIGNAVKFTPSGHVLISV------------------TGTHE 361
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
+GVC D+ +
Sbjct: 362 DGVC---------------------------------------------------DLRVT 370
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ GI P + +F F Q D SR + GTG+GLSI+K LVELM GQI S
Sbjct: 371 IQDTGIGIPAP--KIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVELMGGQIWVTSEN 428
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL-PPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
G+ F F D + S+ D+ P K A++VD + + + L
Sbjct: 429 GEGTCFGFQVKL---------DSRPSEGLDMVKPALKN--ALIVDSSELTRTILEKQLAL 477
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
LG+ A +NG + I+ + C I G D +L +P+
Sbjct: 478 LGLACTSVDHESKAVDALQNGCDFA--------IIDDVQCTIDGFD--LAQKLRAAQPD- 526
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST---ENKRQ 841
LP ++L+A N E D + V+ KP+ ++ L ++ T E ++
Sbjct: 527 ----LP-ILLIAANAGIAEKDPVRHT--VSHVLQKPVPRQVLYRILMEMNPTKTVEPPKE 579
Query: 842 A----GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
A R + R ++L +DN N++V LK+ + A++ A+
Sbjct: 580 AVVFHARQRRETPALTTDTRRRLRVLAAEDNKTNQLVFGKMLKELDVELLFASNGIEAV- 638
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L D FMDI MP+ DG AT+ IR E GT +PI
Sbjct: 639 SLYDSFTPDIVFMDISMPKKDGKAATQEIRDKEKTT------------GT------RIPI 680
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEE 987
+AMTA + + L G+D +++KP ++
Sbjct: 681 VAMTAHAMSGDQEAILDAGLDRFLTKPLKK 710
>gi|409203835|ref|ZP_11232038.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas flavipulchra
JG1]
Length = 1243
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 182/635 (28%), Positives = 278/635 (43%), Gaps = 125/635 (19%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K A+ + AKS+FLA +SHEIRTPMN I+GM L L T+L++ Q DY K
Sbjct: 490 EAKNLAQNSAKAKSEFLANMSHEIRTPMNAIIGMSHLALATELNAKQHDYVSKIDTAAKQ 549
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ LIN++LD +KIEA K+ELE F+ +LD+V ++ S K++ K +EL + +VP
Sbjct: 550 LLRLINDILDFSKIEAGKIELEYQAFSTEKLLDNVATIVSVKAQEKQLELVFDIDSQVPY 609
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GD R Q++ NL GN+VKFTE G + ++V L E+G+
Sbjct: 610 CVIGDQFRISQVLINLAGNAVKFTETGEVVIRVALV-----------------NVEKGLA 652
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
+ ++ G+ +N + F Q++ SI GG
Sbjct: 653 KIKFSVKDSGIGMNKRQQKNLFQSFS--------QADNSITRKY---GG----------- 690
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
TG+G+ +S Q LV+LM G+I S VGS
Sbjct: 691 -TGLGLTISQQ------------------------------LVKLMGGEIYVESEENVGS 719
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F FT + V +++ Q+K L A ++D+ V L G+ V
Sbjct: 720 EFYFT-----LEMEVSDELSQAKMAS--THLSELSATIIDDNQHALDVLSGMLTNFGMQV 772
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S D + + E PD+I V+ W + G L K V
Sbjct: 773 ---CSYLDPHKALNQFVLTQE---LPDLIFVD---WHMPKLDGIE---LITKLQSQVDVS 820
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ-------QVLSTENKRQA 842
+L T ++ D V++KP+ S + +Q +V +T K++
Sbjct: 821 QSKFILVTAYGRELNLNDSQASLVDGVLLKPINPSNLVDVIQNAVFDSPEVRTTITKKE- 879
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
+ + L G ILV +D VN+ +AA L FGA V A + + A+D++ S
Sbjct: 880 -------QTISKQALNGISILVAEDQPVNQEIAAEILSSFGAQVAVADNGQEAIDQVHSK 932
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H D MD+QMP MDG AT+ +R + D+ LPILAMTA
Sbjct: 933 H-IDIVLMDMQMPVMDGITATQNLR--------------------IEFDKNTLPILAMTA 971
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ + C+ GM+ +V+KP + E L + + K+
Sbjct: 972 NAMEEDIQTCIDAGMNDHVTKPIDVEQLVKSILKY 1006
>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
Length = 1324
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 185/645 (28%), Positives = 295/645 (45%), Gaps = 140/645 (21%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++ K A+A AK FLA +SHEIRTPMN ILGM L L+T L +TQR Y
Sbjct: 592 ELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
K L+ +IN++LD +K+EA KL +E + FNL +LD+++S+ S K++ KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQEKGIEFLMDIDPH 711
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV---HLAERTMVKTDAKDETLLNGG 543
+P ++GDP R Q++ NL GN+VKFT +G I + L E+ + A +T + G
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTHQGEIVISARVRQLNEQQVTLFFAVKDTGI-GI 770
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
T+E + G FN S Q++ SI GG
Sbjct: 771 TQEKLA----GLFNAFS-----------------------QADNSITRQY---GG----- 795
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
TG+G+ +S Q LVELM G+IS S
Sbjct: 796 -------TGLGLSISKQ------------------------------LVELMGGEISAHS 818
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL---KAVVVDEKPVRAAVTQY 720
GSTF F+ V G +++++ D+ GL + +VVD+
Sbjct: 819 EEGKGSTFEFSVVCG---------LQEARMRDIAQPLHGLADKRVLVVDDND-------- 861
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTS-SEDKFQP-DIILVEKDCWISGEDSGFNAQLL 778
+ I+ + ++++ T NG + SE + +P D++ V+ + G N L
Sbjct: 862 --SARNILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNM------PGMNGIEL 913
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
+ + L T +D ++ D++I+KP+ S + + ++
Sbjct: 914 LTRVKSLGLREQTKCFLVTAYGRDIHLDSENSKLVDSLIVKPVNPSNLLDAIVTSYGIDH 973
Query: 839 KRQAGRGV-----PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
R V PN G+ +L+V+DN VN+ VA G L++ G +V A + +
Sbjct: 974 VRHKQTEVHQHRKPN--------FAGQTLLLVEDNEVNQEVALGLLQETGLSVIVANNGQ 1025
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
AL +L + FD MD+QMP MDG AT++IR A+E+
Sbjct: 1026 EALQRL-AEKSFDLVLMDMQMPVMDGITATKKIR-----ADERWKT-------------- 1065
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+AMTA+ + + C + GM+ ++SKP + + Y L +F
Sbjct: 1066 -LPIVAMTANAMATDIEHCTQAGMNDHLSKPIDVDKFYHVLKQFL 1109
>gi|427421170|ref|ZP_18911353.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425757047|gb|EKU97901.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 911
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 197/693 (28%), Positives = 301/693 (43%), Gaps = 113/693 (16%)
Query: 320 ICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQE--------- 370
I +H++ TP AL F G L I I +V ++M +
Sbjct: 195 IVLFHRQVHTPLRALNKFARSFEEGHLEQRIQIKYPDEIGQVSRALNQMADQLQGNLVGL 254
Query: 371 --LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
+ A AA +KS FLA +SHEIRTPMNGILGM LLLDT+L+ QR++++T C
Sbjct: 255 AIARDEALAAAQSKSDFLANMSHEIRTPMNGILGMSGLLLDTNLTQEQRNFSETIWNCCN 314
Query: 429 ALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVP 488
+LI +IN++LD +KIE+ KL++E F LR +++ L L + K+ K +ELA +P
Sbjct: 315 SLITIINDILDFSKIESGKLDMEECPFELRTCIEESLDLLATKAAEKNLELAYLAEPGIP 374
Query: 489 EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
+ ++GD R RQI+ NLVGN++KFT G I VKVH T+V +T ++ E+
Sbjct: 375 DRLVGDVTRLRQILVNLVGNAIKFTHEGEILVKVHTKPFTVVS-----QTHIDQDIEKDY 429
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608
+T G+ DK L F+S + + + A G
Sbjct: 430 VTIHFDVQDTGIGIPT-------DKMNRL-----FKSFSQVDSSTARKYGG--------- 468
Query: 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVG 668
TG+G+ +S Q L ELM G +S S G
Sbjct: 469 --TGLGLAISKQ------------------------------LCELMGGNMSVTSVVGEG 496
Query: 669 STFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIM 728
S FSF+ V DI+ + +G + ++VD+ +
Sbjct: 497 SCFSFSIVVEVLPSLEL-DIESEAHQ-----LRGKRVLIVDDNATNRKMLALQTQSW--- 547
Query: 729 VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
M S++ ++ A L+ +D F I+ D + D A + KP G
Sbjct: 548 -DMQSTVAQSAYEALGILSCHQDSFDVAIL----DMQMPEVDGLTLANEIRTKPYGKTLP 602
Query: 789 LPKLILLATNISKDE--CDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
L ++ T++ K E + K F + KP++ S + L QV + + V
Sbjct: 603 L----VMLTSVGKPELAANALKKANF-QAFLNKPIKQSRLYNVLNQVFVDQPVKIQTPEV 657
Query: 847 PNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
N + + L K +ILV +DN VN+ + L K G + + A+D L+
Sbjct: 658 TNEADLYDSTLAQKHPLRILVAEDNLVNQQLIRQWLGKMGYRPDLVGNGYEAIDALKR-Q 716
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
+D MD+ MPEMDG AT I + SVD KR I+A+TA+
Sbjct: 717 TYDVVLMDVHMPEMDGLTATAEICKQ------------WSVD---KRPY----IIALTAN 757
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ + CL GM+ Y+SKP +L + L +
Sbjct: 758 AMKGDRERCLNAGMNNYISKPIHVPDLVKALKQ 790
>gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36]
gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36]
Length = 768
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 172/635 (27%), Positives = 290/635 (45%), Gaps = 117/635 (18%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
+ +++ K +AE A++ KS+FLA +SHEIRTPMNG++G +LL + + Q+++
Sbjct: 227 YRELETAKRQAEDANLKKSEFLANMSHEIRTPMNGVIGTASLLQEMPMGREQKEFVDMLY 286
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
L+ LIN++LD +KIE+ +L L NL + ++ S FS +R K I L +
Sbjct: 287 SSSITLLDLINDILDFSKIESGQLILAKNPLNLFELCKEIESNFSIIARQKQIALVCHID 346
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
D +P+ VLGD + RQ++ NL+ N++KFT G + + + L +R KD N G
Sbjct: 347 DNIPDMVLGDITQLRQVLNNLLSNAIKFTSIGCVRLNIKLMDR-------KDN---NAGI 396
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
+ SG G+ A + + ++KF+ A+G
Sbjct: 397 MFQIIDSGI-------GIAAENQQKIFEKFQQ---ADG---------------------- 424
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
ST+R+YGGTG+GL+I + +V+LM I S+
Sbjct: 425 ----------------------------STTRNYGGTGLGLAICRSIVKLMDSDILVYSK 456
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
P GS F F F E + E +++ SE GL +++D+ + +T L
Sbjct: 457 PGKGSRFEFAVQF----ESIDELLQRPDSEQ---SLAGLSILLIDDSMLNMRITSAQLKS 509
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNA--QLLDWK 781
G +S D +K+ + + DK +P D+++++K + GF QL D
Sbjct: 510 FG----ATSVCCDDPCLSKSVVLDALDKGKPFDLVIIDK---VMPTMDGFTVAKQLQD-- 560
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
P+L+L++ + A+ G + +P +A ++ + Q L +Q
Sbjct: 561 --EFAELTPRLMLMSAEAQVGDDVLARKLG-VRAFLSRPYKADILKKVVLQTLMNAQPKQ 617
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
V + + ++L+V+D +N+ V L+K G V A + + A+D L
Sbjct: 618 METVVEETVAADE-----MQVLLVEDTLINQKVTKMMLQKLGIVVTIADNGQIAVD-LCK 671
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
F+ MD QMP +DGF+AT+ IR E+ H PI+A+T
Sbjct: 672 EQGFNLILMDCQMPVLDGFDATKIIRDSETAGQ-------------------HTPIIALT 712
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
A+V+ D+C GMD +++KP ++ L L K
Sbjct: 713 ANVLQIEKDKCFAAGMDDFIAKPVSKQVLTLMLQK 747
>gi|428304414|ref|YP_007141239.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428245949|gb|AFZ11729.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1100
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 177/631 (28%), Positives = 291/631 (46%), Gaps = 104/631 (16%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K+ AE+A AKS+FLA +SHEIRTP+N ++GM LLLDT L Q+++ +T + G
Sbjct: 435 LEQAKIAAESATRAKSEFLANMSHEIRTPLNAVIGMTTLLLDTHLDPQQQNFTETIRSSG 494
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+AL+ L+N++LD +KIE+ KL+L+ FNLRA +++ L L + K+ K +ELA +
Sbjct: 495 EALLTLVNDILDFSKIESGKLDLDQYPFNLRACIEESLDLIASKAGEKKLELAYLIYPPT 554
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P+ ++GD R RQI+ N++ N+VKFT G + V V + + K D +
Sbjct: 555 PKTIVGDHNRLRQILVNILSNAVKFTPAGEVVVTV--TTKILSKLSEVDNFPQKYEIQFA 612
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ +G G N D+ + L FQS + + + + G
Sbjct: 613 IKDTGIGIPN--------------DRIEKL-----FQSFSQVDSSTTRHYGG-------- 645
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
TG+G+ +S Q LVELM GQI S
Sbjct: 646 ---TGLGLAISKQ------------------------------LVELMDGQIWVESEVDR 672
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF+FT + ++ DI +K ++ P G + ++VD V + I
Sbjct: 673 GSTFNFTLIVESTQDQA--DIHNTK--EIHP-LSGKRILIVDNNITNQQVLILQMQCWKI 727
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
+ + ++S+++A S L +E Q D+ ++++ + D + P+
Sbjct: 728 ITRAATSVQEALS-----LLQAE---QFDLAILDRQ--MPEMDGVMLTSAIRQLPSCQNL 777
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
L L L + ++ +A GF + KP++ S + L + + ++ + P
Sbjct: 778 PLVMLNSLGNDQITEQNSEADFAGFLN----KPVKQSQLYNLLVAIFTGQSIKLTSYH-P 832
Query: 848 NGSSF--HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
N + F H +ILV +D VN+ + L++ G + A + L+ L +
Sbjct: 833 NQAKFDPHLATRIPLRILVAEDFVVNQKMILLMLERMGYRADIANNGFEVLEALHR-QPY 891
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MD+QMPEMDG EATR IRQ + + I+A+TA+ +
Sbjct: 892 DLVLMDVQMPEMDGLEATRSIRQNTTSCPQPR-------------------IIAITANAM 932
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ CL+ GMD Y+SKP E L L K
Sbjct: 933 QGDKEACLEAGMDDYLSKPVRVEELVAALNK 963
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 21/147 (14%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK+IL+VD+N N+ V ++ + A S + AL LQ+ FD +D QMPE
Sbjct: 700 LSGKRILIVDNNITNQQVLILQMQCWKIITRAATSVQEALSLLQAEQ-FDLAILDRQMPE 758
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG T IRQ+ S N LP++ + + ++ +
Sbjct: 759 MDGVMLTSAIRQLPSCQN--------------------LPLVMLNSLGNDQITEQNSEAD 798
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKPL 1003
G+++KP ++ LY L F + +
Sbjct: 799 FAGFLNKPVKQSQLYNLLVAIFTGQSI 825
>gi|218709306|ref|YP_002416927.1| two-component regulatory system multi-sensor hybrid histidine kinase
[Vibrio splendidus LGP32]
gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
histidine kinase [Vibrio splendidus LGP32]
Length = 1223
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 194/674 (28%), Positives = 314/674 (46%), Gaps = 116/674 (17%)
Query: 338 FFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPM 397
FVI LL+G + A +E H + + A+AA+ AKS FLA +SHEIRTPM
Sbjct: 439 LIFFVIILLMGLLANKAH---SALETFTHSLAAARDEADAANHAKSDFLANMSHEIRTPM 495
Query: 398 NGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457
N I+GM L L TDL+ QR+Y ++ L+ LIN++LD +KIEA KL++E V F L
Sbjct: 496 NAIIGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQL 555
Query: 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH 517
+LD++ +L ++ ++G+EL + V VP ++GDP R QI+ NL N+VKFTE+G
Sbjct: 556 ENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPLRLGQILINLSNNAVKFTEKGE 615
Query: 518 IFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHL 577
+ + + +AER D+ LN V SG G++ + KF
Sbjct: 616 VKISISVAER------QGDDIKLNF----AVSDSGI-------GMKQEQASKLFTKFT-- 656
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
Q+++S GG TG+G+ +S + M
Sbjct: 657 ------QADSSTTRKY---GG------------TGLGLAISKELSQLM------------ 683
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
G I +S EL +G STFSFT V I+Q + +P
Sbjct: 684 --GGDIHVS-----TELGKG-----------STFSFT-----IATRVSHSIQQHRVV-VP 719
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
LK +VVD+ + L L + +SSS+ +A L +++ + +P D
Sbjct: 720 ASINNLKVLVVDDNSSARLIVGDILESLKLTPILSSSVDEALIE----LHTADAQNKPFD 775
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGF-ADT 815
+++ + W + G + LL NG +PK+++L ++ + + GF +
Sbjct: 776 LVISD---WKMPKRDGVD--LLAELKNGQQLTMPKIMMLTAYDREELAELIEQRGFEVPS 830
Query: 816 VIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF-HQGLLRGKKILVVDDNGVNRMV 874
++ KP+ +S + + + ++ R + + + + L G IL+V+DN +N+ +
Sbjct: 831 ILDKPITSSHLYDSIVSLYGLDSDRVSRSELEQQNQLANVQQLAGANILLVEDNEINQEL 890
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHC----FDACFMDIQMPEMDGFEATRRIRQME 930
A L+ V A + + A+D Q FD MD QMP MDG+EAT IRQ
Sbjct: 891 ATELLEGQQIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYEATEYIRQ-- 948
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+ N+Q +PI+AMTA+V+ ++ L CGM ++KP + ++
Sbjct: 949 -QINDQ-----------------DIPIIAMTANVMERDKEKALSCGMSDIIAKPIDVGSM 990
Query: 991 YRELAKFFK-SKPL 1003
+ LA + S P+
Sbjct: 991 FATLANWVSPSNPV 1004
>gi|334120111|ref|ZP_08494194.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457293|gb|EGK85918.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1521
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 202/726 (27%), Positives = 313/726 (43%), Gaps = 180/726 (24%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+A AA AKS+FLAT+SHEIRTPMNG++GM LLLDT L+ QRD+ +T + G AL+ L
Sbjct: 679 QALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQRDFVETIRSSGDALLTL 738
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIE+ KL+LE F++R +++ L L + K+ K +E+ +
Sbjct: 739 INDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKKLEVGYLID--------- 789
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
R + +G+S + + + ++L + T+A + V + T
Sbjct: 790 -----RAVPATAIGDSTRLRQ-----ILINLLSNAVKFTEAGE-----------VVVAVT 828
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+ ++S A K I+ E N + + V+DTGI
Sbjct: 829 AKKISVSAANA--------KEPPAINGEPVVINPA-------------YEIHFAVKDTGI 867
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI------SFVSRP-- 665
GIP +R+F F Q DSSTSR YGGTG+GL+ISK L E+M G++ S P
Sbjct: 868 GIPSDRMDRLFKSFSQVDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVESMGSVAGNPPA 927
Query: 666 --------------------------------------QVGSTFSFTAVFGKCKEYVFED 687
VGSTF F+ + C +
Sbjct: 928 DFRSAVFDLGWGESCEIAEKYGYGKSVLSNKPIGQNTKSVGSTFYFSTIVSACNSCLPVS 987
Query: 688 IKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLT 747
+ S+ P G + ++VD+ + G++ + S+S + A + L
Sbjct: 988 LSNSQ-----PELAGKRVLIVDDNATNRRILTLQAQSWGMVARASAS----AHLALDWLA 1038
Query: 748 SSE--DKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECD 805
+ E D D+ + E D AQ+ + P+ KLP ++L T+I + E +
Sbjct: 1039 AKEMFDLAVLDMQMPEMDGL------ALAAQIRRY-PDCE--KLPLVML--TSIGRQEIN 1087
Query: 806 K-AKAGGFADTVIMKPLRASMIAACL-----QQVLSTENKRQAGRGVPNGSSFHQGLLRG 859
A FA + KP++ S + L +Q + +R +G + + + L
Sbjct: 1088 SPAMEMDFA-AFLNKPIKQSQLYNVLINIFGEQTTEFKGQRTSGPFLQSIPVLAEDL--P 1144
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+IL+ DD+ VN+ VA L++ G + A + L+ L+ +D MD+QMPEMDG
Sbjct: 1145 LRILLADDHLVNQKVALQILQRMGYRADVAGNGIEVLEALRR-QPYDVVLMDVQMPEMDG 1203
Query: 920 FEATRRIRQMESK---------------ANEQMMN--------GGSSVDGT-----AKRD 951
E TRRIR+ S NE N GGS V T ++
Sbjct: 1204 LETTRRIREQFSADLTLENHTGESEISVTNEPSNNLDSTKNPTGGSKVSATDEQSNNRKS 1263
Query: 952 ELHLP-----------------------ILAMTADVIHATFDECLKCGMDGYVSKPFEEE 988
+ P I+AMTA+ + +EC+ GMD Y+SKP E
Sbjct: 1264 RIQNPKLTEEESNNRKSKIENRKSTRPWIVAMTANAMQGDREECMAAGMDDYLSKPIAIE 1323
Query: 989 NLYREL 994
L R L
Sbjct: 1324 QLVRAL 1329
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+P S Q L GK++L+VDDN NR + + +G +ASA ALD L + F
Sbjct: 984 LPVSLSNSQPELAGKRVLIVDDNATNRRILTLQAQSWGMVARASASAHLALDWLAAKEMF 1043
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D +D+QMPEMDG +IR+ D LP++ +T+
Sbjct: 1044 DLAVLDMQMPEMDGLALAAQIRRYP--------------------DCEKLPLVMLTSIGR 1083
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
++ +++KP ++ LY L F
Sbjct: 1084 QEINSPAMEMDFAAFLNKPIKQSQLYNVLINIF 1116
>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 676
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 202/710 (28%), Positives = 325/710 (45%), Gaps = 151/710 (21%)
Query: 286 DPLIMYGDQNQDGDMSLLHESELDFG-DSFRKHKMICRYHQKASTPWTALTTAFFLFVIG 344
+P+ + G ++ D+ +L + ++ G D R+ + R + +F FV
Sbjct: 85 EPIALIGSRD---DLEILDRNAVEIGPDGVRRLEAQVRTADGRAR--------WFAFV-- 131
Query: 345 LLVGYILYGAAIHIVKVEDDF-HKMQELKVR------AEAADVAKSQFLATVSHEIRTPM 397
+ +G A H ++ D +++ ++ R AEAA VAKS+FLATVSHE+RTP+
Sbjct: 132 --EMPVAHGDATHWLRAGRDVTARVEAIRSRDAALERAEAASVAKSRFLATVSHEMRTPL 189
Query: 398 NGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457
NGILGM L+L T+L+ QR Y + + G+AL+ LI+ VLD ++IEA +L+L A F+L
Sbjct: 190 NGILGMADLVLGTELNPEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDL 249
Query: 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH 517
A+ + V+ L + ++++KGIE+A+ V++ P VLGD R RQI+ NL GN+
Sbjct: 250 PALSEGVVELLAPRAQDKGIEIALDVAEDFPAAVLGDADRVRQILINLAGNA-------- 301
Query: 518 IFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHL 577
+ ER V G G R+GTG
Sbjct: 302 ----IKFTERGGV------------GVSLGFARAGTGG---------------------- 323
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+++ V DTG GIP +F F Q D S SR
Sbjct: 324 -------------------------EVVLAVADTGPGIPEERLPILFEEFEQGDGSASRS 358
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
+ GTG+GL+I++ LV M G+I SR GSTF + E + ++ L
Sbjct: 359 HEGTGLGLAITRRLVTRMGGRIEADSRLGRGSTFRVLLPLAEVAGA--EGVGRAPLPTLA 416
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDI 757
P + ++V + P +A L+R G ++ I D+ + + L+ + F D
Sbjct: 417 P----RRCLIVADSPFQAPYLARSLSRAG----AATVIVDSLDSGLDALSGA--AF--DA 464
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVI 817
+L ++ D+ Q+ D V L+LL + + A GF D +
Sbjct: 465 VLADRALG----DTAVR-QIADAARACGVRT--SLVLL-SPFDRRGFGAPGAAGF-DGYL 515
Query: 818 MKPLRASMIAACLQQVLSTENKRQAGRGVPN-----GSSFHQGLLRGKKILVVDDNGVNR 872
+KP+R + +++L++ +A P GSS ++L+ +DN +N
Sbjct: 516 IKPVRPR---SLFERLLASAGPVEAAAAPPAVPPRVGSSL--------RVLLAEDNPINA 564
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
++A AL++ GATV AA AL +L++ FD +D++MP +DG E RRIR ES
Sbjct: 565 LLATRALERLGATVVHAADGLEALARLETDGPFDLALIDVRMPRLDGHETARRIRAAES- 623
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
DG + LHL +A+TA+ G DG+++
Sbjct: 624 ------------DGAQR---LHL--VALTANAGREDEAAARAAGFDGFLA 656
>gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789187|ref|YP_005820310.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 1329
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 178/626 (28%), Positives = 288/626 (46%), Gaps = 112/626 (17%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS+FLA +SHEIRTPMN I+GM L+ +T L Q + + +L+ +I
Sbjct: 578 AEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQETKLDERQLGFIERISHAATSLLGII 637
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N +LD +KIEA K +LE L+ I+ +V +L + + IEL V + ++PE ++GD
Sbjct: 638 NNILDFSKIEANKQDLEITQLVLQDIIGEVAALAEVRIAGRPIELIVDIDPEIPEVLMGD 697
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL--NGGTEEGVCRSG 552
P R QI TNL+ N+ KFTE G I +++ K E ++ N V +G
Sbjct: 698 PLRLSQIFTNLINNATKFTESGSITLQI------------KQEQVIGNNIKLSFSVIDTG 745
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
G + D+ HL +A Q++ SI GG TG
Sbjct: 746 IGM--------------TTDQLHHLFNAFT-QADGSITR---KYGG------------TG 775
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+G L ISK LVELM G++ S GS F
Sbjct: 776 LG------------------------------LVISKSLVELMGGELQVESEYGKGSKFF 805
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
FT + K + F+ ++VD+ +V +++L +L +V+ +
Sbjct: 806 FTITLAMAPQSTVPKWKSVST------FRNKNVLLVDDCERLRSVLRHYLTKLRCVVEEA 859
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
+S+ +A + + E + D+ +V+ + +GF+ + P ++ K+PK+
Sbjct: 860 ASVDEALDLIQAHEEAGETPY--DLFIVDYQMPLM---NGFD--FVQGLP-ANMRKIPKI 911
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
++ + + A GF ++ + KPL+ S + + +Q+ + + Q F
Sbjct: 912 LMHPIHFDEHNYHLATEIGF-NSCVAKPLQISSLLSAMQEAVDEKLTYQKAPKPEKNKIF 970
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
+ KIL+V+DN +N+ +A L G A + K AL+ L+ + FD MDI
Sbjct: 971 ----FKEAKILLVEDNEMNQELAVSLLNSVGLATMVAPNGKKALELLKI-NAFDLVLMDI 1025
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMP M+G +ATR IR ++++E N +PI+AM+A D+C
Sbjct: 1026 QMPVMNGLDATRAIR---NRSDEYFKN---------------VPIIAMSAKAFQKDRDDC 1067
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFF 998
LK GM+ Y++KP + LY ELAK+
Sbjct: 1068 LKAGMNSYIAKPIDPMMLYAELAKYL 1093
>gi|383760143|ref|YP_005439129.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
gi|381380813|dbj|BAL97630.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
Length = 1000
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 176/620 (28%), Positives = 278/620 (44%), Gaps = 122/620 (19%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTP+N ILGM AL L T+L + QRDY + + ++L+ ++N +LD +
Sbjct: 356 KSDFLANMSHEIRTPLNAILGMTALALRTELDTRQRDYLEKTRAAAQSLLGIVNVILDFS 415
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA +LELE F+L A+LD V ++ + ++ ++G+ + + VP
Sbjct: 416 KIEAGRLELEHDAFDLDAVLDGVAAIVALQAHDRGLGFVLDLPASVPR------------ 463
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
LVG++++ ++ V V+L VK + E +++ E G
Sbjct: 464 --GLVGDALRLSQ-----VLVNLCG-NAVKFSERGEVVVSVAAEAG-------------- 501
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
A+GR + L V D GIG+ E
Sbjct: 502 --PAEGR---------------------------------LRLRFGVHDNGIGLSQQDLE 526
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
R+F PF Q D+ST+R YGGTG+GL+IS+ LV+ M G I+ S P GS F F AVFG
Sbjct: 527 RLFRPFSQVDASTTRRYGGTGLGLAISRQLVQAMGGDITVRSTPGHGSDFLFDAVFGLAP 586
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
+ + + GL+ +V D V Q LG +V+ + +A++
Sbjct: 587 QAAAPARRAPR--------PGLRLLVADASARAREVLQARAAELGCLVRSAGDADEAATH 638
Query: 742 AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL-ILLATNIS 800
A G ++ D G A+L H+ P L I +
Sbjct: 639 AAEGADLVLMAAA-----------LAAADPGLPARL-------HMLAGPGLRIAVLVPYG 680
Query: 801 KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK 860
D+ ++ G DT++ P+ A+ + A L+ + + P S GL
Sbjct: 681 ADDAERTLPPGV-DTLLATPVSAASLLALLESLFGRDAPAAGAPLPPPPSRRLDGL---- 735
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++L+ +DN VN+ + L++ GA+ A AL L FDA MD+QMP +DG
Sbjct: 736 RVLLAEDNPVNQELTLELLRQAGASTALAGDGLEALAWLAR-EPFDAVLMDVQMPGLDGL 794
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E TRR+R++ LP++AMTA + + + CL GM+ +
Sbjct: 795 ETTRRLRRLPGLDT--------------------LPVIAMTAHAMASDREACLAAGMNDH 834
Query: 981 VSKPFEEENLYRELAKFFKS 1000
++KPFE + L L + ++
Sbjct: 835 LAKPFEPDALIERLRHWTRA 854
>gi|399036702|ref|ZP_10733666.1| signal transduction histidine kinase [Rhizobium sp. CF122]
gi|398065529|gb|EJL57150.1| signal transduction histidine kinase [Rhizobium sp. CF122]
Length = 946
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 185/651 (28%), Positives = 286/651 (43%), Gaps = 129/651 (19%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ L RAEAAD KS+FLA +SHEIRTPMNG+LGM LL TDL + Q+ +
Sbjct: 394 ELERLLSRAEAADRVKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDTRQKTFIDIIVKS 453
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A ++ L F+L ++DV +L S + K I+L V +
Sbjct: 454 GNALVTIINDILDFSKIDAGQMTLRRTTFDLVDAIEDVATLLSSSAAEKNIDLLVRTAPD 513
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQIITNL+GN+VKFTERGH+ V V A+DE + + E
Sbjct: 514 LPSAVIGDAGRFRQIITNLIGNAVKFTERGHVLVDVGFT------PGAQDEIMASIRVE- 566
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+T G+ + +DKF + D +
Sbjct: 567 ----------DTGIGIPGDKLESIFDKFSQI-----------------------DTSSTR 593
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ ++ TG+ V+L G + S+P
Sbjct: 594 RHEGTGLGLAIT----------------------TGL--------VDLFGGYLEVDSQPG 623
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F + + LP +G + ++VD+ V + L G
Sbjct: 624 EGSVFTVNLPFVVAAARL-------APKPLPVNVRGARVLIVDDNAVNRQILTEQLAVWG 676
Query: 727 IMVKMSSSIKDASSTAKNGLTS-----SEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
+ A +GL + + D+ I V D + G + A+ L +
Sbjct: 677 F----------DGAAAGDGLEAVAILEAADELGIGIDAVVLDYQMPGMNGAEIARKL--R 724
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
+ +LP + L + +IS E D A G A +MKP RA+++ + V+ T +Q
Sbjct: 725 ADCRFERLPIIFLTSMDISGTEKDFAALNGQA--YLMKPARANVLRNTIVDVVRTSRTKQ 782
Query: 842 AGRGV---PNGSSFHQGLLRGKK-----------ILVVDDNGVNRMVAAGALKKFGATVE 887
V PN LL + +LV +DN VN++V L++ G +
Sbjct: 783 IATAVNILPNVQETAPSLLPKVESSERMPAGFIDVLVAEDNEVNQIVFKQILQETGVSFL 842
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
++ + A++ + MD+ MP M+G +ATR IR E G
Sbjct: 843 VVSNGQEAVEAWDR-YTPRIIMMDVSMPVMNGHDATRAIRDRER--------------GQ 887
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
R +PI+ +TA + D CL+ GMD Y+SKP E L +L +
Sbjct: 888 GHR----VPIIGVTAHALDVDRDLCLEAGMDDYMSKPISPELLEEKLGLWL 934
>gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
Length = 1521
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 180/640 (28%), Positives = 288/640 (45%), Gaps = 130/640 (20%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AKS FLA +SHE+RTPMN ILGML LL T L Q DYA ++ + L+ L+
Sbjct: 763 AEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAVKSEAATRTLLHLL 822
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ K+ LE + F++ +L D+ + S + K +E+ + +P+FV GD
Sbjct: 823 NDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPALPQFVEGD 882
Query: 495 PGRFRQIITNLVGNSVKFTERGHI--FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
R +QI+TNL GN++KFTE G + F+KV + D+ TL G + G+ +
Sbjct: 883 SMRLQQILTNLGGNALKFTELGEVVLFIKV-------ITQDSHHVTLHFGVRDTGIGIAP 935
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
Q + SG A+ + +F GG TG
Sbjct: 936 ENQESIFSGFTQAEASTT-RRF----------------------GG------------TG 960
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+G+ +S + F+ M GGT ++ S+P GS F
Sbjct: 961 LGLVISQR---FVALM----------GGT-----------------LALESQPGQGSLFH 990
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPP---GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
FT Y I K + L L+ +VVD+ P + + L V
Sbjct: 991 FTITL-PLPSYTNLVINNEKPDTLAARAHALNNLRVLVVDDNPTACDLIKQMGESLKWTV 1049
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
+++S +A + Q D + +I + G + W+ + +V +L
Sbjct: 1050 DVATSGNEALQLMRQ---------QHDSGITYGALFIDWQMPGLDG----WQTSKYVREL 1096
Query: 790 ------PKLILLATN-----ISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
P ++++ + + + E D+A G+ ++KP+ ASM+ + LS
Sbjct: 1097 MPVDNGPMIVMITAHDREMLLQRSEEDQALLDGY----LVKPITASMLLDSVIDALSERK 1152
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ + V S L G ++L+V+DN N+ +A L+ GA V A K A++
Sbjct: 1153 QPDITKQVITEPSHR---LSGIRLLIVEDNLNNQQIARELLEDEGADVRIANHGKEAIEI 1209
Query: 899 LQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L+ P FD MD+QMP MDG+ AT+ IR+ N LPI
Sbjct: 1210 LEHHPSLFDLVLMDLQMPVMDGYNATKYIRKSLGLKN--------------------LPI 1249
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+AMTA+ + + D CL GM+ ++ KPF+ NL + + K+
Sbjct: 1250 IAMTANAMASDRDACLAAGMNDHIGKPFDLNNLIQVIRKY 1289
>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417953729|ref|ZP_12596772.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342816845|gb|EGU51738.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 1199
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 193/638 (30%), Positives = 295/638 (46%), Gaps = 115/638 (18%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A +A+ AKS FLA +SHEIRTPMN I+GM L L TDL+ QR+Y ++ +L+ LI
Sbjct: 474 ANSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLLGLI 533
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++E V F+L E VL +
Sbjct: 534 NDILDFSKIEAGKLDIENVDFHL-------------------------------ENVLDN 562
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
ITNLVG ++ +ERG + + +H+ ER + T D R G
Sbjct: 563 -------ITNLVG--LRASERG-LELLIHI-ERDVPTTLVGDP-----------LRLGQV 600
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLMVCVEDTGI 613
N + +A F I I++ + +DV L VED+GI
Sbjct: 601 LINLAN------------------NAVKFTEKGEIKISVRVAKRQGDDVELEFSVEDSGI 642
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +++F F QADSST+R YGGTG+GL+ISK L +LM G I S GS FSF
Sbjct: 643 GMTKEQTDKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIRVESEFGQGSRFSF 702
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
+ + K + +D + +P LK ++VD+ + + L+ L + S
Sbjct: 703 S-IATKVSHALKQD-----NVSMPVELGKLKVLIVDDNASARIIVEDILHSLQFEAQSVS 756
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLDWKPNGHVFKLPKL 792
++ D A N L ++ + P +L+ D + G+D + H PK+
Sbjct: 757 NVDD----ALNALETASQQQSPYDLLI-SDWQMPGKDGIDLVESVYQRFTENHQ---PKI 808
Query: 793 ILLATNISKDECDKAKAGGFADTVIM-KPLRASMI---AACLQQVLSTENKRQAGRGVPN 848
++L +D D G I+ KP+ AS + L V +T R +
Sbjct: 809 LMLTAYGREDLNDAFTHRGLTTPSILDKPVTASHLFDAVIALYGVANTRISRSEAQEQHQ 868
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
++ Q L G +L+V+DN +N+ +A L+ V A + + A+D + H FD
Sbjct: 869 LANVQQ--LAGAHLLLVEDNAINQELAVELLQGQQIKVTIAVNGQEAVDYYKQ-HDFDGI 925
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MD QMP MDG+EAT+ IRQ ++QMM PI+AMTA+V+
Sbjct: 926 LMDCQMPIMDGYEATQFIRQT---LDDQMM-----------------PIIAMTANVMERD 965
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFKSK-PLSG 1005
+ GM+ ++KP + +++ LAK+ K PL+
Sbjct: 966 KVKAQNAGMNDIIAKPIDVGSMFSTLAKWVTPKTPLAA 1003
>gi|413955005|gb|AFW87654.1| hypothetical protein ZEAMMB73_662214 [Zea mays]
Length = 963
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 184/648 (28%), Positives = 290/648 (44%), Gaps = 82/648 (12%)
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443
Q LAT+SHEIR+P++G+L M +L T L Q + G ++ LIN++LD +K+
Sbjct: 368 QMLATMSHEIRSPLSGVLSMAEILATTKLDKEQHQLLEVMLSSGDLVLQLINDILDLSKV 427
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
E+ ++LE+ F R ++ VL + S K + L + D VP V+GD R RQI+T
Sbjct: 428 ESGAMKLESTTFRPREVVKHVLQT-AAASLKKELTLVGCIGDDVPVEVIGDVLRIRQILT 486
Query: 504 NLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC--RSGTGQFNTLSG 561
NL+ N+VKFT G + + + + E L E G R+ +G T +
Sbjct: 487 NLISNAVKFTHEGKVGINLQVVH----------EKQLGCKIEIGKIHKRAYSGTAITAAE 536
Query: 562 LEAADGRNSWDKFKHLIDAE-GFQSNASIINMMASNGGSEDVTLMVC-VEDTGIGIPLSA 619
A RN H E FQ+ + E+V + C V DTGIGIP +
Sbjct: 537 TAAVSTRNCDKDTLHCSKHEDAFQNGVPTCENFKEDIEGEEVVWLRCDVYDTGIGIPEKS 596
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
+F +MQA + +R YGGTG+GL+I K LVELM G ++ VS+ GSTF+F
Sbjct: 597 LPLLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGTLTVVSKENEGSTFTFVL---P 653
Query: 680 CK-----------EYVFEDIKQSKSEDLPPGF---KGLKAVVVDEKPVRAAVTQYHLNRL 725
CK + + S + D+ F ++A ++ P + + L
Sbjct: 654 CKIPVKDEHSDDPDEMHSSQNDSANSDIEGSFFFKPQMRASLL--SPGVSIMNNTKLIGA 711
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP-NG 784
+M I NG +S+E F + + + +G + + +P N
Sbjct: 712 KLMCYDPPDISHDRKLFSNGFSSTEHNF--------TNTCTAHQPNGASVRSTAEEPDNA 763
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
V +L A +S D G A AC +VL ++ + +
Sbjct: 764 MVLELNS---QAERVSSSRGDLVSVSGAA--------------AC--KVLEEQSLHKKPK 804
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
P G+ L+ K+ ++ VA L++ G ++ + A+ +Q H
Sbjct: 805 CSPIGNKAKILLVEDNKVNII--------VAKSMLEQLGHGIDIVNNGMQAIRAVQQ-HQ 855
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMES--------KANEQMMNGGSSVDGT---AKRDEL 953
+D MD+ MPEMDG +AT+ IR E+ K + M GS + AK+
Sbjct: 856 YDLILMDVHMPEMDGLQATKHIRYFENTGCWDVSVKPEDNRMITGSVISSDCAHAKKQGQ 915
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+PI+AMTA+ + +ECL GMD Y+SKP +N+ L ++ S+
Sbjct: 916 RVPIIAMTANSFAESSEECLAAGMDSYISKPVNFQNIKECLQRYLMSQ 963
>gi|436839859|ref|YP_007324237.1| Hpt sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432168765|emb|CCO22131.1| Hpt sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 925
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 186/660 (28%), Positives = 293/660 (44%), Gaps = 148/660 (22%)
Query: 361 VEDDFHKMQEL-------KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS 413
+ED + +++++ K AE A +KSQF+A VSHEIRTPMN I+GM L L TDL
Sbjct: 249 LEDSYKELKQINKELEYAKDAAETASKSKSQFMANVSHEIRTPMNAIIGMADLTLSTDLG 308
Query: 414 STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSR 473
+ QR++ + G+ L+ LIN++LD +K+EA KL LE V +NL ++ ++ LF E+
Sbjct: 309 AKQREFLKIILSSGRVLLRLINDILDFSKVEAGKLTLEEVNYNLHQLIHEISDLFVEQMV 368
Query: 474 NKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTD 533
EL + + VP+ V+GDP R +Q++ NL N+ KFT G + + V T KT+
Sbjct: 369 ASQTELVIDIRPDVPQRVIGDPLRLKQVLVNLTANAFKFTNEGEVTITVSADMITHNKTE 428
Query: 534 AKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMM 593
++ + G+ S Q + + ADG +
Sbjct: 429 -----IVFAIKDTGIGISEEIQPHLFEAFKQADGSTT----------------------- 460
Query: 594 ASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVE 653
GG TG+G+ +S K +V+
Sbjct: 461 RKYGG------------TGLGLTIS------------------------------KRIVD 478
Query: 654 LMRGQISFVSRPQVGSTFSFT-----AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
LM G I S+P GSTF FT A EY LP +V+
Sbjct: 479 LMGGSIWVRSKPDYGSTFFFTITPEIAPDTSATEYT-----------LPAELNEAPVLVI 527
Query: 709 DEK-PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDI---ILVEKDC 764
D+ VR+ +++Y L + G + S+A+ GL E K + D+ IL++
Sbjct: 528 DDNLAVRSVLSRY-LTQFGF-------VPTTVSSAEEGLELIE-KRKDDLFKFILIDLKL 578
Query: 765 WISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
D + P +LP L++ +T I + KA G +I KP++ +
Sbjct: 579 PDMNGDEASKIIRKTYSPE----ELPILMITSTEID-EALSKANESGIT-KLISKPIKQT 632
Query: 825 MIAACLQQVLSTENKRQAGRGVPNGSSFH-----QGLLRGKKILVVDDNGVNRMVAAGAL 879
+ + +L+T G V ++ + G IL+V+DN +N+ VA L
Sbjct: 633 ---SLYETILNT-----FGHEVHKDYAYEPFKKIEEEFNGFNILLVEDNPINQQVAVQIL 684
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIR-QMESKANEQMM 938
G T++ A + K A++K+Q+ +D MDIQMPEMDG+EAT IR Q+ K
Sbjct: 685 TATGLTIDTALNGKEAVEKIQN-SSYDLVLMDIQMPEMDGYEATGIIRNQLGLK------ 737
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP++AMTA + ++CL GMD Y+ KP +++ + + F
Sbjct: 738 ---------------ELPVIAMTAHAMRGDKEKCLLAGMDDYIPKPIDKDQMISTIRSFL 782
>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
gi|119863342|gb|ABM02819.1| amino acid-binding domain sensor hybrid histidine kinase
[Psychromonas ingrahamii 37]
Length = 1574
Score = 209 bits (531), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 224/433 (51%), Gaps = 37/433 (8%)
Query: 574 FKHLIDAEGFQSNASIINMMASNGGSED--VTLMVCVEDTGIGIPLSAQERVFMPFMQAD 631
F +LI+ +N I + AS +D V L+ V DTG+GIP +F PF QAD
Sbjct: 947 FTNLINNAIKFTNKGQITICASCLEKDDKQVRLLFSVADTGLGIPKDRIASLFEPFAQAD 1006
Query: 632 SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQS 691
STSR +GGTG+GLSI K LVE M G+I S GS FSF FG + QS
Sbjct: 1007 GSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSVFSFELEFG---------VSQS 1057
Query: 692 KSED---LPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTS 748
++ LPP +GL A+VVD+ PV V + L L V + S + A S +N L +
Sbjct: 1058 NEDNKLLLPPALRGLHALVVDDNPVTLKVIEKMLIHLKFNVTTTESGEKALSVLENALGN 1117
Query: 749 SEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAK 808
+ D+ ++ D + G D A+ + K N + K+P +++ ++ K+K
Sbjct: 1118 N----TVDLAII--DWQMGGIDGIETAKKI--KENPSIPKMPMVLMSGSDRDGLLGQKSK 1169
Query: 809 AGGFADTVIMKPLRASMIAACLQQVLSTEN--KRQAGRGVPNGSSFHQGLLRGKKILVVD 866
GF D+ ++KP+ S++ + V + + R + S+ + G KIL+VD
Sbjct: 1170 QVGF-DSFVLKPVNRSILVETILTVFGYRDDINKNLKRKIKVDSA-RLDAIGGAKILLVD 1227
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRI 926
DN +NR VA L+ G V A + + A++ ++S H FDA MD+QMPE+DG+EAT++I
Sbjct: 1228 DNEINRQVAREFLENAGLLVTTATNGREAVNSVKS-HVFDAVLMDVQMPEIDGYEATQKI 1286
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R+ E + GS V LPI+AMTA + + CL GM+ YV+KP +
Sbjct: 1287 RRWEKTRVDLQPTDGSPV----------LPIIAMTAHAMEGDKERCLAAGMNDYVTKPID 1336
Query: 987 EENLYRELAKFFK 999
L+ L+++ K
Sbjct: 1337 TRQLFEALSRWIK 1349
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 93/143 (65%)
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEV 437
A++AKS+FLA +SHEIRTPMN I+G+ L L+ D++ RDY G +L+ +IN +
Sbjct: 823 ANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTPQLRDYLSKIHSSGNSLLGIINGI 882
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD +KIEA KL+LE + F+L +LD++ + F K IEL + VP ++GDP R
Sbjct: 883 LDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPDVPWHLVGDPLR 942
Query: 498 FRQIITNLVGNSVKFTERGHIFV 520
QI TNL+ N++KFT +G I +
Sbjct: 943 TGQIFTNLINNAIKFTNKGQITI 965
>gi|410642356|ref|ZP_11352868.1| hpt sensor hybrid histidine kinase [Glaciecola chathamensis S18K6]
gi|410138028|dbj|GAC11055.1| hpt sensor hybrid histidine kinase [Glaciecola chathamensis S18K6]
Length = 1534
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 191/640 (29%), Positives = 283/640 (44%), Gaps = 139/640 (21%)
Query: 366 HKMQEL-KVR--AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQT 422
H M+E K R AE A KS FLA +SHEIRTPMNG+LGM +LL +DL Q+ +AQ
Sbjct: 846 HAMEETEKARRLAEQASKEKSDFLAIMSHEIRTPMNGVLGMTEVLLSSDLKPKQQHFAQL 905
Query: 423 AQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVF 482
G+ L+ L+N +LD +K+EA K LE+V +L A++++V LFSE + NKG+ +
Sbjct: 906 VYRSGRLLLDLLNNILDFSKLEAGKATLESVPVDLEALIEEVTDLFSEAAYNKGLNINAI 965
Query: 483 VSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNG 542
+S + V DP R RQII NL N++KFTERG V V++ D+ G
Sbjct: 966 LSPEPLPQVYADPARLRQIIANLTSNAIKFTERGE--VNVNIKRVECHNIDS-------G 1016
Query: 543 GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
G + V SG
Sbjct: 1017 GNDTDVQHSG-------------------------------------------------- 1026
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
+ CV+DTGIG+ Q++VF F QAD+ST+R YGGTG+GL+I K L LM G +
Sbjct: 1027 -FVFCVQDTGIGMAPDRQQKVFEMFTQADASTTRKYGGTGLGLAICKQLTALMGGNLGLQ 1085
Query: 663 SRPQVGSTFSFTAVFGKCKEYV--FEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GS FS ++ + E I + L GL + +
Sbjct: 1086 SNIGEGSRFSLEVDLPLTEKPLQQLESIVNCPTVHLVNLTGGLGQSI-----------EI 1134
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L +L + +K ++AKNGL S +++ ++ D+G L +W
Sbjct: 1135 MLGKLKVKAVHVQRVKSELASAKNGLWISHAEYERTLL-----------DAGI--PLSNW 1181
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ LL T+ ++ + ++ P+ S + + + L EN+
Sbjct: 1182 -----------ICLLPTSQWQENDTR--------NILPLPVHFSGLHNSISRALGIENEE 1222
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK-- 898
Q + + + HQ ILV +D+ N+ VA L G A + A+++
Sbjct: 1223 Q--KRLDDDLRNHQRF--EANILVAEDSLTNQEVAKSMLGLLGCEAWLADNGAEAVEQIN 1278
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
LQ P D MD QMP MDG+ ATR IR ++ LPI+
Sbjct: 1279 LQRP---DLVLMDCQMPVMDGYAATRAIR----------------------KNWPDLPIV 1313
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
A+TA + +CL GM+ +SKPF + L + L +F
Sbjct: 1314 ALTAGMGDNLRQQCLDAGMNEVMSKPFSLQELEQTLLRFL 1353
>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
Length = 1223
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 192/674 (28%), Positives = 310/674 (45%), Gaps = 116/674 (17%)
Query: 338 FFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPM 397
FVI LL+G + A +E H + + A+AA+ AKS FLA +SHEIRTPM
Sbjct: 439 LIFFVIILLMGLLANKAH---SALETFTHSLAAARDEADAANHAKSDFLANMSHEIRTPM 495
Query: 398 NGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457
N I+GM L L TDL+ QR+Y ++ L+ LIN++LD +KIEA KL++E V F L
Sbjct: 496 NAIIGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQL 555
Query: 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH 517
+LD++ +L ++ ++G+EL + V VP ++GDP R QI+ NL N+VKFTE+G
Sbjct: 556 ENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPLRLGQILINLSNNAVKFTEKGE 615
Query: 518 IFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHL 577
+ + + +AER D+ LN V SG G++ + KF
Sbjct: 616 VKISISVAER------QGDDIKLNF----AVSDSGI-------GMKQEQASKLFTKFT-- 656
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
Q+++S GG TG+G+ +S + M
Sbjct: 657 ------QADSSTTRKY---GG------------TGLGLAISKELSQLM------------ 683
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
G I +S EL +G STFSFT V I+Q + +P
Sbjct: 684 --GGDIHVS-----TELGKG-----------STFSFT-----IATRVSHSIQQHRVV-VP 719
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
LK +VVD+ + L L + +SSS+ +A L +++ + +P D
Sbjct: 720 ASINNLKVLVVDDNSSARLIVGDILESLKLTPTLSSSVDEALIE----LHTADAQNKPFD 775
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGF-ADT 815
+++ + W + G + LL NG +PK+++L ++ + + GF +
Sbjct: 776 LVISD---WKMPKRDGVD--LLAELKNGQQLTMPKIMMLTAYDREELAELIEQRGFEVPS 830
Query: 816 VIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF-HQGLLRGKKILVVDDNGVNRMV 874
++ KP+ +S + + + ++ R + + + + L G IL+V+DN +N+ +
Sbjct: 831 ILDKPITSSHLYDSIVSLYGLDSDRVSRSELEQQNQLANVQQLAGANILLVEDNEINQEL 890
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHC----FDACFMDIQMPEMDGFEATRRIRQME 930
A L+ V A + + A+D Q FD MD QMP MDG+EAT IR
Sbjct: 891 ATELLEGQQIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYEATLHIRN-- 948
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
K + PI+AMTA+V+ ++ L CGM ++KP + ++
Sbjct: 949 ------------------KIKDTQTPIIAMTANVMERDKEKALNCGMTDIIAKPIDVGSM 990
Query: 991 YRELAKFFK-SKPL 1003
+ LA + S P+
Sbjct: 991 FATLANWVSPSNPV 1004
>gi|392544011|ref|ZP_10291148.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas piscicida JCM
20779]
Length = 1243
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 181/635 (28%), Positives = 279/635 (43%), Gaps = 125/635 (19%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K A+ + AKS+FLA +SHEIRTPMN I+GM L L T+L++ Q DY K
Sbjct: 490 EAKDLAQNSAKAKSEFLANMSHEIRTPMNAIIGMSHLALATELNAKQHDYVSKIDTAAKQ 549
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ LIN++LD +KIEA K+ELE F+ +LD+V ++ S K++ K +EL + +VP
Sbjct: 550 LLRLINDILDFSKIEAGKIELEYQAFSTEKLLDNVATIVSVKAQEKQLELVFDIDSQVPY 609
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+GD R Q++ NL GN+VKFTE G + ++V L E+G+
Sbjct: 610 CVIGDQFRISQVLINLAGNAVKFTETGEVVIRVALV-----------------NVEKGLA 652
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
+ ++ G+ +N + F Q++ SI GG
Sbjct: 653 KIKFSVKDSGIGMNKRQQKNLFQSFS--------QADNSITRKY---GG----------- 690
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
TG+G+ +S Q LV+LM G+I S VGS
Sbjct: 691 -TGLGLTISQQ------------------------------LVKLMGGEIYVESEENVGS 719
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F FT + V +++ Q+K L A ++D+ V L G+ V
Sbjct: 720 EFYFT-----LEMEVSDELSQAKMAS--THLSELSATIIDDNQHALDVLSGMLTNFGMQV 772
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S D A N ++D PD+I V+ W + G + K V
Sbjct: 773 ---CSYLDPHK-ALNQFVLTQDL--PDLIFVD---WHMPKLDGIE---MITKLQSQVDVS 820
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ-------QVLSTENKRQA 842
+L T ++ D V++KP+ S + +Q +V +T K++
Sbjct: 821 QSKFILVTAYGRELNLSDSQASLVDGVLLKPINPSNLVDVIQNAVFDSPEVRTTITKKE- 879
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
+ + L G ILV +D VN+ +A L FGA V A + + A++++ S
Sbjct: 880 -------QTISKQALNGLSILVAEDQPVNQEIAVEILSSFGAQVAVADNGQEAIEQVHSK 932
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H D MD+QMP MDG AT+ +R + D+ LPILAMTA
Sbjct: 933 H-IDIVLMDMQMPVMDGITATQNLR--------------------IEFDKNTLPILAMTA 971
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ + C+ GM+ +V+KP + E L + + K+
Sbjct: 972 NAMEEDIQTCIDAGMNDHVTKPIDVEQLVKSILKY 1006
>gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid
protein [Rhizobium etli CIAT 652]
gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator
hybrid protein [Rhizobium etli CIAT 652]
Length = 1126
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 191/650 (29%), Positives = 293/650 (45%), Gaps = 130/650 (20%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++EL RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 577 ELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKS 636
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 637 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 696
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V +T A E + N E
Sbjct: 697 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGF------ETVAGGEIMANIRIE- 749
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+T G+ + +DKF +DA + +
Sbjct: 750 ----------DTGIGIPEEKLESVFDKFSQ-VDASSTRRH-------------------- 778
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ +I+ LV+L G I S+
Sbjct: 779 --EGTGLGL------------------------------AITAGLVDLFGGYIKVESQWG 806
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F ++ + + LP +G + +V+D+ V + L+ G
Sbjct: 807 EGSVFTVNLPFAVAAAHL-------EPKPLPINVQGARILVIDDNEVNRRILTEQLSLWG 859
Query: 727 I----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ + + A G+T D PD ++G D A+ L
Sbjct: 860 FDGVAAEGGGTGLAILEAAADLGVTVDAVILDYHMPD---------MNGADV---ARRLR 907
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI---------AACL 830
P +LP + L + +IS E + A G A +MKP RA+++ A +
Sbjct: 908 ADP--RFVELPIIFLTSMDISGTEKEFAALNGQAH--LMKPARANVLRNTVVEVVRARRV 963
Query: 831 QQVLSTENKR-QAGRGVPNGSSFHQGLLRG-KKILVVDDNGVNRMVAAGALKKFGATVEC 888
+Q E R QA VP Q +LV +DN VN++V L+ G +
Sbjct: 964 KQASQAEIARLQAETSVPAPVPAPQKRAADFVDVLVAEDNEVNQIVFTQILQGTGLSFLV 1023
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ + A+ +S H MD+ MP M+G EATR IR+ E G +
Sbjct: 1024 VNNGEQAVAAWES-HTPRIIMMDVSMPVMNGHEATRTIREKEK--------------GQS 1068
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+R +PI+ +TA + + + CL GMD Y+SKP E L ++ ++
Sbjct: 1069 QR----VPIIGVTAHALESGREACLDAGMDDYMSKPISPELLEEKIRQWL 1114
>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
Length = 778
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 181/645 (28%), Positives = 281/645 (43%), Gaps = 131/645 (20%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E +++E + AE A+ AKS FLA +SHEIRTPMNGI+GM LL +TDL++ QRD
Sbjct: 248 RIEQRDAELREARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQETDLNAAQRDC 307
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ Q AL+ +IN++LD ++IEA +LELE + F+ R ++ L E ++ KG+E
Sbjct: 308 TRVIQDSAAALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRKGLEF 367
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
A+ + ++P + GDPGR RQI+TNLV N++KFTE+G + V + ERT
Sbjct: 368 AIELDPELPARLRGDPGRLRQILTNLVSNAIKFTEQGRVSVTLDCLERT----------- 416
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
+ W +F + G + + +
Sbjct: 417 -----------------------------DDWVRFVIAVRDTGIGLSTEECSRLFERFSQ 447
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
DV+ TG+G+ +S Q LVELM G I
Sbjct: 448 ADVSTRRRYGGTGLGLAISRQ------------------------------LVELMGGGI 477
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG----FKGLKAVVVDEKPVRA 715
S+P +GS F E V E S + PP GL+ +V+ ++P A
Sbjct: 478 DVESKPGLGSVFRV--------ELVLE------SSESPPAVDRRLAGLQTLVLVQEPSLA 523
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
A L LG+ V+ +S+ A +A LT + D++L+E + + S +
Sbjct: 524 AQLGGMLEDLGMSVEHQTSLAAAIESA---LTRAARGQTFDVLLLEHEQ-LPAPTSPAGS 579
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC---LQQ 832
L H L +L +A+ G D + L + LQ
Sbjct: 580 LL-------HEMSARALAVLRL--------RARGGAAGDDPVWGRLPEIGLPPTHVELQN 624
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
LS + + G G+ L G ++LV +DN N+ V L VE +
Sbjct: 625 GLSAIIRSRGAGGHGEGAKQRPSL--GLRVLVAEDNPANQRVIEWMLTALDCEVELHPNG 682
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
++ L+ + D MD QMP MDG+E TRR+R++ES +
Sbjct: 683 RSLLESFTA-RPADLVLMDCQMPVMDGYETTRRLRKLESALGRR---------------- 725
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+PI+A+TA + + + GMD ++SKPF E L L ++
Sbjct: 726 --VPIIAVTAQAMAGDRERVIAAGMDDHLSKPFTLEALATLLTRW 768
>gi|386818422|ref|ZP_10105640.1| histidine kinase [Thiothrix nivea DSM 5205]
gi|386422998|gb|EIJ36833.1| histidine kinase [Thiothrix nivea DSM 5205]
Length = 774
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 197/684 (28%), Positives = 304/684 (44%), Gaps = 147/684 (21%)
Query: 339 FLFVIGLLVGYILYGAAIH-IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPM 397
L ++ LL+ + + + + IV+ ++ AE A K++FLAT+SHEIRTPM
Sbjct: 215 LLIIVFLLISRLYFSSRFNLIVQTATAAQRI------AEEAVKTKARFLATMSHEIRTPM 268
Query: 398 NGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457
NG++GM LL++T +S Q ++ ++ ++ G+ L+ +IN+VLD +KIEA KL+L+ F L
Sbjct: 269 NGVIGMTRLLMNTPMSKKQTEFTESIRLSGEHLLTVINDVLDFSKIEAGKLDLKRESFEL 328
Query: 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH 517
R+ +++VL+L S K+ K +ELA V+ +P ++ GD R RQI+TNL+GN++KFT+ G+
Sbjct: 329 RSCIEEVLNLLSAKALEKKLELAYVVAPNIPLYIEGDMVRLRQILTNLIGNAIKFTDSGN 388
Query: 518 IFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHL 577
+ V V+L DE L E S TG G+ A + +++F H+
Sbjct: 389 VTVVVNLH-------TCHDEDL-----ELEFEISDTG-----CGIPADRLDSVFEQFSHI 431
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
D + E TG+G+
Sbjct: 432 DDGQTRH-----------------------YEGTGLGL---------------------- 446
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT----AVFGKCKEYVFEDIKQSKS 693
SIS+ LVE+M G+I S GS F FT A G K + +I
Sbjct: 447 --------SISRNLVEMMGGRIWVKSILNKGSRFHFTIRTRATEGSLKLFHHSNI----- 493
Query: 694 EDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKF 753
P G ++V A Q R G + +S DA + + E +
Sbjct: 494 ----PSLSGKHLLLVTNSLTSAQSVQDFCARWGAKADIKTSAADAINR-----IAGESVY 544
Query: 754 QPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK------LPKLILLATNISKDECDKA 807
DI+LV+ + EDS G+V + LP LIL+A D +
Sbjct: 545 --DIVLVDSNL---PEDSALEVA-------GYVRQRYSKQELP-LILIAP--PNDLLPRE 589
Query: 808 KAGGFADTVIMKPLRASMIAACLQQVLSTEN---KRQAGRGVPNGSSFHQGLLRGKKILV 864
+ + KP+ S + L VL N RQ S+ IL+
Sbjct: 590 TVRELYNLYLTKPVTRSRLFDSLMTVLGELNLVTNRQ------KTSTLKLAERLPLTILL 643
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATR 924
+DN +N++VA+ L + G ++ A + + A+ L + +D FMD+QMPEM G E TR
Sbjct: 644 AEDNPINQVVASSILDEMGYKIDLAENGRQAIAALHKKN-YDVIFMDMQMPEMGGLETTR 702
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
IR A + I+AMTA+ + ECL GM+ Y+SKP
Sbjct: 703 HIRAEFPPARQP-------------------AIIAMTANAMDGDRQECLNAGMNDYISKP 743
Query: 985 FEEENLYRELAKFFKSK--PLSGA 1006
E + L ++ K K PL A
Sbjct: 744 VLPEAVEAALEQWCKKKADPLPMA 767
>gi|421590989|ref|ZP_16035913.1| two-component sensor histidine kinase/response regulator hybrid
protein [Rhizobium sp. Pop5]
gi|403703640|gb|EJZ19820.1| two-component sensor histidine kinase/response regulator hybrid
protein [Rhizobium sp. Pop5]
Length = 1021
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 193/652 (29%), Positives = 292/652 (44%), Gaps = 132/652 (20%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++EL RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 470 ELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKS 529
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 530 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 589
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V ET+ G
Sbjct: 590 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGF------------ETIAGGEIMA 637
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ TG G+ + + +DKF +DA + +
Sbjct: 638 TIRIEDTG-----IGIPSEKLASVFDKFSQ-VDASSTRRH-------------------- 671
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ ++A LV+L G + S
Sbjct: 672 --EGTGLGLAITA------------------------------GLVDLFGGYLDVDSEWG 699
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F + + + LP +G + +VVD+ V + L+ G
Sbjct: 700 KGSVFTVNLPFAVAAARL-------EPKPLPINVQGARILVVDDNEVNRRILTEQLSLWG 752
Query: 727 I----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ + + A G+T D PD ++G D A+ L
Sbjct: 753 FDGVAAEGGGTGLAILEAAADLGVTVDAVVLDYHMPD---------MNGADV---ARRLR 800
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI---------AACL 830
P +LP + L + +IS E + A G A +MKP RA+++ A +
Sbjct: 801 ADP--RFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVVRARRV 856
Query: 831 QQVLSTENKR-QAGRGVPNGSSFHQGLLRGKK---ILVVDDNGVNRMVAAGALKKFGATV 886
+QV E R QA P S R + +LV +DN VN++V L+ G +
Sbjct: 857 KQVSEAEIARLQAEAAAPAPESAPVPQTRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSF 916
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
+ + A+ QS H MD+ MP M+G EATR IR++E G
Sbjct: 917 LVVNNGQEAVAAWQS-HTPRIIMMDVSMPVMNGHEATRTIRKLEQ--------------G 961
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+R +PI+ +TA + + D CL GMD Y+SKP E L ++ ++
Sbjct: 962 QGRR----VPIIGVTAHALESDRDLCLDAGMDDYMSKPISPELLEEKIRQWL 1009
>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 818
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 185/639 (28%), Positives = 286/639 (44%), Gaps = 124/639 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E+ +++ A++A+ AKS FLA +SHEIRTPM G+LGM LLL+TDLS Q +
Sbjct: 164 QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTDLSKEQARF 223
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
++ + G+AL+ +IN +LD +KIEA ++ELE + F+L + D +++F+E + KGI L
Sbjct: 224 VESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDAAKKGIAL 283
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA-ERTMVKTDAKDET 538
+ + +P GDPGR RQ++ NL+GN+VKFT G + + V LA E +V+ +D
Sbjct: 284 SCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLAREPALVRVTVED-- 341
Query: 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
T G+ R + +D F A+G +S M GG
Sbjct: 342 -----TGIGISRESQERI--------------FDHF-----AQGDES------MTRRYGG 371
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
TG+G+ ++ Q L ELM G
Sbjct: 372 ------------TGLGLAIAKQ------------------------------LTELMGGV 389
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ S P G++FSFT K + E + +A++ + P +
Sbjct: 390 MELSSEPGEGASFSFTVALKPHH-------KAPRPERSYSALRSKRALLASDDP---ELQ 439
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ L G + + DA L + D LV D ++G D A +
Sbjct: 440 ETLLELTGGLGMDLDCVGDAPGALCRLLAAPFD-------LVLMDHCVAGTDGLALAATI 492
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKP-LRASMIAACLQQVLSTE 837
GH +L+LLA ++ + T++ + L + A L L E
Sbjct: 493 RSIAVGHCV---RLVLLAEEPEAAPAERVRE--IEVTLLRRTNLTREGLYAALASALGME 547
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
++ G P Q LL V+DN VN+ V G L+ G V+ A + AAL
Sbjct: 548 EEQGEGEDAPTLRRLRQVLL-------VEDNVVNQEVGRGMLESLGCRVKVAENGLAALK 600
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
++Q +D FMD QMP +DG ATRRIRQ E +G++ R +PI
Sbjct: 601 EVQRRK-YDLIFMDCQMPVLDGLGATRRIRQRE--------------EGSSSR----VPI 641
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+A+TA + + CL G D Y+SKPF E L + + +
Sbjct: 642 IALTAYAMKGDREACLAAGADDYLSKPFSREQLSKSIER 680
>gi|430747804|ref|YP_007206933.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019524|gb|AGA31238.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 912
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 182/664 (27%), Positives = 294/664 (44%), Gaps = 119/664 (17%)
Query: 350 ILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
++YG A + + + +++ K AEAA+ AK FLA VSHEIRTPMN ILGM L LD
Sbjct: 224 LIYGIARDVTQAKHAEEELRLAKETAEAANRAKDAFLANVSHEIRTPMNAILGMTELTLD 283
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
T L+ QR Y T + AL+++IN++LD +KIEA KLEL+ F+LR +L + L +
Sbjct: 284 TPLTDEQRKYLATVKTSADALLSVINDLLDFSKIEAGKLELDFADFSLRRVLGETLRALA 343
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529
++ KG+EL + VP+ ++GD GR RQ++ NL+GN++KFTE+G I V+V T+
Sbjct: 344 FRAHRKGLELVCQIQPDVPDALIGDAGRLRQVLLNLIGNAIKFTEQGEIVVRVE----TV 399
Query: 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589
KD + G + +G G DK + + A F+ S
Sbjct: 400 PAPGTKDS--IPPGLLFSIVDTGIG--------------IPLDKQQKIFQA--FEQQDS- 440
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ GG TG+G+ +++Q M GG +
Sbjct: 441 -STTRKYGG------------TGLGLSIASQLVALM-------------GG--------Q 466
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
VE + G+ GSTF FT F + + ++ ++ GL+ ++VD
Sbjct: 467 ITVESVPGR---------GSTFCFTVHFAEHPHPIDHPFERPLTD-----LHGLRILIVD 512
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII-----LVEKDC 764
+ T H I+ + S K ++ +GL + + ++ + LV D
Sbjct: 513 DN-----ATNRH-----ILEEWLRSWKTDPTSVGDGLKALDALWRGVALGRPFSLVLLDA 562
Query: 765 WISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
+ G D A + P ++ILL + + + + G A MKP++
Sbjct: 563 RMPGTDGLALAASILQSPE---LSASRIILLTSEDLHGDIARYRTLGIA-AYTMKPVQQE 618
Query: 825 MIAACLQQVLSTENKRQAG-------RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAG 877
+ + +VLS + VP + LR +LV +DN +N+ +
Sbjct: 619 ELLEIIHRVLSRPTPAEPAAPTATTTSPVPVDPAESGSRLR---VLVAEDNPLNQELVEH 675
Query: 878 ALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
L++ G V AL+ + H FD +D+ MPE DGF+ +RQ E E
Sbjct: 676 LLRRRGHDVVVVGDGLEALNAIDR-HDFDLSLLDVHMPEFDGFQVIEAVRQREQSTGE-- 732
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
HLP++AMTA + + CL+ GMD Y++KP L+ + +
Sbjct: 733 ----------------HLPVIAMTALAMKGDRERCLEAGMDDYLAKPIRASALFAVIDRV 776
Query: 998 FKSK 1001
++
Sbjct: 777 LANR 780
>gi|398804151|ref|ZP_10563151.1| signal transduction histidine kinase [Polaromonas sp. CF318]
gi|398094686|gb|EJL85044.1| signal transduction histidine kinase [Polaromonas sp. CF318]
Length = 1137
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 186/630 (29%), Positives = 267/630 (42%), Gaps = 139/630 (22%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
T+SHEIRTP+NG++GM LL DT L QRDY T ++ L+ +IN+VLD +KIE+ K
Sbjct: 482 TMSHEIRTPLNGVVGMTTLLADTPLDPEQRDYLHTMRVSSDQLLGVINDVLDFSKIESGK 541
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L+LE NL A +++ + + ++R KG+EL V + D++P +V GD R RQ++ N V
Sbjct: 542 LDLENEPLNLLATIEEACDIGAPRAREKGLELLVDMGDELPTWVRGDVTRLRQVLLNFVN 601
Query: 508 NSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG-TEEGVCRSGTG-QFNTLSGLEAA 565
N+VKFTERG + V H+ E D T GG E V SG G + S L
Sbjct: 602 NAVKFTERGQVIVSAHVLE---------DATPERGGLIEFRVKDSGIGIPLDRQSAL--- 649
Query: 566 DGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFM 625
FQS + G + L +C G+
Sbjct: 650 -----------------FQSFTQVDTSTTRKYGGTGLGLAICKRLAGL------------ 680
Query: 626 PFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVF 685
G G+GL S P GSTF FTA G
Sbjct: 681 -------------MGGGVGLE----------------SAPGQGSTFWFTARLGYADA--- 708
Query: 686 EDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNG 745
+I Q S + G +A+VVD+ PV + L R G M ++ + +S A +
Sbjct: 709 PEIAQLSSLHM-VSLAGKRALVVDDTPVNLRILDKQLRRWG----MEPALFERASEALDW 763
Query: 746 LTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL-DWKPNGHVFKLPKLILLATNISKDEC 804
L S QP + +V D + D AQ L + P+ I+L T+ +
Sbjct: 764 LRS-----QPPVDVVVTDMHMPEMDGQTFAQTLRERHPDTR-------IVLLTSGTMPTG 811
Query: 805 DKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN--KRQAGRGVPNGSSFHQGLLRGKKI 862
++A+ D ++KP R S + + +V S ++ K A G P R + I
Sbjct: 812 EQAR---VFDARLLKPYRQSQLFEAIARVTSAQDAAKAVAEAGKPES--------RNQFI 860
Query: 863 LVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS-------------PHCFDACF 909
LV DDN VN VA L K G A + + A D++ + P + A
Sbjct: 861 LVADDNAVNLKVALAMLAKLGYEAATALNGREAADRVAASLRPEGGVSSRDGPRPYAAVL 920
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MD MP MDGF A+R I A PI+A+TA V+
Sbjct: 921 MDANMPVMDGFAASREIIAAHGAAAP--------------------PIIALTASVLEEDR 960
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFK 999
CL GM G++ KP + L LA++ +
Sbjct: 961 QRCLAAGMVGFLPKPLRIDELSEALARYAR 990
>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum So ce56]
gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum So ce56]
Length = 949
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 191/650 (29%), Positives = 293/650 (45%), Gaps = 121/650 (18%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVA---KSQFLATVSHEIRTPMNGILGMLALL 407
L G+A + + VE + +EL+V+ E A A KS+FLA +SHEIRTPMNGILG++ L+
Sbjct: 282 LLGSAFNSM-VEANEQAFEELRVKTEQALEASRMKSEFLANMSHEIRTPMNGILGVIRLM 340
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
+ L R Y +T L+++IN+VLD +K+EA K + V F+LR ++ +V L
Sbjct: 341 QNQSLDGKMRRYVETVDASANTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAEL 400
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+ ++ KG+EL V +VP T +VG+ +F + V +L
Sbjct: 401 MASQAHEKGLELVYRVERRVP--------------TGVVGDPDRFRQ-----VLTNLVGN 441
Query: 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNA 587
+ TD + E L++ T + DK LI
Sbjct: 442 AIKFTD-RGEVLIDASTSQ------------------------QDKATALIK-------- 468
Query: 588 SIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647
+ V DTG GI Q+++F F Q D S R +GGTG+GL+I
Sbjct: 469 ------------------LAVVDTGPGIAPDDQKKLFAAFSQVDGSLVRKHGGTGLGLAI 510
Query: 648 SKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
SK LVE+M G++ S P GS F FT G V +Q +S + G + L VV
Sbjct: 511 SKRLVEVMGGEVGLDSTPGQGSRFWFTIRVG-----VTAGGEQIRSAEWASGRRAL--VV 563
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
+ + R V + HL G + ++S +DA + + + F ++ V+ D
Sbjct: 564 ENSRSWRDVVVE-HLVAWGFDAESAASGRDAINRLELAVLEKR-PFSAAVVGVQMD---- 617
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLIL--LATNISKDECDKAKAGGFADTVIMKPLRASM 825
D G L + + LP + L + ++++ D + T + KPLR S
Sbjct: 618 --DLGLEEFLRTIQSVPALQTLPVVALYHMGSSVTLSGMDSSMV-----TQLPKPLRVSE 670
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK-KILVVDDNGVNRMVAAGALKKFGA 884
+ LQ L+ A P+ G + K +LVVDDN +NR VA +++ G
Sbjct: 671 LYNTLQSALTG-----ASTPPPSKPGAEPGKIASKLPVLVVDDNEINRYVAMEQVEQLGL 725
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
VE A + + AL+ ++ + A MD QMP MDG+ AT+ IR E N
Sbjct: 726 RVETACNGQEALECVKRKR-YVAVLMDCQMPVMDGYTATQEIRAWERSRNR--------- 775
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
H I+A+TA + D L GMD Y++KP ++L + L
Sbjct: 776 ---------HTVIIALTAHALVGERDRVLAAGMDDYLAKPVRPQSLQKTL 816
>gi|414079219|ref|YP_007000643.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
gi|413972498|gb|AFW96586.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
Length = 1311
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 185/648 (28%), Positives = 297/648 (45%), Gaps = 133/648 (20%)
Query: 361 VEDDFHKMQELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+E + QEL++ AE+A AKS FLA +SHEIRTPMNG+LGM +LLL+T L+ Q+
Sbjct: 754 LESEIIHRQELEIARQEAESALQAKSSFLANMSHEIRTPMNGVLGMTSLLLETPLNPEQQ 813
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
D+ +T + G AL++LINE+LD +K+EA K+ LE + FNL + +V+ L + ++ +KG+
Sbjct: 814 DFLETVRTSGDALLSLINEILDLSKLEAGKMMLETLDFNLSTCIQEVIELLAPQAHDKGL 873
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
E+A + VP ++ GD R RQ+I NL+GN +KFT +G + V++ L T D+
Sbjct: 874 EIAALIPADVPIYIQGDASRLRQVIMNLMGNGIKFTSQGKVIVQLELISET-------DD 926
Query: 538 TLLNGGTEEGVCRSGTGQF---NTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMA 594
T T QF +T G+ D N + F Q +ASI
Sbjct: 927 T-------------ATIQFAIIDTGIGITTEDKNNLFQPFT--------QVDASITR--- 962
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
GG TG+G L+I + LV L
Sbjct: 963 KYGG------------TGLG------------------------------LAICQQLVTL 980
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVR 714
M G+I S GS F F F K E V S+++D + +VV+ +
Sbjct: 981 MGGKIGLNSEIGKGSKFWFNLSFTKQPESV------SQNQDYQI-LSQRRLLVVNNNTIS 1033
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGL----TSSEDKFQPDIILVEKDC-WISGE 769
+ + G+ + D +A GL T++ + DI +++ I G
Sbjct: 1034 REILHHQAISWGMHI-------DEVDSAIAGLAALETAATQQMPYDIAIIDMQMPEIDGL 1086
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
G + N + +P ++L TN +DE KA GF + ++KP++ + +
Sbjct: 1087 TLGIQI-----RKNPAIANVPLIMLTCTN-QRDEVKKALDIGFI-SYLVKPIKPTRLLDT 1139
Query: 830 LQQVLSTENKRQAGR-----GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
+ ++ +++K + +P S+ + L K+L+ +DN VN+ V L+ G
Sbjct: 1140 IMNIVGSQSKINNSQIAINEELPAISNKNTSKL---KLLLAEDNLVNQKVFLKQLQNLGY 1196
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ--MESKANEQMMNGGS 942
+ A+ + L+ L +D FMD QMP +DG AT+ IR+ + S Q
Sbjct: 1197 QADAVANGQEVLELLDKI-AYDLIFMDCQMPILDGLAATKEIRRRPLSSFPKHQ------ 1249
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
++A+TA+ + CL GMD Y+SKP ++ L
Sbjct: 1250 -----------QPVVIAITANAMKEDQKICLDAGMDDYLSKPVAKDKL 1286
>gi|410632756|ref|ZP_11343407.1| signal transduction histidine-protein kinase BarA [Glaciecola arctica
BSs20135]
gi|410147621|dbj|GAC20274.1| signal transduction histidine-protein kinase BarA [Glaciecola arctica
BSs20135]
Length = 1047
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 188/695 (27%), Positives = 316/695 (45%), Gaps = 146/695 (21%)
Query: 326 KASTPW---TALTTAFFLFVIGLLVGYILY--GAAIHIVKVEDDFHKMQELKVRAEAADV 380
K TPW TA TA + VGY + G A + D +++ + +A+ A
Sbjct: 470 KDGTPWDIQTAFITAKGNNIWVRSVGYAEFTNGVATSLRGAFQDITELKHAEEQAKEASR 529
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLA +SHEIRTP+NGILGM LLL+++L QR +AQ ++ +L+ LIN++LD
Sbjct: 530 AKSEFLANMSHEIRTPINGILGMNDLLLNSNLDENQRHFAQLVKMSSHSLLHLINDILDF 589
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIEA KL++E NL A+L D++ + ++++K +EL + ++ +P ++ DP R +Q
Sbjct: 590 SKIEAGKLDIEIQDINLYALLGDIIDSMAARAQDKHLELVLDIAPALPRWIKIDPYRVKQ 649
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQ-FNTL 559
++ NL+ N++KFTE+G + ++V ++K T+++ G EG+ Q F
Sbjct: 650 VLNNLLSNAIKFTEKGEVILRVESTSNELIKF-----TIIDTG--EGIAEDKQTQLFTQF 702
Query: 560 SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
+++++ R +GG TG+G+ +S
Sbjct: 703 MQVDSSNTR--------------------------QHGG------------TGLGLAISK 724
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
Q L E M GQIS S Q GSTF FT
Sbjct: 725 Q------------------------------LTERMGGQISVQSVWQQGSTFCFTVK--- 751
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGL-------KAVVVD-EKPVRAAVTQYHLNRLGIMVKM 731
+ S+ PP + + K +VVD VR +V L I+ +
Sbjct: 752 ---------SEPSSQSTPPTTQAMLAPLRLKKLLVVDSHNSVRQSV-------LNILTQG 795
Query: 732 SSSIKDASST--AKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
+ AS+ A L + D Q D IL+E + G D ++ + + + K
Sbjct: 796 EIEVVGASNAPEAIKALRHAYDSQQSFDYILIE--LALLGMDGIELSKAI--RADKRFSK 851
Query: 789 LPKLILLA--TNISKDECDKAKAGGFADTVIMKPLRASMIAACL---QQVLSTENKRQAG 843
L +++ A ++ + + K G+ + KP + + + L Q + +R+
Sbjct: 852 LEIILMTAQVAAVNNSQPPEIKISGY----LGKPFKPDSLISVLIKPQYTQAPVRQRELR 907
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
+ P + H + IL+V+DN +N+ + LK A + + AL+ L + +
Sbjct: 908 KANPLETPAH----KKPNILIVEDNYINQQIVIEMLKSLDCDYHLAGNGQEALNMLSNHN 963
Query: 904 -CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
FD MD QMP M+G++ATR IR E + ++ ++PI+A+TA
Sbjct: 964 GSFDLILMDCQMPLMNGYDATRHIRATEHQQFDK-----------------NIPIIALTA 1006
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ + +C + GM+ Y+SKPF E L L K+
Sbjct: 1007 NAMKGDDIKCFEAGMNDYLSKPFLSEQLAEILHKW 1041
>gi|239787643|emb|CAX84111.1| Sensor protein [uncultured bacterium]
Length = 1221
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 191/628 (30%), Positives = 299/628 (47%), Gaps = 113/628 (17%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE + KSQFLA +SHEIRTP+N ++GM LL T L+ Q+DY A +L+ LI
Sbjct: 467 AEESSRTKSQFLANMSHEIRTPINAVMGMHYLLQQTLLTDQQQDYLDKADNGAHSLLGLI 526
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KLE+EA+ F L +L+++ + S +R K IEL + + VP+
Sbjct: 527 NDILDFSKIEAGKLEIEAIDFQLSDMLENLADITSGITRKKNIELVITIPPDVPD----- 581
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
+LVG+ + G I + +V AK T EG+
Sbjct: 582 ---------HLVGDPTRL---GQILLN-------LVSNAAK-------FTAEGMV----- 610
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
L+ GF + + V L V DTGIG
Sbjct: 611 ----------------------LVSVTGFTALPD-----------DQVELRFAVRDTGIG 637
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ ++F F QADSST R +GGTG+GL+ISK LVE M G I S GS F+FT
Sbjct: 638 MTPEQLGKLFQAFTQADSSTVRKFGGTGLGLTISKQLVEKMGGAIEATSMAGEGSEFTFT 697
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
A G+ ++ +++ +P G +A++VD+ + V + + G+ V +
Sbjct: 698 ARLGRGED--------TRAFVVPVDRLTGRRALIVDDLALSCDVLRDVMTNFGLSV---T 746
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL-DWKPNGHVFKLPKL 792
++K + A LT++ F D++L++ W G A+L+ + + N V +P L
Sbjct: 747 TVKSGQA-ALAELTTTASPF--DVVLLD---WHMPGMGG--AELIRNIRGNPQVASVP-L 797
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF 852
+L+ T ++E D +++KP+ S++ + L +R+ RG S
Sbjct: 798 VLMVTPFGQEEALDGMRDLELDGLLVKPILPSVLLESILGALGL-GERKKRRGKGRKQSG 856
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-HCFDACFMD 911
Q L+G+ IL+ +DN +N+ +A L GA V AA AAL ++S FD MD
Sbjct: 857 PQNRLQGRHILLAEDNEINQEIAQAILSGEGAAVRIAADGVAALSAVESSDRPFDVVLMD 916
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
I MP MDG+EAT RIR + + A+ LPI+AMTA + ++
Sbjct: 917 IHMPVMDGYEATSRIRAIPAHAD--------------------LPIIAMTASAMVEEREK 956
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFFK 999
CL GM+ +++KP + + L ++ +
Sbjct: 957 CLAVGMNDHIAKPIDVGQMLSTLDQWMR 984
>gi|345869886|ref|ZP_08821842.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
gi|343922748|gb|EGV33447.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
Length = 779
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 184/645 (28%), Positives = 271/645 (42%), Gaps = 148/645 (22%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEA +AKSQFLA++SHEIRTPMNGI+GM LL T L QR + +T Q+ ++L+ +I
Sbjct: 263 AEAGSLAKSQFLASMSHEIRTPMNGIIGMAELLWGTQLDERQRHFVRTVQVSAESLLGII 322
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
++VLD +KIEA +LELE V F+L A++ L SE +R KG+EL +S V+GD
Sbjct: 323 SDVLDFSKIEAGRLELEHVEFDLHALMGRTSDLLSETARRKGLELMTRISPHCSSRVMGD 382
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
PGR RQI+ NLV N+VKFTE G++ + + E T E R
Sbjct: 383 PGRLRQILMNLVSNAVKFTETGYVQLSLSCLEET-----------------EHEVRVRIA 425
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
+T GL + +D+F Q+++S GG TG+G
Sbjct: 426 VRDTGIGLSPEEQSRIFDRFS--------QADSSTSR---RYGG------------TGLG 462
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ ++ Q LV+LM G ++ S P GS F
Sbjct: 463 LAITKQ------------------------------LVDLMHGTLTLDSLPGHGSVFQIE 492
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
K D +GL+ +++D +A LGI V+
Sbjct: 493 LTLSKAS---------PGWSDQTLNLEGLRVLLIDGDREGSARLIDDCATLGIEVQQVPD 543
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLIL 794
+ +A A ++ +GF+ +LD +LP L L
Sbjct: 544 LGEAMELALT---------------------LAAGGNGFSLFVLD------AAQLPSLDL 576
Query: 795 LATNISKDECDK--------------AKAGGFAD-TVIMKPLRASMIAACLQQVLS---- 835
+ +D D+ AK G+ +MKP+ +A L ++
Sbjct: 577 PVGRVLRDLVDQAMGAVLLCEHRSAGAKPSGWDGLECLMKPVECQALARALGVIIHGSPL 636
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
E+K P G GL ++LV +DN VN+ V L G A +A
Sbjct: 637 GEDKAFPELDRPGGEQPSLGL----RVLVAEDNPVNQDVIESMLNALGCKAVLCADGQAL 692
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L +L +D MD QMP MDG+E TRR+R E E +L
Sbjct: 693 LAELARSD-YDLVLMDCQMPLMDGYETTRRLRSREQARGE------------------YL 733
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
P++A+TA + + L GMD Y+ KPF+ +L L ++ S
Sbjct: 734 PVIALTAYAMEGDRERALAAGMDDYLVKPFKLADLAEVLRRWTVS 778
>gi|319781102|ref|YP_004140578.1| ATPase domain-containing protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 779
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 194/717 (27%), Positives = 311/717 (43%), Gaps = 162/717 (22%)
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ AS+ L + LF +V + ++ V + F + E +AEAAD A
Sbjct: 176 RHLADASSDRLLLWASGILFAALAIVAFWIFRP--MEVAIRRAFAESAESLFKAEAADRA 233
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLA +SHEIRTPMNG+LGM LL TDL+ Q+ + G AL+ +IN++LD +
Sbjct: 234 KSEFLANMSHEIRTPMNGVLGMAELLAKTDLTPRQKTFTDVIVKSGNALLTIINDILDFS 293
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KI A +L L+ F L ++DV +L S + K +EL V V ++P V+GD GRFRQI
Sbjct: 294 KINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLELIVRVDPRLPAHVVGDAGRFRQI 353
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
ITNL+GN+VKFTE+GH+ + V G V + +T G
Sbjct: 354 ITNLLGNAVKFTEKGHVLIDV------------------GGEIVNDVVQLKIRVEDTGIG 395
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
+ A +N ++KF +D + + E TG+G+ ++A+
Sbjct: 396 IPAEKLQNVFEKFAQ-VDGSSTRRH----------------------EGTGLGLAIAAR- 431
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
LV+LM G+I S GS F F +
Sbjct: 432 -----------------------------LVDLMAGKIGVESEIGRGSVFWFAVPLPAHQ 462
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD--AS 739
++ E +P G + +V+D+ PV NR ++ ++ S D A+
Sbjct: 463 -------AAARDEIVPVDVTGARVLVIDDNPV---------NREILLEQLRSWSFDCAAA 506
Query: 740 STAKNGLTSSEDKFQ----PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILL 795
+ GL + FQ D I++ D + G + A+ + + + +P ++L
Sbjct: 507 ESGAVGLAFLDRAFQLGAAVDCIIL--DYQMPGMNGADVARAI--ASDSRLSSIPVVLL- 561
Query: 796 ATNISKDECDKAKA---GGFADTVIMKPLRASM----IAACLQQVLSTENKRQAGR---- 844
S D+ D K G A + KP R+++ + + +Q+ S K Q R
Sbjct: 562 ---TSVDQVDFGKMIIDFGIA-AHLTKPARSAVLLGTVISVVQKARSQVGKAQFVREPIV 617
Query: 845 ---------------------GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG 883
P ++ G + IL+ +DN VN++V L G
Sbjct: 618 QAPPAAPPAFTVIRGPALPVAAAPESTTTPNGPI---DILIAEDNDVNQLVFGQILNGLG 674
Query: 884 ATVECAASAKAALDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
+ A + + A++ ++ P MD+ MPEM+G+EATR IR ME+
Sbjct: 675 LSYRIAGNGRTAVEMYRALRPKLI---LMDVSMPEMNGYEATRAIRAMETST-------- 723
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
GT H+PI+ +TA + D+C++ GMD Y+ KP + L ++ +
Sbjct: 724 ----GT------HIPIIGVTAHALKGDRDKCIESGMDDYLPKPVSPDRLGTKIGTWL 770
>gi|386817643|ref|ZP_10104861.1| integral membrane sensor hybrid histidine kinase [Thiothrix nivea DSM
5205]
gi|386422219|gb|EIJ36054.1| integral membrane sensor hybrid histidine kinase [Thiothrix nivea DSM
5205]
Length = 769
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 193/669 (28%), Positives = 292/669 (43%), Gaps = 129/669 (19%)
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
L + GLLV + + + K Q + AE A K++FLAT+SHEIRTPMNG
Sbjct: 218 LLIAGLLVSRFYFSGNFKQLIL-----KAQHAQAVAEDAVKTKARFLATMSHEIRTPMNG 272
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
++GM LL++T ++ Q ++ ++ + G+ L+ +IN+VLD +KIEA KL+L+ LRA
Sbjct: 273 VIGMTRLLMNTPMNKKQLEFVESIHLSGEHLLTVINDVLDFSKIEAGKLDLKHEPLELRA 332
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
++DVL+L + K+ K +ELA V +P F+ GD R RQI+TNL+GN++KFT+ G I
Sbjct: 333 CIEDVLNLLTSKALEKNLELAYAVGPTIPLFIEGDVVRLRQILTNLIGNAIKFTDSGEIT 392
Query: 520 VKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLID 579
V V M ++ DE L E + +G+G I
Sbjct: 393 VFV------MPRSHHGDEYEL----EFQINDTGSG-----------------------IP 419
Query: 580 AEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYG 639
E +S + D L E TG+G+ +S R + M R +
Sbjct: 420 EERLES-------IFEQFSQADNALTRRGEGTGLGLAIS---RRLVEMMDG-----RIWA 464
Query: 640 GTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG 699
+ +G+ + F R + G GK K ++ DI P
Sbjct: 465 ESTLGVG----------SRFHFTIRARKGE--------GKLKPFLHPDI---------PE 497
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIIL 759
G + ++V+ P + G V+ + +A + +G F DI L
Sbjct: 498 IVGKRILIVENNPANHQALRDFCTGWGATVRAYCTSSEAIAAIASG-----HAF--DIGL 550
Query: 760 VEKDCWISGEDSGFNAQLLDW------KPNGHVFKLPKLILLATNISKDECDKAKAGGFA 813
V+ + NA LD+ + + H F LIL+A D K
Sbjct: 551 VDSNL--------PNASALDFGKYVRTRYSKHEF---PLILIAP--PNDAHPKESVREIF 597
Query: 814 DTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRM 873
+ + KP+ S + L V+ N A P S G IL+ +DN +N++
Sbjct: 598 NLYLSKPITRSRLFDSLMTVMGELNLVTAR---PEQSRLKLGERLPLAILLAEDNPINQI 654
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
VAA L + E A + AL+ L+ FD FMD+QMPEMDG EATRRIR A
Sbjct: 655 VAASILDEMAYKAEIAENGLQALEALRK-KPFDVIFMDMQMPEMDGLEATRRIRAEFPPA 713
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
+ + I+AMTA+ + +CL GM+ Y+SKP E +
Sbjct: 714 RQPV-------------------IIAMTANAMEGDRQQCLNAGMNDYISKPILPEAIETA 754
Query: 994 LAKFFKSKP 1002
L + S P
Sbjct: 755 LQRSLPSLP 763
>gi|357023991|ref|ZP_09086157.1| two-component sensor/response regulator hybrid [Mesorhizobium
amorphae CCNWGS0123]
gi|355544082|gb|EHH13192.1| two-component sensor/response regulator hybrid [Mesorhizobium
amorphae CCNWGS0123]
Length = 763
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 184/631 (29%), Positives = 277/631 (43%), Gaps = 138/631 (21%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
RAE A AKS+FLATVSHEIRTPMNGI+GM LL+DTDLS QR Y AL+AL
Sbjct: 247 RAEYASQAKSRFLATVSHEIRTPMNGIMGMAKLLVDTDLSPEQRTYVGAVSTSASALLAL 306
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
I ++LD +KIEA + + E +LR I D+++ L + ++ K I L V VP+ +
Sbjct: 307 IEDLLDYSKIEAGRFDPEPQPTSLREIADNIIELMAARAFGKNIGLGCHVELDVPQMITA 366
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DPGR RQ++ NL+GN++KFT+ G + V V A +T+ D +C + T
Sbjct: 367 DPGRVRQVLLNLIGNAIKFTDTGGVLVSVARA-----RTETTDR----------ICFTVT 411
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+T GL D +++F+ S+G S V
Sbjct: 412 ---DTGPGLREEDMERIFEEFEQ------------------SDGTSTRV----------- 439
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
H G G+GL+IS+ L + M G IS SR
Sbjct: 440 -----------------------HGG-AGLGLAISRRLAKAMGGSISVSSR--------- 466
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPG-----FKGLKAVVVDEKPVRAAVTQYHLNRLGIM 728
G+ E+VFE + +E PP G +AV+V + + A + G
Sbjct: 467 ---LGEGSEFVFELPATAATE--PPQNRQSILAGRRAVIVSKNAIEADAIARTIRAHGGA 521
Query: 729 VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
V +++++ A+ A D++LV D + D +L + NG F
Sbjct: 522 VDLATTLAQATPFAAGC----------DVLLV--DAAMENSDGRLLKRL---RQNG--FA 564
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN------KRQA 842
+ I L + + +A G+A T + +P+R L +VL T + +
Sbjct: 565 DCEAITLIAPTDRGMLGEFRANGYA-TFLARPVRGE----TLLRVLLTSHAPVLPQPKSD 619
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
G P + G +L+ +DN +N M+A L K G V+ + KAA++ +
Sbjct: 620 KHGAPPVRAGAGRREHGLSVLIAEDNDINAMLARATLLKAGHRVKVVGNGKAAVEAITDA 679
Query: 903 ---HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
H FD MD+ MP MDG +A IR+ E E+M +PI+
Sbjct: 680 GLKHRFDVVLMDLHMPVMDGLDAIAAIRRHE----EEMAVP-------------PVPIMV 722
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENL 990
++AD T L G G+V+KP + + L
Sbjct: 723 LSADSQEKTRHAVLAHGASGFVTKPLDPDAL 753
>gi|429207504|ref|ZP_19198763.1| Sensor histidine kinase/response regulator [Rhodobacter sp. AKP1]
gi|428189879|gb|EKX58432.1| Sensor histidine kinase/response regulator [Rhodobacter sp. AKP1]
Length = 849
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 177/630 (28%), Positives = 280/630 (44%), Gaps = 136/630 (21%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMNGI+GM LL +T L+ QR +++T + G+AL+ +IN++LD +KIE
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVLTEDQRLFSETIRSSGEALLVIINDILDYSKIE 401
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A +L L F+L + +V L K+R KGI+L + +P +GDPGR RQ++TN
Sbjct: 402 ANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTN 461
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
L+GN+VKFT GH+ ++V GLE
Sbjct: 462 LIGNAVKFTAAGHVLIRV-------------------------------------VGLEV 484
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
A GR+ L V VEDTGIGI + VF
Sbjct: 485 APGRHD---------------------------------LRVTVEDTGIGIAPEHLDHVF 511
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F Q ++ +R + GTG+GL+I++ L+ELM+G + S P GS F F
Sbjct: 512 GEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLT-------- 563
Query: 685 FEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
+ + E PP + +A+VVD + + + + L GI V + S +A +
Sbjct: 564 ---LPAADDEAAPPVPIEVRRALVVDGQFINRTILERQLAPCGIAVTLCRSGIEALAE-- 618
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS--K 801
S++ + D++L + E + L + F +P ++LL +N S +
Sbjct: 619 ---LSADAGY--DLLLTDH------EMPDLDGLALAQRVRAGGFSMP-ILLLTSNPSAVR 666
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
D +A G V+ KPL S + LQ + + LR +
Sbjct: 667 DHPAEALLAG----VLQKPLLRSDLYRRLQSLTAPAAAPDR------PPPVPVPALRRMR 716
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL---DKLQSPHCFDACFMDIQMPEMD 918
+L +DN N++V ++ + A + + A+ D+++ D FMDI MPEMD
Sbjct: 717 VLAAEDNRTNQLVFGKMVRDLDIDLTFADNGREAVELYDRIRP----DLVFMDISMPEMD 772
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + ++A GG+ H+PI+A+TA + + G+D
Sbjct: 773 G--------RAAARAIRARERGGA-----------HVPIVALTAHALESDARASAAAGID 813
Query: 979 GYVSKPFEEENLYRELAKFFK--SKPLSGA 1006
++KP + LA F ++P+ A
Sbjct: 814 RTLTKPLRRAMILETLAAFCPAGTRPIQPA 843
>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1179
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 180/628 (28%), Positives = 280/628 (44%), Gaps = 130/628 (20%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AEAA AK FLAT+SHEIRTPMNGI+GM L LDT++S+ QR+Y + AL+
Sbjct: 548 KESAEAASRAKGDFLATMSHEIRTPMNGIIGMTELALDTEMSAEQREYLNMVKSSADALL 607
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIE+ K+ELE+V F++R + + ++ KG+EL V +P+ +
Sbjct: 608 TIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAAQKGLELVYDVDGAIPDLL 667
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDPGR RQ++TNL+GN++KF+E G I +++ L + T +G+C
Sbjct: 668 VGDPGRLRQVLTNLLGNAIKFSEHGAITLRMKLLMQ----------------TSDGLCVR 711
Query: 552 GTGQFNTLSGLEAADGRNSW--DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609
+E AD DK H+ +A Q++ S GG
Sbjct: 712 ----------IEVADQGIGIPVDKLAHIFEA-FTQADTSTTR---KYGG----------- 746
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
TG+G+ +S++ LV M G +S S+ +GS
Sbjct: 747 -TGLGLAISSK------------------------------LVAAMGGDLSVESQVGIGS 775
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F FT SE L A++VD+ + + + G
Sbjct: 776 VFGFTTTLPVA--------LNQPSEISCESLVNLSALIVDDNATNCKLLSQQIKKWG--- 824
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS-GFNAQL--LDWKPNGH 785
M ++ ++S L ++ + P D++L+ D +S D F AQL + KP
Sbjct: 825 -MRPTVAGSASEGMAMLREAQQEQAPFDLLLL--DAVLSDADGFDFAAQLQSMPQKPRAL 881
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
V L L A + ++ + G ++ + KP+ + ++ L + +
Sbjct: 882 VMMLSSASLRA------DAERCRQAGISN-YLSKPIDRWELIKTIKAALGLQVDDVFVQT 934
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
P S+ IL+ +DN VN+ +A L K+G V A + A++ F
Sbjct: 935 APLASA------HSLNILLAEDNRVNQKLAITLLGKWGHRVVLANNGIEAVEHAGRVD-F 987
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL---HLPILAMTA 962
D MD+QMPEM G EATR IR+ +D+L H I+AMTA
Sbjct: 988 DVILMDLQMPEMSGMEATRLIRE---------------------QDQLRGRHSRIVAMTA 1026
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENL 990
+ + CL GMD Y++KP E L
Sbjct: 1027 NAMSEDRQRCLDAGMDDYIAKPLNTEKL 1054
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 33/157 (21%)
Query: 863 LVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL----QSPHCFDACFMDIQMPEMD 918
L+VDDN N + + +KK+G A SA + L Q FD +D + + D
Sbjct: 804 LIVDDNATNCKLLSQQIKKWGMRPTVAGSASEGMAMLREAQQEQAPFDLLLLDAVLSDAD 863
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
GF+ +++ M K +M +++ + A + C + G+
Sbjct: 864 GFDFAAQLQSMPQKPRALVM--------------------MLSSASLRADAERCRQAGIS 903
Query: 979 GYVSKPFEEENLYRELAK---------FFKSKPLSGA 1006
Y+SKP + L + + F ++ PL+ A
Sbjct: 904 NYLSKPIDRWELIKTIKAALGLQVDDVFVQTAPLASA 940
>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
Length = 1205
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 180/670 (26%), Positives = 305/670 (45%), Gaps = 112/670 (16%)
Query: 337 AFFLFVIGLL----VGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHE 392
+F+L + G++ + +I+ A +E K+ + A+ A+ AKS FLA +SHE
Sbjct: 432 SFYLAIGGIIFMSTIVFIVLLANKSHAALEKSADKLAIARDEADYANQAKSDFLANMSHE 491
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMN I+GM L L TDL+ QR+Y Q ++ L+ LIN++LD +KIEA KL++E
Sbjct: 492 IRTPMNAIIGMSYLALKTDLTKAQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEH 551
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
V F L +LD++ +L K+ +G+EL + S VP + GDP R QI+TNL N+VKF
Sbjct: 552 VDFRLENVLDNISNLVGLKASEQGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKF 611
Query: 513 TERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWD 572
TE+G + + + T + D TL ++ G+ G+ + ++
Sbjct: 612 TEQGEVKITI-----TADNLENDDVTLRFAVSDTGI------------GMTPEQTQKLFN 654
Query: 573 KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632
KF Q+++S GG TG+G+ +S
Sbjct: 655 KFT--------QADSSTTRKY---GG------------TGLGLAIS-------------- 677
Query: 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSK 692
K L LM G I S+ GSTF FT + + + ++K
Sbjct: 678 ----------------KELCLLMGGDIEVRSQFGEGSTFEFTINMKRSQ------VLETK 715
Query: 693 SEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDK 752
+P L ++VD+ + + L L V+ ++ + D++ A N S+
Sbjct: 716 PIVVPTSLNHLNILIVDDNASARLIVEDILQSLNFSVRSANGV-DSAIDALNHAAQSDSA 774
Query: 753 FQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGF 812
F D+++ D + G+D +L+ PK+++L + D + G
Sbjct: 775 F--DVVIT--DWQMPGKDG---VELIHAIQQSESLN-PKILMLTAYDRQLLADSVQERGL 826
Query: 813 -ADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF-HQGLLRGKKILVVDDNGV 870
+++ KP+ AS + + + EN R + + + + L G +L+V+DN +
Sbjct: 827 IVPSILDKPVTASHLFDAIVGLYDIENHRTSRDELEQQTHLANVQHLAGAHLLLVEDNEI 886
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N+ +A L+ V A + + A+D L FD MD QMP +DG+ AT IR
Sbjct: 887 NQELAVELLESQNIQVTVAQNGQVAID-LYKQMTFDGILMDCQMPVLDGYSATEIIR--- 942
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
++++ A +PI+AMTADV+ + + GM+ ++KP + +
Sbjct: 943 -----------NTLNDRA------IPIIAMTADVMERDRERAYQSGMNDIIAKPIDVGIM 985
Query: 991 YRELAKFFKS 1000
+ LA++ S
Sbjct: 986 FSTLARWITS 995
>gi|221640855|ref|YP_002527117.1| sensor protein [Rhodobacter sphaeroides KD131]
gi|221161636|gb|ACM02616.1| Sensor protein [Rhodobacter sphaeroides KD131]
Length = 849
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 177/630 (28%), Positives = 280/630 (44%), Gaps = 136/630 (21%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMNGI+GM LL +T L+ QR +++T + G+AL+ +IN++LD +KIE
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVLTEDQRLFSETIRSSGEALLVIINDILDYSKIE 401
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A +L L F+L + +V L K+R KGI+L + +P +GDPGR RQ++TN
Sbjct: 402 ANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTN 461
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
L+GN+VKFT GH+ ++V GLE
Sbjct: 462 LIGNAVKFTAAGHVLIRV-------------------------------------VGLEV 484
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
A GR+ L V VEDTGIGI + VF
Sbjct: 485 APGRHD---------------------------------LRVTVEDTGIGIAPEHLDHVF 511
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F Q ++ +R + GTG+GL+I++ L+ELM+G + S P GS F F
Sbjct: 512 GEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLT-------- 563
Query: 685 FEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
+ + E PP + +A+VVD + + + + L GI V + S +A +
Sbjct: 564 ---LPAADDEAAPPVPIEVRRALVVDGQFINRTILERQLAPCGIAVTLCRSGIEALAE-- 618
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS--K 801
S++ + D++L + E + L + F +P ++LL +N S +
Sbjct: 619 ---LSADAGY--DLLLTDH------EMPDLDGLALAQRVRAGGFSMP-ILLLTSNPSAVR 666
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
D +A G V+ KPL S + LQ + + LR +
Sbjct: 667 DHPAEALLAG----VLQKPLLRSDLYRRLQSLTAPPAAPDR------PPPVPVPALRRMR 716
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL---DKLQSPHCFDACFMDIQMPEMD 918
+L +DN N++V ++ + A + + A+ D+++ D FMDI MPEMD
Sbjct: 717 VLAAEDNRTNQLVFGKMVRDLDIDLTFADNGREAVELYDRIRP----DLVFMDISMPEMD 772
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + ++A GG+ H+PI+A+TA + + G+D
Sbjct: 773 G--------RAAARAIRARERGGA-----------HVPIVALTAHALESDARASAAAGID 813
Query: 979 GYVSKPFEEENLYRELAKFFK--SKPLSGA 1006
++KP + LA F ++P+ A
Sbjct: 814 RTLTKPLRRAMILETLAAFCPAGTRPIQPA 843
>gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
2.4.1]
gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
2.4.1]
Length = 849
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 177/630 (28%), Positives = 280/630 (44%), Gaps = 136/630 (21%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMNGI+GM LL +T L+ QR +++T + G+AL+ +IN++LD +KIE
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVLTEDQRLFSETIRSSGEALLVIINDILDYSKIE 401
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A +L L F+L + +V L K+R KGI+L + +P +GDPGR RQ++TN
Sbjct: 402 ANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTN 461
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
L+GN+VKFT GH+ ++V GLE
Sbjct: 462 LIGNAVKFTAAGHVLIRV-------------------------------------VGLEV 484
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
A GR+ L V VEDTGIGI + VF
Sbjct: 485 APGRHD---------------------------------LRVTVEDTGIGIAPEHLDHVF 511
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F Q ++ +R + GTG+GL+I++ L+ELM+G + S P GS F F
Sbjct: 512 GEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLT-------- 563
Query: 685 FEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
+ + E PP + +A+VVD + + + + L GI V + S +A +
Sbjct: 564 ---LPAADDEAAPPVPIEVRRALVVDGQFINRTILERQLAPCGISVTLCRSGIEALAE-- 618
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS--K 801
S++ + D++L + E + L + F +P ++LL +N S +
Sbjct: 619 ---LSADAGY--DLLLTDH------EMPDLDGLALAQRVRAGGFSMP-ILLLTSNPSAVR 666
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
D +A G V+ KPL S + LQ + + LR +
Sbjct: 667 DHPAEALLAG----VLQKPLLRSDLYRRLQSLTAPPAAPDR------PPPVPVPALRRMR 716
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL---DKLQSPHCFDACFMDIQMPEMD 918
+L +DN N++V ++ + A + + A+ D+++ D FMDI MPEMD
Sbjct: 717 VLAAEDNRTNQLVFGKMVRDLDIDLTFADNGREAVELYDRIRP----DLVFMDISMPEMD 772
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + ++A GG+ H+PI+A+TA + + G+D
Sbjct: 773 G--------RAAARAIRARERGGT-----------HVPIVALTAHALESDARASAAAGID 813
Query: 979 GYVSKPFEEENLYRELAKFFK--SKPLSGA 1006
++KP + LA F ++P+ A
Sbjct: 814 RTLTKPLRRAMILETLAAFCPAGTRPIQPA 843
>gi|332559833|ref|ZP_08414155.1| histidine kinase [Rhodobacter sphaeroides WS8N]
gi|332277545|gb|EGJ22860.1| histidine kinase [Rhodobacter sphaeroides WS8N]
Length = 849
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 177/630 (28%), Positives = 280/630 (44%), Gaps = 136/630 (21%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMNGI+GM LL +T L+ QR +++T + G+AL+ +IN++LD +KIE
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVLTEDQRLFSETIRSSGEALLVIINDILDYSKIE 401
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A +L L F+L + +V L K+R KGI+L + +P +GDPGR RQ++TN
Sbjct: 402 ANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTN 461
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
L+GN+VKFT GH+ ++V GLE
Sbjct: 462 LIGNAVKFTAAGHVLIRV-------------------------------------VGLEV 484
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
A GR+ L V VEDTGIGI + VF
Sbjct: 485 APGRHD---------------------------------LRVTVEDTGIGIAPEHLDHVF 511
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F Q ++ +R + GTG+GL+I++ L+ELM+G + S P GS F F
Sbjct: 512 GEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLT-------- 563
Query: 685 FEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
+ + E PP + +A+VVD + + + + L GI V + S +A +
Sbjct: 564 ---LPAADDEAAPPVPIEVRRALVVDGQFINRTILERQLAPCGIAVTLCRSGIEALAE-- 618
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS--K 801
S++ + D++L + E + L + F +P ++LL +N S +
Sbjct: 619 ---LSADAGY--DLLLTDH------EMPDLDGLALAQRVRAGGFSMP-ILLLTSNPSAVR 666
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
D +A G V+ KPL S + LQ + + LR +
Sbjct: 667 DHPAEALLAG----VLQKPLLRSDLYRRLQSLTAPPAAPDR------PPPVPVPALRRMR 716
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL---DKLQSPHCFDACFMDIQMPEMD 918
+L +DN N++V ++ + A + + A+ D+++ D FMDI MPEMD
Sbjct: 717 VLAAEDNRTNQLVFGKMVRDLDIELTFADNGREAVELYDRIRP----DLVFMDISMPEMD 772
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + ++A GG+ H+PI+A+TA + + G+D
Sbjct: 773 G--------RAAARAIRARERGGA-----------HVPIVALTAHALESDARASAAAGID 813
Query: 979 GYVSKPFEEENLYRELAKFFK--SKPLSGA 1006
++KP + LA F ++P+ A
Sbjct: 814 RTLTKPLRRAMILETLAAFCPAGTRPIQPA 843
>gi|218887540|ref|YP_002436861.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758494|gb|ACL09393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1177
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 193/376 (51%), Gaps = 49/376 (13%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ R E A AKS+FLA V+HE+RTPMN ++GM+ + L TDL+ QR+Y + ++L+
Sbjct: 259 QARVERASRAKSEFLAGVTHELRTPMNAVIGMVDITLGTDLAPKQREYLNLVRSSARSLL 318
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++N VLD +K+EA +L LEA+ F R +L++V LF ++ K IEL V + VP +
Sbjct: 319 GVVNGVLDFSKLEAGRLALEAIPFRTRDLLEEVTDLFHDRLAIKDIELVVDIDTGVPPVL 378
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R RQ++ NL N+ KFTERG + ++V A+ T+A +
Sbjct: 379 VGDPLRLRQVLVNLAANAFKFTERGEVVIRVGRAD-----TEAN---------------A 418
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
G G N ADG +++ NG V L V DT
Sbjct: 419 GAGAENIPEA--PADG----------------TTDSPQTGGAHGNG----VELAFSVRDT 456
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
GIGI A+ER+F + QAD S SR +GGTG+GLSI + LV LM G + S P GSTF
Sbjct: 457 GIGIAPEARERLFESYSQADVSVSRRFGGTGLGLSIVRALVHLMGGDVGVDSEPGRGSTF 516
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FTA FG +E + G +A+V + P A V L +LG+ ++
Sbjct: 517 RFTARFGLPQEQEAPAPPPPQ-------LAGRQALVAEANPACARVLARLLAQLGVRCQV 569
Query: 732 SSSIKDASSTAKNGLT 747
+ + + +G T
Sbjct: 570 APDVAALRTALHHGPT 585
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 84/220 (38%), Gaps = 59/220 (26%)
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
QVL + + + R P G Q + LRG ++L+VDDN +NR VA L G VE
Sbjct: 780 QVLRDQARPDSSRPDPVGPDPAQPVPDLRGTRVLLVDDNPINRAVATEMLHAAGVEVEAV 839
Query: 890 ASAKAALDKL---------QSPH----------------------------------CFD 906
S + ALD L S H FD
Sbjct: 840 PSGETALDTLARSVRPAYGPSEHGEPGEPDRPDGPDGPDGPDRPDGAIVRKTDTQNVAFD 899
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
A +DIQMP MDG++ IR + ++ G P++A TA V
Sbjct: 900 AVLLDIQMPGMDGYQTAAAIRARNASGGLRLRPGA--------------PVIAFTARVEG 945
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
+ + G+ G + KP + + L L + + P++ A
Sbjct: 946 EDEEALHRAGIVGRLPKPVDRQELLATLHRHLPAGPVANA 985
>gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma
proteobacterium HTCC2148]
gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma
proteobacterium HTCC2148]
Length = 1484
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 181/643 (28%), Positives = 285/643 (44%), Gaps = 133/643 (20%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KV++ ++Q+ + AE+A+ AKS FLAT+SHEIRTPM+G++GM LLL TDLS Q+ +
Sbjct: 831 KVQERTRELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHTDLSEQQKQF 890
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+ A G++L++LINE+LD +KIEA K+ELE + F+L ++D++ L E + KG+ L
Sbjct: 891 ARAAHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGLAL 950
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
P+ +LGDP + RQ++ NLV N++KFT G+I V V +++D+
Sbjct: 951 NSIFDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHTGNIDVCV-------TYKNSEDDRN 1003
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
N T + TG G++AA ++ F Q++ S GG
Sbjct: 1004 KNDVT---ISVKDTG-----IGMDAATQNRVFEVFT--------QADTSTTREY---GG- 1043
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TG+G+ S S+HY +ELM G I
Sbjct: 1044 -----------TGLGL-----------------SISKHY-------------IELMNGTI 1062
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+ S+P +G+ S T F + + + +D P R A+T
Sbjct: 1063 AIESQPNIGTDLSVTVPFSVVQP---------------------QTIKID--PNRQAITI 1099
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ M+ S+ + A+ L +++ P++++++ D S N ++L
Sbjct: 1100 CSNESVTKMINSHLSLLGWRAEAEKNLNATK---IPELVVIDADALDS------NPEILS 1150
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
N V LL +I++ D I KP+ + + + L+ + +
Sbjct: 1151 TIRNSDVTHG----LLVCSINQSRLDSVFDNW---QRISKPVTRDSLETAITKHLAQKPR 1203
Query: 840 RQAGRGVPNGSSFHQGLLRGKK--ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+ P SS G + ILV +D NR + L G VE + K A +
Sbjct: 1204 K------PQFSSIEHDEDSGPRLNILVAEDVETNRKIIKEMLAILGHNVEVVINGKQAFE 1257
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
K+ +D FMD QMP MDGFEAT IR +E R PI
Sbjct: 1258 KV-GHQSYDLIFMDCQMPIMDGFEATENIRNLEK-----------------TRGRNATPI 1299
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+A+TA + C GM+ YV KPF ++ + KS
Sbjct: 1300 IALTAGLDKKDRQRCETSGMNHYVGKPFSISDIREAIEPILKS 1342
>gi|126460803|ref|YP_001041917.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
gi|126102467|gb|ABN75145.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
Length = 849
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 179/630 (28%), Positives = 281/630 (44%), Gaps = 136/630 (21%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMNGI+GM LL +T L+ QR +++T + G+AL+ +IN++LD +KIE
Sbjct: 342 FLANMSHEIRTPMNGIVGMADLLCETVLTEDQRLFSETIRSSGEALLVIINDILDYSKIE 401
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A +L L F+L + +V L K+R KGI+L + +P +GDPGR RQ++TN
Sbjct: 402 ANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTN 461
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
L+GN+VKFT GH+ ++V GLE
Sbjct: 462 LIGNAVKFTAAGHVLIRV-------------------------------------VGLEV 484
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
A GR+ L V VEDTGIGI + VF
Sbjct: 485 APGRHD---------------------------------LRVTVEDTGIGIAPEHLDHVF 511
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F Q ++ +R + GTG+GL+I++ L+ELM+G + S P GS F F
Sbjct: 512 GEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLT-------- 563
Query: 685 FEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
+ + E PP + +A+VVD + + + + L GI V + S +A +
Sbjct: 564 ---LPAADDEAAPPVPIEVRRALVVDGQFINRTILERQLAPCGIAVTLCRSGIEALAE-- 618
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS--K 801
S++ + D++L + E + L + F +P ++LL +N S +
Sbjct: 619 ---LSADAGY--DLLLTDH------EMPDLDGLALAQRVRAGGFSMP-ILLLTSNPSAVR 666
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
D +A G V+ KPL S + LQ + VP LR +
Sbjct: 667 DHPAEALLAG----VLQKPLLRSDLYRRLQSLTVPPAAPDRPPPVPVPE------LRRMR 716
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL---DKLQSPHCFDACFMDIQMPEMD 918
+L +DN N++V ++ + A + + A+ D+++ D FMDI MPEMD
Sbjct: 717 VLAAEDNRTNQLVFGKMVRDLDIDLTFADNGREAVELYDRIRP----DLVFMDISMPEMD 772
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + ++A GG+ H+PI+A+TA + + G+D
Sbjct: 773 G--------RAAARAIRARERGGA-----------HVPIVALTAHALESDARASAAAGID 813
Query: 979 GYVSKPFEEENLYRELAKFFK--SKPLSGA 1006
++KP + LA F ++P+ A
Sbjct: 814 RTLTKPLRRAMILETLAAFCPAGTRPIQPA 843
>gi|119715905|ref|YP_922870.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119536566|gb|ABL81183.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 750
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 187/636 (29%), Positives = 276/636 (43%), Gaps = 131/636 (20%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLAT+SHEIRTPMNG++G+ LLLDT+L TQR YA+ G L+ LI+++LD +KI
Sbjct: 91 FLATMSHEIRTPMNGVIGLTRLLLDTELDETQRRYAKGLSEAGTTLLTLIDDILDFSKI- 149
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
EA + +L E A F DP R +
Sbjct: 150 ------EAGMLDL--------------------ERAPF-----------DPRRTLDAVAG 172
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEA 564
LV NS + + V +V +A+ +L V + TG+
Sbjct: 173 LVANSAARKDVELVVEAVPDLPAGLVGDEARLRQVLLNLASNAVKFTSTGEV-------- 224
Query: 565 ADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF 624
+ +D G A++ G V V DTGIGIP +AQ R+F
Sbjct: 225 --------VIRATLDRSG---------QPAASPGETPVRFEVV--DTGIGIPQAAQARLF 265
Query: 625 MPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684
F QA++ST+R YGGTG+GL+IS+ LV LM G I F S+ GSTF F
Sbjct: 266 RSFTQAEASTTRRYGGTGLGLAISRRLVRLMGGTIGFESQEGHGSTFWFAVPLTAA---- 321
Query: 685 FEDIKQSKSEDLPPGFKG-LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAK 743
D+ S+ D G +A++VD+ + V L G+ ++ +A T
Sbjct: 322 --DLDTSRDADPARGIPADARALLVDDNATQRRVLGAQLTEAGLRTDVTGR-PEAVLTLM 378
Query: 744 NGLTSSEDKFQPDIILVEKDCWISGEDS-------GFNAQLLDWKPNGHVFKLPKLILLA 796
++ D + ++LV D + G D G + L D +P +LL+
Sbjct: 379 RAAAAAADPYA--VVLV--DSRLPGVDGLEVLAAIGADPALRDSRP----------VLLS 424
Query: 797 TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA---------GRGVP 847
D +AG TV+ KP+R S + + L ++L+ G
Sbjct: 425 ATAELDHDAVLRAG--VSTVVTKPVRLSELRSRLTELLAPPAPTAPEPDAPAPPRGSAPS 482
Query: 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDA 907
GS+ +G ++LV +DN +N++VA G L + G V+ A K A+ + + A
Sbjct: 483 RGSAPSRG-----RVLVAEDNSINQLVAEGLLTRLGFEVDLAGDGKEAVAAVAR-QSYTA 536
Query: 908 CFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967
MD QMP MDG++AT IR E GT LPI+AMTA
Sbjct: 537 VLMDGQMPIMDGYQATAEIRSREV--------------GT------RLPIIAMTASATED 576
Query: 968 TFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
L GMDG+V+KP + L R L+++ ++P+
Sbjct: 577 DKRRALAAGMDGFVAKPVDAATLDRVLSQWAPAEPV 612
>gi|226501658|ref|NP_001142079.1| uncharacterized protein LOC100274238 [Zea mays]
gi|194707022|gb|ACF87595.1| unknown [Zea mays]
Length = 186
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 128/184 (69%), Gaps = 2/184 (1%)
Query: 818 MKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAG 877
MKPLRASM+ L + L +K GV S+ LL K+ILVVDDN VN VAAG
Sbjct: 1 MKPLRASMLQVSLHRALGGIDKLHCRNGVLGNSTLG-SLLHKKRILVVDDNIVNLKVAAG 59
Query: 878 ALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
ALKK+GA V CA S K A+ +L+ PH FDACFMDIQMPEMDGFEAT+RIR ME NEQ+
Sbjct: 60 ALKKYGAEVTCADSGKKAITQLKPPHSFDACFMDIQMPEMDGFEATKRIRVMERDLNEQI 119
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
G + + R + PILAMTADVI AT ++CLK MDGYVSKPFE E LYRE+A+F
Sbjct: 120 ERGEAPPECAGLR-QWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARF 178
Query: 998 FKSK 1001
F+++
Sbjct: 179 FQNQ 182
>gi|333996259|ref|YP_004528872.1| sensory transduction histidine kinase [Treponema azotonutricium
ZAS-9]
gi|333736520|gb|AEF82469.1| sensory transduction histidine kinase [Treponema azotonutricium
ZAS-9]
Length = 720
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 192/644 (29%), Positives = 297/644 (46%), Gaps = 137/644 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD-TDLSSTQRDYA-QTAQICGKALIA 432
AE A +KS+FLA +SHEIRTPMN I+GM ++ TD+ ++DYA + L+
Sbjct: 193 AEIASKSKSEFLANMSHEIRTPMNAIIGMTSIGKSATDID--RKDYAFGKIENASTHLLG 250
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
+IN++LD +KIEA KLEL F+ +L V+++ + + K + + +P+
Sbjct: 251 IINDILDMSKIEANKLELSYAEFDFEKMLQKVVNVINFRVEEKHQNFTIRIDKNIPQ--- 307
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
NL+G+ + + V +L ++ T EEG
Sbjct: 308 -----------NLIGDDQRIAQ-----VITNLLSNSVKFT-----------PEEGSIH-- 338
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
L+A HL+ EG + + T+ V V DTG
Sbjct: 339 ---------LDA-----------HLVKEEGSPPDLPGV-----------CTIQVEVTDTG 367
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
IGI Q R+F F QA+SSTSR +GGTG+GL+ISK +VE+M G I S P GSTF+
Sbjct: 368 IGINKEQQSRLFSSFQQAESSTSRKFGGTGLGLAISKRIVEMMGGSIWIESEPGKGSTFA 427
Query: 673 FTAVFGKCKEYVFEDIKQSKSED------LPPG--FKGLKAVVVDEKPVRAAVTQYH--- 721
FT Q+K D L PG +K ++ + VD+ P + +Y
Sbjct: 428 FTV--------------QTKRGDSKPASLLRPGVNWKNIRILAVDDAP---EIREYFGDI 470
Query: 722 LNRLGIMVKMSSSIKDASSTAK-NGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779
+RLGI +++S +DA + K NG DI V D + G D F+ ++ +
Sbjct: 471 ASRLGITWDIAASGEDACALVKQNG--------PYDIYFV--DWKMPGMDGIEFSRRIQE 520
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
K H + +I A +S + +AKA G D + KPL S I + + L
Sbjct: 521 QKEENHSVII--MISAAEWVSIE--GEAKAAG-VDKFLPKPLFLSSITDYINECLG---- 571
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
AG + S + +L+ +D +NR + L+ ++ A + AL
Sbjct: 572 --AGNTLSEQDSGDAEHFKAYHVLLAEDVEINREIVLALLEPTELQIDSAENGAEALRMF 629
Query: 900 -QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
++P +D FMD+QMPEMDG+EATRRIR ++ AK+ +PI+
Sbjct: 630 TETPDRYDMIFMDVQMPEMDGYEATRRIRALDIP--------------RAKK----IPII 671
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
AMTA+V + CL GM+ +V KP + + + +L ++ +P
Sbjct: 672 AMTANVFREDIENCLAAGMNDHVGKPLDFKEVLEKLRQYLAKEP 715
>gi|444378378|ref|ZP_21177577.1| hypothetical protein D515_2320 [Enterovibrio sp. AK16]
gi|443677475|gb|ELT84157.1| hypothetical protein D515_2320 [Enterovibrio sp. AK16]
Length = 773
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 185/668 (27%), Positives = 296/668 (44%), Gaps = 141/668 (21%)
Query: 345 LLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML 404
L+ Y Y I K+ + +++ K++AE A+ KS+FLA +SHEIRTPMNGI+GM
Sbjct: 210 LVTLYTQYNDTIE--KMREYSAELKNAKIQAEMANQKKSEFLANMSHEIRTPMNGIIGMA 267
Query: 405 ALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
+LL T L QR++ + + +L+ +IN++LD +KIEA KLEL+ V NL + D+
Sbjct: 268 SLLKGTRLDDEQREFIEMLETSSLSLLDIINDILDFSKIEAGKLELDFVELNLFELCKDI 327
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH- 523
LF +++ KG+E + + ++GD R RQ++ NLVGN+VKFT+ G + V +
Sbjct: 328 EHLFRLRTKEKGLEFECSLDQDLSPLLMGDAPRLRQVMINLVGNAVKFTQSGSVRVDIQQ 387
Query: 524 ---LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDA 580
++ V+ D KD + G+ A ++KF+
Sbjct: 388 VDEAGDQITVRFDVKDTGI---------------------GIPADKLDTIFEKFE----- 421
Query: 581 EGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGG 640
Q++ S M+ N G TG+G+ +S+Q
Sbjct: 422 ---QADGS----MSRNFGG-----------TGLGLAISSQ-------------------- 443
Query: 641 TGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG- 699
+VELM G I S+ GS F FT F + + E P
Sbjct: 444 ----------IVELMGGHIEVESQEGEGSRFFFTVTFERAQ----------MPEATPVDA 483
Query: 700 --FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
F ++VD+ + +T L LG V +DA + D +P
Sbjct: 484 LLFSDAAMLLVDDSRLNMRITSAQLGNLGCQVTCCVHPEDAEEMIAERI----DTAKPFK 539
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGF-ADT 815
I++++K + GF+ K G + P L+++ + + D K F +
Sbjct: 540 IVILDK---LMPNSDGFSIASKLRKRFGK--RCPSLMMITA--APEVHDNVKLESFNIEG 592
Query: 816 VIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ-------GLLR----GKKILV 864
+ +P + + + L ++L + QA GV + S+ + GL ++LV
Sbjct: 593 YLSRPYKFNDLRNHLTRILRGQ---QAKLGVISMSAHKEEQASKEIGLAEPSTYSGRVLV 649
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATR 924
V+D VN+ V L K G V A + + A+D + FD FMD QMP MDG++A+R
Sbjct: 650 VEDTLVNQRVTQAMLGKLGVEVVVAENGQVAIDYCKE-GMFDLIFMDCQMPIMDGYQASR 708
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
+R+ E H PI+A+TA+ DECL+CGMD Y++KP
Sbjct: 709 LLREHEYAP--------------------HTPIVALTANATAQDRDECLRCGMDDYIAKP 748
Query: 985 FEEENLYR 992
+ L R
Sbjct: 749 VSKAELER 756
>gi|392378909|ref|YP_004986068.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
gi|356881276|emb|CCD02261.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
Length = 1264
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 174/622 (27%), Positives = 277/622 (44%), Gaps = 112/622 (18%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEAA AKS FLA +SHEIRTPMNG++GM LLL+T L Q +AQ + AL+ +I
Sbjct: 598 AEAATHAKSDFLAAMSHEIRTPMNGVIGMTDLLLETGLIGEQLQFAQAVRSSANALLTII 657
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +K+EA ++ELE + FN +L+ V+ L K+ KGI+L + +S + VLGD
Sbjct: 658 NDILDMSKLEAGRVELETLPFNPADLLEGVVELLWPKAHEKGIDLGILLSPEARHTVLGD 717
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R RQI+ NLVGN+VK+TE G++ ++ + +TD ET+
Sbjct: 718 ATRLRQILVNLVGNAVKYTETGNVVIETGI----QTQTDGNSETI--------------- 758
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
+TL +F + G S A I+ + S D T+ TG+G
Sbjct: 759 --HTL-------------RFDVIDTGIGIPSEA--ISRLFSRFEQVDRTIARRYGGTGLG 801
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ + Q L ELM+G+I+ S GS F+
Sbjct: 802 LAICKQ------------------------------LTELMQGRITVKSDQATGSQFTV- 830
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
E S + F G A+V+ + L L + V+ +S
Sbjct: 831 -------EVPIRIANGSSQQSEWMSFTGRHALVIKPPGFNRRILTAQLRSLTLDVQEASD 883
Query: 735 IKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+ A + +TS P D++ V + + + D+ LL + + + P++I
Sbjct: 884 AQTARAALAKAVTSG----HPFDVVFVSQSLFDTVSDT-----LLQFGLDRSDYA-PRII 933
Query: 794 LLAT-NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS----TENKRQAGRGVPN 848
L+ + K FA + +P+R + +++ L ++ S A P
Sbjct: 934 LVCSYGAPLASTGNDKLVPFA--CLARPIRMAALSSILGRLFSDGLDAPLATPARSHHPP 991
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
++ R IL+ +DN N+++AA L++ G TV+ AL+ + S +D
Sbjct: 992 EREINRPPARSAHILIAEDNATNQLIAATLLRRAGFTVDIVDDGVQALEAM-SLRPYDLV 1050
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MD+QMP + GFEAT IR + +P++A+TAD + T
Sbjct: 1051 LMDVQMPNLTGFEATEHIRALRGP-------------------RATVPVIALTADAMIET 1091
Query: 969 FDECLKCGMDGYVSKPFEEENL 990
+ CL+ GM+ V+KPFE L
Sbjct: 1092 RERCLRAGMNDVVTKPFERSAL 1113
>gi|344341261|ref|ZP_08772182.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
gi|343798841|gb|EGV16794.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
Length = 1247
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 195/387 (50%), Gaps = 83/387 (21%)
Query: 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430
L RAE A+ AKS FL+ +SHEIRTPMNG++GML L+LDT LS QRDYA++A+I ++L
Sbjct: 373 LAARAEDANRAKSAFLSNMSHEIRTPMNGVIGMLELMLDTALSEEQRDYAESARISARSL 432
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
+ LIN++LD +KIEA KL+L+ V F+LR L ++ ++ + ++R K + L VS++VP
Sbjct: 433 LGLINDILDFSKIEAGKLDLDLVEFDLRNQLQELEAIVARRARAKELRLVCEVSEEVPAR 492
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR 550
+ GD GR RQI+ NLV N++KFT G + V+V + +
Sbjct: 493 LRGDAGRLRQILVNLVDNAIKFTPSGEVEVRVEVCPQA---------------------- 530
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
+G G N + +A V L V D
Sbjct: 531 AGAGSGNAVPAPDA-------------------------------------VLLGFSVRD 553
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIGIP +F F Q +S +R YGGTG+GL+ISK LVELM G+I S GST
Sbjct: 554 TGIGIPADKLGLLFASFSQVESGITRRYGGTGLGLAISKQLVELMGGEIGVESVRGQGST 613
Query: 671 FSFT----AVFG---------------KCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711
F F+ A+ G + + ++ S PP F G +V ++
Sbjct: 614 FRFSLRLQAIPGDTGSAHPLAVGTPQMRPRGTTVGSVRTS-----PPRFDGASILVAEDH 668
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDA 738
+ V + L R G V ++++ +A
Sbjct: 669 ALNQEVARRLLERTGARVTLANNGAEA 695
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 23/147 (15%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
G ILV +D+ +N+ VA L++ GA V A + A+ + + H FD MD+QMP MD
Sbjct: 659 GASILVAEDHALNQEVARRLLERTGARVTLANNGAEAVAMVDA-HAFDLVLMDLQMPVMD 717
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
GFEATR I + + LPI+A +A V+ G+
Sbjct: 718 GFEATRVIHERHPQ----------------------LPIIAFSAAVMEEDLARARAAGVA 755
Query: 979 GYVSKPFEEENLYRELAKFFKSKPLSG 1005
+++KP + LYR L+ + K + G
Sbjct: 756 AHLAKPIDSGALYRTLSNWLKPLDVPG 782
>gi|392383663|ref|YP_005032860.1| putative histidine kinase [Azospirillum brasilense Sp245]
gi|356878628|emb|CCC99515.1| putative histidine kinase [Azospirillum brasilense Sp245]
Length = 991
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 192/673 (28%), Positives = 284/673 (42%), Gaps = 128/673 (19%)
Query: 350 ILYGAAIHIVKVED------DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
+L G +H+ V D +M++ K +AE AKS FLAT+SHEIRTPMNG+LGM
Sbjct: 279 LLDGRPVHLAWVYDITRRKLAERRMEQAKEQAEQTTTAKSAFLATMSHEIRTPMNGVLGM 338
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
L LL T L S QRD T + +L+ +I+++LD +KIEA K++LE V ++ A+++
Sbjct: 339 LELLERTPLDSGQRDTVATMRESATSLLRIIDDILDFSKIEAGKMDLEQVPVSIPALVEG 398
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
V + +R KG+ L +V +P + GDP R RQI+ NL GN++KFTERG I V+
Sbjct: 399 VAETLAPAARAKGLTLLTYVDPAIPPALTGDPVRLRQILFNLCGNAIKFTERGRIVVQAT 458
Query: 524 LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAAD-GRNSWDKFKHLIDAEG 582
LA RT G+ Q T +E AD G + + L+
Sbjct: 459 LAART----------------------DGSSQGGTRLRIEVADTGIGISETARRLLFQPF 496
Query: 583 FQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
Q+ +S GG TG+G+
Sbjct: 497 IQAESSTARRF---GG------------TGLGL--------------------------- 514
Query: 643 IGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG 702
SIS+ LV LM G I S P GSTF + + P G
Sbjct: 515 ---SISRRLVALMGGTIGVDSAPGAGSTFWVELTLSAAADTAPPEPPPGPPAVDEPDLSG 571
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762
L +V + ++L G V +++ DA A+ + ++ ++++V++
Sbjct: 572 LTVLVGLPDTEERRIVAHYLEAAGARV-LAAGRPDA--LAEQARMAQTERGALNVVVVDE 628
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD--TVIMKP 820
+ QLL + ++P ++L + A G AD + +P
Sbjct: 629 ALHTPA--AAQAPQLLGRRVGEA--QVPTVLL--------QDPTAIGGRLADGAVPVSRP 676
Query: 821 LRASMI--------AACLQQVLSTENKRQAGRGVPNGSS----FHQGLLRGKKILVVDDN 868
+R + + L E+ A R P S + RG+ ILV +DN
Sbjct: 677 VRRTPLVRAVARAAGRALTDATPGEDPPPAVRCAPAVLSPERVIAEAEARGRLILVAEDN 736
Query: 869 GVNRMVAAGALKKFGATVEC---AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRR 925
+NR V L G T E A A AAL + + + DIQMPE+DGFE TRR
Sbjct: 737 AINRKVLQMQLTSLGHTAELTNGGAEALAALGRRR----YALLLTDIQMPEVDGFELTRR 792
Query: 926 IRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
IR E HLPI+A+TA+ A + GMD +SKP
Sbjct: 793 IRAAERATGA------------------HLPIVALTANAAPADIESYRAAGMDEALSKPL 834
Query: 986 EEENLYRELAKFF 998
+ L L++F
Sbjct: 835 DLAKLDAALSRFL 847
>gi|407778591|ref|ZP_11125854.1| PAS sensor protein [Nitratireductor pacificus pht-3B]
gi|407299668|gb|EKF18797.1| PAS sensor protein [Nitratireductor pacificus pht-3B]
Length = 970
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 193/683 (28%), Positives = 306/683 (44%), Gaps = 149/683 (21%)
Query: 350 ILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
+ G + I ++++ +++ + A AD AKS+FLA +SHEIRTPMNG+LGM LL
Sbjct: 394 LFVGVRVDITELKERERELRAARETAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLTK 453
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
T+L++ Q+ +A G AL+ +IN++LD +KI+A + L+ F+L ++DV +L S
Sbjct: 454 TELTAKQKTFADIILKSGNALLTIINDILDFSKIDAGHIVLDEAPFHLAEAIEDVATLMS 513
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529
+++ K +EL V V + V+GD GR RQI+TNLVGN+VKFTE+GH+ V V A
Sbjct: 514 SRAKEKDLELIVRVDPGIAHAVVGDAGRIRQILTNLVGNAVKFTEKGHVLVNVGGA---- 569
Query: 530 VKTDAKDETLLNGGTEEGVCRSGTGQFN-TLSGLEAADGR--NSWDKFKHLIDAEGFQSN 586
G E+G T QF+ T +G+ G+ +DKF +DA + +
Sbjct: 570 -------------GIEDG---RQTLQFSVTDTGIGIPKGKLDQVFDKFSQ-VDASSTRRH 612
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
E TG+G L+
Sbjct: 613 ----------------------EGTGLG------------------------------LA 620
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV 706
I+ LVELM G+I S GSTF FTA F + + I P G + +
Sbjct: 621 ITSRLVELMGGRIGVDSVEGRGSTFWFTATFPVAEAPERQPIA-------PRDVSGARVL 673
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
VVD+ + + G + + +D K +++ D ++V+ I
Sbjct: 674 VVDDNATNRMILSEQMAHWGF---DACAARDVPEGLKVLRAAADLNLPVDCLVVDYQMPI 730
Query: 767 SGEDSGFN-AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS- 824
+G + Q + +P + +P ++L + + S A++ A +I KP R++
Sbjct: 731 M---NGIDMVQAMQRQPA--LAGIPVVLLTSVDQSLASL-GARSPAIAAQLI-KPTRSAA 783
Query: 825 ---MIAACLQ----------------QVLSTENKR----QAGRGVPNGSSFHQGLLRGKK 861
I A +Q +V S E ++ +A RG P + G
Sbjct: 784 LLEAIVAAIQGHRADDEADAEASEPPEVRSAEQEQSQAHEADRGDPEAAEG------GID 837
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAK---AALDKLQSPHCFDACFMDIQMPEMD 918
ILV +DN VN++V L + G E + + AA +LQ MD+ MPEM+
Sbjct: 838 ILVAEDNEVNQLVFRQILAETGLRFEIVDNGRRAVAAYSRLQPA----MILMDVSMPEMN 893
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G EAT+ IR+ E DG A+R +P++ +TA + + CL+ GMD
Sbjct: 894 GLEATKEIRRAE--------------DGQARR----VPVIGVTAHALKGDRERCLEAGMD 935
Query: 979 GYVSKPFEEENLYRELAKFFKSK 1001
Y+SKP L ++ + K
Sbjct: 936 DYLSKPISPRALLDKINLWIGPK 958
>gi|109899905|ref|YP_663160.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
gi|109702186|gb|ABG42106.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
Length = 1172
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 188/659 (28%), Positives = 309/659 (46%), Gaps = 117/659 (17%)
Query: 347 VGYILY--GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML 404
VGY Y G + + D +M++ + +A+ A AKS+FLA +SHEIRTP+NGI+GM
Sbjct: 623 VGYAEYQNGRPVVLRGAFQDITEMKKAEEQAKEASRAKSEFLANMSHEIRTPINGIVGMN 682
Query: 405 ALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
LLL T+L+ QR +A+ ++L+ LIN++LD +KIEA KL +E++ F+L +L ++
Sbjct: 683 DLLLATELTDKQRHFAELVHSSSESLLLLINDILDFSKIEAGKLSIESIYFDLHLLLGNI 742
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+ F+ +++ KG+EL + VP+++ DPGR RQI+ NL+GN++KFT G + ++V L
Sbjct: 743 IDTFASRAQQKGLELVFDLQMDVPQWITSDPGRIRQILNNLLGNAIKFTHHGEVIMRVAL 802
Query: 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
+K +D + G+ + + + KF Q
Sbjct: 803 EGDNQLKFFVQDTGI---------------------GIHEDNQKALFSKF--------MQ 833
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
++S GG TG+G+ +S Q S GGT +G
Sbjct: 834 VDSSTTRHF---GG------------TGLGLAISKQ-------------LSELLGGT-VG 864
Query: 645 LSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLK 704
+S S+ Q GSTF FT E + E+ Q S P L+
Sbjct: 865 VS----------------SQWQQGSTFWFTI----APEALNENQIQF-SPLFPEREAPLQ 903
Query: 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKF-QPDIILVEKD 763
++VD+ P + V L ++V+ + S +S+A L S K + D+ L++ +
Sbjct: 904 VLLVDDNPTLSTVLGKWLTSNNMVVQHAES----ASSALKALRQSHLKMTKIDVALIDSN 959
Query: 764 CWISGEDSGFNA-QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV--IMKP 820
+G N +L + +F +IL+ + D +K + A+ V I KP
Sbjct: 960 L------AGINGIELTKAIRSNDLFAKLHIILMTPH---DWLEKGTSSQLANPVSYIAKP 1010
Query: 821 LRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALK 880
++ + L + + +P ++ + IL+V+DN +N+ V LK
Sbjct: 1011 VKPETLKGAFTGALENGDNTKLITALPETKLLNK-YRQAPHILLVEDNFINQQVVIEMLK 1069
Query: 881 KFGATVECAASAKAALDKLQSPHC-FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
K +V+ A + + A+ L+ FDA MD QMP MDG+EA+R IR+ Q N
Sbjct: 1070 KLHCSVQVAENGQEAIHTLEESEAKFDAILMDCQMPIMDGYEASRTIRK------SQHSN 1123
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
S+ LPI+A+TA+ + + CL GM+ Y++KP L EL K+
Sbjct: 1124 YAST-----------LPIIALTANAMKGDKEACLAAGMNAYLTKPIVLTELRAELIKWL 1171
>gi|358637994|dbj|BAL25291.1| hypothetical protein AZKH_2992 [Azoarcus sp. KH32C]
Length = 744
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 188/645 (29%), Positives = 290/645 (44%), Gaps = 126/645 (19%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE+A+ A+ FLA +SHEIRTPMN ILGM L LD + + R Y T + ++L+
Sbjct: 194 KEQAESANRARGFFLANMSHEIRTPMNAILGMTELALDATVEAEPRSYLTTVKSSAESLL 253
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN+VLD +KIEA K+ELE+V ++R IL+DV+ F+ + KG+E+ + V+ ++P+ +
Sbjct: 254 NIINDVLDLSKIEAGKVELESVPMSVRTILNDVVRAFAVSAHGKGLEIMLDVAPEMPDRL 313
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
GDP R RQI+ NL+GN++KFTERG + VK + R ++ + VC +
Sbjct: 314 FGDPTRLRQILANLIGNAIKFTERGEVLVKAWVLRRAG----------MSLYLQFAVCDT 363
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
G G+ A +D F Q++ S GG T
Sbjct: 364 GI-------GIAADHHEQIFDAFT--------QADVSTARRF---GG------------T 393
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ +S Q LV+L+ GQI S P G++F
Sbjct: 394 GLGLAISNQ------------------------------LVKLLDGQIWLESEPGKGTSF 423
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLP------PGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
FT F S +P P +G + +VVD+ A + L RL
Sbjct: 424 YFTVRFA----------ADQTSSSIPVAPVALPLLQGRRVLVVDDCVHAADLLGKLLQRL 473
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
G V+++ A + S+ D F DI++V+ +GF L+D G
Sbjct: 474 GAHVEIACDPIQAEV-----MRSARDPF--DILVVDAGM---SPPAGF--ALMDAPGRGE 521
Query: 786 VFKLPKLILLA-------TNISKDECDKAK-AGGFADTVIMKPLRASMIAACLQQVLSTE 837
++LLA S++ KA+ D ++ +RA++ +Q V+ E
Sbjct: 522 AI----IVLLAQHGQQQTLQQSRNSAVKARLVKPVFDAELLDAVRAAL---GVQSVVRDE 574
Query: 838 -NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+ + + F +L+V+D VN+ +A L K G V AA+ + AL
Sbjct: 575 LDAFRLDDVRLDDVRFQNDDGEPLNVLLVEDTPVNQTLAVKLLAKAGHRVTVAANGREAL 634
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
++ FD MD+QMP +DG EAT IR E + M G +R
Sbjct: 635 ERFDRQR-FDLILMDVQMPVLDGMEATTAIRAREMNRSWAM--------GQHQRVSY--- 682
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I AMTA + + CL GMD Y+SKP + L L + + +
Sbjct: 683 IAAMTAHAMEGDRERCLAAGMDDYLSKPIRRKALDEVLKRAIEHR 727
>gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
Length = 1522
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 180/647 (27%), Positives = 285/647 (44%), Gaps = 144/647 (22%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AKS FLA +SHE+RTPMN ILGML LL T L Q DYA ++ + L+ L+
Sbjct: 764 AEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAAKSETATRTLLRLL 823
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIE+ K+ LE + F++ +L D+ + S + +E+ + +P+FV GD
Sbjct: 824 NDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLKATKVEVLFDIDPSLPQFVEGD 883
Query: 495 PGRFRQIITNLVGNSVKFTERGHI--FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
R +QI+TNL GN++KFTE+G + F+KV R V+ L G + G+ +
Sbjct: 884 SMRLQQILTNLGGNALKFTEQGEVVLFIKVIDRSRHQVR-------LQFGVRDTGIGIAP 936
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
Q SG A+ + +F GG TG
Sbjct: 937 ENQKTIFSGFTQAEASTT-RRF----------------------GG------------TG 961
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+G+ +S + F+ M GG +++ S+ GS F
Sbjct: 962 LGLVISQR---FVALM----------GG-----------------ELTLESQLGKGSLFH 991
Query: 673 FTAVFGKCKE--YVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
FT + + V + K L+ +VVD+ P + + +
Sbjct: 992 FTIMLSLPSDTNLVINNEKPDVLATRALALNNLRVLVVDDNPTACELIK----------Q 1041
Query: 731 MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG------ 784
M S+K A NG D + K + +G + A +DWK G
Sbjct: 1042 MGESLKWIVDVATNG---------SDALQRIKQQYDNG--VAYGALFIDWKMPGLDGWQT 1090
Query: 785 --------HVFKLPKLILLATN-----ISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
V LP ++++ + + + E ++A G+ ++KP+ ASM+ +
Sbjct: 1091 SKYVREMMPVGNLPMIVMVTAHDREMLLQRSEEEQALLDGY----LVKPITASMLLDSVI 1146
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
LS + + V +S L G ++L+V+DN N+ +A L+ GA V A
Sbjct: 1147 DALSEHQQPDVPKLVTAEASHR---LSGIRLLIVEDNLNNQQIARELLEDEGAVVSMANH 1203
Query: 892 AKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
K A++ L+ +P FD MD+QMP MDGF AT+ IR+ N
Sbjct: 1204 GKEAIEILEHNPSLFDLVLMDLQMPVMDGFNATQYIRKSIGLKN---------------- 1247
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
LPI+AMTA+ + + D CL GM+ ++ KPF+ NL + K+
Sbjct: 1248 ----LPIIAMTANAMVSDRDACLAAGMNDHIGKPFDLNNLIHIIRKY 1290
>gi|359688370|ref|ZP_09258371.1| multi-sensor hybrid histidine kinase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748435|ref|ZP_13304727.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
gi|418756108|ref|ZP_13312296.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384115779|gb|EIE02036.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404275504|gb|EJZ42818.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
Length = 864
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 173/613 (28%), Positives = 290/613 (47%), Gaps = 118/613 (19%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLA +SHEIRTPMNG++GM LL+D++L++ Q++YA+ Q G++L+ +IN++LD
Sbjct: 346 AKSEFLAMMSHEIRTPMNGVIGMTELLIDSNLNTEQKEYAEIIQKSGESLLNIINDILDY 405
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIE+ L LE F++ +++VL LF ++ K I+L ++ VP+ +L D R +Q
Sbjct: 406 SKIESGTLSLEIREFSVIETIEEVLDLFRSRAAQKQIDLVYYLDPNVPDRILCDSLRLKQ 465
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
I+ NL+GN++KFTE+G IF+ ++ K + K T+L + G+
Sbjct: 466 ILINLIGNALKFTEQGEIFLSAEVS-----KLEGKLYTILFSIRDTGI------------ 508
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G+ + + + F +Q + S GG TG+G+ +S++
Sbjct: 509 GIPSEKQKELFQPF--------YQVDTS---STRKYGG------------TGLGLSISSR 545
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF-TAVFGK 679
L+E+M G I S VG+TFSF V G
Sbjct: 546 ------------------------------LIEMMGGIIWVESELNVGTTFSFYIQVEGN 575
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ + E S+ E+ K +++D+ P + Y L LG++ + S ++A
Sbjct: 576 NQAKIKEKAANSELEN-------KKVLILDDNPTNLKILAYQLQILGLITFSAKSKEEA- 627
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
L + + PD+ ++ D + G AQ + K N H P L+LL+++
Sbjct: 628 ------LNLLDLEIMPDLGIL--DYNLPGSTGIEIAQEMR-KRNFH---FP-LVLLSSSF 674
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRG 859
D DK AG + KP++ I + ++L+ + + + + +L
Sbjct: 675 L-DPKDKEIAGELFAGELSKPVKKKDIERIVTEILAEGGSKAKANTRSSYLAGQKEILSS 733
Query: 860 K---KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ KI+V +DN +N+ +A ++K G + K AL L+ + FMD+ MPE
Sbjct: 734 QFPFKIMVAEDNEINQTLAKRIIQKLGYEPLIVPNGKEALIALREKKI-NLIFMDVHMPE 792
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG +AT+ IR S ++ I+AMTA + D CL+ G
Sbjct: 793 MDGLQATQVIRNTWSVESQPY-------------------IIAMTAAAMQGDRDLCLRAG 833
Query: 977 MDGYVSKP--FEE 987
M+ Y+SKP FEE
Sbjct: 834 MNDYISKPIVFEE 846
>gi|302793795|ref|XP_002978662.1| sensory histidine protein kinase [Selaginella moellendorffii]
gi|300153471|gb|EFJ20109.1| sensory histidine protein kinase [Selaginella moellendorffii]
Length = 984
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 176/314 (56%), Gaps = 11/314 (3%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++QE + AE A AKS+FLA +SHEIRTP++ I+GM +L LDT+L+ QR++ T
Sbjct: 477 ELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDTNLTEEQREHLDTVAQS 536
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+L+ ++N +LD AKIEA +LELE V FN+ +L + + +R K ++++ VS +
Sbjct: 537 ADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKMLQVSARQKDLDMSWEVSAE 596
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL-AERTMVKTDAKDETLLNGGTE 545
VP+ ++GD GR +Q I NLVGN++KFT+RG +F+ L E V+ + L
Sbjct: 597 VPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLSAKLYTEDDFVRATSSTSQALEYVKA 656
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
RS + +DG NS L+ SN E V ++
Sbjct: 657 LERRRSSHSTLASPRAFLHSDGSNS----LKLVSPRNHVSND------PQRREEEAVCVL 706
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V+DTGIGI Q+ VF F QAD+S +R YGGTG+GLSI + LV +M G+I S
Sbjct: 707 FSVKDTGIGISQEKQKEVFKAFSQADTSITRLYGGTGLGLSIVERLVAMMGGRIWLESEA 766
Query: 666 QVGSTFSFTAVFGK 679
GSTF F A F +
Sbjct: 767 GKGSTFYFAACFDR 780
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS------------- 901
G+LRG ++L+ +DN +N+ VA L+KFG TVE + L L+
Sbjct: 834 GILRGMRVLLAEDNVINQKVACQQLRKFGTTVEVVGDGEQCLSALERDRDRYDLILMDVQ 893
Query: 902 -----PHCF-DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
P D F+ +QMP +DG EATR IR E A +
Sbjct: 894 VSFFFPFVLPDLSFLFVQMPVLDGLEATRSIRAQEKLAGYRSK----------------- 936
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
PI+ +TA I D+C++ GMD Y KPF + L
Sbjct: 937 PIIGLTAHAIQGYEDKCIEAGMDAYACKPFRAKQL 971
>gi|386827592|ref|ZP_10114699.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386428476|gb|EIJ42304.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 762
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 185/653 (28%), Positives = 292/653 (44%), Gaps = 115/653 (17%)
Query: 347 VGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
+G ++ G + K++ +++ K AE+A AKSQFLAT+SHEIRTPMNG+LGM L
Sbjct: 218 LGILIDGFNDMLAKIQKRDKELEHAKELAESASQAKSQFLATMSHEIRTPMNGVLGMTEL 277
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
LLDT L+ QR A+T Q G+ L+ +IN+VLD +KIEA L L F++ A+++D L
Sbjct: 278 LLDTGLNERQRHLAETVQNSGQTLMTIINDVLDFSKIEAGHLALYNSEFDVHALVEDTLD 337
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
LF+ K + L ++ VP+ + GD R RQI++NL+ N++KFTE G + +KV
Sbjct: 338 LFAGAIVQKKLALCSHIAANVPKMLSGDLVRLRQILSNLINNAIKFTEVGEVVIKV---- 393
Query: 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSN 586
T V DA L + G+ G+ A + F +D
Sbjct: 394 -TQVNNDATRVQLKFAIYDTGI------------GIPEAKCPILFQPFTQ-VDG------ 433
Query: 587 ASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
+M GG TG+G+ +S Q M GG
Sbjct: 434 ----SMSRRYGG------------TGLGLAISKQLAQLM-------------GG------ 458
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV 706
+I S+ GS F FTA K + S ++D P L+ +
Sbjct: 459 -----------EIGVESKINQGSLFWFTAWLDKLQTPTV-----SPAQDKLP---ALQVL 499
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCW 765
+V K + +L G+ V D S + ++ + P D++L+E
Sbjct: 500 IVAYKNHCVQILAEYLTTWGLHVDFC----DEQSAVLAQVQTAITQHTPYDVVLLELMHN 555
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIM-KPLRAS 824
+ + + + + H+ IL+A S D+ K+ A + I+ KP+R +
Sbjct: 556 PKQDSIALAQAIKEQQESTHI------ILIA---SVDQVRKSYLQHPAISAILHKPIRQA 606
Query: 825 MIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
+ CL V++ + + F KIL+ +DN VN+ L+ G
Sbjct: 607 RLYQCLCNVINNPFPQTEAEQTDSTERF------NAKILLAEDNIVNQQYVRLVLEDLGC 660
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
V+ + L +L+ +D FMD QMP +DG AT+ IRQ + +N
Sbjct: 661 QVDLVEDGEQVLKQLRL-QAYDLIFMDCQMPHLDGLAATKLIRQ------QGYLN----- 708
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
AK++ +PI+A+TA + + CL+ GMD Y+SKP ++ L LA +
Sbjct: 709 ---AKKNH-AIPIIALTAHAMQGDREYCLQIGMDDYLSKPVSKQQLREILAHW 757
>gi|333997328|ref|YP_004529940.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
gi|333738372|gb|AEF83862.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
Length = 811
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 187/649 (28%), Positives = 287/649 (44%), Gaps = 125/649 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR-D 418
+VE+ ++Q + AE A++AKS+FL+ +SHEIRTPMN I+GM + ++T+R D
Sbjct: 269 RVEERTKELQVSQQAAERANMAKSEFLSNMSHEIRTPMNAIIGMTTI--GGRAANTERKD 326
Query: 419 YA-QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
YA Q + L+ +INE+LD +KIEA KLEL + FN +L V+++ + K K
Sbjct: 327 YAFGKIQDASQHLLGVINEILDMSKIEANKLELSFLEFNFEKMLQKVVNVINFKVEEKHQ 386
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKD 536
++ + +P ++GD R Q+ITNL+GNSVKFT E G I + L + D +
Sbjct: 387 IFSIHIDKAIPPVLIGDDQRLAQVITNLLGNSVKFTPEGGAISLTTKLIAGDESQGDDAE 446
Query: 537 ETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASN 596
T+ + G+ S Q + + AD S KF
Sbjct: 447 YTVQIEVQDSGIGISPAQQDKLFTSFQQADSGTS-RKF---------------------- 483
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
GG TG+G+ +S K +VE+M
Sbjct: 484 GG------------TGLGLAIS------------------------------KRIVEMMG 501
Query: 657 GQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE---DLPPG--FKGLKAVVVDEK 711
G+I S GSTF FT ++ KSE L PG + ++ + VD+
Sbjct: 502 GRIWIESELGKGSTFIFTV-----------KARRGKSEYKSSLAPGRNWGNIRVLAVDDA 550
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDA-SSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
P R G ++ ++A + KNG+ DI V+ W +
Sbjct: 551 PEIREYFAEIAQRFGFACDVAPDAEEALTLIQKNGVY--------DIYFVD---W---QM 596
Query: 771 SGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
G N L K H +I++++ D+AK G D + KPL S IA +
Sbjct: 597 PGINGIELSRKIKEHQDSKSVVIMISSTEWDLIQDEAKKAG-VDKFLPKPLFPSPIADLI 655
Query: 831 QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
+ L G S+ +G++IL+ +D +N+ + L+ + CA
Sbjct: 656 TECLGQGAAPSGETGTEEAVSY-----KGRRILLAEDVDINQEIVRTLLEPTELEIVCAG 710
Query: 891 SAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ K AL + P F+ FMD+QMPEMDGFEATR IR +E+ N +
Sbjct: 711 NGKEALRIFSEDPLGFNMIFMDVQMPEMDGFEATRSIRALENAPNAKT------------ 758
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA+V + CL GM+ +V KPF+ E + +L K+
Sbjct: 759 -----IPIVAMTANVFREDVERCLASGMNDHVGKPFDFEEILEKLRKYI 802
>gi|411117040|ref|ZP_11389527.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410713143|gb|EKQ70644.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1270
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 186/678 (27%), Positives = 295/678 (43%), Gaps = 178/678 (26%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+++ + +AE A KS FLAT+SHEIRTPMNG+LGM +LLLDT L++ QRD+ +T +
Sbjct: 573 QELERARQQAERASQMKSTFLATMSHEIRTPMNGVLGMTSLLLDTQLNAEQRDFVETIRC 632
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G+ L+ LIN++LD +K+EA ++ELE + F+L +++V L + + KG+ELA V
Sbjct: 633 SGETLLTLINQILDFSKLEAGEMELETLEFDLNTCIEEVADLVAATAHAKGLELATLVYR 692
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P + GD R RQ++TNLV N+VKFT +G + ++ L T T A T++ T+
Sbjct: 693 NLPTRLKGDVSRLRQVLTNLVSNAVKFTAQGEVVIQAALKAET--DTTA---TIMFSVTD 747
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ G+ R + F Q +AS GG
Sbjct: 748 TGI------------GIPLEAQRKLFKPFS--------QVDASTTRRY---GG------- 777
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ +S Q LVELM G+I S
Sbjct: 778 -----TGLGLAISKQ------------------------------LVELMGGEIGVDSTE 802
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP---------PGFKGLKAVVVDEKPVRAA 716
+ F FT F K +LP P +KA+VVD+
Sbjct: 803 GKEARFWFTLTF-------------EKQVNLPAALAPSATAPNLSQIKALVVDDHTTNRK 849
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
V + ++ G+ V D ++ A+ L D+ I+G + ++
Sbjct: 850 VLCHQISAWGMRV-------DEAANARTALKMLRDQA------------IAG--TPYHVA 888
Query: 777 LLDWK-------------PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA 823
+LD + + + + +LI++ + A GF+ ++KP++
Sbjct: 889 ILDMQMPEMDGEMLGACIKSDQLLQTTRLIMMTSLNHWGGARNALQLGFS-AYLVKPVKQ 947
Query: 824 SMIAACLQQVLSTENKRQAGRGVPNG--------------------------SSFHQGLL 857
S + C+ L+ NK + N SS H
Sbjct: 948 SRLLDCILNALT--NKIEGFEPSVNTSSVALLPTSLPLDSSTELAITSDSSFSSLHNQQP 1005
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPE 916
R K+L+V+DN +N+ V LK G + AA+ K AL L Q P +D MD QMP
Sbjct: 1006 R-LKLLLVEDNVINQKVTLNQLKNLGYKADVAANGKEALQMLEQIP--YDLILMDCQMPV 1062
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
+DG+ T+ IR++E GT + H ++A+TA+ + C++ G
Sbjct: 1063 LDGYSTTQEIRRIE---------------GTDR----HTIVVALTANALREDRARCIQAG 1103
Query: 977 MDGYVSKPFEEENLYREL 994
MD Y+SKP ++ L +L
Sbjct: 1104 MDDYLSKPILKDKLAAKL 1121
>gi|402488931|ref|ZP_10835736.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
gi|401812115|gb|EJT04472.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
Length = 1125
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 183/653 (28%), Positives = 281/653 (43%), Gaps = 133/653 (20%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 573 ELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 632
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 633 GNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 692
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V +T+ G
Sbjct: 693 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGF------------QTVAGGEIMA 740
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ TG LE+ +DKF +DA + +
Sbjct: 741 SIRIEDTGIGIPREKLESV-----FDKFSQ-VDASSTRRH-------------------- 774
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ ++A LV+L G ++ S
Sbjct: 775 --EGTGLGLAITA------------------------------GLVDLFGGYLNVESEWS 802
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F + + + LP +G + +VVD+ V + L+ G
Sbjct: 803 KGSVFTVNLPFAVAAARL-------EPKPLPINVQGARILVVDDNDVNRRILTEQLSLWG 855
Query: 727 I----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ + + A G+T D PD ++G D A+ L
Sbjct: 856 FDGVAAEGGGTGLAILEAAADLGITVDAVVLDYHMPD---------MNGADV---ARRLR 903
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
P +LP + L + +IS E + A G A +MKP RA+++ + +V+
Sbjct: 904 ADP--RFAELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVVRAGRV 959
Query: 840 RQAGRG--------------VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+Q Q +LV +DN VN++V L+ G +
Sbjct: 960 KQVSEAEIARLQAQAVVPAPPEPEPVPQQRATEFVDVLVAEDNEVNQIVFTQILQGTGLS 1019
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
+ + A+ + H MD+ MP M+G EATR IR E
Sbjct: 1020 FLVVDNGELAVAAWER-HTPRIIMMDVSMPVMNGHEATRTIRAREK-------------- 1064
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
G R +PI+ +TA + + D CL GMD Y+SKP E L ++ ++
Sbjct: 1065 GQGHR----VPIIGVTAHALESDRDLCLDAGMDDYMSKPISPELLEEKIRQWL 1113
>gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 1126
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 183/656 (27%), Positives = 286/656 (43%), Gaps = 138/656 (21%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 575 ELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 634
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 635 GNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 694
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V E G
Sbjct: 695 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGF------------EAAAGGEIMA 742
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ TG G+ A + +DKF +DA + +
Sbjct: 743 SIRIEDTG-----IGIPAEKLESVFDKFSQ-VDASSTRRH-------------------- 776
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ ++A LV+L G ++ S
Sbjct: 777 --EGTGLGLAITA------------------------------GLVDLFGGYLNVESEWG 804
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F + + + LP +G + +VVD+ V + L+ G
Sbjct: 805 KGSVFTVNLPFAVAAARL-------EPKPLPINVQGARILVVDDNDVNRRILTEQLSLWG 857
Query: 727 I----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ + + A G+T D PD ++G D A+ L
Sbjct: 858 FDGVAAEGGGTGLAILEAAADLGITVDAVVLDYHMPD---------MNGADV---ARRL- 904
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ + +LP + L + +IS E + A G A +MKP RA+++ + +V+
Sbjct: 905 -RADRRFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVVRASRV 961
Query: 840 RQAGRG-------------VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT- 885
+QA Q +LV +DN VN++V L+ G +
Sbjct: 962 KQASEAEIARLQAEAAAPVPAPAPLPQQRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSF 1021
Query: 886 --VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
V+ A AA ++ H MD+ MP M+G +AT+ IR+ E
Sbjct: 1022 LVVDNGEEAVAAWER----HRPRIIMMDVSMPVMNGHQATQTIREREK------------ 1065
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
G R +PI+ +TA + + + CL GMD Y+SKP E L ++ ++ +
Sbjct: 1066 --GQGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWLR 1115
>gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. 4H-3-7+YE-5]
gi|410639810|ref|ZP_11350355.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola chathamensis
S18K6]
gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. 4H-3-7+YE-5]
gi|410140691|dbj|GAC08542.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola chathamensis
S18K6]
Length = 1172
Score = 199 bits (505), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 185/641 (28%), Positives = 298/641 (46%), Gaps = 115/641 (17%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D +M++ + +A+ A KS+FLA +SHEIRTP+NGI+GM LLL T+L+ QR +A+
Sbjct: 642 DITEMKKAEEQAKEASRTKSEFLANMSHEIRTPINGIVGMNDLLLATELTKKQRHFAELV 701
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
++L+ LIN++LD +KIEA KL +E++ F+L +L +++ F+ +++ KG+EL +
Sbjct: 702 HSSSESLLLLINDILDFSKIEAGKLSIESIDFDLHLLLGNIIDTFASRAQQKGLELIFDL 761
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
VP+++ DPGR RQ++ NL+GN++KFT G I +++ L+G
Sbjct: 762 HPDVPQWIASDPGRIRQVLNNLLGNAIKFTHHGEIILRI----------------TLDGE 805
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+ C TG G+ + + KF Q ++S GG
Sbjct: 806 KQLKFCIIDTG-----IGIHEDNQAALFSKF--------MQVDSSTTRNF---GG----- 844
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
TG+G+ +S Q S GGT +G+S S
Sbjct: 845 -------TGLGLAISKQ-------------LSELLGGT-VGVS----------------S 867
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
R Q GSTF FT F + + P + L+ +VVD+ P +A+ L
Sbjct: 868 RWQQGSTFWFTIALE-----AFSRGHGTSTPWFPELDRSLQVLVVDDNPTLSAILGQWLT 922
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD--WK 781
I V + ++AS K + D+ L++ G N L +
Sbjct: 923 TQNIQVYHA---QNASLALKRLREQQLSSAKIDVALIDTSL------PGINGIELTKAIR 973
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTV--IMKPLRASMIAACLQQVLSTENK 839
N KL +IL+ + D + A + V I KP++ + + A LS+ +
Sbjct: 974 SNDQFAKL-HVILMTPH---DWLETGTASQLSGPVSYIAKPVKPASLGAAFSGALSSSSP 1029
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+A + P+ ++ + IL+V+DN +N+ V LKK +V+ A + + A+ L
Sbjct: 1030 AKAVQEEPDVKLLNK-YFQTPNILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAIHTL 1088
Query: 900 Q-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ + FD MD QMP MDG+EA+R+IR N N S+ LPI+
Sbjct: 1089 EDADKGFDLILMDCQMPIMDGYEASRKIR------NNLHSNYAST-----------LPII 1131
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
A+TA+ + + CL GM+ Y+SKP L EL K+ K
Sbjct: 1132 ALTANAMKGDREACLSAGMNAYLSKPIILAELKTELQKWLK 1172
>gi|395760464|ref|ZP_10441133.1| PAS/PAC domain-containing protein [Janthinobacterium lividum PAMC
25724]
Length = 1503
Score = 199 bits (505), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 186/621 (29%), Positives = 280/621 (45%), Gaps = 132/621 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS+FLA +SHEIRTPMN ILGML LL + L++ Q DY A+ +AL+ ++
Sbjct: 775 AEQASRAKSEFLANMSHEIRTPMNAILGMLQLLQRSGLATRQSDYTSKAEAAARALLGIL 834
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +K+EA K+ LE FN+ +L ++ + S K +EL VP ++GD
Sbjct: 835 NDILDFSKVEAGKMALELQPFNIDRLLREIGVILSTNLGEKPVELIFEQCADVPACIVGD 894
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R +QI+ NL GN+VKFT+ G I V+V + E DE +L E V +G G
Sbjct: 895 AMRLQQILINLAGNAVKFTDAGEIHVRVAVLETR------GDELVL----EFSVRDTGIG 944
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGF-QSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+ ++ + + D GF Q++AS GGS G+
Sbjct: 945 --------------IAPEQLERIFD--GFAQADASTARRY---GGS------------GL 973
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +S + V M Q ++ + R G T F F
Sbjct: 974 GLAIS-RRLVSMMGGQLEADSQRGSGST-----------------------------FRF 1003
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
T V + Y D+ Q + GL+ ++VD+ + L LG V+ ++
Sbjct: 1004 TIVCQRDPAYHPTDVLQKMT--------GLRCLIVDDHDGARSTCANMLQSLGWQVRQAA 1055
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCW----ISGEDSGFNAQLLDWKPNGHVFKL 789
S + A A + D+IL++ W + G + + LD P
Sbjct: 1056 SGRAALELAS--------RASYDVILLD---WRMPDLDGRQTAERLRCLDLTPT------ 1098
Query: 790 PKLILLATNISKDEC---DKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
P LI L +EC +A+ F D + KPL AS + + ++ + A
Sbjct: 1099 PILIALTAGSGSEECALLQEAQPALF-DGAVSKPLTASALYDVVAELRLGASPTAAPE-- 1155
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-HCF 905
P+G+ G L G ++L+V+DN +N+ VA L GATV A AA+ + +
Sbjct: 1156 PHGA----GQLAGLRLLLVEDNAINQQVARELLCSEGATVVVANDGLAAVAMVTGKDDAY 1211
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
DA MD+QMP MDG+ ATR IRQ AN LPI+A+TA+ +
Sbjct: 1212 DAVLMDVQMPGMDGYSATRAIRQRADLAN--------------------LPIIAITANAM 1251
Query: 966 HATFDECLKCGMDGYVSKPFE 986
+ E L GM+ +V KPF+
Sbjct: 1252 ASDRAEALAAGMNDHVGKPFQ 1272
>gi|406889193|gb|EKD35451.1| hypothetical protein ACD_75C01906G0001, partial [uncultured
bacterium]
Length = 770
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 176/620 (28%), Positives = 279/620 (45%), Gaps = 117/620 (18%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+ GA I ++++ + K AEAA+ AKS FLA +SHEIRTPMN I+GM L L T
Sbjct: 257 VIGANYDITELKNYESNLHIAKEAAEAANTAKSDFLARMSHEIRTPMNAIIGMTHLALQT 316
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
DL++ QRDY + A +L+ +IN++LD +KIEA K+ELE + F+L +L+ + ++F+
Sbjct: 317 DLTAKQRDYIKKAHGSAISLLDIINDILDFSKIEAGKMELENIDFSLDEVLEQLSNVFAM 376
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
K+ K IEL + V VP F+ GDP R RQI+ NL GN++KFT+ G + + ++ +
Sbjct: 377 KAAEKNIELLIHVDPDVPTFLRGDPLRLRQILINLTGNALKFTQAGEVVISIN-----QL 431
Query: 531 KTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASII 590
++D + L + G+ S T + ADG + K+ G ++
Sbjct: 432 ESDGQKIRLQFAVADTGIGMSETQLAKLFNSFSQADGSTTR---KYGGTGLGLVICKRLV 488
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
NMM +CVE Q DS
Sbjct: 489 NMMQGE---------ICVES------------------QLDS------------------ 503
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
GSTF F+A+F + E+ +P +GL+ ++VD+
Sbjct: 504 -----------------GSTFHFSALFSTSSRSLKEEFP------IPDWMQGLRTLIVDD 540
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
V + +Y L S SI A+S + ++ L+ D + G D
Sbjct: 541 SVVSRRILRYALE------SFSMSIATANSGEEAIAAVADAPADNPYRLILMDMEMVGMD 594
Query: 771 SGFNA--QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
G A Q+L P + PK+I++ T +++ K ++KP+ + +
Sbjct: 595 -GIEASRQILADAPAD---RCPKIIMV-TAYGQEKVAKEAVYAGIQGFLVKPVSKAALFD 649
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLR---GKKILVVDDNGVNRMVAAGALKKFGAT 885
+ + + RQA P+ S + L R G K+L+++DN +N+ VA L++
Sbjct: 650 AIMECFGFVSPRQA--CTPHDQSALE-LTRPIWGSKVLLIEDNAINQQVATEYLEQACIQ 706
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V A + + L FD MDIQMPEMDG+ ATR IR+
Sbjct: 707 VTVADNGAKGV-ALAESGDFDLVLMDIQMPEMDGYTATRLIRE----------------- 748
Query: 946 GTAKRDELHLPILAMTADVI 965
++ LPI+AMTA+ +
Sbjct: 749 ----HGKVTLPIIAMTANAM 764
>gi|424918579|ref|ZP_18341943.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392854755|gb|EJB07276.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 1127
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 183/656 (27%), Positives = 288/656 (43%), Gaps = 138/656 (21%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 576 ELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 635
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 636 GNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 695
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V + GG
Sbjct: 696 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFE--------------MAGG--- 738
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G + +T G+ A + +DKF +DA + +
Sbjct: 739 GEIMASIRIEDTGIGIPAEKLESVFDKFSQ-VDASSTRRH-------------------- 777
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ ++A LV+L G ++ S
Sbjct: 778 --EGTGLGLAITA------------------------------GLVDLFGGYLNVESEWG 805
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F+ F + + + LP +G + +VVD+ V + L+ G
Sbjct: 806 KGSVFTVNLPFAVAAARL-------EPKPLPINVQGARILVVDDNDVNRRILTEQLSLWG 858
Query: 727 I----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ + + A G+T D PD ++G D A+ L
Sbjct: 859 FDGVAAEGGGTGLAILEAAADLGITVDAVVLDYHMPD---------MNGADV---ARRL- 905
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ + +LP + L + +IS E + A G A +MKP RA+++ + +V+
Sbjct: 906 -RADRRFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVVRASRV 962
Query: 840 RQAGRG-------------VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT- 885
+QA Q +LV +DN VN++V L+ G +
Sbjct: 963 KQASEAEIARLQAEAAAPVPAPAPLTQQRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSF 1022
Query: 886 --VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
V+ A AA ++ H MD+ MP M+G +AT+ IR+ E
Sbjct: 1023 LVVDNGEEAVAAWER----HRPRIIMMDVSMPVMNGHQATQTIREREK------------ 1066
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
G R +PI+ +TA + + + CL GMD Y+SKP E L ++ ++ +
Sbjct: 1067 --GQGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWLR 1116
>gi|334125404|ref|ZP_08499393.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
gi|333386867|gb|EGK58071.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
Length = 919
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 181/629 (28%), Positives = 290/629 (46%), Gaps = 130/629 (20%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L ++L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V + +L N + V
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILV------------EKRSLSNNKVQIEVQIR 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
TG G+ D + F+ Q++ASI +GG T
Sbjct: 451 DTG-----IGIPERDQTRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQK------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D P KG++ V+ AA Q L+ L
Sbjct: 513 WF---------HINLDLNPNVQTDGPVTGCLKGMRLAYVEPN---AAAAQCTLDVLS--- 557
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S+ ++ S + L + D + DI+L+ +GE + +L +
Sbjct: 558 --STPLEVVYSPTFSAL--ANDHY--DILLLGIPVTFTGELTMQQERL------AKAASM 605
Query: 790 PKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
+LLA ++ ++ K G A ++KPL A+ + L TE R + +P
Sbjct: 606 TDYLLLALPCHAQINAEELKNDGAA-ACLLKPLTATRLLPAL-----TEYCRLTHQSLPL 659
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
+ H+ + ++ VDDN N + L+ VE S A+++ + FD
Sbjct: 660 ENDEHKLPM---TVMAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVEQAKQMQ-FDLI 715
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MDIQMP MDG A IRQ+ + P++A+TA +
Sbjct: 716 LMDIQMPGMDGIRACELIRQLPHQQQT--------------------PVIAVTAHAMAGQ 755
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKF 997
++ L GM+ Y++KP +EE L+ L ++
Sbjct: 756 KEKLLGAGMNDYLAKPIDEEKLHSLLLRY 784
>gi|428201665|ref|YP_007080254.1| PAS domain-containing protein [Pleurocapsa sp. PCC 7327]
gi|427979097|gb|AFY76697.1| PAS domain S-box [Pleurocapsa sp. PCC 7327]
Length = 1444
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 184/647 (28%), Positives = 293/647 (45%), Gaps = 140/647 (21%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S+FLAT+SHEIRTPMN ++GM LLLDTDLSS QR +A+T + +AL+ ++N++LD +K
Sbjct: 768 SEFLATMSHEIRTPMNAVIGMAGLLLDTDLSSQQRQFAETIRSSSEALLVILNDILDFSK 827
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
IE+ KLELEA F +++ +++ L+L K+ K +++ + +VP ++GD R RQI+
Sbjct: 828 IESGKLELEAYPFEVQSCVEEALNLIVPKAVAKNLQVIYQIDPQVPRAIVGDITRVRQIL 887
Query: 503 TNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQF---NTL 559
NL+GN+VKFT+ G I V V +L+N + + QF +T
Sbjct: 888 VNLLGNAVKFTDAGEIRVAV-------------TASLVNKAEQ-----AYEIQFMVKDTG 929
Query: 560 SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
G+ R + F Q+NAS+ GG TG+G+ +
Sbjct: 930 IGIAPQQQRFLFQSFS--------QANASVTR---KYGG------------TGLGLAICK 966
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
+ M S GT G + + L R Q ++ + VGSTF FT + K
Sbjct: 967 RLAKMM-----GGSIWMESHGTVAGAAPPRWL----RSQENWDTISTVGSTFYFT-IAAK 1016
Query: 680 CKEYVFEDIKQSKSEDLPPG-----FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
+ S L P KG + ++VD+ PV + G++ + +
Sbjct: 1017 AAPF---------SSTLTPSDCQAQLKGKRILIVDDNPVNRELLTQLTQSWGMLPRAA-- 1065
Query: 735 IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---KPNG------- 784
D+ S A CW+ +S F+ +LD K NG
Sbjct: 1066 --DSGSQAL--------------------CWLRQGES-FDLAILDLQMPKMNGIELAESI 1102
Query: 785 ----HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS----T 836
LP ++L A N+S E K+ F + P++ S + L Q+ +
Sbjct: 1103 QALPECRALPLMMLTAVNLSPKELQKSTPVQFV-AWLQNPVKKSQLYDALVQIFWQKSVS 1161
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGK------KILVVDDNGVNRMVAAGALKKFGATVECAA 890
E + + SS +Q + +IL+ +DN +N+ VA L+K G + A
Sbjct: 1162 ETSASSEMAIAQTSSSNQKIETTVSKPFPLRILLAEDNSINQQVALLILQKLGYRADVAG 1221
Query: 891 SAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ A+ L Q+P +D MD++MPEMDG A +RI + E K +++
Sbjct: 1222 NGWEAIRALRQAP--YDVVLMDVEMPEMDGLTAAQRIAE-EWKPSQRPW----------- 1267
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
++A+TA + ++CL GM+ Y+SKP E L + L K
Sbjct: 1268 -------LIAVTAYAMKGDREKCLAVGMNDYISKPIREIELLQALEK 1307
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 842 AGRGVPNGSSFH----QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
A + P S+ Q L+GK+IL+VDDN VNR + + +G A S AL
Sbjct: 1014 AAKAAPFSSTLTPSDCQAQLKGKRILIVDDNPVNRELLTQLTQSWGMLPRAADSGSQALC 1073
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQM-ESKANEQMMNGGSSVDGTAKRDELHLP 956
L+ FD +D+QMP+M+G E I+ + E +A LP
Sbjct: 1074 WLRQGESFDLAILDLQMPKMNGIELAESIQALPECRA---------------------LP 1112
Query: 957 ILAMTA-DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
++ +TA ++ + ++ P ++ LY L + F K +S
Sbjct: 1113 LMMLTAVNLSPKELQKSTPVQFVAWLQNPVKKSQLYDALVQIFWQKSVS 1161
>gi|410644220|ref|ZP_11354702.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica NO2]
gi|410136068|dbj|GAC03101.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica NO2]
Length = 1172
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 184/641 (28%), Positives = 298/641 (46%), Gaps = 115/641 (17%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D +M++ + +A+ A KS+FLA +SHEIRTP+NGI+GM LLL T+L+ QR +A+
Sbjct: 642 DITEMKKAEEQAKEASRTKSEFLANMSHEIRTPINGIVGMNDLLLATELTKKQRHFAELV 701
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
++L+ LIN++LD +KIEA KL +E++ F+L +L +++ F+ +++ KG+EL +
Sbjct: 702 HSSSESLLLLINDILDFSKIEAGKLSIESIDFDLHLLLGNIIDTFASRAQQKGLELIFDL 761
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG 543
VP+++ DPGR RQ++ NL+GN++KFT G I +++ L+G
Sbjct: 762 HPDVPQWIASDPGRIRQVLNNLLGNAIKFTHHGEIVLRI----------------TLDGE 805
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+ C TG G+ + + KF Q ++S GG
Sbjct: 806 KQLKFCIIDTG-----IGIHEDNQAALFSKF--------MQVDSSTTRNF---GG----- 844
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
TG+G+ +S Q S GGT +G+S S
Sbjct: 845 -------TGLGLAISKQ-------------LSELLGGT-VGVS----------------S 867
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
+ Q GSTF FT F + + P + L+ +VVD+ P +A+ L
Sbjct: 868 QWQQGSTFWFTIALE-----AFSRGHGTSTPWFPELDRSLQVLVVDDNPTLSAILGQWLT 922
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD--WK 781
I V + ++AS K + D+ L++ G N L +
Sbjct: 923 TQNIQVYQA---QNASLALKRLREQQLSSAKIDVALIDTSL------PGINGIELTKAIR 973
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTV--IMKPLRASMIAACLQQVLSTENK 839
N KL +IL+ + D + A + V I KP++ + + A LS+ +
Sbjct: 974 SNDQFAKL-HVILMTPH---DWLETGTANQLSGPVSYIAKPVKPASLGAAFSGALSSNSP 1029
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+A + P+ ++ + IL+V+DN +N+ V LKK +V+ A + + A+ L
Sbjct: 1030 AKAVQEEPDVKLLNK-YFQTPNILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAIHTL 1088
Query: 900 Q-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ + FD MD QMP MDG+EA+R+IR N N S+ LPI+
Sbjct: 1089 EDADKGFDLILMDCQMPIMDGYEASRKIR------NNLHSNYAST-----------LPII 1131
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
A+TA+ + + CL GM+ Y+SKP L EL K+ K
Sbjct: 1132 ALTANAMKGDREACLSAGMNAYLSKPIILAELKTELQKWLK 1172
>gi|222082058|ref|YP_002541423.1| two-component sensor histidine kinase/response regulator hybrid
protein [Agrobacterium radiobacter K84]
gi|221726737|gb|ACM29826.1| two-component sensor histidine kinase/response regulator hybrid
protein [Agrobacterium radiobacter K84]
Length = 949
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 180/659 (27%), Positives = 294/659 (44%), Gaps = 138/659 (20%)
Query: 357 HIVKVEDDFHKMQELKVR-AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
H++ V+++ E++ R AE A+ AKS FLA +SHEIRTPMN ILG LL T+L++
Sbjct: 177 HVLTVQNE---TLEVRTREAEQANAAKSLFLANMSHEIRTPMNAILGFSHLLGRTELTAR 233
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
Q DY + L++L+ ++LD +KIEA K+ LE F+ RA+++ + L + K++ K
Sbjct: 234 QHDYVTKIRGASDRLLSLLKDILDFSKIEAGKMALEKASFDPRAMIERTMELSTLKAQEK 293
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
GI + V +P + GD R Q++ NLV N++KFT G + +K++L E D++
Sbjct: 294 GIAIGWQVDPAIPAMLRGDELRLSQVVLNLVSNAIKFTSSGEVTLKLNLREH----QDSR 349
Query: 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS 595
EGV R +T G+ + +D F Q+++S
Sbjct: 350 -------CVIEGVVR------DTGLGMSSGQVARLFDSFT--------QADSSTTRRF-- 386
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
GG TG+G+ +S Q LV LM
Sbjct: 387 -GG------------TGLGLAISRQ------------------------------LVALM 403
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G IS S+ GSTF+FT + + ++ ++ E F L+ +VVD+
Sbjct: 404 DGGISVESKEGHGSTFTFTVMLEE------DETRRHTVEQKSDAFANLRVLVVDDNEGSR 457
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ Q I+ ++++S A+ GL + E F+
Sbjct: 458 EILQGFCEAWSIIPELAAS-------AQEGLAAISSAI--------------AEHRPFDL 496
Query: 776 QLLDWKPNG----HVFKL----------PKLILLATNISKDECDKAKAGGFADTVIMKPL 821
LLDWK G K+ P++I+++ + +A+ G D + KP+
Sbjct: 497 VLLDWKMPGMNGLEAIKVLQSILPSEDWPRIIMISAYGREQAVGEAETLGI-DGFLSKPV 555
Query: 822 RASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
AS + L + + ++ + + + LRG +IL+V+DN +N +A L
Sbjct: 556 SASSLFDMLTWIFAHTDQVPS-KNTAEHTPMVAPALRGARILLVEDNEINLELAQIILTD 614
Query: 882 FGATVECAASAKAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
G V+ A + A+ K L++ +DA MD+QMPE+ G +ATR IR
Sbjct: 615 GGLNVDTAENGLIAVRKVLEAGDRYDAVLMDLQMPELGGIDATREIR------------- 661
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
A + LPI+AMTA A CL GM+ ++SKP + L L+++ +
Sbjct: 662 -------AGLGDQWLPIIAMTAHAYEAERQNCLAAGMNDHISKPLDPAQLLAALSRWIR 713
>gi|428319240|ref|YP_007117122.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242920|gb|AFZ08706.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 1138
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 191/664 (28%), Positives = 289/664 (43%), Gaps = 139/664 (20%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
IV V D +++ E + A A KSQFLA +SHEIRTPMNG+L M LLL L QR
Sbjct: 412 IVMVADKINELVEARETALEASRVKSQFLANMSHEIRTPMNGVLAMAQLLLRAPLEQKQR 471
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
D QT + L+ +IN++LD +KIEA ++ LE F+L + L+ V+ + + + KGI
Sbjct: 472 DCIQTIYRSAEHLLNVINDILDFSKIEAGEMRLEKYNFDLDSCLESVIEILAHLAEEKGI 531
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
EL + V VP LVG+S + + V ++L + TD + +
Sbjct: 532 ELNILVDSSVPR--------------KLVGDSGRLKQ-----VLLNLTGNAIKFTD-RGQ 571
Query: 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
L++ ++G N L ADGR
Sbjct: 572 VLVHVTVKQG---------NRL-----ADGR----------------------------- 588
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
++ L+ V DTGIGI Q ++F F Q D S +R YGGTG+GL+I K LVE+M G
Sbjct: 589 --QEARLLFSVRDTGIGISAQGQTKLFQSFSQVDDSPTRPYGGTGLGLAICKQLVEMMGG 646
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
I S G+TF FT KQ E P G K +VV +R A
Sbjct: 647 DIGVRSLLGSGATFWFTVPLE----------KQLPVEPHDPELAGKKLLVVSGSALRRAA 696
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKN---GLT--SSEDKFQPDIILVEKDCWISGEDSG 772
+ G + + +A S KN G++ S E D++LV D + D+
Sbjct: 697 VRSLAQSWGARCDEAETAAEALSWLKNARGGISQHSGEGGKSWDVVLV--DLQMPELDAE 754
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKA---GGFADTVIMKPLRASMIAAC 829
A G V + L + E KA+A GF + +++P+R S +
Sbjct: 755 EFA--------GKVRSTSTVGSLIAMTALREQPKAEALCSHGF-NGYLIEPVRPSRLLET 805
Query: 830 LQQVLSTENKRQAGR----------------GVPNGSSFHQGLLRGKKILVVDDNGVNRM 873
L + + + GR PN S +IL+ +D+ +N+
Sbjct: 806 L--LAAVKGTGYFGRLEAANSCKLPPVNSEYATPNSPS-------SLRILLAEDHPINQQ 856
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
V L G +C + + ALD L + +D MD QMP +DG++ +++R++E
Sbjct: 857 VLVQQLAVLGYQADCVVNGQEALD-LLAKKSYDLVLMDCQMPVLDGYKTAQKLREIE--- 912
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
GS + H ++A+TA + ++CL GMD Y+SKP + + L
Sbjct: 913 -------GS---------DRHTFVMALTAHAMPGEREKCLAAGMDDYLSKPVDLDALAAA 956
Query: 994 LAKF 997
L K+
Sbjct: 957 LKKY 960
>gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
Length = 1236
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 196/643 (30%), Positives = 282/643 (43%), Gaps = 131/643 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI QE++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
VGSTFSFT F +E E + +P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTISFEIAEEAKVEPLV------VPEKLNNLRTLVVDDNPTALQIYS------A 984
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE-DSGFNAQLLD-WKPNG 784
+M + A+S A+ S D D++L++ W+ E D G +D G
Sbjct: 985 LMRDFHFEVDTAASGAEALYKLSRDPI--DLLLLD---WMMPEMDGGDVISAIDTMVAEG 1039
Query: 785 HVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---N 838
+ K P +I++ A + E D A FA V+ KP +AS + + + E N
Sbjct: 1040 RIAKRPIIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPRLN 1095
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
Q VP H GL +L+V+DN +N+ VA LK G V A + + ALD
Sbjct: 1096 VVQPIDEVPVEEGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDI 1150
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ S FDA MDIQMP MDG A R +R+ S LPI+
Sbjct: 1151 IDS-RPFDAVLMDIQMPVMDGLTAARALRERFSADV--------------------LPII 1189
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
AMTA + ++ L GM+ +++KP L+ L+ + K K
Sbjct: 1190 AMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIKHK 1232
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKL-SRDPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGGDVISAIDTMVAEGR------------IAKRP----IIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
Length = 1236
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 196/643 (30%), Positives = 282/643 (43%), Gaps = 131/643 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI QE++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
VGSTFSFT F +E E + +P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTISFEIAEEAKVEPLV------VPEKLNNLRTLVVDDNPTALQIYS------A 984
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE-DSGFNAQLLD-WKPNG 784
+M + A+S A+ S D D++L++ W+ E D G +D G
Sbjct: 985 LMRDFHFEVDTAASGAEALYKLSRDPI--DLLLLD---WMMPEMDGGDVISAIDTMVAEG 1039
Query: 785 HVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---N 838
+ K P +I++ A + E D A FA V+ KP +AS + + + E N
Sbjct: 1040 RIAKRPIIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPRLN 1095
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
Q VP H GL +L+V+DN +N+ VA LK G V A + + ALD
Sbjct: 1096 VVQPIDEVPVEEGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDI 1150
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ S FDA MDIQMP MDG A R +R+ S LPI+
Sbjct: 1151 IDS-RPFDAVLMDIQMPVMDGLTAARALRERFSADV--------------------LPII 1189
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
AMTA + ++ L GM+ +++KP L+ L+ + K K
Sbjct: 1190 AMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIKHK 1232
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKL-SRDPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGGDVISAIDTMVAEGR------------IAKRP----IIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1166
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 173/632 (27%), Positives = 290/632 (45%), Gaps = 116/632 (18%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A++AKS FLA +SHEIRTP+N I+ + L+L T L+S Q +Y + + G+ L+ +I
Sbjct: 429 AEQANLAKSDFLANMSHEIRTPLNAIINLSYLILQTPLTSKQSNYLEKIESAGRTLLGVI 488
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA L L+ V F L ++ +V ++ + +K ++L V+ P ++GD
Sbjct: 489 NDILDYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQMMGD 548
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
P R ++ NL N++KFTE G + ++V DAK + + V +G
Sbjct: 549 PMRLGAVLINLTNNAIKFTEHGEVVIRV----------DAKQQREQHYLLHFSVQDTGI- 597
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
G+ A + + F Q+++SI GG TG+G
Sbjct: 598 ------GISAEQQKRLFQSFS--------QADSSISR---RYGG------------TGLG 628
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +S K LVELM G +S S G+TF FT
Sbjct: 629 LAIS------------------------------KKLVELMGGTLSLQSVVGQGTTFEFT 658
Query: 675 AVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
+ K +++P G++ +VVD+ + + LN + V
Sbjct: 659 IPLQAV---------EIKPDEVPSATSLNGVRVLVVDDNATAREILEEQLNAFHMEV--- 706
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKL 792
AS A + E + P++IL+ D ++G + L + N + ++P++
Sbjct: 707 --CSVASGEAALDVLHHEPR--PELILL--DDQMTGLSGVETVRRLRGQIN--LARIPEV 758
Query: 793 ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL-STENKRQAGRGVPNGSS 851
++L+ + + +A+A G + KP+ S++ L +V ++Q R
Sbjct: 759 LMLSDHGREKVRQEAEALGITH-FMCKPISPSVLLETLLEVRGECLPRKQRSRRPLIHPE 817
Query: 852 FHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909
GL + G ++L+V+DN +N+ +A L G V AAS ++ALD L S FD
Sbjct: 818 LRDGLSAIAGARVLLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVL 877
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MDIQM +MDG+ TR++RQ D K LP++AMTA + +
Sbjct: 878 MDIQMSDMDGYATTRQLRQ----------------DPRFKT----LPVVAMTAHAMVSDR 917
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
++ L+ GM ++ KP E E L+ L ++ K +
Sbjct: 918 EKALQLGMQDHIPKPIEPEQLFAALVQWIKPR 949
>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
gi|451965956|ref|ZP_21919211.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC
105688]
gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
gi|451315205|dbj|GAC64573.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC
105688]
Length = 934
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 178/639 (27%), Positives = 277/639 (43%), Gaps = 149/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G +L T LS+TQ DY T + L+
Sbjct: 277 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLSATQIDYLHTIERSANNLL 336
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN+VLD +K+EA KL LE + F LR +D+V +L + + +KG+EL + V + VPE V
Sbjct: 337 SIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 396
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
LGDP R +Q++TNL+GN++KFTE+G+I +++ E+ + T A + + T G+
Sbjct: 397 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRI---EQRSLNTQAVELEVQVHDTGIGISER 453
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
Q + F+ Q++ASI +GG T
Sbjct: 454 QQSQL--------------FQAFR--------QADASITR---RHGG------------T 476
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ L+ M G I+F S+P GSTF
Sbjct: 477 GLG------------------------------LVITQKLINEMGGDIAFHSQPHKGSTF 506
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPG------FKGLKAVVVDEKPVRAAVTQYHLNRL 725
F I+ + + PP G + ++ PV A T L
Sbjct: 507 WF-------------HIRLELNHNAPPASLPLERLDGQTLLYIESNPVAAQCTLDMLKVT 553
Query: 726 GIMV----KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
+ V + + I D+ DI+L S +L
Sbjct: 554 PLEVTYCPQFAQVIPDSHY---------------DILLFGLPVQTSLTSEHMQEKL---- 594
Query: 782 PNGHVFKLPKLILLA-TNISKDECDKAKAGGFADTVIMKPLRAS-MIAACLQQVLSTENK 839
+L ++LA + + + D KA G + KPL +S ++ A L L
Sbjct: 595 --SRALRLADRVILALPSHTLHDSDTLKARGIR-RCLFKPLASSRLLPALLDNALP---P 648
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN-RMVAAGALKKFGATVECAASAKAALDK 898
R P+G ++ VDDN N +++ A ++ T+ C + +A
Sbjct: 649 RAPQVISPSGDRL------PLTVMAVDDNPANLKLIGALLGEQVQHTLLCHSGEEALAAA 702
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
P D MDIQMPEMDG T R+RQ A H PI+
Sbjct: 703 RDRP--LDIILMDIQMPEMDGIRTTERLRQQPIHA--------------------HTPII 740
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA ++ + L+ GMD Y++KP +E L + L ++
Sbjct: 741 AVTAHALNGERERLLRAGMDDYLAKPIDENRLRQLLTRY 779
>gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
Length = 1320
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 187/638 (29%), Positives = 290/638 (45%), Gaps = 123/638 (19%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++E K A+A AK FLA +SHEIRTPMN ILGM L L+T+L +QR Y
Sbjct: 584 ELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKY------- 636
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+ INE AK NL I++D+L ++ +E F D+
Sbjct: 637 ----LTRINE---SAK-------------NLLGIINDILDFSKIEAGKLSVESIDFSLDE 676
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
V E +TN++ S K E+G F ++ D + L G
Sbjct: 677 VFEN-----------LTNVI--SFKAQEKGIEF---------LLDIDPRVPVGLVGDP-- 712
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLM 605
R G N L G +A F I +++M + S+DVTL
Sbjct: 713 --LRLGQVLVN-LCG-----------------NAVKFTEKGEILVSVMPESQSSDDVTLR 752
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V+DTGIGI +F F QAD+S +R +GGTG+GLSISK LVELM GQ+S S
Sbjct: 753 FSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAV 812
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
+GSTF+FT G +E DI + S G G +A++VD+ +
Sbjct: 813 GMGSTFTFTIHCG-LQEAKMRDIAKPIS-----GLAGKRALIVDDND----------SAR 856
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
I++ + S+++ + NG + ++ Q +V D + G + +LL
Sbjct: 857 NILMTLLSAMQFDAKAVSNGFEALDELRQSTFDMVFVDWNMPGMNG---LELLQTAHQER 913
Query: 786 VFKLPKLILLAT---NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ K L+ IS DE + D++I+KP+ S + + E+ ++
Sbjct: 914 LLAETKNFLVTAYGREISMDE----NSSKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRS 969
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
++F + + G+ +L+V+DN VN+ VA G L + A + K A++ L++
Sbjct: 970 S----TTATFEKPVFDGQTLLLVEDNEVNQEVAIGLLNGTNLNIITADNGKLAIEALEN- 1024
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H D MD+QMP MDG AT+ IR+ A LPI+AMTA
Sbjct: 1025 HPIDLVLMDMQMPVMDGITATKAIRERAEWAT--------------------LPIVAMTA 1064
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ + + + C + GM+ +V+KP NLY+ L+++ +
Sbjct: 1065 NAMQSDVERCHEAGMNDHVAKPINVHNLYQVLSQYLSA 1102
>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 415
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 181/341 (53%), Gaps = 58/341 (17%)
Query: 341 FVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVR-AEAADVA------KSQFLATVSHEI 393
F++ L +L ++V+ + +++E + +A D A KS+FLAT+SHEI
Sbjct: 109 FIVKPLNAMLLTHRIRYMVRADQVLQELRESQATLTQARDAAIEGARLKSEFLATMSHEI 168
Query: 394 RTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV 453
RTPMNG+LGM LLDT L++ Q D AQT + G AL+ +IN++LD +KIE+ KL LE +
Sbjct: 169 RTPMNGVLGMTDWLLDTPLTAEQLDCAQTIRSSGDALLVIINDILDFSKIESGKLSLELL 228
Query: 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513
F+L LD V++LF E+++ KG+ L +++ VP + GDP R +QI++NL+ N++KF+
Sbjct: 229 DFDLSTFLDRVMALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLANAIKFS 288
Query: 514 ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDK 573
E G + V V L +R + G E R G
Sbjct: 289 EHGSVSVLVELDQRPAEQ-----------GLEFPATRYG--------------------- 316
Query: 574 FKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSS 633
+ Q + I S+ G IGI SA ++F PF+QAD S
Sbjct: 317 -----EPSAQQEQVTHIRFSVSDNG--------------IGIEPSAFSKLFQPFVQADGS 357
Query: 634 TSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
T+R YGGTG+GL+I K LVELM G I S P GS F FT
Sbjct: 358 TTRKYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFT 398
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF-DACFMDIQMPE 916
R L+ DD+ + RM A AL++ G VE A + A + Q C D +D+ MP
Sbjct: 8 RAPYALITDDDIIIRMFAREALEQAGWVVEEAQNGSEACELFQ--KCPPDVVLLDVMMPG 65
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDGF +R++ GG H PIL MT + + G
Sbjct: 66 MDGFATCAALRRLP---------GGE-----------HTPILIMTGLDDFESITKAYDAG 105
Query: 977 MDGYVSKPF 985
++ KP
Sbjct: 106 ATDFIVKPL 114
>gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
Length = 1328
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 187/638 (29%), Positives = 290/638 (45%), Gaps = 123/638 (19%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++E K A+A AK FLA +SHEIRTPMN ILGM L L+T+L +QR Y
Sbjct: 592 ELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKY------- 644
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+ INE AK NL I++D+L ++ +E F D+
Sbjct: 645 ----LTRINE---SAK-------------NLLGIINDILDFSKIEAGKLSVESIDFSLDE 684
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
V E +TN++ S K E+G F ++ D + L G
Sbjct: 685 VFEN-----------LTNVI--SFKAQEKGIEF---------LLDIDPRVPVGLVGDP-- 720
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLM 605
R G N L G +A F I +++M + S+DVTL
Sbjct: 721 --LRLGQVLVN-LCG-----------------NAVKFTEKGEILVSVMPESQSSDDVTLR 760
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V+DTGIGI +F F QAD+S +R +GGTG+GLSISK LVELM GQ+S S
Sbjct: 761 FSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAV 820
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
+GSTF+FT G +E DI + S G G +A++VD+ +
Sbjct: 821 GMGSTFTFTIHCG-LQEAKMRDIAKPIS-----GLAGKRALIVDDND----------SAR 864
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
I++ + S+++ + NG + ++ Q +V D + G + +LL
Sbjct: 865 NILMTLLSAMQFDAKAVSNGFEALDELRQSTFDMVFVDWNMPGMNG---LELLQTAHQER 921
Query: 786 VFKLPKLILLAT---NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ K L+ IS DE + D++I+KP+ S + + E+ ++
Sbjct: 922 LLAETKNFLVTAYGREISMDE----NSSKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRS 977
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
++F + + G+ +L+V+DN VN+ VA G L + A + K A++ L++
Sbjct: 978 S----TTATFEKPVFDGQTLLLVEDNEVNQEVAIGLLNGTNLNIITADNGKLAIEALEN- 1032
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H D MD+QMP MDG AT+ IR+ A LPI+AMTA
Sbjct: 1033 HPIDLVLMDMQMPVMDGITATKAIRERAEWAT--------------------LPIVAMTA 1072
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ + + + C + GM+ +V+KP NLY+ L+++ +
Sbjct: 1073 NAMQSDVERCHEAGMNDHVAKPINVHNLYQVLSQYLSA 1110
>gi|429094957|ref|ZP_19157463.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 1210]
gi|426739907|emb|CCJ83576.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 1210]
Length = 919
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 182/641 (28%), Positives = 277/641 (43%), Gaps = 154/641 (24%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL V V VP+ V
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTVSVRHDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFT+ G+I + V + + N + V
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVV------------EKRAISNNKVQIEVQIR 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
TG G+ D + F+ Q++ASI +GG T
Sbjct: 451 DTG-----IGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV M G ISF S+P GSTF
Sbjct: 483 GLGLVITQK------------------------------LVNEMGGDISFHSQPHRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
F + + + D+ G++ V++ A T+ L+ + V
Sbjct: 513 WFHISLDLNPNALVD----RHATDM---LAGMRLAYVEKNEAAAKSTRDLLDNTPLTVVY 565
Query: 732 SSSIKD------------ASSTAKNGLTSSEDKFQPDIILVEKDCWISGE--DSGFNAQL 777
S + A T + LT D+ L DC I + NA++
Sbjct: 566 SPELATLPQAHYDILLYAAPVTDREPLTMRHDQLARAATLT--DCLILALPCHAQINAEM 623
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
L K G A ++KP+ A+ + L E
Sbjct: 624 L--KKEG----------------------------ASACLLKPVTATRLLPLL-----LE 648
Query: 838 NKRQA-GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+ RQ R +P GS QG L ++ VDDN N + L+ V S A+
Sbjct: 649 HCRQIHARELPEGS---QGKL-AMTVMAVDDNPANLKLIGALLEDIVQHVVLCDSGHQAV 704
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
++ + FD MDIQMP+MDG A IR++ + H P
Sbjct: 705 ER-ATLQPFDIILMDIQMPDMDGIHACELIRKLPQQQ--------------------HTP 743
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
I+A+TA + ++ L GM+ Y++KP EEE L L ++
Sbjct: 744 IIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRALLLRY 784
>gi|407695376|ref|YP_006820164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain-containing protein [Alcanivorax dieselolei B5]
gi|407252714|gb|AFT69821.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax dieselolei B5]
Length = 904
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 188/665 (28%), Positives = 281/665 (42%), Gaps = 165/665 (24%)
Query: 356 IHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
I I +E D + + LK A KS+FLA +SHEIRTP+NGI+G LL +DLS
Sbjct: 248 IEIQNIELDMARKEALK-----ASQIKSEFLANMSHEIRTPLNGIIGFTRLLERSDLSPR 302
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
Q+DY T + +AL+++IN++LD +KIEA +L LE + NL I++DV ++ + ++ K
Sbjct: 303 QQDYLNTIRKSAEALLSIINDILDFSKIEAGRLSLEHIPLNLHDIIEDVQTMLAPLAQEK 362
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER----TMVK 531
G+E A + +P +LGDP R RQ++TNLV N++KFTE G + V+ L E+ +VK
Sbjct: 363 GLEQAAIIYSDLPSHLLGDPLRIRQVLTNLVSNAIKFTEHGSVVVRAMLEEQKGAEAVVK 422
Query: 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIIN 591
D G E V R G FN + + + R +
Sbjct: 423 ITVTDT---GNGLSEDVQR---GLFNAFTQADQSASRRA--------------------- 455
Query: 592 MMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651
GG TG+G+ +S K L
Sbjct: 456 -----GG------------TGLGLAIS------------------------------KRL 468
Query: 652 VELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711
VE M G+I S P GSTF FT +C+ V + PP +V + E
Sbjct: 469 VEGMGGEIGIDSTPSQGSTFWFTL---RCERDV------GTRPESPPAELARLSVTLVEA 519
Query: 712 PVRAAVTQYHL---NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
A + YH+ R+ I + D+ A+N L E D ++ G
Sbjct: 520 SEYARLGLYHMFSGWRMRISEIQGMDVLDSHLAAEN--------------LPETDFYVVG 565
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKL--------ILLATN---ISKDECDKAKAGGFADTVI 817
+ + P G + +L ++LA N ++ + D+
Sbjct: 566 VPA------MTRDPVGLAPLIQRLARHSQAPVLVLANNGDYLADELADQPHCRVLGKPAT 619
Query: 818 MKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRG----KKILVVDDNGVNRM 873
+ LR +++ G+ S HQ LL ++LVVDD+ N
Sbjct: 620 RRRLRDALLELS---------------GLGGDRSRHQELLTPLGYHPRVLVVDDHPGNLK 664
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
+A L++ GA V A + AL+ S FD FMD+ MP MDG E T +R+ E
Sbjct: 665 LARIFLEELGAEVVPCAGGQEALEAF-SQGTFDLIFMDVHMPGMDGLETTLALRERE--- 720
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
G ++R PI+A+TA + L GMD Y+SKP EE L
Sbjct: 721 ------------GESQRT----PIIALTAHALENEKRALLAAGMDDYLSKPITEEQLRHT 764
Query: 994 LAKFF 998
L ++
Sbjct: 765 LERWV 769
>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
Length = 811
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 182/633 (28%), Positives = 285/633 (45%), Gaps = 138/633 (21%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 176 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 235
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 236 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 295
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 296 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVE--KRALSNTKVQIEVQIR---------- 343
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 344 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 375
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 376 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 405
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
F V D S+ G + V+ A T L+ + V
Sbjct: 406 WFHISL-DLNPNVLVDRSTSRC------LAGKRLAYVEPNATAAQCTLDILSETPLEVIY 458
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILV------EKDCWISGEDSGFNAQLLDWKPNGH 785
S S +GL +D + DI+L+ + + E A + D+
Sbjct: 459 SPSF--------SGL--PKDHY--DILLLGIPVTFREPLTMQHERLASAAAMTDF----- 501
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
L+L ++ +K K GG A ++KPL ++ + L + + A +
Sbjct: 502 ------LLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQLNHS--ADQP 552
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVN-RMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
+P+ S ++ VDDN N +++ A K V C S A+D+ +
Sbjct: 553 LPDESKI------AMTVMAVDDNPANLKLIGALLEDKVQHVVLC-DSGHQAVDRARQMQ- 604
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
FD MDIQMP+MDG A I Q+ + P++A+TA
Sbjct: 605 FDLILMDIQMPDMDGIRACELIHQLPHQQ--------------------QTPVIAVTAHA 644
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ ++ L GM+ Y++KP EE+ L+ L ++
Sbjct: 645 MAGQKEKLLSAGMNDYLAKPIEEDKLHNLLLRY 677
>gi|413961701|ref|ZP_11400929.1| hypothetical protein BURK_017320 [Burkholderia sp. SJ98]
gi|413930573|gb|EKS69860.1| hypothetical protein BURK_017320 [Burkholderia sp. SJ98]
Length = 1305
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 180/618 (29%), Positives = 278/618 (44%), Gaps = 131/618 (21%)
Query: 389 VSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448
+SHEIRTPMN +LGML L+ T L++ Q+DY A+ ++L+ L+N++LD +KIEA KL
Sbjct: 586 MSHEIRTPMNAVLGMLHLVQLTALNARQQDYVSKAETAARSLLNLLNDILDYSKIEAGKL 645
Query: 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGN 508
+L++ F +++++ + S K +E+ + VP T LVG+
Sbjct: 646 QLDSHPFEPEKLMEELGIVLSGNQGAKDVEVLFDLDPSVP--------------TVLVGD 691
Query: 509 SVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGR 568
S + + V ++LA + T A GQ
Sbjct: 692 SFRLQQ-----VLINLAGNALKFTSA-------------------GQIVV---------- 717
Query: 569 NSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
S + DA G + V L + V D+GIGI + ER+F F
Sbjct: 718 -SVHRLDDSPDASG-----------------DAVRLRITVSDSGIGISEAQLERIFEGFT 759
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
QA++STSR YGG+G+GL ISK LV +M GQ+ SR GS F F G
Sbjct: 760 QAEASTSRRYGGSGLGLVISKRLVAMMGGQLEVESRVGEGSRFWFDITLGVETASALTHD 819
Query: 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTS 748
+ + E G + ++ D+ + + + LG + +S ++A
Sbjct: 820 ESANLE------HGARILIADDNAIAGEIMARTVRSLGWRADIVTSGREA---------- 863
Query: 749 SEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-P--NG-------HVFK---LPKLILL 795
VE+ + D+ ++ LLDW+ P +G H K P L+LL
Sbjct: 864 -----------VERIGEAALNDAPYDIALLDWRMPELDGLNAARQIHAMKGRAAPPLVLL 912
Query: 796 ATNISKDECDKAKAGGFADTV--IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH 853
T ++ +++ GG A + KP+ +AA ++ L + + R V +
Sbjct: 913 VTAFGREVLKESQEGGDAPFAGFLTKPVTPKQLAAAIRAALPRDT--ETTRPVTPLPTMK 970
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH-CFDACFMDI 912
L G +LVV+DN +NR VA G L GA+V A S + +D++ + + CFDA MD+
Sbjct: 971 ARRLAGLALLVVEDNALNRQVAEGVLLAEGASVTLAQSGREGVDRVIAANACFDAVLMDV 1030
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMP++DG EATR IR DG LP++AMTA+ A D C
Sbjct: 1031 QMPDLDGLEATRLIR----------------ADGRFA----ALPVIAMTANASGADRDAC 1070
Query: 973 LKCGMDGYVSKPFEEENL 990
+ GM+ +V KP + E L
Sbjct: 1071 IAAGMNEHVGKPIDVERL 1088
>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
BAA-895]
gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
Length = 918
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 180/640 (28%), Positives = 282/640 (44%), Gaps = 152/640 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEIQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D PP G + V+ A T L+ + V
Sbjct: 513 WF---------HINLDLNPNVISDAPPTRCLVGKRLAYVEPNATAAQCTLDMLSDTPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL-LDWKPNGHVFK 788
S + D + DI+L+ FN L + +
Sbjct: 564 IYSPTFS----------ALPLDHY--DILLISVPV-------TFNEPLTMQQERLAKAAA 604
Query: 789 LPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQ----------VLSTE 837
+ +LLA ++ +K K GG A ++KPL ++ + L + +L+ E
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCHLNQHVEPLLTDE 663
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
NK ++ VDDN N + L+ VE S A++
Sbjct: 664 NK------------------IAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVE 705
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
+ + FD MDIQMP+MDG A I Q+ + P+
Sbjct: 706 RAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT--------------------PV 744
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 IAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHSLLLRY 784
>gi|440684403|ref|YP_007159198.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428681522|gb|AFZ60288.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1382
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 165/311 (53%), Gaps = 59/311 (18%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+++ K AE A++ K +FLAT+SHEIRTPMN ++GM LLLDT L+ Q ++A+ +
Sbjct: 709 EQLKSAKEEAEIANLTKGEFLATMSHEIRTPMNAVIGMTGLLLDTQLTPQQLEFAEIIRN 768
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G A++ LIN++LD +KIE+ KLE+E +FNLR L++ L L + K+ KG+ELA +
Sbjct: 769 SGDAMLTLINDILDFSKIESGKLEIEEQIFNLRTCLEESLDLVAPKASEKGLELAYLMYP 828
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+ E + GD R RQI+ NL+ N++KFT G + + V + KD
Sbjct: 829 ETYEVISGDVTRLRQILVNLLSNAIKFTNSGEVILS--------VTSQIKD--------- 871
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
QS++ I S S+ +
Sbjct: 872 --------------------------------------QSDSEFI----SQQNSQLYEIK 889
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V+DTGIGIP R+F PF Q D+ST+RHYGGTG+GL ISK L ELM G++ S
Sbjct: 890 FTVKDTGIGIPEDKMHRLFKPFSQVDASTTRHYGGTGLGLVISKRLTELMGGKMWVESTV 949
Query: 666 QVGSTFSFTAV 676
GS F FT V
Sbjct: 950 GQGSNFIFTIV 960
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 20/135 (14%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KILV +DN VN+ VA L++ G + AA+ L L+ +D MD+QMPEMDG
Sbjct: 1131 KILVAEDNVVNQKVAINILQRLGYRADVAANGLEVLVALRR-QSYDVVLMDLQMPEMDGL 1189
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
ATR+I + +KR I+AMTA+ + ++CL GM+ Y
Sbjct: 1190 TATRQIYKEWP---------------LSKRPW----IIAMTANAMQGDREKCLAAGMNDY 1230
Query: 981 VSKPFEEENLYRELA 995
+KP E L + L+
Sbjct: 1231 TTKPIRIEELTKALS 1245
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
H + K++L+VDDN NR + FG AAS K AL LQ FD +D+
Sbjct: 975 HHHSIHNKRLLIVDDNINNRQALILQSQSFGMVGVSAASGKEALKYLQEQQ-FDIAILDM 1033
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
QMPEMDG IR++ + + L L +L D T +
Sbjct: 1034 QMPEMDGLTLASEIRKLNNC------------------ERLPLVMLTSIGDGQSNTNYQN 1075
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKS 1000
L Y++KP ++ NL L K+
Sbjct: 1076 LNLEFVAYLTKPIKKANLLNILINISKN 1103
>gi|400756572|ref|NP_952977.2| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter sulfurreducens PCA]
gi|409912455|ref|YP_006890920.1| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter sulfurreducens KN400]
gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter sulfurreducens KN400]
gi|399107883|gb|AAR35304.2| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter sulfurreducens PCA]
Length = 810
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 154/528 (29%), Positives = 245/528 (46%), Gaps = 103/528 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E + + K A++A +KS+FLA VSHEIRTPMNG+LGM++LLL+TDL + QR+Y
Sbjct: 281 ELERAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDLQAKQREY 340
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+ + G+ L+ +IN++LD ++IE+ KL++E + F R +++++ +++ E++R KG+ L
Sbjct: 341 AEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFL 400
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
++ +VP+ +LGD R RQ++ NL+ N+VKFT +G I + V
Sbjct: 401 EYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVR---------------- 444
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
G E GVCR
Sbjct: 445 --GSVEGGVCR------------------------------------------------- 453
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
L V DTGIGIP R+F PF QAD S +R +GGTG+GL+I + LVELM G +
Sbjct: 454 ----LSCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTV 509
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL-----KAVVVDEKPVR 714
S S P GS F FT V D + + E P + + ++ ++ V
Sbjct: 510 SCDSEPGCGSVFRFTVALS-----VVPDTGEPEPE---PSHEAAGSFPSRLLLAEDNAVN 561
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF- 773
V Q L LG V + S +G + +V DC ++G +
Sbjct: 562 RMVLQEMLRSLGADVMVVS----------DGAEAVAAVSAERFDMVFMDCQMTGMNGIVA 611
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
A++ + G + +I L + + + A G D +I KP+ + L++
Sbjct: 612 TAEIRRMERTGQLTGRTHIIALTGRVEVGDREACLAAGMDDYLI-KPVMRHDLVMVLRRW 670
Query: 834 LSTENKRQ---AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGA 878
LS ++ A P G S L + IL +G+ + A G+
Sbjct: 671 LSPHDETMPSAAYDKAPGGVSEEAECLLDRDIL----DGIRALEAGGS 714
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++L+ +DN VNRMV L+ GA V + A+ + + FD FMD QM M+G
Sbjct: 551 RLLLAEDNAVNRMVLQEMLRSLGADVMVVSDGAEAVAAVSAER-FDMVFMDCQMTGMNGI 609
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
AT IR+ME + G + I+A+T V + CL GMD Y
Sbjct: 610 VATAEIRRMERTGQ---LTGRTH-------------IIALTGRVEVGDREACLAAGMDDY 653
Query: 981 VSKPFEEENLYRELAKFF 998
+ KP +L L ++
Sbjct: 654 LIKPVMRHDLVMVLRRWL 671
>gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
Length = 1236
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 195/643 (30%), Positives = 282/643 (43%), Gaps = 131/643 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI QE++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
VGSTFSFT F +E E + +P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTISFEIAEEAKVEPLV------VPEKLNNLRTLVVDDNPTALQIYS------A 984
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE-DSGFNAQLLD-WKPNG 784
+M + A+S A+ S D D++L++ W+ E D G +D G
Sbjct: 985 LMRDFHFEVDTAASGAEALYKLSRDPI--DLLLLD---WMMPEMDGGDVISAIDTMVAEG 1039
Query: 785 HVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---N 838
+ K P +I++ A + E D A FA V+ KP +AS + + + E N
Sbjct: 1040 RIAKRPIIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPRLN 1095
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
Q +P H GL +L+V+DN +N+ VA LK G V A + + ALD
Sbjct: 1096 VVQPIDELPVEEGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDI 1150
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ S FDA MDIQMP MDG A R +R+ S LPI+
Sbjct: 1151 IDS-RPFDAVLMDIQMPVMDGLTAARALRERFSADV--------------------LPII 1189
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
AMTA + ++ L GM+ +++KP L+ L+ + K K
Sbjct: 1190 AMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIKHK 1232
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKL-SRDPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGGDVISAIDTMVAEGR------------IAKRP----IIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|373487149|ref|ZP_09577818.1| PAS sensor protein [Holophaga foetida DSM 6591]
gi|372010031|gb|EHP10644.1| PAS sensor protein [Holophaga foetida DSM 6591]
Length = 1464
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 195/672 (29%), Positives = 289/672 (43%), Gaps = 146/672 (21%)
Query: 345 LLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML 404
+++G I I + + MQE K AE A AK+ FLA +SHEIRTPMN I+GM
Sbjct: 704 VMIGTRNLATCIDITERKHAERMMQEAKEIAEGASQAKADFLANMSHEIRTPMNAIIGMA 763
Query: 405 ALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
L L T+L+ Q+DY + Q G+ +L I++D+
Sbjct: 764 HLALKTELNPRQKDYVKKIQQSGQ---------------------------HLLGIINDI 796
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
L ++ +EL DKV E V +NL+ + K T +G
Sbjct: 797 LDFSKIEAGKLSVELTEVHLDKVMENV-----------SNLI--TEKATAKGL------- 836
Query: 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGR------NSWDKFKHLI 578
E V G G N L G G+ N+ KF
Sbjct: 837 ---------------------ELVFDVGPGVPNDLMGDPLRLGQILINYANNAVKFTE-- 873
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
Q I + + GSE V L V DTGIG+ + R+F F QADSST+R Y
Sbjct: 874 -----QGEIDIRTRLVEDLGSE-VFLRFEVRDTGIGLTEEQKGRLFQSFQQADSSTTRKY 927
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP- 697
GGTG+GL+ISK L LM G + S P GSTF FTA GK K + +P
Sbjct: 928 GGTGLGLAISKKLAVLMGGNVGVDSLPGQGSTFWFTARLGKGK---------PRRALVPR 978
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKF--QP 755
P +G + +VVD+ V + I++ MS + + +S A+ QP
Sbjct: 979 PDLRGKRMLVVDDNENARHVL------VDILISMSFQVNEVASGAEALAAIRRAAASGQP 1032
Query: 756 -DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL-----PKLILLATNISKDECDKAKA 809
+++ ++ W G A H+ L P+LI++ T ++E K
Sbjct: 1033 YEVVFLD---WQMPRMDGLEAA-------HHIKALGLDTAPRLIMV-TAYGREEVLKGAE 1081
Query: 810 GGFADTVIMKPLRASM----IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVV 865
+ V++KP+ SM I L VL + +P + Q LRG K+L+V
Sbjct: 1082 TVGVEDVLIKPVSPSMLFDSIMRVLGAVLEEGEAGEGEGPLPTDEAVLQ--LRGLKVLLV 1139
Query: 866 DDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRR 925
+DN N+ VA L G V+ A + +L+K+++ +D MD+QMP MDG AT R
Sbjct: 1140 EDNDFNQQVATELLADAGIKVDVAENGLISLEKVRT-GTYDLVLMDMQMPVMDGITATVR 1198
Query: 926 IRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
+R+ + +PI+AMTA+ + A D C GM+ Y+ KP
Sbjct: 1199 LREEGHR----------------------MPIIAMTANAMQADRDRCTSAGMNDYLVKPI 1236
Query: 986 EEENLYRELAKF 997
+ + ++R LA++
Sbjct: 1237 DPDEMFRVLARW 1248
>gi|336309781|ref|ZP_08564758.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
gi|335866775|gb|EGM71738.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
Length = 1236
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 195/643 (30%), Positives = 285/643 (44%), Gaps = 131/643 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTPLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI QE++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
+GSTFSFT F +E E + +P L+ +VVD+ P +
Sbjct: 937 IGSTFSFTISFEIAEEAKVEPLV------VPEKLNNLRTLVVDDNPTALQIYS------A 984
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE-DSGFNAQLLD-WKPNG 784
+M + A+S A+ S D D++L++ W+ E D G +D G
Sbjct: 985 VMRDFHFEVDTAASGAEALYKLSRDPI--DLLLLD---WMMPEMDGGDVISAIDTMVAEG 1039
Query: 785 HVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---N 838
+ K P +I++ A + E D A FA V+ KP +AS + + + E N
Sbjct: 1040 RIPKRPIIIMMTAYAAEPLQYEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPRLN 1095
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
Q + + + H GL +L+V+DN +N+ VA LK G V A + + ALD
Sbjct: 1096 MVQPMAEIESEAGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVLADNGQIALDI 1150
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ S FDA MDIQMP MDG A R +R+ S A+E LPI+
Sbjct: 1151 IDS-RPFDAVLMDIQMPVMDGLTAARALRERYS-ADE-------------------LPII 1189
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
AMTA + ++ L GM+ +++KP L+ L + K K
Sbjct: 1190 AMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHK 1232
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNNLRTLVVDDNPTALQIYSAVMRDFHFEVDTAASGAEALYKL-SRDPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ KR I+ MTA E
Sbjct: 1023 MDGGDVISAIDTMVAEGR------------IPKRP----IIIMMTAYAAEPLQYEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|336314449|ref|ZP_08569367.1| PAS domain S-box [Rheinheimera sp. A13L]
gi|335881230|gb|EGM79111.1| PAS domain S-box [Rheinheimera sp. A13L]
Length = 1850
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 198/664 (29%), Positives = 296/664 (44%), Gaps = 112/664 (16%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
++ +G + + ++G + + + + + E K +AE A AKS FL+ +SHEIRTPMN
Sbjct: 1083 WMLSVGKAIQHKVFGILLDVSESKAMESALLEAKEKAEQATKAKSDFLSNMSHEIRTPMN 1142
Query: 399 GILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458
I+GM L LDT+L+ QR+Y I +V A++ L
Sbjct: 1143 AIIGMSHLALDTELAPKQRNY--------------IEKVHRSAEV-------------LL 1175
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
I++D+L ++ IE F D V E Q++ ++VG +K E+ HI
Sbjct: 1176 GIINDILDFSKIEAGKLDIEQTEFQLDTVLE----------QLV-DMVG--LKAAEK-HI 1221
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
+ +A T+L+G GQ T G A KF
Sbjct: 1222 ELHFSIAPDV--------PTVLSGDPLR------LGQILTNLGNNAV-------KFTE-- 1258
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
Q+ +++ + V L V+D+GIG+ Q ++F F QADSST+R Y
Sbjct: 1259 -----QAGEITVSVHCEQQEANQVLLHFAVKDSGIGMTAEQQAKLFQSFSQADSSTTRKY 1313
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
GGTG+GL+I K L ELM+G+I S GSTF FTA G + + LP
Sbjct: 1314 GGTGLGLAICKTLTELMQGEIWVESSEGQGSTFHFTARLGVVTQ-------PQTATGLPD 1366
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII 758
GLK VV D+ + L G V + S + A S + D+ QP +
Sbjct: 1367 SMTGLKVVVADDNDTARDILAGLLRHQGFDVTSTDSGEQALSVVREA-----DQQQPFQL 1421
Query: 759 LVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIM 818
L D + G D L P + PK I+L T DE +A D+ +
Sbjct: 1422 LC-IDWNMPGLDGLATIAKLQQLP---LLSPPK-IMLVTAYGTDEARQAAVHLKIDSYLA 1476
Query: 819 KPL-RASMIAACLQQV--LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVA 875
KP R S++ A L S + ++ G ++ Q LRG +IL+ +DN +N+ +A
Sbjct: 1477 KPFSRHSLLQAVLHSFGHNSQVSSKETGITAKVQAAIRQ--LRGARILLAEDNILNQELA 1534
Query: 876 AGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANE 935
L G V A + + ALD LQ H FDA MD QMP MDG+ AT IRQ+ +
Sbjct: 1535 MELLSSNGLVVTLAENGQQALDLLQQQH-FDAVLMDCQMPVMDGYAATAAIRQLGQFS-- 1591
Query: 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
LPI+AMTA+V+ A ++ L GM+ +++KP ++ +A
Sbjct: 1592 ------------------QLPIIAMTANVMAADIEKALDAGMNAHIAKPINVNEMFLVMA 1633
Query: 996 KFFK 999
K+ K
Sbjct: 1634 KWIK 1637
>gi|408788053|ref|ZP_11199776.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
gi|408486131|gb|EKJ94462.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
Length = 1144
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 183/666 (27%), Positives = 293/666 (43%), Gaps = 148/666 (22%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL ++L + Q+ +
Sbjct: 578 ELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKS 637
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KIEA +++L +V F+ ++DV+SL S + K IEL V ++
Sbjct: 638 GNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVVRIAPS 697
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
V V+GD GRFRQI+TNLVGN+VKFTE GH+ V++ ++ E +L+ E+
Sbjct: 698 VFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLVELS------AQSAEASEAILSLRVED 751
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ + T+ +DKF +D+ + +
Sbjct: 752 SGIGIPSDKLETI-----------FDKFSQ-VDSSATRRH-------------------- 779
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ ++ +GL V L G+I VS
Sbjct: 780 --EGTGLGLAIT------------------------VGL------VGLFNGKIDVVSEVG 807
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP---GFKGLKAVVVDEKPVRAAVTQYHLN 723
GS+F F + + D+PP + ++ +V+D+ V + L
Sbjct: 808 KGSSFEVNIPFQMTE----------RRRDVPPLSVAIENIRVLVIDDNDVNRRILTEQLQ 857
Query: 724 RLGI---------------------MVKMSSSIKDASSTAKNGL-----TSSEDKFQPDI 757
GI + + + I D NGL ++ +F
Sbjct: 858 SWGIDGHAVEGGPTGLAVLQEAVAVGLSIDAIILDYHMPVMNGLDVVERIRADRRFDDIA 917
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLAT---NISKD-ECDKAKAGGFA 813
I+ + G+++ F D H+ K + LL + ++ +D +A+ FA
Sbjct: 918 IIFLTSMDVVGDETLFT----DLNVQAHLMKPARARLLRSTLFDVVRDVRLKRARPEAFA 973
Query: 814 DTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS-SFHQGLLRGKKILVVDDNGVNR 872
AS + + ++E KR+A VP S L+ +LV +DN VN+
Sbjct: 974 G--------ASDGGSSRPEGPASEKKRRA--EVPTVSVRLRPSLI---DVLVAEDNDVNQ 1020
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
+V L++ G + K A+ + + MD+ MP M+G +AT+ IR E
Sbjct: 1021 IVFTQILQQTGLRFLIVGNGKKAVQAWEE-YNPAIILMDVSMPVMNGHQATQAIRTAELA 1079
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
A E H+PI+ +TA A D CL+ GMD Y+SKP E L
Sbjct: 1080 AAEGR----------------HVPIIGVTAHTQDADRDLCLQAGMDDYLSKPISPEILED 1123
Query: 993 ELAKFF 998
++A++
Sbjct: 1124 KIAQWL 1129
>gi|357404372|ref|YP_004916296.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
gi|351717037|emb|CCE22702.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
Length = 1528
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 181/651 (27%), Positives = 275/651 (42%), Gaps = 156/651 (23%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A+ AKS FLA +SHEIRTPMN ILG+ L+L+TDL++ Q+D+ Q KA
Sbjct: 793 EAKQSAETANRAKSAFLANMSHEIRTPMNAILGLTQLVLETDLNARQKDFLQKVHASSKA 852
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++ IL+DVL +S+ IE D+V
Sbjct: 853 LLS---------------------------ILNDVLD-YSK------IEAGRLEIDRVS- 877
Query: 490 FVLGDPGRFRQIITNLVG-NSVKFTERG-HIFVKVH-LAERTMVKTDAKDETLLNGGTEE 546
R ++T++ + + E+G +F ++ LA RT++ + +LN
Sbjct: 878 ------FRVESVLTSVADLFAARIEEKGLELFFEIEALANRTLIGDPLRLTQVLNNLVGN 931
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ + G+ + I + A + + L
Sbjct: 932 AIKFTNEGEVH--------------------------------IKVEAIEQSDDSLLLQF 959
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIG+ E +F PF QADSS +R +GGTG+GL+I +V LM G I
Sbjct: 960 SVRDTGIGLSQEKAELLFQPFTQADSSITRQFGGTGLGLAICSKIVALMGGTIGAAGVEG 1019
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
G+ F+FT G E +++ S+ + + +VVD++ + + L G
Sbjct: 1020 KGAVFTFTVRVGIEAE-APQNLDLSR-------IRAQRVLVVDDQSTSRLILECLLTEWG 1071
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH- 785
++ S S +DA + +E K P F+ LLDW+ G
Sbjct: 1072 VICDTSDSGEDALRQ----IYRAEQKNCP-----------------FSTVLLDWRMPGMS 1110
Query: 786 ---------------VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
+ K P +++ T K++ D ++ KP+ S++ L
Sbjct: 1111 GAEVAERLENDCRKGLLKHPLTVIMITAYDKEQLLAQADRIHFDKILTKPVTPSVLYETL 1170
Query: 831 QQVLSTENKRQAGRGV---PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
AG V P + L G KILVV+DN +N+ V L+ GA+V
Sbjct: 1171 -----------AGHSVIPKPEDKALGAIRLDGVKILVVEDNALNQEVVVEILQNRGASVT 1219
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A + + ALDKL+ FD MD+QMPEMDGFEATRRI+
Sbjct: 1220 VAENGRVALDKLEQ-EIFDIVLMDLQMPEMDGFEATRRIK-------------------- 1258
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
A D LP++ M+A V+ C G D +V+KP + +L R L K+
Sbjct: 1259 AIPDYHALPVVVMSAAVMPEERARCRLAGADDFVAKPVDPGDLERLLVKWL 1309
>gi|168016518|ref|XP_001760796.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162688156|gb|EDQ74535.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1165
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 183/322 (56%), Gaps = 18/322 (5%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
+++E +Q + AE A AKS+FLA +SHEIRTP++GI+GM +L L+TDL+ QR+
Sbjct: 553 LELERTNRSLQVSQAAAEEASRAKSEFLANMSHEIRTPIHGIIGMASLALETDLTDEQRE 612
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
+ +T L+ ++N +LD AKIEA ++ELE + F++ + + + ++ K ++
Sbjct: 613 HLETVSQSADCLLHIVNAILDLAKIEAGRVELERIEFSVFDTVSSTIKMLQVRANQKQLQ 672
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
L+ + + VPE ++GD R +Q + NLVGN++KFT G V L + T + T
Sbjct: 673 LSWEIDENVPEHLVGDAARLQQCLINLVGNAIKFTHEG----SVSLTAKVYTGTGPLERT 728
Query: 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLID-AEGFQSNASIINMMASNG 597
++ R T AA+ + D H+ID +E F ++ I S
Sbjct: 729 SSATLKKKSSSREPT----------AAEEPQTNDS-HHVIDISEIFATDGEISRCSNSAT 777
Query: 598 GSED--VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+D V+L+ V+DTGIGI Q+ VF F QADSST+R YGGTG+GLSI + LV++M
Sbjct: 778 VKKDDRVSLLFAVQDTGIGISKEKQKEVFKAFSQADSSTTRLYGGTGLGLSIVERLVQMM 837
Query: 656 RGQISFVSRPQVGSTFSFTAVF 677
G+I S P GSTF F A F
Sbjct: 838 GGRIWLESEPGKGSTFYFIAQF 859
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 73/135 (54%), Gaps = 18/135 (13%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-HCFDACFMDIQMP 915
LRG KIL+ +DN VN+ VA LKKFG V+ + + LD L+ + +D MD+QMP
Sbjct: 1016 LRGMKILLAEDNIVNQKVACQQLKKFGTEVDVVSDGQQCLDALERDRNGYDIILMDVQMP 1075
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
+DG +ATR+IR++E K N H PI+ +TA I D+CL
Sbjct: 1076 VLDGLQATRKIREIEEKHNYP-----------------HKPIIGLTAHAIQGYKDKCLSA 1118
Query: 976 GMDGYVSKPFEEENL 990
GMD Y KPF+ L
Sbjct: 1119 GMDAYACKPFQVREL 1133
>gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A:Hpt [Shewanella
piezotolerans WP3]
Length = 935
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 193/651 (29%), Positives = 289/651 (44%), Gaps = 129/651 (19%)
Query: 356 IHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
I I VE D K RA A KS+FLA +SHE+RTP+NG++G LL T L S+
Sbjct: 282 IEIQNVELDMAKK-----RALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSS 336
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
Q+DY +T + L+++IN++LD +K+EA K+ LE + F+LR ++++ +++ S +R K
Sbjct: 337 QQDYIRTIERSATNLLSIINDILDFSKLEAGKMVLENMPFSLREVIEETVTMLSSSAREK 396
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
I+L + V ++PE V GD RF Q+ITNLVGN+VKFT+ G + +K+ L E
Sbjct: 397 EIDLVIDVDPRIPEDVTGDAMRFSQVITNLVGNAVKFTDSGSVQLKMQLEE--------- 447
Query: 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS 595
+G T +T G++A DK L A G Q+++SI
Sbjct: 448 --------IADGSVHVRTEIIDTGIGIDA-------DKLASLFQAFG-QADSSISRRF-- 489
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
GG TG+G L I+K LV M
Sbjct: 490 -GG------------TGLG------------------------------LVITKRLVNRM 506
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVR 714
GQI S PQ GSTF F+ + + S+ LP G K ++ + P+
Sbjct: 507 GGQIGCNSEPQQGSTFWFSLPLNLSQYPI--------SDSLPIGTLKNKSILLFEPNPLS 558
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDSGF 773
+ L R G+ V +++ K +T S F + C I+ SG
Sbjct: 559 HHAIERMLTRWGLKVTKATTSKQLEFI----VTQSSHLFDYGLF----SCKGIAA--SGN 608
Query: 774 NAQLLDWKPNGHVFKLPKL--ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
A+LL V K PK+ ++L TN + E ++ + D + P+ +++ L
Sbjct: 609 AAELL------KVTK-PKVNYLMLITNCVESEEVFSQLRPYIDKQLTMPIGEKRLSSSLI 661
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
ST +P + L +L VDDN N + L + V A +
Sbjct: 662 DPQSTIEAEALPLPMPFAIPEAKENL---TVLAVDDNPANLKLIDTLLNELVTQVHIADN 718
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
AA+ +L FD FMDIQMP DG AT++IRQ + N
Sbjct: 719 GDAAV-QLAKQRSFDLIFMDIQMPGTDGISATKQIRQNSANRNT---------------- 761
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
PI+A+TA I + GM+GY+ KP +E L + K +K+KP
Sbjct: 762 ----PIIAVTAHAIAEERERISSSGMNGYLPKPIDETALKNVIHK-WKNKP 807
>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter rodentium
ICC168]
gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter rodentium
ICC168]
Length = 918
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 178/637 (27%), Positives = 284/637 (44%), Gaps = 133/637 (20%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R++ T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTENGNIDILVE--KRSISNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASI---SRRHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPP--GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ S D P G + V+ A T L+ + V
Sbjct: 513 WF---------HINLDLNPSVISDGPATMSLAGKRIAYVEPNATAAQCTLDILSETPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + ++ DI+L+ + + +L+ K+
Sbjct: 564 IYSPTFSALAAE------------HYDIMLLGVAVTFKEPLTMQHERLI------QATKM 605
Query: 790 PKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
++LA ++ +K K G A + ++KPL ++ + L + L N V +
Sbjct: 606 TDYLMLALPCHAQVNAEKLKQDGVA-SCLLKPLTSTRLLPALVE-LCRHNHHDNALPVND 663
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
++ VDDN N + L VE S + A+D+ + FD
Sbjct: 664 RKI-------AMTVMAVDDNPANLKLIGALLDDLVQHVELCDSGQQAVDRAKQMQ-FDLI 715
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MDIQMP+MDG A I Q+ + P++A+TA +
Sbjct: 716 LMDIQMPDMDGIRACELIHQLPHQQQT--------------------PVIAVTAHAMAGQ 755
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
++ L GM+ Y++KP EE+ L+ L ++ KP +G
Sbjct: 756 KEKLLSAGMNDYLAKPIEEDKLHSLLLRY---KPGTG 789
>gi|381157615|ref|ZP_09866849.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380881478|gb|EIC23568.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1502
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 177/638 (27%), Positives = 290/638 (45%), Gaps = 130/638 (20%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+AE A AKS+FLA +SHEIRTPMN ++ + L L TDL + QRDY + G+ L+ +
Sbjct: 724 KAEEATRAKSEFLANMSHEIRTPMNAVINLSRLALKTDLDAQQRDYIEKVLRSGENLLGI 783
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD ++IE+ K+ L+AV F L ++ DV + + K+ + +E+ +F + + G
Sbjct: 784 INDILDFSRIESGKMALDAVPFRLIDLISDVADVITVKADERELEV-LFDIPPLERLLFG 842
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
D R RQ++ NL+ N+VKFT +G + + + + + + D+ L+ VC SG
Sbjct: 843 DALRLRQVLINLLNNAVKFTLQGEVVLGIDVVDCS------SDKVRLD----VFVCDSGI 892
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
G+ + + F+ Q+++SI GG TG+
Sbjct: 893 -------GISRKQRQRLFRPFE--------QADSSITRGF---GG------------TGL 922
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ S SRH L+ LM ++S S GSTFSF
Sbjct: 923 GL-----------------SISRH-------------LLGLMGAELSLESALGEGSTFSF 952
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
T F C+E+ + + E P + + ++VD+ V V Q+ L R G
Sbjct: 953 TLDFPLCEEH---EADKETPEQRPQIDR--RILIVDDNQVACQVLQHMLGRYGAKAA--- 1004
Query: 734 SIKDASSTAKNGLTSSEDKFQP----DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
A+S + G+ + + + D++L++ + F L D +
Sbjct: 1005 ----AASDGRQGIAALREAARAGCPYDLLLIDYQMPELDGIATFKQVLQD----AEIMPK 1056
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
P +L+ S++ KA+ GFA+ ++ KP+ + + L G G P
Sbjct: 1057 PMAVLVTAFSSEEVAIKARKLGFAN-LLEKPINPARLFEVLL---------DGGAGGPRA 1106
Query: 850 S-SFHQGL-------LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+F G +RG+++L+ +D +NR +A L+ G V A + AL+ L +
Sbjct: 1107 RVAFQSGRPLAELDGIRGQRVLLAEDQDINRQIATELLESIGLRVTTANDGREALEHLTA 1166
Query: 902 -PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
P FD MD+QMP MDGFEATR+IR A LPI+AM
Sbjct: 1167 EPDAFDLVLMDLQMPVMDGFEATRQIRADARWA--------------------ELPIVAM 1206
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
TA + A CL GM+ +++KP + + L+ L ++
Sbjct: 1207 TAHAMSAERQRCLAAGMNDHLAKPIDIDALHAALVRWI 1244
>gi|326424323|ref|NP_762902.2| chemotaxis protein CheY [Vibrio vulnificus CMCP6]
gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
Length = 1328
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 187/638 (29%), Positives = 289/638 (45%), Gaps = 123/638 (19%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++ K A+A AK FLA +SHEIRTPMN ILGM L L+T+L +QR Y
Sbjct: 592 ELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKY------- 644
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+ INE AK NL I++D+L ++ +E F D+
Sbjct: 645 ----LTRINE---SAK-------------NLLGIINDILDFSKIEAGKLSVESIDFSLDE 684
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
V E +TN++ S K E+G F ++ D + L G
Sbjct: 685 VFEN-----------LTNVI--SFKAQEKGIEF---------LLDIDPRVPVGLVGDP-- 720
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLM 605
R G N L G +A F I +++M + S+DVTL
Sbjct: 721 --LRLGQVLVN-LCG-----------------NAVKFTEKGEILVSVMPESQSSDDVTLR 760
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V+DTGIGI +F F QAD+S +R +GGTG+GLSISK LVELM GQ+S S
Sbjct: 761 FSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAV 820
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
+GSTF+FT G +E DI + S G G +A++VD+ +
Sbjct: 821 GMGSTFTFTIHCG-LQEAKMRDIAKPIS-----GLAGKRALIVDDND----------SAR 864
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
I++ + S+++ + NG + ++ Q +V D + G + +LL
Sbjct: 865 NILMTLLSAMQFDAKAVSNGFEALDELRQGAFDMVFVDWNMPGMNG---LELLQTAHQER 921
Query: 786 VFKLPKLILLAT---NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ K L+ IS DE + D++I+KP+ S + + E+ ++
Sbjct: 922 LLAETKNFLVTAYGREISMDE----NSSKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRS 977
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
V +F + + G+ +L+V+DN VN+ VA G L + A + K A++ L+
Sbjct: 978 STTV----TFEKPVFDGQTLLLVEDNEVNQEVAIGLLNGTNLNIITADNGKLAIEALEH- 1032
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
H D MD+QMP MDG AT+ IR+ A LPI+AMTA
Sbjct: 1033 HPIDLVLMDMQMPVMDGITATKAIRERAEWAT--------------------LPIVAMTA 1072
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ + + + C + GM+ +V+KP NLY+ L+++ +
Sbjct: 1073 NAMQSDVERCHEAGMNDHVAKPINVHNLYQVLSQYLSA 1110
>gi|254444274|ref|ZP_05057750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198258582|gb|EDY82890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 748
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 197/679 (29%), Positives = 296/679 (43%), Gaps = 174/679 (25%)
Query: 360 KVEDDFHKM-QELKVR---AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
K D+ K QEL V AE+A+VAKS+FLAT+SHEIRTPMNG++G+L LL + DL
Sbjct: 66 KARDELEKSNQELTVAMKAAESANVAKSEFLATMSHEIRTPMNGLVGVLTLL-EEDLPFE 124
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
+R TAQ C L+ LIN++LD +KIEA K+ LE+V FN + + + L S + K
Sbjct: 125 KRKLLGTAQECADDLLVLINDILDFSKIEAGKMNLESVEFNALNLAESICELHSSSAHKK 184
Query: 476 GIELAVFVSDKVPEFV---LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
G+E+ SD P +GDP R RQ+I+NL N++KFT +G I V ++V
Sbjct: 185 GLEI---TSDSDPSSAFCSIGDPLRLRQVISNLTSNAIKFTNQGEIVVTP-----SIVSK 236
Query: 533 DAKDETLLNGGTEEGVCRSGTGQ---FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589
D + L T+ G+ + Q FN + Q+N+S
Sbjct: 237 DCEQNYLRFEITDSGIGITKETQEKLFNAFT-----------------------QANSST 273
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
GG TG+G+ +S + + M G IG+S
Sbjct: 274 TREF---GG------------TGLGLAISKK---LIEIM-----------GGDIGVS--- 301
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
S+ GSTF F K+ ++ D+P KG + ++VD
Sbjct: 302 -------------SKEGTGSTFWFEIPHRPAKD------QRCNPADIPE-LKGKRIMIVD 341
Query: 710 EKPVRAAVTQYHLNR----LGIMVKMSSSIKDASSTAKNGLTSSEDKFQP--DIILVEK- 762
A T+Y L R G V S +K + L++ E +P D +++++
Sbjct: 342 S----AETTRYALERWLRHWGCEVHTSKCLKQFF----DDLSAIERANRPVYDFVIIDRN 393
Query: 763 ------DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
D W S + K V L +L + + D DK
Sbjct: 394 RIDAHNDSWESVRKNSIG------KSKTRVITLHRLASSDDSTNFDSADK---------- 437
Query: 817 IMKPLRASMIAACLQQVLST--------------ENKRQAGRGVPNGSSFHQGLLRGKKI 862
+ KP+ S + CL + + ENK + + S H L +I
Sbjct: 438 LHKPIAVSRLLECLTGKIQSRQSKHGDLDPPTLPENKEETAKAP--SSKPHSDL----QI 491
Query: 863 LVVDDNGVNRMVAAGALK-KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
L+VDDN NRM+A+ L+ K + A++ + A+D LQ FD MD MPEMDG++
Sbjct: 492 LLVDDNSTNRMIASQLLRQKHAIDPKNASNGRQAIDALQD-GTFDLVLMDCMMPEMDGYD 550
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
ATR IR+ G A +PI+A+TA+ + + C+ GM+ Y+
Sbjct: 551 ATRAIRE-----------------GQAGEKNKDIPIIALTANAMSGDRENCISAGMNAYL 593
Query: 982 SKPFEEENLYRELAKFFKS 1000
SKP +ELA+ ++
Sbjct: 594 SKPIRP----KELAEILQT 608
>gi|404398584|ref|ZP_10990168.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fuscovaginae
UPB0736]
Length = 926
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 183/678 (26%), Positives = 292/678 (43%), Gaps = 135/678 (19%)
Query: 338 FFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPM 397
F+ V GLL+ L I ED F ++L + A AK++FLA +SHEIRTPM
Sbjct: 358 IFISVSGLLMSIALGERRRSIT--EDQFSLSRDLAA-SNAEIAAKAEFLAKISHEIRTPM 414
Query: 398 NGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457
NG+LGM LLL T LS QRDY QT G L+ LINE+LD +K+E+ ++EL+ V F+L
Sbjct: 415 NGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLESGQIELDDVQFDL 474
Query: 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH 517
A+++D LS+F K+ + +EL F+ +VP + GDP R RQ +
Sbjct: 475 NALIEDCLSIFRAKAEQQNVELISFIQPQVPRVISGDPTRLRQTL--------------- 519
Query: 518 IFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHL 577
+ L E M KTD + E L+ + A D RN + +
Sbjct: 520 ----LSLLENAMKKTD-EGEILI---------------------VVALDERNGQPRLR-- 551
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQER--VFMPFMQADSSTS 635
+ V+D+G+ P+ +ER + +Q+ + +
Sbjct: 552 ----------------------------IAVQDSGV--PMDDEERDALLHTELQSKNFLA 581
Query: 636 RHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED 695
G +GL I++ LV LMRG+ S GST T + + D
Sbjct: 582 ASRLGGHLGLVIARQLVLLMRGEFGIKSGANQGSTLWLTLPLDPLH-------LEHPTSD 634
Query: 696 LPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP 755
L KG + +VVD+ V + G+ V S K+A + + D F
Sbjct: 635 LDGPLKGARVLVVDDNDTCRKVLVQQCSAWGLNVSAVPSGKEALALLRTK-AHLRDYF-- 691
Query: 756 DIILVEKDC-WISG--------EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDK 806
D++L++++ ++G ED N + L+++ T IS
Sbjct: 692 DVVLLDQNMPGMTGMQLAAKIKEDPSLNHDI--------------LLIMLTGISNAPSKI 737
Query: 807 AKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA---GRGVPNGSSFHQGLLRGKKIL 863
++ KP+ + L LS K QA VP S + +IL
Sbjct: 738 IARNAGVKRILAKPVAGYTLKTTLADELSQRGKSQAIATPLSVPTVPSVK--VPSDFRIL 795
Query: 864 VVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT 923
V +DN ++ V G L K + A++ + AL +++ +D MD +MP +DGF AT
Sbjct: 796 VAEDNSISTKVIRGMLGKLNLQPDTASNGEEALRAMKA-QRYDLVLMDCEMPILDGFSAT 854
Query: 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
+++R E + P++A+TA ++ + + GMDG+++K
Sbjct: 855 QQLRAWE-----------------VGNQRVRTPVVALTAHILSEHKERARQAGMDGHMAK 897
Query: 984 PFEEENLYRELAKFFKSK 1001
P E L REL + + ++
Sbjct: 898 PVELSQL-RELVEHWVAQ 914
>gi|206578572|ref|YP_002236863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae 342]
gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae 342]
Length = 916
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 179/635 (28%), Positives = 276/635 (43%), Gaps = 143/635 (22%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D+ G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN-------KRQA 842
K ++ N+ A+ A L+ +AACL + L+T A
Sbjct: 599 VKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTTRLLPALVATNHA 651
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
P + L ++ VDDN N + L V S + A+D+ +
Sbjct: 652 PASAPLTQTDSHKL--PMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDQAKRL 709
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
D MDIQMP+MDG A I + P++A+TA
Sbjct: 710 Q-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVIAVTA 748
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 749 HALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
Length = 916
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 179/633 (28%), Positives = 276/633 (43%), Gaps = 139/633 (21%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D+ G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN---KRQAGRGV 846
K ++ N+ A+ A L+ +AACL + L+T A
Sbjct: 599 VKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTTRLLPALMATNHA 651
Query: 847 PNGSSFHQ--GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
P + Q ++ VDDN N + L V S + A+D+ +
Sbjct: 652 PASAPLTQTDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDQAKRLQ- 710
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
D MDIQMP+MDG A I + P++A+TA
Sbjct: 711 MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVIAVTAHA 750
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 751 LEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea blandensis MED297]
gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297]
Length = 951
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 180/659 (27%), Positives = 274/659 (41%), Gaps = 153/659 (23%)
Query: 356 IHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
I I +E D + + A+ A+ K++FLA +SHEIRTP+NGI+G LL ++L+
Sbjct: 262 IEIQNIELDMARRE-----AQQANQVKTEFLANMSHEIRTPLNGIIGFARLLARSNLTKK 316
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
Q DY T + L+ +IN+VLD KIEA KL L+ NLR +++VL++ S K
Sbjct: 317 QEDYISTIMSSSQVLLTIINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAK 376
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
+E+ VPE ++ DP R +Q++TNL+ N++KFT G + + RTM++
Sbjct: 377 NLEVVSLFFADVPEQLVFDPLRLKQVLTNLISNAIKFTNEGSVVI------RTMIEQQQG 430
Query: 536 DE-TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMA 594
++ T+ T+ G+ S T Q AD A F
Sbjct: 431 NKVTVRVSVTDTGIGLSKTQQKALFQAFAQADSST----------AREF----------- 469
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
GG TG+G+ +S K LVE
Sbjct: 470 --GG------------TGLGLVIS------------------------------KRLVEQ 485
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVR 714
M G I S+ GSTF F + D+ + + PP KGL E+
Sbjct: 486 MGGDIGLESKKDEGSTFWFN---------IKADVAPAAQQ--PPKLKGL------EQQSV 528
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774
A V + RL ++ G + +F+ L E SG G
Sbjct: 529 AVVEPREMTRLAYQHQIE------------GWGAVAREFESAAALAE--SLQSGNQYGVT 574
Query: 775 AQLLDWKPNGHVFKLPKLI-----------LLATNISKDECDKAKAGGFADTVIMKPLRA 823
+LD H +L + I L+ N + + + A + +P R+
Sbjct: 575 LAILDVSSQEHNDELYRTILTIDRELSCPTLVIANANDENINAHLLEQGAHYYLTRPFRS 634
Query: 824 SMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK-----KILVVDDNGVNRMVAAGA 878
+ L +++ E++ G H+ L G +L VDDN N +
Sbjct: 635 GELYQALLKLIEPEHE---------GREHHKELSLGHVRSVVSVLAVDDNPANLKLIVTL 685
Query: 879 LKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
L+ G V A+S + A+ KL + FD FMDIQMP MDG ATR+IR+ E
Sbjct: 686 LESLGVEVTSASSGEEAV-KLATDTVFDLVFMDIQMPSMDGMAATRQIRRAEPSNR---- 740
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
H+PI+A+TA + + L+ GMD Y++KP +E+ L R L K+
Sbjct: 741 ---------------HVPIIALTAHALAEEREAMLEAGMDDYLAKPIDEDQLQRTLFKW 784
>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
[Klebsiella sp. 1_1_55]
gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
[Klebsiella sp. 1_1_55]
Length = 916
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 179/635 (28%), Positives = 276/635 (43%), Gaps = 143/635 (22%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D+ G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN-------KRQA 842
K ++ N+ A+ A L+ +AACL + L+T A
Sbjct: 599 VKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTTRLLPALVATNHA 651
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
P + L ++ VDDN N + L V S + A+D+ +
Sbjct: 652 PASAPLTQTDSHKL--PMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDQAKRL 709
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
D MDIQMP+MDG A I + P++A+TA
Sbjct: 710 Q-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVIAVTA 748
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 749 HALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|171059849|ref|YP_001792198.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170777294|gb|ACB35433.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1087
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 178/652 (27%), Positives = 280/652 (42%), Gaps = 153/652 (23%)
Query: 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALIN 435
E A+ +K+ FLA +SHEIRTPMN I+G+ L+ + QRD + + L+ +IN
Sbjct: 563 EVANQSKTAFLANMSHEIRTPMNAIIGLTHLMARDSRDALQRDRLRKVDGAARHLLQIIN 622
Query: 436 EVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP 495
++LD +KIEA K+ L+ + F+ +L L + E + KG+ELA+ + +PE + GDP
Sbjct: 623 DILDLSKIEAGKMGLDDIEFSRDELLSGALEMVGEVADAKGLELALDAGN-LPERMRGDP 681
Query: 496 GRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKDETLLNGGTEEGVCRS 551
R Q + NL+ N+VKFTE G + ++ L R V+ + +D + ++GV
Sbjct: 682 KRLAQALINLLANAVKFTEHGWVRLRGELLADQGGRLQVRFEVRDSGIGISPEQQGVL-- 739
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
FN + Q++AS +GG T
Sbjct: 740 ----FNAFA-----------------------QADASTTR---RHGG------------T 757
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ L +RH + +M G++ VS+P GS+F
Sbjct: 758 GLGLAL-----------------TRH-------------IAAMMEGEVGLVSQPGEGSSF 787
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
FT + + + E P +GL+A+VVD+ P L LG+ V
Sbjct: 788 WFTGWLRRAAGSI-----AMRGE---PRLQGLRALVVDDLPEALDAITATLGALGLQV-- 837
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK--PNGHVF-- 787
DA T + + +D+ + E F+ L+DW+ P +
Sbjct: 838 -----DAHLTGRAAVRRVQDE--------------AAEGRHFDVMLVDWRMAPLDGLATL 878
Query: 788 ---------KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
++P +LLA + + + D V++KP+ S + L QVL +
Sbjct: 879 GELRRACGDRMPPFVLLAA-FNDAQMRRQAREARVDAVLVKPVTPSALQESLLQVLQGHH 937
Query: 839 KRQAGRGVPNGSSFHQGLLR----GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
K P S + LR G+++L+ +DN +N+ VA L G TV+ A
Sbjct: 938 KDSV--AAPLDESEAESELRRRHAGQRVLLAEDNPINQEVARELLASVGLTVDVVADGAG 995
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
AL + Q +D MD+QMP MDG EATR+IR +M +G
Sbjct: 996 ALAQAQEGR-YDLVLMDVQMPGMDGLEATRQIRA-------RMGHG-------------- 1033
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
LPI+AMTA+ CL GM+ ++ KP + LY A + P GA
Sbjct: 1034 LPIIAMTANAFGDDRLACLDAGMNAHIGKPVDPALLY---ATVLRWLPPPGA 1082
>gi|347756505|ref|YP_004864068.1| Signal transduction histidine kinase [Candidatus Chloracidobacterium
thermophilum B]
gi|347589022|gb|AEP13551.1| Signal transduction histidine kinase [Candidatus Chloracidobacterium
thermophilum B]
Length = 780
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 175/634 (27%), Positives = 279/634 (44%), Gaps = 114/634 (17%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMNG++GM LL T LS QR+Y +T + ++L+ ++N++LD +
Sbjct: 237 KSAFLANMSHEIRTPMNGVIGMSNLLASTPLSGEQREYLETIRSSAESLLVILNDILDFS 296
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA L +E F+LR ++ L + +E + K +++A + D +
Sbjct: 297 KIEAGALHIEQTPFDLRECIESTLDVIAEPASRKRLDVAYLIEDN--------------V 342
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
T +V + +F + V ++L +K + E ++
Sbjct: 343 PTTIVSDPTRFRQ-----VLLNLLSNA-IKFTEQGEVVVT-------------------- 376
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
+ AE + + + +N L V V DTGIGIP A
Sbjct: 377 ----------------VSAEPLDDDEPSLTKLTANDRPRRYELRVDVRDTGIGIPPEAHG 420
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT----AVF 677
RVF F QA +T R YGGTG+GL+ISK LVE++ G I F S G+TF FT +
Sbjct: 421 RVFRDFEQATETTYRVYGGTGLGLAISKRLVEMLGGNIWFESEVGRGTTFHFTLPCESAP 480
Query: 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD 737
+ + YV + P + A+VVD+ + +Y L + M++S +
Sbjct: 481 NQPRVYVRGSL---------PELENKIALVVDDNATNRHILEYQLRAWHALPLMAASAAE 531
Query: 738 ASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLAT 797
A + T DI ++ D + D A+ + +P + P L +T
Sbjct: 532 ALHCLQQPGTKV------DIFIL--DVQLPDMDGLTLAREIRRQPA--YARTPILFFGST 581
Query: 798 NISKDECDKAKAGGFADTVIM-KPLRASMIAACLQQVLSTENKRQAGRGVP--NGSSFHQ 854
+E KA+ FA + +M KP+R + L+++L+ + P + + Q
Sbjct: 582 ---MEESLKAQLSTFAPSAMMPKPIRLTRFQRQLEELLAPRPEPAPSTPQPLFDATLGQQ 638
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS----AKAALDKLQSPHCFDACFM 910
LR +LVV+DN VNR +A L+K G + A+ +A L + +D FM
Sbjct: 639 HPLR---VLVVEDNVVNRKLAVRMLEKLGYQPDTASDGIEGVEAILGAVACEKPYDLVFM 695
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
D+QMP DG EA R +R A ++ +A+TA V+
Sbjct: 696 DVQMPGKDGLEAVREVR-------------------AALAPDMCPRFIALTAAVLEEERR 736
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
G+D Y+ KPF +L +A + PL+
Sbjct: 737 AAFAAGVDDYLGKPFTIHDL---VAALQATSPLA 767
>gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
DSM 15981]
gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
DSM 15981]
Length = 810
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 182/641 (28%), Positives = 277/641 (43%), Gaps = 138/641 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGM--LALLLDTDLSSTQRDYAQTAQICGKALIA 432
AE A+ AKS FL+ +SHEIRTPMN I+GM +A D + D + K L+
Sbjct: 288 AEQANRAKSDFLSRMSHEIRTPMNAIIGMTTIAAAYIEDRKRVE-DCLEKIGYSSKHLMT 346
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
LIN+VLD +KI+A K+++ FNL I++ + S+ ++ +KG+ V + D + ++
Sbjct: 347 LINDVLDMSKIDAGKMQISHEPFNLETIVESITSIIYPQAEDKGLIFNVPLVDLINTVLI 406
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
GD R QI+ NL+ N+VKFT +G V L R M + + V +G
Sbjct: 407 GDGLRLNQILLNLLSNAVKFTPKGG---TVRLRIRQMWRRAGRVRLSF------AVSDTG 457
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
G S D H+ D F+ +N + GG TG
Sbjct: 458 IGM--------------SQDFLSHIFDP--FEQER--VNAGQTYGG------------TG 487
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+G+P I+K L LM G IS S+P G+TF+
Sbjct: 488 LGMP------------------------------ITKNLATLMGGTISVKSKPDQGTTFT 517
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
F ++ ++ + K + + LK +V D+ + L LGI
Sbjct: 518 VELDFDLPEQE--NEVPEQKHQ----AVQSLKVLVADDDRDSCIHSTLLLQNLGIQ---- 567
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PN-------- 783
D T + + E +Q SG +G++ L+DW+ P+
Sbjct: 568 ---SDWVQTGRECVEKVERAYQ------------SG--AGYDVCLVDWRMPDMDGIETTR 610
Query: 784 --GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
+ LI++ T +K A+ + KP+ AS + L V
Sbjct: 611 RMREIVGQDTLIIIITAYDWGAIEKNARSAGANAFLAKPIFASTLYNALLSVTGI----- 665
Query: 842 AGRGV--PNGS-SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
G+ V P+ S SFH L G+ +L+V+DN +N +A LK G TV+CA + A+DK
Sbjct: 666 -GKAVLRPSASGSFHWPELNGRHVLLVEDNDINLEIAMELLKMSGITVDCARDGQEAVDK 724
Query: 899 -LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L + +D MD+QMP MDG++AT IR+ + L +PI
Sbjct: 725 FLTNGGDYDLILMDVQMPVMDGYQATGAIRR------------------SGHPKALSVPI 766
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+AMTAD H GMDG+++KP E E LY+ LA+ F
Sbjct: 767 IAMTADAFHEDVVRAADAGMDGHLAKPIEPELLYQTLAEMF 807
>gi|345300630|ref|YP_004829988.1| multi-sensor hybrid histidine kinase [Enterobacter asburiae LF7a]
gi|345094567|gb|AEN66203.1| multi-sensor hybrid histidine kinase [Enterobacter asburiae LF7a]
Length = 919
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 182/629 (28%), Positives = 285/629 (45%), Gaps = 130/629 (20%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L ++L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I V V + L N + V
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDVLV------------EKRALSNNKVQIEVQIR 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
TG G+ D + F+ Q++ASI +GG T
Sbjct: 451 DTG-----IGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQK------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D P KG++ V+ AA Q L+ L
Sbjct: 513 WF---------HISLDLNPNVLTDGPVTDCLKGMRLAYVEPN---AAAAQSTLDVLS--- 557
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S+ ++ S + L DI+L+ +GE + +L +
Sbjct: 558 --STPLEIIYSPTFSALAVE----HYDILLMGIPVTFTGELTMQQERL------AKAASM 605
Query: 790 PKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
+LLA ++ ++ K G A ++KPL A+ + L TE R + +P
Sbjct: 606 TDYLLLALPCHAQINAEELKNDGAA-ACLLKPLTATRLLPAL-----TEYCRLSQHALPL 659
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
+ Q L ++ VDDN N + L VE S A+++ + FD
Sbjct: 660 VND-EQKL--PMSVMAVDDNPANLKLIGVLLGDQVQHVELCTSGAQAVEQAKQMQ-FDLI 715
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MDIQMP MDG A IRQ+ + P++A+TA +
Sbjct: 716 LMDIQMPGMDGIRACELIRQLPHQQQT--------------------PVIAVTAHAMAGQ 755
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKF 997
++ L GM+ Y++KP +EE L+ L ++
Sbjct: 756 KEKLLSAGMNDYLAKPIDEEKLHNLLLRY 784
>gi|428148608|ref|ZP_18996471.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|427541449|emb|CCM92609.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 916
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCNAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|350553242|ref|ZP_08922424.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
gi|349791415|gb|EGZ45300.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
Length = 1169
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 128/365 (35%), Positives = 181/365 (49%), Gaps = 68/365 (18%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+Q+ K AE A+ AKS FLA +SHEIRTPMN +LGML L L+T L+ QR Y + AQ
Sbjct: 679 LQQTKEAAEIANQAKSAFLANMSHEIRTPMNAVLGMLYLALETHLNPRQRGYLEQAQRSA 738
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ L+N++LD +K+EA +L+LE + F L A+L DV ++ ++R+KG++ V +V
Sbjct: 739 NALLGLLNDILDFSKVEAGQLKLEHIPFKLSAVLGDVETMLGNQARDKGLDFHVQRDAQV 798
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P+ +LGDP R G IF+ + T
Sbjct: 799 PDVLLGDPLRL-----------------GQIFINL---------------------TNNA 820
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
V + G+ D HL EGF ++ V +
Sbjct: 821 VKFTEQGRI---------------DLSVHL---EGFTHCGAV------------VRVHFV 850
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIG+ S ++F PF QADSS +R YGGTG+GLSI K LVELM+G I S+PQ
Sbjct: 851 VRDTGIGMEKSQLAQLFTPFHQADSSMTRRYGGTGLGLSICKRLVELMQGSIEVSSQPQQ 910
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F T F + DI+ S P G + ++V++ V V L + G+
Sbjct: 911 GSAFFLTLPFAVATDTHSPDIRAPSSAPRPSALSGRRILLVEDNEVNQIVILRVLEQAGM 970
Query: 728 MVKMS 732
MV ++
Sbjct: 971 MVSIA 975
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 22/144 (15%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD--KLQSPHCFDACFMDIQM 914
L G++IL+V+DN VN++V L++ G V A AAL ++Q H +D MDIQM
Sbjct: 943 LSGRRILLVEDNEVNQIVILRVLEQAGMMVSIAEHGMAALAHIEVQGVHGWDLILMDIQM 1002
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
PE+DG E TRRIR A+ D +PI+ ++A + L
Sbjct: 1003 PELDGLETTRRIR--------------------ARPDGAWIPIIGLSAHAREDNIHDALL 1042
Query: 975 CGMDGYVSKPFEEENLYRELAKFF 998
GM+ +++KP + L E+A++
Sbjct: 1043 AGMNTHLAKPIDPPLLLAEIARWL 1066
>gi|365140200|ref|ZP_09346255.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
4_1_44FAA]
gi|363653516|gb|EHL92465.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
4_1_44FAA]
Length = 916
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867994|ref|ZP_09604392.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470095|gb|EHP30299.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 733
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 184/694 (26%), Positives = 315/694 (45%), Gaps = 126/694 (18%)
Query: 312 DSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ-- 369
+ + + ++ Y +K ++ + L + + LL+ + Y A VK++++ + +
Sbjct: 159 NEYIRFQLALAYKKKVNSDYKYLQLIIYASIFILLMATLFYLFA---VKIKNNINTLSRE 215
Query: 370 --ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
E K AE + K+ FLA++SH+IRTPMNG++GML LL+++ L TQ+ A A+
Sbjct: 216 LVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSKLDDTQKHQASLAKSSA 275
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL++LIN++LD +K+EA K++LE + FN+R D L F+E
Sbjct: 276 KALLSLINDILDFSKVEAGKMDLEYIDFNIR----DELGDFAE----------------- 314
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
G + + E+G + ++V E+ M+K D G
Sbjct: 315 -------------------GIAFRAQEKGVELILEVTDIEQNMIKADP--------GRIR 347
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ + G N++ KF +EGF + +I+++ D L++
Sbjct: 348 QILSNIVG--NSI-------------KFT----SEGFIAIKAILDVTEPT----DARLII 384
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
+ D+GIGIP + +F F Q D+ST+R YGGTG+GL+I + L ELM G++ S
Sbjct: 385 EMSDSGIGIPEDKIDTLFDSFSQVDASTTRKYGGTGLGLAIVEKLCELMNGKVEVKSDFG 444
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GS F+ + ++ Q +S +P K K +++D+ + L
Sbjct: 445 KGSIFTID---------ISVELSQDRSLAIPHNSVKDKKILIIDDSKFSIEAMKKQLQHW 495
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
G+ V + K+A + +D F DI + D I +S +L
Sbjct: 496 GMKVYSAIDSKEALKMLQ------DDSF--DIAFI--DRVIPDMNS---EELAKTIRKNT 542
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
+ K+I++ + I + + + G D KP + L + +N +
Sbjct: 543 AYSSMKIIMMTSLIDRVDAISYRNIGI-DGFFPKPATTKDLFKALDTLFKDDNFFSS--- 598
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-HC 904
Q + IL+V+DN N++VA G L+ FG + A + AL+ L S
Sbjct: 599 --ENIEEEQDPIFESNILLVEDNITNQLVANGMLEDFGLEADIANNGIEALEMLNSSSKK 656
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
++ FMD QMPE+DG+ AT+ IR +A E+ N +PI+AMTA+
Sbjct: 657 YNLIFMDCQMPELDGYGATQAIRA--EQAGERYTN---------------IPIIAMTANA 699
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ ++C GM Y++KP ++E L L K+
Sbjct: 700 MQGDQEKCRSAGMSDYLAKPIDKELLKNILLKWL 733
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+S E + +P+ S ++ KKIL++DD+ + L+ +G V A +K
Sbjct: 453 ISVELSQDRSLAIPHNS------VKDKKILIIDDSKFSIEAMKKQLQHWGMKVYSAIDSK 506
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
AL LQ FD F+D +P+M+ E + IR+ N S
Sbjct: 507 EALKMLQD-DSFDIAFIDRVIPDMNSEELAKTIRK----------NTAYS---------- 545
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+ I+ MT+ + G+DG+ KP ++L++ L FK
Sbjct: 546 SMKIIMMTSLIDRVDAISYRNIGIDGFFPKPATTKDLFKALDTLFK 591
>gi|406833703|ref|ZP_11093297.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
18645]
Length = 1283
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 202/418 (48%), Gaps = 49/418 (11%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+N++ +E TL V DTGIGIP R+F PF Q DSST+R YGGTG+GL+I
Sbjct: 735 ILNIVCDRIENEIATLRFIVRDTGIGIPQDRANRLFQPFSQVDSSTTRKYGGTGLGLAIC 794
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFG---KCKEYVFEDIKQSKSEDLPPGFKGLKA 705
K LVE+M GQI SR G+ F FT F C+ Y D + +G +
Sbjct: 795 KHLVEMMGGQIGVESRVGAGTMFWFTVNFPVREHCELYSERDRR---------ALEGRRV 845
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
++VD+ + H R G+ +++++DA S+ +F D+++ + D
Sbjct: 846 LIVDDNETNLLIMDEHTRRWGMQSATAATVEDALRLFDEA-RESDARF--DLVISDYDM- 901
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
E +G + L G +P I+L + +S + + +A G + KP+ ++
Sbjct: 902 --PERNGSDLAL----SLGTRGVMPPFIMLGSGLSNESAESLQAMGICQN-LTKPVLSTQ 954
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK------KILVVDDNGVNRMVAAGAL 879
+ A +Q VL +G P + H + ++LV +DN +NR+ L
Sbjct: 955 LYAAIQGVLQQNRLNSSG---PRMTMRHTKVSSSPGEHGDIEVLVAEDNAINRLYVTTLL 1011
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
+FG + A+ ++ H F MD QMP++DGFEATR IR +ES+
Sbjct: 1012 AEFGCKFRTVTNGLEAIQAIRE-HQFSIVLMDCQMPQLDGFEATRCIRTLESE------- 1063
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
R E H+PI+A+TA+ + D CL GMD Y+SKPFE +LY + K+
Sbjct: 1064 ---------HRIEGHVPIIALTANAVKGDADRCLAAGMDHYLSKPFEPRSLYDVILKY 1112
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 98/156 (62%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+ Q K A+AA++AKS FLA +SHEIRTP+NG++GM LLL T+L S Q + + Q
Sbjct: 583 EWQRQKEAADAANLAKSSFLARMSHEIRTPLNGVIGMTELLLTTELDSRQHQFVKACQTS 642
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G+AL+ L+N++LD +KIEA KLE++ F+L ++ + + ++ KG+E +
Sbjct: 643 GRALLTLVNDILDLSKIEAGKLEMDVHDFDLEQLVHETTEMLWLRAHEKGLEFICDFDPQ 702
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ GD R QI+ NL+ N+VKFTE G + + +
Sbjct: 703 ARQIYSGDGNRLGQILINLLNNAVKFTEHGEVILNI 738
>gi|449047540|ref|ZP_21730833.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
gi|448877405|gb|EMB12371.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
Length = 916
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|420065400|ref|ZP_14578206.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397431837|gb|EJK22508.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
Length = 898
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 178/637 (27%), Positives = 273/637 (42%), Gaps = 147/637 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
F + + + G G + V+ A T L + V
Sbjct: 513 WFHISLDLNPNAIPDTLNTD-------GLVGKRLAYVEANATAAQCTLEMLAATPLEVIY 565
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPK 791
S + SS + Q DI+LV G + D P H KL K
Sbjct: 566 SPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKLAK 600
Query: 792 LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851
++ N+ A+ A L+ +AACL + L+T R +P +
Sbjct: 601 ACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPALVA 647
Query: 852 FHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
L ++ VDDN N + L V S + A+DK +
Sbjct: 648 TSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDKAK 707
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
D MDIQMP+MDG A I + P++A+
Sbjct: 708 QLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVIAV 746
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 747 TAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|386036266|ref|YP_005956179.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
2242]
gi|339763394|gb|AEJ99614.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
2242]
Length = 830
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|378980364|ref|YP_005228505.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|402779252|ref|YP_006634798.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419972587|ref|ZP_14488015.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980265|ref|ZP_14495551.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419983491|ref|ZP_14498641.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991224|ref|ZP_14506191.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997353|ref|ZP_14512150.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001152|ref|ZP_14515809.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420008188|ref|ZP_14522679.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013715|ref|ZP_14528025.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019361|ref|ZP_14533554.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024852|ref|ZP_14538863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420029839|ref|ZP_14543667.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420035568|ref|ZP_14549231.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420042434|ref|ZP_14555927.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048142|ref|ZP_14561457.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420053213|ref|ZP_14566392.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420058687|ref|ZP_14571698.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420073224|ref|ZP_14585853.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420075588|ref|ZP_14588063.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081440|ref|ZP_14593748.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909840|ref|ZP_16339643.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421914520|ref|ZP_16344167.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424932058|ref|ZP_18350430.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425075192|ref|ZP_18478295.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082934|ref|ZP_18486031.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425085828|ref|ZP_18488921.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425093032|ref|ZP_18496116.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428932773|ref|ZP_19006343.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
gi|428940431|ref|ZP_19013515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
with UvrY [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|364519775|gb|AEW62903.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397346576|gb|EJJ39690.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350996|gb|EJJ44082.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397355123|gb|EJJ48133.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397363146|gb|EJJ55789.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397364573|gb|EJJ57203.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372677|gb|EJJ65161.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397379798|gb|EJJ71989.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397383749|gb|EJJ75883.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389053|gb|EJJ81003.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397398155|gb|EJJ89820.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402298|gb|EJJ93901.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397407585|gb|EJJ98970.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397416086|gb|EJK07265.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397416236|gb|EJK07411.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397424630|gb|EJK15528.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397436525|gb|EJK27111.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397438200|gb|EJK28718.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397448087|gb|EJK38266.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397453205|gb|EJK43267.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402540194|gb|AFQ64343.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405595395|gb|EKB68785.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405599253|gb|EKB72429.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405606337|gb|EKB79329.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611374|gb|EKB84142.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806245|gb|EKF77496.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410116240|emb|CCM82268.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410123276|emb|CCM86792.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|426302308|gb|EKV64515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
gi|426306762|gb|EKV68858.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
Length = 916
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
MS 92-3]
gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
MS 92-3]
Length = 916
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
Length = 1203
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 186/636 (29%), Positives = 282/636 (44%), Gaps = 119/636 (18%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q+DY
Sbjct: 677 MLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTLQQKDY-------- 728
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L++A A L LR I++D+L ++ +E F DKV
Sbjct: 729 ----------LEKADFSAHSL--------LR-IINDILDFSKIEAGKLELERVAFPLDKV 769
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+ L N++K E+G V L ++ +L G
Sbjct: 770 LDHALD-------------LNALKAQEKG-----VEL----LLYAPVTAGLILEGDP--- 804
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLM 605
R G N LS +A F + I + + G D +TL
Sbjct: 805 -LRLGQVLINMLS------------------NAVKFTKSGEI-ELGCEDVGERDHRITLK 844
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V DTGIGI Q +F F QAD ST+R YGGTG+GLSISK LV +M G + S
Sbjct: 845 FWVRDTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEM 904
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
VGSTFSFT F +E + + +P GLK +V+D+ P +
Sbjct: 905 GVGSTFSFTISFEIAEEAEVQPLV------IPSTLGGLKTLVIDDNPTALQIYS------ 952
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPN 783
+M S+ A+S + S++ D++L++ W+ E G ++ D +
Sbjct: 953 SVMRDFHFSVDTAASGPEGLYKLSKNPV--DLLLLD---WMMPEMDGIAVIEEIDDMVAS 1007
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
G + K P +I++ T + + K AG ++ KP +AS + +++ + +
Sbjct: 1008 GKLAKRP-VIIMMTAYAAEPMHKDIAGSNVFALLQKPFKAS---SLFDEIILAFSDEPSL 1063
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
+P S G IL+V+DN +N+ VA LK G TV+ A + + ALD + S +
Sbjct: 1064 NLLPEVSEESTDKDTG-YILLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMIDSAN 1122
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
+DA MDIQMP MDG AT+ +R+ S LP++AMTA
Sbjct: 1123 -YDAVLMDIQMPVMDGLTATKELRKRYSAT--------------------ELPVIAMTAH 1161
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+ ++ L GM+ +++KP L+ L+ + +
Sbjct: 1162 AMSGDREKSLSAGMNAHITKPIVLNELFETLSHWIE 1197
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L G K LV+DDN + + ++ F +V+ AAS L KL S + D +D MPE
Sbjct: 933 LGGLKTLVIDDNPTALQIYSSVMRDFHFSVDTAASGPEGLYKL-SKNPVDLLLLDWMMPE 991
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG I M + AKR I+ MTA +
Sbjct: 992 MDGIAVIEEIDDMVASGK------------LAKRP----VIIMMTAYAAEPMHKDIAGSN 1035
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1036 VFALLQKPFKASSLFDEIILAFSDEP 1061
>gi|423141457|ref|ZP_17129095.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379050629|gb|EHY68521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 918
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 175/628 (27%), Positives = 275/628 (43%), Gaps = 128/628 (20%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D P G + V+ A T LN + V
Sbjct: 513 WF---------HINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLNDTPVEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + + + S + + + E A + D+
Sbjct: 564 VYSPTFSALPLAHYDIMMLSVP------VTFREPLTMQHERLAKAASMTDF--------- 608
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
L+L ++ +K K GG A ++KPL ++ + L + + A + +
Sbjct: 609 --LLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQLNH--HAEPLLMDA 663
Query: 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909
S ++ VDDN N + L+ VE S A+D+ + FD
Sbjct: 664 SKI------AMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQ-FDLIL 716
Query: 910 MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969
MDIQMP+MDG A I Q+ + P++A+TA +
Sbjct: 717 MDIQMPDMDGIRACELIHQLPHQQQT--------------------PVIAVTAHAMAGQK 756
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKF 997
++ L GM+ Y++KP EEE L+ L ++
Sbjct: 757 EKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 916
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQV-DLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGQREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
Length = 911
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 177/632 (28%), Positives = 280/632 (44%), Gaps = 139/632 (21%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG+LG +L T L +TQRDY QT + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN+VLD +K+EA KL LEA+ F LRA LD+ L L + + KG+EL V VP+ V
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHEKGLELTVVCDSSVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GD R +QI+ NL+GN++KFTE+G+I ++V +R + ++ + E V S
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRV--GQRVITQSRVELEI--------QVEDS 452
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
G G+ + F+ Q++ASI +GG T
Sbjct: 453 GI-------GISEQQQTQLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + R GG +I+F S+P GSTF
Sbjct: 483 GLGLVITQK-------------LVREMGG-----------------EITFSSQPDQGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
DL P G+ V+ R A + N ++M
Sbjct: 513 MIRVQL-----------------DLNPNAPGMPRVLETLSQARIAYVEADANVASAALEM 555
Query: 732 SSSIK---DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW---KPNGH 785
S+ D S T + GL +S ++L+ IS + N +L++ + +
Sbjct: 556 LSATPLQIDYSETLE-GLKASHYP----LLLMAMPVGIS-QPELLNERLINGLLDRADNV 609
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
+ LP ++L D+ K G D I KP+ + + L + + RQ
Sbjct: 610 LMALPSPMMLL-------ADELKVRGI-DGCIAKPISLTRLLPMLLDI----HTRQVSE- 656
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+P ++ VDDN N + L++ + +SA+ A+ + +
Sbjct: 657 LPLSPRL------PLTVMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIREARQ-QSL 709
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MDIQMPE+DG A+ IR + AN PI+A+TA I
Sbjct: 710 DVILMDIQMPEIDGIRASEIIRGLPHHANT--------------------PIVAVTAHAI 749
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
++ +K GM+ Y++KP +E L + LA++
Sbjct: 750 DGEREQLIKAGMNDYLAKPIDESKLRQLLARY 781
>gi|424911053|ref|ZP_18334430.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392847084|gb|EJA99606.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 1224
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 184/666 (27%), Positives = 292/666 (43%), Gaps = 148/666 (22%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL ++L + Q+ +
Sbjct: 658 ELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKS 717
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KIEA +++L +V F+ ++DV+SL S + K IEL V +
Sbjct: 718 GNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVVRIDPS 777
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
V V+GD GRFRQI+TNLVGN+VKFTE GH+ V++ ++ E +L+ E+
Sbjct: 778 VFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLVELS------AQSAEASEAILSLRVED 831
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
+ + T+ +DKF +D+ + +
Sbjct: 832 SGIGIPSDKLETI-----------FDKFSQ-VDSSATRRH-------------------- 859
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
E TG+G+ ++ +GL V L G+I VS
Sbjct: 860 --EGTGLGLAIT------------------------VGL------VGLFNGKIDVVSEVG 887
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP---GFKGLKAVVVDEKPVRAAVTQYHLN 723
GS+F F + + D+PP + ++ +V+D+ V + L
Sbjct: 888 KGSSFEVNIPFQMTE----------RRRDVPPLSVAIENIRVLVIDDNDVNRRILTEQLQ 937
Query: 724 RL------------GIMV---------KMSSSIKDASSTAKNGL-----TSSEDKFQPDI 757
GI V + + I D NGL ++ +F
Sbjct: 938 SWCIDGHAVEGGPTGIAVLQEAAAVGLSIDAIILDYHMPVMNGLDVVERIRADRRFDDIA 997
Query: 758 ILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLAT---NISKD-ECDKAKAGGFA 813
I+ + G+++ F D H+ K + LL + ++ +D +A+ FA
Sbjct: 998 IIFLTSMDVVGDETLFT----DLNVQAHLMKPARARLLRSTLFDVVRDVRLKRARPEAFA 1053
Query: 814 DTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS-SFHQGLLRGKKILVVDDNGVNR 872
AS + + ++E KR+A VP S L+ +LV +DN VN+
Sbjct: 1054 G--------ASDGGSSRPEGPASEKKRRA--EVPTVSVRLRPSLI---DVLVAEDNDVNQ 1100
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
+V L++ G + K A+ + + MD+ MP M+G +AT+ IR E
Sbjct: 1101 IVFTQILQQTGLRFLIVGNGKKAVQAWEE-YNPAIILMDVSMPVMNGHQATQAIRTAELA 1159
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
A E H+PI+ +TA A D CL+ GMD Y+SKP E L
Sbjct: 1160 AAEGR----------------HVPIIGVTAHTQDADRDLCLQAGMDDYLSKPISPEILED 1203
Query: 993 ELAKFF 998
++A++
Sbjct: 1204 KIAQWL 1209
>gi|406879817|gb|EKD28312.1| hypothetical protein ACD_79C00343G0002 [uncultured bacterium]
Length = 652
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 231/474 (48%), Gaps = 90/474 (18%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++E ++AE+A+ AKS+FLA +SHEIRTPMNGI+GM+ L LDT+LS+ QR+ +T + C
Sbjct: 260 ELEESIIKAESANKAKSEFLANMSHEIRTPMNGIIGMIGLTLDTELSAQQRENLETVKQC 319
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+L+ LIN +LD +KIEA KLEL+ +FN+ +D + + + + KG + V +
Sbjct: 320 ADSLMNLINSILDLSKIEAGKLELKYDVFNINNTIDGIFKILNVQVALKGNTFVIDVHPE 379
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP ++GD R RQ++ NL+GN++KFTE
Sbjct: 380 VPSNLIGDELRIRQVLVNLLGNAIKFTEE------------------------------- 408
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
GQ N G+++ +N D++ ++V L
Sbjct: 409 -------GQVNLSVGIQSK--QNKSDEY------------------------IKEVELYF 435
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
+ D+GIGIP +F F Q D S+ R Y GTG+GL+ISK L+ +M G+I S+
Sbjct: 436 KISDSGIGIPEDKIHTIFDSFTQVDGSSKRRYAGTGLGLTISKKLINMMGGEIGVESQLG 495
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTF FT F K I+++ + P + LK ++ ++ + + LN+ G
Sbjct: 496 NGSTFYFTLKF---KLPAKNKIQRTADQINSPNTRPLKVLLAEDNLINRKIAVAILNKYG 552
Query: 727 IMVKMSSSIKDASSTAKNGLTSSE----DKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
V+ TA NG E +KF D+IL+ D + D G A L+
Sbjct: 553 YKVE----------TAVNGQEVIEFLKREKF--DVILM--DVQMPVMD-GLEATLIIRNS 597
Query: 783 NGHVF--KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
N + ++P + L A +D+ KAG ++ I KP + +++V+
Sbjct: 598 NEKLLDSQIPIIALTAHAFEEDKAKFIKAG--MNSFISKPFNKEQLVHEIERVV 649
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 18/142 (12%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
R K+L+ +DN +NR +A L K+G VE A + + ++ L+ FD MD+QMP M
Sbjct: 527 RPLKVLLAEDNLINRKIAVAILNKYGYKVETAVNGQEVIEFLKREK-FDVILMDVQMPVM 585
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG EAT IR +NE++++ +PI+A+TA + +K GM
Sbjct: 586 DGLEATLIIRN----SNEKLLDS-------------QIPIIALTAHAFEEDKAKFIKAGM 628
Query: 978 DGYVSKPFEEENLYRELAKFFK 999
+ ++SKPF +E L E+ + K
Sbjct: 629 NSFISKPFNKEQLVHEIERVVK 650
>gi|354724951|ref|ZP_09039166.1| hybrid sensory histidine kinase BarA [Enterobacter mori LMG 25706]
Length = 919
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 185/633 (29%), Positives = 283/633 (44%), Gaps = 138/633 (21%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L ++L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRGTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V + L N + V
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILV------------EKRALSNNKVQIEVQIR 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
TG G+ D + F+ Q++ASI +GG T
Sbjct: 451 DTG-----IGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQK------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D P KG++ V+ AA Q L
Sbjct: 513 WF---------HINLDLNPNVMTDGPVTDCLKGMRLAYVEPN---AAAAQCTL------- 553
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDI--ILVEK-DCWISGEDSGFNAQL-LDWKPNGH 785
D ST T E + P + VE D + G F A L + +
Sbjct: 554 -------DVLST-----TPLEVVYSPTFSALAVEHYDILLMGIPVTFTADLTMQQERLAK 601
Query: 786 VFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
+ +LLA ++ ++ K G A ++KPL A+ + L TE R +
Sbjct: 602 AASMTDYLLLALPCHAQINAEELKNDGAA-ACLLKPLTATRLLPAL-----TEYCRLSQH 655
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
+P S Q L ++ VDDN N + L+ VE S A+++ +
Sbjct: 656 ALPLVSD-EQKL--PMSVMAVDDNPANLKLIGVLLEDQVQHVELCTSGAQAVEQAKQMQ- 711
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
FD MDIQMP MDG A IRQ+ + P++A+TA
Sbjct: 712 FDLILMDIQMPGMDGIRACELIRQLPHQQQT--------------------PVIAVTAHA 751
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ ++ L GM+ Y++KP +EE L+ L ++
Sbjct: 752 MAGQKEKLLSAGMNDYLAKPIDEEKLHSLLVRY 784
>gi|419764461|ref|ZP_14290701.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397743044|gb|EJK90262.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 916
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 276/639 (43%), Gaps = 151/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAVRIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+TNLVGN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D G G + V+ A T L + V
Sbjct: 513 WF---------HISLDLNPNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + SS + Q DI+LV G + D P H KL
Sbjct: 564 IYSPTF------------SSLAEAQYDILLV-----------GIPVSMRDLSP--HREKL 598
Query: 790 PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849
K ++ N+ A+ A L+ +AACL + L+T R +P
Sbjct: 599 AKACAMSDNVLLALPCHAQVSAEA-------LKRDGVAACLLKPLTTT------RLLPAL 645
Query: 850 SSFHQGLLRGK-----------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ L ++ VDDN N + L V S + A+DK
Sbjct: 646 VATSHALASAPLMQIDSHKLPMTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A I + P++
Sbjct: 706 AKQLQ-MDLILMDIQMPDMDGIRACELIHHLSHHQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 745 AVTAHALEGLREKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
Length = 919
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 178/629 (28%), Positives = 287/629 (45%), Gaps = 130/629 (20%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L ++L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V + L N + V
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILV------------EKRALSNNKVQIEVQIR 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
TG G+ D + F+ Q++ASI +GG T
Sbjct: 451 DTG-----IGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQK------------------------------LVKEMGGDISFHSQPNKGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLP--PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D P KG++ V+ AA Q L+ L
Sbjct: 513 WF---------HINLDLNPNVLTDGPITDCLKGMRLAYVEPN---AAAAQCTLDVLS--- 557
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
++ ++ S + L DI+L+ +GE + +L +
Sbjct: 558 --TTPLEVIYSPTFSALAVE----HYDILLMGIPVTFTGELTMQQERL------AKAAAM 605
Query: 790 PKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
+LLA ++ ++ K G A ++KPL A+ + L TE R + + +P
Sbjct: 606 TDYLLLALPCHAQINAEELKNDGAA-ACLLKPLTATRLLPAL-----TEYCRLSNQPLPL 659
Query: 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC 908
+ H+ + ++ VDDN N + L+ VE S A+++ + FD
Sbjct: 660 VNDEHKLPM---TVMAVDDNPANLKLIGVLLEDQVQHVELCDSGAQAVEQAKQMQ-FDLI 715
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MDIQMP MDG A IRQ+ + P++A+TA +
Sbjct: 716 LMDIQMPGMDGIRACELIRQLPHQQQT--------------------PVIAVTAHAMAGQ 755
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKF 997
++ L GM+ Y++KP +EE L+ L ++
Sbjct: 756 KEKLLSAGMNDYLAKPIDEEKLHSLLLRY 784
>gi|386848326|ref|YP_006266339.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
gi|359835830|gb|AEV84271.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
Length = 1418
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 178/619 (28%), Positives = 274/619 (44%), Gaps = 110/619 (17%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+F+A +SHEIRTPMNG++G+ +LLLDTDL + QRDY T Q AL+ +IN++LD +
Sbjct: 779 KSEFVANMSHEIRTPMNGVIGLTSLLLDTDLDARQRDYLTTVQNSADALLNVINDILDFS 838
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KL+++ V F+ RA+++DV+SL + ++ KG+E+A ++ +P + GD R RQI
Sbjct: 839 KIEAGKLDIDPVDFDPRAVVEDVVSLLAATAQAKGLEIAAVITPAIPPALNGDAHRIRQI 898
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+TNLV N+VKFT G + V V + E +GV +T G
Sbjct: 899 LTNLVSNAVKFTAHGEVVVTVEIGE-----------------PRDGVREVTFAVTDTGIG 941
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
+ A D+ HL +A Q++AS GG TG+G+ +S Q
Sbjct: 942 IPA-------DRQAHLFEAF-TQADASTTRRY---GG------------TGLGLTISRQ- 977
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
LV LM G I S P GS F FT
Sbjct: 978 -----------------------------LVGLMGGSIGLDSEPGRGSRFHFTLPLPGAG 1008
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
+ S + P ++ +VVD+ V L M + +
Sbjct: 1009 ----APLPGSHPD---PELTDVRVLVVDDNSTNRTVVTGLLTGW----SMDAHAVADAGA 1057
Query: 742 AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
A L + D P + + D + G D A+++ P + + L +L +
Sbjct: 1058 ALTALREAADAGTPYAVAL-LDMHMPGLDGIDLARIIHGDP---LLQGTSLAMLTSTNQA 1113
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK 861
E A+ G + KP+R A L+ L R P +S +
Sbjct: 1114 GEAQAARDAGVL-AYLTKPVR----AIQLRTTLLQLLGRTPASPAPEQTSIAERPGSTAH 1168
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+ +DN VN+ V L G T + AA + A+ LQ+ H +DA MD QMP +DG++
Sbjct: 1169 VLIAEDNEVNQEVTREMLAALGYTCDIAADGEQAVRMLQTRH-YDAVLMDCQMPVLDGYQ 1227
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
AT IR++ + N +P++A+TA V+ + C GMD +
Sbjct: 1228 ATEVIRRLPAPRNA-------------------VPVIALTASVLASDQQRCRSAGMDDVL 1268
Query: 982 SKPFEEENLYRELAKFFKS 1000
+KP + +L L +F +
Sbjct: 1269 TKPLRKHDLQAYLTRFLPN 1287
>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
Length = 927
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 175/637 (27%), Positives = 273/637 (42%), Gaps = 130/637 (20%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G +L T L+++Q DY QT + L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLL 340
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +K+EA KL LE + F + +L++V++L + + KG+E+ + + K+P V
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q++TNLVGNS+KFTERG+I V V E ++ D D + T G+
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSV---EMRALRDDVIDLQFMVRDTGIGISER 457
Query: 552 GTGQ-FNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
Q F S +A+ R C
Sbjct: 458 QQAQLFQAFSQADASISR--------------------------------------CYGG 479
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TG+G+ ++ + LV M G+IS SR GST
Sbjct: 480 TGLGLVITQK------------------------------LVSHMGGEISLTSRLHQGST 509
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
F FT E D + S ++++ AA+ Q L + G+ V
Sbjct: 510 FWFTLRL-HTTELPLNDGYNADS------LNHRHLLLIEPNMQAAAIVQQTLVQSGLEVT 562
Query: 731 MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLP 790
S+I + L + + + LVE W+ + L N V
Sbjct: 563 YRSAIPEEQHVYDYVLLNLAPSKETNPTLVE--LWVQ--------RALAMTHNVIVGVPS 612
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS 850
+ LA + + + I KPL L Q L+ + + A +P
Sbjct: 613 TELALADQLMQ---------RYPVKCISKPLSRKK----LLQTLAAQQPQLANTSLPKPQ 659
Query: 851 SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910
+ L ++ VDDN N + L++ V S + A+++ QS FD M
Sbjct: 660 ADKLPLC----VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQS-RQFDIILM 714
Query: 911 DIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970
DIQMP MDG A + I+Q++ RD P++A+TA + D
Sbjct: 715 DIQMPHMDGVTACKAIKQLK-----------------GYRDT---PVIAVTAHAMAGERD 754
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKF---FKSKPLS 1004
LK GMD Y++KP EE L + L + +SKP++
Sbjct: 755 RLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKPVA 791
>gi|345885949|ref|ZP_08837238.1| hypothetical protein HMPREF0178_00012 [Bilophila sp. 4_1_30]
gi|345038243|gb|EGW42718.1| hypothetical protein HMPREF0178_00012 [Bilophila sp. 4_1_30]
Length = 867
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 169/633 (26%), Positives = 273/633 (43%), Gaps = 131/633 (20%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR--DYAQTAQICGKALIA 432
A+ A+ AK FL+ +SHEIRTPMN I+GM A + + + R D K L++
Sbjct: 340 AQQANTAKRDFLSRMSHEIRTPMNAIIGM-ATVAAAHIQNHGRVADCLHKISFSSKHLMS 398
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
L+N+VLD +KIE+ KL + F+L ++D ++S+ ++ ++G +V +S E ++
Sbjct: 399 LLNDVLDMSKIESGKLAVHHEAFDLPKLIDSIVSIMHPQTESQGQRFSVALSGIEEERLV 458
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
GDP R QI+ NL+ N+ KFT G +K+ ++++ NGG S
Sbjct: 459 GDPLRINQILLNLLSNARKFTPEGG-SIKLEISQKRK-----------NGGVLMRFTVSD 506
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
TG GL A R ++ F+ Q+++SI
Sbjct: 507 TG-----IGLSEAFQRRLFNPFE--------QADSSI----------------------- 530
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
S+ YGGTG+GL+I+ LV LM G I S+ G+ F+
Sbjct: 531 ----------------------SQKYGGTGLGLAITHNLVTLMNGTIEVRSKEHEGTCFT 568
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPG---------FKGLKAVVVDEKPVRAAVTQYHLN 723
LPP + +K ++VD+ L
Sbjct: 569 VELPLA-----------------LPPNGHVPKKEQVARDMKVLIVDDDLDTCEYAALLLR 611
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
R+GI K + ++++A + + E D+ L++ W E G A +
Sbjct: 612 RMGIAAKWALTVREALDQV---VDAHERGTGYDVCLID---WKMPEMDGIEATRRIRETA 665
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
G P+ +++ T ++ A+ + KP +S + L V + A
Sbjct: 666 G-----PETLIIITAYDWTSIEQRARKAGANAFLSKPFFSSALYHTLSAVSQKKPASVAA 720
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL--QS 901
P G+ LRG+ +L+V+DN +NR + LK +GA+ CA + + A+D +
Sbjct: 721 ELEP-GTEGQTPSLRGRHVLLVEDNDLNREITEEILKMWGASFTCAENGQVAVDIFTASA 779
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
P FDA MDIQMP +DG+ AT IR S ++ +PI+AMT
Sbjct: 780 PGTFDAILMDIQMPVLDGYAATAAIRASHSPESQT------------------IPIIAMT 821
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
A+ H L GM+ ++SKP + E LY+ L
Sbjct: 822 ANAFHEDVVSALSAGMNNHISKPIDPERLYQVL 854
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 847 PNGS-SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH-- 903
PNG + + R K+L+VDD+ AA L++ G + A + + ALD++ H
Sbjct: 577 PNGHVPKKEQVARDMKVLIVDDDLDTCEYAALLLRRMGIAAKWALTVREALDQVVDAHER 636
Query: 904 --CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D C +D +MPEMDG EATRRIR+ TA + L + +T
Sbjct: 637 GTGYDVCLIDWKMPEMDGIEATRRIRE------------------TAGPETL----IIIT 674
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
A + K G + ++SKPF LY L+ + KP S A
Sbjct: 675 AYDWTSIEQRARKAGANAFLSKPFFSSALYHTLSAVSQKKPASVA 719
>gi|418407316|ref|ZP_12980634.1| two component sensor kinase/response regulator hybrid [Agrobacterium
tumefaciens 5A]
gi|358006460|gb|EHJ98784.1| two component sensor kinase/response regulator hybrid [Agrobacterium
tumefaciens 5A]
Length = 1232
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 183/664 (27%), Positives = 292/664 (43%), Gaps = 138/664 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++Q L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL ++L + Q+ +
Sbjct: 664 EELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVK 723
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G AL+ +IN++LD +KIEA +++L +V F+ ++DV+SL S + K IEL V +
Sbjct: 724 SGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDP 783
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
V V+GD GRFRQ++TNLVGN+VKFTE GH+ +++ ++ ET+L+ E
Sbjct: 784 SVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIELS------AQSAEASETILSLRVE 837
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
+ SG G+ A +DKF +D + +
Sbjct: 838 D----SGI-------GIPADKLETIFDKFSQ-VDGSATRRH------------------- 866
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
E TG+G+ +I+ LV L G I+ VS
Sbjct: 867 ---EGTGLGL------------------------------AITVGLVGLFDGTINVVSEV 893
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GSTF F +V E K+ + L + ++ +V+D+ V + L
Sbjct: 894 GKGSTFEVNIPF-----HVTE--KRRDAPLLAMAIEDIRVLVIDDNDVNRRILTEQLKTW 946
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
GI +++D S ++ F D I+++ + +G + + + +
Sbjct: 947 GI---DGHAVQDGPSGIAVLQEAASLGFTIDAIILDYHMPVM---NGLDV-VERIRADSR 999
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVI----MKPLRASMIAACLQQV---LSTEN 838
+ + L + ++ DE F D + MKP RA ++ + L V + +
Sbjct: 1000 FDDIAIVFLTSMDVVGDES------LFTDLSVQAHLMKPARARLLRSTLFDVVRDVRQKR 1053
Query: 839 KRQAGRGVPNGSS-----FHQGLLRGKK-------------------ILVVDDNGVNRMV 874
RQ +G+ +G S G K+ +LV +DN VN++V
Sbjct: 1054 ARQDPQGLGSGGSDAPVRPDNGPTDKKRRVVSPPTMVPDRRRPCLVDVLVAEDNDVNQIV 1113
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
L++ G + K A+ + H MD+ MP M+G +AT IR E A
Sbjct: 1114 FTQILQQAGLRFLIVGNGKKAVQAWEE-HNPAVILMDVSMPVMNGHQATMAIRSAEQAAA 1172
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
D H+PI+ +TA A + C+ GMD Y+SKP E L ++
Sbjct: 1173 ----------------DGRHVPIIGVTAHTQDADRELCIAAGMDDYLSKPISPEILEDKI 1216
Query: 995 AKFF 998
A++
Sbjct: 1217 AQWL 1220
>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|386315116|ref|YP_006011281.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Shewanella putrefaciens 200]
gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Shewanella putrefaciens 200]
Length = 1234
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 190/641 (29%), Positives = 280/641 (43%), Gaps = 129/641 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTPQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI QE++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
VGSTFSFT F +E E + +P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTISFEIAEEAKVEPLV------VPEKLNNLRTLVVDDNPTALQIYS------A 984
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN--AQLLDWKPNG 784
+M + A+S A+ S D D++L++ W+ E G + + + G
Sbjct: 985 VMRDFHFEVDTAASGAEALYKLSRDPI--DLLLLD---WMMPEMDGSDVISAIDTMVAEG 1039
Query: 785 HVFKLPKLILL-ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---NKR 840
+ K P +I++ A + + + A FA V+ KP +AS + + + E N
Sbjct: 1040 RLDKRPVIIMMTAYSAEPLQYEVESANVFA--VLQKPFKASSLFDEIIAAFADEPRLNVV 1097
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
Q+ G H GL +L+V+DN +N+ VA LK G V A + + ALD +
Sbjct: 1098 QSMEETDVGE--HTGL-----VLLVEDNFINQQVATELLKSAGYEVVLADNGQVALDIID 1150
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
S FDA MDIQMP MDG A R +R+ S LPI+AM
Sbjct: 1151 S-RPFDAVLMDIQMPVMDGLTAARALRERYSPE--------------------ELPIIAM 1189
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
TA + ++ L GM+ +++KP L+ L + + K
Sbjct: 1190 TAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIQHK 1230
>gi|311278255|ref|YP_003940486.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
gi|308747450|gb|ADO47202.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
Length = 915
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 179/638 (28%), Positives = 277/638 (43%), Gaps = 149/638 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V + L N + V
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILV------------EKRALSNNKVQVEVQIR 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
TG G+ +D + F+ Q++ASI +GG T
Sbjct: 451 DTG-----IGIPESDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV+ M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
F DL P VV E P + L +
Sbjct: 513 WFHINL-----------------DLNPN-------VVSEGPATDCLAGKRLAYVEANATA 548
Query: 732 SSSIKDASSTAKNGLTSS-------EDKFQPDIILVE-----KDCWISGEDSGFNAQLLD 779
+ + D +T + S +D++ DI+LV +D + E + D
Sbjct: 549 AQATLDLLATTPLDVVYSPTFSALPDDRY--DILLVAIPVSMRDLQLHKEKLMQACLMTD 606
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ L+L ++ + + K G A ++KPL ++ + L +
Sbjct: 607 Y-----------LLLALPCHAQVDAEALKQNGAA-ACLLKPLTSTRLLPALTDYCAL--- 651
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
RQ P ++ + ++ VDDN N + L+ VE S + AL++
Sbjct: 652 RQ-----PEPTALPENNKLPMTVMAVDDNPANLKLIGVLLEDQVQHVELCDSGQQALNRA 706
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ FD MDIQMPEMDG A I Q+ + P++A
Sbjct: 707 KQMQ-FDLILMDIQMPEMDGIRACELIHQLPHQQKT--------------------PVIA 745
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+TA + ++ L GM+ Y++KP EE L L ++
Sbjct: 746 VTAHAMAGQREKLLSAGMNDYLAKPIEENKLRSLLLRY 783
>gi|358008818|gb|AET99086.1| sensor kinase [Pantoea agglomerans pv. gypsophilae]
Length = 909
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 181/639 (28%), Positives = 280/639 (43%), Gaps = 153/639 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG+LG +L T L +TQRDY QT + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN+VLD +K+EA KL LEA+ F LRA LD+ L L + + +KG+EL V VP+ V
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GD R +QI+ NL+GN++KFTE+G+I ++V +R + +T + E V S
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRV--GQRVITQTRVELEI--------QVEDS 452
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
G G+ + F+ Q++ASI +GG T
Sbjct: 453 GI-------GISEQQQTQLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + R GG +I+F S+P GSTF
Sbjct: 483 GLGLVITQK-------------LVREMGG-----------------EITFSSQPDQGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
DL P G+ V+ R A + N ++M
Sbjct: 513 VIRVQL-----------------DLNPNAPGMPRVLDALSHARIAYVEADANVASAALEM 555
Query: 732 SSSIK---DASSTAKNGLTSSE----------DKFQPDIILVEKDCWISGEDSGFNAQLL 778
S+ D S T + GL +S D QP+++ + NA LL
Sbjct: 556 LSATPLQIDYSETLE-GLKASHYPLLLMAMPVDISQPELL----------NERMINA-LL 603
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
D N + LP ++L D+ K G D I KP+ + + L + +
Sbjct: 604 DRADNV-LMALPSPMMLL-------ADELKVRGI-DGCIAKPISLTRLLPMLLDL----H 650
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
RQ +P ++ VDDN N + L++ + +SA+ A+ +
Sbjct: 651 TRQISE-LPLSPRL------PLTVMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIRE 703
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP++DG A+ IR M A+ PI+
Sbjct: 704 ARQ-QSLDVILMDIQMPDIDGIRASEIIRSMPHHAST--------------------PIV 742
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA I ++ +K GM+ Y++KP +E L + LA++
Sbjct: 743 AVTAHAIDGEREQLIKAGMNDYLAKPIDESKLRQLLARY 781
>gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea
DSS12]
gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea
DSS12]
Length = 1235
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 199/681 (29%), Positives = 294/681 (43%), Gaps = 139/681 (20%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDF--HKMQEL-----KVRAEAADVAKSQFLATVSH 391
+L G +V Y + +V D HK E+ K AE+A+++KS+FLA +SH
Sbjct: 672 WLLSRGRVVEYTVDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSH 731
Query: 392 EIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451
EIRTPMN I+GML L T+L++ Q DY LD+A A+ L
Sbjct: 732 EIRTPMNAIIGMLQLAQRTELTAKQEDY------------------LDKAGFSAQSL--- 770
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
LR I++D+L ++ +E F DKV + L N++K
Sbjct: 771 -----LR-IINDILDFSKIEAGKLELEKVAFPLDKVLDHALD-------------LNALK 811
Query: 512 FTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571
++G V L ++ +L G R G N LS
Sbjct: 812 SQQKG-----VEL----LLYAPVTAGLILEGDP----LRLGQVLINMLS----------- 847
Query: 572 DKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMVCVEDTGIGIPLSAQERVFMPFMQ 629
+A F I + + G D +TL V DTGIGI Q +F F Q
Sbjct: 848 -------NAVKFTQTGEI-ELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQ 899
Query: 630 ADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689
AD ST+R YGGTG+GLSISK LV +M GQ+ S VGSTFSFT F +E
Sbjct: 900 ADGSTTRKYGGTGLGLSISKHLVSMMGGQMQVQSEMGVGSTFSFTISFEIAEE------A 953
Query: 690 QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTS- 748
+ K +P LK +VVD+ P L I + TA NG +
Sbjct: 954 EVKPMIVPERLGSLKTLVVDDNP----------TALQIYATVMRDFHFEVDTAANGSEAL 1003
Query: 749 -SEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPNGHVFKLPKLILL---ATNISKD 802
+K D++L++ W+ E G +L +G + K P +I++ A K+
Sbjct: 1004 YKLEKSSVDLLLLD---WMMPEMDGIQVIEELDRMVADGRLDKRPIVIMMTGYAAEPLKE 1060
Query: 803 ECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSF--HQGLLRGK 860
+ D++ ++ KP +AS + + + E K + V H G+
Sbjct: 1061 DADRSNIYA----MLQKPFKASALFDEIISAFTEEPKVNSVIEVEAEEVVDTHVGM---- 1112
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+L+V+DN +N+ VA LK G V+ A + + A+D + + FDA MDIQMP MDG
Sbjct: 1113 -VLLVEDNFINQQVATELLKSAGYEVDVADNGQIAIDMI-AEKDFDAVLMDIQMPVMDGL 1170
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
AT+ IR+ S LPI+AMTA + ++ L GM+ +
Sbjct: 1171 TATKEIRKHFSLQ--------------------ELPIIAMTAHAMSGDREKSLSAGMNAH 1210
Query: 981 VSKPFEEENLYRELAKFFKSK 1001
++KP L+ L+ + K K
Sbjct: 1211 ITKPIVLNELFDTLSYWIKQK 1231
>gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi
ATCC 51908]
gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1245
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 189/642 (29%), Positives = 285/642 (44%), Gaps = 125/642 (19%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M E K AE+A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q DY
Sbjct: 720 MLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTPQQEDY-------- 771
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
LD+A A+ L LR I++D+L ++ +E F DKV
Sbjct: 772 ----------LDKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVSFPLDKV 812
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+ L N++K E+G V L ++ +L G
Sbjct: 813 LDHALD-------------LNALKAQEKG-----VEL----LLYAPVTAGLILEGDP--- 847
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLM 605
R G N LS +A F + I + + G D +TL
Sbjct: 848 -LRLGQVLINMLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLK 887
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V DTGIGI QE +F F QAD ST+R YGGTG+GLSISK LV +M G + S
Sbjct: 888 FWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSEM 947
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
VGSTFSFT F +E + K +P LKA+VVD+ P + +
Sbjct: 948 GVGSTFSFTISFEIAEE------AEVKPMIVPAKLANLKALVVDDNPTALQIYSTIMQDF 1001
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPN 783
V ++S +A K G +S D++L++ W+ E G +L +
Sbjct: 1002 KFDVDTAASGSEA--IYKLGKSSV------DLLLLD---WMMPEMDGIAVIEELDRMVAD 1050
Query: 784 GHVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
G + P +I++ A K++ DK+ ++ KP +AS A +++S
Sbjct: 1051 GRLDSRPIIIMMTAYAAEPLKEDADKSNIYA----MLQKPFKAS---ALFDEIISAFVDA 1103
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
V + + G +IL+V+DN +N+ VA LK G V+ A + + ALD +
Sbjct: 1104 PKLNPVKELTEEKVNEVSG-RILLVEDNFINQQVATELLKSAGYEVDVADNGQIALDMI- 1161
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ + ++A MDIQMP MDG ATR +R+ +++ LP++AM
Sbjct: 1162 ADNDYEAVLMDIQMPVMDGLTATRELRKHYNQS--------------------ELPVIAM 1201
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
TA + ++ L GM+ +++KP L+ L+ + + P
Sbjct: 1202 TAHAMSGDREKSLDAGMNAHITKPIVLNELFDTLSYWINTNP 1243
>gi|383761056|ref|YP_005440038.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381324|dbj|BAL98140.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1523
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 134/407 (32%), Positives = 198/407 (48%), Gaps = 52/407 (12%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
DVTL V DTGIGIP +F F+Q D+ST+R YGGTG+GL+ISK LVELM G+I
Sbjct: 1155 DVTLRFVVRDTGIGIPKEKLPSIFEKFVQVDASTTRRYGGTGLGLAISKRLVELMGGEIG 1214
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED---LPPGFKGLKAVVVDEKPVRAAV 717
S GSTF FT ++QS E LP G++ ++VD+ +
Sbjct: 1215 VESEVGRGSTFWFTVKL----------LRQSGVEQKPSLPDTLHGIRVLIVDDNATNREI 1264
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP------DIILVEKDCWISGEDS 771
+ L+ G M + ++ A L + + +P D+ + E D + G
Sbjct: 1265 LRTQLSAWG----MEPDEAEDAAAALRKLEEALQEGKPYRLAILDLQMPEIDGIMLGRQI 1320
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
+ + F+ +LI++++ E GFA +MKP+R S + ++
Sbjct: 1321 RSDER----------FRSLELIMMSSMGQDGEARNVLNNGFA-AYLMKPVRQSDLFNTVR 1369
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
QVL+ R G+ N + ++LV +DN VN+ VA G L++ GA E S
Sbjct: 1370 QVLAQNALRLGGKSSENKPVIPKLSTPNVRVLVAEDNAVNQQVALGILRRMGAHAEVVGS 1429
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+++ LQ +D MD+QMP+MDG EATRRIR E+ G RD
Sbjct: 1430 GAESIEALQQ-APYDIVLMDVQMPDMDGLEATRRIRNGEA--------------GETARD 1474
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA + + D CL GM+ YVSKP + L++ L K+
Sbjct: 1475 ---IPIIAMTAHALQSDRDRCLAAGMNDYVSKPVRPQELHQVLEKWL 1518
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 114/162 (70%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
+++ + +EL +AE A+ AKS+FLA +SHEIRTPMNG++GM LLL+T+L+ QR Y
Sbjct: 985 LQEALKRAEELAAQAEQANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETELNEEQRRYV 1044
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
+T + G+ L+A+IN++LD +KIEA KLELE + F+L +LDD + + K++ K +E
Sbjct: 1045 ETIRSSGETLLAIINDILDISKIEAGKLELETLDFDLIDLLDDFAATLAVKAQEKRLEFI 1104
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ P + GDPGR RQ++TNL N+++FTE+G + V+V
Sbjct: 1105 CAADPETPRHLRGDPGRLRQVLTNLAANALRFTEKGEVSVRV 1146
>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
Length = 1266
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 211/411 (51%), Gaps = 51/411 (12%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S +V L ++DTGIGI E++F PF QAD+ST+R+YGGTG+GL I K LVE+M G+
Sbjct: 671 SGEVKLRFFIKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGGE 730
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAV 717
I S P+ GSTFSFTA+F + K+++ E +PP G +GL +VVD+ +
Sbjct: 731 IRVESEPEKGSTFSFTAIFHRQP-------KKTEREFIPPHGLQGLNVLVVDDCKDSQNI 783
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
+ L G V+ SI A ++ + L E + P I LV D + G D G A
Sbjct: 784 MEKMLESFGFKVE---SISSAQASLQR-LREDETRENP-IDLVMMDWLMPGLD-GIEASS 837
Query: 778 L---DWKPNGHVFKLPKLILLA--TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+ D K N +P +++ A +K GF + KP+ S + +
Sbjct: 838 IIRDDLKLN-----VPIIMMTAFGNETQMLYAEKVGVNGF----LTKPICQSTLFDAIMD 888
Query: 833 VLSTENKR--QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
+ + + + + S H+ L+G ++LV +DN N+ +A L++ G V+
Sbjct: 889 AFGKKRAKSLKEKKHITTRVSIHKKRLKGFRVLVAEDNITNQEIALAILEEAGLVVKIVN 948
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ K A+D ++ FDA MDIQMP MDG+EATR+IR+ D K
Sbjct: 949 NGKEAVDAVRESQ-FDALLMDIQMPVMDGYEATRQIRK----------------DAEFK- 990
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LPI+AMTA + +ECLK GM+GY+ KP ++ L+ L + K++
Sbjct: 991 ---DLPIIAMTAHAMKGDEEECLKAGMNGYIPKPVSQDMLFNVLWRELKNR 1038
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 104/175 (59%), Gaps = 7/175 (4%)
Query: 353 GAAIHIVKVEDDFHKMQEL-------KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
G AI ++ D M+ L K +AE A AK +FLA +SHEIRTPMNGI+
Sbjct: 484 GNAIMLIAEGRDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASE 543
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
LL + D+S + Y + +L+ +IN++LD +KIEA KL+LE F + ++D ++
Sbjct: 544 LLSNEDISDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLV 603
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
++F ++ K IEL V + ++P + GD R QI+ NLV N+VKFT++G I +
Sbjct: 604 NMFFHRTSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIII 658
>gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|378710232|ref|YP_005275126.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
Length = 1238
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 192/645 (29%), Positives = 279/645 (43%), Gaps = 135/645 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY + A ++
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSAQS 769
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L LR I++D+L ++ +E F DKV +
Sbjct: 770 L--------------------------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L NS+K E+G + + + ++K D
Sbjct: 803 HALD-------------LNSLKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI Q+++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
VGSTFSFT FE + +K E L P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTI--------SFEIAEAAKIEPLVVPEKLNSLRTLVVDDNPTALQIYS----- 983
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN--AQLLDWKP 782
+M + A+S A+ S D++L++ W+ E G + + +
Sbjct: 984 -SLMRDFHFEVDTAASGAEALYKLSRAPI--DLLLLD---WMMPEMDGSDVVSAIDTMVA 1037
Query: 783 NGHVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-- 837
G + K P +I++ A + E D A FA V+ KP +AS + + + E
Sbjct: 1038 EGRLAKRPVIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPR 1093
Query: 838 -NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
N Q V H GL +L+V+DN +N+ VA LK G V A + + AL
Sbjct: 1094 LNVVQPMVEVQVEDGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVAL 1148
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
D + S FDA MDIQMP MDG A R +R+ S + LP
Sbjct: 1149 DTIDS-RPFDAVLMDIQMPVMDGLTAARALRERFSADD--------------------LP 1187
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA + ++ L GM+ +++KP L+ L + K K
Sbjct: 1188 IIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHK 1232
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNSLRTLVVDDNPTALQIYSSLMRDFHFEVDTAASGAEALYKL-SRAPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGSDVVSAIDTMVAEGR------------LAKRP----VIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|383761012|ref|YP_005439994.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381280|dbj|BAL98096.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1606
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 129/169 (76%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++ + H+ ++L V A+AA AKS+FL+ +SHEIRTP+NG++GM LLLDT L+S QR Y
Sbjct: 1065 ELAEALHRAEQLAVEAQAASRAKSEFLSVMSHEIRTPLNGVIGMTGLLLDTPLTSEQRQY 1124
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+ A+ G+ L+ALIN++LD +KIEARKLELE + F+LRA+++D + + + +++ KG+EL
Sbjct: 1125 AEIARTSGETLLALINDILDFSKIEARKLELERLRFDLRAMVEDAVDILAGRAQAKGLEL 1184
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
FV + P +V+GDPGR RQI+ NL GN++KFTE+G + ++V +A T
Sbjct: 1185 VCFVEPEAPTYVIGDPGRLRQIVLNLAGNAIKFTEQGEVVIRVGVAAET 1233
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 196/422 (46%), Gaps = 54/422 (12%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+I + + + VTL V+DTGIGIP R+F PF Q DSST+R +GGTG+GL IS
Sbjct: 1224 VIRVGVAAETATHVTLRFTVKDTGIGIPSDRLHRLFQPFSQVDSSTTRRFGGTGLGLVIS 1283
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L ELM G++ S P VGS F FTAV KC D ++ L + +VV
Sbjct: 1284 KQLAELMGGEVGVESTPGVGSVFWFTAVVEKCA-----DAGEAPETSL--DLHHARLLVV 1336
Query: 709 DEKP-----VRAAVTQYHLNRLGIMVKMS---SSIKDASSTAKNGLTSSEDKFQPDIILV 760
D+ V VTQ++ R V S +++A++ + D PD +
Sbjct: 1337 DDNDANRLLVHTLVTQWN-GRCDEAVNAHHALSMLREAAAQGDPYALALLDMQMPDADGL 1395
Query: 761 EKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKP 820
WI ED V LIL+ + + ++ + FA I KP
Sbjct: 1396 TLASWIR-EDP--------------VLAQTPLILITSLGYQGAAEQDRL--FA-AQITKP 1437
Query: 821 LRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALK 880
LR S + Q L+ ++++ + + R +IL+ +DN VN+ VA LK
Sbjct: 1438 LRQSQLRE--QLALALGYRQRSLQPSTTAAVVAPPPGRPLRILLAEDNVVNQKVALTMLK 1495
Query: 881 KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
K G + + A+ + AL L S +D MD +MPEMDGFEAT IR E+ ++N
Sbjct: 1496 KLGYSADAVANGREALAAL-SEINYDLVLMDCEMPEMDGFEATLHIRSGEAG----VLNP 1550
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+PI+AMTA + + CL GM+ YVSKP + L L ++
Sbjct: 1551 S-------------VPIIAMTAHAMQGDRERCLAVGMNDYVSKPVQLSTLSTALERWLSL 1597
Query: 1001 KP 1002
+P
Sbjct: 1598 EP 1599
>gi|398800953|ref|ZP_10560211.1| signal transduction histidine kinase [Pantoea sp. GM01]
gi|398093502|gb|EJL83882.1| signal transduction histidine kinase [Pantoea sp. GM01]
Length = 909
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 176/637 (27%), Positives = 281/637 (44%), Gaps = 149/637 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G +L T LS+ QRDY T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTGLSTNQRDYMSTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN+VLD +K+EA KL LE++ F LRA LD+ L L + + +KG+E+ V + +VP+ V
Sbjct: 343 SIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHDKGLEITVCLEKQVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QI+ NL+GN++KFTE GHI ++V + R++ T + E ++ T G+
Sbjct: 403 IGDPLRLQQIMINLIGNAIKFTEHGHIDLRVEV--RSLSATRVELEIQVH-DTGIGISEQ 459
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
Q + F+ Q++ASI +GG T
Sbjct: 460 QQSQL--------------FQAFR--------QADASITR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G+I+F SRP GSTF
Sbjct: 483 GLG------------------------------LVITQKLVSEMGGEIAFHSRPNQGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV---VVDEKPVRAAVTQYHLNRLGIM 728
++ D+ + +P L+A ++ P A Q L+ +
Sbjct: 513 WV---------HIHLDLN-PNAPAIPRMLDDLRATPLAYIEPHPAVAKAVQEMLSITPLQ 562
Query: 729 VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
V+ SS+++ T L +P + D I Q L + +
Sbjct: 563 VQHFSSLEELPDTHFPLLLMGLPVTEPHPATL-PDALI---------QRLRGHADSVLLA 612
Query: 789 LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848
LP ++L FAD LRA IA C+ + +S R +P
Sbjct: 613 LPSDMML----------------FADD-----LRARGIAGCIAKPVSL------TRLLPM 645
Query: 849 GSSFH----QGLLRGKK----ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
H L RG + ++ VDDN N + L++ + +A+ A+ + +
Sbjct: 646 LLDLHDWQRDALPRGARQPLTVMAVDDNPANLKLIGALLEEQVQHIILCDNAEQAIRQAR 705
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
H D MDIQMP++DG A+ IR + A PI+A+
Sbjct: 706 L-HKLDVILMDIQMPDIDGIRASEIIRSLPLHATT--------------------PIVAV 744
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
TA + + + GM+ Y++KP +E+ L + L ++
Sbjct: 745 TAHALDGERAQLINAGMNDYLAKPIDEDKLSQLLQRY 781
>gi|57282048|emb|CAD24778.1| histidine kinase-like protein [Oryza sativa]
Length = 182
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 129/201 (64%), Gaps = 21/201 (10%)
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
V F+LR + DD+LSLF K++ KG+ELAV+VSD+VP+ ++GDPGR RQIITNLVGNS+K
Sbjct: 2 TVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIK 61
Query: 512 FTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571
FTERGHI++ VH+ E M + + +G NTLSG A+ R SW
Sbjct: 62 FTERGHIYLTVHVVEEVMSCLEVE---------------TGIQNTNTLSGYPVANRRCSW 106
Query: 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQAD 631
+ + L + E S S + S+ ++L++ VEDTG+GIP AQ RVF PFMQ
Sbjct: 107 ESIR-LFNRELHSSEKSFAPI-----ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVG 160
Query: 632 SSTSRHYGGTGIGLSISKCLV 652
S +R +GGTGIGLSI KCLV
Sbjct: 161 PSIARIHGGTGIGLSIXKCLV 181
>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 1023
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 185/641 (28%), Positives = 279/641 (43%), Gaps = 120/641 (18%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ KV AE A+ AKS FL+ +SHEIRTPMN I+G L+ L+ Q +
Sbjct: 257 ELEAAKVAAEGANRAKSAFLSNMSHEIRTPMNAIIGYSHLIRQEPLTPRQTEQ------- 309
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+N + D A+ +L I++D+L L ++ +E F
Sbjct: 310 -------LNRLNDSAQ-------------HLLQIINDILDLSKIEAEKLTLEARDF---- 345
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
+P R + NLV + ++ E + H+ R L+G +
Sbjct: 346 -------EPARVLDHVFNLVADQIQAKELNVLVDLDHVPLR------------LHG---D 383
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM---MASNGGSEDVT 603
GV R G N +S + KF E Q ++ M +A E +
Sbjct: 384 GV-RLGQILLNLIS---------NAVKF-----TERGQIAIAVYPMSVPLAGAADPETLW 428
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTGIG+ R+F F QAD ST+R YGGTG+GL+ISK L ELM G+I S
Sbjct: 429 LRWTVRDTGIGMTAEQLARLFRAFEQADGSTTRRYGGTGLGLAISKRLTELMGGRIGASS 488
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
+P GS F F +E D K EDL +G +A+V+D+ P A+ + L
Sbjct: 489 QPGTGSEFWLEIPFEPAREPAHPD---PKLEDL----RGRRALVIDDHPEARAILIHLLE 541
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
LG+ + + + S D+ L+ D + D + L P
Sbjct: 542 SLGLRAEAVAGGLEGVSAVIEA-----DRRGDPYHLITIDWKMPDMDGLETVRRLQALP- 595
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
V P+L L+ T D + A V+ KP+ S + L L Q
Sbjct: 596 --VRYHPEL-LMVTAYGDQLPDSCREDMGAIQVLAKPVTPSGLHDALAAAL------QGA 646
Query: 844 RGVP------NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
R +P + + H LRG +ILV +DN +N+ V L+ GA V A + + AL+
Sbjct: 647 RDLPVVQDRVDTPADHGERLRGARILVAEDNEINQEVILQLLQATGARVTLAENGREALE 706
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
++ + + +D MD+QMP MDG EATR IR A+ + LPI
Sbjct: 707 QVCA-NAYDLVLMDVQMPVMDGLEATRAIR--------------------ARAEYRELPI 745
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LAMTA+ + +C++ GM+ +++KP E E L LA++
Sbjct: 746 LAMTANAFESDRRQCIEAGMNDHLAKPIEPERLTETLARWL 786
>gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 1230
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 188/637 (29%), Positives = 278/637 (43%), Gaps = 127/637 (19%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE+A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q DY
Sbjct: 710 EAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQADY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
LD+A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LDKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVAFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
L N++K E+G V L ++ +L G
Sbjct: 803 HALD-------------LNALKAQEKG-----VEL----LLYAPVTAGLILEGDP----L 836
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMVC 607
R G N LS +A F + I + + G D +TL
Sbjct: 837 RLGQVLINMLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKFW 877
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI QE +F F QAD ST+R YGGTG+GLSISK LV +M G + S V
Sbjct: 878 VRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGV 937
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTFSFT F +E + K +P LK +VVD+ P + +
Sbjct: 938 GSTFSFTISFEIAEE------AEVKPLIVPEVIGNLKTLVVDDNPTALQIYSTAMRDFHF 991
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA-QLLD-WKPNGH 785
V D +S L E + D++L++ W+ E G + LD +G
Sbjct: 992 DV-------DTASNGAEALYKLEHR-PVDLLLLD---WMMPEMDGVEVIKALDAMVADGR 1040
Query: 786 VFKLPKLILLATNIS---KDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ K P +I++ S K++ D ++ KP +AS + + + K
Sbjct: 1041 LEKRPVIIMMTAYASEPLKEDLDDLDIYA----MLQKPFKASALFDEIIAAFIDKPKINP 1096
Query: 843 GRGVP-NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+P G++ G +IL+V+DN +N+ VA LK G V+ A + + ALD + +
Sbjct: 1097 AAALPVEGNATGTG-----QILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDA 1151
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+DA MDIQMP MDG AT+ +R+ +K LP++AMT
Sbjct: 1152 KQ-YDAVLMDIQMPVMDGLTATKELRKRYTKE--------------------ELPVIAMT 1190
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
A + ++ L GM+ +++KP L+ LA++
Sbjct: 1191 AHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227
>gi|395762839|ref|ZP_10443508.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum PAMC
25724]
Length = 974
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 171/642 (26%), Positives = 285/642 (44%), Gaps = 121/642 (18%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+M + +AEAA AKS+F+A +SHEIRTPMN I+G+ LL ++ L +R Y Q+
Sbjct: 227 EQMVRARDKAEAASTAKSEFVANMSHEIRTPMNAIIGLARLLEESPLERRERSYVGKIQM 286
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
++L+ ++N+VLD +KIEA ++ LE F L +LD + L + + +G+E ++
Sbjct: 287 ATQSLLNIVNDVLDFSKIEAGQMMLEQRRFQLERMLDSIGVLLASSAWARGVEPVFVLAP 346
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
VP+ ++GD R QI+ NLVGN+VKFT +G + + + M+ DA TL +
Sbjct: 347 GVPDELIGDALRVEQILINLVGNAVKFTSQGEVVLAI-----AMLAEDAASATLEFSVRD 401
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
G+ G+ A + +D F ++G S + GG
Sbjct: 402 TGI------------GIGAVEQERIFDAF-----SQGDSSTSR------KYGG------- 431
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
TG+G+ + R + M G LS+ L E
Sbjct: 432 -----TGLGLAIC---RRMVELM-------------GGNLSVKSALGE------------ 458
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GS F F+ F K QSK D L +++D+ A+ ++
Sbjct: 459 --GSDFRFSCRFDKVA-------PQSKPPD-KSAPTALSLLIIDDNASVRAMLEHWCAAQ 508
Query: 726 GIMVKMSSS------IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
G + + S + AS+ +GL + D++L++ + D + L +
Sbjct: 509 GWYSRSADSGAAGLALLHASAGGLDGLPPA------DLVLLDA----AMPDMDGISLLTE 558
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ H+ LP +I+L ++ ++ ++ KP + A L V +
Sbjct: 559 MRAAAHLL-LPPVIMLVAEPDRENLERLADSLMLAGIVSKP---ATPARLLAAVTAVREG 614
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
R A +P + GLL G ++L+V+DN +N+ VA L GA V+ AA+ K A+D L
Sbjct: 615 RSAPSALPVSTPL-SGLLEGMRVLLVEDNEINQEVAQYILLHSGARVDVAANGKLAVDLL 673
Query: 900 QS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
S P +D MD+QMP M+G++AT IR + LPI+
Sbjct: 674 TSTPDAWDVVLMDLQMPVMNGYDATLAIRALGLP---------------------DLPIV 712
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
AMTA+ +H + GM+ +V+KP +++ L + +
Sbjct: 713 AMTANAMHEDRLRAISSGMNAHVAKPINVDDMIETLNRLVPA 754
>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
Length = 1200
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 187/639 (29%), Positives = 281/639 (43%), Gaps = 121/639 (18%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M E K AE+A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q DY
Sbjct: 677 MLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTPQQEDY-------- 728
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
LD+A A+ L LR I++D+L ++ +E F DKV
Sbjct: 729 ----------LDKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVGFPLDKV 769
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+ L N++K ++G V L ++ +L G
Sbjct: 770 LDHALD-------------LNALKAQQKG-----VEL----LLYAPVTAGLILEGDP--- 804
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLM 605
R G N LS +A F + I + + G D +TL
Sbjct: 805 -LRLGQVLINMLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLK 844
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V DTGIGI Q +F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 845 FWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSEM 904
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
VGSTFSFT F +E + K +P LK +VVD+ P + +
Sbjct: 905 GVGSTFSFTISFEIAEE------AEIKPMIVPEKLGNLKTLVVDDNPTALQIYSSVMQDF 958
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPN 783
V ++S +A K G +S D++L++ W+ E G +L +
Sbjct: 959 HFEVDTAASGSEA--IYKLGRSSV------DLLLLD---WMMPEMDGIAVIDELDRMVAD 1007
Query: 784 GHVFKLPKLILLATNISKD-ECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
G + K P +I++ ++ + D K+ FA ++ KP +AS + + + E K
Sbjct: 1008 GRLDKRPIVIMMTAYAAEPLQKDVEKSNIFA--MLQKPFKASALFDEIISAFADEPKLNP 1065
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
+P + ++L+V+DN +N+ VA LK G V+ A + + A+D ++
Sbjct: 1066 VVELPVETVDED----AGRVLLVEDNFINQQVATELLKSAGYEVDVAENGQIAIDMIEEK 1121
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
FDA MDIQMP MDG AT+ +R+ S LPI+AMTA
Sbjct: 1122 E-FDAVLMDIQMPVMDGLTATKELRKRYSST--------------------ELPIIAMTA 1160
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ ++ L GM+ +++KP L+ L+ + K
Sbjct: 1161 HAMSGDREKSLSAGMNAHITKPIVLNELFDTLSHWINHK 1199
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
K LVVDDN + + ++ F V+ AAS A+ KL D +D MPEMDG
Sbjct: 937 KTLVVDDNPTALQIYSSVMQDFHFEVDTAASGSEAIYKL-GRSSVDLLLLDWMMPEMDGI 995
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+ +M DG + + ++ MTA + K +
Sbjct: 996 AVIDELDRM-------------VADGRLDKRPI---VIMMTAYAAEPLQKDVEKSNIFAM 1039
Query: 981 VSKPFEEENLYRELAKFFKSKP 1002
+ KPF+ L+ E+ F +P
Sbjct: 1040 LQKPFKASALFDEIISAFADEP 1061
>gi|262198726|ref|YP_003269935.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
gi|262082073|gb|ACY18042.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
Length = 885
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 178/362 (49%), Gaps = 39/362 (10%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A+AA+ AKS+FLA++SHEIRTP+NGI+GM LLLDT+L QR+ A+T G AL+ LI
Sbjct: 310 ADAANHAKSEFLASMSHEIRTPLNGIIGMSTLLLDTELDDEQRELAKTIDDSGAALLGLI 369
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N +LD +KIE+ KLE E F+L + + + KG+EL + +VP+ V+GD
Sbjct: 370 NNILDFSKIESGKLEFEHRRFDLHECVASACDAVATSAAAKGLELICDIKPQVPQVVIGD 429
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
GR RQ++ NL+GN+VKFT G + V++ LA L G G
Sbjct: 430 AGRVRQLVLNLLGNAVKFTASGEVLVRLSLAPARASSIPGDGGRLAGDGARAG------- 482
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
+D R+ H G L + V DTG+G
Sbjct: 483 --------SESDVRSDLGSGVH-----------------RDPGAGALCRLRLSVRDTGLG 517
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR--PQVGSTFS 672
I R+F F Q DSST+R YGG+G+GL+IS+ L LM G IS S P GSTF
Sbjct: 518 IHPDDISRLFRSFRQLDSSTARKYGGSGLGLAISRRLARLMDGDISVESAGVPGRGSTFQ 577
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
C V ED +L P + + V + + + V HL G V+ S
Sbjct: 578 VEL----CVRRVIEDSGVQSPPELQPLAEMRVRLAVAHRTL-STVLGEHLIHAGAQVQTS 632
Query: 733 SS 734
+S
Sbjct: 633 AS 634
>gi|302121697|gb|ADK92863.1| histidine kinase 2 [Hypericum perforatum]
Length = 185
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 119/156 (76%), Gaps = 2/156 (1%)
Query: 290 MYGDQNQDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGY 349
MYG D D L+H S LDFGD R+H+M CR+ QKAS PWTA+ + +F+I +LVG+
Sbjct: 1 MYGCDVIDTD--LIHLSNLDFGDPSRRHEMRCRFKQKASLPWTAINASTTVFIITVLVGH 58
Query: 350 ILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
I + A IVKVE D HKM EL VRA+AA+VAKS+FLATVSHEIRT MNG+LGML +L+D
Sbjct: 59 IFHAAIKRIVKVEADCHKMLELTVRAKAANVAKSKFLATVSHEIRTSMNGVLGMLQMLMD 118
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
T+L ++Q DYA+TA G+ LI+L+N+VLD+AKI+
Sbjct: 119 TELDTSQEDYAKTAHASGRELISLMNDVLDQAKIKC 154
>gi|423109998|ref|ZP_17097693.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5243]
gi|423115959|ref|ZP_17103650.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5245]
gi|376379371|gb|EHS92124.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5245]
gi|376380540|gb|EHS93285.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5243]
Length = 917
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 177/635 (27%), Positives = 281/635 (44%), Gaps = 143/635 (22%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNL+GN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDVLVE--QRAISNSRVQIEVQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ ++ + LV+ M G ISF S+P GSTF
Sbjct: 483 GLGLVITQR------------------------------LVKEMGGDISFHSQPNRGSTF 512
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F ++ D+ + D P G K ++ A T L + V
Sbjct: 513 WF---------HISLDLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV 563
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL 789
S + +T+ D DI+L +G + D N H KL
Sbjct: 564 VYSPT-----------MTALPDAHY-DILL-----------AGIPVSIRDL--NQHRDKL 598
Query: 790 PKLILLATNI-------SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ LA ++ ++ + K G A ++KPL ++ + L T Q
Sbjct: 599 ARARKLADHLLLALPCHAQVSAETLKHDGIA-ACLLKPLTSTRLLPALTATCQT----QP 653
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
+P S + ++ VDDN N + L+ V S + A+++ +
Sbjct: 654 TLLLPRSGSTKLPM----TVMAVDDNPANLKLIGALLEDLVQHVILCDSGQNAVERAREM 709
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
D MDIQMPEMDG A I Q+ + P++A+TA
Sbjct: 710 QQ-DLILMDIQMPEMDGIRACELIHQLPHQQQT--------------------PVIAVTA 748
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ ++ L GM+ Y++KP EE+ LY L ++
Sbjct: 749 HALEGQREKLLSAGMNDYLAKPIEEDKLYNLLLRY 783
>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica
KT99]
gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica
KT99]
Length = 1235
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 190/640 (29%), Positives = 276/640 (43%), Gaps = 126/640 (19%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE+A+V KS+FLA +SHEIRTPMN I+GML L T+L+ QR
Sbjct: 710 EAKQDAESANVYKSEFLANMSHEIRTPMNAIIGMLQLAERTELTPKQR------------ 757
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
+ L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 758 ------DYLEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVAFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
L N++K ++G V L ++ +L G
Sbjct: 803 HALD-------------LNALKSQQKG-----VEL----LLYAPVTAGLILEGDP----L 836
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMVC 607
R G N LS +A F I + + G D +TL
Sbjct: 837 RLGQVLINMLS------------------NAVKFTQTGEI-ELGCEDVGERDHRITLKFW 877
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI Q +F F QAD ST+R YGGTG+GLSISK LV +M GQ+ S V
Sbjct: 878 VRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGQMQVQSEMGV 937
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTFSFT F +E + K +P LKA+VVD+ P + +
Sbjct: 938 GSTFSFTISFEIAEE------AEMKPMIVPERLGHLKALVVDDNPTALQIYSTVMRDFHF 991
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPNGH 785
V D ++ L E K D++L++ W+ E G +L +G
Sbjct: 992 EV-------DTAANGSEALYKLE-KSSVDLLLLD---WMMPEMDGIQVIDELDRMVADGR 1040
Query: 786 VFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ K P +I++ A K++ D++ ++ KP +AS A +++ +
Sbjct: 1041 LDKRPIVIMMTAYAAEPLKEDVDRSNIYA----MLQKPFKAS---ALFNEIIGAFAEEPK 1093
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
V +L+V+DN +N+ VA LK G V+ A + + A+D L +
Sbjct: 1094 VSSVIQVEVEEVVDTHAGVVLLVEDNVINQQVATELLKSAGYEVDVADNGQIAIDML-AE 1152
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH-LPILAMT 961
FDA MDIQMP MDG ATR IR K LH LPI+AMT
Sbjct: 1153 KDFDAVLMDIQMPVMDGLTATREIR---------------------KHFSLHELPIIAMT 1191
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
A + ++ L GM+ +++KP L+ L+ + K K
Sbjct: 1192 AHAMSGDREKSLSAGMNAHITKPIVLSELFDTLSFWIKKK 1231
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
K LVVDDN + + ++ F V+ AA+ AL KL+ D +D MPEMDG
Sbjct: 968 KALVVDDNPTALQIYSTVMRDFHFEVDTAANGSEALYKLEK-SSVDLLLLDWMMPEMDGI 1026
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+ + +M DG + + ++ MTA ++ + +
Sbjct: 1027 QVIDELDRM-------------VADGRLDKRPI---VIMMTAYAAEPLKEDVDRSNIYAM 1070
Query: 981 VSKPFEEENLYRELAKFFKSKP 1002
+ KPF+ L+ E+ F +P
Sbjct: 1071 LQKPFKASALFNEIIGAFAEEP 1092
>gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
Length = 972
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 176/638 (27%), Positives = 277/638 (43%), Gaps = 123/638 (19%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++ V+AEAA AKS FLA +SHEIRTPMN I+G+ L+ QR+ +
Sbjct: 451 QLEQRAVQAEAATRAKSAFLANMSHEIRTPMNAIIGLTHLISRATQDPLQRERLRKVDGA 510
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L+ ++N++LD +KIEA KL L+ V F+ ++ L + +R KG+EL V +D
Sbjct: 511 AAHLLQILNDILDLSKIEAGKLRLDPVDFSRDELIARALDVVEASARAKGLEL-VLDTDH 569
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKDETLLNG 542
+P + GD Q + NL+GN+VKFTE G + ++ L +R V+ + +D
Sbjct: 570 LPARLRGDARLLSQALINLLGNAVKFTEHGWVRLRAALLREHGQRLQVRFEVQD------ 623
Query: 543 GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
G+ + Q + E AD ++ +GG
Sbjct: 624 ---TGIGIAPEQQARLFTAFEQADSSST-----------------------RRHGG---- 653
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TG+G+ L +RH + ELM G V
Sbjct: 654 --------TGLGLAL-----------------TRH-------------IAELMGGSADAV 675
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
SRP GSTF T + + E S LPP L+A+VVD+ P L
Sbjct: 676 SRPGAGSTFGLTVWLERAESVPPE------SGSLPP---SLRALVVDDLPEAREAIASQL 726
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
LG+ + D + A L ++ + + D+ +V DC + D GF + L
Sbjct: 727 ELLGV----QADTADGAEQALARLAAAGQR-RYDLFIV--DCVMPVCD-GF--ETLRRLR 776
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
P +L++ + + ++A+ G+ V+MKPL S + + Q+L + + +A
Sbjct: 777 AAPGGAGPAAVLVSAHDAPALRERARDAGYG-AVLMKPLTPSALHDTIAQLLRSSPRTEA 835
Query: 843 GRGVPNGSSFHQGLLR--GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+F + R G+++L+ +DN VN+ VA L+ G V A A++
Sbjct: 836 AADASE-PAFVRLCARAAGRRVLLAEDNPVNQEVAVALLESAGLEVVVADDGARAVELAC 894
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
FD MD+QMP MDG ATR IR+ + LPI+AM
Sbjct: 895 GSPPFDLVLMDVQMPGMDGLTATRTIRERAGRT---------------------LPIVAM 933
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
TA+ + CL GMD +V+KP + LY L ++
Sbjct: 934 TANAFGEDREACLAAGMDDHVAKPVDPAMLYTTLLRWL 971
>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|418022350|ref|ZP_12661337.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|353538575|gb|EHC08130.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1238
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 195/645 (30%), Positives = 283/645 (43%), Gaps = 135/645 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI Q+++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
VGSTFSFT FE + +K E L P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTI--------SFEIAEAAKIEPLVVPEKLNSLRTLVVDDNPTALQIYS----- 983
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN--AQLLDWKP 782
+M + A+S A+ S D++L++ W+ E G + + +
Sbjct: 984 -TLMRDFHFEVDTAASGAEALYKLSRAPI--DLLLLD---WMMPEMDGSDVVSAIDTMVA 1037
Query: 783 NGHVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-- 837
G + K P +I++ A + E D A FA V+ KP +AS + + + E
Sbjct: 1038 EGRLAKRPVIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPR 1093
Query: 838 -NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
N Q V H GL +L+V+DN +N+ VA LK G V A + + AL
Sbjct: 1094 LNVVQPMVEVQVEDGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVAL 1148
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
D + S FDA MDIQMP MDG A R +R+ S A+E LP
Sbjct: 1149 DTIDS-RPFDAVLMDIQMPVMDGLTAARALRERFS-ADE-------------------LP 1187
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA + ++ L GM+ +++KP L+ L + K K
Sbjct: 1188 IIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHK 1232
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNSLRTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKL-SRAPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGSDVVSAIDTMVAEGR------------LAKRP----VIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|373948030|ref|ZP_09607991.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
gi|386326124|ref|YP_006022241.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|333820269|gb|AEG12935.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|373884630|gb|EHQ13522.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
Length = 1238
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 193/645 (29%), Positives = 281/645 (43%), Gaps = 135/645 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI Q+++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
VGSTFSFT FE + +K E L P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTI--------SFEIAEAAKIEPLVVPEKLNSLRTLVVDDNPTALQIYS----- 983
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN--AQLLDWKP 782
+M + A+S A+ S D++L++ W+ E G + + +
Sbjct: 984 -TLMRDFHFEVDTAASGAEALYKLSRAPI--DLLLLD---WMMPEMDGSDVVSAIDTMVA 1037
Query: 783 NGHVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-- 837
G + K P +I++ A + E D A FA V+ KP +AS + + + E
Sbjct: 1038 EGRLAKRPVIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPR 1093
Query: 838 -NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
N Q V H GL +L+V+DN +N+ VA LK G V A + + AL
Sbjct: 1094 LNVVQPMVEVQVEDGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVAL 1148
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
D + S FDA MDIQMP MDG A R +R+ S + LP
Sbjct: 1149 DTIDS-RPFDAVLMDIQMPVMDGLTAARALRERFSADD--------------------LP 1187
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA + ++ L GM+ +++KP L+ L + K K
Sbjct: 1188 IIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHK 1232
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNSLRTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKL-SRAPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGSDVVSAIDTMVAEGR------------LAKRP----VIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|386339558|ref|YP_006035924.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|334861959|gb|AEH12430.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
Length = 1238
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 193/645 (29%), Positives = 281/645 (43%), Gaps = 135/645 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI Q+++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
VGSTFSFT FE + +K E L P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTI--------SFEIAEAAKIEPLVVPEKLNSLRTLVVDDNPTALQIYS----- 983
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN--AQLLDWKP 782
+M + A+S A+ S D++L++ W+ E G + + +
Sbjct: 984 -TLMRDFHFEVDTAASGAEALYKLSRAPI--DLLLLD---WMIPEMDGSDVVSAIDTMVA 1037
Query: 783 NGHVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-- 837
G + K P +I++ A + E D A FA V+ KP +AS + + + E
Sbjct: 1038 EGRLAKRPVIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPR 1093
Query: 838 -NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
N Q V H GL +L+V+DN +N+ VA LK G V A + + AL
Sbjct: 1094 LNVVQPMVEVQVEDGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVAL 1148
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
D + S FDA MDIQMP MDG A R +R+ S + LP
Sbjct: 1149 DTIDS-RPFDAVLMDIQMPVMDGLTAARALRERFSADD--------------------LP 1187
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA + ++ L GM+ +++KP L+ L + K K
Sbjct: 1188 IIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHK 1232
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D +PE
Sbjct: 964 LNSLRTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKL-SRAPIDLLLLDWMIPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGSDVVSAIDTMVAEGR------------LAKRP----VIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
Length = 1238
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 192/643 (29%), Positives = 280/643 (43%), Gaps = 131/643 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L++ Q+DY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LEKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVPFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
L N++K E+G + + + ++K D
Sbjct: 803 HALD-------------LNALKAQEQGVELLLYAPVTAGLILKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F + I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI Q+++F F QAD ST+R YGGTG+GLSISK LV +M G++ S
Sbjct: 877 WVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
VGSTFSFT F + E +P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTISFEIAEAAKIEPFV------VPEKLNSLRTLVVDDNPTALQIYS------T 984
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN--AQLLDWKPNG 784
+M + A+S A+ S D++L++ W+ E G + + + G
Sbjct: 985 LMRDFHFEVDTAASGAEALYKLSRAPI--DLLLLD---WMMPEMDGSDVVSAIDTMVAEG 1039
Query: 785 HVFKLPKLILL---ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---N 838
+ K P +I++ A + E D A FA V+ KP +AS + + + E N
Sbjct: 1040 RLAKRPVIIMMTAYAAEPLQHEVDSANV--FA--VLQKPFKASSLFDEIIAAFADEPRLN 1095
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
Q V H GL +L+V+DN +N+ VA LK G V A + + ALD
Sbjct: 1096 VVQPMVEVQVEDGEHTGL-----VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDT 1150
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ S FDA MDIQMP MDG A R +R+ S A+E LPI+
Sbjct: 1151 IDS-RPFDAVLMDIQMPVMDGLTAARALRERFS-ADE-------------------LPII 1189
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
AMTA + ++ L GM+ +++KP L+ L + K K
Sbjct: 1190 AMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIKHK 1232
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L + LVVDDN + + ++ F V+ AAS AL KL S D +D MPE
Sbjct: 964 LNSLRTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKL-SRAPIDLLLLDWMMPE 1022
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + I M ++ AKR I+ MTA E
Sbjct: 1023 MDGSDVVSAIDTMVAEGR------------LAKRP----VIIMMTAYAAEPLQHEVDSAN 1066
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + KPF+ +L+ E+ F +P
Sbjct: 1067 VFAVLQKPFKASSLFDEIIAAFADEP 1092
>gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3]
Length = 1572
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 174/643 (27%), Positives = 275/643 (42%), Gaps = 140/643 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A+ A+ AK +FLA +SHEI TPMN I+GM L L T+L+ Q Y + + ++L+ +I
Sbjct: 834 ADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKTELTKQQHSYIEKSHRSAQSLLGII 893
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++E + F L +L+D+++ K K +EL + +P + GD
Sbjct: 894 NDILDFSKIEAGKLDIETIQFRLEDVLEDIINFVGIKVAEKELELLFDIDPTIPAILQGD 953
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE-TLLNGGTEEGVCRSGT 553
P R QI+TNL N+VKFTE G + + V + + T DE TL T+ G+ +
Sbjct: 954 PLRLAQILTNLANNAVKFTEHGSVIIGVSIEKLT------DDEVTLKFSVTDTGIGMTAE 1007
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
Q AD + GG TG+
Sbjct: 1008 QQQGLFKAFSQADASTT-----------------------RKYGG------------TGL 1032
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ + M G IG+S E+ +G I F F
Sbjct: 1033 GLAICKNLADLM--------------GGEIGVS-----SEVNKGSI-----------FYF 1062
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
+VF + + DL P ++G + VR + + + N I++ M +
Sbjct: 1063 ESVFPIVEHH-----------DLAPIYQG------SLEDVRVLLVEDNANSREILLAMLA 1105
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PN-------GH 785
S+ A++G+ + + +++ + E S + LLDWK P
Sbjct: 1106 SLNVQVECAEDGVEA--------VAMLK-----ASEASPYQLALLDWKMPKLDGIGVAKF 1152
Query: 786 VFKLPKLI----LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
+ +LP+ I ++ T K+E D V+ KP+ S + L L ++
Sbjct: 1153 IKQLPESITPHVVMVTAYGKEELLLDAVDVPIDAVLTKPVTQSTLWDALLPALGFAPRKL 1212
Query: 842 AG---RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
R ++ Q L G K+LV +DN +N+ + L G T A + + LD
Sbjct: 1213 TSFSKRRSRVEAALSQ--LAGAKLLVAEDNDLNQELIVELLSSNGITPVLANNGQEVLDF 1270
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L+ FD MD QMP MDG+ ATRRIR NEQ HLP+L
Sbjct: 1271 LEQEQ-FDGVLMDCQMPIMDGYTATRRIRD-----NEQFE---------------HLPVL 1309
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
AMT + + + L+ GM+ ++ KP + L+ +AK+ K
Sbjct: 1310 AMTENAMAGDRERALESGMNDHIPKPINVDELFTTIAKWVTPK 1352
>gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
Length = 1681
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 182/628 (28%), Positives = 265/628 (42%), Gaps = 132/628 (21%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS FLA +SHEIRTPMN ILGM L+L T+LSS QRDY +L+
Sbjct: 961 AKSDFLANMSHEIRTPMNAILGMSYLVLQTELSSKQRDYVGKVHQAAGSLLG-------- 1012
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
IL+D+L ++ IE VF D V
Sbjct: 1013 -------------------ILNDILDFSKIEAEKMDIECTVFDLDDV------------- 1040
Query: 501 IITNLVGN-SVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTL 559
++NL S K E+ F+ D E L +G+ R G N
Sbjct: 1041 -LSNLANVVSYKVEEKNMAFI-----------FDLPPE-LPRYYHGDGL-RLGQILINYC 1086
Query: 560 SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
N+ KF H +++S++ + E V L CVED GIGIP
Sbjct: 1087 ---------NNAVKFSH--------NDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPDQK 1129
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
Q +F F Q D+STSR YGGTG+GL+I K L LM G++ S VGS F
Sbjct: 1130 QGVLFGSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRLTLNC 1189
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
Y +S+ L G A +V P + H G+ KM ++ + +
Sbjct: 1190 ADTY--------ESQSLFDALAGETAKLVGLHPRLEKLLTEH----GLAAKMQVAVAETN 1237
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD---WKPNGHVFKLPKLILLA 796
S + L S + ++L + S F+ +LLD P+ +LL
Sbjct: 1238 SVIEE-LKHSRTR---QLVLCDY--------SAFSPELLDALTANPDSR-------MLLV 1278
Query: 797 TNISKDECDKAKAGGFADTVIM-KPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH-- 853
N+S + + + KPL I L +L N+ GR + S H
Sbjct: 1279 GNLSDQDALRPLIENNPRVLSQTKPLTPIAIGNALLSLLGHNNEN--GRQMQQDHSLHAL 1336
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
+ L G ++L+V+DN +N+ +A L + G V A A+D+++ + FD MD Q
Sbjct: 1337 KTQLAGAEVLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIDRIEQQY-FDCVLMDCQ 1395
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MP +DG+EATRRIR++ AN LPILAMTA+ + ++ L
Sbjct: 1396 MPVLDGYEATRRIRELPQFAN--------------------LPILAMTANAMSGDIEKAL 1435
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSK 1001
GM+ ++KP ++LY +A++ K
Sbjct: 1436 AVGMNDQITKPVHVKDLYTVMARWITPK 1463
>gi|392424053|ref|YP_006465047.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
gi|391354016|gb|AFM39715.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
Length = 1367
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/399 (33%), Positives = 200/399 (50%), Gaps = 54/399 (13%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
T+ V DTGIGIP +R+F PF QAD+ST+R YGGTG+GL+I+K LV +M+G I
Sbjct: 1009 TIRFEVRDTGIGIPKEDTKRIFRPFDQADASTTRKYGGTGLGLAITKELVTIMKGTIGVD 1068
Query: 663 SRPQVGSTFSFTAVF------GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
S P GSTF FTA F C +YV + +VD+
Sbjct: 1069 SVPGQGSTFYFTAKFKILNKKAVCDKYV--------------SLNNVNVFIVDDNDNNRR 1114
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-A 775
+ + +L G V + S A ST N S +K Q ++LV D + G + GF+ A
Sbjct: 1115 IVRSYLEDAGCKVMEAKSSDKALSTILNNAYSENNKIQ--LVLV--DYHMPGIN-GFDLA 1169
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
L+ P K +LILL ++ + +A+ GF+ + KP+R + C+ VL
Sbjct: 1170 TALNMIP---ATKDLRLILLTSSAQMGDAGRARELGFS-GYLTKPVRRDELLNCMSIVLG 1225
Query: 836 TENKRQAGRGVPNGSSF--HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
E + R + + +Q +L+ K+L+V+DN VNR V LK G T + A +
Sbjct: 1226 LERDPENSREIVTKYTHNENQSVLK-PKLLLVEDNEVNRKVVLATLKSRGMTCDVAMDGQ 1284
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A + + +D FMD QMP MDG+EAT++IR+ E GS
Sbjct: 1285 EAYEVMLKKD-YDLVFMDCQMPVMDGYEATKKIREAE----------GSK---------- 1323
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
H I+AMTA+ + ++CL+ GMD Y+SKP + E +++
Sbjct: 1324 HTKIIAMTANAMMGDKEKCLEAGMDDYISKPIDFEEMFK 1362
Score = 150 bits (378), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 106/160 (66%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q K AEAA+ AKSQFLA +SHEIRTPMNGI G L LL + LS QR+Y + +
Sbjct: 843 ELQASKRAAEAANQAKSQFLANMSHEIRTPMNGIFGFLELLNHSQLSQVQREYIREVKSS 902
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+ L+ LIN++LD +KIE+ KL LE + FNLR ++D +SLF + K +EL +
Sbjct: 903 SETLLHLINDILDLSKIESGKLTLENLNFNLRTTIEDAMSLFVPTAYEKHLELYTQIKAN 962
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
VP+ V GDP R +QI++NL+ N++KFTE G + + V E
Sbjct: 963 VPDEVSGDPSRLKQILSNLISNALKFTENGEVSIVVETVE 1002
>gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
Length = 1236
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 180/645 (27%), Positives = 276/645 (42%), Gaps = 138/645 (21%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q+DY A ++
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLTEQQKDYLDKASFSAQS 769
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ +IN D+L ++ +E F DKV
Sbjct: 770 LLRIIN---------------------------DILDFSKIEAGKLELEKVAFPLDKV-- 800
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548
+ +L N+++ E+G + + ++ M+K D
Sbjct: 801 -----------LDHSLDLNALRAQEKGIELLLYAPVSAGIMLKGDP-------------- 835
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLMV 606
R G N LS +A F N I + + G D +TL
Sbjct: 836 LRLGQVLINLLS------------------NAVKFTQNGEI-ELGCEDVGERDHRITLKF 876
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI Q+++F F QAD ST+R YGGTG+GLSISK LV +M G + S P
Sbjct: 877 WVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPG 936
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
VGSTFSFT F +E + +P L+ +VVD+ P +
Sbjct: 937 VGSTFSFTVSFEIAEE------AKVVPMVVPERLASLRTLVVDDNPTALQI--------- 981
Query: 727 IMVKMSSSIKDASSTAKNGLTSSED-----KFQPDIILVEKDCWISGEDSGFNAQLLD-- 779
SS ++D + T +E K Q D++L++ W+ E G Q++D
Sbjct: 982 ----YSSVMRDFHFEVETASTGAEALYKLCKQQVDLVLLD---WMMPEMDGI--QVIDAI 1032
Query: 780 --WKPNGHVFKLPKLILLATNISKD-ECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
G + P +I++ ++ + D FA ++ KP +AS + + + +
Sbjct: 1033 DEMVAEGKLAARPVIIIMTAYAAEPLKVDLDSDRVFA--MLQKPFKASSLFDEIIRAFAP 1090
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+ HQG+ +L+V+DN +N+ VA LK G V+ A + + +L
Sbjct: 1091 PAPKALPAPPVEDEGEHQGV-----VLLVEDNFINQQVATELLKSAGYEVDVADNGQISL 1145
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ + +DA MDIQMP MDG A +R+ S DE LP
Sbjct: 1146 E-MVGKRSYDAILMDIQMPVMDGLTAATELRKRYS------------------FDE--LP 1184
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA + ++ L GM+ +++KP L+ L+ + K
Sbjct: 1185 IIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLSHWIGHK 1229
>gi|392411875|ref|YP_006448482.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390625011|gb|AFM26218.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1269
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/412 (33%), Positives = 204/412 (49%), Gaps = 42/412 (10%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D L V DTGIG+ R+F F QAD+S +R +GGTG+GL+ISK LVE+M GQIS
Sbjct: 671 DCVLKFSVTDTGIGMTPDQMTRLFAAFSQADTSVTRKFGGTGLGLTISKHLVEMMGGQIS 730
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQ 719
S GSTFSF+ FG+ ++ + + +PP +GLK +VVD+ P V
Sbjct: 731 VESELGRGSTFSFSIEFGRAS-------REKRRQLVPPQSVEGLKVLVVDDNPTAREVLV 783
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L+ L V + S + A S K SS D+++++ W E G A +
Sbjct: 784 EQLDSLKFRVMSAPSARAAISELKR---SSAQDAPYDLVVMD---WKMPEMDGIEASRV- 836
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ + + P +I++ +D +A+ G + +MKP+ S++ + QV E
Sbjct: 837 IRNDADLQHAPSIIMVTAFGREDVMTRAEEVGI-NGFLMKPVTPSLMFDTIMQVFGHEPS 895
Query: 840 R---QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
Q P L+ G K+L+V+DN +N+ VA L G VE A + K A+
Sbjct: 896 TGTIQRRAAAPAVEPDFADLIEGAKVLLVEDNALNQQVANEILAGAGLFVEIANNGKEAV 955
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ +++ +D MD+QMP M G+EAT IR+ N + + LP
Sbjct: 956 EAVETSE-YDLVLMDVQMPVMGGYEATAVIRK-----NPRFKD---------------LP 994
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK--PLSGA 1006
I+AMTA + +ECL GM+ YVSKP + L+ L ++ K K PLS A
Sbjct: 995 IVAMTAHAMRGAKEECLNAGMNDYVSKPIDPAQLFSVLVRWIKPKDRPLSSA 1046
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 105/155 (67%)
Query: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
++L+ +AE A +AKS+FLA +SHEIRTPMN I+G L L TDL+S QRDY K
Sbjct: 509 KQLRTQAEFATLAKSEFLAKMSHEIRTPMNAIIGFAGLALKTDLTSKQRDYLSKIDSSAK 568
Query: 429 ALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVP 488
L+ +IN++LD +KIEA KL+LE++ F L +++ + ++ S K+ K +EL + VP
Sbjct: 569 TLLGIINDILDFSKIEAGKLDLESIDFQLDEVINGIANMVSVKASEKDLELISQIGSNVP 628
Query: 489 EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
++GDP R Q++ NLV N+VKFTE GHI +KV
Sbjct: 629 AALIGDPLRLGQVLVNLVNNAVKFTEHGHILIKVE 663
>gi|381159961|ref|ZP_09869193.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380878025|gb|EIC20117.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 958
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 194/402 (48%), Gaps = 66/402 (16%)
Query: 341 FVIGLLVGYILYGAAIHIVKVEDDFHK----MQELKVRAEAADVAKSQFLATVSHEIRTP 396
F +GL + L G AI + + + + +L +AE+A+ AKS+FLA V+HEIRTP
Sbjct: 340 FSLGLAIAS-LCGLAIANARTYAELQRTIAQVTQLAEQAESANRAKSEFLANVTHEIRTP 398
Query: 397 MNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFN 456
+NG++GM LLL++ L Q +T + CG AL+AL+N+ LD AK+EA L LE + F
Sbjct: 399 LNGVIGMTDLLLESALEREQCQRVETIRDCGTALLALVNDFLDFAKVEAGALRLETLPFA 458
Query: 457 LRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
L +L L++ ++R +G++L + +VP + GDPGR RQ++ NL+GN++KF
Sbjct: 459 LDELLHSALAILEPRARAQGLKLHQEIDIRVPLHLRGDPGRLRQVLINLLGNAIKF---- 514
Query: 517 HIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
TE+G R G G A G+ +
Sbjct: 515 ---------------------------TEQGEVRVTIGLAAEAPG-SAQPGQPEQAEQTE 546
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
+ G + V L V V DTGIGIP +F F Q D+ST+R
Sbjct: 547 RPEEPG-----------------QPVRLRVAVSDTGIGIPEDKLGTLFAKFSQVDTSTTR 589
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF--------GKCKEYVFEDI 688
+GGTG+GL+I K L ELM G++ S GSTF FTA + K I
Sbjct: 590 RFGGTGLGLAIVKQLAELMGGEVGVSSCLGEGSTFWFTAKLEVAAAPLEPRAKSVALAPI 649
Query: 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
+ + D P + ++ ++ V + + L RLG V+
Sbjct: 650 ALASARDQQPA----RVLLAEDNRVNQQIAEAQLARLGFEVR 687
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++L+ +DN VN+ +A L + G V AL L+ CFD MD+QMP MDGF
Sbjct: 661 RVLLAEDNRVNQQIAEAQLARLGFEVRTVGDGFEALAALRE-QCFDLVLMDVQMPRMDGF 719
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
AT RIR ++ DG +PI+AMTA +H + CL GM+ Y
Sbjct: 720 AATARIR--------------TARDGVRTPT---VPIIAMTAHAMHGYRERCLAAGMNDY 762
Query: 981 VSKPFEEENLYRELAKFF 998
+ KP + +L L ++
Sbjct: 763 LVKPLQPADLAEVLGRWL 780
>gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 2654
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 186/670 (27%), Positives = 292/670 (43%), Gaps = 138/670 (20%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+YG + I + +Q+ K A+AA+ AKS FLA +SHEIRTPMN I+GM L L T
Sbjct: 1810 MYGITMDITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQT 1869
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
DL+ Q R I K EA+L I++D+L
Sbjct: 1870 DLNGRQ-----------------------RNYITKVKRSAEALL----GIINDILDF--- 1899
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
S+ + +L + D E VL + ++NLVG +K E+G +++H + +
Sbjct: 1900 -SKIEAGKLTMEFIDFRLEDVLDN-------LSNLVG--LKAEEKG---LELHFSLPPGL 1946
Query: 531 KTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASII 590
T K + L R G N G N+ KF D ++
Sbjct: 1947 HTALKGDPL----------RLGQVLINL--------GNNA-VKFTAHGDV--------VV 1979
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
+ +E + L V+D+GIG+ + +F F QAD+ST+R +GGTG+GL+ISK
Sbjct: 1980 KVQQLERTTERIKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKR 2039
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
LVE+M G+I S P+ GS F F+A FG +++ ++ + L +VVD+
Sbjct: 2040 LVEMMEGEIDVDSVPEQGSDFHFSAWFG------LGEVRGEETLRVERDLANLHLLVVDD 2093
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
I+ +M+ S TA++G + + +
Sbjct: 2094 NSTARE----------ILAEMAQSFGFRVDTAESGAAALAKVEAAAAL-----------N 2132
Query: 771 SGFNAQLLDWK--------------PNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
L+DWK N + +LP ++++ T ++E +A G
Sbjct: 2133 DPVQVVLMDWKMPDMDGLQTARAMQHNDDLQELP-MVIMVTAYGREEAVQAATGVELKGF 2191
Query: 817 IMKPLRASMIAACLQQVLSTE---NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRM 873
+ KP+ S + + L E +R R V + LLRG K+L+V+DN +N+
Sbjct: 2192 LTKPVSPSTLLDAVMGALGREGVSGRRAHERQVEESEAII--LLRGAKVLLVEDNEINQE 2249
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
+A L G + A + AL LQ FD MD+QMP MDG+ ATR IR+
Sbjct: 2250 LALELLANAGILAKLAENGVEALQALQR-EPFDGVLMDVQMPIMDGYTATREIRKQ---- 2304
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
A +D LP++AMTA+V+ A ++ GM +VSKP + ++
Sbjct: 2305 -------------AAFKD---LPVIAMTANVMAADLEKAKAAGMQAHVSKPIDVREMFTT 2348
Query: 994 LAKFFKSKPL 1003
+A++ K L
Sbjct: 2349 MAQWIKPSGL 2358
>gi|189347557|ref|YP_001944086.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
gi|189341704|gb|ACD91107.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
Length = 990
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 183/636 (28%), Positives = 273/636 (42%), Gaps = 112/636 (17%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
+K+ + K +E+ A A+ AKS+FLA +SHEIRTPMNG++GM +LLDT L QR
Sbjct: 315 MKLGESVRKTEEMAKSAREANEAKSRFLANMSHEIRTPMNGVIGMSDILLDTSLDIEQRK 374
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
Y +T GK L+ +IN++LD +KIEA +LEL+ + FNL +L+DV +L ++ K +E
Sbjct: 375 YVETIISSGKNLLKIINDILDFSKIEANRLELDHIDFNLIDLLEDVGTLLGFEAYEKELE 434
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
L +P + GDP R RQI+ NLV N++KFT G + + L T E
Sbjct: 435 LVFRTGPTLPLRLKGDPARLRQILVNLVSNAIKFTHEGEVVLDAVLERET-------SEQ 487
Query: 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598
++ G T V +G G G F+ + A+G + GG
Sbjct: 488 VVIGFT---VSDTGIGIEEERKG----------SIFEPFVQADG--------TTIRKYGG 526
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
TG+G+ +S+ L E M
Sbjct: 527 ------------TGLGLSISSH------------------------------LAEKMGSG 544
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I+ SR GS F F A F K +S LP GL +V +
Sbjct: 545 ITVQSRIGTGSVFRFDAAFEKTAP------GESAETFLPRIPPGLDVLVFSGNGSMRVMF 598
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
Q + + S+ +A +N +F D++L++ S D+ +L
Sbjct: 599 QELFDSMQCSCNCPDSVHEAVRLIENR------RF--DVMLLDVPVRRSNPDAL--KELF 648
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR----ASMIAACLQQVL 834
N +L ++L++ + D K +A FA +++KPL + AA + Q
Sbjct: 649 AAAENSS--RLRVIVLVSAGQADDIRKKHRAWIFA--LLVKPLHLGELLQVTAAVVAQGS 704
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ R G + Q L +IL+V+D+ VN+ VA L K G + A
Sbjct: 705 RPPDSRTQGTKGTVVTPQLQSLNPDYRILLVEDSRVNQQVAICMLLKLGYHADLAEDGCE 764
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
AL L S +D MD QMP MDG+E IR A RD
Sbjct: 765 ALLML-SEKRYDLVLMDCQMPRMDGYETAFHIRNKPELA--------------VNRD--- 806
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+ I+AMTA I + CL GMD Y++KP ++ +L
Sbjct: 807 VVIVAMTAHAIQGDKERCLAAGMDDYLAKPVQKSDL 842
>gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 1234
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 185/641 (28%), Positives = 278/641 (43%), Gaps = 131/641 (20%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q+DY
Sbjct: 708 MLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTPQQKDY-------- 759
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L++A A L LR I++D+L ++ +E F DKV
Sbjct: 760 ----------LEKAGFSAHSL--------LR-IINDILDFSKIEAGKLELERVAFPLDKV 800
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+ L N++K E+G V L ++ +L G
Sbjct: 801 LDHALD-------------LNALKAQEKG-----VEL----LLYAPVTAGLILEGDP--- 835
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED--VTLM 605
R G N LS +A F + I + + G D +TL
Sbjct: 836 -LRLGQVLINLLS------------------NAVKFTQSGEI-ELGCEDVGERDHRITLK 875
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ DTGIGI Q +F F QAD ST+R YGGTG+GLSISK LV LM G + S
Sbjct: 876 FWIRDTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVESEM 935
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV-----RAAVTQY 720
VGSTFSFT F +E + +P LK +V+D+ P + + +
Sbjct: 936 SVGSTFSFTISFEIAEE------GEVLPLVVPETLGNLKTLVIDDNPTALQIYSSVMRDF 989
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLL 778
H N D +++ GL K D++L++ W+ E G Q+
Sbjct: 990 HFN------------VDTAASGPEGLYKL-SKNPVDLLLLD---WMMPEMDGVEVIKQID 1033
Query: 779 DWKPNGHVFKLPKLILLATNISKD-ECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+G + K P +I++ ++ + D A FA ++ KP +AS + +++S
Sbjct: 1034 QMVADGRLEKRPIIIMMTAYTAEPMQKDVEAANVFA--LLQKPFKAS---SLFDEIISAF 1088
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+ +P + + +L+V+DN +N+ VA LK G TV+ A + + ALD
Sbjct: 1089 ADEPSLNPLPEANE-EEADQDAGYVLLVEDNFINQQVATELLKSAGYTVDVAENGQIALD 1147
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L +DA MDIQMP MDG AT+ +R+ VD LP+
Sbjct: 1148 MLDKAK-YDAVLMDIQMPVMDGLTATKELRKR------------YPVD--------ELPV 1186
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+AMTA + ++ L GM+ +++KP L+ L+ +
Sbjct: 1187 IAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFDTLSHWI 1227
>gi|334120096|ref|ZP_08494179.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457278|gb|EGK85903.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1232
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 240/473 (50%), Gaps = 33/473 (6%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL-DTDLSSTQRDYAQTAQIC 426
+Q+ V A+ A+ AKS+FL+++SHE+RTP+N ILG +++ D+ L++ + +
Sbjct: 684 LQKAVVAADTANRAKSEFLSSMSHELRTPLNAILGFSQVMVRDSSLNNQHLQHLEIINRA 743
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G+ L+ALIN++L+ +KIEA + +L FNL +L + +F K+++K ++L + V D
Sbjct: 744 GEHLLALINDILEMSKIEAGRSQLNESSFNLMRLLKTLEEMFRLKAKSKKLQLNLEVGDG 803
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP+FV GD G+ RQI+ NLVGN++KFTE G + ++V + V+ ET T+
Sbjct: 804 VPDFVSGDEGKLRQILINLVGNAIKFTEMGSVTLRV----KKKVEKSLGAETAEFSDTQT 859
Query: 547 GVCRSGTGQFNTLSGLEAADGRN-SWDKFKHLIDAEGFQSNASIIN---MMASNGGSEDV 602
+ +G +L+ AA R W GF + S+ + + A + E +
Sbjct: 860 KLVGAGCEHSESLAVETAAIQRKPGW--------CTGFNQSESLAHCDCVDAHDLHPEVL 911
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
L +EDTG+GI ++F PF Q + + GTG+GL IS+ V++M G I+
Sbjct: 912 RLQFEIEDTGLGIAAEEMNKLFEPFEQTKTG-QKSQQGTGLGLPISRKFVQMMGGDITVS 970
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIK-QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P++GS F+F + +K Q K L P + +VVD++ V
Sbjct: 971 STPELGSKFAFDIQISLAAPSEIKILKPQKKVISLAPNQPEYRILVVDDRADNCLVIDRL 1030
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L+ LGI+V+ + ++A + ++ +QP +I W+ + + K
Sbjct: 1031 LSPLGILVREARDGQEAIAVWED--------WQPHLI------WMDMQMPVMDGYEATRK 1076
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
H +I+ T + +E + G D + KP A ++ A ++++L
Sbjct: 1077 IKAHPLGKQTVIVALTASAFEEERQTILGAGCDDFMRKPFEAKILFAKMEELL 1129
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ--SPHCFDACFMDIQMPEMD 918
+ILVVDD N +V L G V A + A+ + PH +MD+QMP MD
Sbjct: 1013 RILVVDDRADNCLVIDRLLSPLGILVREARDGQEAIAVWEDWQPHLI---WMDMQMPVMD 1069
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G+EATR+I+ G +V I+A+TA L G D
Sbjct: 1070 GYEATRKIKAHPL--------GKQTV------------IVALTASAFEEERQTILGAGCD 1109
Query: 979 GYVSKPFEEENLYRELAKFFKSKPL 1003
++ KPFE + L+ ++ + + L
Sbjct: 1110 DFMRKPFEAKILFAKMEELLGVRYL 1134
>gi|345862744|ref|ZP_08814958.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345126086|gb|EGW55952.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 1658
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 212/428 (49%), Gaps = 43/428 (10%)
Query: 584 QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643
+S ++++ + ++ V + + D+GIGI +F F+QAD STSRHYGGTG+
Sbjct: 1041 ESGEVVVSVRLLDRSAQQVRVGFEIRDSGIGIDPQRLPHLFDAFVQADGSTSRHYGGTGL 1100
Query: 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL 703
GLSI K LVELM+GQ+S SR GS F F FG E +Q + + P +G+
Sbjct: 1101 GLSICKQLVELMQGQLSVESRLGEGSCFRFELAFGLQPE------QQPRQFEPDPDLQGM 1154
Query: 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEK 762
+ ++VD+ P+ V L V++ ++ +A K +P ++L++
Sbjct: 1155 RVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMD- 1213
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
W +G +A + K + + PK+IL+ ++ +++A G D V++KP
Sbjct: 1214 --WHMPPVNGIDA-VQHIKQELALVQQPKMILVTAFGREELMQQSQAAGL-DAVLLKPAN 1269
Query: 823 ASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGAL 879
S++ + V +++GRG + G G+ K+L+V+DN +N+ VA L
Sbjct: 1270 PSLLFDTIMSVF-----KESGRGRETVPAARFGATPGRLKGKVLLVEDNPINQQVALELL 1324
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
+ FG V A +AAL +LQ FD MD+QMP MDG+E TR+IRQ
Sbjct: 1325 QSFGLLVLVAEDGRAALRRLQE-SAFDLVLMDVQMPLMDGYETTRQIRQ----------- 1372
Query: 940 GGSSVDGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ EL LP++AMTA + ++CL GM Y+SKP + L L +
Sbjct: 1373 ----------QPELQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWL 1422
Query: 999 KSKPLSGA 1006
+ LS A
Sbjct: 1423 GEQLLSEA 1430
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 94/147 (63%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMN I+GM L L T+L+S Q DY Q Q L+ +IN+ LD +
Sbjct: 909 KSNFLANMSHEIRTPMNAIIGMSHLALQTELTSKQLDYLQKIQSSSHHLLGIINDTLDFS 968
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA +LE+E F L +L+++ +L + K+ + +EL VP+ ++GDP R Q+
Sbjct: 969 KIEAGRLEIETTHFQLDEVLENLATLLNIKAVERRLELVFERELDVPDRLIGDPLRLGQV 1028
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERT 528
+ NL N++KFTE G + V V L +R+
Sbjct: 1029 LLNLAQNAIKFTESGEVVVSVRLLDRS 1055
>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid [Agrobacterium
sp. H13-3]
gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid [Agrobacterium
sp. H13-3]
Length = 1223
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 183/664 (27%), Positives = 292/664 (43%), Gaps = 138/664 (20%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++Q L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL ++L + Q+ +
Sbjct: 655 EELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVK 714
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G AL+ +IN++LD +KIEA +++L +V F+ ++DV+SL S + K IEL V +
Sbjct: 715 SGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDP 774
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
V V+GD GRFRQ++TNLVGN+VKFTE GH+ +++ ++ ET+L+ E
Sbjct: 775 SVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIELS------AQSAEASETILSLRVE 828
Query: 546 EGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605
+ SG G+ A +DKF +D + +
Sbjct: 829 D----SGI-------GIPADKLETIFDKFSQ-VDGSATRRH------------------- 857
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
E TG+G+ +I+ LV L G I+ VS
Sbjct: 858 ---EGTGLGL------------------------------AITVGLVGLFDGTINVVSEV 884
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GSTF F +V E K+ + L + ++ +V+D+ V + L
Sbjct: 885 GKGSTFEVNIPF-----HVTE--KRRDAPLLAMAIEDIRVLVIDDNDVNRRILAEQLKTW 937
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
GI +++D S ++ F D I+++ + +G + + + +
Sbjct: 938 GI---DGHAVQDGPSGIAVLQEAASLGFAIDAIILDYHMPVM---NGLDV-VERIRADSR 990
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVI----MKPLRASMIAACLQQV---LSTEN 838
+ + L + ++ DE F D + MKP RA ++ + L V + +
Sbjct: 991 FDDIAIVFLTSMDVVGDES------LFTDLSVQAHLMKPARARLLRSTLFDVVRDVRQKR 1044
Query: 839 KRQAGRGVPNGSS-----FHQGLLRGKK-------------------ILVVDDNGVNRMV 874
RQ +G+ +G S G K+ +LV +DN VN++V
Sbjct: 1045 ARQDPQGLASGGSDAPVQPDNGPTDKKRRVVSPPTTVPDRRRPCLVDVLVAEDNDVNQIV 1104
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
L++ G + K A+ + H MD+ MP M+G +AT IR E A
Sbjct: 1105 FTQILQQAGLRFLIVGNGKKAVQAWEE-HNPAVILMDVSMPVMNGHQATLAIRAAEQAAA 1163
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
D H+PI+ +TA A + C+ GMD Y+SKP E L ++
Sbjct: 1164 ----------------DGRHVPIIGVTAHTQDADRELCIAAGMDDYLSKPISPEILEDKI 1207
Query: 995 AKFF 998
A++
Sbjct: 1208 AQWL 1211
>gi|421495807|ref|ZP_15943063.1| two-component system sensor protein [Aeromonas media WS]
gi|407185191|gb|EKE58992.1| two-component system sensor protein [Aeromonas media WS]
Length = 1060
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 179/659 (27%), Positives = 283/659 (42%), Gaps = 125/659 (18%)
Query: 350 ILYGAAIH-IVKVEDDFHKMQELKVRAEAADVA--KSQFLATVSHEIRTPMNGILGMLAL 406
+L+GA + +V+ + +E + EAA +A K F+A +SHEIRTPMN I+G+ L
Sbjct: 319 LLFGAGVAALVR-----SRRREQLAQQEAARLAQVKGDFIANMSHEIRTPMNAIMGLTYL 373
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
L L Q + G+AL+ +IN++LD +KIE+ +LELE V F++ +LD V +
Sbjct: 374 LEQGGLDDGQHALVRKIHQAGQALLGIINDILDFSKIESGRLELERVPFSMEEVLDHVAA 433
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL-A 525
+ S K +EL V + + ++GD R Q++ NL GN++KFTERG + VKV L A
Sbjct: 434 IMSTCVGEKHLELVVSSAPEQVSHLIGDALRLEQVLLNLTGNAIKFTERGEVEVKVELEA 493
Query: 526 ERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQS 585
E+ + TLL + G+ Q N + AD S +F
Sbjct: 494 EQDGMA------TLLFRVRDTGIGIPPEQQANIFNAFSQADSSTS-RRF----------- 535
Query: 586 NASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGL 645
GG TG+G+ +S
Sbjct: 536 -----------GG------------TGLGLTIS--------------------------- 545
Query: 646 SISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKA 705
+ LV LM G+I S GS F F + + + E L + +
Sbjct: 546 ---RRLVNLMGGEIGVTSELGKGSEFWFRVRLEQVE----------RPEALSERLQHISL 592
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
++ D+ V + LG S + ++ A + L ++F D+IL++ W
Sbjct: 593 LIADDNQVTRDALSMTVGSLG----WQSRVVESGEQALHHLLRQGERF--DVILLD---W 643
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
I G L + + P +I++AT S+DE D V+ KP+ S
Sbjct: 644 IMPGMDGLETCLAIRRAFEQQERSP-IIIMATAYSQDELMHRPGSEQVDLVLHKPVTGSS 702
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+ + +++ KR + +G + L G +L+VDD+ +N VA L++ GA
Sbjct: 703 LYNAVARLI--HEKRDHVEPLESGQRRLR--LPGVHVLLVDDSDINLEVATRLLQREGAE 758
Query: 886 VECAASAKAALDKLQSP-HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
V A + AL L P D MD+QMP MDG+EATRR+RQ+ +
Sbjct: 759 VITAIDGERALACLADPARRIDLVLMDVQMPVMDGYEATRRLRQLPGREET--------- 809
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
P+LA+TA V + L GM+ +++KP + E L L ++ L
Sbjct: 810 -----------PVLALTAGVFKDQREAALASGMNDFIAKPLDVEQLIATLLRYLPDSVL 857
>gi|345876523|ref|ZP_08828291.1| putative L,D-transpeptidase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344226490|gb|EGV52825.1| putative L,D-transpeptidase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 1675
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 212/428 (49%), Gaps = 43/428 (10%)
Query: 584 QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643
+S ++++ + ++ V + + D+GIGI +F F+QAD STSRHYGGTG+
Sbjct: 1058 ESGEVVVSVRLLDRSAQQVRVGFEIRDSGIGIDPQRLPHLFDAFVQADGSTSRHYGGTGL 1117
Query: 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGL 703
GLSI K LVELM+GQ+S SR GS F F FG E +Q + + P +G+
Sbjct: 1118 GLSICKQLVELMQGQLSVESRLGEGSCFRFELAFGLQPE------QQPRQFEPDPDLQGM 1171
Query: 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEK 762
+ ++VD+ P+ V L V++ ++ +A K +P ++L++
Sbjct: 1172 RVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMD- 1230
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
W +G +A + K + + PK+IL+ ++ +++A G D V++KP
Sbjct: 1231 --WHMPPVNGIDA-VQHIKQELALVQQPKMILVTAFGREELMQQSQAAGL-DAVLLKPAN 1286
Query: 823 ASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGAL 879
S++ + V +++GRG + G G+ K+L+V+DN +N+ VA L
Sbjct: 1287 PSLLFDTIMSVF-----KESGRGRETVPAARFGATPGRLKGKVLLVEDNPINQQVALELL 1341
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
+ FG V A +AAL +LQ FD MD+QMP MDG+E TR+IRQ
Sbjct: 1342 QSFGLLVLVAEDGRAALRRLQE-SAFDLVLMDVQMPLMDGYETTRQIRQ----------- 1389
Query: 940 GGSSVDGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ EL LP++AMTA + ++CL GM Y+SKP + L L +
Sbjct: 1390 ----------QPELQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWL 1439
Query: 999 KSKPLSGA 1006
+ LS A
Sbjct: 1440 GEQLLSEA 1447
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 94/147 (63%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMN I+GM L L T+L+S Q DY Q Q L+ +IN+ LD +
Sbjct: 926 KSNFLANMSHEIRTPMNAIIGMSHLALQTELTSKQLDYLQKIQSSSHHLLGIINDTLDFS 985
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA +LE+E F L +L+++ +L + K+ + +EL VP+ ++GDP R Q+
Sbjct: 986 KIEAGRLEIETTHFQLDEVLENLATLLNIKAVERRLELVFERELDVPDRLIGDPLRLGQV 1045
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERT 528
+ NL N++KFTE G + V V L +R+
Sbjct: 1046 LLNLAQNAIKFTESGEVVVSVRLLDRS 1072
>gi|388255746|ref|ZP_10132927.1| MmoS [Cellvibrio sp. BR]
gi|387939446|gb|EIK45996.1| MmoS [Cellvibrio sp. BR]
Length = 794
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 189/646 (29%), Positives = 278/646 (43%), Gaps = 116/646 (17%)
Query: 357 HIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD 411
H +++ K ++L+ R AE A AKSQFLAT+SHEIRTPMNG++GML +L DT
Sbjct: 241 HAIEIALLTEKEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLEMLRDTP 300
Query: 412 LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK 471
L Q+ Y G+ L I++D+L +
Sbjct: 301 LDDNQKHYIDVIHRSGE---------------------------TLLTIINDILDYSKIE 333
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531
+ +E F D+ LV N V+
Sbjct: 334 AGKMELEETTFELDE------------------LVENCVQL----------------FGA 359
Query: 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQS-NASII 590
T K + L GG GV R G L + N++ KF +EGF S S++
Sbjct: 360 TANKRQIELFGGLLPGVPRWLRGDPTRLRQIIINLLGNAF-KFT----SEGFISLQVSVL 414
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
+ ++ V L V+D+GIGI +S+ +F F QAD+ST+R YGGTG+GL+I K
Sbjct: 415 QQL----DNDRVELHFAVQDSGIGIDMSSAGNLFDSFNQADASTTRKYGGTGLGLAICKS 470
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
L ELM G+I S GSTF FT + KSE L + K ++V+
Sbjct: 471 LAELMGGKIGVESEKGRGSTFWFTVRLAQESVCDLTSAPPEKSEHL---LRNKKLLLVEG 527
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGE 769
+ A G+ V+ + S K A + K+ + S E P D + V+ +
Sbjct: 528 GVMLAEFIARCCKDWGVNVEAARSAKTALAQLKHAMHSGE----PFDFVGVDYSL---PD 580
Query: 770 DSGFN-AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
SG AQLL P +LP + ++ D+ + +V+ KP+ +
Sbjct: 581 ASGLEFAQLLRDVP--EFSELPLFMFSPGDVYHDQLQLRRLA--VHSVVRKPISMKL--- 633
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK--KILVVDDNGVNRMVAAGALKKFGATV 886
LQ+ L + +A +P+ + Q L + ++LV +DN VNRMV G L K
Sbjct: 634 -LQRELIALSGHEAAPELPSERNKQQDLAKFSHLRVLVAEDNPVNRMVIKGLLGKLSIVP 692
Query: 887 ECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
A + A D Q + F+ MD +MPEMDGFEATR IR E + +
Sbjct: 693 VFAENGVEACDAAQQQKNRFNLVLMDCEMPEMDGFEATRSIRDYERR------------E 740
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
G +PI+A+TA + + CGM+ Y+SKP + LY
Sbjct: 741 GLTP-----IPIIALTAHALQEHREAVFACGMNYYLSKPITLDTLY 781
>gi|390448937|ref|ZP_10234551.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
gi|389665252|gb|EIM76726.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
Length = 945
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 196/714 (27%), Positives = 290/714 (40%), Gaps = 174/714 (24%)
Query: 331 WTALTTAFFLFVIGLLVGYILYGAAIH-IVKVEDDFHK----MQELKVRAEAADVAKSQF 385
W A + LL+ ++ I I K + H + K++A++AD KS+F
Sbjct: 217 WGLFGVAGAMVGASLLLALRIFEPMIRRISKAHQELHSANISLAAEKIKAQSADRTKSEF 276
Query: 386 LATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
LA +SHEIRTPMNG++GM LL T+L Q + G AL+ +IN++LD +KI+A
Sbjct: 277 LANMSHEIRTPMNGVMGMAELLARTNLDQRQAMFVDVIVKSGTALLTIINDILDFSKIDA 336
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE-----FVLGDPGRFRQ 500
+L+L+ F +R ++ ++A VS +V E V DP +
Sbjct: 337 GQLKLDEAPFRIREAIE---------------DVAALVSSRVAEKNLELIVRVDP----E 377
Query: 501 IITNLVGNSVKFTERGHIFV--KVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNT 558
+ + +G+ +F + V V ER V
Sbjct: 378 LSASFIGDVGRFRQIATNLVGNAVKFTERGHV---------------------------- 409
Query: 559 LSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLS 618
LID G + G + VT V VEDTGIGIP
Sbjct: 410 ------------------LIDVSG-----------KTKGNTAQVT--VRVEDTGIGIPPD 438
Query: 619 AQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678
E VF F Q DSS++R + GTG+GL+I+ L ELM G I S GSTF FT F
Sbjct: 439 KLEAVFDKFAQVDSSSTRRHEGTGLGLAIAVKLAELMGGSIEATSEVGKGSTFVFTLPFA 498
Query: 679 KCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDA 738
D + P G + V+D+ + + LN G A
Sbjct: 499 I-------DTANAIQATAPVDVSGARVFVIDDNAINREILLEQLNSWGFECA-------A 544
Query: 739 SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKL---PKL--I 793
+ + GL + Q D DC I + Q+ D K+ P L I
Sbjct: 545 AESGAVGLAFLQRSAQLD---ARVDCVI------LDYQMPDMNGADVAKKIKADPALAGI 595
Query: 794 LLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN-- 848
L S D+ D A+ G A + KP R+SM+ L V+ Q R +P+
Sbjct: 596 PLVLLTSVDQTDTARLVSECGIA-AHLNKPTRSSMLLETLVSVM------QVSRALPDQP 648
Query: 849 ---------------GSSFHQGL--LRGKK----ILVVDDNGVNRMVAAGALKKFGATVE 887
+ +GL RG +LV +DN VN++V + L G
Sbjct: 649 LGDAHAPAKPIQIHASTPLERGLSGSRGANGPLDVLVAEDNEVNQLVFSQILDGMGLKYR 708
Query: 888 CAASAKAALDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
A + K A++ L++ P MD+ MPEM+GFEAT IR+ E+ +
Sbjct: 709 IAGNGKTAVEMLRTLKPRL---VLMDVSMPEMNGFEATAAIREHEAAS------------ 753
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
GT + PI+ +TA + ++CL GMD Y+ KP + L ++ + K
Sbjct: 754 GT------YTPIIGITAHALRGDREKCLGAGMDDYLPKPISPQKLAEKITHWRK 801
>gi|262195410|ref|YP_003266619.1| ATP-binding protein [Haliangium ochraceum DSM 14365]
gi|262078757|gb|ACY14726.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
14365]
Length = 1922
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 235/478 (49%), Gaps = 38/478 (7%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
++ K AE A+ AKS FLA+V+HE+RTPMNGI+GM+ LLL T +TQRDY +TA+
Sbjct: 1480 LRSLEHSKELAERANRAKSDFLASVNHELRTPMNGIIGMIELLLGTRTDATQRDYLETAR 1539
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
L+ +I + LD ++IEA KLELE F LR LD +L + + KG+++ + ++
Sbjct: 1540 TAADQLMGIIRDTLDLSRIEAGKLELELAPFQLRECLDSLLRTIGPRVQAKGLDMRLELA 1599
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
D+VP+ ++GD GR Q++ NL+GN+VKFT+ G LA + + +D T
Sbjct: 1600 DEVPDELVGDRGRLLQVLLNLLGNAVKFTDPGGTISLRVLA---LPAPEPEDST-----G 1651
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
EE +G + G EA D S D + +S + ++ N
Sbjct: 1652 EESRDSAGADGDASADGDEAGDNAAS--------DRDPGRSRRRVPTLLRLN-------F 1696
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSST-SRHYGGTGIGLSISKCLVELMRGQISFVS 663
VC DTG GI AQE +F PFMQA+S+ S G+G+GL+IS LV LM G +S S
Sbjct: 1697 RVC--DTGEGISREAQELIFEPFMQAESNNASAKREGSGLGLAISSQLVGLMGGTLSVES 1754
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
GS F+FTA F + E+ + +D L ++ ++ + V L
Sbjct: 1755 ELGAGSCFTFTACFDRPVEHELGGAVKGGEDDADELMPPLNILIAEDNTINQLVVTRLLQ 1814
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
R G +++ +A +++G D L+ D + D + + +
Sbjct: 1815 REGHSCVIANDGAEAVRKSESG----------DFDLILMDVRMPRLDGHAATRQIRKREE 1864
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
G +L +I L + + + A G D + KPLR ++ L+ + ++ +Q
Sbjct: 1865 GTDRRL-HIIALTASATTEIVGACTASGM-DDYLSKPLRMELLRGKLRALQRRKHAQQ 1920
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ + G V G L+ IL+ +DN +N++V L++ G + A A+ K
Sbjct: 1773 EHELGGAVKGGEDDADELMPPLNILIAEDNTINQLVVTRLLQREGHSCVIANDGAEAVRK 1832
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+S FD MD++MP +DG ATR+IR+ E +GT +R L I+
Sbjct: 1833 SESGD-FDLILMDVRMPRLDGHAATRQIRKRE--------------EGTDRR----LHII 1873
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
A+TA C GMD Y+SKP E L +L + K
Sbjct: 1874 ALTASATTEIVGACTASGMDDYLSKPLRMELLRGKLRALQRRK 1916
>gi|10241599|emb|CAC09578.1| histidine kinase receptor [Fagus sylvatica]
Length = 247
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 150/239 (62%), Gaps = 13/239 (5%)
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
++P A +++YH+ RLGI V++ S + S SS +K D++LVE++ W
Sbjct: 2 QRPSLAKMSRYHIQRLGISVEVVSDLNQGWSK-----ISSGNKVV-DMVLVEQEVW--DR 53
Query: 770 DSGFNAQ-LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D+ +A +++ K H PKL LLA +IS + A +GGF+ MKPLRASM+AA
Sbjct: 54 DTHISASFIINLKKIDHGIP-PKLFLLANSISSSRTNAATSGGFSPYTTMKPLRASMLAA 112
Query: 829 CLQQVLSTENKRQ-AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
LQ+ + +K R +P+ S + L RG+KIL++DDN VN VAAGALKK+GA V
Sbjct: 113 SLQRAMGVGSKGNLRNRELPSLS--LRSLPRGRKILIIDDNNVNLKVAAGALKKYGADVV 170
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
CA S A++ L+ PH FDACFMDIQMPEMDGFEATR+IR ME N ++ G +SV+
Sbjct: 171 CAESRIKAIEFLKPPHRFDACFMDIQMPEMDGFEATRKIRDMEHCFNNRIRRGEASVEA 229
>gi|334704936|ref|ZP_08520802.1| two-component system sensor protein [Aeromonas caviae Ae398]
Length = 940
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 175/636 (27%), Positives = 273/636 (42%), Gaps = 119/636 (18%)
Query: 367 KMQELKVRAEAADVA--KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
+ +E + EAA +A K F+A +SHEIRTPMN I+G+ LL L Q +
Sbjct: 328 RHKEQLAQQEAARLAQVKGDFIANMSHEIRTPMNAIMGLTYLLEQGGLDDGQHALVRKIH 387
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
G+AL+ +IN++LD +KIE+ +LELE V F+L +LD V ++ S K +EL V +
Sbjct: 388 QAGQALLGIINDILDFSKIESGRLELERVPFSLEEVLDHVAAIMSTCVGQKHLELVVSSA 447
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL-AERTMVKTDAKDETLLNGG 543
+ ++GD R Q++ NL GN++KFTERG + VKV L AE+ + TLL
Sbjct: 448 PEPVSHLIGDALRLEQVLLNLTGNAIKFTERGEVEVKVVLEAEQDGMA------TLLFRV 501
Query: 544 TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603
+ G+ Q N + AD S +F GG
Sbjct: 502 RDTGIGIPPEQQANIFNAFSQADSSTS-RRF----------------------GG----- 533
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
TG+G+ +S + LV LM G I S
Sbjct: 534 -------TGLGLTIS------------------------------RRLVNLMGGDIGVTS 556
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
GS F F + + + E L + + ++ D+ V +
Sbjct: 557 ELGKGSEFWFRVRLEQVE----------RPEALNERLQHISLLIADDNQVTRDALSMTVG 606
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
LG S + ++ A + L ++F D+IL++ WI G L +
Sbjct: 607 SLG----WQSRVVESGEQALHHLLRQGERF--DVILLD---WIMPGMDGLETCLAIRRAF 657
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
+ P +I++AT+ S+DE D V+ KP+ S + + +++ KR+
Sbjct: 658 EQQERSP-IIIMATSYSQDELMHRPGSDQVDLVLHKPVTGSSLYNAVARLI--HEKREHV 714
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP- 902
+ +G + L G IL+VDD+ +N VA L++ GA V A + AL L P
Sbjct: 715 DPLESGQRRLR--LPGVHILLVDDSDINLEVATRLLQREGAEVITAIDGERALACLADPA 772
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
D MD+QMP MDG+EATRR+R + + P+LA+TA
Sbjct: 773 RRIDLVLMDVQMPVMDGYEATRRLRLLPGREET--------------------PVLALTA 812
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
V + L GM+ +++KP + E L L ++
Sbjct: 813 GVFKDQREAALASGMNDFIAKPLDVEQLIATLLRYL 848
>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
Length = 1947
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 205/407 (50%), Gaps = 53/407 (13%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V + V D+GIG+ Q R+F F QADSST+R YGGTG+GL+ISK LV +M G+I
Sbjct: 1367 EVRMHFSVRDSGIGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGEIW 1426
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S P VGS F FTA F K + + E +DL P L +VVD+ +
Sbjct: 1427 VESEPGVGSDFQFTACFEKQQGEIPE--PTVAPDDLGP----LPILVVDDNQSAREILAA 1480
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L LG +K +S + A K +++ F+ LV D + G D QL+
Sbjct: 1481 ILESLGFQIKTASGGRQAVEMIKAA--DADEPFK----LVMLDWRMPGLDGVQTGQLI-- 1532
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ + + PK+I++ T ++E + G + KP AS + L +++ R
Sbjct: 1533 QEDTTLKNQPKIIMI-TAFGREEMQEGAGGLAISGFLTKPATAS---SLLDEIM-----R 1583
Query: 841 QAGRGV---PNGSSFHQGL------LRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
GR V P G Q + LRG ++L+V+DN +N+ +A L G TV+ A +
Sbjct: 1584 AMGREVAENPRGGDRKQAVKEFAAELRGAQVLLVEDNEINQELAVEILTTHGMTVQVANN 1643
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+ ALD L + H FD MD QMP MDG+EATR IR + A +D
Sbjct: 1644 GQEALD-LIAAHQFDGVLMDCQMPVMDGYEATRHIR-----------------NNPATKD 1685
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP+LAMTA+ + ++ ++ GM+ +++KP +L++ +AK+
Sbjct: 1686 ---LPVLAMTANAMVGDKEKVIEAGMNDHIAKPINLADLFKTMAKWI 1729
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 99/142 (69%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A+ A+ AKS FLA +SHEIRTPMN I+GM L L TDL+S QR+Y + ++L+ +I
Sbjct: 1211 ADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLTSKQRNYIEKVHRSAESLLGII 1270
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++EAV F L ++D+++SL K+ + G+EL + V +P ++GD
Sbjct: 1271 NDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLVGLKAEDHGLELLLDVPPDLPTALIGD 1330
Query: 495 PGRFRQIITNLVGNSVKFTERG 516
P R QI+ NL N+VKFTE G
Sbjct: 1331 PLRLSQILINLGNNAVKFTEDG 1352
>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 954
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 195/404 (48%), Gaps = 34/404 (8%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIG+ AQ ++F F QADSST+R YGGTG+GL+I K LVELM G+I
Sbjct: 569 VMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKYGGTGLGLTICKRLVELMGGEIGL 628
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P +G+ FT F + + S D F G + +VD+ P ++ QYH
Sbjct: 629 QSMPGLGTRIWFTVRFALQADAAPPVMPPLTSND----FAGRRVCLVDDNPTNRSLLQYH 684
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
++ G + S++ DA S ++ D D+ +++ I D G QL
Sbjct: 685 VS--GWNMHHESAV-DAPSALALLRQAAADGTPFDLAIID----IHMPDIG-GLQLCRLI 736
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
+ LI+L + + AK G A + KP+R +A C++ +L ++ +
Sbjct: 737 KEDPAIRATHLIVLTAFGQRGDSIAAKEAG-ASAYLPKPVRERQLADCIRLILGRKDSDE 795
Query: 842 AGRGVPNGSSFHQGLLR-GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ + + + +++LVVDDN VN+ VA L+K G V+ A + AL +
Sbjct: 796 TSTPLITRHTMSEAQAQAAQRLLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAV- 854
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
H + FMD QMPE+DG E TR IR E HLPI+AM
Sbjct: 855 CRHQYPLVFMDCQMPELDGLETTRLIRSQEQAGT-------------------HLPIIAM 895
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
TA+ + + CLK GMD ++SKP + L L+++ S L+
Sbjct: 896 TANAMAGDRENCLKAGMDDFISKPIVPDQLREILSRWLPSARLT 939
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 113/156 (72%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ E + +A A AK+ FLAT+SHEIRTPMNG+LGM LLLDT LS+ QRDY QT +
Sbjct: 404 EISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLDTALSTEQRDYLQTLRHS 463
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
++L+ +IN++LD +KIEA K +E + F+LR ++D L + + S+++ +EL + +
Sbjct: 464 SESLLRIINDILDFSKIEAGKFTIEQIPFDLRMTIEDTLDMLAPASQDRHLELVGLIDAQ 523
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P V+GDPGR RQ++TNL+GN++KFTE+G + ++V
Sbjct: 524 TPRTVIGDPGRIRQVLTNLLGNAIKFTEQGEVLIQV 559
>gi|167945734|ref|ZP_02532808.1| sensor histidine kinase with ATPase domain, two fused [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 415
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 203/405 (50%), Gaps = 45/405 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
+ D+GIGI +F F+QAD STSRHYGGTG+GLSI K LVELM+GQ+S SR
Sbjct: 12 IRDSGIGIDPQRLPHLFDAFVQADGSTSRHYGGTGLGLSICKQLVELMQGQLSVESRLGE 71
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F F FG E +Q + + P +G++ ++VD+ P+ V L
Sbjct: 72 GSCFRFELAFGLQPE------QQPRQFEPDPDLQGMRVLLVDDNPMVRTVLADMLRSFSF 125
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
V++ ++ +A K +P ++L++ W +G +A + K +
Sbjct: 126 EVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMD---WHMPPVNGIDA-VQHIKQELAL 181
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG- 845
+ PK+IL+ ++ +++A G D V++KP S++ + V +++GRG
Sbjct: 182 VQQPKMILVTAFGREELMQQSQAAGL-DAVLLKPANPSLLFDTIMSVF-----KESGRGR 235
Query: 846 --VPNGS-SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
VP G L+G K+L+V+DN +N+ VA L+ FG V A +AAL +LQ
Sbjct: 236 ETVPAARFGATPGRLKG-KVLLVEDNPINQQVALELLQSFGLLVLVAEDGRAALRRLQE- 293
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL-HLPILAMT 961
FD MD+QMP MDG+E TR+IRQ + EL LP++AMT
Sbjct: 294 SAFDLVLMDVQMPLMDGYETTRQIRQ---------------------QPELQQLPVIAMT 332
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
A + ++CL GM Y+SKP + L L + + LS A
Sbjct: 333 AHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWLGEQLLSEA 377
>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
400]
gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
400]
Length = 1236
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 188/642 (29%), Positives = 274/642 (42%), Gaps = 131/642 (20%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E K AE A++ KS+FLA +SHEIRTPMN I+GML L T L+ Q+DY
Sbjct: 710 EAKQDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTVQQQDY---------- 759
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++A A+ L LR I++D+L ++ +E F DKV +
Sbjct: 760 --------LNKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVAFPLDKVLD 802
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVC 549
V+ N++K E+G E LL G+
Sbjct: 803 HVID-------------INAIKAQEKGV-------------------ELLLYAPVTAGLI 830
Query: 550 ------RSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED-- 601
R G N LS +A F + + + G D
Sbjct: 831 LYGDPLRLGQVIVNLLS------------------NAVKFTQTGEV-ELGCEDVGERDDR 871
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+T+ V DTGIGI Q +F F QAD ST+R YGGTG+GLSISK LV +M G +
Sbjct: 872 ITMKFWVRDTGIGISKDQQAMLFDAFSQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQV 931
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GS FSFT F +E V + +P L +VVD+ P +A+ Y
Sbjct: 932 ESELGSGSIFSFTISFEIAEEQVIAPLV------VPEQLNNLTTLVVDDNP--SALQIYS 983
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLD 779
+M S + A S K L K D++L++ W+ E +G + + +
Sbjct: 984 ----TLMTDFSFGVNTADSGQK-ALDILRKK-PVDLLLLD---WMMPEMNGCDVIKAIDE 1034
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+G + K P +I+L T + + D V+ KP +AS + + + E K
Sbjct: 1035 MVADGSIAKRP-IIILMTAYAAEPLDHELQKNSVYAVLQKPFKASALFDEIINAFAKEPK 1093
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
A + L +L+V+DN +N+ VA+ LK G V A + + ALD +
Sbjct: 1094 LNAMPVIIEAEPAKASGL----VLLVEDNFINQQVASELLKSAGYEVVIADNGQVALDVI 1149
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
S FDA MDIQMP MDG AT +R+ SK +QM PI+A
Sbjct: 1150 DS-KPFDAVLMDIQMPVMDGLTATAELRKRYSK--QQM------------------PIIA 1188
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
MTA + ++ L GM+ +++KP L+ L+ + K
Sbjct: 1189 MTAHAMSGDKEKSLAAGMNAHITKPIVLTELFETLSHWIAYK 1230
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 863 LVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEA 922
LVVDDN + + + F V A S + ALD L+ D +D MPEM+G +
Sbjct: 970 LVVDDNPSALQIYSTLMTDFSFGVNTADSGQKALDILRKKPV-DLLLLDWMMPEMNGCDV 1028
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
KA ++M+ GS AKR I+ MTA E K + +
Sbjct: 1029 I--------KAIDEMVADGS----IAKRP----IIILMTAYAAEPLDHELQKNSVYAVLQ 1072
Query: 983 KPFEEENLYRELAKFFKSKP 1002
KPF+ L+ E+ F +P
Sbjct: 1073 KPFKASALFDEIINAFAKEP 1092
>gi|445494035|ref|ZP_21461079.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444790196|gb|ELX11743.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 1016
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 130/407 (31%), Positives = 204/407 (50%), Gaps = 41/407 (10%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E V L + V DTG G+ Q R+F F QAD+ST+RH+GGTG+GL+ISK LVELM G+I
Sbjct: 428 ERVRLRIDVRDTGPGLTPEQQARLFQAFTQADTSTTRHHGGTGLGLTISKRLVELMDGEI 487
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVT 718
S+P VGSTF F+AVFG + E LP P GL+ +VVD+ A+
Sbjct: 488 GLESQPGVGSTFHFSAVFGIG----------AVEEPLPLPDISGLRVLVVDDN---ASAR 534
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQL 777
+ + L M + +++ D A + + + + +P +I+L+ D + G + Q
Sbjct: 535 EIFMGMLSSM-RFAAACADGGQRAIDMVAQARSEGRPFNIVLL--DWQMPGMNGLETLQA 591
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ + P I++ T ++D G D ++ KP+ +S + + V +
Sbjct: 592 IRAQAEADGVDAPAFIMV-TAYNRDVLMDEARGIAIDAMLNKPVSSSTLLDSVSTVFGKD 650
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+ + +RG +L+V+DN VN+ VA L G V+ AA+ AL
Sbjct: 651 LRSCRRTRRRADHMAAEEAVRGAWLLLVEDNEVNQEVAQQILSDAGIRVDIAANGAMALA 710
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
KL +D MD QMP MDG++ATR++R+ AN LP+
Sbjct: 711 KLAVAD-YDGVLMDCQMPVMDGYDATRKLREDARYAN--------------------LPV 749
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK-PL 1003
+AMTA+ + ++CL GM+ +++KP + L+ LA++ K K PL
Sbjct: 750 IAMTANAMVGDKEKCLDAGMNDFIAKPIDVAQLFTTLARWVKVKNPL 796
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 13/171 (7%)
Query: 357 HIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ 416
H V V +D KM KS FLA +SHEIRTPMNGI+GM L L T+LS Q
Sbjct: 267 HAVTVAEDATKM-------------KSDFLANMSHEIRTPMNGIIGMTHLALQTELSPKQ 313
Query: 417 RDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKG 476
R+Y + + + L+ +IN++LD +KIEA KL E V F + ++ ++ L ++++KG
Sbjct: 314 RNYLEKVESAARNLLGIINDILDFSKIEAGKLAFEQVDFYVEDVMANIADLSVMRAQDKG 373
Query: 477 IELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+EL ++ VP+ ++GDP RF Q++ NL N++KFT++G I V + + ER
Sbjct: 374 LELLFDIAPDVPQVLVGDPLRFGQVMINLTNNAIKFTQQGEIVVTIRVLER 424
>gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM
5476]
gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM
5476]
Length = 1068
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 175/631 (27%), Positives = 291/631 (46%), Gaps = 121/631 (19%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD-TDLSSTQRDYAQTAQICGKALIA 432
+AEAA AK +FL+ +SHEIRTP+N ILGM A+ + D + + + + L+A
Sbjct: 551 KAEAASRAKGEFLSRMSHEIRTPLNAILGMGAIAMQHLDDTKKVENCLKKLTLSSNHLLA 610
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
LIN+VLD +KIE+ K+EL + F+ RA L+ + +L+ +++ KG+E ++ +V E ++
Sbjct: 611 LINDVLDMSKIESGKVELRSEPFDFRAYLESLSNLYYGQAKEKGLEYKTVLTGEVDETLV 670
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552
GD R QI+TNL+ N++KFT G + L R K + L+ + C
Sbjct: 671 GDSLRLNQILTNLLSNALKFTPAGG---SIQL--RVSQKVQGSNTVRLHFEVTDTGC--- 722
Query: 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612
G++ + + ++ F+ Q ++S+ N G
Sbjct: 723 --------GIDEQNYQKIFESFE--------QEDSSVTNKYG-----------------G 749
Query: 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
G+ LS +R F M GG+ +S+S L E GSTF+
Sbjct: 750 TGLGLSIVKR-FSELM----------GGS---VSVSSRLGE--------------GSTFA 781
Query: 673 FTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMS 732
F K + E+ LK + VD+ P + L+R+G+ V+ +
Sbjct: 782 VELPFQKT----------VQPENNTADIVSLKVLAVDDDPDTISYIHSLLHRMGVQVECA 831
Query: 733 SSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPNGHVFKLP 790
+ A S ++ + ED DI V C + D GF ++ + PN +
Sbjct: 832 ENGNLAVSQVRDAHSRQEDF---DICFVS--CRLPDLD-GFETTRRIHEIVPN----ETT 881
Query: 791 KLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGS 850
+++ A + ++ E + A++G A V+ KPL AS I + + + + +
Sbjct: 882 AVLITAYDAAEIEKEAAQSG--ASGVLAKPLFASTITQTISSLKQEHPLFDSQDSM--DA 937
Query: 851 SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSP-HCFDAC 908
FH GK +L+V+DN +NR +A L+ GA VECA A++ QSP +D
Sbjct: 938 DFH-----GKHLLLVEDNQLNREIAVELLRITGAEVECAKDGIEAVELFSQSPVEHYDLI 992
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
MDIQMP MDG EATR+IR+++ + D +PI+AMTA+
Sbjct: 993 LMDIQMPRMDGLEATRQIRKLD------------------RPDAGSVPIVAMTANAFAED 1034
Query: 969 FDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+ GM+ ++SKP + + L+ ++ F +
Sbjct: 1035 EHKSKAAGMNAHLSKPLDIKILFAQMKVFLR 1065
>gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1]
gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1]
Length = 1248
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 202/418 (48%), Gaps = 72/418 (17%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
DV L V DTGIG+ + R+F F QAD+ST+R +GGTG+GL+ISK L ELM G +
Sbjct: 869 DVMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVG 928
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVTQ 719
S P GSTF FTA GK K ++ +P +G + +VVD+
Sbjct: 929 VDSVPGQGSTFWFTARLGKGK---------PRAPLIPEAELQGRRMLVVDDNE------- 972
Query: 720 YHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
N ++V M S++ DA + L + D D ++
Sbjct: 973 ---NARAVLVDMLSAMSFEVDAVDSGAKALDAIRDAVL---------------DLPYDVV 1014
Query: 777 LLDWK-PNG---------HVFKL--PKLILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
LDW+ P+ H +L P +++ T ++E K V++KP+ +
Sbjct: 1015 FLDWQMPDMDGLEVAEQIHSIRLPFPPHLIMVTAYGREEIIKGAQAADIGEVLIKPVSPA 1074
Query: 825 MIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
+ + +V +++ +R V G S LRG K+L+V+DN +N+ VA L+ G
Sbjct: 1075 ALFDSIMRVFASDQRRDEAEDVSEGGSVDHAALRGLKVLLVEDNDLNQEVAGEILRDAGI 1134
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
VE A + A++K ++ +D MD+QMP MDG ATR IR++
Sbjct: 1135 EVEIADNGLIAVEKARA-GVYDLILMDMQMPVMDGVTATREIRRL--------------- 1178
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+ LPI+AMTA+ + A D+CL+ GM+ +++KP + + ++ ++++ ++P
Sbjct: 1179 ------GHVDLPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFSTISRWCAAEP 1230
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 98/152 (64%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A KS FLA +SHEIRTPMN I+GM L L TDL Q+DY + Q G+ L+ +I
Sbjct: 713 AEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDLDPRQKDYVRKIQQSGQHLLGII 772
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KLE+EA +L +L++V +L SEK+ KG+EL V VP ++GD
Sbjct: 773 NDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDLMGD 832
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
R Q++ N N+VKFTE G I V V L E
Sbjct: 833 ALRLGQVLINYANNAVKFTEAGEIVVAVRLME 864
>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
Length = 1262
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 206/414 (49%), Gaps = 46/414 (11%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+I + N ++ +TL ++D+GIGI A ++F F QAD+ST+R +GGTG+GL+I
Sbjct: 690 LIKIEMLNLTAKQITLCFSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFGGTGLGLAIC 749
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGK-CKEY--VFEDIKQSKSEDLPPGFKGLKA 705
K LVE+M G I S+ + GS+FSFTA+FG+ KEY +F+ LP G+KA
Sbjct: 750 KRLVEMMGGNIWVESQLEQGSSFSFTALFGRQSKEYERIFK---------LPGDLHGIKA 800
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
++VD+ + Q LN + V D+ A L ++ D++ + D
Sbjct: 801 LIVDDNKTSRTILQQELNTFSLQVIAV----DSGEAAIVALETAAQTQPYDLVFL--DWK 854
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKL-ILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
+ G + A+ + N LP + I++ T S++ + D + KP+ S
Sbjct: 855 MPGMNGIETARCIKQNAN-----LPPVSIIMMTAFSRENFLTETDKDYLDAFLTKPVTQS 909
Query: 825 MIAACLQQVLSTEN-KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG 883
++ + V + K N + ++ +ILVV+DN +N+ V ++ G
Sbjct: 910 LLFDTIMTVFGKNDLKTSPFFNKQNTITIDLTTIKDARILVVEDNSINQQVIQKTIESEG 969
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
VE A + K A+ + + H FDA MD+QMPEMDG EAT+ IRQ N
Sbjct: 970 LIVEIANNGKEAVMMVDNIH-FDAVLMDMQMPEMDGMEATQLIRQKTQHDN--------- 1019
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
LPI+AMTA + ++ L GM+ Y++KPF+ ++L+ L K+
Sbjct: 1020 -----------LPIIAMTAHAMSGVREKLLAVGMNDYITKPFDVDDLFSVLEKW 1062
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 108/162 (66%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
K+ K +AE A+ AKS FLA +SHEIRTPMNGI+G+ L L TDL++ Q+DY +
Sbjct: 538 KLLTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKTDLTAEQQDYLTHLESS 597
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+AL+ +I+++LD +KIEA L++E V F+L +L + S+ + KG+EL + +
Sbjct: 598 SQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLGMRIEEKGLELLLDIDKS 657
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
VP +++GDP R Q++ NLV N++KFT++G I +K+ + T
Sbjct: 658 VPHYLIGDPLRLGQVLINLVTNAIKFTDQGEILIKIEMLNLT 699
>gi|306017869|gb|ADM77988.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017871|gb|ADM77989.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017873|gb|ADM77990.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017875|gb|ADM77991.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017877|gb|ADM77992.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017879|gb|ADM77993.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017881|gb|ADM77994.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017883|gb|ADM77995.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017885|gb|ADM77996.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017887|gb|ADM77997.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017889|gb|ADM77998.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017891|gb|ADM77999.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017893|gb|ADM78000.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017895|gb|ADM78001.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017897|gb|ADM78002.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017899|gb|ADM78003.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017901|gb|ADM78004.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017903|gb|ADM78005.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017905|gb|ADM78006.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017907|gb|ADM78007.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017909|gb|ADM78008.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017911|gb|ADM78009.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017913|gb|ADM78010.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017915|gb|ADM78011.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017917|gb|ADM78012.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017919|gb|ADM78013.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017921|gb|ADM78014.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017923|gb|ADM78015.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017925|gb|ADM78016.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017927|gb|ADM78017.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017929|gb|ADM78018.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017931|gb|ADM78019.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017933|gb|ADM78020.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017935|gb|ADM78021.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017937|gb|ADM78022.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017939|gb|ADM78023.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017941|gb|ADM78024.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017943|gb|ADM78025.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017945|gb|ADM78026.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017947|gb|ADM78027.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017949|gb|ADM78028.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017951|gb|ADM78029.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017953|gb|ADM78030.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017955|gb|ADM78031.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017957|gb|ADM78032.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
gi|306017959|gb|ADM78033.1| AHK3 histidine kinase-like protein, partial [Picea sitchensis]
Length = 138
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/139 (62%), Positives = 102/139 (73%), Gaps = 3/139 (2%)
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATR 924
VDDN VNR VAAGALKK+GA V C S K+A+ L+ PH F+ACFMD+QMPEMDGFEATR
Sbjct: 1 VDDNIVNRRVAAGALKKYGANVICTDSGKSAISMLRQPHNFNACFMDVQMPEMDGFEATR 60
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
+IR E E NGG ++ + H+PILAMTADVI AT +ECL+CGMDGYVSKP
Sbjct: 61 QIRAAELANMECTSNGGETL---VTNNRWHVPILAMTADVIQATHEECLRCGMDGYVSKP 117
Query: 985 FEEENLYRELAKFFKSKPL 1003
FEEE LY+ LA FF + L
Sbjct: 118 FEEEQLYKALAPFFDKESL 136
>gi|345886792|ref|ZP_08838019.1| hypothetical protein HMPREF0178_00793 [Bilophila sp. 4_1_30]
gi|345037969|gb|EGW42463.1| hypothetical protein HMPREF0178_00793 [Bilophila sp. 4_1_30]
Length = 1459
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 172/644 (26%), Positives = 284/644 (44%), Gaps = 148/644 (22%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT-DLSSTQRDYAQTAQICGKALIAL 433
AE A AKS FL+ +SHEIRTPMN ++GM + + D D + + L++L
Sbjct: 945 AEQASRAKSDFLSRMSHEIRTPMNAVIGMTTIAAASLDNRDKLTDCLGKIGLSSRYLLSL 1004
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD ++IE+ K+ + F+ R+ ++ + SL +++NK I + + V E G
Sbjct: 1005 INDILDMSRIESGKVSIINEEFDFRSFVEGISSLIYPQAKNKNIVFDLNIEGVVDERYRG 1064
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DP R Q++ N++ N++KFT H VHL+ R + +D L + + R
Sbjct: 1065 DPLRLNQVLINILSNALKFTPEWH---SVHLSIRETRR--VRDRAYL-----QFIVR--- 1111
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+T G+E ++ F+ Q ASI + S GGS G+
Sbjct: 1112 ---DTGIGMEKGLLTRIFEPFE--------QGGASISH---SYGGS------------GL 1145
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +S+ LV LM G IS S P VGS
Sbjct: 1146 GLAISSN------------------------------LVSLMNGHISVSSTPGVGS---- 1171
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPP---GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
E+V E + ++ P + ++ +VVD+ V T LNR+G+ +
Sbjct: 1172 --------EFVVELPLLTVPDNTPKQDVSLEDIRVLVVDDDLVTCEHTTLILNRIGVDAE 1223
Query: 731 MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKL 789
+S K A + K+ L + +N L+DWK P+ +
Sbjct: 1224 YVTSGKAAVTRVKSALQRH---------------------TCYNIALVDWKMPDMDGVET 1262
Query: 790 PK------------LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ +I+ A + ++ E +AG D I KP+ S++ L L
Sbjct: 1263 ARSIRRIVGPDTLVIIMSAYDWTEIEARAREAG--VDFFISKPIFQSVVQDVL---LKAT 1317
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+RQ+ +P + G++IL+V+DN +N +A L+ A+V+ A + + A++
Sbjct: 1318 RRRQSAATLP----VQKEDFAGRRILLVEDNEINMEIARTLLEFRNASVDGACNGQQAVE 1373
Query: 898 KLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
+S P+ +DA MD++MP MDG AT+ IR G + D +
Sbjct: 1374 MFRSSPPNHYDAVLMDVRMPVMDGIAATQAIR------------------GLNRADAATV 1415
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
PILAMTA+ ++ K GM+ +++KP E E LY LA +F+
Sbjct: 1416 PILAMTANAFAEDIEQSRKAGMNEHLAKPIEPETLYARLASYFR 1459
>gi|333907033|ref|YP_004480619.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
gi|333477039|gb|AEF53700.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
Length = 1222
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 200/430 (46%), Gaps = 64/430 (14%)
Query: 586 NASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGL 645
+A ++ + E V L V+DTGIG+ Q+R+F + QADSST+R YGGTG+GL
Sbjct: 609 HAKVLKRWNDDEHKEWVQLQFSVQDTGIGMTPEQQQRLFKTYSQADSSTTRKYGGTGLGL 668
Query: 646 SISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKA 705
SISK L ELM GQI S GS F FT +E + KS + +G +A
Sbjct: 669 SISKNLTELMEGQIWVESEQGSGSCFKFTINIMVNQE------EPEKSIENASVLQGKRA 722
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
+VVD++ + L R G+ ++ +AKNG + + D
Sbjct: 723 LVVDDRNSAREILLSILQRFGL----------STDSAKNGKEALTKIMEAD--------- 763
Query: 766 ISGEDSGFNAQLLDWK-P--NG----HVFK------LPKLILLATNISKDECDKAKAGGF 812
+++ + +DWK P NG F+ PK IL+ T + KDE D
Sbjct: 764 --KQNAPYQIVFMDWKMPIMNGLDCIRTFQSIPLSIQPKTILI-TAVGKDELDDQIKDLN 820
Query: 813 ADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ--GLLRGKKILVVDDNGV 870
I KP+ AS++ + + + GR V S Q L GK IL+V+DN +
Sbjct: 821 LHGAITKPVNASILLNLVMSAFGHQLSYK-GRRVKRRDSERQIAQQLAGKHILLVEDNEI 879
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N+ +A+ L V A + ALD L S FD MD+QMP MDG+ AT IR++
Sbjct: 880 NQELASDLLTDVKINVTVANHGQEALDLLNSSQAFDCVLMDVQMPIMDGYTATHEIRKLP 939
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+N LPI+AMTA+ + D L GM+ +++KP + +
Sbjct: 940 RFSN--------------------LPIIAMTANAMKEDLDAALDSGMNAHLTKPIQVAEM 979
Query: 991 YRELAKFFKS 1000
Y+ LA + K+
Sbjct: 980 YKTLAHWMKT 989
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 107/168 (63%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+V+ + ++ + AE A+ KS FL+ +SHEIRTPMN ILGM L L +L+ QR+Y
Sbjct: 448 QVDQQTNDIEHARQEAELANKMKSDFLSNMSHEIRTPMNAILGMSHLALQGELNRKQRNY 507
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ ++L+ +IN++LD +KIEA K+ELE FNL +L + +L S K+ ++ +EL
Sbjct: 508 VEKVHRSAESLLGIINDILDFSKIEAGKMELEQTDFNLEDVLIHLSNLLSLKAEDQELEL 567
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+++ VP ++GDP R QI+TNL N++KFTE G + + + +R
Sbjct: 568 LFDIAEDVPLTLIGDPIRLGQILTNLGNNALKFTEEGEVVIHAKVLKR 615
>gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1511
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 137/419 (32%), Positives = 216/419 (51%), Gaps = 55/419 (13%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ ++A +GG + L V DTGIG+ R+F F QAD+ST+R +GGTG+GL+ISK
Sbjct: 921 VRLIAEDGG--EAVLRFEVRDTGIGLTQEQIARLFQSFSQADASTTRRFGGTGLGLAISK 978
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
L ELMRG++ S P GSTF FTA K + K+ + P +G + +VVD
Sbjct: 979 RLAELMRGEVGVDSTPGAGSTFWFTARLRKSR-------KRHRVLLPDPDLRGRRVLVVD 1031
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISG 768
+ V L + V+ ++S ++A S L ++ K QP +++L+ D + G
Sbjct: 1032 DNESARTVLTDMLAAMSFSVEAAASGQEALSV----LEAARGKNQPFEVVLL--DWQMPG 1085
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDK-AKAGGFADTVIMKPLRASMIA 827
D A+ + K + P +++ T ++E + A+ GGF + V++KP+ S++
Sbjct: 1086 MDGLETAERIRAKFDAP----PPHLVMVTAFGREEVLRGAEDGGF-EAVLLKPVTPSLLF 1140
Query: 828 ACLQQVLST--ENKRQAGRGVPN---GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
L + L E +RQA P+ G + H G R +LVV+DN VN+ VA L +
Sbjct: 1141 DTLMRALGGFHEERRQA----PDAQAGQASHPGQGR---LLVVEDNEVNQQVARELLTQA 1193
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G TV+ A + + AL+ +Q +D FMD+QMP MDG AT IR++ A
Sbjct: 1194 GYTVDVAENGEVALEMVQR-TPYDLVFMDMQMPVMDGLAATIAIRKLPGFA--------- 1243
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LPI+AMTA+ + ++CL GM+ +V+KP + + L+ L + K
Sbjct: 1244 -----------ALPIVAMTANAMRQDREKCLAAGMNDFVAKPIDPQALFAVLTAWIAPK 1291
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMN I+G+ L L T+L+ QRDY Q + L+ +IN++LD +
Sbjct: 781 KSDFLANMSHEIRTPMNAIVGLSHLALTTELTPRQRDYMGKIQQASQHLLGIINDILDFS 840
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KL +E F+L A+L++V +L EK+ KG+EL V+ VP+ ++GDP R QI
Sbjct: 841 KIEAGKLSIERTDFDLSAVLENVAALIREKAEAKGLELLFDVAADVPQDLVGDPLRLGQI 900
Query: 502 ITNLVGNSVKFTERGHIFVKVHL 524
+ N N+VKFTE G + ++V L
Sbjct: 901 LVNYANNAVKFTEAGEVGIRVRL 923
>gi|445497335|ref|ZP_21464190.1| hybrid signal transduction histidine kinase J [Janthinobacterium
sp. HH01]
gi|444787330|gb|ELX08878.1| hybrid signal transduction histidine kinase J [Janthinobacterium
sp. HH01]
Length = 1203
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 212/437 (48%), Gaps = 48/437 (10%)
Query: 129 PLLSGVAYAPRVVDAQREQFERQ---HGMTITTMKSEPSPIRDEYAPVMFYQEPMS---- 181
P + G+ YAP V A R+ Q G + S P E + V+ Y EP
Sbjct: 404 PGVLGLGYAPLVPAAGRDALTAQVRGQGHPDFRIWSRPGESLGEMSTVVLYLEPFQGQNL 463
Query: 182 HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLL----GSHHLGVVLTFPVYKSKLPPR 237
DMMS R +L A TG+ VL+ L+ + G ++ FP+Y+ P
Sbjct: 464 RAFGYDMMSDPIRRAALLEAARTGEPVLSARVVLVQNAGNAGQPGFLMYFPIYRKSAAPG 523
Query: 238 S--TVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQN 295
T +R+ A GY P + ++ LLG +QAI + ++D + + +Y
Sbjct: 524 VVLTSAQRMAALQGYSYSPIRADDMMAGLLGP--ADQAIQLEIFDGKDTTPDARLYASSR 581
Query: 296 QDGDMSLLHESELDFGDSFRKHKMICRYHQKASTPWTALTT---------AFFLFVIGLL 346
+ D SL + + + + + H + + +T+L + + + G +
Sbjct: 582 RSDDDSL------QYPNPYLRTAPLVLLHHRWTLRFTSLPAFENSIDRQKSHIVLLAGAI 635
Query: 347 VGYILYGAAIHIVKVEDDFHKMQELKVRA---------------EAADVAKSQFLATVSH 391
+ + +G + + + E K A EAA AKS+F+A +SH
Sbjct: 636 ISLLFFGVVRALTARQAYAAALAEEKTAALRESESSLIVARDLAEAASRAKSEFVANMSH 695
Query: 392 EIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451
EIRTP+N +LGM LL +T LS Q+ Y + + G +L++++N+VLD +KIEA ++EL
Sbjct: 696 EIRTPLNAVLGMTHLLNNTSLSPDQQKYLKMIRSSGNSLLSILNDVLDFSKIEAGRMELA 755
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
F L+A+L+ + ++ + S K +ELA+ V VP+ +LGD R +QI+ NLVGN++K
Sbjct: 756 PAPFQLQAVLEAIATIMTVNSGEKDLELAIGVEADVPQSLLGDGHRLQQILINLVGNAIK 815
Query: 512 FTERGHIFVKVHLAERT 528
FTE+G + V L ERT
Sbjct: 816 FTEKGSVSV---LVERT 829
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 195/402 (48%), Gaps = 57/402 (14%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TL V D+GIGIP ++F PF QAD+S +R +GGTG+GL IS+ + LM G I
Sbjct: 839 TLRFTVRDSGIGIPPDQLAQLFAPFSQADASMTRRFGGTGLGLVISRRIAALMGGAIEVQ 898
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKA----VVVDEKPVRAAVT 718
S GS F+ T + E PP L A +VVD+ P+ A
Sbjct: 899 STSGAGSAFTLTVPLQRTDE--------------PPPQGALLAPQHLLVVDDDPLGAD-- 942
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDS--GFNA 775
+L R + SS + A L S+ ++ D +LV+ D ++G D+ A
Sbjct: 943 --YLCRTIVARGWSSDRAGSGEQALALLRSAATRY--DAVLVDWDMPGMNGLDTMQAIRA 998
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
+ D P +IL+ + + + + A+ V++KP+ + + LQ L+
Sbjct: 999 AMPD--------NCPAVILMVSAFGQGKLLHTQGAEAANAVLLKPVTMARLNETLQLALN 1050
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
+ + + + G +IL+V+DN +N++VA L GA+++ + +AA
Sbjct: 1051 KAPVVASAGAGADAGAPAGVRIDGVRILLVEDNPINQLVAQSMLSHAGASIDSVDNGRAA 1110
Query: 896 LDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
LD L++ H +D MD+QMPEMDGFEAT RIR G K L
Sbjct: 1111 LDLLRTDAHRYDLVLMDVQMPEMDGFEATTRIR------------------GELK---LE 1149
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
LP+LAMTA V+ + ++C+ GM+ +++KP + E + R +A+
Sbjct: 1150 LPVLAMTAGVMLSEREQCIASGMNDFIAKPIDVEQMLRAIAR 1191
>gi|398997231|ref|ZP_10700060.1| PAS domain S-box [Pseudomonas sp. GM21]
gi|398124448|gb|EJM13958.1| PAS domain S-box [Pseudomonas sp. GM21]
Length = 1328
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 136/435 (31%), Positives = 209/435 (48%), Gaps = 45/435 (10%)
Query: 579 DAEGFQSNASIINMMASNGGS-EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F I+ + G + E+ L V D+GIG+ R+F PF QADSST+R
Sbjct: 723 NATKFTEQGEIVLGVELRGAAGEEAHLHFWVRDSGIGMSTEQCSRLFQPFSQADSSTTRK 782
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
YGGTG+GL+IS+ LVELM G I S P GSTF F G V D++ +
Sbjct: 783 YGGTGLGLAISRHLVELMGGSIWVESEPGHGSTFHFEVSLG-----VQRDVQLRRMATAD 837
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
F G + +VVD+ + G+ V ++ S A L +E K QP D
Sbjct: 838 ELF-GSRVLVVDDNASAREILSGMTRSFGVEVDVAQS----GPAALTLLLEAEAKAQPYD 892
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDEC--DKAKAGGFAD 814
++L+ D + G D + + + + P +I++ T ++E + ++ G
Sbjct: 893 LVLM--DWRMPGMD---GVETVRQMQAAKLAQTPSVIMV-TAFGREEAREEASRQGIQLP 946
Query: 815 TVIMKPLRASMIAACLQQVLS---TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN 871
V+ KP+ S + L +VL + R + R + S+ LRG ++L+V+DN +N
Sbjct: 947 VVLTKPVTPSTLLEALGRVLGKIPQTDTRASERLDHSASTM--ASLRGARLLLVEDNELN 1004
Query: 872 RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931
R +A L+ G + A + ALD+L+ D MD QMP MDG+ ATR+IR+
Sbjct: 1005 RELACELLESAGIELCLAVNGAEALDQLERDADLDGVLMDCQMPVMDGYTATRKIREQSR 1064
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
AN LP++AMTAD + + L CGM+ ++SKP E+++
Sbjct: 1065 WAN--------------------LPVIAMTADAMAGDRERALACGMNDHISKPLNVEDMF 1104
Query: 992 RELAKFFKSKPLSGA 1006
LAK+ +P GA
Sbjct: 1105 ATLAKWIHPRPGRGA 1119
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 103/158 (65%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q + AE A AKS FLAT+SHEIRTPMN I+GM L L T+L QR+Y +
Sbjct: 582 EVQRAREAAEEATRAKSNFLATMSHEIRTPMNAIIGMSHLALRTELDHRQRNYIEKVHRS 641
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+ L+A+IN++LD ++IEA K+ LE + F+L +LD ++ K+ +KG+EL ++ +
Sbjct: 642 AEYLLAIINDILDFSRIEAGKMHLEHIPFHLENVLDGFANMIGLKAEDKGLELLFNIAAE 701
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+P ++GDP R QI+ NL N+ KFTE+G I + V L
Sbjct: 702 LPTALIGDPLRLGQILVNLGNNATKFTEQGEIVLGVEL 739
>gi|119718530|ref|YP_925495.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
gi|119539191|gb|ABL83808.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
Length = 1090
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 196/403 (48%), Gaps = 46/403 (11%)
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
G +V L V V DTG+GI ++ER+F F QAD ST+R +GGTG+GL+IS+ L +
Sbjct: 589 GPGHEVVLQVDVADTGVGIEPHSRERLFDAFTQADPSTTRRHGGTGLGLAISRQLAIALG 648
Query: 657 GQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
G+I S P GSTFSFTA FG+ + ++ G +A+V+D+
Sbjct: 649 GEIWVESEPGRGSTFSFTARFGRGSGATGASREHARH------LAGRRALVIDDNETNRF 702
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ + L + + +A +T + S D + D+ L+ D + G D A+
Sbjct: 703 ILEEQLGAWRMRPVAVACATEAIATLREAARSG-DPY--DVALL--DLMMPGTDGLMLAR 757
Query: 777 LLDWKPNGHVFKLPKLILLATN--ISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
+ P+ P ++LL ++ ++++E + G + KP+R + LQ +L
Sbjct: 758 QIRADPS---VGAPAMLLLTSDQTVTREEVE----GAGVHASLSKPVRHGELRGALQALL 810
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
R A P G G ++LVV+DN VN++VAAG L+ G TV+ +
Sbjct: 811 GDATTRPAP-ASPAGPGL------GIRVLVVEDNQVNQLVAAGLLENLGCTVDVVSDGVE 863
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A+ L PH + A MD +MP +DGF+ATR++R+ E
Sbjct: 864 AVRLLTRPHEYAAALMDCRMPRLDGFDATRQVRRHEPVGR-------------------R 904
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+PI+A+TA + + CL GMD Y++KP + L R + ++
Sbjct: 905 VPIIALTASAMEGERERCLDAGMDDYLTKPVDTAELERVIREW 947
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 108/167 (64%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+ + E ++ E + A A KS+FLAT+SHEIRTPMNG++G+ LLL ++L QR
Sbjct: 406 VAERERSAAQLAEARDDAMEASRLKSEFLATMSHEIRTPMNGVIGLTDLLLLSELDDHQR 465
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
A+ Q G L+ +IN++LD +KIE+ KLELE+ F++RA+ D V S+ S + KG+
Sbjct: 466 RLAENLQGAGLTLLGIINDILDLSKIESGKLELESADFDVRAVFDQVASVLSGPAHAKGL 525
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
EL V +VP + GD RF QI+TNL N+VKFT++G + V+ +
Sbjct: 526 ELVVACHPEVPVQLRGDAVRFGQILTNLGSNAVKFTDQGEVVVQARV 572
>gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1]
gi|291076258|gb|EFE13622.1| response regulator receiver domain protein [Clostridium sp. M62/1]
Length = 889
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 181/648 (27%), Positives = 291/648 (44%), Gaps = 133/648 (20%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+AE A+ AKS+FL+ +SHEIRTPMNGI+ G +IA+
Sbjct: 352 QAEKANRAKSEFLSRMSHEIRTPMNGII-------------------------GMGMIAM 386
Query: 434 INEVLDRAKIE--ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
N + D +++E RK+ L + +L +++DVL + +S I+ VF +F
Sbjct: 387 QN-LGDSSRVEDCIRKINLSSR--HLLTLINDVLDMSKIESGRIEIKRDVF------DFR 437
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L F + ++N++ + ++G F + L D ++E + R
Sbjct: 438 L-----FLESVSNVISGQAR--DKGLNFDVIFLG-------DMEEELFGDA------LRV 477
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
N LS N+ KF + + ++ + + S V L V DT
Sbjct: 478 NQILMNLLS--------NAL-KFTP-------EGGSIVLRIAKMDEDSTTVWLKFEVSDT 521
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G GI E++FMPF Q S YGGTG+GLSIS+ ELM G+++ S+ GSTF
Sbjct: 522 GCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVGKGSTF 581
Query: 672 SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM 731
+ T FG+ ++ + ++ + D F L+ + VD+ P +T L + K
Sbjct: 582 TLTMPFGRVEKRESRESRERRETD----FSHLRVLAVDDDP--DCLTHIKLLLKKLGAKA 635
Query: 732 SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNG------ 784
++I + K L S +GED ++ L DWK P+G
Sbjct: 636 DTAISCEEAVEKARLAYS-----------------AGED--YDVCLADWKMPSGDGVETI 676
Query: 785 -HVFKLPKLIL---LATNISKDECDKAKAGGFADTVIMKPLRASMIAACL-----QQVLS 835
+ KLP + L T DE + A V+ KPL S ++A L ++
Sbjct: 677 RRLRKLPGRKIAAALVTAYDTDEIRRDAELAGAACVVEKPLFESTLSALLTKLLKEKQQE 736
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
+ ++Q + +F +G G + LVV+DN +NR +A FGA VE A + K A
Sbjct: 737 KQEEKQEEKTAQKSQNFPEGNFGGLRFLVVEDNDLNREIAVTLFSSFGAEVETAVNGKEA 796
Query: 896 LDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
++ ++ P FD MD+QMP MDG+EATR IR ++ + D
Sbjct: 797 VEAFETSEPGFFDLILMDVQMPVMDGYEATRIIRSLD------------------REDGR 838
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+PILAMTA+ + + CGMDG++SKP + + + ++ + K +
Sbjct: 839 EIPILAMTANAFSEDKAKSMACGMDGHISKPIDLKEVVEKIERVLKKR 886
>gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1333
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 178/645 (27%), Positives = 284/645 (44%), Gaps = 125/645 (19%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K+ D ++ +AE+A+ AKS+FLA +SHEIRTPM I+G+ LL ++ L+ Q+D
Sbjct: 565 KLADANAELAARTRQAESANAAKSEFLANMSHEIRTPMAAIVGLSHLLENSRLNPDQQDL 624
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ + K +L A++DDVL L ++ I+
Sbjct: 625 LRKMRGASK---------------------------SLMAVIDDVLDLSKIEAGELRIDR 657
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+ F + ++ +L R ++ A D TL
Sbjct: 658 SAF--------------SLQALLDDL---------------------RGLMALSAHDRTL 682
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI-DAEGFQSNASI---INMMAS 595
E V R G + L G D +L+ +A F + + + ++A
Sbjct: 683 ------ELVMRCDAGLPDQLDG----DLMRLRQVLNNLLSNALKFTTVGEVLLQVALVAR 732
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
G + L V D+GIGI + Q R+F PF Q D+ST+R YGGTG+GL IS+ LV LM
Sbjct: 733 QSGR--LRLRFTVRDSGIGISAAEQARLFRPFAQVDASTTRRYGGTGLGLVISRRLVRLM 790
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG--LKAVVVDEKPV 713
G IS S P GS FSF F D+ ++ +P G G + +VVD+ +
Sbjct: 791 GGDISLRSAPGKGSEFSFDLSF---------DVDEAS---VPAGAGGAPIHVLVVDDHAL 838
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED--- 770
+ AV LG V+ +S DA+ ++ F ++ D + G D
Sbjct: 839 QRAVLSEAAASLGWRVEAVAS-SDAAIERTVAQAAAGAPFDALVL----DWQMPGRDGLA 893
Query: 771 --SGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
+ + +L + +G ++P L++ +D + A D V+ KP+ AS +A+
Sbjct: 894 TLALLHRRLAECAADGVFAEMPPLVMTVAPSEEDALRREPAAASIDAVLCKPIMASTLAS 953
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
+ + + A P + + L +LVV+DN +N +A L++ GA V
Sbjct: 954 AVAAARARQRSGTAWPADPAAQAAQR--LPHVCVLVVEDNSINLEMARLILEREGALVNA 1011
Query: 889 AASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A + + ALD LQ+ P FD MD+QMP MDGFEA R +R+
Sbjct: 1012 AGNGREALDLLQARPDAFDIVLMDLQMPVMDGFEAVRLMRE------------------- 1052
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
+ D +P++A+TA + + + GM ++SKPFE E+L R
Sbjct: 1053 -RADLQAVPVIALTAGALPSDRERAHAVGMSDFISKPFEVEHLVR 1096
>gi|320170053|gb|EFW46952.1| GacS [Capsaspora owczarzaki ATCC 30864]
Length = 2431
Score = 176 bits (445), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 182/322 (56%), Gaps = 27/322 (8%)
Query: 356 IHIVKVEDDFHKMQELK-VR-AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS 413
I I K +D+ ++ + VR AEA+ AKS FLA+VSHEIRTP I+G+ LLL ++L+
Sbjct: 1510 IAIAKAQDEEERISRAEAVRTAEASSRAKSVFLASVSHEIRTPATSIVGLAELLLLSELN 1569
Query: 414 STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSR 473
S QR+ T + L +I ++LD ++IEA KL L N ++D+VL FSEK++
Sbjct: 1570 SEQREILSTLHRASEVLSVIIEDILDISRIEAGKLTLSNSWTNAYDLVDNVLKFFSEKAQ 1629
Query: 474 NKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL-AERTMVKT 532
+K I L S +P V+ DP R RQ++ N+VGN++KFTE G + VKV L A++ V+
Sbjct: 1630 SKNITLIADSSPYLPPAVMCDPDRLRQVLLNIVGNAIKFTETGEVVVKVWLVADKQAVE- 1688
Query: 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINM 592
+D+ N G G GT A ++S+ H D+E +S A
Sbjct: 1689 --RDDESSNAGPPPGPTSDGTS--------PRAPRKSSFRLLGH-NDSEISRSQA----- 1732
Query: 593 MASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV 652
+ L V DTGIG+ SA +R+F F Q D+S SR + G G+GL+ISK LV
Sbjct: 1733 -------QQHKLFFKVADTGIGMEKSAIQRIFDAFSQLDTSVSRRHDGLGLGLAISKQLV 1785
Query: 653 ELMRGQISFVSRPQVGSTFSFT 674
EL G +S S+ +GSTF+FT
Sbjct: 1786 ELAGGALSVSSQLGIGSTFTFT 1807
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 40/145 (27%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSP------------------ 902
+L+V+DN N+ V L+K G +V A++ AL L Q P
Sbjct: 2261 VLLVEDNVTNQRVFQKQLEKLGCSVVIASNGLQALIVLKQGPVVPGTSATDTVVTADQTG 2320
Query: 903 ---HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
FD FMD MP +DGF AT+ IR ++ N +S +PI+A
Sbjct: 2321 AARRPFDMIFMDCNMPVLDGFSATKIIR--------EVFNPPTS----------EIPIIA 2362
Query: 960 MTADVIHATFDECLKCGMDGYVSKP 984
+TA+ + ECL GM +++KP
Sbjct: 2363 LTANAMLTDRAECLAAGMTDFLAKP 2387
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD-----LSST 415
V +D ++++L A + K+ FL VSHE++TP+ ILG L +L D +
Sbjct: 559 VSEDKERLEKLV----AVNQLKADFLCNVSHELQTPLQLILGPLTDVLAEDDAAVAAPPS 614
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLE-LEAVL----------------FNLR 458
+ + G L + VLD A++L L A L ++
Sbjct: 615 VAASSSSVAATGPVLTPKVRGVLDSVHRNAKRLHRLVATLLDFSRMKLGHQSKPLELDIA 674
Query: 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
A+ + S F ++ + LAV + P V D + +++ NL+ N+ KFT G +
Sbjct: 675 ALTQSLASRFESTAQKLSVGLAVD-TPPTPLMVTIDASYWEKVLLNLLSNAFKFTSTGKV 733
Query: 519 FVKV 522
+ V
Sbjct: 734 TIGV 737
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 571 WDK--FKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
W+K L +A F S + + N ++ V + V DTGIGIP ++F F
Sbjct: 713 WEKVLLNLLSNAFKFTSTGKVTIGVRPNKANDGV--VATVRDTGIGIPSEYLPQIFERFF 770
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+ +R G+GIGL++ K L+ M G IS S G+ F+
Sbjct: 771 SFRDARARSTEGSGIGLALVKELLFAMGGTISVESAVGFGTCFT 814
>gi|398951625|ref|ZP_10674198.1| PAS domain S-box [Pseudomonas sp. GM33]
gi|398156269|gb|EJM44692.1| PAS domain S-box [Pseudomonas sp. GM33]
Length = 1470
Score = 176 bits (445), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 179/655 (27%), Positives = 279/655 (42%), Gaps = 134/655 (20%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q + AE A AKS+FLA +SHEIRTPMN I
Sbjct: 719 QVQHAREIAEEATRAKSEFLANMSHEIRTPMNA-------------------------II 753
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G + +AL ++ +R + K+ A NL I++D+L ++ +EL F +
Sbjct: 754 GMSHLALRTDLDNRQRNYIVKVHRSAE--NLLGIINDILDFSKIEAGRMDLELIPFRLED 811
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
V E TN+VG ++ ++G + T A T L G
Sbjct: 812 VLEN-----------FTNVVG--LRAEDKGLEL---------LYSTVADLPTALIGDP-- 847
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE-DVTLM 605
R G L+ L G N A F I+ + G E V L
Sbjct: 848 --LRLG----QVLANL----GNN----------ATKFTEQGEIVLGIERTGNDEGKVELH 887
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
V DTGIG+ +R+F F+QADSST+R YGGTG+GL+ISK LVE+M G+I S
Sbjct: 888 FWVRDTGIGMSEEQCQRIFQSFIQADSSTTRKYGGTGLGLAISKRLVEMMGGRIWVESTL 947
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GSTF F G + ++ G++ +VVD+ + +
Sbjct: 948 GSGSTFHFCVSLG------LQAAATARRMFTADELLGIRVLVVDDNASAREILSGMAHSF 1001
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG- 784
G+ V ++ S A L +E P F+ L+DW+ G
Sbjct: 1002 GVEVDVAES----GRMALRMLAQAEKDSLP-----------------FDLVLMDWRMPGM 1040
Query: 785 ------------HVFKLPKLILLATNISKDECDKAKAGGFADTVIM-KPLRASMIAACLQ 831
++ + P +I++ ++ ++A+ V++ KP+ S + +
Sbjct: 1041 DGVETVRQMRCANLARTPSVIMVTALDREELLEQARHQDVHLPVVLTKPVTPSTLLEAIG 1100
Query: 832 QVLSTENKRQAGRGVPN-GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
V + N S+ + L+G ++L+V+DN +NR +A L++ G +E A
Sbjct: 1101 TVFGKAPQTVTRAHERNEQSADNMARLKGARLLLVEDNELNRELACDLLQEAGIELELAF 1160
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ ALD+L FD MD QMP MDG+ ATRRIRQ + A
Sbjct: 1161 DGQQALDRLARDSDFDGVLMDCQMPVMDGYTATRRIRQQSNFAA---------------- 1204
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
LPI+AMTAD + + L CGM+ ++SKP + ++++ LA++ K +P G
Sbjct: 1205 ----LPIIAMTADAMAGDRERALACGMNDHLSKPLDVDSMFATLARWIKPRPGRG 1255
>gi|46201757|ref|ZP_00054434.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
MS-1]
Length = 514
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 194/397 (48%), Gaps = 46/397 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGIP A R+F FMQ D+ST+R YGGTG+GL+ISK L E+M G I S P V
Sbjct: 36 VRDTGIGIPEDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGV 95
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F+F+ F V E S+ P +G + +VVD+ P+ V + L GI
Sbjct: 96 GSLFTFSLPF-----EVVEGAPASR-----PCLEGRRVLVVDDSPINRDVLERQLRGFGI 145
Query: 728 MVKMSSSIKDASSTAKN--GLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
+ S DA+S + ++++ ++ IL + ISG D A L+ +P
Sbjct: 146 ---HAVSCPDATSALEEIRRAAATQEPWEA-AILDARMPGISGMDL---AGLIRNEPALG 198
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
KL ++A++ D + AD I KPLR I L +VL +
Sbjct: 199 GLKL----VIASSQGLAAGDSPAS---ADAFIHKPLRRQTILGILARVLGIAHDAALPDS 251
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+ + Q +ILV +DN VN+ VA G L+K G +V+ AA A++ +++ +
Sbjct: 252 AESEPAAPQQTGVRLRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRA-RPY 310
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MD+QMPEMDG +AT IR + + +PI+AMTA+ +
Sbjct: 311 DLVLMDVQMPEMDGLQATNAIRALSGPPS-------------------RIPIVAMTANAM 351
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
CL GMD Y+SKP + + L LA + + P
Sbjct: 352 RGDDKMCLDAGMDSYISKPIDRQKLMDVLAHYSGTLP 388
>gi|430744391|ref|YP_007203520.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430016111|gb|AGA27825.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1159
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/403 (31%), Positives = 211/403 (52%), Gaps = 40/403 (9%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E L V DTGIG+ ++F PF+QADSST+R +GGTG+GLSISK LVE+M GQI
Sbjct: 556 EQAVLAFSVRDTGIGMTAEQAGKLFQPFVQADSSTTRKFGGTGLGLSISKQLVEIMGGQI 615
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S S P GS F FTA FG ++ + + L +GL+ +VVD+ +
Sbjct: 616 SVESEPGKGSVFDFTAAFGLARK------SRIRFGRLVGELQGLRVLVVDDSGTSREILT 669
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLL 778
L + V ++++ + A L + D+ +P D++L+ D + G D A+ +
Sbjct: 670 DALESMSFEVGVATT----GAEALVALDRAADEGRPFDLVLM--DYKMPGMDGIEAARRI 723
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
K + + + P ++++ ++ +A+ G + ++KP+ S++ + +V +
Sbjct: 724 --KKSSRLHQAPTVVMVTAYGREEIMSRAERVGV-EGFLIKPVGQSVLLNTIMEVFG-HS 779
Query: 839 KRQAGR--GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
K Q R VP G +RG ++LV +DN +N+ VA L+ G V+ AA+ + A+
Sbjct: 780 KHQDFRPLTVPAMQLEAMGSIRGSRVLVAEDNEINQQVAREILESAGLVVDIAANGREAV 839
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ +++ + +DA MDIQMPE+DG +AT +R DG + LP
Sbjct: 840 ELVRA-NPYDAVLMDIQMPELDGLQATVELRG----------------DGRYR----DLP 878
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
I+AMTA + ++ LK GMD +V+KP + + L+ L ++ K
Sbjct: 879 IIAMTAHAMAGDREQSLKAGMDDHVTKPIDPDVLFAVLLRWIK 921
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 109/172 (63%)
Query: 357 HIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ 416
H ++E+ ++++ + A A AK FLA +SHEIRTPMN I+GM L L TDL+ Q
Sbjct: 383 HKKELENLIVELEKTREEAVEASRAKGDFLANMSHEIRTPMNAIIGMSHLALQTDLAPKQ 442
Query: 417 RDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKG 476
RDY + KAL+ +IN++LD +KIEA +L++EA FNL +LD V +L + K+ KG
Sbjct: 443 RDYLKKIDGSAKALLRIINDILDFSKIEAGRLDMEAAEFNLEDVLDSVATLITPKAEEKG 502
Query: 477 IELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+E+ +P ++GD R QI+ NL GNSVKFTE+G I + L E+T
Sbjct: 503 LEVLFRTEPGLPLHLVGDSLRLGQILINLAGNSVKFTEQGEIVISTQLVEKT 554
>gi|407716687|ref|YP_006837967.1| diguanylate cyclase [Cycloclasticus sp. P1]
gi|407257023|gb|AFT67464.1| Diguanylate cyclase [Cycloclasticus sp. P1]
Length = 1487
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 186/651 (28%), Positives = 286/651 (43%), Gaps = 139/651 (21%)
Query: 353 GAAIHIVKVEDDFHKM--------QEL----KVRAEAADVAKSQFLATVSHEIRTPMNGI 400
G+ I+++E F M QEL + EAA V KS+F A VSHE+RTP+NGI
Sbjct: 229 GSTEDIMRMEQAFTDMMHILENREQELITTRDIAIEAAKV-KSEFAANVSHELRTPLNGI 287
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
GML LL D DL+ Q++Y + A +L++LI++VLD +K + ++L FNLR
Sbjct: 288 SGMLELLSDMDLNVQQKEYLKVASSSANSLLSLIDDVLDFSKYNQQDVDLHEESFNLRNT 347
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
L++ ++L S ++++K I +A F+ VP ++ D R +QII NL+GN++KFT G + +
Sbjct: 348 LENSITLLSAQTQHKNISIAYFLDADVPLHLIADELRLQQIIQNLLGNAIKFTPAGEVSI 407
Query: 521 KVHLAERTMVKTDAKDE---TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHL 577
+ T A +E TLL + GV Q + AD + +
Sbjct: 408 S--------ISTSALNENNLTLLFEVKDTGVGIPQEVQNKIFTAFSQADNSTTREY---- 455
Query: 578 IDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
GG TG+G+ +S Q
Sbjct: 456 -------------------GG------------TGLGLAISRQ----------------- 467
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG-KCKEYVFEDIKQSKSEDL 696
LV + G++ S+ GSTF FTA F + FE S ++
Sbjct: 468 -------------LVTIFGGEMGVKSKVGKGSTFWFTANFTVDMQAEAFE----LSSAEI 510
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP- 755
P + V D+ R V Q+ + + + D TA L E +P
Sbjct: 511 SPTQPNVLTVSDDDFSHRFIVQQFQASPFH-----ADHVTDG-MTAIKKLRQHETLSKPY 564
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADT 815
D IL++ + + L+ H K+I+L N S + F
Sbjct: 565 DYILID-----NLRSNISQTALIRMINADHTLANTKIIVLIANQSSQLNATKELNVFGH- 618
Query: 816 VIMKPLRASMIAACLQQVLSTE----NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN 871
I KP++ S + L+ + ++ ++QA + SF KKILVV+DN N
Sbjct: 619 -ITKPIKQSDLLLHLRSTVESKPTLLPEQQALKEPLPDYSF-------KKILVVEDNKAN 670
Query: 872 RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931
++VA L++F V A AL+ L S FD MD QMPEMDG+EAT +IR++E
Sbjct: 671 QLVAKAMLERFHCNVTLANDGLEALE-LFSSQSFDLILMDCQMPEMDGYEATFQIRELE- 728
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
+VD H PI+A+TA+ +A ++C+ GMD ++S
Sbjct: 729 -----------TVDK-------HTPIVALTANKQNADREQCIAAGMDDFMS 761
>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
Length = 967
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 199/385 (51%), Gaps = 33/385 (8%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V + DTGIGI +R+F PF QAD ST+R YGGTG+GL+ISK +V LM G +
Sbjct: 455 VKLHVLIRDTGIGISQQDLQRLFSPFSQADGSTTRKYGGTGLGLAISKEIVALMGGDLHC 514
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P GSTFSFT F E ++++S KG + +V+D+ + +
Sbjct: 515 ESEPGKGSTFSFTVDFAASLE-----TEKNRSRLNTANLKGHRVLVIDDNLTNREILKRQ 569
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ G+ K S D + L ++ K +P D++L++KD + G D AQ +
Sbjct: 570 TSSWGMKPKSS----DCGAKGIEELHLAQQKGEPFDLVLLDKD--MPGMDGLEVAQQI-- 621
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
K + + +LI+L + + ++ +AK G + + KP+ + + A + Q++ K
Sbjct: 622 KADSAIAD-TRLIMLTSVGAGNDAAQAKRNGIS-AYLNKPVPQADLHAAVIQIIGDHPKN 679
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
++ + + L +LV +DN N+ VAA L+ FG V+ ++ + A+D +
Sbjct: 680 RSDHMIDSTGIDQDKQLFNIHVLVAEDNLTNQNVAAAMLRLFGCRVDIVSNGREAVDAI- 738
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
S +D FMD QMP +DG++AT IRQ E + NG E ++PI+A+
Sbjct: 739 SKKSYDLVFMDCQMPVLDGYQATAAIRQFEKE------NGV----------EKNMPIIAL 782
Query: 961 TADVIHATFDECLKCGMDGYVSKPF 985
TA+ + +CL GMD Y+SKPF
Sbjct: 783 TANALEGDRKKCLTAGMDDYLSKPF 807
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 118/155 (76%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K AE A AKSQFLA +SHEIRTPMNG+LGM LL++TDL+ QR +++T Q G
Sbjct: 291 LEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDLTEEQRRFSKTIQSSG 350
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+L+A+IN++LD +KIEA KLELE + FNL+ ++DDV+ + + ++ K +ELAV + +
Sbjct: 351 SSLLAIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLIPPET 410
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
F+ GDP RFRQ++TNLVGN++KFT++G + V+V
Sbjct: 411 CIFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQV 445
>gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1666
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 203/411 (49%), Gaps = 66/411 (16%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V L V DTGIG+ + R+F F QAD+ST+R +GGTG+GL+ISK L ELM G++
Sbjct: 1103 EVMLRFEVRDTGIGLTEEQKARLFQSFQQADTSTTRKFGGTGLGLAISKKLAELMGGEVG 1162
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQ 719
S P GSTF FTA GK K ++ LP P G + +VVD+
Sbjct: 1163 VDSVPGEGSTFWFTARMGKGK---------PRAPLLPEPELVGRRMLVVDDNE------- 1206
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
N ++V M SS+ + + G ++ D + ++ D + LD
Sbjct: 1207 ---NARAVLVDMLSSMSFEVDSVEGG-AAAIDAIREAML-----------DQPYEVVFLD 1251
Query: 780 WKPNG----------HVFKL--PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
W+ G H +L P +++ T ++E K V++KP+ + +
Sbjct: 1252 WQMPGMDGLEVAERIHDIRLPFPPHLIMVTAYGREEIIKGAQAADIGEVLVKPVNPAALF 1311
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
+ +V +++++R G + L+G ++L+V+DN +N+ VA+ L G V+
Sbjct: 1312 DSIMRVFASDDRRSEEDEGTEGGTVDVSGLKGVRVLLVEDNELNQEVASEILGDAGLVVD 1371
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
AA+ + A+DK ++ H +D MD+QMP MDG ATR IR M +
Sbjct: 1372 IAANGQIAVDKAKTGH-YDLILMDMQMPVMDGVTATREIRAMGFQ--------------- 1415
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+AMTA+ + A ++CL+ GM+ +++KP + ++++ + K+
Sbjct: 1416 ------DLPIIAMTANAMQADREKCLEAGMNDHIAKPIDPDSMFATMMKWL 1460
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 110/180 (61%), Gaps = 6/180 (3%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A KS FLA +SHEIRTPMN I+GM L L T+L+ QRDY + Q G+ L+ +I
Sbjct: 947 AEDAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVKKIQQSGQHLLGII 1006
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KLE+E +L +L++V +L S+K+ KG+EL + VP ++GD
Sbjct: 1007 NDILDFSKIEAGKLEVEVTEVHLDKVLENVGNLISDKASAKGLELLFDLGAGVPLDLMGD 1066
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAE----RTMVKTDAKDETLLNGGTEEGVCR 550
R Q++ N N+VKFTE G I V V L E M++ + +D + G TEE R
Sbjct: 1067 SLRLGQVLINYANNAVKFTEEGEIVVAVRLLEDLGAEVMLRFEVRDTGI--GLTEEQKAR 1124
>gi|334129301|ref|ZP_08503106.1| Putative Histidine kinase [Methyloversatilis universalis FAM5]
gi|333445527|gb|EGK73468.1| Putative Histidine kinase [Methyloversatilis universalis FAM5]
Length = 1338
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 171/635 (26%), Positives = 261/635 (41%), Gaps = 139/635 (21%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMN ILGM L L +++ QR+Y + A + L+
Sbjct: 612 KSSFLANMSHEIRTPMNAILGMTHLALRDEMTPRQRNYVEKAHRAARGLL---------- 661
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
AIL+D+L L +S IE F D V +
Sbjct: 662 -----------------AILNDILDLSKIESGRLEIERIDFRLDAVID------------ 692
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
HL + VK + K+ LL E G+ + G L
Sbjct: 693 ---------------------HLVDVIGVKAEEKNLELLFS-AEAGIPTALVGDPVRLGQ 730
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
+ N+ KF + + +I + S S V L V D+GIG+ +
Sbjct: 731 VLINLASNAI-KFTE-------RGDVTIAVALQSRDDST-VELHFTVSDSGIGMDEAQIA 781
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
R+F PF QADSS +R YGGTG+GL+I + LV+LM G+I S P GS F FTA FG
Sbjct: 782 RLFQPFTQADSSITRRYGGTGLGLTICRQLVDLMGGRIWVDSAPGRGSVFHFTARFG--- 838
Query: 682 EYVFEDIKQSKSEDLPP---GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDA 738
++QS + P G + +VVD+ V +G+ ++ S +A
Sbjct: 839 ------LQQSAAPSWPALAGEASGTRVLVVDDHAGAREVLATLCRGMGLDTDVAGSADEA 892
Query: 739 SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKLPKLI---- 793
+E+ + + + + L+DWK P +L + I
Sbjct: 893 ---------------------LER---LEHDGARYGLLLIDWKMPGMDGVQLAEEIRRRW 928
Query: 794 -------LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
+L T + +D+ AG + V+ KP+ S + + Q G
Sbjct: 929 PRRGVRLILVTALGRDDVATQSAGRQFEAVLHKPVTPSSLLDAVSQAYGRRQDSARHPGA 988
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
N + L G ++L+V+DN +N+ +A L++ G V+ A + ALD L FD
Sbjct: 989 DN-GAEAAAGLAGARVLLVEDNELNQELAVDLLERAGIEVKVAGDGRQALDMLAGDSRFD 1047
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
A MD QMP MDG+ ATR +R + LP++AMTA V+
Sbjct: 1048 AVLMDCQMPVMDGYTATRELRALPGLEA--------------------LPVIAMTASVLE 1087
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ CGM+ + KP + ++ LA++ + +
Sbjct: 1088 TDRERMRACGMNDCIPKPLDVPQMFATLARWLQPR 1122
>gi|365097211|ref|ZP_09331456.1| multi-sensor hybrid histidine kinase [Acidovorax sp. NO-1]
gi|363413505|gb|EHL20701.1| multi-sensor hybrid histidine kinase [Acidovorax sp. NO-1]
Length = 1631
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 203/433 (46%), Gaps = 71/433 (16%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ +M S G V L V DTGIG+ R+F F QAD+ST+R YGGTG+GL+I K
Sbjct: 1013 VRLMESEGSR--VLLRFEVRDTGIGLTPEQMGRLFQSFQQADTSTTRRYGGTGLGLAICK 1070
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
L ELM G++ S GSTF T E ++ PP +G + +VVD
Sbjct: 1071 SLAELMGGEVGVESIFGQGSTFWVTV--------PLERGAPARVLLPPPDLRGRRVLVVD 1122
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+ A V L +G V+ + S A + L S + QP
Sbjct: 1123 DNQTAATVLSDMLTSMGFDVEQAHS----GLEALDRLRESMARHQP-------------- 1164
Query: 770 DSGFNAQLLDW--------KPNGHV-----FKLPKLILLATNISKDECDKAKAGGFADTV 816
F LLDW + GH+ ++PK++++ +D A+ G DTV
Sbjct: 1165 ---FGLLLLDWHMPGMDGIQLAGHIKGLGMAQVPKMLMVTAYGREDVMRAARLQGI-DTV 1220
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGL---LRGKKILVVDDNGVNRM 873
++KP+ AS++ L Q L E+ A R V + + L +RG +L+V+DN +N+M
Sbjct: 1221 LIKPVNASLLFDTLMQPL--EHAPAAPRRVVATAPAAEQLPLEIRGASVLLVEDNELNQM 1278
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
VA L+ G V+ A + +AA+D ++ +D MD+QMP MDG ATRR+R A
Sbjct: 1279 VAVELLRDAGFAVDVAENGEAAIDCIER-KAYDVVLMDMQMPVMDGETATRRLRSNPRHA 1337
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
LPI+AMTA+ + A C GM+ +V+KP E L+
Sbjct: 1338 --------------------QLPIVAMTANAMEADRQRCFAAGMNDHVAKPIEPAALWAA 1377
Query: 994 LAKFFKSKPLSGA 1006
L ++ + +P GA
Sbjct: 1378 LGRWIRPRPGLGA 1390
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 106/181 (58%), Gaps = 7/181 (3%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E + + +EL AE + KS FLA +SHEIRTPMN I+GM L L + LS Q DY
Sbjct: 854 RAEQELRRAKEL---AEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLSDRQHDY 910
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q G+ L+ +IN++LD +KIEA KL +E F L +LD V + K+ KG+EL
Sbjct: 911 VSKIQQAGQHLLGVINDILDFSKIEAGKLVVEKHPFALDHMLDSVADVVGYKAGAKGLEL 970
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE----RTMVKTDAK 535
V+ VP ++GD R QI+ N N++KFTERG I + V L E R +++ + +
Sbjct: 971 VCDVAPDVPPNLIGDSLRMGQILINFANNAIKFTERGEISIAVRLMESEGSRVLLRFEVR 1030
Query: 536 D 536
D
Sbjct: 1031 D 1031
>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
Length = 1079
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 208/414 (50%), Gaps = 47/414 (11%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G E V L V DTGIGIP AQ R+F F QADSST+R +GG+G+GL+I+ LV +M G
Sbjct: 553 GDEKVRLRFVVRDTGIGIPPEAQARIFNAFSQADSSTTRRFGGSGLGLAITSQLVGMMGG 612
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
QI+ S+ GSTF+FTA F D + + P + L+ + VD+ A
Sbjct: 613 QINVESQVGQGSTFTFTAAF---------DRQPDRPPITLPELEHLRVLAVDDN----AT 659
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
+ L L +M I D++ A L + QP I LV D + D GF L
Sbjct: 660 NRLILRELFTSWRMEVVIADSAPAALAALDRAGRDGQP-IALVVTDMMMPDVD-GFG--L 715
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
++ + + ++I+L ++ ++ + + G ++ KP++ S + + V+
Sbjct: 716 VERMRASPLLRDTQVIMLTSSNRPEDMARCQQMGIGAHLV-KPIKQSRLMDSIVTVMGRS 774
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
++R R P + + R +IL+ +DN VN+ +A L+ +G TV A + + A++
Sbjct: 775 SRR---REKPVETDVPRQ--RPLRILLAEDNAVNQRLAVVNLESWGHTVTVAHNGREAVE 829
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L + FD MD QMP M GFEAT IR+ E+ GS H+PI
Sbjct: 830 -LFTAQPFDLILMDSQMPRMGGFEATAEIRRREA---------GSGA---------HVPI 870
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK-----FFKSKPLSGA 1006
+AMTA+V+ + +ECL GMDGYV+KP L +E+A S+P+ A
Sbjct: 871 VAMTANVMKGSREECLGAGMDGYVAKPMRRHELIKEIAAVVPGFILGSEPVPAA 924
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 109/163 (66%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K++ + + L V A AA+ AK FLA +SHEIRTPMNGI+GM L L++ ++ Q++Y
Sbjct: 385 KLQAKTAEAEHLAVEATAANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPIQQEY 444
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ + + L+ L+N++LD +KIEA +LELE + F+LR +L D + ++ G+EL
Sbjct: 445 LEMVRSSAETLLELLNDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLEL 504
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
A+ + VP+ + GDP R RQ++ NLVGN++KFTERG + V V
Sbjct: 505 ALQIRPDVPDALTGDPHRLRQVVVNLVGNALKFTERGEVTVLV 547
>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 992
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 199/402 (49%), Gaps = 66/402 (16%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGIP A R+F FMQ D+ST+R YGGTG+GL+ISK L E+M G I S P
Sbjct: 514 VRDTGIGIPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGA 573
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F F+ F+ ++ + + P G + +VVD+ P+ V + L G+
Sbjct: 574 GSLFWFS--------LPFQMVETAPPQR--PDLAGRRILVVDDSPINRDVLERQLRGFGV 623
Query: 728 MVKMSSSIKDA-SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
+V +S DA S+ A+ G ++ I+ + ++G D L+ G +
Sbjct: 624 IV---ASCADAESALAELGRAAATGTPWEAAIIDARMPGVTGSD------LI-----GRI 669
Query: 787 FKLPKLILLATNISKDECDKAKAGGF-ADTVIMKPLRASMIAACLQQVL----------S 835
P L + I+ + + G AD I KPLR I A L +VL S
Sbjct: 670 RAEPVLAPMGLIIASSQGLSPEDGSPKADAFIHKPLRRQTILAVLARVLGLPHDPGLQDS 729
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
E++ +A +P + R +ILV +DN VN+ VA G L+K G +V+ AA A
Sbjct: 730 PESEPEA---IPRPA-------RRLRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEA 779
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
++ ++S +D MD+QMPEMDG +AT IR ++ G A+R +
Sbjct: 780 VEAVRS-RPYDLVLMDVQMPEMDGLQATAAIR---------------ALTGGAER----V 819
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
PI+AMTA+ + CL GMD Y+SKP + L LA++
Sbjct: 820 PIVAMTANAMRGDDRMCLDAGMDRYISKPIDRRKLMEVLAQY 861
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 105/149 (70%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AK+ FLAT+SHEIRTPMNG++GM LLLDT L QR +A T + ++L+ +I
Sbjct: 351 AERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAESLLTVI 410
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +K+EA KL+LE+ F L +++ ++ + + ++ KGIE+A V +P +V GD
Sbjct: 411 NDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLPAWVRGD 470
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVH 523
PGR RQI+ NL GN++KFT G I ++V
Sbjct: 471 PGRLRQILMNLAGNAIKFTSHGGISIEVR 499
>gi|34393505|dbj|BAC83066.1| histidine kinase 1-like protein [Oryza sativa Japonica Group]
gi|125600831|gb|EAZ40407.1| hypothetical protein OsJ_24858 [Oryza sativa Japonica Group]
Length = 161
Score = 174 bits (441), Expect = 2e-40, Method: Composition-based stats.
Identities = 83/140 (59%), Positives = 100/140 (71%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
A+V W++ A + ++ + +E L +C++RARMLQDQF V+VNHVHAL IL
Sbjct: 8 AVVAWVLASAALWAGLHWRFRRPALHKAEEALVCICEERARMLQDQFAVSVNHVHALAIL 67
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM 159
V TFHY K+P ALDQDTFA Y RT+FERPLLSGVAYA RVV A RE FERQ G I TM
Sbjct: 68 VVTFHYDKHPPALDQDTFAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKTM 127
Query: 160 KSEPSPIRDEYAPVMFYQEP 179
K EPSP +DEYAPV++ Q P
Sbjct: 128 KHEPSPAQDEYAPVIYSQPP 147
>gi|333996381|ref|YP_004528994.1| multi-sensor hybrid histidine kinase [Treponema azotonutricium
ZAS-9]
gi|333735842|gb|AEF81791.1| multi-sensor hybrid histidine kinase [Treponema azotonutricium
ZAS-9]
Length = 725
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 178/665 (26%), Positives = 289/665 (43%), Gaps = 150/665 (22%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D +++ ++ +AE A +AKS FL+ +SHE+RTP+N ++GM T+++ ++ +
Sbjct: 181 DVTEIERMRQKAEQASIAKSDFLSNMSHEMRTPLNAVIGM------TNIAKASKELNRKD 234
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
GK INE +L +++D+L + S+ NK ++L+
Sbjct: 235 YCLGK-----INEAS----------------VHLLGVINDILDM-SKIEANK-LDLSN-- 269
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKF-TERGHIFVKVHLAERTMVKTDAKDETLLNG 542
EF F Q+I +V N + F + H + V +AE + + D+ L
Sbjct: 270 ----TEF------NFEQMIIKMV-NVINFRVDEKHQNLMVKIAENVPRRIISDDQHLAQ- 317
Query: 543 GTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS--NGGSE 600
++ L L +A F I + AS S
Sbjct: 318 ---------------VIANL--------------LSNAVKFTPEGGKITLEASLVEEESA 348
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
L + V DTGIG+ R+F F QADSSTSR +GGTG+GL+ISK +VE M G I
Sbjct: 349 SCVLQIRVIDTGIGVTKEQAGRLFQSFQQADSSTSRQFGGTGLGLAISKAIVEKMEGTIW 408
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED---LPP--GFKGLKAVVVDEKPVRA 715
S GSTF+FT F K + E+ L P + ++ +VVD+ PV
Sbjct: 409 VESEYGQGSTFAFT----------FRTEKGANEENDSLLSPLVNLETMRTLVVDDDPV-- 456
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ +Y + + + + +S D+ A C + E ++
Sbjct: 457 -ILEY-MEIIALQLGISCDYADSGEAA---------------------CKLIEEKGIYDL 493
Query: 776 QLLDWK-PNGHVFKLPK------------LILLATNISKDECDKAKAGGFADTVIMKPLR 822
+DWK P +L + +++ +++K E + AG I KP+
Sbjct: 494 YFIDWKMPGMDGIELARRIKAKSAGKSIVIMISGADLNKVEAEAKDAG--ISKFIQKPIF 551
Query: 823 ASMIAACLQQVLSTENK---RQAGRGVPNGS-SFHQG----LLRGKKILVVDDNGVNRMV 874
AS IA + L K +G NGS + QG G I++ +D +NR +
Sbjct: 552 ASAIAETINDCLHVSTKISQDSSGSQTSNGSKASDQGHDDNCFLGYHIMLAEDIEINREI 611
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPH-CFDACFMDIQMPEMDGFEATRRIRQMESKA 933
++ G ++ A + K A+D H ++A MD+QMPEMDG++ATR IR +E
Sbjct: 612 VQALMEPTGIKIDYAENGKVAVDLFSKNHGIYNAILMDVQMPEMDGYQATRTIRGIEESR 671
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
Q G K +PI+AMTA+V ++CL GM+ +V KP + ++ +
Sbjct: 672 ALQST-------GPVK----PVPIIAMTANVFREDIEKCLASGMNDHVGKPLDMNDVMAK 720
Query: 994 LAKFF 998
L K+
Sbjct: 721 LRKYL 725
>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1104
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 199/399 (49%), Gaps = 36/399 (9%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + DTGIGIP Q +F PF Q D+ST+R YGGTG+GLSI K LV+LM G+I S
Sbjct: 607 LRFTITDTGIGIPEDKQNDLFAPFTQMDASTTREYGGTGLGLSICKRLVQLMNGEIGVSS 666
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
RP G+TF F+ F + +QS+ +G K ++VD+ + L
Sbjct: 667 RPGEGATFWFSLPFQRQ--------RQSREPLATASIQGRKILIVDDNATNRRLLSVLLE 718
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
G + + ++A K ++ + II + + GE+ G +L+ P+
Sbjct: 719 TWGCRHEEAPDAQNALLKIKKAALEEKEPYSL-IITDMQMPLMDGEELG---RLIKNDPD 774
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN--KRQ 841
L+++ + ++ + + GF+ + KP++ S++ CLQ VL + + +
Sbjct: 775 ---LAGSSLLMMTSIANRGDAARLSEIGFS-AYLTKPIKQSVLFDCLQTVLGADTIPRPK 830
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ + + + R ++L+V+DN VNR VA L G + ++ A+ L++
Sbjct: 831 EPKPIITRHAIAEAKKRRYRLLLVEDNLVNRKVALSILDNLGFRTDAVSNGLEAISALEN 890
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D MD QMPE+DG+EAT+RIR ES+ ++N G +PI+AMT
Sbjct: 891 -LPYDLVLMDCQMPELDGYEATKRIRSAESR----VLNRG-------------IPIIAMT 932
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
A + ++C+ CGMD Y+SKP E L + + K+ S
Sbjct: 933 AHAMAGDREKCIACGMDDYISKPVEPAALNQLVEKWLDS 971
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 105/146 (71%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K AE A++AKSQF+A +SHEIRTPMNG++GM LLLDTDL QR++A+T Q
Sbjct: 441 LRKAKKDAETANIAKSQFVANMSHEIRTPMNGVIGMTGLLLDTDLDERQREFAETIQSSA 500
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+ +IN++LD +KIEA KLELE++ F+LR L+DV L + K++ K +E V V
Sbjct: 501 ANLLTVINDILDFSKIEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFVCMVDPDV 560
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFT 513
P ++GDPGR RQ+I N+ N++KFT
Sbjct: 561 PSLLVGDPGRLRQLIINICNNAIKFT 586
>gi|346991923|ref|ZP_08859995.1| sensor histidine kinase/response regulator [Ruegeria sp. TW15]
Length = 737
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 177/624 (28%), Positives = 269/624 (43%), Gaps = 136/624 (21%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMNGI+GM LL +T ++ QR Y T + G+AL+ +IN+VLD +
Sbjct: 216 KSAFLANMSHEIRTPMNGIVGMTELLTETPMNEEQRLYVSTIRNSGEALLVIINDVLDYS 275
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KL L F+L + +V L R+KG+ L V +P +GDPGR RQI
Sbjct: 276 KIEADKLTLHPEQFDLERCILEVAMLLQPSVRDKGLTLLVDYDLFLPTLFVGDPGRVRQI 335
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+TNLVGN+VKFT +GH+ ++V T D T TE C +T G
Sbjct: 336 LTNLVGNAVKFTAQGHVLIRV---------TGVPDMT-----TES--CDIHVAIEDTGIG 379
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
+EA + + +F + DA+ Q E TG+G
Sbjct: 380 IEADKVPHIFGEFNQVEDAQNRQ-----------------------FEGTGLG------- 409
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
L+I+K L+ +M G + S GS F F +
Sbjct: 410 -----------------------LAITKRLISMMGGAVWVESDAGKGSCFGFRISLPTAE 446
Query: 682 EYVFEDIKQSKSEDLPPGFKGL--KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ +PP G + +VV++ V A+ L+RLG S+ +A
Sbjct: 447 ----------GPQPVPPDLAGQLGRVLVVEDMAVNRAILTKQLDRLGSQAMTCSTGAEAL 496
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
S + D++L + D + D A L K G LP +++++ N
Sbjct: 497 SAMDKTI---------DLVLCDHD--LPDMDGLELATTLRDKGWG---DLP-IVVMSANP 541
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH------ 853
D A + V+ KP+ + + + L + + K + H
Sbjct: 542 GVIHADPAHR--LINGVLQKPIPRAELYSRLMALGAPVFKPDRSDNDASDPETHVQVPQE 599
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF-----DAC 908
Q L+R +L +DN N+++ L+K T E K + L++ F D
Sbjct: 600 QRLMR---VLAAEDNRTNQLI----LRKM--TKELNIDLKFVSNGLEAVETFARFDPDLI 650
Query: 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968
FMDI MP+MDG EAT IR+ E GT + H+PI+A+TA +
Sbjct: 651 FMDISMPKMDGKEATGEIRRREI--------------GTDR----HVPIVALTAHAMTGD 692
Query: 969 FDECLKCGMDGYVSKPFEEENLYR 992
L G+D Y++KP ++ +++
Sbjct: 693 DQGILAAGLDHYLTKPLHKKLIHK 716
>gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae
bacterium KLH11]
gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae
bacterium KLH11]
Length = 748
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 265/613 (43%), Gaps = 116/613 (18%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMNGI+GM LL +T L+ QR Y T + G+AL+ +IN+VLD +
Sbjct: 227 KSAFLANMSHEIRTPMNGIVGMTELLTETPLNEEQRLYISTIRNSGEALLVIINDVLDYS 286
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KL L F+L + +V L R+KG+ L V +P +GDPGR RQI
Sbjct: 287 KIEADKLTLHPEQFDLERCILEVAMLLQPSVRDKGLTLLVDYDLFLPTLFVGDPGRIRQI 346
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSG 561
+TNLVGN+VKFT +GH+ V+V T V DA ++ C +T G
Sbjct: 347 LTNLVGNAVKFTAQGHVLVRV-----TGVP-DASAQS----------CDIHVAIEDTGIG 390
Query: 562 LEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQE 621
+EA + + +F + DA+ Q E TG+G
Sbjct: 391 IEADKIAHIFGEFNQIEDAQNRQ-----------------------FEGTGLG------- 420
Query: 622 RVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
L+I+K L+ +M G + S GS F F +
Sbjct: 421 -----------------------LAITKRLITMMGGTVWVESDVGRGSCFGFRISLPTAE 457
Query: 682 EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASST 741
Q DL + ++V++ V A+ L RLG V + SS +A S
Sbjct: 458 G------PQPAPPDLADQLR--HVLLVEDLAVNRAILTKQLGRLGSRVSVCSSGAEALSL 509
Query: 742 AKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK 801
+ + D++L + D + D A L K G LP +++++++
Sbjct: 510 LDDSI---------DLVLCDHD--LPDMDGLELATTLRDKGWG---DLP-VVVMSSSPGA 554
Query: 802 DECDKAKAGGFADTVIMKPLRASMIAACLQQV---LSTENKRQAGRGVPNGSSFHQGLLR 858
D A D V+ KP+ + + + LQ + + ++R+ P R
Sbjct: 555 IHVDPAHR--LIDGVLQKPIPRAELYSRLQALGAPVFNPDRREERDTRPKAQKQVSPDQR 612
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
++L +DN N+++ K + + A++ + D FMDI MP MD
Sbjct: 613 QMRVLAAEDNRTNQLILKKMTKDLNIDLRFVCNGLEAVETFDT-FAPDLIFMDISMPGMD 671
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G EAT IR+ E GT +R P++A+TA + L G+D
Sbjct: 672 GKEATAEIRRREI--------------GTNRR----TPVVALTAHAMAGDDQGILAAGLD 713
Query: 979 GYVSKPFEEENLY 991
Y++KP ++ ++
Sbjct: 714 HYLTKPLHKKLIH 726
>gi|430748143|ref|YP_007207272.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019863|gb|AGA31577.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1519
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 194/397 (48%), Gaps = 41/397 (10%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ V+L V DTGIGIP Q+++F F QAD+ST+R YGGTG+GL+IS LV+LM G+I
Sbjct: 1021 QGVSLHFAVSDTGIGIPPEQQQKLFKAFSQADTSTTRKYGGTGLGLAISARLVQLMGGEI 1080
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+ GS F FT FG V + +++ + P GL ++VD+ + +
Sbjct: 1081 WLESQAGQGSIFHFTLPFG----LVCGPVARARPVE-PEQVHGLPVLIVDDNATNRRILE 1135
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L G+ + ++A +T L + +P LV D + G D GF L +
Sbjct: 1136 EMLTNWGMKPTTVAGGREAIAT----LAEARGAGRP-FALVLLDAMMPGMD-GFT--LAE 1187
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-- 837
L++L++ +++ + + G A T +MKP+R S + + L
Sbjct: 1188 QIKQDSALTGSTLMMLSSANRREDAARCQELGVA-TYLMKPIRESSLLDAIMTTLGASMS 1246
Query: 838 ----NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ A +PNGS + R ++L+ +DN +N+ +A LKK G V + +
Sbjct: 1247 DEPYGAQPAAPAMPNGS--RRTWKRMLRLLLAEDNAINQRLAMALLKKQGHQVVVVNNGR 1304
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
AL + FDA MD+QMPEMDGFEAT IR E+ GT +
Sbjct: 1305 EALAAMNGSR-FDAVLMDVQMPEMDGFEATAAIRSREA--------------GTG----V 1345
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
H I+AMTA + D CL GMD YVSKP E+L
Sbjct: 1346 HTTIIAMTAHALKGDRDRCLDAGMDAYVSKPLRLEDL 1382
Score = 146 bits (369), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 105/147 (71%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLA +SHEIRTP+NGI+GM L LDT+L+ Q++Y ++ L+ +IN++LD +
Sbjct: 873 KSEFLANMSHEIRTPLNGIIGMTELALDTELTPDQQEYLGMVKLSADHLLTVINDILDFS 932
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KL+L+ + F+LR LDD ++ + ++ KG+ELA V+ VP+ ++GDP R Q+
Sbjct: 933 KIEAGKLDLDIIDFHLRDALDDTMATLAMRAHKKGLELADHVAADVPDVLVGDPHRLCQV 992
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERT 528
+ NL+GN++KFTERG ++V + R+
Sbjct: 993 VVNLIGNAIKFTERGEAVLRVEVQSRS 1019
>gi|171912784|ref|ZP_02928254.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
4136]
Length = 821
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 178/636 (27%), Positives = 279/636 (43%), Gaps = 113/636 (17%)
Query: 40 ALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTIL 99
AL +W+ G+ + +R +EE +RR + RA +L+ Q ++ +HA+ L
Sbjct: 24 ALTVWVSGLLW--KGNHRAWEEE--VRR------LGQDRAELLRGQVLRSMEVLHAMVAL 73
Query: 100 VSTFHYFKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFE---RQHGMT- 155
Y + + F ++ +P L +A+ PRV RE +E R+ G
Sbjct: 74 -----YVARGGEVTRTEFRDFVNEALARQPELQALAWDPRVAGGDREAWEARARREGFPN 128
Query: 156 --ITTMKSE----PSPIRDEYAPVMFYQEPMSHVKSLDMMSGEED--RENILRARATGKA 207
T KSE P+ +RDEY PV + + + ++L G E R + +AR TG A
Sbjct: 129 FHFTEEKSEGHMGPAQLRDEYFPVFYLESLQRNAQALGFDVGSEPTRRSALEQARDTGTA 188
Query: 208 VLTRPFRL---LGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENL 264
T P RL GS G ++ P+Y+ + STVEER G+ F + +VE
Sbjct: 189 TATAPIRLAQETGSQR-GFLVFEPLYRGQA---STVEERRLLLQGFATAVFRIGDMVEMS 244
Query: 265 LGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDS-----FRKHKM 319
L + A + IL+ V D+ +D +++ + + + E+ LD F
Sbjct: 245 L-RHASKREILLTVRDL---ADGQLIHRQEGTRLKGAPIWETTLDVAGRRWALLFEPAPG 300
Query: 320 ICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHK-----MQELKVR 374
R+ PW AL G L+ ++L G + + + + + E+ +R
Sbjct: 301 FSRFRTDG-MPWVALGA-------GSLISFLLAGHLWSLARRAAEIRESNAVLLNEVAIR 352
Query: 375 ------AEAADVAKSQFLATVSHEIRTPMNGILGMLALLL-DTDLSSTQRDYAQTAQICG 427
AEAA+ AKS+FLA +SHEIRTPMN ILG +L + L RD T G
Sbjct: 353 KAAEAAAEAANQAKSEFLANMSHEIRTPMNAILGYSQILAREPTLHPFHRDAVATILHSG 412
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK--GIELAVFVSD 485
L+ LINE+LD +KI+A ++EL F+L A L D+ +F ++ K G+ L + V D
Sbjct: 413 DHLLHLINEILDLSKIDAGRMELSLSEFDLTATLRDLEGMFQQRCEEKQLGLRLELPVPD 472
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV---------------------HL 524
P V GD G+ RQ++ NL+ N+VKFT RG + ++V L
Sbjct: 473 H-PIMVRGDEGKLRQVLINLLANAVKFTARGRVTLRVLPGDADVWRFEVEDTGTGISEEL 531
Query: 525 AERTMVKTDAKDETLLNGGT------------------------EEGVCRSGTGQFNTLS 560
ER T + GGT G C S T +
Sbjct: 532 QERIFEPFQQGGPTTIPGGTGLGLAIARKQMEIMGGSLNVRSEVGRGSCFSATLALPQTA 591
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASN 596
+ +GR + + HL A G++ A +++ +A N
Sbjct: 592 AARSGNGRTTVPRVLHL--AAGYKLRALVVDDIAEN 625
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD--KLQSPHCFDACFMDIQMPEMD 918
+ LVVDD NR V A L G V A + + A++ ++ P FMD++MPE+D
Sbjct: 615 RALVVDDIAENREVLATLLTLVGCEVVLAENGRQAIEVVRVSRPQI---VFMDMRMPELD 671
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G EATRR+ + GS + L I+A +A + + LK G D
Sbjct: 672 GIEATRRL----------VEEFGS----------MGLKIVATSASALAHEREAYLKTGCD 711
Query: 979 GYVSKPFEEENLY 991
+V+KPF E +Y
Sbjct: 712 DFVAKPFRAERIY 724
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 19/229 (8%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VEDTG GI QER+F PF Q +T GGTG+GL+I++ +E+M G ++ S
Sbjct: 520 VEDTGTGISEELQERIFEPFQQGGPTTI--PGGTGLGLAIARKQMEIMGGSLNVRSEVGR 577
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQS--KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GS FS T + + + + + L G+K L+A+VVD+ V L +
Sbjct: 578 GSCFSATLALPQTAAARSGNGRTTVPRVLHLAAGYK-LRALVVDDIAENREVLATLLTLV 636
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
G V ++ + + A + +P I+ ++ E G A + G
Sbjct: 637 GCEVVLAENGRQAIEVVRVS--------RPQIVFMDMRM---PELDGIEATRRLVEEFGS 685
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
+ L + A+ ++ + K G D + KP RA I C++ +L
Sbjct: 686 M-GLKIVATSASALAHEREAYLKTG--CDDFVAKPFRAERIYGCIETLL 731
>gi|443475298|ref|ZP_21065252.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019888|gb|ELS33917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1481
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/417 (29%), Positives = 205/417 (49%), Gaps = 36/417 (8%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
++++A N + TL V DTGIGIP Q ++F PF Q D+ST+RHYGGTG+GL+I K
Sbjct: 947 VSLIAENDS--EATLRFAVIDTGIGIPKGEQSKLFQPFTQVDASTTRHYGGTGLGLAICK 1004
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
+VELM G+I S+ GSTFSF +F K S + DL P +G++ +VVD
Sbjct: 1005 QIVELMGGKIYLESQENFGSTFSFELLFKKQSNC------PSDNYDL-PSLQGMRVLVVD 1057
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+ + +Y L+ + V ++ DA S + + D +Q +IL + + GE
Sbjct: 1058 DSSTNCRILKYQLSAWDMRVDITEYPMDAMSHLIHAVNIG-DPYQL-VILDMQMPDLDGE 1115
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA-SMIAA 828
G + + K LI+L++ DE + GFA + KP++ ++ +
Sbjct: 1116 SLGKQIK------ESPILKNTHLIMLSSLDRTDEVKRLLDIGFAH-YLRKPVKKIRLLNS 1168
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
+ + + S + KILV +D+ +N+ VA L G + +
Sbjct: 1169 IINSIKGLPPDLAIVPSKDDNQSLDPIVTSKLKILVAEDSPINQKVAINQLLNLGYSADV 1228
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ K L+ ++ H +D MD QMP +DG+ TR++R +ESKA+E+
Sbjct: 1229 VGNGKEVLELVEQIH-YDMILMDCQMPILDGYVTTRKLRDLESKADERR----------- 1276
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
+ I+A+TA+ + D CL GMD Y+SKP +E L ++ + + P++
Sbjct: 1277 -----PIVIIALTANAMKDDRDRCLAAGMDDYLSKPLRKEELAAMISYWSQVIPITS 1328
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 105/153 (68%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ AE A +AKS FLA +SHEIRTPMN ++GM LLLDT L+ QRD+AQT + G L+
Sbjct: 797 RADAEQAAIAKSSFLAMMSHEIRTPMNAVIGMTGLLLDTTLNDQQRDFAQTIRCSGDHLL 856
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LINE+LD +K+EA ++ LE + F+L +++V + + +++K +E+ F+ VP+ +
Sbjct: 857 NLINEILDFSKLEAGEMLLENLDFDLEISIEEVAEILAPFAQSKELEIVTFIHTDVPKCI 916
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
GD GR RQ++ NLV N++KFT G I ++V L
Sbjct: 917 QGDVGRLRQVLLNLVNNAIKFTIHGEITIEVSL 949
>gi|218888070|ref|YP_002437391.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218759024|gb|ACL09923.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1228
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 166/332 (50%), Gaps = 38/332 (11%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+ GAA+ + E + E E A AKS+FLA +SHEIRTP+N I+G+ L L
Sbjct: 561 IIGAALERRRTE---QTLAESARGLEEASRAKSEFLANMSHEIRTPLNAIIGLTELSLQE 617
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
L + + A + +AL+ ++N++LD +++EA KL LE + F ++ V+ +
Sbjct: 618 RLPGDVAENLRAALVSAEALLGIVNDLLDLSRVEAGKLRLECIDFAPARLVRGVMRVMGH 677
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
+ KG+ L + + VP + GDPGR RQ++ N + N++KFT+ G + V V ++
Sbjct: 678 TAERKGLSLTLHIDRDVPRHLRGDPGRLRQVLVNFISNAIKFTDEGGVHVAVCRSDGPDA 737
Query: 531 KTDAKDETLLNGG-TEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589
+A + + + GG T SGT + SGL DG W
Sbjct: 738 -VNAPEASGMGGGVTCAEPLASGTVFGDASSGLHT-DGDTQW------------------ 777
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
L V DTGIGIP E +F F QAD+ST+R YGG+G+GL+I +
Sbjct: 778 --------------LCFSVRDTGIGIPDDKHELIFENFRQADASTARRYGGSGLGLAICR 823
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681
++M G+I S P GSTF FG CK
Sbjct: 824 KFTDMMGGRIVLDSTPGQGSTFRVLLPFGTCK 855
Score = 43.5 bits (101), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
P GS+F Q ++L+V+ + VNR + AL + G AA+ + ALD ++ FD
Sbjct: 930 PVGSAFRQTARDPLRVLLVESDDVNRHAVSRALSRGGHHPVTAAAGREALDAART-QRFD 988
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
D +MDG + R +R++ A +P+L MT D
Sbjct: 989 LVITDAHPRDMDGADVVRALRRLADAATPS-----------------DVPVLLMTGD 1028
>gi|409912755|ref|YP_006891220.1| sensor histidine kinase response regulator [Geobacter
sulfurreducens KN400]
gi|407972383|gb|ADI85072.2| sensor histidine kinase response regulator, DUF3365, PAS, PAS and
Hpt domain-containing, heme-binding [Geobacter
sulfurreducens KN400]
Length = 1025
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 158/308 (51%), Gaps = 72/308 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE+A+ AKS+FLA +SHEIRTPMNG++GM LLL+T L+ QR YA+ + +L+
Sbjct: 503 KEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEIVRTSAASLL 562
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+I+++LD +KIEA +LE+E + F+LR +LDD+ + K+ KG+ + +VP F
Sbjct: 563 QVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRF- 621
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L+G+ V+ + V V+LA +
Sbjct: 622 -------------LMGDPVRLKQ-----VLVNLAGNAL---------------------- 641
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLMVCVED 610
KF H Q S+ + + G S V L V D
Sbjct: 642 ---------------------KFTH-------QGEISVEVGSLTKTGDS--VKLRFAVRD 671
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIGIP E +F F QAD+S +R YGGTG+GL+I K LV++M G+I SRP VGS
Sbjct: 672 TGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSE 731
Query: 671 FSFTAVFG 678
F FTA FG
Sbjct: 732 FWFTASFG 739
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+IL+V+DN NR VA G +K+ G + AA+ ALD L + +D MD+QMP MDGF
Sbjct: 769 RILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATT-PYDLVLMDVQMPVMDGF 827
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATR IR + S +P++A+TA + +CL GM+ Y
Sbjct: 828 EATRHIRDVRSPVLNH-----------------EIPVIALTAHAMKGDRRKCLDAGMNDY 870
Query: 981 VSKPFEEENLYRELAKFFKSK 1001
++KP + L L K+ +
Sbjct: 871 LAKPIFPDALAEMLVKWLPRR 891
>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
Length = 1005
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 194/415 (46%), Gaps = 67/415 (16%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D++++ V DTG+GIP + E++F F Q D +++R Y GTG+GL+I+K LV +M G ++
Sbjct: 422 DISILFSVRDTGVGIPANELEKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVT 481
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S +GS FSF I + P G+K +VVD+K + +
Sbjct: 482 VESDINMGSIFSFKLTL---------QIPVNAVSSNPNNLYGMKTLVVDDKETSREILRK 532
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L V + KD S K E + S F+ L+DW
Sbjct: 533 ILESWSFEVYTA---KDGESALKLAQAEHE------------------KGSPFHLVLVDW 571
Query: 781 K-PNGHVFKLPK---------------LILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
K P F+ + ++++ T K+ +K + V+ KP+ S
Sbjct: 572 KMPGMDGFETAEKIREFSRDSGIHDKIIMIMVTAYEKELTEKMSGNDNFNFVLSKPVTPS 631
Query: 825 MIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGA 884
++ + + +N +A ++ + GK +L+V+DN VNR+VA L+KFG
Sbjct: 632 ILFDSIVNIQYPKNSAEAETYNEVAKAYPGNDIGGKSVLLVEDNSVNRLVAQETLQKFGL 691
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
TVE A + K A++K++S +DA MDI MP MDG+ AT IRQ+
Sbjct: 692 TVEVALNGKDAVEKVKSKK-YDAVLMDIHMPVMDGYRATAEIRQI--------------- 735
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
D+ LPI+A+TAD + ++C GM+ ++SKP E L++ L K+ +
Sbjct: 736 -----FDKKQLPIIALTADALDTHKEKCFAVGMNDHLSKPINIEILFKVLCKWLQ 785
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 101/154 (65%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS FLA +SHEIRTP+NGI+G+ L+LD +LS+ Q+DY + KAL+ ++
Sbjct: 266 AEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLELSNKQKDYMRKIDRSAKALLGIL 325
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N+VLD +KIEA KL ++ F ++ + LF+ K KG+EL + ++P+ + GD
Sbjct: 326 NDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFEIDPEIPQHLTGD 385
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
P R +Q++ NLV N+VKFT+ G I +K + E T
Sbjct: 386 PLRIKQVLINLVSNAVKFTDEGEIHIKAEVTEIT 419
>gi|400756633|ref|NP_953363.2| sensor histidine kinase response regulator [Geobacter
sulfurreducens PCA]
gi|399107944|gb|AAR35690.2| sensor histidine kinase response regulator, DUF3365, PAS, PAS and
Hpt domain-containing, heme-binding [Geobacter
sulfurreducens PCA]
Length = 1025
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 158/308 (51%), Gaps = 72/308 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE+A+ AKS+FLA +SHEIRTPMNG++GM LLL+T L+ QR YA+ + +L+
Sbjct: 503 KEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEIVRTSAASLL 562
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+I+++LD +KIEA +LE+E + F+LR +LDD+ + K+ KG+ + +VP F
Sbjct: 563 QVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRF- 621
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L+G+ V+ + V V+LA +
Sbjct: 622 -------------LMGDPVRLKQ-----VLVNLAGNAL---------------------- 641
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLMVCVED 610
KF H Q S+ + + G S V L V D
Sbjct: 642 ---------------------KFTH-------QGEISVEVGSLTKTGDS--VKLRFAVRD 671
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIGIP E +F F QAD+S +R YGGTG+GL+I K LV++M G+I SRP VGS
Sbjct: 672 TGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSE 731
Query: 671 FSFTAVFG 678
F FTA FG
Sbjct: 732 FWFTASFG 739
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+IL+V+DN NR VA G +K+ G + AA+ ALD L + +D MD+QMP MDGF
Sbjct: 769 RILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATT-PYDLVLMDVQMPVMDGF 827
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATR IR + S +P++A+TA + +CL GM+ Y
Sbjct: 828 EATRHIRDVRSPVLNH-----------------EIPVIALTAHAMKGDRRKCLDAGMNDY 870
Query: 981 VSKPFEEENLYRELAKFFKSK 1001
++KP + L L K+ +
Sbjct: 871 LAKPIFPDALAEMLVKWLPRR 891
>gi|418063333|ref|ZP_12701026.1| PAS/PAC sensor signal transduction histidine kinase, partial
[Methylobacterium extorquens DSM 13060]
gi|373559802|gb|EHP86085.1| PAS/PAC sensor signal transduction histidine kinase, partial
[Methylobacterium extorquens DSM 13060]
Length = 478
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 184/379 (48%), Gaps = 91/379 (24%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ E K RAEAA+VAKS+FLATVSHE+RTP+NGILGM LLLDT L QR Y + + G
Sbjct: 164 LDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSG 223
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
KAL+ L++ +LD ++IEA +L+L A F++ A+++ V+ L + ++++KG+E+A+ ++D +
Sbjct: 224 KALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDL 283
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
+GD R RQI+ NL GN++KFT+ G + V
Sbjct: 284 AALRVGDADRVRQILVNLAGNAIKFTQTGGVGVS-------------------------- 317
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ RSG GQ EG ++
Sbjct: 318 LARSGEGQ------------------------GEGL---------------------VLT 332
Query: 608 VEDTGIGIPLSAQERV---FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
VEDTG GIP +ER+ F F Q D S S GTG+GL+I++ LVE M G I S
Sbjct: 333 VEDTGPGIP---EERIPILFEEFEQGDDSASHE--GTGLGLAITRRLVERMNGTIEARST 387
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
GSTF + + + P K ++V P +A L+R
Sbjct: 388 VGRGSTFRVMLPLPAAEGAMSPET---------PSLAPRKVLIVAASPYQAPFLARRLSR 438
Query: 725 LG---IMVKMSSSIKDASS 740
G ++V + + DA S
Sbjct: 439 SGAAAVVVNSAEAALDALS 457
>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
Length = 1322
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 192/402 (47%), Gaps = 46/402 (11%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + V+DTGIGI + Q+++F PF QAD +TSR +GGTG+GLSI + L +LM+G I S
Sbjct: 762 LQIHVKDTGIGISPAQQQKLFQPFTQADVTTSRRFGGTGLGLSICRQLADLMQGSIQIES 821
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
VG+TF+ ++ + E P GL+ ++VD+ + + HL
Sbjct: 822 AVGVGTTFTVDLPLTSA------EVSKVAPEHEP--LAGLRVLLVDDNEINLEILSEHLV 873
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL--DWK 781
G V S + A S T+ I +++K + GF+ ++L +
Sbjct: 874 AWGCRVSKCLSAETALSLLSKPATTGPAF---SIAIIDK------QMPGFDGEMLAGSIR 924
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV---LSTEN 838
H+ L L+L + + S D D I KP+RA + LQ++ + EN
Sbjct: 925 KYAHLDSLRILMLTSVDFSDAAVDGIPPW---DAWINKPVRAGRLLEMLQKLRDYVPLEN 981
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
R+ P + +IL+ DDN VN +V ++ G E AA L+K
Sbjct: 982 ARELSAQQP----LSETKTPSARILIADDNEVNLIVTTELVRSLGFDTETAADGSIVLEK 1037
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L+S +D MD QMP +DGFE TR+IR++E +A NG H+PI+
Sbjct: 1038 LKS-QTYDLILMDCQMPTLDGFETTRKIREIEKQAQ----NGE------------HIPIV 1080
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
A+TA+ I D C + GMDGY++KP + L L + +
Sbjct: 1081 ALTANAIQGDNDRCRQAGMDGYLTKPIDHAQLSNTLLQILTT 1122
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 99/144 (68%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
SQFLA +SHEIRTP+NG++GML LL T L Q+ Y + L+ LIN++LD +K
Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDRQKRYVTICRSSADTLLGLINDILDLSK 670
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
IEA ++EL V F+L +++D+ +F ++ KG+ELA ++ VP+ + GDP R RQI+
Sbjct: 671 IEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERLRQIL 730
Query: 503 TNLVGNSVKFTERGHIFVKVHLAE 526
NLVGN++KFT G++ +KV +A+
Sbjct: 731 VNLVGNALKFTSVGYVLIKVSMAQ 754
>gi|407939108|ref|YP_006854749.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. KKS102]
gi|407896902|gb|AFU46111.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. KKS102]
Length = 1028
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 192/410 (46%), Gaps = 64/410 (15%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V+DTGIG+ Q R+F F QAD+ST+R YGGTG+GL+ISK L LM G++
Sbjct: 419 VLLRFEVQDTGIGLTTEQQSRLFRSFEQADTSTTRKYGGTGLGLAISKKLAGLMGGEVGV 478
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQY 720
S+P VGSTF FTA G S + LP P +G +VVD+ +
Sbjct: 479 QSQPGVGSTFWFTARLGLGNP--------SHAPLLPTPDLRGRHVLVVDDSEQARHILGE 530
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L R+ V +SS ++A + A+ +E +P C I+ +DW
Sbjct: 531 MLARMSFTVTTASSGEEAVAQAR----VAEQAGRP--------CEIA---------FVDW 569
Query: 781 KPNG----------HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
K G + P ++ T +D+ ++ KP+ S +
Sbjct: 570 KMPGMDGFDTHRALAQLQHPPHTVIVTAAGRDDVQSELECAGLQLMLSKPVSPSQLFDAA 629
Query: 831 QQVLSTENKRQAG-RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
Q L + + G + H + G ++L+VDDN +N+ V A L G V+ A
Sbjct: 630 MQALGGQARSSDGRAAQAPRRAAHLSAIAGARVLLVDDNDLNQQVGAELLSGAGLVVDVA 689
Query: 890 ASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ + ALD L Q+P +D MD+QMPEMDG ATR +RQ + A
Sbjct: 690 QNGQVALDMLAQTP--YDLVLMDMQMPEMDGLTATRHLRQNPAWA--------------- 732
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP+LAMTA+ + D CL+ GM+G+++KP + + L+ L ++
Sbjct: 733 -----QLPVLAMTANAMSRDRDLCLEAGMNGHLAKPIDPDELFAALLQWI 777
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 105/156 (67%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ RAE A KS FLA +SHEIRTPMN ++GM L L TDL+ QRDY + Q G+ L+
Sbjct: 259 RARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALGTDLTPRQRDYVEKIQRSGQHLL 318
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LIN++LD +KIEA KLE+E V F+LR +LD+V +L S+K +KG+EL V +P+ +
Sbjct: 319 GLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSDKCAHKGLELLFDVDPALPDDL 378
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GDP R QI+ N N+VKFT+ G I V+V ER
Sbjct: 379 RGDPLRLGQILVNYANNAVKFTDTGEIIVRVTETER 414
>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 1052
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 200/404 (49%), Gaps = 23/404 (5%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGI + E +F PF QAD ST+R YGGTG+GLSI K + LM G +
Sbjct: 657 VKLHASVRDTGIGIAGNKLELIFDPFQQADGSTTRKYGGTGLGLSICKQISRLMGGDVWA 716
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GS F FTA GK + ++ P G KA++VD+ + +
Sbjct: 717 ESDEGKGSIFHFTAWLGKSE-------TKAARPYTPVSLSGKKALLVDDNDTNLKILAAY 769
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI-SGEDSGFNAQLLDW 780
L +GI + + + D ++ + +D F DI + + I SG + +L +
Sbjct: 770 LKPVGIRLVLLNKGVDVLPLLESAI-GEQDPF--DICITDIQMPIMSGYEVARQIRLFES 826
Query: 781 KPNGHVFKLPKLILLA-TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+G + L L+A +++ + + + GF D + KP+R + L+++L
Sbjct: 827 PVSGLQTSIRSLPLMALSSVRGQDAKRCREVGF-DGFLGKPIRRERLYRMLERILGAAVA 885
Query: 840 RQAGRGVPNGS-----SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
V G S + + R +IL+ +DN VN+ +A LKK G VE A + +
Sbjct: 886 GDQRNSVEQGEIMTQYSVREEMKRSVRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGRE 945
Query: 895 ALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A++ L S + F FMD+QMPEMDGF ATR IR++ES E ++ D A
Sbjct: 946 AIEILMASRNGFHLIFMDVQMPEMDGFTATREIRRLES---EHVLKPPQCTDFHASTIA- 1001
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+PI+AMTA + + C+ GMD Y++KP + E ++ + K+
Sbjct: 1002 RIPIIAMTAHAMKGDREACIDAGMDDYITKPIKREGVFSIVEKW 1045
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 109/174 (62%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + I + ++ QE + RAE A+ AKS+FLA +SHEIRTPMN ++G LLLD+ L
Sbjct: 478 GTVMDITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMNAVIGFTDLLLDSGL 537
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
Q DYA+T + G+ LI+LIN++LD +KIEA L+ E + F+ + D+ + +
Sbjct: 538 DDIQMDYAKTIKQSGEGLISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRI 597
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
K IE+ + D VP+ + GDP R RQ++TNL+ N+ KFTE G I + + + E
Sbjct: 598 GEKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTEAGEIELSLDVEE 651
>gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B]
gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B]
Length = 632
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 191/387 (49%), Gaps = 78/387 (20%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KV++ +++ + RAE A+ KS+FLAT+SHEIRTPMNGI+G+ +LL DTDL Q+++
Sbjct: 222 KVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDTDLDPQQKEF 281
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ +L+ +I+++LD +K+EA K+ELE ++LR +LDDV+SL S K++ K ++L
Sbjct: 282 VEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQL 341
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+ +P V GD R +Q++ NL+ N+ + ER
Sbjct: 342 LSDIDPHLPMEVQGDATRLKQVLNNLLSNA------------IKFTER------------ 377
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
G L L DG + +F+
Sbjct: 378 --------------GHVKLLVALSRLDGETAHIRFR------------------------ 399
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
V D+GIGI Q+ +F F QAD ST+R YGGTG+GL+I+ LV LM G+I
Sbjct: 400 --------VVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEI 451
Query: 660 SFVSRPQVGSTFSFT---AVFGKCKEYVFE----DIKQSKSEDLPPGFKGLKAV-VVDEK 711
S +GS F F+ AV Y + D ++++ ++ P V VV++
Sbjct: 452 QLTSELGLGSCFEFSIPVAVINAQSTYTDQLNVLDFRKAEDNEISPQDNDKPWVLVVEDT 511
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDA 738
V V + L +LG+ V +++ ++A
Sbjct: 512 IVNQKVVRIMLEKLGVRVSVANHGEEA 538
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 20/129 (15%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+LVV+D VN+ V L+K G V A + AL +L FD FMD QMP MDGF
Sbjct: 505 VLVVEDTIVNQKVVRIMLEKLGVRVSVANHGEEAL-QLCDQQPFDLIFMDCQMPVMDGFI 563
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
AT RIR+M H+PI+A++A+VI C GM+ +V
Sbjct: 564 ATERIRKMGEWGK-------------------HVPIIALSANVIKEDQQHCFDVGMNEFV 604
Query: 982 SKPFEEENL 990
+KP + L
Sbjct: 605 AKPVTKTRL 613
>gi|406961810|gb|EKD88400.1| sensory box histidine kinase/response regulator, partial
[uncultured bacterium]
Length = 478
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 124/182 (68%)
Query: 347 VGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
V I+ G I+ + + ++ E K AE AD AKS+FLA +SHEIRTPMNGI+GML L
Sbjct: 230 VPVIVEGKKQGILAIYYNVSELVEAKRLAEQADRAKSEFLANMSHEIRTPMNGIMGMLEL 289
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
LLDT L+S QRDY TA+ +AL+ ++N+VLD +KIEA +L ++A+ ++LR+ ++ V
Sbjct: 290 LLDTSLNSEQRDYVSTARDSAEALLGILNDVLDFSKIEAGQLTIDAIEYDLRSTVEGVAH 349
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
++ NKGIELA + VP VLGD GR RQ++ NLVGN++KFT G + ++V +
Sbjct: 350 TLVSRAENKGIELACLIDKDVPSRVLGDAGRLRQVLINLVGNAIKFTSEGEVVIRVMMQS 409
Query: 527 RT 528
+T
Sbjct: 410 KT 411
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+I +M + + TL V DTGIGIPL Q+ VF F+QADSS++R YGGTG+GL+IS
Sbjct: 402 VIRVMMQSKTEKTSTLRFLVSDTGIGIPLDRQKAVFERFVQADSSSTRKYGGTGLGLTIS 461
Query: 649 KCLVELMRGQISFVSRP 665
L ++M G I S P
Sbjct: 462 AQLTKMMGGDIGLESEP 478
>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
Length = 1268
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 205/405 (50%), Gaps = 43/405 (10%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
++ L ++DTGIGI L Q +F F QADSS SR YGGTG+GL+ISK LV LM G+I
Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTFSF V ++ ++ S+ + L ++VD+ + Q
Sbjct: 746 VESEFGCGSTFSFNVVVRNAEKRAIQN-----SQTFTRSNEKLSVLIVDDNDSSRIILQG 800
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779
LG K++S ++AS K + D + D++ V D + G+D F +L +
Sbjct: 801 IAVSLGWQAKIASDAQEASLLVKQ---AHRDSTRYDVVFV--DWRMPGKDGLTFARELRE 855
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAG--GFADTVIMKPLRASMIAACLQQVLSTE 837
+ + LI++ T K+ D+ + D ++KP+ +M+ +++V+ +
Sbjct: 856 LHSS-----VVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVFGD 910
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+P H+ L+G +L+V+DN N++VA+ L++ GAT++ A+S + AL+
Sbjct: 911 ----LDLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALE 966
Query: 898 KLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
L+S FD MDIQMP MDG++ TR IR++ R +L LP
Sbjct: 967 MLESTAEHFDMVLMDIQMPGMDGYQTTREIRKL-------------------PRHQL-LP 1006
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+A+TA + CL GM +++KPF+ L ++ K++
Sbjct: 1007 IIAITAHAMSDDIAACLAAGMQDHIAKPFDLNELTTKILSHHKAE 1051
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 119/179 (66%), Gaps = 2/179 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G L G++ G A + K ++ + K +AE+A+ AKS+FLA +SHEIRTPMNG+LG+
Sbjct: 501 GQLAGFL--GIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGL 558
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
L L+ ++ L Q DY + A K+L+ L+N++LD +KIEA KLEL+ F+L +L D
Sbjct: 559 LQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQD 618
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ +FS + KG+E+ V+ VPE +LGD R +Q++ NLVGN++KFT++G I + +
Sbjct: 619 IGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677
>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
Length = 1268
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 205/405 (50%), Gaps = 43/405 (10%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
++ L ++DTGIGI L Q +F F QADSS SR YGGTG+GL+ISK LV LM G+I
Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTFSF V ++ ++ S+ + L ++VD+ + Q
Sbjct: 746 VESEFGCGSTFSFNVVVRNAEKRAIQN-----SQTFTRSNEKLSVLIVDDNDSSRIILQG 800
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779
LG K++S ++AS K + D + D++ V D + G+D F +L +
Sbjct: 801 IAVSLGWQAKIASDAQEASLLVKQ---AHRDSTRYDVVFV--DWRMPGKDGLTFARELRE 855
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAG--GFADTVIMKPLRASMIAACLQQVLSTE 837
+ + LI++ T K+ D+ + D ++KP+ +M+ +++V+ +
Sbjct: 856 LHSS-----VVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVFGD 910
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+P H+ L+G +L+V+DN N++VA+ L++ GAT++ A+S + AL+
Sbjct: 911 ----LDLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALE 966
Query: 898 KLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
L+S FD MDIQMP MDG++ TR IR++ R +L LP
Sbjct: 967 MLESTAEHFDMVLMDIQMPGMDGYQTTREIRKL-------------------PRHQL-LP 1006
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+A+TA + CL GM +++KPF+ L ++ K++
Sbjct: 1007 IIAITAHAMSDDIAACLAAGMQDHIAKPFDLNELTTKILSHHKAE 1051
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 119/179 (66%), Gaps = 2/179 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G L G++ G A + K ++ + K +AE+A+ AKS+FLA +SHEIRTPMNG+LG+
Sbjct: 501 GQLAGFL--GIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGL 558
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
L L+ ++ L Q DY + A K+L+ L+N++LD +KIEA KLEL+ F+L +L D
Sbjct: 559 LQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQD 618
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ +FS + KG+E+ V+ VPE +LGD R +Q++ NLVGN++KFT++G I + +
Sbjct: 619 IGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677
>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 1616
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 170/644 (26%), Positives = 271/644 (42%), Gaps = 140/644 (21%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A KS FLA +SHEIRTPMN I+ G + +AL
Sbjct: 879 AEDATRMKSDFLANMSHEIRTPMNAII-------------------------GMSHLALK 913
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
E+ R +K++ + +L I++D+L ++ +E F DKV +
Sbjct: 914 TELTPRQHDYVKKIQ--SAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDN---- 967
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
I NL+ + +F RT+V + +L V + G
Sbjct: 968 -------IANLLTEKTRAKSLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFTENG 1020
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
+ + ++ + K + E V L V DTGIG
Sbjct: 1021 EIDIIA------------RVKERSETE--------------------VLLYFAVRDTGIG 1048
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
I R+F F QAD+ST+R +GGTG+GL+ISK L ELM G++ S GSTF FT
Sbjct: 1049 ITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWFT 1108
Query: 675 AVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
A G K LP P +G + +VVD+ N ++ + +
Sbjct: 1109 ARMGIG--------TVRKRRLLPSPDLRGRRVLVVDDND----------NARTVLADLMA 1150
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG--------H 785
+ +T +GL + ++ K ++G + + LLDW+ G H
Sbjct: 1151 GMTFQVTTRASGLEAVDEV---------KRAAMAG--TPYEIVLLDWRMPGMDGIETAHH 1199
Query: 786 VFKL-----PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ L P+L+++ ++ + G D V++KP+ AS++ + ++ +
Sbjct: 1200 LMALGLDPAPRLLMVTAYGREEVLNLITEAGIED-VLIKPVSASILFDTIMRLFGCQPAE 1258
Query: 841 QAGRGVPNG---SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
R V G S H +RG +IL+V+DN +N+ VA L G V+ A AL
Sbjct: 1259 P--RDVDGGHSSSEMHLETIRGARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALA 1316
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
K++ + +D MD+QMP MDG ATR IR++ D HLPI
Sbjct: 1317 KVRR-NAYDMVLMDMQMPVMDGVAATREIRRL------------GQFD--------HLPI 1355
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+AMTA+ + D CL GM+ +++KP + + L+ L ++ +
Sbjct: 1356 VAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRWIAPR 1399
>gi|406890151|gb|EKD36126.1| hypothetical protein ACD_75C01623G0001, partial [uncultured
bacterium]
Length = 804
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 159/308 (51%), Gaps = 72/308 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE+A+ AKS+FLA +SHEIRTPMNG++GM LLL+T L+ QR YA+ + +L+
Sbjct: 503 KEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEIVRTSAASLL 562
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+I+++LD +KIEA +LE+E + F+LR +LDD+ + K+ KG+ + +VP
Sbjct: 563 QVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVP--- 619
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
RF L+G+ V+ + V V+LA +
Sbjct: 620 -----RF------LMGDPVRLKQ-----VLVNLAGNAL---------------------- 641
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLMVCVED 610
KF H Q S+ + + G S V L V D
Sbjct: 642 ---------------------KFTH-------QGEISVEVGSLTKTGDS--VKLRFAVRD 671
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIGIP E +F F QAD+S +R YGGTG+GL+I K LV++M G+I SRP VGS
Sbjct: 672 TGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSE 731
Query: 671 FSFTAVFG 678
F FTA FG
Sbjct: 732 FWFTASFG 739
>gi|422306135|ref|ZP_16393320.1| sensory box protein [Vibrio cholerae CP1035(8)]
gi|408627199|gb|EKL00016.1| sensory box protein [Vibrio cholerae CP1035(8)]
Length = 1268
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 205/405 (50%), Gaps = 43/405 (10%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
++ L ++DTGIGI L Q +F F QADSS SR YGGTG+GL+ISK LV LM G+I
Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTFSF V ++ ++ S+ + L ++VD+ + Q
Sbjct: 746 VESEFGCGSTFSFNVVVRNAEKRAIQN-----SQTFTRSNEKLSVLIVDDNDSSRIILQG 800
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779
LG K++S ++AS K + D + D++ V D + G+D F +L +
Sbjct: 801 IAVSLGWQAKIASDAQEASLLVKQ---AHRDSTRYDVVFV--DWRMPGKDGLTFARELRE 855
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAG--GFADTVIMKPLRASMIAACLQQVLSTE 837
+ + LI++ T K+ D+ + D ++KP+ +M+ +++V+ +
Sbjct: 856 LHSS-----VVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVFGD 910
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+P H+ L+G +L+V+DN N++VA+ L++ GAT++ A+S + AL+
Sbjct: 911 ----LDLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALE 966
Query: 898 KLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
L+S FD MDIQMP MDG++ TR IR++ R +L LP
Sbjct: 967 MLESTAEHFDMVLMDIQMPGMDGYQTTREIRKL-------------------PRHQL-LP 1006
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+A+TA + CL GM +++KPF+ L ++ K++
Sbjct: 1007 IIAITAHAMSDDIAACLAAGMQDHIAKPFDLNELTTKILSHHKAE 1051
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 119/179 (66%), Gaps = 2/179 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G L G++ G A + K ++ + K +AE+A+ AKS+FLA +SHEIRTPMNG+LG+
Sbjct: 501 GQLAGFL--GIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGL 558
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
L L+ ++ L Q DY + A K+L+ L+N++LD +KIEA KLEL+ F+L +L D
Sbjct: 559 LQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQD 618
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ +FS + KG+E+ V+ VPE +LGD R +Q++ NLVGN++KFT++G I + +
Sbjct: 619 IGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677
>gi|334132574|ref|ZP_08506331.1| Putative sensor protein [Methyloversatilis universalis FAM5]
gi|333442540|gb|EGK70510.1| Putative sensor protein [Methyloversatilis universalis FAM5]
Length = 1390
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/438 (29%), Positives = 207/438 (47%), Gaps = 67/438 (15%)
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLM-VCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F I+ + S DV L+ V DTGIG+ + R+F F QADSST+R
Sbjct: 781 NAVKFTERGEIVLRLRMIEDSPDVVLLRFEVRDTGIGLTEEQRARLFESFQQADSSTTRK 840
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
YGGTG+GL+I + L ELM G++ S P GSTF FTA G+ + K E LP
Sbjct: 841 YGGTGLGLAICRKLAELMDGEVGVESVPGQGSTFWFTARLGRSS--------RQKRELLP 892
Query: 698 -PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756
P +G + ++VD+ Y +G +++ S + A +
Sbjct: 893 HPDLRGRRVLIVDDN-------DYAREVIGNLLRSMSFFTEDRINAWSA----------- 934
Query: 757 IILVEKDCWISGEDSGFNAQLLDWK--------PNGHVFKL-----PKLILLATNISKDE 803
VE+ + E ++ LDW+ + L P+L+++ +D
Sbjct: 935 ---VEEVRRAATEGRPYDVVYLDWQMPIMDGIEAARQIRALGLAHPPRLVMVTAFGREDL 991
Query: 804 CDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKIL 863
+A+ G D V++KP+ AS++ +VL+ + R AG + + L G ++L
Sbjct: 992 LLQAREVGI-DDVLIKPVNASVLFDTTMRVLAGDESRVAGTAASDLPA-EMAALAGARVL 1049
Query: 864 VVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT 923
+V+DN +NR VA L + G ++ A AL ++ H +D MD+QMP MDG AT
Sbjct: 1050 LVEDNELNREVARELLSESGLVIDIAEDGAVALSRVAGQH-YDLVLMDMQMPVMDGLTAT 1108
Query: 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
RR+R M A LPI+AMTA+ + + CL GM+ +++K
Sbjct: 1109 RRMRDMPELAG--------------------LPIVAMTANAMREDVEACLDAGMNDHIAK 1148
Query: 984 PFEEENLYRELAKFFKSK 1001
P + ++L+ +L ++ + +
Sbjct: 1149 PIDPQDLWAKLLRWIRLR 1166
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 119/187 (63%), Gaps = 6/187 (3%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++ K AE A KS FLA +SHEIRTPMN I+GM L++ T+L+ QRD+ + Q+
Sbjct: 641 LKHAKELAEEATRMKSDFLANMSHEIRTPMNAIIGMSHLVMKTELTPRQRDFMKKIQLSS 700
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+ L+ +IN++LD +KIEA K+ +E + F L +LD+V +L EKS KG+EL + V
Sbjct: 701 QHLLGVINDILDFSKIEAGKMTVERIEFELEKVLDNVAALVIEKSAAKGLELMFDIDPAV 760
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT----MVKTDAKDETLLNGG 543
P+F++GDP R QI+ N N+VKFTERG I +++ + E + +++ + +D + G
Sbjct: 761 PDFLIGDPVRLGQILINYTNNAVKFTERGEIVLRLRMIEDSPDVVLLRFEVRDTGI--GL 818
Query: 544 TEEGVCR 550
TEE R
Sbjct: 819 TEEQRAR 825
>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
Length = 1252
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 204/405 (50%), Gaps = 43/405 (10%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
++ L ++DTGIGI L Q +F F QADSS SR YGGTG+GL+ISK LV LM G+I
Sbjct: 670 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 729
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTFSF V ++ ++ S+ + L ++VD+ + Q
Sbjct: 730 VESEFGCGSTFSFNVVVRNAEKRAIQN-----SQTFTRSNEKLSVLIVDDNDSARIILQG 784
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779
LG K++S ++AS K + D + D++ V D + G+D F +L +
Sbjct: 785 IAVSLGWQAKIASDAQEASLLVKQ---AHRDSTRYDVVFV--DWRMPGKDGLTFARELRE 839
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAG--GFADTVIMKPLRASMIAACLQQVLSTE 837
+ + LI++ T K+ D+ + D ++KP+ +M+ ++ V+ +
Sbjct: 840 LHSS-----VVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVESVVFGD 894
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+P H+ L+G +L+V+DN N++VA+ L++ GAT++ A+S + AL+
Sbjct: 895 ----LDLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALE 950
Query: 898 KLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
L+S FD MDIQMP MDG++ TR IR++ R +L LP
Sbjct: 951 MLESTAEHFDMVLMDIQMPGMDGYQTTREIRKL-------------------PRHQL-LP 990
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+A+TA + CL GM +++KPF+ L ++ K++
Sbjct: 991 IIAITAHAMSDDIAACLAAGMQDHIAKPFDLNELTTKILSHHKAE 1035
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 119/179 (66%), Gaps = 2/179 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G L G++ G A + K ++ + K +AE+A+ AKS+FLA +SHEIRTPMNG+LG+
Sbjct: 485 GQLAGFL--GIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGL 542
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
L L+ ++ L Q DY + A K+L+ L+N++LD +KIEA KLEL+ F+L +L D
Sbjct: 543 LQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQD 602
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ +FS + KG+E+ V+ VPE +LGD R +Q++ NLVGN++KFT++G I + +
Sbjct: 603 IGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 661
>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
Length = 832
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 203/403 (50%), Gaps = 44/403 (10%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D L + DTGIGI Q+++F F QADSST+R YGGTG+GLSISK L E+M G+I
Sbjct: 451 DSILRFEIRDTGIGISEEQQQKLFSRFSQADSSTTRKYGGTGLGLSISKRLTEIMGGEIG 510
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVTQ 719
S GSTF FT C E+ + LP G K + +VVD+ + +
Sbjct: 511 VTSETGKGSTFWFTV----C----LENSSKQSVVYLPTGDLKKQRILVVDDNDTNCNLLE 562
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
R I ++++S ++A + + +F IL D + D A+ +
Sbjct: 563 QIFTRWEIPYQVANSGEEALRVLADN--HKQQQFFTIAIL---DYQMPNMDGVELAKQIQ 617
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV--LSTE 837
P+ + +L++ ++ + + + K + GF+ + KP++ + + + L++V LS
Sbjct: 618 DNPD---YNDTRLVMFSSVVQRGDAKKMQKAGFSG-YLTKPMQQADLLSVLEKVSGLSGS 673
Query: 838 NKRQA--GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
++ +A R P + + +IL+VDD N++V L KFG V+ A + A
Sbjct: 674 DRSEAFVTRHTPAKKTQYNA-----RILIVDDVTTNQVVLQSLLSKFGIKVDKAKNGLEA 728
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L L++P +D +MD QMPEMDG+EATR IR N + +N S+
Sbjct: 729 LAALRTPANYDLVYMDCQMPEMDGYEATREIR------NTRNININHSI----------- 771
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
P++AMTA+ + ++CL+ GMD Y+SKP + L L ++
Sbjct: 772 PVVAMTANALQGDREKCLEAGMDDYISKPINAKALGESLERWI 814
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 98/148 (66%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FL+T+SHEIRTPMNG++GM LLLDT L Q +T + ++L+++IN++LD +KIE
Sbjct: 305 FLSTMSHEIRTPMNGVIGMTNLLLDTKLDEQQIRMTETTKNSAESLLSIINDILDFSKIE 364
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A K++LE + F+L +++DV ++ + KGI+L + + GDPGR RQ++ N
Sbjct: 365 AGKIDLELIDFDLGEVVEDVGAMLYFAAEQKGIQLVCPATPVMDLCYRGDPGRIRQVLNN 424
Query: 505 LVGNSVKFTERGHIFVKVHLAERTMVKT 532
LV N++KFTE G + V V + E+ + +
Sbjct: 425 LVSNAIKFTEDGEVAVYVTVDEKRLTDS 452
>gi|350551566|ref|ZP_08920780.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349796933|gb|EGZ50714.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1302
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 195/407 (47%), Gaps = 51/407 (12%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+E + L V DTGIGI Q+ +F PF QAD+S++R +GG+G+GLSI K LV+LM+G
Sbjct: 711 AELIWLEFSVRDTGIGILPEQQKELFTPFCQADNSSTRRFGGSGLGLSICKRLVDLMQGD 770
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S+P GS F F G + E +L P +GL +VVD+ P +
Sbjct: 771 IEVSSQPGQGSCFCFRIPLGLTAQTADE------VWNLAPALQGLAVLVVDDNPRARDIF 824
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVE----KDCWISGEDSGF 773
+ +L + + S A+ L + +D+ QP +IL++ D ++ D+
Sbjct: 825 KMYLEEFALHPVLVDS-------AQRALETLQDRSQPFALILIDAKLPNDAALTLIDT-- 875
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKD-ECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
LL P V LP++IL+A + S+D D A + TV+ +P+ S + +
Sbjct: 876 ---LLRTPP---VHPLPQIILIAPHPSEDVPADLAPLPAY--TVLAQPVTPSRLFDAIMT 927
Query: 833 VLSTENKRQAGRGVPNGSSFHQ-GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L+ A P H + G +IL+V+DN N+MVA AL++ V+ A +
Sbjct: 928 SLNDPAHVAAPHRQPTQPDPHDLQAIAGARILLVEDNQTNQMVACAALRRANFVVDIANN 987
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+ AL +L+ +D MDIQMP MDG E TRRIR A
Sbjct: 988 GEEALAQLEQSR-YDCVLMDIQMPRMDGLETTRRIR--------------------ADAR 1026
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
HLPI+AMTA + GM+ +++KP + + R L +
Sbjct: 1027 FTHLPIVAMTAHTLEENKQAARAAGMNDHLAKPIDFAQMLRTLCHWI 1073
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K E+D +E +AE A+ KS+FLA +SHEIRTPMN I+G+ L +D+ L + Q+ Y
Sbjct: 545 KTEEDLRLAKE---QAEVANKVKSEFLANISHEIRTPMNAIIGLSRLGMDSRLDALQQTY 601
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ L+ L+++VLD ++IEA +L LE LFNL +LDD+ +L K R K ++L
Sbjct: 602 LHEINASAETLLCLMDDVLDFSRIEAGQLTLEPTLFNLEDVLDDLWTLIRAKIRGKNLDL 661
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ +VP + GDP R +QI+ NL+GN++KFTE+G I + +
Sbjct: 662 LFARNPQVPHQLQGDPLRLKQILNNLLGNAIKFTEQGEILLAI 704
>gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01]
gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01]
Length = 632
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 188/387 (48%), Gaps = 78/387 (20%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KV++ +++ + RAE A+ KS+FLAT+SHEIRTPMNGI+G+ +LL DTDL Q+++
Sbjct: 222 KVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDTDLDPQQKEF 281
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ +L+ +I+++LD +K+EA K+ELE ++LR +LDDV+SL S K++ K ++L
Sbjct: 282 VEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQL 341
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539
+ +P V GD R +Q++ NL+ N+ + ER
Sbjct: 342 LSNIDPHLPIEVQGDATRLKQVLNNLLSNA------------IKFTER------------ 377
Query: 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599
G L L DG + +F+
Sbjct: 378 --------------GHVKLLVALSRLDGETAHIRFR------------------------ 399
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
V D+GIGI Q+ +F F QAD ST+R YGGTG+GL+I+ LV LM G+I
Sbjct: 400 --------VVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEI 451
Query: 660 SFVSRPQVGSTFSFT---AVFGKCKEY-----VFEDIKQSKSEDLPPGFKGLKAVVVDEK 711
S +GS F F+ AV Y V + K +E P +VV++
Sbjct: 452 QLTSELGLGSCFEFSIPVAVINAQSTYTDQLNVLDFPKAEDNEISPQDNDKPWVLVVEDT 511
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDA 738
V V + L +LG+ V +++ ++A
Sbjct: 512 IVNQKVVRIMLEKLGVRVSVANHGEEA 538
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 20/129 (15%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+LVV+D VN+ V L+K G V A + AL +L FD FMD QMP MDGF
Sbjct: 505 VLVVEDTIVNQKVVRIMLEKLGVRVSVANHGEEAL-QLCDQQPFDLIFMDCQMPVMDGFI 563
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
AT RIR+M H+PI+A++A+VI C GM+ +V
Sbjct: 564 ATERIRKMGEWGK-------------------HVPIIALSANVIKEDQQHCFDVGMNEFV 604
Query: 982 SKPFEEENL 990
+KP + L
Sbjct: 605 AKPVTKTRL 613
>gi|374335739|ref|YP_005092426.1| sensory box histidine kinase/response regulator [Oceanimonas sp.
GK1]
gi|372985426|gb|AEY01676.1| sensory box histidine kinase/response regulator [Oceanimonas sp.
GK1]
Length = 889
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 195/390 (50%), Gaps = 43/390 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI QE++F F Q D+ST+R YGG+G+GLSI + LV LM G I S P
Sbjct: 433 VRDTGIGIVPEQQEQLFQSFTQVDASTTRKYGGSGLGLSICRHLVALMDGSIGVHSVPGR 492
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGF-KGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTFS T ++ + D+ P F GLK +VVD+ P+ V L R G
Sbjct: 493 GSTFSVTLPLRPARDSL---------PDVTPEFAPGLKVLVVDDNPLALEVMSGMLRRAG 543
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
+V + +I+ A + ++ ++ L DC + E+ A+++ P H+
Sbjct: 544 FVVYTAMNIEAARTLLQH--------RGGELHLALIDCCLGRENGLELARIIRQHP--HL 593
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
LP ++L++ + ++ +A G + + KP+ S ++ CL +VL+
Sbjct: 594 EALP-IVLVSAFGRERPAEQMRALGL-EHYVSKPVTWSRLSVCLARVLNPAPAPSRPPLA 651
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
+ H+ L G +L+ +DN +N+ + L + G TV A + + A++ L S FD
Sbjct: 652 DTDTEHHRRRLSGCHVLLAEDNRLNQQLVIEYLSRVGVTVSLADNGRQAVE-LVSRQAFD 710
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
A MD+QMP +DG EATR+IR+++ + +PI+A+TA +
Sbjct: 711 AILMDLQMPILDGLEATRQIRRLQQHHD--------------------VPIIALTASAMR 750
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAK 996
+ D GM+ YVSKP + +LY+ L +
Sbjct: 751 SDRDSSYGSGMNAYVSKPVDRHDLYQALVQ 780
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 98/156 (62%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
K ++ A A AK+ FLA +SHEIRTPMN I+G ++LL T L Q DY ++
Sbjct: 264 KWRQASHSASALAQAKTDFLANMSHEIRTPMNAIIGFVSLLQQTALDPRQSDYLAKIRLS 323
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L+ LIN++LD K+EA KLELE + F+L L+ + LF++ S K +E+ + +
Sbjct: 324 SDNLLLLINDILDLTKVEAGKLELEDIAFDLNEQLERLAGLFADLSEQKQLEVIINKAPN 383
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VP+ + GDP R Q++TNLV N++KFTERG + + +
Sbjct: 384 VPDRLQGDPLRLGQVLTNLVSNALKFTERGEVVLGI 419
>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|440708940|ref|ZP_20889600.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
gi|439975681|gb|ELP51793.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
Length = 1268
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 204/405 (50%), Gaps = 43/405 (10%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
++ L ++DTGIGI L Q +F F QADSS SR YGGTG+GL+ISK LV LM G+I
Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTFSF V ++ ++ S+ + L ++VD+ + Q
Sbjct: 746 VESEFGCGSTFSFNVVVRNAEKRAIQN-----SQTFTRSNEKLSVLIVDDNDSSRIILQG 800
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779
LG K++S ++AS K + D + D++ V D + G+D F +L +
Sbjct: 801 IAVSLGWQAKIASDAQEASLLVKQ---AHRDSTRYDVVFV--DWRMPGKDGLTFARELRE 855
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAG--GFADTVIMKPLRASMIAACLQQVLSTE 837
+ + LI++ T K+ D+ + D ++KP+ +M+ ++ V+ +
Sbjct: 856 LHSS-----VVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKSVVFGD 910
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+P H+ L+G +L+V+DN N++VA+ L++ GAT++ A+S + AL+
Sbjct: 911 ----LDLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALE 966
Query: 898 KLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
L+S FD MDIQMP MDG++ TR IR++ R +L LP
Sbjct: 967 MLESTAEHFDMVLMDIQMPGMDGYQTTREIRKL-------------------PRHQL-LP 1006
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+A+TA + CL GM +++KPF+ L ++ K++
Sbjct: 1007 IIAITAHAMSDDIAACLAAGMQDHIAKPFDLNELTTKILSHHKAE 1051
Score = 145 bits (367), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 110/156 (70%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ + K +AE+A+ AKS+FLA +SHEIRTPMNG+LG+L L+ ++ L Q DY + A
Sbjct: 522 ELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSA 581
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
K+L+ L+N++LD +KIEA KLEL+ F+L ++ D+ +FS + KG+E+ V+
Sbjct: 582 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVLYDVTAD 641
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VPE +LGD R +Q++ NLVGN++KFT++G I + +
Sbjct: 642 VPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677
>gi|445497360|ref|ZP_21464215.1| signal transduction histidine-protein kinase BarA [Janthinobacterium
sp. HH01]
gi|444787355|gb|ELX08903.1| signal transduction histidine-protein kinase BarA [Janthinobacterium
sp. HH01]
Length = 1649
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 199/415 (47%), Gaps = 47/415 (11%)
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
++ A G + L VED+G+GI Q R+F F QAD+ST+R YGGTG+GL+IS+
Sbjct: 1133 DLHAPVPGDGYIALRFVVEDSGLGISEEQQARLFQAFAQADASTTRLYGGTGLGLAISQQ 1192
Query: 651 LVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
LV M G I S P VGS+F F+ + + ++ LPP G + +VVD+
Sbjct: 1193 LVRKMGGVIRVDSEPGVGSSFGFSIAVQLASD------QTPRAAPLPPSVLGKRVLVVDD 1246
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
+ + L+ LG+ + AS TA +D DI+L++ D D
Sbjct: 1247 SEAVRHMLKIQLSNLGLKARAV-----ASGTAAVAAMQLDDY---DILLMDADM----PD 1294
Query: 771 SGFNAQLLDWKPNGHVFKLPKLIL---LATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
L + + +P +++ A S+ ++++ F D KP ++
Sbjct: 1295 MDGIETLQRIAGDAELAAVPAVLMTTAYAREHSRQTGEQSRLMPFLD----KPAHPYLLR 1350
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
+ + L E+ + A R V S Q +RG +LVVDDN +N+ VA+ L++ G V+
Sbjct: 1351 SVVLAALGLESSQPAVRLVAAPSVAVQ-RIRGAHVLVVDDNSINQQVASEILQRAGVRVD 1409
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A S + A ++ + +DA MDIQMP+MDG++AT IR
Sbjct: 1410 LAGSGEEAA-RMSAAGRYDAVLMDIQMPDMDGYQATALIR-------------------- 1448
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
A D LPI+AMTA + + CL M+ YV+KP + + LY LA + + P
Sbjct: 1449 AAPDSARLPIIAMTAHAVAGYRERCLAMDMNDYVTKPIDPDTLYAVLATWVEPAP 1503
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 102/155 (65%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ + AEAA AKS FLA +SHEIRTPMN ILG L DL DY + G
Sbjct: 976 LEQARANAEAATRAKSDFLANISHEIRTPMNAILGFAGLGTHLDLPPQPLDYFRKIGRAG 1035
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
++L+ +IN+VLD +KIE+ KLELEA+ F+L L + LFS ++ +G+EL ++ + V
Sbjct: 1036 QSLLEIINDVLDFSKIESGKLELEALPFDLPDTLSQLADLFSWRAAERGLELVIWAAPDV 1095
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P +LGD R QI+ NLVGN++KFT RGHI ++V
Sbjct: 1096 PSNLLGDSLRLSQILVNLVGNALKFTARGHIELRV 1130
>gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 927
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 178/655 (27%), Positives = 276/655 (42%), Gaps = 139/655 (21%)
Query: 353 GAAIHIVKVEDDFHKMQELKV-------RAEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
G H V +++D ++E + +AEAA +AKS+FLAT+SHEIRTPMN ILGM
Sbjct: 374 GKITHFVGIKEDITSLKETEAHLELTQKKAEAASLAKSEFLATMSHEIRTPMNAILGMTE 433
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
LL +T LS QR + + G+ NL I++D+L
Sbjct: 434 LLGETQLSIEQRGFLSVCRSAGE---------------------------NLLQIINDIL 466
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH-------I 518
+ K + G+EL P R+I+ + G ++F R H I
Sbjct: 467 DI--SKVESGGLELQHV------------PFNLRRIVYD-AGEVIRF--RSHEKGLHQLI 509
Query: 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLI 578
F+ + E + + L+N L
Sbjct: 510 FIDESVPEWLLGDPARIRQILIN----------------------------------FLG 535
Query: 579 DAEGFQSNASIINMMASNGGS-EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F +I ++++ G V ++ V DTGIGIP S Q VF F Q DSST R
Sbjct: 536 NAIKFTEAGTIATVVSTTAGKGSQVEIVFRVIDTGIGIPESKQSVVFDAFKQLDSSTQRR 595
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
YGGTG+GL+ISK L +LM GQ+ S+ GSTF+ + + SKS P
Sbjct: 596 YGGTGLGLTISKKLADLMGGQLGLKSQEGHGSTFTLSLRLSRST-------GPSKSSAQP 648
Query: 698 -PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756
P F G+ ++ P++ + L R G + S + A+ ++ D
Sbjct: 649 APIFAGMHILIWHTHPIKRMNIEETLIRYGATLHHCSEVDPFLRCAQANHAATP----ID 704
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
++ + D D +++ + K+P LI D AK
Sbjct: 705 LLFIHFD----HADVDVLSEIKRLRAVSPWEKIPVLIY---GRCHDRSLPAKMLQQGVNF 757
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAA 876
+ +P+ ++ L ++ + + P+ +S ++L+VDD+ N ++A+
Sbjct: 758 LPEPVFPDVLLDELCRITQKSQQPEVDSK-PSRASL--------RVLLVDDSEDNLLLAS 808
Query: 877 GALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANE 935
LK V+ A + K A+++ Q+ FD MDIQMPEMDGF+AT IR E KA++
Sbjct: 809 TFLKSTPHIVQTATNGKQAVERFTQTSPRFDLILMDIQMPEMDGFQATAAIRAWE-KAHK 867
Query: 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+ PI+A+TA + +CL G GYVSKP + L
Sbjct: 868 KP----------------PCPIIALTAFAMSDDESKCLSAGFTGYVSKPISKARL 906
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 26/140 (18%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KIL+VDD N M +L K + A S AL L H F +D+ MP MDG+
Sbjct: 7 KILIVDDRPANSMALRVSLSKLDVQIIEAPSGNDALG-LMVEHDFALMLLDVNMPGMDGY 65
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH---ATFDECLKCGM 977
E + R E + +PI+ MTA IH A + G
Sbjct: 66 EVAKIARSWEQTKD--------------------IPIIFMTA--IHHDDAHRATGYQLGA 103
Query: 978 DGYVSKPFEEENLYRELAKF 997
Y+ KP + L ++ F
Sbjct: 104 ADYIDKPVDTTILLSKVKVF 123
>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
Length = 941
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 204/412 (49%), Gaps = 55/412 (13%)
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
G SE V +V DTGIG+ ++++F PF QAD ST+R YGGTG+GL+IS+ LVELM
Sbjct: 421 GDSEQVRFLV--RDTGIGMTAEERKKLFQPFSQADESTTRKYGGTGLGLAISRQLVELMD 478
Query: 657 GQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
GQI+ P G+ F F K + Q+ +++L KGL A+VVD+
Sbjct: 479 GQINCTGNPGEGAEFWFDLTLKKTAGTRI--LAQTPTQEL----KGLSALVVDDNQTNRE 532
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLT----SSEDKFQPDIILVEKDCWISGEDSG 772
+ + +N GI ++ + GLT + E+K D++L+ D + D
Sbjct: 533 LLTHQMNSWGIK-------QEGAEDGLKGLTILHRAVEEKRPFDMVLL--DMHMPHMDGL 583
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
A+L+ P + K+I+L + + + A+ G + + KP+R + L +
Sbjct: 584 DVARLIRKDP---TLERTKIIILTSVGIRGDAQLAREAGI-NIYLTKPVRQVDLYNSLVE 639
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGK------KILVVDDNGVNRMVAAGALKKFGATV 886
+++ G + Q L+ + ++L+ +DN +N+ VA G L K G V
Sbjct: 640 LMN-------GNYLEKKDLITQYHLKKELTTFNARVLLAEDNIINQQVAKGVLCKLGCRV 692
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
E A + A+ Q +D FMD QMP MDG+EAT +IR ME + Q
Sbjct: 693 ELATNGLEAVSAAQK-ESYDIVFMDCQMPRMDGYEATGKIRWMEDLKSGQ---------- 741
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
KR LPI+A+TA+ + ++CL GMD Y+SKPF +E + + L +
Sbjct: 742 --KR----LPIIALTANALSGDREKCLAAGMDDYISKPFGKEKIIKVLKHWL 787
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 110/148 (74%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A+AA AKSQFLA +SHEIRTPMNG+LGM + LD +L+ Q++ +T + G++L+ +I
Sbjct: 267 AQAASKAKSQFLANMSHEIRTPMNGVLGMAEMALDMNLTLEQQNAIETIKSSGESLLTII 326
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KLE+E + FNL A+++++ + + ++ KG+EL V +++ + + D
Sbjct: 327 NDILDFSKIEAGKLEIETINFNLPALIEEIAQILAHRAHAKGLELIVDIAETLHPDMSSD 386
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKV 522
P R RQ++TNL+ N++KFTE+G +++KV
Sbjct: 387 PSRIRQVLTNLLSNAIKFTEQGEVYLKV 414
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL----QSPHCFDACFMDI 912
L+G LVVDDN NR + + +G E A L L + FD +D+
Sbjct: 516 LKGLSALVVDDNQTNRELLTHQMNSWGIKQEGAEDGLKGLTILHRAVEEKRPFDMVLLDM 575
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
MP MDG + R IR+ D T +R + I+ +T+ I
Sbjct: 576 HMPHMDGLDVARLIRK----------------DPTLERTK----IIILTSVGIRGDAQLA 615
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
+ G++ Y++KP + +LY L + L
Sbjct: 616 REAGINIYLTKPVRQVDLYNSLVELMNGNYL 646
>gi|443475197|ref|ZP_21065154.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019984|gb|ELS33998.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1403
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/401 (31%), Positives = 198/401 (49%), Gaps = 54/401 (13%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI L +Q+++F PF Q D+ST+R YGGTG+GL+I K +V+LM G+I S
Sbjct: 902 VIDTGIGISLESQKKLFQPFTQVDASTTRKYGGTGLGLAICKQIVDLMGGEIGIDSEEGK 961
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F F F K + ++ + DL K ++ ++VD+ + Y L +
Sbjct: 962 GSQFWFQISFVKQSSAEIKQLEPRREVDL----KDVRVLIVDDSETNCKILTYQLTAWQM 1017
Query: 728 MVKMSSSIKDASSTAK--NGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
V ++K+AS + D++Q I+ ++ + GE G + PN
Sbjct: 1018 RV---DAVKNASHVISILQAAIAEGDRYQLAILDMQMPD-LDGESLGSQIKA---DPN-- 1068
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK------ 839
K KLI+L + ++ K GF + ++KP++ S + L QV+ST
Sbjct: 1069 -LKDTKLIMLTSLNQGGGINRVKELGF-EFYLVKPIKQSRLLDVLMQVISTNPHYQNPVT 1126
Query: 840 ---RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
R A R + S KIL+ +D+ +N+ VA L+ FG + A + K L
Sbjct: 1127 GALRTADRPITRTSKL--------KILIAEDSLINQKVALHQLRSFGYDADVAGNGKEVL 1178
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
L+ H +D MD QMPEMDG+E T+ IRQ++S ++ +
Sbjct: 1179 ALLECIH-YDIILMDCQMPEMDGYETTKAIRQLDSTKSK-------------------IA 1218
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
I+AMTA+ + D CL GM+ Y+SKP +E+L +LA++
Sbjct: 1219 IVAMTANAMKEDRDRCLASGMNDYLSKPIRKEDLAHKLAEW 1259
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 125/196 (63%), Gaps = 6/196 (3%)
Query: 339 FLFVIGLLVGYILYGAAI---HIVKVEDDFHKMQELKVRAEAADVA---KSQFLATVSHE 392
F+ +G VG LY A + ++ E + + ELK A++A KS FLAT+SHE
Sbjct: 697 FVTELGNQVGIALYQATLLEQETLRREQLYLQNVELKEARHQAEIATKMKSAFLATMSHE 756
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMN +LGM LL DT LS QRD+ +T +I G+ L+ LINE+LD +K+EA ++ELE
Sbjct: 757 IRTPMNAVLGMTGLLADTKLSPLQRDFVETVRISGENLLTLINEILDFSKLEANEMELEE 816
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
+ F+L +++V L + ++ K +ELA + VP ++ GD R RQI+TNLV N++KF
Sbjct: 817 ISFDLNTCVEEVTDLLAMLAQEKKLELAALIHQNVPTYLCGDVARLRQILTNLVSNAIKF 876
Query: 513 TERGHIFVKVHLAERT 528
T +G + +KV L E T
Sbjct: 877 TLQGEVIIKVSLKEET 892
>gi|365092001|ref|ZP_09329252.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
gi|363415738|gb|EHL22864.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
Length = 1033
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 199/408 (48%), Gaps = 44/408 (10%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V+DTGIG+ Q R+F F QAD+ST+R YGGTG+GL+IS+ L LM G++
Sbjct: 419 VLLRFEVQDTGIGLTSEQQSRLFRSFEQADTSTTRKYGGTGLGLAISRKLAGLMGGEVGV 478
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQY 720
S+ VGSTF FTA G + + LP P +G +VVD+ +
Sbjct: 479 QSQAGVGSTFWFTARLGLGTAH--------HAPLLPTPDLRGRHVLVVDDSEQARHILGE 530
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L R+ V +SS K+A + A+ ++E +P L D + G D GF+
Sbjct: 531 MLTRMSFTVTTASSGKEAVALAR----AAEQAGRP-CELAFLDWMMPGMD-GFDTH---- 580
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ + + P I++ D D+ + G ++ KP+ S + Q L + +
Sbjct: 581 RALASLQRPPHTIIVTAAGRDDVQDELQRAGLT-LMLSKPVSPSAMFDAAMQALGGQARS 639
Query: 841 QAGRG--VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
GR P ++ H + G ++L+VDDN +N+ V A L G V+ A + + ALD
Sbjct: 640 ADGRAAHAPRHAT-HLSAIAGARVLLVDDNDLNQQVGAELLSGAGLAVDVAHNGQVALDM 698
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L + +D MD+QMP MDG ATR +RQ + A+ LP+L
Sbjct: 699 L-AQTSYDLVLMDMQMPVMDGLTATRHLRQNPAWAD--------------------LPVL 737
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
AMTA+ + D C+ GM+G+++KP + + L+ L ++ + + A
Sbjct: 738 AMTANAMSHDRDLCIAAGMNGHLAKPIDPDALFATLLQWIRPRATGNA 785
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 104/151 (68%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ RAE A KS FLA +SHEIRTPMN ++GM L L TDL+ QRDY + Q G+ L+
Sbjct: 259 RARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALATDLTPRQRDYVEKIQRSGQHLL 318
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LIN++LD +KIEA KLE+E V F+LR +LD+V +L SEK +KG+EL V +P+ +
Sbjct: 319 GLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSEKCAHKGLELLFDVDPALPDHL 378
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
GDP R QI+ N N+VKFTERG I V+V
Sbjct: 379 RGDPLRLGQILVNYANNAVKFTERGEIIVRV 409
>gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 1169
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 186/416 (44%), Gaps = 73/416 (17%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ + + ++ + V DTGIGI Q R+F PFMQAD+ST+R +GG+G+GL IS+
Sbjct: 568 VRITPVESSASNLVMRFTVRDTGIGIDAETQARLFQPFMQADASTTRRFGGSGLGLMISR 627
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP--PGFKGLKAVV 707
LVELM G++ S P VGSTF F G+ + D P P + L+ ++
Sbjct: 628 QLVELMGGRLGVESAPGVGSTFWFEVPLGRTE------------PDAPDRPRARPLQVLI 675
Query: 708 VDEKP-VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
D+ P VR A+ A+ +A +S D + V ++
Sbjct: 676 SDDHPCVRDALW-------------------ATVSALGWSATSVDSRDAVLDAVLNHSFL 716
Query: 767 SGEDSGFNAQLLDWKPNGHVF--------KLP----KLILLATNISKDECDKAKAGGFAD 814
G D+ A LLDW P LP L+ L T D+ + G +
Sbjct: 717 QGPDA---AVLLDWGPERDGLATAQAICQALPASRRPLLFLLTQAPADQIRQRPDGDIIE 773
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
V+ KPL + + V +R P L G+++LVVDD+ +NR V
Sbjct: 774 AVLAKPLTPTPL---YDAVAKARGRRLGKIETPARVRRQPRRLAGRRLLVVDDSEINREV 830
Query: 875 AAGALKKFGATVECAASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
A GAT+ A + ALD LQ+ P D MD+QMP MDG EATRRIRQ+ +
Sbjct: 831 ARRIFSDEGATITLANDGQQALDWLQAHPDAVDLVLMDVQMPIMDGHEATRRIRQIPELS 890
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
LP++A+TA +H+ + GMD ++ KPFE E
Sbjct: 891 --------------------RLPVVALTAGALHSQEVLAQEAGMDDFIPKPFEVEQ 926
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 131/255 (51%), Gaps = 17/255 (6%)
Query: 289 IMYGDQNQDG-DMSLLHESELDFGDSFRKH--KMICRYHQKASTPWT--ALTTAFFLFVI 343
I+ DQ G D+ L E+ L + +R + + +CR ++ WT A+ A
Sbjct: 320 ILVPDQTSTGTDLRGLIENLLAHPEDYRSNINENVCRDGRRVWMSWTNQAIRDAHGAVSE 379
Query: 344 GLLVGYILYG---AAIHIVKVEDDFH-----KMQELKVRAEAA---DVAKSQFLATVSHE 392
L VG + A + ++ D + EL+ E A A+S+FLA +SHE
Sbjct: 380 ILSVGSDVTARLQAEEAVRRLNADLEQRVTERTAELRAAREQALRLAQARSEFLANMSHE 439
Query: 393 IRTPMNGILGMLALL-LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451
IRTPMN +LG+ LL +L D A+ G++L+ +IN++LD +KIE+ K+ +E
Sbjct: 440 IRTPMNAVLGLAYLLERQENLPEEACDLARKIYHSGQSLLGIINDILDVSKIESGKILIE 499
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
F L +LD++ ++ + +R K + LA+ +LGDP R QI+ NL N++K
Sbjct: 500 QTRFQLSQVLDNLATIMTTAARGKDLALAIVPPRDCDWPLLGDPLRLGQILINLTNNAIK 559
Query: 512 FTERGHIFVKVHLAE 526
FT+ G + V++ E
Sbjct: 560 FTDSGVVEVRITPVE 574
>gi|410664898|ref|YP_006917269.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Simiduia agarivorans SA1 = DSM 21679]
gi|409027255|gb|AFU99539.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Simiduia agarivorans SA1 = DSM 21679]
Length = 1158
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 194/409 (47%), Gaps = 56/409 (13%)
Query: 598 GSED--VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
GSED V + V+DTGIG+ + + ++F PF QAD ST+R +GGTG+GLSI K LV LM
Sbjct: 783 GSEDEQVDVEFAVKDTGIGLTEAQRAQLFNPFTQADGSTTRQFGGTGLGLSICKRLVNLM 842
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G I SRP GS F F + + D+ S+ P L+ ++VD+ P
Sbjct: 843 HGDIRVESRPGKGSDFIFNVKLTRAAK---TDLLHSRQ---IPALSSLRTLIVDDNPTAR 896
Query: 716 AVTQYHLNRLGIMVKMSSSIKDA-SSTAKNGLTSS---EDKFQPDI--ILVEKDCWISGE 769
V L + + S + A ++T +G D PD+ I K S
Sbjct: 897 EVISATARSLQLEASTADSARQALTATGASGANYDLILMDYAMPDMDGITASKAIRASQA 956
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
DS P +I++ + +D + D + KP+ S +
Sbjct: 957 DS------------------PPMIIMVSACDRDTIMTEENRAIVDGFVAKPVTQSRLYDA 998
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+ +VL T+ + A + + H L G ++L+V+DN VN+ VA G LKK E A
Sbjct: 999 ITRVLGTQPEPSAAKS--DDRPDHWPALDGARVLLVEDNPVNQKVAQGLLKKQLVVCELA 1056
Query: 890 ASAKAALDKL--QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
+ + A+D L + P + A MD++MP +DG++ATR IRQ KA ++
Sbjct: 1057 NNGQEAIDALLAKGPDFYQAVLMDVEMPLVDGYQATRFIRQ--RKAFDR----------- 1103
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
LP++AMTA + + CL+ GM+ ++ KP + LY+ LA+
Sbjct: 1104 -------LPVIAMTAHAMESDRQRCLEAGMNAFIHKPIKPAMLYQTLAE 1145
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 107/179 (59%), Gaps = 7/179 (3%)
Query: 353 GAAIHIVKVEDDFHK-------MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
G+ I+ V DF + +++ + +AE+A+VAK++FLA +SHEIRTPMN I+GM
Sbjct: 603 GSVRRILAVVSDFTQVVSQEKALKQARAQAESANVAKTEFLARMSHEIRTPMNAIIGMCH 662
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
L DT L Q+ Y + +L+ +INE+LD +KIEA KL+LE + F ++ D +
Sbjct: 663 LAQDTQLDDQQKAYLEHIDTAANSLLHIINEILDFSKIEAGKLDLEQLPFQFESLFDQLD 722
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
L S K+ K +EL +P ++GD R Q++TNLV N++KFT G + V+ L
Sbjct: 723 KLLSLKAAEKNLELLFQPDPDIPPMLVGDSLRLGQVLTNLVSNAIKFTAEGQVLVRARL 781
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 21/151 (13%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMP 915
L + L+VDDN R V + + A SA+ AL S +D MD MP
Sbjct: 881 LSSLRTLIVDDNPTAREVISATARSLQLEASTADSARQALTATGASGANYDLILMDYAMP 940
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
+MDG A++ IR S+A+ M I+ ++A E +
Sbjct: 941 DMDGITASKAIR--ASQADSPPM------------------IIMVSACDRDTIMTEENRA 980
Query: 976 GMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
+DG+V+KP + LY + + ++P A
Sbjct: 981 IVDGFVAKPVTQSRLYDAITRVLGTQPEPSA 1011
>gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4]
gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4]
Length = 559
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 155/298 (52%), Gaps = 64/298 (21%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S+FLA++SHEIRTPMNG+LGML L LDT L QRDY + AQ ++L+ALIN++LD +K
Sbjct: 168 SEFLASMSHEIRTPMNGVLGMLDLALDTRLDDEQRDYLEAAQNSAESLLALINDILDFSK 227
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
IEA +EL++ F LR L + ++F ++ KG+ + ++VP+ ++GDP R RQ++
Sbjct: 228 IEAGMVELDSQAFRLRKRLSTLHTMFVHRAEEKGLAFGFRIGEEVPDGLVGDPMRLRQVL 287
Query: 503 TNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGL 562
NL+ N+ + E+ V D + L
Sbjct: 288 VNLLDNA------------IKFTEQGRVYLDVQ--------------------------L 309
Query: 563 EAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQER 622
+AA G + AEG E + L V D+G GI S +E
Sbjct: 310 DAAQG---------ALPAEG-----------------EPILLRFSVTDSGPGILESHREH 343
Query: 623 VFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
+F F+QAD S SR + GTG+GL+I K L LM G I+ S P GSTF+FTA F +
Sbjct: 344 IFERFVQADGSLSRRHRGTGLGLAICKRLATLMGGDITVESAPGSGSTFTFTASFERA 401
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILV +D+ +N M L K G V L LQ FD MDI MP MDG
Sbjct: 424 RILVAEDHPMNLMFIEKLLAKQGYEVHTVTDGTEVLPALQRER-FDLVLMDIAMPVMDGI 482
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATR +RQ + ++ ++PI+AMTA + ++ L GMD Y
Sbjct: 483 EATRSVRQAGNMITDK-----------------NVPIIAMTAHAMKGDREQFLAAGMDDY 525
Query: 981 VSKPFEEENLYRELAKFFK 999
+ KP +NL L K +
Sbjct: 526 IGKPINSDNLCNMLLKHLQ 544
>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
Length = 1363
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 208/407 (51%), Gaps = 57/407 (14%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++ ++ +V L+ V DTGIGI + ++F PF QAD+ST+R YGGTG+GL+IS
Sbjct: 981 LLRVLPHRAADSEVELLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTIS 1040
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED--LPPGFKGLKAV 706
K LVELM G I S+P VGSTF FTA F +++S ++ LPP L +
Sbjct: 1041 KTLVELMGGTIWAESQPGVGSTFRFTARFKVAA------MERSPTQQLVLPP---DLHVL 1091
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
VVD++ + + +L + + ++ D + + D D++L + D
Sbjct: 1092 VVDDQAAHRQILRSYLESWHMRCEEAA---DGAQAIEKAQREHFDLAILDLLLPDTD--- 1145
Query: 767 SGEDSGFN--AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
GF+ QL P+ KL+LL + + + ++A GF+ ++KP+R S
Sbjct: 1146 -----GFDLAQQLRRLSPSM------KLVLLTAHHEQGQGERAVDAGFS-AYLLKPIRQS 1193
Query: 825 MIAACLQQVLS-TENKRQAGRGVPNGSSFHQGLLRG--KKILVVDDNGVNRMVAAGALKK 881
+ L + + E + QA + + ++ + +G K IL+ +DN VNR +A L+K
Sbjct: 1194 QLMDVLANISARKEPQPQAEQAPSSAAAAAEPPAQGERKPILLAEDNPVNRRLATLQLEK 1253
Query: 882 FGATVECAASAKAALDKLQ---SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
G +V + + A++++ +C MD QMPEMDG+EATR+IR++E+K+ +
Sbjct: 1254 LGYSVRTVDNGREAVEEMARRGQEYCL--VLMDCQMPEMDGYEATRQIRRLETKSGRRT- 1310
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
PI+A+TA+ + + CL GMD Y+SKP
Sbjct: 1311 -----------------PIIALTANALEGDREACLAAGMDDYLSKPL 1340
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 100/141 (70%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+F+A +SHEIRTP+N I+GM LL DT LS QR++ QT Q ++L+++IN++LD +
Sbjct: 844 KSEFVANMSHEIRTPLNAIIGMTELLQDTPLSERQREFVQTIQTSSQSLLSIINDILDFS 903
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA K+ LE V F+L ++++ + + +R KGI L FV +P ++GDP R RQ+
Sbjct: 904 KIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTIPRTLIGDPARLRQV 963
Query: 502 ITNLVGNSVKFTERGHIFVKV 522
+ NL+ N+VKFTE+G + ++V
Sbjct: 964 LLNLLSNAVKFTEQGEVLLRV 984
>gi|254411816|ref|ZP_05025592.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181538|gb|EDX76526.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1478
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 203/408 (49%), Gaps = 52/408 (12%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTGIGI + ++F F Q DSST+R YGGTG+GL+I K LVE+M G+I S
Sbjct: 683 LRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGLGLAICKQLVEMMGGEIGVES 742
Query: 664 RPQVGSTFSFTAVFGKC--------KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
+ VGSTF FT FGK + +F ++ S P +G + ++VD++P+
Sbjct: 743 QLGVGSTFWFTITFGKVPVGTEENESDRIFSNLPIS-----PESLQGKRVLIVDDRPINR 797
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFN 774
+ +Y L G+ V + D A N + +S + +P D+ L+ D + D
Sbjct: 798 QIVKYQLEARGMEVDEA----DNGIIALNAMQASAEAGKPYDVALL--DMKMPKIDGSTL 851
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
+L+ +P+ + KL+L+ + + D GFAD ++ KP++ S + LQ++L
Sbjct: 852 GRLILAEPD---WAKTKLVLMTSMHAGDSAQPLLKSGFADYLV-KPVKESQLLESLQKIL 907
Query: 835 STEN-----KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+ E Q+ P+ + L KIL+V+D +N + ++ G E A
Sbjct: 908 AAEIPATLFSTQSAIPDPSQPAPQSTCL---KILLVEDTPINLKLVRHQVQLLGHESESA 964
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ + ALDK+ + + +D MD QMP MDG++A R +R+ E GT +
Sbjct: 965 ENGQEALDKI-AKNDYDIVLMDCQMPVMDGYQAVRTLRERE---------------GTDR 1008
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
H ++ MTA + ++CL GMD Y+SKP +NL L ++
Sbjct: 1009 ----HTIVIGMTAYAMQGDREKCLAAGMDDYLSKPVMVKNLAPVLERW 1052
Score = 147 bits (372), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 101/143 (70%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
K+QFLA +SHEIRTPMNG+LGM LLL TDL+ Q D+ +T Q+ G+ L+ +IN++LD +
Sbjct: 529 KAQFLANMSHEIRTPMNGVLGMSELLLTTDLNPRQLDFVKTLQVSGEHLLGVINDILDFS 588
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA ++ L+ N+ L+DVL L S ++ K +ELA+ V VP ++GD GR RQI
Sbjct: 589 KLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQI 648
Query: 502 ITNLVGNSVKFTERGHIFVKVHL 524
TNLV NS+KFTE G + ++V +
Sbjct: 649 CTNLVSNSIKFTESGEVVIRVSV 671
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 20/123 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+V+D +N + ++ G + A + + AL+KL + + +D MD QMP MDG++
Sbjct: 1226 LLLVEDTPINLKLVQHQVRLLGHQWDSAENGEKALEKL-AENDYDIVLMDCQMPVMDGYK 1284
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
AT+ +RQ E GT H ++ MTA + D+C+ GMD Y+
Sbjct: 1285 ATQTLRQRE---------------GTNH----HTIVIGMTAYAMPGDRDKCIAAGMDDYL 1325
Query: 982 SKP 984
SKP
Sbjct: 1326 SKP 1328
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 28/151 (18%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP----HCFDACFMDI 912
L+GK++L+VDD +NR + L+ G V+ A + AL+ +Q+ +D +D+
Sbjct: 782 LQGKRVLIVDDRPINRQIVKYQLEARGMEVDEADNGIIALNAMQASAEAGKPYDVALLDM 841
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA--TFD 970
+MP++DG R I A+ D ++ MT+ +HA +
Sbjct: 842 KMPKIDGSTLGRLI--------------------LAEPDWAKTKLVLMTS--MHAGDSAQ 879
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LK G Y+ KP +E L L K ++
Sbjct: 880 PLLKSGFADYLVKPVKESQLLESLQKILAAE 910
>gi|410462156|ref|ZP_11315756.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984711|gb|EKO41000.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 1502
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 216/424 (50%), Gaps = 55/424 (12%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ +++ +GG + L V DTGIG+ R+F F QAD+ST+R +GGTG+GL+ISK
Sbjct: 909 VRLVSEDGG--EAVLRFEVRDTGIGLTEEQIARLFQSFSQADASTTRRFGGTGLGLAISK 966
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVV 708
L ELMRG++ S P GSTF FTA K ++ + LP P +G + +VV
Sbjct: 967 RLAELMRGEVGVESTPGAGSTFWFTARLRKS--------RKRRRVLLPDPDLRGRRVLVV 1018
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWIS 767
D+ V L + V+ ++S ++A ST L +++ K QP +++L+ D +
Sbjct: 1019 DDNESARTVLTDMLAAMSFSVEAAASGQEALST----LEAAQGKNQPFEVVLL--DWQMP 1072
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
G D A+ + + N P +++ T ++E + G + V++KP+ S++
Sbjct: 1073 GMDGLETAERIRARYNAP----PPHLVMVTAFGREEVLRGVEDGGFEAVLLKPVTPSLLF 1128
Query: 828 ACLQQVLS--TENKRQAGRGVPN---GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
L + L E +RQA P+ G + H G R +LVV+DN VN+ VA L +
Sbjct: 1129 DTLMRALGGFREEQRQA----PDDQAGQASHPGQGR---LLVVEDNEVNQQVARELLTQA 1181
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G TV+ A + + AL ++ +D FMD+QMP MDG AT IR++ A
Sbjct: 1182 GYTVDVAENGEVALAMVRR-TPYDLVFMDMQMPVMDGLAATIAIRKLPGFA--------- 1231
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
LPI+AMTA+ + ++CL GM+ +V+KP + + L+ L + K
Sbjct: 1232 -----------ALPIVAMTANAMLQDREKCLAAGMNDFVAKPIDPQALFAVLTAWIAPKA 1280
Query: 1003 LSGA 1006
GA
Sbjct: 1281 GQGA 1284
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 109/173 (63%), Gaps = 6/173 (3%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMN I+G+ L L T+L+ QRDY Q + L+ +IN++LD +
Sbjct: 769 KSDFLANMSHEIRTPMNAIVGLSHLALTTELTPRQRDYMGKIQQASQHLLGIINDILDFS 828
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KL +E F+L A+L++V +L EK+ KG+EL V+ VP+ ++GDP R QI
Sbjct: 829 KIEAGKLAIERADFDLSAVLENVAALIREKAEAKGLELLFDVAADVPQDLVGDPLRLGQI 888
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAE----RTMVKTDAKDETLLNGGTEEGVCR 550
+ N N+VKFTE G + ++V L +++ + +D + G TEE + R
Sbjct: 889 LVNYANNAVKFTEAGEVGIRVRLVSEDGGEAVLRFEVRDTGI--GLTEEQIAR 939
>gi|317484995|ref|ZP_07943878.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316923733|gb|EFV44936.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 1459
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 169/644 (26%), Positives = 282/644 (43%), Gaps = 148/644 (22%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT-DLSSTQRDYAQTAQICGKALIAL 433
AE A AKS FL+ +SHEIRTPMN ++GM + + D D + + L++L
Sbjct: 945 AEQASRAKSDFLSRMSHEIRTPMNAVIGMTTIAAASLDNRDKLTDCLGKIGLSSRYLLSL 1004
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD ++IE+ K+ + F+ R+ ++ + SL +++NK I + + V E G
Sbjct: 1005 INDILDMSRIESGKVSIINEEFDFRSFVEGISSLIYPQAKNKNIVFDLNIEGVVDERYRG 1064
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGT 553
DP R Q++ N++ N++KFT + VHL+ R + +D L + + R
Sbjct: 1065 DPLRLNQVLINILSNALKFTPE---WRSVHLSIRETRR--VRDRAYL-----QFIVR--- 1111
Query: 554 GQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613
+T G+E ++ F+ Q ASI + S GGS G+
Sbjct: 1112 ---DTGIGMEKGLLERIFEPFE--------QGGASISH---SYGGS------------GL 1145
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +S+ L+ LM G IS S P VGS
Sbjct: 1146 GLAISSN------------------------------LISLMNGHISVSSTPGVGS---- 1171
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPP---GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVK 730
E+V E + ++ P + ++ +VVD+ V T LNR+G+ +
Sbjct: 1172 --------EFVVELPLLTVPDNTPKQDVSLEDIRVLVVDDDLVTCEHTTLILNRIGVDAE 1223
Query: 731 MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGHVFKL 789
+S K A + K+ L + +N L+DWK P+ +
Sbjct: 1224 YVTSGKAAVTRVKSALQRH---------------------TCYNIALVDWKMPDMDGVET 1262
Query: 790 PK------------LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ +I+ A + ++ E +AG D I KP+ S++ L L
Sbjct: 1263 ARSIRRIVGPDTLVIIMSAYDWTEIEARAREAG--VDFFISKPIFQSVVQDVL---LKAT 1317
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+RQ+ +P + G++IL+V+DN +N +A L+ A+V+ A + + A++
Sbjct: 1318 RRRQSADTLP----VQKEDFAGRRILLVEDNEINMEIARTLLEFRNASVDGACNGQQAVE 1373
Query: 898 KLQSP--HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
+S + +DA MD++MP MDG AT+ IR G + D +
Sbjct: 1374 MFRSSPQNHYDAVLMDVRMPVMDGIAATQAIR------------------GLDRADAATV 1415
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
PILAMTA+ + K GM+ +++KP E E LY LA +F+
Sbjct: 1416 PILAMTANAFAEDIERSRKAGMNEHLAKPIEPETLYARLASYFR 1459
>gi|372487459|ref|YP_005027024.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359354012|gb|AEV25183.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 1306
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 174/647 (26%), Positives = 278/647 (42%), Gaps = 121/647 (18%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ + AE A AKS FLA +SHEIRTPMN I
Sbjct: 564 ELRRARATAEEATEAKSLFLANMSHEIRTPMNA-------------------------II 598
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G A +A+ E+ + + K+ A+ +L I++D+L FS+ IE +
Sbjct: 599 GMAHLAMKTELTPKQRDYVGKIHNAAI--SLLGIINDILD-FSK------IEAGKLSLEY 649
Query: 487 VPEFVLGDPGRFRQIITNLVGN-SVKFTERG-HIFVKVHLAERTMVKTDAKDETLLNGGT 544
VP F L D ++ N+ G +K E+G + V N GT
Sbjct: 650 VP-FSLED------VLDNVSGLLGLKANEKGLELLFNV------------------NAGT 684
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVT 603
G+ L+ L + +A F I + + + V
Sbjct: 685 PAGLVGDPLRLNQILTNL--------------VSNAIKFTERGQITLTTRPVDQAGDRVK 730
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L +ED GIG+ +F F QAD ST+R YGGTG+GLSIS+ LVE+M G I S
Sbjct: 731 LQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADS 790
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
GSTF FTA FG+ +E ++ LP GL+ +V D+ + L
Sbjct: 791 TLGEGSTFCFTAWFGRAEEL-------ARPRTLPASLAGLRVLVADDNGAAREILGEALR 843
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWK 781
L + + +S +A + LT + P +L W + G + +L
Sbjct: 844 HLDLRPDLVASGAEALAQ----LTEMQGGADPYRVLFLD--WQMPDLDGVSTLHKLQQAL 897
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
P + P+++++ T ++E + +++KP+ AS + L ++ +N
Sbjct: 898 PQA---QWPRVVMV-TAYDQEELRRQTENLGICGILVKPVSASTLFDVLVSLVDADN--- 950
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ- 900
P + Q + G +IL+ +DN +N+ +A L+ GA V A A++ L+
Sbjct: 951 -APATPLHIAAPQTRIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLER 1009
Query: 901 SP-HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
SP FD MD+QMP +DG++AT R+R + A HLPILA
Sbjct: 1010 SPDDSFDLVLMDLQMPHLDGYDATERLRCQQRFA--------------------HLPILA 1049
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
MTA + + CL GM+ +++KP + L LA++++ +P + A
Sbjct: 1050 MTAHAMPEERERCLAIGMNDHLAKPIDPTALAATLARWYEERPGASA 1096
>gi|452963793|gb|EME68850.1| hypothetical protein H261_16341 [Magnetospirillum sp. SO-1]
Length = 1583
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 205/413 (49%), Gaps = 54/413 (13%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G ++V L V DTGIG+ R+F F QAD+ST+R +GGTG+GL+ISK L ELM G
Sbjct: 997 GEDEVLLYFAVRDTGIGLTEEQMGRLFQSFEQADTSTTRKFGGTGLGLAISKKLAELMGG 1056
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAA 716
++ S GSTF FTA G K LP P +G +A+VVD+ A
Sbjct: 1057 EVGVESEYGKGSTFWFTARMGIG--------AARKRHLLPSPDLRGYRALVVDDNDNARA 1108
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCW----ISGEDS 771
V L+ + V+ S ++A K + D+ +P DI+L++ W + G D+
Sbjct: 1109 VLSDLLSSMTFRVRDLPSGREAVDEVKR----AADRGEPYDIVLLD---WRMPGMDGIDT 1161
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
+ + L+ P P+L+++ ++ ++ G D V++KP+ AS++ +
Sbjct: 1162 ARHLKALELNPA------PRLLMVTAYGREEVLNQIAEAGIED-VLIKPVSASILFDTVM 1214
Query: 832 QVL---STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
++ S E + AG P+ + + G +IL+V+DN +N+ VA L G VE
Sbjct: 1215 RMFGGPSAERRETAGELSPSQENL--ATIAGARILLVEDNDLNQEVATELLTDAGFLVEV 1272
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A AL+ +Q + +D MD+QMP MDG AT IR++ D
Sbjct: 1273 AGDGAVALEMVQR-NSYDIVLMDMQMPVMDGVTATMEIRRL------------GRFDA-- 1317
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LPI+AMTA+ + D C++ GM+ +++KP + + L+ L ++ +
Sbjct: 1318 ------LPIVAMTANAMQRDRDRCIEAGMNDFITKPIDPDQLWTALLRWIAPR 1364
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 111/193 (57%), Gaps = 6/193 (3%)
Query: 348 GYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
G + G + V+ + + K AE A KS FLA +SHEIRTPMN I+GM L
Sbjct: 817 GAVWAGFFQDVTAVKQAEAALTQAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLA 876
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
L TDL+ Q DY + Q G+ L+ +IN++LD +KIEA KL +E V F+L +LD++ L
Sbjct: 877 LKTDLTPRQHDYVKKIQGAGQHLLGIINDILDFSKIEAGKLAVERVDFDLDKMLDNIAGL 936
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+EK+ K +EL + VP ++GD R QI+ N N+VKFTE+G I + + ER
Sbjct: 937 LTEKTGAKNLELVFDIPSDVPRTLIGDSLRLGQILINYANNAVKFTEKGEIDIIARVKER 996
Query: 528 TMVKTDAKDETLL 540
+DE LL
Sbjct: 997 ------GEDEVLL 1003
>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 949
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 113/156 (72%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AEAA+VAKSQFLA +SHEIRTPMNGI G L LL T+LS Q ++ + A+ + L+
Sbjct: 317 KEQAEAANVAKSQFLANMSHEIRTPMNGIFGFLELLQTTELSLEQEEFIREAKSASEILL 376
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA+KL +E++ FNLR ++D +SL S K+ KG+E+ V + D VPE V
Sbjct: 377 YIINDILDFSKIEAKKLVMESIKFNLRTTIEDAVSLLSHKAVEKGLEIYVMIKDGVPEEV 436
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+GDP R RQI+ NL+ N+VKFTE G I V V E+
Sbjct: 437 IGDPSRIRQILNNLISNAVKFTESGDISVSVDYEEK 472
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 195/404 (48%), Gaps = 49/404 (12%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V+DTGIGI ++F F QAD+ST+R YGGTG+GL+IS LV++M G+++ S
Sbjct: 483 VKDTGIGIRKEDIHKLFQSFNQADASTTRKYGGTGLGLAISSELVKMMDGEMNVESEFGK 542
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLP----PGFKGLKAVVVD-EKPVRAAVTQY-H 721
GSTF F ++K +K P KG+ +VVD R ++ Y H
Sbjct: 543 GSTFKFNV-----------NLKIAKRSSEPKFDLEKLKGVNILVVDGNDNNRESIKSYFH 591
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
+ + KDA + +S K + D+ +V D +S + A L
Sbjct: 592 GADINLF-----EAKDAGDAITTVIKNSNSKNKIDVAIV--DYRMSDMTAYELATTLKSI 644
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
P + K KLILL ++ + AK GF+ + + KP+R + +C+ +L E +
Sbjct: 645 P---IAKDIKLILLTSSAKIVDSKAAKEYGFS-SYLSKPIRKDDLISCIAILLGLEEDHE 700
Query: 842 AGRGVPNGSSFHQGLLRGK-KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ V + + K KIL+V+DN +NR + G LK T + A + A+ K
Sbjct: 701 EEQEVVIKHTVKEIKHSLKPKILLVEDNEINRKIVIGILKSREMTCDIAVNGSEAV-KAV 759
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+D FMD QMP MDG+E+T RIR++E G K H I+AM
Sbjct: 760 LERDYDVVFMDCQMPVMDGYESTARIRELE---------------GEKK----HTTIIAM 800
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
TA+ + ++C++ GMD Y+SKP E ++ + K++ ++
Sbjct: 801 TANAMEGDSEKCIQAGMDYYISKPINFELMFSMIESNTKTREIT 844
>gi|374813251|ref|ZP_09716988.1| sensory transduction histidine kinase [Treponema primitia ZAS-1]
Length = 903
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 125/404 (30%), Positives = 197/404 (48%), Gaps = 48/404 (11%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
T+ + V D+GIGI Q ++F F QADS+TSR +GGTG+GL+ISK +VE+M G I V
Sbjct: 538 TIRIEVSDSGIGISEDQQRKLFTSFEQADSNTSRRFGGTGLGLAISKRIVEMMDGHIWIV 597
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVTQY 720
S GSTF+FT + E K+ L PG +K ++ + VD+ P + Y
Sbjct: 598 SELDKGSTFAFTIQAKRGSE---------KNGLLRPGINWKNIRLLAVDDDP---DICAY 645
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779
L+ + + D ++ L E K DI V D + G D F+ ++ +
Sbjct: 646 FLD----LAQQLDLHCDTAAGGTEALAMIEQKGPYDIYFV--DWKMPGMDGVEFSRRVKE 699
Query: 780 WKPNGHVFKLPK--LILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
P+ +I+++ D+A+ G D + KPL S IA C+ + L E
Sbjct: 700 RSSGTSAVSQPESVVIMISAVEWSTVMDEARQAG-VDKFLSKPLFPSAIADCINECLGAE 758
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
N N H G +L+ +D +NR + L+ ++ A + + A++
Sbjct: 759 NVL-----AENQQPGHIDRFEGSHLLLAEDIDINREIVLALLEPTAIEIDTAENGREAVE 813
Query: 898 KLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+P +D FMDIQMPEMDG+EATRRIR +++K ++ +P
Sbjct: 814 MFSGNPDKYDMIFMDIQMPEMDGYEATRRIRALDNKRAKE------------------IP 855
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
I+AMTA+V + CL+ GM+G+V KP + + +L F ++
Sbjct: 856 IIAMTANVFREDVERCLEAGMNGHVGKPLAMDEVLTKLRTFLRN 899
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 371 LKVRAEA--ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA-QICG 427
++ R EA + AK FLA +SHE+RTPMN I+GM + + ++DY + +
Sbjct: 373 IQAREEALSSTKAKGDFLANMSHEMRTPMNAIIGMTN-IAKSSADPEKKDYCLSKIEDAS 431
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+ +IN+VLD +KIEA K EL FN IL V+++ + + K V + +
Sbjct: 432 NHLLGVINDVLDMSKIEANKFELSFTEFNFEKILQRVVNVNNFRVEEKEQNFTVKLDKNI 491
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFT 513
P ++GD R Q+ITNL+ N++KFT
Sbjct: 492 PRTLIGDDQRLAQVITNLLSNAIKFT 517
>gi|359782604|ref|ZP_09285824.1| periplasmic sensor hybrid histidine kinase [Pseudomonas
psychrotolerans L19]
gi|359369424|gb|EHK69995.1| periplasmic sensor hybrid histidine kinase [Pseudomonas
psychrotolerans L19]
Length = 924
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 163/654 (24%), Positives = 274/654 (41%), Gaps = 133/654 (20%)
Query: 357 HIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ 416
H + D ELK K++FL+ +SHEIRTPMNG+LGM LL T LS+ Q
Sbjct: 381 HFTRTRDRAANHAELK--------GKAEFLSRISHEIRTPMNGVLGMTELLQGTALSAKQ 432
Query: 417 RDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKG 476
RDY QT G L+ LINE++D ++E+ ++ELE V F+L A+LDD L +F ++
Sbjct: 433 RDYVQTIHSAGAELLNLINEIIDITRLESGQIELEEVTFDLNALLDDCLDIFRPRAEEHR 492
Query: 477 IELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKD 536
+EL F+ +V P RF +G+ + + + ++L E +T+ +
Sbjct: 493 VELLSFIQPQV-------PRRF-------IGDPTRLRQ-----ILLNLLENAFQRTE-EG 532
Query: 537 ETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASN 596
E LL EE TGQ
Sbjct: 533 EILLVISLEEA-----TGQ----------------------------------------- 546
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
L + V+D+G + + ++ + + GL I++ LV LM+
Sbjct: 547 ----PPRLRISVQDSGTPLDAALSRQLLSTHLDRRDFLASDTDSLDFGLIIARQLVLLMQ 602
Query: 657 GQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
G + + GS+F + ++ + V D P + ++ +VVD+ +
Sbjct: 603 GDFGIQNNAEGGSSF-WISLPIPAQALVLS----RGDSDYP--LQDVRVLVVDDNELCRK 655
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISG------- 768
V Q + G+ ++S ++A + + T S + D++L+++ ++G
Sbjct: 656 VLQQQCSAWGMQAVTAASGREALALLR---TQSHLREYFDVVLLDQQMPGMTGMQLAARI 712
Query: 769 -EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
ED N LL +++ T +S V+ KP+ +
Sbjct: 713 NEDENLNHDLL--------------LIMLTGLSNAPSKVIARNAGIKRVLAKPVAGYTLR 758
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
A L LS +R + P G+ ++LV +DN ++ V G LKK G +
Sbjct: 759 ATLADELSRRGQRVSE---PEPEEQPSGIPSDFRVLVAEDNSISVKVIRGMLKKLGVEPD 815
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
++ A +KLQ + +D MD +MP +DGF ATRR+R E + +
Sbjct: 816 TVSNGLEAFEKLQQ-NTYDLILMDCEMPLLDGFGATRRLRAWEQQNHRS----------- 863
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
P++A+TA ++ D + GMDG++ KP E L REL ++ +
Sbjct: 864 ------RTPVVALTAHILAEHKDRAQEAGMDGHMGKPIELSQL-RELLLYWAER 910
>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
Length = 1177
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 205/413 (49%), Gaps = 47/413 (11%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ +M G++ L + DTGIGI Q R+F PF QAD STSR +GGTG+GLSI +
Sbjct: 659 VKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLSICR 718
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LVELM G I S P GS F FT E + + + L P F + +VVD
Sbjct: 719 NLVELMGGTIGLESAPGRGSRFWFT--------LPLEPLPGASAPAL-PDFSHRRVLVVD 769
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISG 768
+ + ++L G+ V + + TA N L ++ + +P DI+L+ D +
Sbjct: 770 DNATNRVILSHYLTHWGLEVDEA----ERGDTALNRLRTALHESRPYDIVLL--DLHMPY 823
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D A+ ++ +P + P+L+L + ++ + + +A G A + ++KP+R S++
Sbjct: 824 MDGHELARAMNAEPG--LKDTPRLLLSSGGLTGEA--ELRALGIARS-LLKPVRQSLLFN 878
Query: 829 CLQQVL---STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+ +VL +T +R A + ++ G+++LVV+DN VN+ V L KFG
Sbjct: 879 AIAEVLAAKATVQRRPAAKTETVLPAYE-----GRRVLVVEDNRVNQKVIVAMLGKFGIV 933
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
+ A + +AAL+ L + +D MD QMP + G+EAT +R E M GG
Sbjct: 934 PDVADNGQAALE-LLARSSYDLVLMDCQMPVLGGYEATGELRARE------MSAGGRRT- 985
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
P++A+TA ++CL GMD Y+SKP + L L ++
Sbjct: 986 ----------PVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERWL 1028
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 107/152 (70%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMNG+LGML LL DTD+S Q D +TA ++L+ +IN +LD +
Sbjct: 521 KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA K+E+E FNL ++++V +L + ++ +KG+EL F+ +P +GDP R RQI
Sbjct: 581 KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTD 533
+TNL+GNSVKFTERG + VKV E +TD
Sbjct: 641 LTNLLGNSVKFTERGEVSVKVMQGEAGAKRTD 672
>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 956
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 132/410 (32%), Positives = 207/410 (50%), Gaps = 47/410 (11%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGI + +F F QAD+ST+R +GGTG+GL+IS+ L ++M G++
Sbjct: 376 VVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFGGTGLGLAISRQLAQMMEGEVGV 435
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF FTA K I ++ L G + +VVD+ + Q
Sbjct: 436 DSTFGQGSTFWFTARLQKG-------ISTGRARVLRSELYGKRVLVVDDNDSARTLLQTM 488
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFN-AQLLD 779
L L ++ + DA A + + S QP +I+ ++ W SG AQ L
Sbjct: 489 LQDLNLVAEAV----DAGPAALDAVYKSAQAGQPFEIVFLD---WQMPGMSGVELAQRLQ 541
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS-TEN 838
P + P+L+L+ ++ A+A G TV++KP+ ASM+ + + LS
Sbjct: 542 ALP---LEVTPRLVLVTGYGREEVLSSAEAAGI-QTVLVKPVSASMLFDSVARELSGAPA 597
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
QA +P G + LRG ++L+V+DN +N+ VA L+ G V A + + A+++
Sbjct: 598 PVQAFGTMPPGEGLAR--LRGARVLLVEDNELNQEVATELLQGVGVEVAVAHNGQEAVEQ 655
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+Q+ FD MD+QMP MDG ATR IR+ E+ ++G LPI+
Sbjct: 656 VQAGR-FDLVLMDMQMPVMDGLTATRTIRRDEA------LSG--------------LPII 694
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK---PLSG 1005
AMTA+ + + + CL GM+ +++KP E E+L+ L + + PL+G
Sbjct: 695 AMTANAMASDREACLAAGMNDHLAKPIEPEHLFASLLHWLAGRTPAPLAG 744
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 102/155 (65%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+AE A+ AKS FLA +SHEIRTPMN I+GM L+ T+L+ QR Y Q + L+ +
Sbjct: 218 QAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQKTELNERQRGYLNKIQSSSQHLLGI 277
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA KL +E + F L +LD++ L +K+ +KG+EL V +VP ++G
Sbjct: 278 INDILDYSKIEAGKLGIEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPLQLVG 337
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
DP R QI+ N N+VKFTERG I ++V + E +
Sbjct: 338 DPLRLGQILVNYANNAVKFTERGEIDIRVRVQEES 372
>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
Length = 1513
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 195/400 (48%), Gaps = 41/400 (10%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E V + V DTGIGIP + +F F QAD+ST+RHYGGTG+GL+ISK LVELM G+I
Sbjct: 1010 ERVQVRFSVRDTGIGIPADKVDLLFQKFTQADASTTRHYGGTGLGLAISKNLVELMGGEI 1069
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
SR VGS F FT F K+ E + S DL KG++A+VVD+ +
Sbjct: 1070 GVHSREGVGSEFWFTLDF--AKQPGGEGARGGDSRDL----KGVRALVVDDNATNREILL 1123
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L G+ V+ ++ D S A L ++ + P + V D + G D ++L
Sbjct: 1124 ARLTGWGMAVE---AVADGPS-ALEVLRAASARGVPFEMAV-LDMQMPGMDGETLGRILR 1178
Query: 780 WKPN-GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
P G + KL+++ + + + + + GF+ + KPLR + L VL+ E
Sbjct: 1179 EDPKLGGL----KLVMMTSMGQRGDAHRMEEIGFS-AYLTKPLRHQDLRDSLTAVLAGEK 1233
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ + L R + L+V+DN VNR VA G L++ G + A AL
Sbjct: 1234 QPLV------TRHRIRELRRRGRALLVEDNEVNRQVALGMLRRLGLRADVAEDGLGALRA 1287
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L+ +D MD+QMP MDG E TR IR S+A +PI+
Sbjct: 1288 LEEGD-YDLVLMDVQMPGMDGVETTRAIRAPGSRARNP-----------------RVPIV 1329
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
AMTA + + CL+ GMDG++SKP + L L+ +
Sbjct: 1330 AMTAHAMQGDRERCLEAGMDGFLSKPLDFSTLAESLSPWL 1369
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 154/291 (52%), Gaps = 45/291 (15%)
Query: 265 LGQLAGNQAI-LVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRY 323
+G+L G + LV+ D+ + L G Q E LDF + +R R+
Sbjct: 756 MGELEGRSFLDLVHPEDLPATLEALGRLGGQ----------EEVLDFVNRYRCKDGTYRW 805
Query: 324 HQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQE------------- 370
+ S P+ G ++Y A I + ++QE
Sbjct: 806 IEWRSRPF----------------GTLIYAVARDISDRVETEARLQEANRRLEEQTALAR 849
Query: 371 -LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
+ ++A+ A+ AKS FLA +SHEIRTPMNGILGM ALLLDTDL+ QR + + Q +
Sbjct: 850 SMALQADQANRAKSDFLANMSHEIRTPMNGILGMAALLLDTDLTPEQRHFGEIVQASAEN 909
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ L+N++LD +KIEA +L LE V F+LR++ DDV + + +++ KG+E V VP
Sbjct: 910 LLGLLNDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGLEFLGSVEPDVPS 969
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA----ERTMVKTDAKD 536
+ GDPGR RQ++TNL+GN+VKFT RG + V+ ER V+ +D
Sbjct: 970 ALRGDPGRLRQVLTNLLGNAVKFTHRGEVVVRARRVSESPERVQVRFSVRD 1020
>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus str. Bath]
Length = 1177
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 205/413 (49%), Gaps = 47/413 (11%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ +M G++ L + DTGIGI Q R+F PF QAD STSR +GGTG+GLSI +
Sbjct: 659 VKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLSICR 718
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LVELM G I S P GS F FT E + + + L P F + +VVD
Sbjct: 719 NLVELMGGTIGLESAPGRGSRFWFT--------LPLEPLPGASAPAL-PDFSHRRVLVVD 769
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISG 768
+ + ++L G+ V + + TA N L ++ + +P DI+L+ D +
Sbjct: 770 DNATNRVILSHYLTHWGLEVDEA----ERGDTALNRLRTALHESRPYDIVLL--DLHMPY 823
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D A+ ++ +P + P+L+L + ++ + + +A G A + ++KP+R S++
Sbjct: 824 MDGHELARAMNAEPG--LKDTPRLLLSSGGLTGEA--ELRALGIARS-LLKPVRQSLLFN 878
Query: 829 CLQQVL---STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+ +VL +T +R A + ++ G+++LVV+DN VN+ V L KFG
Sbjct: 879 AIAEVLAAKATVQRRPAAKTETVLPAYE-----GRRVLVVEDNRVNQKVIVAMLGKFGIV 933
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
+ A + +AAL+ L + +D MD QMP + G+EAT +R E M GG
Sbjct: 934 PDVADNGQAALE-LLARSSYDLVLMDCQMPVLGGYEATGELRARE------MSAGGRRT- 985
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
P++A+TA ++CL GMD Y+SKP + L L ++
Sbjct: 986 ----------PVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERWL 1028
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 107/152 (70%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMNG+LGML LL DTD+S Q D +TA ++L+ +IN +LD +
Sbjct: 521 KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA K+E+E FNL ++++V +L + ++ +KG+EL F+ +P +GDP R RQI
Sbjct: 581 KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTD 533
+TNL+GNSVKFTERG + VKV E +TD
Sbjct: 641 LTNLLGNSVKFTERGEVSVKVMQGEAGAKRTD 672
>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1548
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 184/648 (28%), Positives = 277/648 (42%), Gaps = 135/648 (20%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ K AE A KS FLA +SHEIRTPMN I
Sbjct: 733 ELRRAKEMAEEATRLKSDFLANMSHEIRTPMNA-------------------------II 767
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G A +AL E+ R RK+ A +L IL+D+L FS+ K L V ++
Sbjct: 768 GMAHLALKTELDPRQADYVRKIR--ASGQHLLGILNDILD-FSKIEAGK---LTVENTEF 821
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
E VL + NLV S K +G FV + A +L G
Sbjct: 822 ELETVL-------DTVANLV--SEKAATKGLEFV---------LDVAANVPPVLRGDP-- 861
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
R G N N+ KF + +I++ G DV L
Sbjct: 862 --LRLGQILINYA---------NNAVKFT--------EHGEIVIHVETLETGDTDVLLRF 902
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIG+ + R+F+ F QAD+ST+R YGGTG+GL+I+K L +LM G + S P
Sbjct: 903 AVRDTGIGLTDEQKARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPG 962
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GSTF FTA G + + LP +GL+ +VVD+ P V + L +
Sbjct: 963 GGSTFWFTARLG---------LGSGRRALLPRIDLRGLRVLVVDDNPQARMVLAHMLEGM 1013
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG- 784
M+ D TA + L + D D+ F LDW+ G
Sbjct: 1014 TFRPVMA----DGGETALDLLREARDA-----------------DTPFGMVFLDWQMPGM 1052
Query: 785 -------HVFKL-PKL-ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
++ L P L + + T ++E A G V++KP++ S++ ++L
Sbjct: 1053 DGLETARNIRTLAPDLPVAIVTAHGREEIFAASEGVGVSAVLVKPVQPSLLFDTAMRLLG 1112
Query: 836 TENKRQAGRGVPNGS--SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ P + + G +RG ++L+V+DN +NR VA G L + G + A
Sbjct: 1113 AVHPAPRAAVPPPDTRPAMLDG-VRGSRVLLVEDNELNREVALGLLAEAGLVPDAAEDGA 1171
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A+ ++ +D MD+QMP MDG+EATR IR+ R+
Sbjct: 1172 QAV-RMVMEGDYDLVLMDVQMPVMDGYEATRIIRR--------------------SREAD 1210
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LPI+AMTA+ + + + CL GM+ +V+KP + + L+ L ++ +
Sbjct: 1211 SLPIVAMTANAMRSDREACLAAGMNDHVAKPIDPDELFAALIRWLPRR 1258
>gi|383756437|ref|YP_005435422.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381377106|dbj|BAL93923.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 978
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 168/619 (27%), Positives = 255/619 (41%), Gaps = 114/619 (18%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMN I+G L LI D
Sbjct: 467 KSAFLANMSHEIRTPMNAIIG---------------------------LTHLIARATDDP 499
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
R +++ +L IL+D+L L ++ +E A F D++ VL
Sbjct: 500 LQRERLRKVDGAAAHLLQILNDILDLSKIEAGKLRLEPADFSRDELISRVL--------- 550
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK--DETLLNGGTEEGVCRSGTGQFNTL 559
++V + + + H+ ER ++ DA+ + L+N L
Sbjct: 551 --DVVEAAARAKGLELVLDTDHVPER--LRGDARLLSQALIN-----------------L 589
Query: 560 SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
G W + + ++ +G + + L V+DTGIGI
Sbjct: 590 LGNAVKFTERGWVRLR--------------AELLRRDG--QRLLLRFEVQDTGIGIAPEH 633
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
Q R+F PF QADS+ +R +GGTG+GL++++ + ELM G SRP GSTF F A +
Sbjct: 634 QARLFTPFEQADSTRTRRHGGTGLGLALTRHIAELMGGSADASSRPGEGSTFGFNAWLEE 693
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
+ + LP L+A+VVD+ P L LG+ V + D
Sbjct: 694 A-----DALPSQAPMRLP---AALRALVVDDLPEALDAIAMQLQGLGVAVDTAG---DGP 742
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNI 799
+ L E D+ ++ D + G D Q L G + P L++ A +
Sbjct: 743 EALQRVLAEREQGRGYDVFVI--DWMMPGWDGLETLQRLRAADRGG--RGPALLISAYDA 798
Query: 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRG 859
+ +AG A V+MKPL S + L ++L +A + G
Sbjct: 799 PALQAQAGRAGYGA--VLMKPLTPSALHDALARLLRPAPTAEAAPATDEAFVRLRERCAG 856
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+++LV +DN VN+ VA L++ V AA + A+D L S FD MD+QMP +DG
Sbjct: 857 RRVLVAEDNPVNQEVAIALLEEARLNVVVAADGQRAID-LASSQSFDLVLMDVQMPGIDG 915
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+A R IR + LPI+AMTA+ D CL GMD
Sbjct: 916 LDAARAIRSRLGRG---------------------LPIVAMTANAFGEDRDACLAAGMDD 954
Query: 980 YVSKPFEEENLYRELAKFF 998
+V+KP + LY L ++
Sbjct: 955 HVAKPVDPPRLYETLLRWL 973
>gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
Length = 1275
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 201/408 (49%), Gaps = 46/408 (11%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S DV + VEDTGIG+ R+F F Q DS+T+R YGGTG+GL+I++ L +LM G+
Sbjct: 906 SNDVLIRFEVEDTGIGVAPENLPRLFQVFEQGDSTTTRRYGGTGLGLAITRRLAQLMGGE 965
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
S VGSTF TA G+ ++ + P +G +A+V+D+ PV +
Sbjct: 966 AGVESTLGVGSTFWLTARLGR--------VRAATGRHRIPSLRGKRALVIDDMPV-TRLV 1016
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQL 777
Q L R M+ + + A + ++E + +P D++LV D + G D
Sbjct: 1017 QSQLLR---MIGLEGEGAAGGAVALQEIEAAEREGKPYDLVLV--DLLMPGMDGFETLAR 1071
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
L P + + P IL+ + + + A GFA+ ++KPL SM+ CL + L+
Sbjct: 1072 LRALP---LRQQPLAILVTASSDPEIIEDATRMGFAEA-LLKPLSPSMLNDCLVRHLADI 1127
Query: 838 NKRQAGRGV---PNGS---SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+ G + P GS S + +IL+V+D +N+ VA L++ G ++ AA+
Sbjct: 1128 PGQTGGMPLADKPAGSDAESILKADFSSARILLVEDEPINQDVALAILEEIGWKIDVAAN 1187
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+ +L L + + MD+QMP MDG ATR+IR++
Sbjct: 1188 GRESL-ALVEANDYQVVLMDMQMPVMDGLAATRQIRRLPGHET----------------- 1229
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LPI+AMTA+ D C++ GM+ ++SKP E E LY L K+ +
Sbjct: 1230 ---LPIIAMTANAFSEDRDRCVEAGMNDFLSKPVEPEVLYAMLLKWLR 1274
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMN I+G+ +L T S Q D L+ +IN++LD +KIE
Sbjct: 763 FLANMSHEIRTPMNAIVGLTYMLRRTITDSGQADKLGKIAASADHLLGVINDILDISKIE 822
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A KL L+ FNL +L V S+ ++ R K +EL + +D F++GD R Q + N
Sbjct: 823 ANKLALDQSEFNLEELLSRVTSMVIDRVREKRLEL-IIDTDASLGFLMGDATRLGQSLIN 881
Query: 505 LVGNSVKFTERGHIFVKVHLAERT 528
+GN+VKFT+ G I ++ L E +
Sbjct: 882 YLGNAVKFTDYGSIVLRARLVEES 905
>gi|317485618|ref|ZP_07944494.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316923155|gb|EFV44365.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 845
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 177/672 (26%), Positives = 277/672 (41%), Gaps = 158/672 (23%)
Query: 353 GAAIHIVKVEDDFHKM---QELK---VRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
G ++V + D H++ Q LK A+ A+ AK FL+ +SHEIRTPMN I+GM A
Sbjct: 289 GTIRYVVSLSDRTHEVKTRQTLKDALASAQQANTAKRDFLSRMSHEIRTPMNAIIGM-AT 347
Query: 407 LLDTDLSSTQR--DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
+ + + R D K L++L+N+VLD +KIE+ KL + F+L ++D +
Sbjct: 348 IAAAHIQNHGRVADCLHKISFSSKHLMSLLNDVLDMSKIESGKLAVHHEEFDLPNLIDSI 407
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+S+ ++ ++G +V +S E ++GDP R QI+ NL+ N+ KFT G +K+ +
Sbjct: 408 VSIMYPQTESQGQHFSVALSGIEEEKLVGDPLRINQILLNLLSNARKFTPEGG-SIKLEV 466
Query: 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQ 584
+++ NGG S TG GL A + + F+ Q
Sbjct: 467 SQKRK-----------NGGVLMRFTVSDTG-----IGLSEAFQKRLFKPFE--------Q 502
Query: 585 SNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIG 644
+++SI GG TG+G+
Sbjct: 503 ADSSISQ---KYGG------------TGLGL----------------------------- 518
Query: 645 LSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG----- 699
+I+ LV LM G I S+ GS F+ LPP
Sbjct: 519 -AITHNLVTLMNGTIGVRSKEHEGSCFTVELPLA-----------------LPPNGHIQK 560
Query: 700 ----FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP 755
+ +K +VVD+ L R+GI K TA+ L D +
Sbjct: 561 KEQIARDMKVLVVDDDLDTCEYAALILRRMGIAAKW-------VLTAREALDQVVDAHE- 612
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWK-PN----------GHVFKLPKLILLATNISKDEC 804
+G++ L+DWK P V LI++ T
Sbjct: 613 -------------RGNGYDVCLIDWKMPEMDGIEATRRIREVVGPETLIIIITAYDWTSI 659
Query: 805 DKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILV 864
++ A+ + KPL +S + L V S + A + G+ LRG+ +L+
Sbjct: 660 EQRAREAGANAFLSKPLFSSALYHTLSAV-SQKKPASAAAELEPGTEGQAPSLRGRHVLL 718
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKL--QSPHCFDACFMDIQMPEMDGFEA 922
V+DN +NR + LK G + CA + + A+D +P FDA MDIQMP +DG+ A
Sbjct: 719 VEDNDLNREITEEILKMKGVSFTCAENGQIAVDIFTASAPGTFDAILMDIQMPVLDGYAA 778
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
T IR S ++ +PI+AMTA+ H L GM+ ++S
Sbjct: 779 TAAIRASHSPESQA------------------IPIIAMTANAFHEDVVSALSAGMNSHIS 820
Query: 983 KPFEEENLYREL 994
KP + E LY+ L
Sbjct: 821 KPIDPECLYQVL 832
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 847 PNGS-SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH-- 903
PNG + + R K+LVVDD+ AA L++ G + +A+ ALD++ H
Sbjct: 554 PNGHIQKKEQIARDMKVLVVDDDLDTCEYAALILRRMGIAAKWVLTAREALDQVVDAHER 613
Query: 904 --CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D C +D +MPEMDG EATRRIR++ G ++ I+ +T
Sbjct: 614 GNGYDVCLIDWKMPEMDGIEATRRIREVV---------GPETL------------IIIIT 652
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
A + + G + ++SKP LY L+ + KP S A
Sbjct: 653 AYDWTSIEQRAREAGANAFLSKPLFSSALYHTLSAVSQKKPASAA 697
>gi|336314746|ref|ZP_08569662.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
gi|335881045|gb|EGM78928.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
Length = 1547
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 197/383 (51%), Gaps = 42/383 (10%)
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIGI S Q+R+F F QA++ST+R YGGTG+GL ISK +VELM G++ S P
Sbjct: 931 SVRDTGIGISPSQQQRIFEGFTQAEASTTRQYGGTGLGLVISKRIVELMGGELQLQSEPG 990
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F F F E + + S+ + ++VD+ + Q + +LG
Sbjct: 991 KGSCFWFDLEFNVATEVEAQRLITISSDT--------RVLIVDDNATALEILQKTVEQLG 1042
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
V ++ S ++A + ++ +++ + +V D + G + AQ + K +
Sbjct: 1043 ASVMLARSGEEALACVEHCFATNQ-----TLHVVLMDYRMPGMNGLEVAQCIKAKSDAS- 1096
Query: 787 FKLPKLILLATNISKDECDKAKAGGFAD--TVIMKPLRASMIAACLQQVLSTENKRQAGR 844
LP ++++ + +DE KA+ + KP+ ++ A ++ +S + + + R
Sbjct: 1097 -NLP-VVIMVSAFGRDEIMKAQTTEVLPYAAYLTKPVTPQLVGALIEGSISGDILKPSAR 1154
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK-LQSPH 903
P S+ LRG ++L+V+DN NR+VA+ L+ GA V+ A + +D ++
Sbjct: 1155 VRPEQST---SPLRGLRLLLVEDNEFNRVVASELLEHEGAVVDMAVGGQEGIDAIIKGNT 1211
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
+D MD+QMP +DG EATR+IR A + LPI+AMTA+
Sbjct: 1212 SYDLVLMDVQMPVVDGLEATRQIR--------------------ADKRFASLPIIAMTAN 1251
Query: 964 VIHATFDECLKCGMDGYVSKPFE 986
V + ++C+K GM+G+++KPF+
Sbjct: 1252 VYTSDQEDCIKAGMNGHLAKPFD 1274
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 108/173 (62%), Gaps = 7/173 (4%)
Query: 353 GAAIHIVKVEDDFHKMQELKVR-------AEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
GAAI +V + D +EL+++ A+AA+ AKS FLA +SHEIRTPMN +LGML
Sbjct: 740 GAAIRVVGINRDITAERELELQLRESKYLADAANSAKSMFLANMSHEIRTPMNAVLGMLQ 799
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
L+ T+LS+ Q DY AQI ++L+ LIN++LD +KIEA KLELE FN A+L ++
Sbjct: 800 LIKSTELSTQQHDYTSKAQIAARSLLNLINDILDYSKIEAGKLELEQQPFNTEALLRELD 859
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+ S K IEL + +P V GD R +Q++ NL N++KFT G +
Sbjct: 860 VVLSPSLGKKNIELLFDIDSALPTAVEGDSLRLQQVLINLSSNAIKFTTEGEV 912
>gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1211
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 204/417 (48%), Gaps = 60/417 (14%)
Query: 584 QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643
Q I+ ++ ++ + L V V DTGIG+ ER+F PF QAD +T+R +GGTG+
Sbjct: 548 QQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGL 607
Query: 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKG 702
GLSI+ LV+L+ G+I S P GSTFSFT + G+ + + LPP +G
Sbjct: 608 GLSIAGRLVKLLGGEIRVESTPGAGSTFSFTCLLGRHEPH-------KALCPLPPVDLRG 660
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVE 761
L+ +VVD+ V + L V+ + S + A S L + ++ QP ++++++
Sbjct: 661 LRVLVVDDNATARQVLRQTLASFSFRVEEADSGRRALSL----LARAAEEGQPYELVILD 716
Query: 762 KDCWISGEDSGFNA-------QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
W+ E G L+D +P L++L T ++E + AG
Sbjct: 717 ---WVMPEFDGLECAAAIAADPLIDPQP---------LLILLTAHGREEIREEAAGRGLR 764
Query: 815 TVIMKPLRAS----MIAACL-QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNG 869
+ KP+ S I C Q+ +S E+ R GR S + L G ++LV +DN
Sbjct: 765 HFLTKPVLPSTLYDTIMECFGQEGISRESDR--GRRSDELESAAREKLAGSRLLVAEDNA 822
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
+N+ VAA L G + A + + A+++ + +D MDIQMPEMDG++AT IR +
Sbjct: 823 LNQQVAAELLAAVGIHCDLANNGREAVEQYRR-QTYDGVLMDIQMPEMDGYQATGAIRAL 881
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
A +Q+ PI+AMTA + ++CL GMD ++ KP E
Sbjct: 882 --PAGQQV------------------PIIAMTAHALAGEREKCLAAGMDEHIPKPVE 918
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA--LIALINEVL 438
+KS+FLA +SHEIRTPMN I+G+ L L + R Y +I G A L+ LIN++L
Sbjct: 413 SKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLYDYLEKITGSAATLLTLINDIL 472
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +KIEA KL ++ V F+L IL+ + L + ++ KG+EL V P ++GDP R
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAERT 528
Q++ NL N++KFT++G + + +A+ T
Sbjct: 533 GQVLINLTSNAIKFTQQGEVTISFEVADPT 562
>gi|333998014|ref|YP_004530626.1| sensory transduction histidine kinase [Treponema primitia ZAS-2]
gi|333740761|gb|AEF86251.1| sensory transduction histidine kinase [Treponema primitia ZAS-2]
Length = 931
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 179/644 (27%), Positives = 282/644 (43%), Gaps = 133/644 (20%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT-DLSSTQRDYAQTA-QICGKALI 431
+AE A AK+ FLA +SHEIRTPMN I+GM ++ + DL ++DY + + L+
Sbjct: 405 QAENASKAKTSFLANMSHEIRTPMNAIIGMTSIAQSSSDLE--KKDYCLSKIEEASNHLL 462
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA K +L F+ ++ V+S+ + + K L+V + +P +
Sbjct: 463 GVINDILDMSKIEANKFDLSLDDFDFEKMIRKVVSVNNFRVEEKNQILSVHIDRDIPRSL 522
Query: 492 LGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCR 550
GD R Q+ITNL+ N+VKFT E G I HL R + K + TL T+ G+
Sbjct: 523 HGDDQRLSQVITNLLSNAVKFTPESGSI----HLETR-LEKKEGDLCTLRISVTDSGIGI 577
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVED 610
S Q S E AD S KF GG
Sbjct: 578 SPEQQGRLFSSFEQADSSTS-RKF----------------------GG------------ 602
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TG+G+ +S K +VE+M G I S G+
Sbjct: 603 TGLGLAIS------------------------------KRIVEMMGGTIWLESELGKGAA 632
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSED-LPPG--FKGLKAVVVDEK-PVRAAVTQYHLNRLG 726
F FT V ++ K E L PG +K ++ + VD+ VR+ + +LG
Sbjct: 633 FIFT---------VQVELGPEKQESLLSPGINWKNIRVLAVDDDGDVRSYFAELA-EQLG 682
Query: 727 IMVKMSSSIKDASS-TAKNGLTSSE--DKFQPDIILVEKDCWISGEDSGFNAQLLDWKP- 782
+ ++S +DA + KNG D P + VE WI + KP
Sbjct: 683 FACETAASGEDAINLINKNGPYDLYFVDWKMPGMNGVELSRWIK-----------EHKPL 731
Query: 783 --NGHVFKLPKLILL--ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
V + ++++ AT + E + +AG D + KPL S +A C+ Q L +
Sbjct: 732 TDTSSVLPVKSVVIMISATEWNVIETEAKQAG--VDKFLPKPLFPSSLADCINQCLGSNT 789
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ + + G+ IL+ +D +N+ + L+ ++CA + AL
Sbjct: 790 TASSSKKKDD----EPDDFSGRHILLAEDVEINQEILIALLEPTSIMIDCAGNGAEALRI 845
Query: 899 LQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
+ P +D FMD+QMPEMDG+EATR IR G K E +PI
Sbjct: 846 FKDQPDKYDIIFMDVQMPEMDGYEATRGIRS----------------SGIPKAKE--IPI 887
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+AMTA+V ++CL GM+ ++ KP + +++ +L ++ +
Sbjct: 888 IAMTANVFREDIEKCLAAGMNDHLGKPLDFDDVLSKLRQYLPKR 931
>gi|114563977|ref|YP_751491.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
400]
gi|114335270|gb|ABI72652.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
400]
Length = 1632
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 175/657 (26%), Positives = 288/657 (43%), Gaps = 131/657 (19%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELK-------VRAEAADVAKSQFLATVSHEIRTP 396
G + Y G + +V + D + +EL+ A+AA AKS FLA +SHEIRTP
Sbjct: 858 GAQISYDKTGKPVRVVGINRDITEQRELEQTLRLAKQAADAASAAKSAFLANMSHEIRTP 917
Query: 397 MNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFN 456
MN +LGML L+ +D+S Q DY A+ K+L+ L+N++LD +KI+A KLEL+ F
Sbjct: 918 MNAVLGMLQLIQHSDMSRQQADYVTKAENAAKSLLGLLNDILDFSKIDAGKLELDLHPFQ 977
Query: 457 LRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
L ++ ++ + + ++ +E+ + +P + GD R RQ++ NL GN++KFT G
Sbjct: 978 LETLMRELAVMLAANVHSQHLEVIFDLDPAIPYLIEGDELRLRQVLLNLAGNAIKFTSEG 1037
Query: 517 HIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKH 576
H+ V V E T A L T+ G+ S G A+ S +F
Sbjct: 1038 HVIVGVQCNECT-----ANQVNLTISITDSGIGISPEQSSKIFQGFVQAESSTS-RRF-- 1089
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
GG TG+G+ ++ + + M + S S
Sbjct: 1090 --------------------GG------------TGLGLAIT---KSLVELMGGELSLSS 1114
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
H G GS F F F +I + K+ DL
Sbjct: 1115 HVGE---------------------------GSRFWFELTF---------NIVEVKNNDL 1138
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756
G ++VD+ + + L G V + + K A + + L +S D
Sbjct: 1139 DIDLLGKNILIVDDSKMSRKILSKTLMAHGAYVNEAHNSKQAINLIEQSLNASS---HYD 1195
Query: 757 IILVEKDCW----ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISK--DECDKAKAG 810
+I+++ W ++G ++ + Q + P G K P +I+L ++ ++ + +
Sbjct: 1196 VIIMD---WRMPDMNGLETANHIQAM--FPAG---KAPAIIMLTAYGAEVMEQTKQYRQQ 1247
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
F +++ KP+ A+++ + + ++ + R + + +L+G ++LVV+DN +
Sbjct: 1248 PFV-SMLTKPVTANLMLEAVYRAINGLVQPVQSRKITH------LVLKGVRVLVVEDNQL 1300
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
NR V L+ GA V A +D + +S + FD MD+QMP MDG EAT IR
Sbjct: 1301 NRQVIDELLRLQGAVVTLAKDGIEGVDWVTKSNNQFDIVIMDMQMPVMDGLEATHLIR-- 1358
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
DG LPILAMTA+ A CL+ GMD ++ KP +
Sbjct: 1359 --------------ADGRFN----DLPILAMTANASLADKTLCLEAGMDDHIGKPID 1397
>gi|359413616|ref|ZP_09206081.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
gi|357172500|gb|EHJ00675.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
Length = 940
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K E + +K +E +AEAA++AKSQF+A +SHEIRTPMNGI G L LL TDLS+ QR++
Sbjct: 303 KAETELYKAKE---QAEAANIAKSQFIANMSHEIRTPMNGIFGFLELLQSTDLSTEQREF 359
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ A+ L+ ++N++LD +KIEA+KL +E + FNLR ++D +SL + K+ KGIEL
Sbjct: 360 IREAKSASDILLDIVNDILDFSKIEAKKLTMENIKFNLRTTIEDAVSLIAPKAATKGIEL 419
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+ VPE V+GDP R RQI+ NL+ N+VKFT G I V V E
Sbjct: 420 YAMIKSGVPEEVIGDPSRLRQILNNLISNAVKFTTEGEISVSVSYLE 466
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 189/385 (49%), Gaps = 38/385 (9%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V+DTGIGI ++F F QAD+ST+R YGGTG+GL+I LV++M G+I S
Sbjct: 478 VKDTGIGIRKEDINKIFKSFSQADASTTRKYGGTGLGLAICNELVKMMGGEIWAQSVFGE 537
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF F K + +K + FK + ++VD+ + HL + G+
Sbjct: 538 GSTFKFNVRLKIAK-------RANKQKFDFEKFKNINVLIVDDNENNRNIFSSHLEKTGL 590
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
+ + A TA ++E+K +I D + G + A L P
Sbjct: 591 NIFQAEGATSA-ITAIISKANTENKINIALI----DYQMPGMNGYELATTLRTMPFA--- 642
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
K +LILL + K + K GF+ T++ KP++ + +C+ + L EN+ +
Sbjct: 643 KDIQLILLTSVTQKVDIKSIKEYGFS-TLLAKPVKKDDLLSCIAKTLGLENEEEQAIIKH 701
Query: 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDA 907
N +F+ L KIL+V+DN VNR + LK T + A + ALD + S +D
Sbjct: 702 NIKNFNNAL--NPKILLVEDNEVNRKIVIRMLKSRNMTCDVAINGSDALDAV-SKKDYDV 758
Query: 908 CFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967
FMD QMP MDG+E+T RIR +E D+ H I+AMTA+ +
Sbjct: 759 VFMDCQMPVMDGYESTARIRHLEG-------------------DKKHTTIIAMTANAMAG 799
Query: 968 TFDECLKCGMDGYVSKPFEEENLYR 992
++C+K GMD Y+SKP + + +++
Sbjct: 800 DCEKCIKAGMDAYISKPIDFDKMFK 824
>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
Length = 1083
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 124/169 (73%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KV++ +++ K AE A++AKSQFLA +SHEIRTP+NGI+G L++L TDL STQ+DY
Sbjct: 425 KVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDLDSTQQDY 484
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+T Q + L+ +IN++LD +KIEA ++E+E V F++R++++ + L+ K+R KG+EL
Sbjct: 485 IETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGLEL 544
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+ ++ +P ++GDP + RQII+NLV N+VKFT G +F++V + + T
Sbjct: 545 NMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKET 593
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 200/411 (48%), Gaps = 59/411 (14%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V L + DTGIG+ ++F PF QADSS++R YGGTG+GL+I K +VE+M G IS
Sbjct: 596 EVQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKIVEMMGGTIS 655
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG---FKGLKAVVVDEKPVRAAV 717
S G+TF F + K ++ V + +PP FKG + +V+D+ + +
Sbjct: 656 VKSVKNRGTTFCFDLLLDKSEQSVIQ---------MPPDYSIFKGKRILVIDDYEMNRYI 706
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
+ +L +G M+ + S++ A S N ++ + IL++ + E +GF +L
Sbjct: 707 AKVYLEEVGCMIDEAESLESALSMLIN------NRKAYNTILID---YQMKEITGF--EL 755
Query: 778 LD-WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
++ K G + +P LILL + + E AK F+ I KP + + C+ V+
Sbjct: 756 VEIMKERGLINDIP-LILLTSVTANSEARIAKENKFS-GYISKPYKRGDLLDCVAMVI-- 811
Query: 837 ENKRQAGRGVPNGSSF--HQGLLRGK-----KILVVDDNGVNRMVAAGALKKFGATVECA 889
+ G + N F Q + K KIL+V+DN +N +LK G T + A
Sbjct: 812 ---KGDGSKIYNNDVFITKQNVEEAKYNKKIKILLVEDNDINIKFFVNSLKLNGLTCDIA 868
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
AL ++ +D FMD QMP MDG+EATR+I + S N
Sbjct: 869 IDGAKALKACENKE-YDIIFMDCQMPVMDGYEATRKILLLRSYKN--------------- 912
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+P++AMTA + +CL+ GM Y+SKPF + + L K K+
Sbjct: 913 -----VPVIAMTAYSMKDDEIKCLEAGMIDYLSKPFTVDQVMEMLEKHVKN 958
>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
Length = 1259
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/399 (32%), Positives = 185/399 (46%), Gaps = 45/399 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
VEDTGIG+P S +R+F F Q D+ST+R YGGTG+GL+I K LVELM G+I S
Sbjct: 754 VEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLGLAICKQLVELMGGEIGVESEVGK 813
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF FT + I++S +L P +GL+ + VD+ + V + L G+
Sbjct: 814 GSTFWFT--------LPLQAIERSTC-NLIPNIQGLRVLAVDDNHMNLQVIKEQLQSWGV 864
Query: 728 MVKMSSSIKDASSTAKNG---LTSSEDKFQPDII--LVEKDCWISGEDSGFNAQLLDWKP 782
V STA NG L ED + ++ L D + D A L++
Sbjct: 865 EV----------STAGNGRRALALLEDAAKRNVPYQLAILDHLMPELDGLRLAHLINDHQ 914
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
H +L L I E K + + KP+R + + L + + +Q
Sbjct: 915 MLHETRLLMLTSYEHTIPHAELKKLEM-----VCLPKPVRQTRLLDALVALTGERSPKQK 969
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
V N + ILVVDDN +NR+VA L+ G V A + + A++K+QS
Sbjct: 970 VEKVENQQPVRERAPLEGAILVVDDNEINRIVAKEILQSEGFQVSLAENGRQAVEKIQSG 1029
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
FD MD +MPEMDGF ATR IR + + ++ N LPI+A+TA
Sbjct: 1030 Q-FDLVLMDCEMPEMDGFAATRMIRNLAENGHPELAN---------------LPIVALTA 1073
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ + CL GM+GYV KP L + K
Sbjct: 1074 QAVLGDKERCLAAGMNGYVMKPVNRSELIDTIVDCLSRK 1112
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S FLA++SHEIRTP+NG++G L LL T L Q + + A+ +L+ LIN++LD +K
Sbjct: 595 STFLASMSHEIRTPLNGVIGFLDLLHTTKLDDQQGRFVELAKSSASSLLHLINDILDLSK 654
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
IEA +ELE F L +++ V +F+ + R G+EL V+ VP+ +GD R RQ++
Sbjct: 655 IEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERIRQVL 714
Query: 503 TNLVGNSVKFTERGHIFVKVHLAERTMVKT 532
NL N+VKFTE G ++++V ER++ +
Sbjct: 715 VNLFANAVKFTETGGVYLRVE-RERSVASS 743
>gi|428215875|ref|YP_007089019.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004256|gb|AFY85099.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1694
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 204/419 (48%), Gaps = 42/419 (10%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
II A E + + V+DTGIGI Q ++F F Q D+ST R YGGTG+GL+I
Sbjct: 1157 IIQASAIAETEETACIRMSVKDTGIGISPEGQNKLFQSFSQVDASTKRQYGGTGLGLAIC 1216
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K LVE+M GQI S+ GSTF FTA F K+ F I+ S LP L+ +VV
Sbjct: 1217 KQLVEMMGGQIGVDSKLGEGSTFWFTAEFK--KQLHFTPIEVSPPRKLP----SLRVLVV 1270
Query: 709 DEKP-VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE--DKFQPDIILVEKDCW 765
D+ P +R +V + G+ +++ +A + + +T ++ D D+ L K+
Sbjct: 1271 DDNPRIRQSVREL-TEAWGMHTDDAANATEAWNALQQTVTLNKPYDVLLLDLQLPSKEGL 1329
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
E+ +N + D H+F ++IL+ +D + + G A + KP+RAS
Sbjct: 1330 QLLENLHYNREQFD----SHLFPETQVILMTNQSQRDIAESLLSRGVA-SYFFKPVRASR 1384
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK--KILVVDDNGVNRMVAAGALKKFG 883
+ L V++ + + G + H ++ ILV +DN +N+ V L+ G
Sbjct: 1385 LFDTLINVVNGPSSTASSMG-----TLHAPIIPAYAINILVAEDNLINQTVILSQLEMLG 1439
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
+C + AL+ + + +D MD QMP MDG+ AT+ +R+ E
Sbjct: 1440 YQPDCVTNGIEALEAI-TQKTYDLVLMDCQMPVMDGYAATKELRRREE------------ 1486
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
A+R H ++A+TA+ + +CL GMD Y+SKP E E+L + ++ KP
Sbjct: 1487 ----AQR---HTIVIALTANAMRGDRQKCLDAGMDDYLSKPIEREDLAAAIRRWIHKKP 1538
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 120/206 (58%), Gaps = 14/206 (6%)
Query: 371 LKVRAEAADVA--KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
+K R A + A KSQFLA +SHEIRTPMNG+LGM LLL+T LS+ Q DYA+T + +
Sbjct: 1007 VKAREAALESARFKSQFLANMSHEIRTPMNGVLGMAGLLLETPLSTQQYDYAKTIRASAQ 1066
Query: 429 ALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVP 488
L+++IN++LD +K+EA ++ LE FNL ++ VL L ++ KG++L+ +
Sbjct: 1067 HLLSIINDILDFSKLEAGEMHLEQFDFNLYESVEQVLDLLGAQAEAKGLDLSFLFDPNLA 1126
Query: 489 EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK----VHLAERTMVKTDAKDETLLNGGT 544
+ GDP R QI+ NLVGN++KFTE G I ++ E ++ KD +
Sbjct: 1127 RNLQGDPVRLGQILLNLVGNAIKFTEVGEIIIQASAIAETEETACIRMSVKDTGI----- 1181
Query: 545 EEGVCRSGTGQ-FNTLSGLEAADGRN 569
G+ G + F + S ++A+ R
Sbjct: 1182 --GISPEGQNKLFQSFSQVDASTKRQ 1205
>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
Length = 954
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 197/396 (49%), Gaps = 47/396 (11%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V + + DTG+GI + Q+R+F PF Q DSS++R++GG+G+GL+I L+ELM G++
Sbjct: 460 EVRIRFTISDTGVGITPADQKRIFEPFTQVDSSSTRNFGGSGLGLTICHELLELMGGRLE 519
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S P VGS FSF +F + + + +S LPP F G++ +VVD+ + +
Sbjct: 520 LNSEPGVGSRFSFALLFPRTRTAE----SRLRSAILPPEFAGMQVLVVDDNETNRKILRE 575
Query: 721 HLNRLGIMVKMSSSIKDA----SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
L + +S ++A S K G D F D++L+ D + G D G++
Sbjct: 576 LLRSWELDAFTTSDAEEAIRLFSEKQKVG-----DPF--DLVLI--DALMPGID-GYDL- 624
Query: 777 LLDWKPNGHVF-KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
K G V K P ++L+A + + + + + KP+ AS + L + +S
Sbjct: 625 ---CKRLGEVAGKTPPIVLMAAPSDRHHFREREEDLPIRSTLAKPITASSLHDSLVEAMS 681
Query: 836 -TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ Q R V SSFH ++++V+D NR + LKK G V A + +
Sbjct: 682 IAAPESQRSRSVEVLSSFH-----ALRVMLVEDTAANRKLVTSLLKKRGHIVVEAHNGRE 736
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
AL+K + FD MD+QMP MDG + T IRQ+E + +
Sbjct: 737 ALEKFRDDE-FDVILMDVQMPIMDGLQTTAAIRQIEREEGYE-----------------P 778
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
PI+AMTA + ++CL GMD Y+SKP + ++L
Sbjct: 779 TPIIAMTAHAMQGDREKCLGAGMDAYISKPIDIDDL 814
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 97/145 (66%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S+FLA VSHEIRTPMN I+GM L L DL R+Y +TA L++L+N++LD +K
Sbjct: 312 SEFLANVSHEIRTPMNAIIGMTKLTLAEDLPEAVREYVETANSSAHTLLSLLNDILDFSK 371
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
IEA K ++ FNLR +D + SE++ +KG+E+A+ ++PE ++GD R RQII
Sbjct: 372 IEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEELIGDAIRLRQII 431
Query: 503 TNLVGNSVKFTERGHIFVKVHLAER 527
TNLV N+VKFTERG + + V L R
Sbjct: 432 TNLVSNAVKFTERGEVLLSVKLLRR 456
>gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 1364
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 197/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K PP + V+ E R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSS---------------PPQAQRELPVLPPEAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +NR VA L+ GA V A
Sbjct: 1007 VEQLL---EERPGAR--PATPTFVARRLEGAHLLLVDDSDINREVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMSHVK---SLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGAPVMTSPISLSGYRV 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
+ G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PNESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|351728725|ref|ZP_08946416.1| hypothetical protein AradN_03058 [Acidovorax radicis N35]
Length = 1020
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 202/415 (48%), Gaps = 48/415 (11%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+ + + ++ V L V+DTGIG+ Q R+F F QAD+ST+R YGGTG+GL+IS
Sbjct: 406 IVRVREAARDAQGVLLRFEVQDTGIGLTDEQQSRLFRSFEQADTSTTRKYGGTGLGLAIS 465
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVV 707
K L LM G + S P GSTF FTA G ++ LP P +G + +V
Sbjct: 466 KKLASLMGGDVGVQSAPGRGSTFWFTARLGLGAS--------TQRPLLPEPDLRGRRVLV 517
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWI 766
VD+ + L+ + V ++SS A A+ +++ +P +I + D +
Sbjct: 518 VDDSEQARQILAELLSSMSFSVTLASSGAQAVDLAR----AADQAGRPCEIAFL--DWKM 571
Query: 767 SGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
G D A+ L P+ P+ +++ + D ++ G ++ KP+ S +
Sbjct: 572 PGMDGFETARQLAQLPHP-----PRPVIVTAHGRDDVLNELTRSGIG-LMLTKPVNPSQL 625
Query: 827 AACLQQVLSTENKRQAGRGV---PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG 883
+ L + GR + P G+ +RG ++L+VDDN +N+ V L G
Sbjct: 626 FDAAMRALGGAQRVDDGRRLPVPPRGAELAS--IRGARVLLVDDNDLNQQVGRELLTSAG 683
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
V+ A + +AALD L + +D MD+QMP MDG ATR +RQ + A
Sbjct: 684 LVVDVADNGQAALDML-ARGTYDIVLMDMQMPVMDGLTATRHLRQNPTWA---------- 732
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP+LAMTA+ + + ++CL GM+G+++KP + E L+ L ++
Sbjct: 733 ----------RLPVLAMTANAMSSDREQCLDAGMNGHIAKPIDPEALFAALLQWI 777
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 102/156 (65%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ +AE A KS FLA +SHEIRTPMN ++GM L L T+L+ QRDY Q Q G+ L+
Sbjct: 259 QAKAEDASRMKSDFLANMSHEIRTPMNAVIGMSHLALATELTVRQRDYIQKIQRSGQHLL 318
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LIN++LD +KIEA KLE+E V F+L +LD+V +L EK +KG+EL V +P +
Sbjct: 319 GLINDILDFSKIEAGKLEVEVVDFDLHGVLDNVANLLGEKCASKGLELMFDVDSHLPADL 378
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GDP R QI+ N N+VKFT+ G I V+V A R
Sbjct: 379 RGDPLRLGQILVNYANNAVKFTDEGEIIVRVREAAR 414
>gi|406836202|ref|ZP_11095796.1| sensor protein [Schlesneria paludicola DSM 18645]
Length = 1992
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 198/410 (48%), Gaps = 57/410 (13%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+DVTL + DTGIGI ++R+F F QAD+S +R +GGTG+GLSIS LVELM G+I
Sbjct: 1624 DDVTLHFAIRDTGIGISEEQKDRIFASFSQADNSITRRFGGTGLGLSISSELVELMGGKI 1683
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GSTF FTA + ++ + SE F + ++VD+ P +V
Sbjct: 1684 WVESELGHGSTFHFTA-------RLTLPVEAAASEKSRIVFPPVPVLIVDDHPTSRSVLT 1736
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L ++G+ + + + A + + S Q LV D + G+D A+ +
Sbjct: 1737 DTLEQMGLQPQAVHNAETAYLMMRYAVMS-----QTPTQLVLIDAMMPGQDGWALAEQIR 1791
Query: 780 WKPNGHVFKLPKLILL-ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
P+ + P L+L+ A+++ ++ ++A KP + S +A +Q+ LS
Sbjct: 1792 RDPD--LSGCPILMLVPASHVYTEQQNEALRSN--TWYFTKPAKVSELADAIQEALSV-- 1845
Query: 839 KRQAGRGVPNGSSFHQGLLRGK--------KILVVDDNGVNRMVAAGALKKFGATVECAA 890
SS + G LR + +IL+VDD VNR VA G L+ FG V+ A
Sbjct: 1846 -----------SSGNDGSLREEAVTTQQPMRILLVDDAPVNREVATGLLEMFGHHVQTAT 1894
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ + A++ L+S FD MD++MPEMDG A IR+ E +
Sbjct: 1895 NGREAVELLES-QAFDVVLMDLEMPEMDGMSAAIEIRKREQSKS---------------- 1937
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ PI AMTA + D CL+ GMDGY++KP + + L L S
Sbjct: 1938 --VSTPIFAMTAHATNDIRDRCLEAGMDGYLTKPIQPDELMATLESLESS 1985
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 107/161 (66%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
K++E K AE A AKSQFLAT+SHEIRTPMNGI+GM L L T ++ Q Y + +
Sbjct: 1461 KLREAKEAAENASQAKSQFLATMSHEIRTPMNGIIGMTDLTLMTRPTAQQTSYLRVVKQS 1520
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+L+ L+N++LD +KIEA +LELE++ F+LR + D + + S KS G+EL ++
Sbjct: 1521 ADSLMRLLNDILDFSKIEAGRLELESIPFDLRETVSDAVRILSVKSAQTGLELNYQIAPD 1580
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
VP V GD GR RQI+ NLVGN++KFT G +FV V ER
Sbjct: 1581 VPLLVGGDAGRLRQILVNLVGNAIKFTAEGEVFVDVWTEER 1621
>gi|428215971|ref|YP_007089115.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004352|gb|AFY85195.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1259
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 196/409 (47%), Gaps = 50/409 (12%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
VTL V DTGIGI Q ++F F Q DSS++R YGGTG+GL+ISK LVELM G+I
Sbjct: 727 VTLRFAVTDTGIGILPQNQTKLFQSFSQVDSSSTRQYGGTGLGLAISKQLVELMEGKIGV 786
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE-DLPPG----FKGLKAVVVDEKPVRAA 716
S GSTF FT ++Q+ +E + PG + LK +V DE +
Sbjct: 787 ESELNQGSTFWFTVTL---------PVQQNPTEKENSPGTTLEMESLKLLVADESAMHRQ 837
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
Q+ +R GI V + ++A S + P L+ + GE S Q
Sbjct: 838 SVQHFADRWGITVDQVTDPQNALSALRAAAAEGT----PYHALLASVNLLEGEGSTL-LQ 892
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL-- 834
L+ +PN + I LA ++ +A A + I+KPLR S A LQQVL
Sbjct: 893 ALNQEPN---LATTRTIALA-QFNQRAIAEALAPHWVSAYIIKPLRGSQFVASLQQVLEP 948
Query: 835 --STENKRQAGRGVP-NGSSFHQG--LLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+ ++ + +G P +GS+F + KIL+ +D+ +N+ V L G +C
Sbjct: 949 KVALSDRPRGSQGEPFSGSAFSLAPPPVCPLKILIAEDHEINQQVIVFQLNTLGYHADCV 1008
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ ALD+L +D FMD QMP+ DG+E TR +RQ E
Sbjct: 1009 NNGLEALDRLACED-YDLVFMDCQMPQKDGYEVTRELRQSEG------------------ 1049
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ H ++A+TA +++ +CL+ GMD Y+SKP E L L ++
Sbjct: 1050 -NRRHTIVIALTAHALNSDRQKCLEAGMDDYLSKPVLLEQLQAALDRWI 1097
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 105/155 (67%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+ ++K A AA+ AKS+FLA++SHEIRTPMNG+LGM LLL T+L+ Q+ YAQT
Sbjct: 551 LAQMKQAAVAANRAKSEFLASMSHEIRTPMNGVLGMTGLLLATELNPQQKHYAQTIFSSA 610
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+ L+ +IN++LD +K+EAR++ L + F L ++ V+ L ++ KG++L + + V
Sbjct: 611 EHLLTVINDILDFSKLEAREMHLNPINFELDECIESVVDLMVAPAQEKGLDLGICIDRNV 670
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P + GDP R RQI+ NLV N++KFTE G + + V
Sbjct: 671 PRHLFGDPARLRQILLNLVNNAIKFTEVGEVSIAV 705
>gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str.
'morsitans']
gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str.
'morsitans']
Length = 925
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 118/169 (69%), Gaps = 4/169 (2%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L T LS TQRDY QT + G L+
Sbjct: 284 KKRAQEAVRIKSKFLANMSHELRTPLNGVIGFTRQTLKTPLSPTQRDYLQTIERSGNHLL 343
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN+VLD +K+EA KL LE + F LRAILD+V+ L + + KG+EL + V +VPE+V
Sbjct: 344 SIINDVLDFSKLEAGKLMLETIPFALRAILDEVVILLAHTAHEKGLELILQVQREVPEYV 403
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV----HLAERTMVKTDAKD 536
+GDP R +Q++TNL+GN++KFTE+GHI ++V H ER + +D
Sbjct: 404 IGDPLRLQQVMTNLIGNAIKFTEQGHIIIRVSCQGHERERVEINVQIRD 452
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 178/432 (41%), Gaps = 62/432 (14%)
Query: 579 DAEGFQSNASIINMMASNGGS-EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F II ++ G E V + V + DTGIGIP Q ++F F QAD+S +R
Sbjct: 420 NAIKFTEQGHIIIRVSCQGHERERVEINVQIRDTGIGIPERQQSQLFQAFRQADASIARR 479
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG-KCKEYVFEDIKQSKSEDL 696
+GGTG+GL I++ LV M G+I+F SR GSTF F C +V
Sbjct: 480 HGGTGLGLVITQKLVHEMGGEITFRSRTGRGSTFWFHIPLQINCHAWVD----------- 528
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756
P + L + +A Q L L S D + Q D
Sbjct: 529 PHRYDALMHKRLALIETNSASAQATLELLADTPLEVSHYPDLDALGDA---------QVD 579
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS-KDECDKAKAGGFADT 815
I+L+ K + +LL + +GH + I+LA S E + K G AD
Sbjct: 580 ILLLGKPVTATLSLPEMRYELL--QASGHA----RCIILALPGSWMVEAELLKQMG-ADA 632
Query: 816 VIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN-RMV 874
+ KP+ + LQ S + G P ++ VDDN N +++
Sbjct: 633 CLTKPVSGQRLLPLLQSPPSPRPSSEPEAGTP---------CLPLTVMAVDDNPANLKLI 683
Query: 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
A ++ T+ C ++A+A + P D MDIQMPE+DG A IRQ+ A
Sbjct: 684 GALLQEQVEQTLLCNSAAEAVAYARKKP--LDIILMDIQMPEIDGLRAAELIRQLPLHA- 740
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
H PI+A+TA I L GM ++KP +E L R L
Sbjct: 741 -------------------HTPIVAVTAHTISDERQRLLDAGMVDCLAKPIDEAMLRRLL 781
Query: 995 AKFFKSKPLSGA 1006
+++ P S A
Sbjct: 782 SRYGIHDPASPA 793
>gi|430748007|ref|YP_007207136.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430019727|gb|AGA31441.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 1098
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 200/415 (48%), Gaps = 44/415 (10%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++++ + +++V L V DTG+GIP Q+ +F F+QADSST+R YGGTG+GL+IS
Sbjct: 577 VVHVEKESQTADEVCLHFRVTDTGVGIPRERQDLIFDAFIQADSSTTRQYGGTGLGLTIS 636
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFG--KCKEYVFEDIKQSKSEDLPPGFKGLKAV 706
L+ LMRG++ S GSTF FT G K + + ++LP +
Sbjct: 637 SRLIALMRGRVWVESEAGQGSTFHFTMRLGVRKAPGITRDSAGSTLVDNLP-------VL 689
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
VVD+ + + L + + K + A + K ++ D + LV D +
Sbjct: 690 VVDDNATNRLILEEILTKWRMRPKAVADGPSALAEMKRA-AAAGDPYA----LVLADAMM 744
Query: 767 SGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
G D GF LL+ L++L++ + D+ + G + ++KP++ S +
Sbjct: 745 PGMD-GFT--LLEQIKAHPELARSTLMMLSSADQSGDVDRCRRMGV-NAYLVKPIKRSEL 800
Query: 827 AACLQQVLSTENKRQAGRG--VPNGSSFHQGLL----RGKKILVVDDNGVNRMVAAGALK 880
+ L T GRG S G L RG +IL+V+DN VN+ +A L+
Sbjct: 801 LDAIVTSLGTSGVAD-GRGDLANRVSRLEPGDLPAPSRGLRILLVEDNPVNQTLATILLE 859
Query: 881 KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
K G V A + K L + FD MD+QMPEMDG E T IR E
Sbjct: 860 KRGHKVIVACNGKEGLAAWEKQE-FDLILMDVQMPEMDGLEVTACIRARER--------- 909
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
GT + H+PI+AMTA I + CL+ GMDGYVSKP E +L+R +A
Sbjct: 910 -----GTGR----HIPIVAMTAHAIKGDREHCLQAGMDGYVSKPIEVGDLFRAIA 955
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 106/154 (68%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS FLAT+SHEIRTPMN I+GM L LDTDL+ QR Y + + ++L+ LI
Sbjct: 433 AEQATQAKSTFLATMSHEIRTPMNAIIGMTELTLDTDLTPEQRQYLELVKESSESLLTLI 492
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL+LE++ F+L L + + + ++ K +ELA ++ VPE ++GD
Sbjct: 493 NDILDLSKIEAGKLDLESIDFSLHESLGNTMKALALRAHKKRLELAYHIAPDVPETLVGD 552
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
PGR RQI+ NLVGN++KFTE G + V V +T
Sbjct: 553 PGRLRQIVVNLVGNAIKFTEHGEVVVHVEKESQT 586
>gi|445499004|ref|ZP_21465859.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444788999|gb|ELX10547.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 1210
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 198/407 (48%), Gaps = 50/407 (12%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIG+ ++F F QAD+ST+R YGGTG+GL+ISK L +LM G++
Sbjct: 618 VLLHFAVRDTGIGLSEEQMRQLFQSFQQADASTTRKYGGTGLGLAISKKLAQLMGGEVGV 677
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL--PPGFKGLKAVVVDEKPVRAAVTQ 719
S+P +GSTF FTA I S L P +G + +VVD+ +V
Sbjct: 678 ESQPGLGSTFWFTARL---------QIGHSARPSLLPSPDLRGKRLLVVDDNDSARSVLA 728
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW----ISGEDSGFNA 775
L + V+++SS +A ++ E ++L++ W +SG D+
Sbjct: 729 ELLRGMRFDVRVASSGAEALDMVRDAAVGGEPLH---VVLLD---WQMPVMSGIDTAAAI 782
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
+ L + P +++ T ++E + D V++KP+ AS++ L ++L
Sbjct: 783 RAL-------ALQEPPRMMMVTAYGREEVQQQAHNAGIDDVLIKPVNASVLLNTLIRLLG 835
Query: 836 TE-NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
E + R + LRG ++L+ +DN +N+ VAA L G VE A +
Sbjct: 836 GEVDDSTLARPAQVSTLAALATLRGARVLLAEDNELNQQVAAELLADAGLVVEIANNGAE 895
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A+ Q +D MD+QMP MDG EATR +R + ++DG
Sbjct: 896 AVAMAQREQ-YDIVLMDMQMPVMDGVEATRALRAL------------PALDG-------- 934
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LP++AMTA+ + A + C++ GM +V KP E ++L+R L ++ +
Sbjct: 935 LPVVAMTANAMQADRELCIQAGMVDFVIKPIEPDDLWRALLRWVPPR 981
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 97/153 (63%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AE A +KS FLA +SHEIRTPMN I+GM L L T L+ Q DY Q Q G+ L+
Sbjct: 458 KQTAEDATRSKSLFLANMSHEIRTPMNAIIGMSHLALKTGLTPRQHDYVQKIQRAGQHLL 517
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL++E F L +L+++ +L +K KG+EL V+ VP +
Sbjct: 518 GIINDILDFSKIEADKLQVENQPFELDQLLENLATLIGDKVNAKGLELVFDVAPDVPTAL 577
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+GD R QI+ N N+VKFTE+G + V V +
Sbjct: 578 VGDALRLGQILINYANNAVKFTEQGEVAVTVRV 610
>gi|301057759|ref|ZP_07198828.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
gi|300448070|gb|EFK11766.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
Length = 438
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/406 (33%), Positives = 205/406 (50%), Gaps = 27/406 (6%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+ L V DTGIGIP E +F PF QAD ST+R YGGTG+GLSI K + LM G +
Sbjct: 46 IKLHARVRDTGIGIPSDKLELIFDPFRQADGSTTRKYGGTGLGLSICKRISSLMGGDVWA 105
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GS F FTA FGK + K+S+ P G KA++VD+ + +
Sbjct: 106 ESDEGKGSIFHFTAWFGKSES------KESRPY-TPVSLTGKKALLVDDNETNLKILARY 158
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW-ISGEDSGFNAQLLDW 780
L +G+ + + D + + +D F DI + + +SG + +L +
Sbjct: 159 LEPVGMRLVLLDKGMDVLPLLEKSI-DEQDPF--DICIADIQMPDMSGYEVARQIRLFE- 214
Query: 781 KPNGHV-FKLPKLILLATNISKDECDKAKAG--GFADTVIMKPLRASMIAACLQQVLST- 836
P+ + + L L+A + S E D + G GF D + KP+R + L+++L
Sbjct: 215 SPHARLRMSIRSLPLMALS-SMMERDAKRCGEVGF-DGFLAKPVRRERLYRMLERILGAT 272
Query: 837 ---ENKRQAGRG-VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
E + G V S + + R +IL+V+DN VN+ +A LKK G V+ A +
Sbjct: 273 LIGEQRIPVEPGEVMTHYSVREEMKRSVRILLVEDNPVNQKLAKMMLKKAGYQVQVANNG 332
Query: 893 KAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
K A++ L S + FD FMD+QMPEMDG ATR IR++E + + G T +R
Sbjct: 333 KEAVEMLMASQNGFDLIFMDVQMPEMDGLTATREIRRLEKEHVLRPPRGRDFHPLTRRR- 391
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+PI+AMTA + + C+ GMD YV+KP + + ++ + K+
Sbjct: 392 ---IPIIAMTAHAMKGDQETCMDAGMDDYVAKPIKRDVVFSVVEKW 434
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+P V GDP R RQ++TNL+ N+ KFTE G I + V + E
Sbjct: 1 MPHNVKGDPTRVRQVLTNLMANAPKFTEAGEIELSVDVEE 40
>gi|385799765|ref|YP_005836169.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
2228]
gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
2228]
Length = 1043
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 199/405 (49%), Gaps = 50/405 (12%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ + L V+DTGIG+ Q+++F F QADSST+R YGGTG+GL+IS+ LVE M G+I
Sbjct: 464 QKIKLKFIVKDTGIGMTKEEQQKLFSQFTQADSSTTRKYGGTGLGLTISQRLVEKMGGEI 523
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+P GSTF+FTA FG K+ P + LK +D K V V
Sbjct: 524 KVESKPAEGSTFTFTAQFGLGKQ--------------PQLSQKLKKYNLDHKKV-LIVDD 568
Query: 720 YHLNR---LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+NR +G++ + ++ AS L + K + D L+ D + D A
Sbjct: 569 IKMNRDFLIGVIDQFGLEVEAASGAL---LAIEKIKKESDYDLIFMDWKMPDLDGIKAAT 625
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
++ + N + +PK+IL+ + E + K D ++ KP+ S++ L L
Sbjct: 626 IIKEELNLEL--VPKIILITAFGKELENSQQKN---IDKILFKPITQSILFNALLNSLGG 680
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
N + NG + L ILVV+DN +N+ VA L+K A VE A + K A+
Sbjct: 681 VNIEKEKN--KNGEKILKD-LGPVNILVVEDNKINQQVAVELLRKVKAQVEIADNGKKAI 737
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
FD MD+QMPEMDG++AT++IRQ + +N LP
Sbjct: 738 -AKIKKQKFDLVLMDVQMPEMDGYQATKKIRQ------DLNLN--------------KLP 776
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA+ I ++ L GMD Y++KP + + + L K+ K
Sbjct: 777 IIAMTANAIKGHKEKALAMGMDDYITKPLDLDQFFSTLKKWLPVK 821
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE A+ AKS+FLA +SHEIRTP+N I G++ L+LDT LS Q+DY + Q +L
Sbjct: 307 KQKAELANKAKSEFLANMSHEIRTPINAIKGLIYLILDTPLSMQQKDYLKKIQSSTVSLS 366
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LIN++LD +KIEA+KL+LEA F L +L D+ + + K+ +KG+E + +D VP+ +
Sbjct: 367 RLINDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEF-FYDTDHVPQKL 425
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
+GD R QI+ NLV N++KFTE G + + V + ++T K K
Sbjct: 426 VGDSLRLGQILLNLVSNAIKFTETGEVRLIVRIIKKTEQKIKLK 469
>gi|300856171|ref|YP_003781155.1| sensor histidine kinase/response regulator hybrid [Clostridium
ljungdahlii DSM 13528]
gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium ljungdahlii DSM 13528]
Length = 949
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 115/161 (71%), Gaps = 3/161 (1%)
Query: 362 EDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ 421
E + +K +E +AEAA++AKSQFLA +SHEIRTPMNGI G L LL T+LS Q+D+ +
Sbjct: 310 ERELYKAKE---QAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLSLEQKDFIR 366
Query: 422 TAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
A+ K L+ +IN++LD +KIEA+KL +E + FNLR ++D +SL K+ KG+EL
Sbjct: 367 EAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPKAVEKGLELYT 426
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+S+ VPE V+GDP R RQI+ NL+ N+VKFT +G I V V
Sbjct: 427 MISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTV 467
Score = 150 bits (378), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 190/410 (46%), Gaps = 67/410 (16%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+E L V+DTGIGI + +F F QAD+ST+R YGGTG+GL+IS LV++M G+
Sbjct: 474 NETAVLNFEVKDTGIGIRKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGE 533
Query: 659 ISFVSRPQVGSTFSFTAVFGKCK-----EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV 713
I S GS F F K ++ FE + G+ ++V++
Sbjct: 534 IHVESIFGKGSIFKFDVRLKIVKRASGQKFAFEKL------------DGMNILIVNDDVN 581
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF 773
+ +L G+ V S ++ SS L+++ K + +I +++ + + SG+
Sbjct: 582 NRKIINSYLQETGLKV---SEAENGSSAITTILSNASTKNKINIAIMD---YQMNDMSGY 635
Query: 774 N-AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
A L P K KLILL + K + K GF+ + + KP+R + AC+
Sbjct: 636 ELANTLKTIPFA---KNIKLILLTSITQKGNAETVKEYGFS-SYLSKPVRRDDLLACIAM 691
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRG----------KKILVVDDNGVNRMVAAGALKKF 882
VL K++ G G HQ + + +IL+V+DN +NR + LK
Sbjct: 692 VLGL--KKENGEG-------HQVITKHIVKEVKNALEPRILLVEDNKMNRKIVITMLKSH 742
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
T + A AL + +D FMD QMP MDG+E T +IR +E
Sbjct: 743 DMTCDVAVDGSEALKAVLQKD-YDVVFMDCQMPVMDGYECTSKIRMLEG----------- 790
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
D+ H I+AMTA+ + ++C+K GMD Y+SKP +++
Sbjct: 791 --------DKKHTTIIAMTANAMDGDSEKCIKTGMDDYISKPINFNKMFK 832
>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1099
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 187/393 (47%), Gaps = 46/393 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGIP AQ R+F FMQ D+ST+R YGGTG+GL+I + L ELM G++ S+P
Sbjct: 619 VRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGK 678
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F + QS + PP G + +VVD+ PV V + L G+
Sbjct: 679 GSRFWMSVPMELLA-------PQSAA---PPDLTGHRVLVVDDNPVNCDVIERQLRAFGV 728
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDC-WISGEDSGFNAQLLDWKPNGH 785
V + DA S LT + P ++ +++ ++G + +++ P
Sbjct: 729 EVH---ACLDAGS-GMGELTRAAAMGTPWEVAVIDSQMPVVTGSEM---VRMMRAIP--- 778
Query: 786 VFKLPKLILLATN-ISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
+ ++I+ ++ + ++ D A D + KPLR S + + +VL +
Sbjct: 779 MLGGSRIIVTSSQGMPAEQQDGQPA---IDAFLHKPLRQSTLLDTIGRVLGLSGPEEQPA 835
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
+ + +ILV +DN VN+ VA G L+K G TV+ AL+ ++
Sbjct: 836 APAEEHNAPDSTAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRL-LP 894
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
+D MD+QMPEMDG EATR IR + S A +PI+AMTA+
Sbjct: 895 YDVVLMDVQMPEMDGLEATRAIRSLASAAA-------------------RIPIVAMTANA 935
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ C GMDGY+SKP + L LAK+
Sbjct: 936 MRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 968
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 120/175 (68%), Gaps = 4/175 (2%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+++E K AEA + KS+FLAT+SHEIRTPMNG++GM LLLDT L+ QR +A+T +
Sbjct: 447 RQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRD 506
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G++L+ +IN++LD +K+EA KL+L+ F L +++ V+ + + ++ KGIE+A +
Sbjct: 507 SGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDP 566
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER----TMVKTDAKD 536
++ V DPGR RQ++ NL GN+VKFTE+G + ++V L ER MV D +D
Sbjct: 567 RLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERPGAQPMVHFDVRD 621
>gi|226947053|ref|YP_002802126.1| Periplasmic hybrid histidine protein kinase, two-component
[Azotobacter vinelandii DJ]
gi|226721980|gb|ACO81151.1| Periplasmic hybrid histidine protein kinase, two-component
[Azotobacter vinelandii DJ]
Length = 1030
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 208/424 (49%), Gaps = 76/424 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIG+ + + ++F F QADSSTSR YGGTG+GL+I K LV +M G+I
Sbjct: 440 VRLRFEVRDTGIGLNETQRRKLFRAFTQADSSTSRQYGGTGLGLAICKHLVAMMDGEIGV 499
Query: 662 VSRPQVGSTFSFTAVFGK--CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S P VGSTF F A F + + + D S DL G++ +VVD+
Sbjct: 500 DSSPGVGSTFHFDARFERQANQRELLAD-----SADL----LGMRVLVVDD--------- 541
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ + L I M S+++ A +TA N + I L+E+ ED+ + ++D
Sbjct: 542 -NASALEIFAGMLSALRFAVTTADNAPQA--------IRLLER---AQQEDNPYRLVIMD 589
Query: 780 W--------KPNGHVFKLPK-----LILLATNISKDECDKAKAGGFADTVIMKPLRAS-- 824
W + G + P+ L ++ T+ +DE + + +++KP+ S
Sbjct: 590 WLMPGMDGVQAVGAIRAAPRIAETPLFVMVTSYGRDELLERLGKVPVEGLLVKPVTPSSL 649
Query: 825 ---MIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
++ AC +++ + N R+A + + + + LRG +L+V+DN VN+ +A L
Sbjct: 650 LDGILDACSRRMRTAPNSRKA---LESEAEQAREALRGVHLLLVEDNPVNQEMAMELLAT 706
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
G V+ A A+ K+ + H +D MD QMP MDGFEATRRIR+
Sbjct: 707 AGIRVDVANDGAEAVGKVMA-HAYDGVLMDCQMPVMDGFEATRRIRR------------A 753
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS- 1000
VD LPILAMTA + + CL GM Y++KP + L+ L + S
Sbjct: 754 GLVD---------LPILAMTASTMAGDRERCLAAGMHAYIAKPIDVAQLFVTLRHWVGSG 804
Query: 1001 KPLS 1004
+PL+
Sbjct: 805 RPLA 808
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 94/142 (66%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA +SHEIRTPMN I+GM L LD+ L QR++ + A ++L+ +IN++LD +
Sbjct: 290 KSDFLANMSHEIRTPMNVIMGMTQLALDSGLDERQRNFVEKAHDAARSLLGIINDILDFS 349
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA K+ E V F L ++ D + L K++ KG+EL ++ VP ++GDP R Q+
Sbjct: 350 KIEAGKMRFEQVDFQLESVTDHLADLSVLKAQEKGLELLFDIATDVPTALIGDPLRLGQV 409
Query: 502 ITNLVGNSVKFTERGHIFVKVH 523
++NL+ N++KFT RG I +++
Sbjct: 410 LSNLLDNAIKFTSRGEITLRIR 431
>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 950
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/410 (30%), Positives = 199/410 (48%), Gaps = 46/410 (11%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V + V D+GIGI Q R+F F QADSST+R YGGTG+GL+ISK LVELM GQ+
Sbjct: 433 EVIIKFEVTDSGIGISEDVQSRLFQAFTQADSSTTRKYGGTGLGLAISKQLVELMGGQVG 492
Query: 661 FVSRPQVGSTFSFTAVFGK---CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
S+P G+TF TA F K C + ++ S G + ++VD+ +
Sbjct: 493 LRSQPGQGTTFWCTARFQKQAVCAPAIVPSVELS----------GRRILIVDDNESNRTI 542
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
+ ++ G+ + +A + +++ + +L D + G+D AQ
Sbjct: 543 LHHLVSGWGMQDGQARHADEAILMLEQA--AAQGRPYDAAVL---DMLMPGKDGLQLAQE 597
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ P G +LI+L + I ++A+ GF + KP+R + CL+ V +
Sbjct: 598 IRAHPQGAGV---RLIVLTSLIQPGHAERARRAGFT-AYLTKPVRHDQLQGCLRVVFGLQ 653
Query: 838 NKRQA-GRGVPNGSSFHQGLL--------RGK-KILVVDDNGVNRMVAAGALKKFGATVE 887
GV G + L+ R + +ILV +DN VN+ +A L + G +
Sbjct: 654 GPATTNAPGVATGPTIVPTLITRHTLAEQRARPRILVAEDNVVNQKLAVRMLDRLGYQPD 713
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
++ + A+ + + A MD QMP MDG+EATRRIR+ E K + GT
Sbjct: 714 IVSNGQEAVAAFER-GLYAAIVMDCQMPTMDGYEATRRIREQEQK---------PAASGT 763
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
H+PI+A+TA+ + + C GMD Y+SKP + ++L R L ++
Sbjct: 764 ----RAHIPIIALTANAMPGDRERCKAAGMDDYLSKPVKTDDLGRLLQRW 809
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 107/143 (74%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS FLA ++HE+RTPMNG++GM +LLL+T L+ QR + T Q CG+A ++LIN+VL+ +
Sbjct: 284 KSSFLAMITHELRTPMNGVIGMASLLLETPLTEEQRSFTNTIQQCGEAQLSLINDVLECS 343
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA KLELE + F LR ++DVLS F+E+++ KG+E+ V VP + GDPGR RQ+
Sbjct: 344 KIEAGKLELEHLDFYLRTTVEDVLSQFAERAQRKGLEITGLVHAAVPNALRGDPGRLRQV 403
Query: 502 ITNLVGNSVKFTERGHIFVKVHL 524
+TN VGN++KFTERG + ++ L
Sbjct: 404 LTNFVGNAIKFTERGEVTLQAFL 426
>gi|384428272|ref|YP_005637631.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
gi|341937374|gb|AEL07513.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
Length = 1364
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 200/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G + L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G + S P GS F F + PP + A++ E R
Sbjct: 849 GGALEVESVPGRGSEFYFVITLERTD---------------PPKAQQEAALLPPESMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + + + ED +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAAMQAIEDATEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ ++ +
Sbjct: 952 VAIARQVRARATPGRH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTSAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q++ K + P+ +F L G ++L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLVDERPKAR-----PSTPTFVARRLEGAQLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A++ L+ +P F MD+QMP +DG+EATRR+RQ+ S A+
Sbjct: 1062 HDGEQAVNTLKRAPDLFHLVLMDVQMPVVDGYEATRRLRQIPSLAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A +A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D ++L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
>gi|434394295|ref|YP_007129242.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428266136|gb|AFZ32082.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 1873
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 144/480 (30%), Positives = 222/480 (46%), Gaps = 91/480 (18%)
Query: 361 VEDDFHKMQELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+E + + QEL++ +AE A AKS FLA +SHEIRTPMN +LGM LLLDT L+ QR
Sbjct: 1132 LEAETRQRQELEIAHRQAELASQAKSSFLANMSHEIRTPMNAVLGMTGLLLDTPLTPEQR 1191
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
D+ QT + G AL++LINE+LD +K+EA ++ELE + F+L +D+VL L + ++ K +
Sbjct: 1192 DFLQTIRTSGDALLSLINEILDLSKLEAGEMELETLNFDLSTCIDEVLELLAPQAHTKNV 1251
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
E+A + VP + GD GR RQ++TNL+ N++KFT G + V L + E
Sbjct: 1252 EIAGLIYRNVPTCLQGDAGRLRQVLTNLINNAIKFTSNGEVVVSAEL----------QSE 1301
Query: 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNG 597
T V +G G+ D N + F +DA + G
Sbjct: 1302 TSTTARIRFTVADTGI-------GISLEDQHNLFSPFTQ-VDA----------STTRKYG 1343
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G TG+G+ + Q M GG
Sbjct: 1344 G------------TGLGLAICRQLVTLM-------------GG----------------- 1361
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I S+ +GS F F F K + + + I+ +DLP L+ +VVD+ V
Sbjct: 1362 EIGVESQVGLGSKFWFEIPFTKQIDLI-QPIQ--GLQDLP----NLRLLVVDDNATNRKV 1414
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDSGFNAQ 776
+ R G+ V + + A T L +S+ D L++ I+G G
Sbjct: 1415 IYHQATRWGMHVDEAENAVVAIDTL---LHASQQNTPYDFALIDMQMPEINGLMLGVQI- 1470
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
K N + LP ++L +TN +DE +AK GFA ++KP++ S + + +L +
Sbjct: 1471 ----KANPKLADLPLIMLTSTN-QRDEVQRAKKIGFA-AYLLKPVKPSRLLNTITNILES 1524
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KIL+ +DN +N+ VA L+ G T + AA+ + L+ ++ +D MD QMP +DG
Sbjct: 1623 KILLAEDNLINQKVALKQLQALGYTADVAANGQEVLELIEKIP-YDLILMDCQMPILDGI 1681
Query: 921 EATRRIRQMESK--ANEQMMNGGSSVDGTAKRDELHLPIL-AMTADVIHATFDECLKCGM 977
AT IR+ E ANE+ PI+ AMTA+ + CL GM
Sbjct: 1682 AATIEIRRWEKSRFANERQ------------------PIIVAMTANAMQEDQQMCLDAGM 1723
Query: 978 DGYVSKPFEEENL 990
+ Y+SKP +E L
Sbjct: 1724 NDYLSKPVIKEKL 1736
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 854 QGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL----QSPHCFDA 907
QGL L ++LVVDDN NR V ++G V+ A +A A+D L Q +D
Sbjct: 1392 QGLQDLPNLRLLVVDDNATNRKVIYHQATRWGMHVDEAENAVVAIDTLLHASQQNTPYDF 1451
Query: 908 CFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967
+D+QMPE++G +I KAN ++ + LP++ +T+
Sbjct: 1452 ALIDMQMPEINGLMLGVQI-----KANPKLAD---------------LPLIMLTSTNQRD 1491
Query: 968 TFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
K G Y+ KP + L + +S+
Sbjct: 1492 EVQRAKKIGFAAYLLKPVKPSRLLNTITNILESR 1525
>gi|406952533|gb|EKD82114.1| hypothetical protein ACD_39C01476G0002 [uncultured bacterium]
Length = 976
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 194/415 (46%), Gaps = 37/415 (8%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+N+ DV L V+DTGIGI R+F FMQ D ST+R YGGTG+GL+IS
Sbjct: 466 ILNVKVDEEHEHDVMLRFVVKDTGIGIAPDHLSRLFTAFMQVDGSTTRKYGGTGLGLAIS 525
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVV 707
+ L ELM G I S P VGS F FTA F + + ++ E LP G++ ++
Sbjct: 526 RQLAELMGGNIGVTSEPGVGSEFWFTAKFTRQDD-------ENVPESLPMADITGIRILI 578
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
VD+ V + L G ++ K A L +E + P + + D +
Sbjct: 579 VDDHAVNRLLVSNLLTSWGCRYSEAADGK----AALEMLEIAEAEGDPYYVAL-LDMLMP 633
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
D + + P +LILL + + + + GFA + KPLR S +
Sbjct: 634 TMDGRALCEKIKSNPK---LASTRLILLTSLGQRGDAEWIHKVGFAG-YLTKPLRQSQLH 689
Query: 828 ACLQQVLSTENKRQAG--RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
CL V+ + + + + R +IL+V+DN N+ VA LKK G
Sbjct: 690 DCLSMVVGMTDVQNVSLTSELITRHRVLEAHRRNVRILLVEDNITNQEVALITLKKLGYR 749
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
+ A + AL +L S H + MD QMPEMDGFEAT IR G ++V
Sbjct: 750 ADLATNGIEAL-RLLSEHNYSMVLMDCQMPEMDGFEATENIRA-----------GRNNVL 797
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+A +PI+AMTA+ + + C++ GM+ Y++KP + L +L ++ S
Sbjct: 798 NSA------VPIIAMTANAMQGDRERCIEAGMNDYIAKPVQPAELLGKLNQWLHS 846
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 113/157 (71%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
EL +AE A+VAKS+FLA +SHEIRTPMNGI+GM +LLL+T L++ Q+ YA + +
Sbjct: 317 ELAHQAEQANVAKSEFLANMSHEIRTPMNGIIGMSSLLLETTLTAEQKQYADVVRSSCEN 376
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L++L+N++LD +KIEA KL LE + F+LR L+D + + K+ K IELA V+ + P
Sbjct: 377 LLSLVNDILDFSKIEAGKLSLEHINFDLRTTLEDAFEMLAIKAHEKKIELACVVAPETPS 436
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+ GDPGR RQII NLVGN++KFT++G + + V + E
Sbjct: 437 LLHGDPGRLRQIILNLVGNAIKFTDQGEVILNVKVDE 473
>gi|406836798|ref|ZP_11096392.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
Length = 800
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 185/388 (47%), Gaps = 46/388 (11%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
DV L V DTGIGIP Q +F F Q DSST+R YGGTG+GL+I+ LV LM G++
Sbjct: 440 DVRLHFSVRDTGIGIPADKQHLLFNAFSQVDSSTTRRYGGTGLGLAITARLVRLMDGEVW 499
Query: 661 FVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
S GSTF FTA F + FE + K L+ ++VD+ +
Sbjct: 500 VESESGRGSTFHFTARFALATVPKPAFEPLA---------SLKDLRVLIVDDNATNRLIL 550
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQL 777
Q LN M + D++ A L+ S +P D++L D + D GF +L
Sbjct: 551 QEILNSWA----MRPTAVDSAPAALQELSRSIQANEPYDLVL--SDVHMPDVD-GF--EL 601
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
F +++L++ S + + + G A +MKP++ S + + L
Sbjct: 602 ASTIRQDRRFHSTVIMMLSSGASSGDAARCRELGAA-AHLMKPIKQSDLHLTIATTLGNA 660
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
KR A + S+ +IL+ +D N+ +A G LKK+G TV A + + A++
Sbjct: 661 AKRAAQQSTKIDSTCPP-----LRILLAEDGYANQTLAVGVLKKWGHTVTIANNGQEAIE 715
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
+ FD MD+QMPE+DGF+AT IR E A+ H+PI
Sbjct: 716 AWER-EPFDVILMDVQMPEIDGFQATIAIRAKEQGADR------------------HIPI 756
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPF 985
+AMTA+ + +ECL GMD Y++KP
Sbjct: 757 IAMTANAMKGDREECLAAGMDEYIAKPI 784
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 118/174 (67%)
Query: 349 YILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL 408
+ + G AI I + ++ +++ K AE+A+ AKS FLA +SHEIRTPMN ++GM L+L
Sbjct: 258 HAVLGIAIDITERKEMEEALRKAKEAAESANRAKSAFLANMSHEIRTPMNAVIGMTDLVL 317
Query: 409 DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLF 468
DT+L+ Q Y + + ++L+ LIN++LD +KIEA KLEL+ F+LR +L D +
Sbjct: 318 DTELNDLQDSYLKIVKDSAESLLRLINDILDFSKIEADKLELDQTPFSLRDLLGDAIKTL 377
Query: 469 SEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ + + +ELA V+ VPE++ GDP R RQ++TNL+ N+VKFTERG I ++V
Sbjct: 378 ALQVQGDELELACHVTPDVPEYLTGDPYRLRQVVTNLIANAVKFTERGEIVLQV 431
>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
Length = 1436
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 199/410 (48%), Gaps = 53/410 (12%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E + L V DTGIG+ ++F PF QAD ST+R +GGTG+GL+I + LVELM G+I
Sbjct: 852 EKLQLKFSVRDTGIGMTTEQAAKLFQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRI 911
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S P GSTF FT +Q + +P L+ +VVD+ P + +
Sbjct: 912 WLESEPGAGSTFYFTVWLSIGN-------RQGTGKIIPEKLAELRVLVVDDNPAACEILE 964
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLL 778
L + V + +S KDA + K +D +P DI+ + D + G D ++ +
Sbjct: 965 EPLANIVKRVDVVASGKDAITAVKQ-----KDASEPYDILFM--DWRMPGMDGLQTSRFI 1017
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
K + + P ++L+ T ++E + D ++KP+ SM L V S
Sbjct: 1018 --KSDETLRHQPHIVLV-TAFGREEVREEAERLQLDGFLVKPVTRSMTVDMLVNVFS--- 1071
Query: 839 KRQAGRGVPNGSSFHQGL-LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+A + + Q LRG +IL+ +DN +N+ +A L+ GATV A + A+
Sbjct: 1072 --EASQEISVSVEEEQAAKLRGARILLAEDNDINQQIAVELLEGAGATVNVANNGLEAVG 1129
Query: 898 KL---QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
+ P FD MD+QMPEMDG++AT ++R A
Sbjct: 1130 IVFNGPQPPPFDVVLMDLQMPEMDGYQATAKLRADPRFAT-------------------- 1169
Query: 955 LPILAMTADVIHATFDE---CLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LPI+AMTA HAT +E C+ GM+ ++SKP + NL+ + +F+K K
Sbjct: 1170 LPIIAMTA---HATIEERQRCIAAGMNDHISKPIDPANLFETVGRFYKPK 1216
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 358 IVKVEDDFHKMQEL---KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS 414
+V + D +EL K +AE A KS FLA +SHEIRTPMN I+G+ L L T L+
Sbjct: 677 LVDISDQKRVAEELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTP 736
Query: 415 TQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRN 474
QRDY G +L+A+IN++LD +KIEA KL+LE V F L ++ V +L ++K+
Sbjct: 737 KQRDYIGKVHNAGTSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAHE 796
Query: 475 KGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDA 534
KG+E V+ +PEF+LGDP R QI+TN V N+VKFTERG I + + L ERT K
Sbjct: 797 KGLEFLAHVTPGIPEFLLGDPLRLGQILTNFVNNAVKFTERGEIRLNIELIERTGEKLQL 856
Query: 535 K 535
K
Sbjct: 857 K 857
>gi|392408843|ref|YP_006445450.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621979|gb|AFM23186.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1390
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 197/410 (48%), Gaps = 33/410 (8%)
Query: 592 MMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651
++ S + TL V DTGIGIP Q+ +F F Q D+ SR YGGTG+GL+I L
Sbjct: 890 IVESASTPNETTLHFSVSDTGIGIPEDKQQEIFSSFTQVDTGMSRRYGGTGLGLAIGSRL 949
Query: 652 VELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711
+M G++ S+ GSTF A F + +E + +++S D GL +VVD+
Sbjct: 950 AAMMDGKLWVESKIGNGSTFHLMAKF-EIQENSTDRLQES---DTRFNLMGLPVLVVDDN 1005
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
+ + L G M+ + + +S A + ++ P +L D + D
Sbjct: 1006 ATNLRILKEILTGFG----MNPTCVNEASAALTAVKEAQKTESP-FLLTILDANMPEMD- 1059
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
GF + G + P +++L ++ ++ + ++ K G + + KP++ + + +Q
Sbjct: 1060 GFELSRTIVETTGS--RGPVIMMLTSSRNRGDSERCKQCGIS-IYLKKPIKQAELFNAIQ 1116
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L +K P R KIL+V+DN VN+ +A L+K G TV A++
Sbjct: 1117 MTLGIAHKPDES-NQPVAECIAGERRRLLKILLVEDNPVNQTLALRLLEKRGCTVSIASN 1175
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
K AL L++ FD MDI+MPEM+GFE T+ IR E + E
Sbjct: 1176 GKEALKSLEA-ESFDLILMDIEMPEMNGFETTQAIRNAEQSSGE---------------- 1218
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
H+PI+AMTA + + CL GMDGYVSKP + L+ + KF + +
Sbjct: 1219 --HIPIIAMTAHAMTGDRERCLDAGMDGYVSKPVDSRELFFTIDKFTQDR 1266
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 4/183 (2%)
Query: 340 LFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399
L V + G G +++ V D + E K+ AE+A AKS FLAT+SHEIRTPM+G
Sbjct: 711 LRVQPIFSGNHYMGVILNVTDVSD----LVEAKLAAESASKAKSDFLATMSHEIRTPMHG 766
Query: 400 ILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459
I+GM LL+ T LS Q +Y + + G +L+ LIN++LD +KIEA K ELE + F LRA
Sbjct: 767 IIGMTELLMQTQLSREQTEYLEIIKASGDSLLRLINDILDFSKIEAGKFELEHIGFGLRA 826
Query: 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
+L + + + ++ KG+ELA VS +VP+ + GDP R RQII NLVGN++KFT G +F
Sbjct: 827 MLGETMESLAIQAHQKGLELAFRVSPEVPDVLKGDPVRLRQIIVNLVGNAIKFTSAGEVF 886
Query: 520 VKV 522
+ V
Sbjct: 887 MDV 889
>gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio sinaloensis DSM 21326]
gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio sinaloensis DSM 21326]
Length = 1198
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 188/638 (29%), Positives = 291/638 (45%), Gaps = 130/638 (20%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
A +A+ AKS FLA +SHEIRTPMN I+GM L L TDL+ Q
Sbjct: 474 ANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQ------------------ 515
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
R I KL +++L + ILD FS+ K L + D E VL +
Sbjct: 516 -----RNYIHKVKLSADSLLGLINDILD-----FSKIEAGK---LDIEQVDFQLENVLDN 562
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
I+NLVG ++ +ERG + + +H+ ER + T L G R G
Sbjct: 563 -------ISNLVG--LRASERG-LELLIHI-ERDV-------PTALVGDP----LRLGQV 600
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLMVCVEDTGI 613
N LS +A F I I + + E++ L V D+GI
Sbjct: 601 LIN-LSN-----------------NAVKFTERGEIKITVSVAERSGENIRLKFRVSDSGI 642
Query: 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSF 673
G+ +++F F QADSST+R YGGTG+GL+ISK L +LM G I S VGSTFSF
Sbjct: 643 GMTPEQTQKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVESEAGVGSTFSF 702
Query: 674 TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSS 733
T + + + +KQ ++ +P LK ++VD+ + + L L + + S
Sbjct: 703 T-----IQTQISQALKQEQTV-VPKEIGKLKVLIVDDNASARIILEDILLSLKLECQQVS 756
Query: 734 SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLI 793
+ DA + LT++ P +L+ D + G+D G + + + + PK++
Sbjct: 757 NADDALT----ALTTAASDGAPFDLLI-SDWQMPGKD-GIDL-IESMQQAFSSVQQPKVL 809
Query: 794 LLATNISKDECDKA------KAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG-- 845
+L T ++E +A + G D KP+ AS + + + EN+R RG
Sbjct: 810 ML-TAYGREELSEALQKRHIELPGLLD----KPVTASHLFDAIIALYGVENER-LSRGEV 863
Query: 846 -----VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ N S L G ++L+V+DN +N+ +A L+ + A + + A+D Q
Sbjct: 864 EEQLQLANVQS-----LAGAQLLLVEDNEINQELATELLEGQQIHITIAENGQQAVDLYQ 918
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ FD MD QMP MDG+EAT IR Q+ N +PI+AM
Sbjct: 919 TQE-FDGILMDCQMPIMDGYEATEYIRH-------QLGNS-------------QIPIIAM 957
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
TA+V+ ++ GM+ ++KP + +++ LAK+
Sbjct: 958 TANVMERDKEKAQASGMNDIIAKPIDVGSMFSTLAKWI 995
>gi|427711822|ref|YP_007060446.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
gi|427375951|gb|AFY59903.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
Length = 896
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 195/412 (47%), Gaps = 53/412 (12%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G E L V+DTGIGIP +A ++F PF Q D+ST+R YGGTG+GL+I + +VE+M G
Sbjct: 523 GEEQTRLQFKVQDTGIGIPAAALPKLFQPFTQVDASTTRKYGGTGLGLAICRQIVEMMGG 582
Query: 658 QISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
+I S VGS F F F G + + PPG G + ++VD+
Sbjct: 583 EIGVESTEGVGSCFWFEIPFPLGTAADPLVA----------PPGLVGKRVLLVDDNQTNL 632
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW-ISGEDSGFN 774
+++YHL G+ V + S + A + S DI L++ + G G
Sbjct: 633 EISRYHLRHWGLEVLTAMSAQAALEVLTHNHASG---LGVDIALLDMQMPDVDGLTLGRQ 689
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
+ L W +P ++L + + +C +A+ D ++KP+R S + L +L
Sbjct: 690 IRQLAWTQT-----IPLVMLTSLGQTDPQC-RAE----FDAYLVKPVRPSRLFNTLIALL 739
Query: 835 STENKRQAGRG---VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+ + VP S H +ILV +DN N+ VA L G + ++
Sbjct: 740 TPPAATLSPTPISEVPITPSEH-----SLRILVAEDNITNQKVALRQLNNLGYHADVVSN 794
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A+ ++ +D FMD QMPEMDGFEATR+IR E ++
Sbjct: 795 GLEAVLAWET-VGYDLIFMDCQMPEMDGFEATRQIRAKE------------------QQT 835
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
H+PI+A+TA+ + C GMD Y+SKP +++L +L ++ + PL
Sbjct: 836 ATHVPIIALTANAMPEDRQRCYGAGMDDYLSKPVRKQDLAAKLQQWGQRPPL 887
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 102/144 (70%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
K+ F+AT+SHEIRTP+N I+GM LLL+T L + QRDY +T ++ + L+ +INE+LD +
Sbjct: 366 KTSFMATMSHEIRTPLNAIVGMTGLLLETRLDAEQRDYVETVRLGSENLLTVINEILDFS 425
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA +++LE V FNL+A +D+V+ L + + K +ELA V VP ++ GD R RQ+
Sbjct: 426 KLEAHEMQLEMVNFNLQACVDEVVDLLAGNAHRKNLELAALVEYDVPAWLQGDESRLRQV 485
Query: 502 ITNLVGNSVKFTERGHIFVKVHLA 525
+ NLV N++KFT G + ++V LA
Sbjct: 486 LVNLVNNALKFTAVGEVVIRVSLA 509
>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
SK209-2-6]
gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
SK209-2-6]
Length = 732
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 208/398 (52%), Gaps = 46/398 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V+DTGIGIP S + +F F Q +S T+R Y G G+GL+ISK L+ELM G + S+
Sbjct: 344 VQDTGIGIPASKVDTIFDVFEQVNSETTRRYDGAGLGLAISKKLIELMGGTLGVTSKLGE 403
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F+F C+ E+ + S ++LP +G++ +VVD+ +NRL I
Sbjct: 404 GSEFTFALPLESCEP--VEEPRVSLEQELP---QGIRVLVVDD---------LEVNRL-I 448
Query: 728 MVKMSSSIKDASSTAKNGLTSSE--DKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNG 784
+ K +S + A+NG + E +K +P D+ ++ D + G D + P+
Sbjct: 449 LQKTLTSWQAQVVLAENGPHALECLEKEEPFDLAIL--DFQMPGMDGNMLLERFREHPSA 506
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR 844
K+P ++L + + D K K GFA + ++KP+RA+ + L + +T + G
Sbjct: 507 Q--KMPVVLLSSVDAGLDS-GKTKGLGFAAS-LLKPMRAARLKQVLLGIFATPSAE--GS 560
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPH 903
S L G +ILV +DN N++V ++K GA VE A+ +AA++ QSP
Sbjct: 561 VCNERKSLDDYDLNGVRILVAEDNRTNQLVIRKMIEKHGAEVEICANGQAAVESFAQSPP 620
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
D MD+ MPEM+G+EATRRIR+ E+ A + +PILA+TA+
Sbjct: 621 --DLVLMDVSMPEMNGYEATRRIREGETLAQQP-----------------PVPILALTAN 661
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
++CL+ GM ++SKP + + +++ ++ +K
Sbjct: 662 ATPKDREKCLQSGMTDFLSKPVRKAVVLQKIEEYLAAK 699
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 92/143 (64%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
K+ FLA +SHEIRTPMNG++GM LL +TDL+ QR +T AL++L+N+VLD +
Sbjct: 191 KTAFLANMSHEIRTPMNGVIGMAELLEETDLNEEQRMCTKTVVESSNALLSLVNDVLDFS 250
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K +A K+ + F+L L +L + + K IE+ + + D P + LGD GR RQ+
Sbjct: 251 KADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGRLRQV 310
Query: 502 ITNLVGNSVKFTERGHIFVKVHL 524
+ NLVGN++KFTE G + +K+ +
Sbjct: 311 LINLVGNAIKFTETGFVLIKLEV 333
>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
Length = 1398
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 212/443 (47%), Gaps = 53/443 (11%)
Query: 579 DAEGFQSNASI---INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTS 635
+A F N ++ ++M + N G D L V+DTGIGIP + +R+F F Q D+ST+
Sbjct: 994 NAIKFTQNGNVTVAVSMQSENNG--DAVLRFSVKDTGIGIPEAKLDRLFKSFTQVDASTT 1051
Query: 636 RHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED 695
R YGGTG+GL+IS+ LVELM G+I +S GS F FT K Y S E
Sbjct: 1052 RKYGGTGLGLAISRQLVELMGGKIGVISHEGNGSEFWFTIFLKKQPFY-------STIET 1104
Query: 696 LP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQ 754
P F G++A+VVD+ + + L+ L I V +S DA+ S D F
Sbjct: 1105 QPTSAFAGIRALVVDDNAANRKMLKALLSSLDIRVTEASG-GDAALGELRSAFKSGDPFA 1163
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
II D + D Q + + + +L L++ + ++ ++ GF+
Sbjct: 1164 LAII----DMQMPDMDGFMLGQTI---KEDLLLRNTELFLMSPVGTLNQREEYHRAGFSA 1216
Query: 815 TVIMKPL-RASMIAACLQQVLSTENKRQAGRGVPNGSS----------FHQGLLRGKKIL 863
+ KP+ + ++AA + V + +N Q+G P+ S G L +IL
Sbjct: 1217 N-LSKPVGQLELVAAINKVVFNHDN--QSGSRNPSISYPVTEEGEPPMVPVGKLEHYRIL 1273
Query: 864 VVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT 923
+ +D+ VN+MV G L KFG V+ ++ + +D LQ +D MD+QMP MDG AT
Sbjct: 1274 LAEDSRVNQMVVIGVLTKFGYGVDVVSNGQECVDVLQK-RTYDLVLMDVQMPVMDGLNAT 1332
Query: 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
IR SK + ++P++A+TA + + CL GM+ Y+SK
Sbjct: 1333 GIIRDPASKVLDH-----------------NIPVIALTAHAMQGDRESCLYAGMNDYISK 1375
Query: 984 PFEEENLYRELAKFFKSKPLSGA 1006
P + L ++K+ KP S A
Sbjct: 1376 PIDASVLTETISKWLPVKPDSPA 1398
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 109/150 (72%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE+A+ AKS+FLA +SHEIRTPMNG++GM LLLDTDLS QRD+A G++L+ +I
Sbjct: 861 AESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDLSDEQRDFADMLLASGESLLTVI 920
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KLELE ++F+LR +L+ ++ K+ K +E VS +VP F GD
Sbjct: 921 NDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKNLEFNCVVSPEVPVFFKGD 980
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
PGR RQI+ NL GN++KFT+ G++ V V +
Sbjct: 981 PGRIRQILNNLAGNAIKFTQNGNVTVAVSM 1010
>gi|334129853|ref|ZP_08503656.1| Sensor protein [Methyloversatilis universalis FAM5]
gi|333444889|gb|EGK72832.1| Sensor protein [Methyloversatilis universalis FAM5]
Length = 871
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 212/456 (46%), Gaps = 77/456 (16%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKSQFLA +SHEIRTPMNG+LGM LLL ++L+ QR Y +T G+ L+ L+N++LD
Sbjct: 228 AKSQFLANMSHEIRTPMNGVLGMAQLLLRSELNGEQRRYLETLYRSGENLLDLLNDILDL 287
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIEA + +L F+ R L +V L S ++R KG+ LA+ V D +P + GDPGR RQ
Sbjct: 288 SKIEAGRFDLVRSEFDPRRTLREVTELLSAQAREKGLTLALDVDDAIPARIEGDPGRLRQ 347
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLS 560
I NL+GN++KFTE G +F+ + A D+ LL G R +T
Sbjct: 348 IAVNLIGNAIKFTEHGGVFIALR-------AHSADDDLLLKERPTSGSIRMVMAVRDTGI 400
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
G+ D +D F
Sbjct: 401 GIADGDHGRVFDAFA--------------------------------------------- 415
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680
QAD++ SR +GGTG+GL+IS+ L E++ G I+ S +GSTF+ T + K
Sbjct: 416 --------QADNTASRRFGGTGLGLAISRQLAEMLGGSIALRSAQGIGSTFTLT-LPCKV 466
Query: 681 KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS 740
+D S P G ++V++ V A V + L G+ V + + A
Sbjct: 467 VNTTLDDSHSGLSLPKLPRLAG-SVLLVEDSAVNAEVASHMLQAFGLRVTQAHDGRQALQ 525
Query: 741 TAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNIS 800
++ +F D++L+ DC + G D GF A + + LP L+A
Sbjct: 526 QLEHA------RF--DVVLM--DCQMPGMD-GFEA-CKRIRDREQLVGLPATPLIALTAG 573
Query: 801 KDECDKAK--AGGFADTVIMKPLRASMIAACLQQVL 834
++ D+ A G D + KP R + A +++ L
Sbjct: 574 ANDGDRENCIAAGM-DDYLAKPFREDDLYAIVRKWL 608
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 18/144 (12%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+V+D+ VN VA+ L+ FG V A + AL +L+ FD MD QMP MDGFE
Sbjct: 490 VLLVEDSAVNAEVASHMLQAFGLRVTQAHDGRQALQQLEHAR-FDVVLMDCQMPGMDGFE 548
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
A +RIR EQ++ ++ P++A+TA + C+ GMD Y+
Sbjct: 549 ACKRIRD-----REQLVGLPAT------------PLIALTAGANDGDRENCIAAGMDDYL 591
Query: 982 SKPFEEENLYRELAKFFKSKPLSG 1005
+KPF E++LY + K+ +SG
Sbjct: 592 AKPFREDDLYAIVRKWLPDGAVSG 615
>gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. campestris str.
B100]
gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. campestris]
Length = 1364
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 201/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G + L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G + S P GS F F + PP + A++ E R
Sbjct: 849 GGALEVESVPGRGSEFYFVITLERTD---------------PPKAQQEAALLPPESMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + + + ED +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAAMQAIEDATEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ ++ +
Sbjct: 952 VAIARQVRARATPGRH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTSAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q++ ++R R P +F L G ++L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLV---DERPNAR--PATPTFVARRLEGAQLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A++ L+ +P F MD+QMP +DG+EATRR+RQ+ S A+
Sbjct: 1062 HDGEQAVNTLKRAPDLFHLVLMDVQMPVVDGYEATRRLRQIPSLAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A +A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D ++L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
>gi|333996439|ref|YP_004529052.1| multi-sensor hybrid histidine kinase [Treponema azotonutricium
ZAS-9]
gi|333735154|gb|AEF81103.1| multi-sensor hybrid histidine kinase [Treponema azotonutricium
ZAS-9]
Length = 711
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 203/407 (49%), Gaps = 64/407 (15%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
T+ + + DTGIG+ + R+F F QA++STSR YGGTG+GL+ISK +VE+M G I
Sbjct: 352 TIQISISDTGIGLSEEQKGRLFSSFQQAENSTSRKYGGTGLGLAISKRIVEMMGGSIWIE 411
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PG--FKGLKAVVVDEKPVRAAVTQ 719
S P GS+F FT + + S+ + +P PG + +K + VD+ P
Sbjct: 412 SEPGKGSSFIFT----------MQVPRGSEDQQVPVPGRNWDNVKVLAVDDDP------- 454
Query: 720 YHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ L ++++ I DA+S +++ L +K DI V+ W + G N
Sbjct: 455 ---DTLEYFMQIAEQIGFACDAASGSEDALRLIAEKGAYDIYFVD---W---KMPGMNGI 505
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECD----KAKAGGFADTVIMKPLRASMIAACLQQ 832
L + G + K +++ IS E D +AKA G D + KPL S I + +
Sbjct: 506 ELARQIKGKEEQAAKSVIIM--ISATEWDLIQGEAKAAG-VDKFLSKPLFPSPIVDSINE 562
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L T A R + G + +G IL+V+D +N+ + L+ T++CA +
Sbjct: 563 CLGT----GAIREIQTGETVS---YKGHCILLVEDVEINQEIVLTLLEPTCLTIDCADNG 615
Query: 893 KAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
AL +P +D FMD+QMPEMDG+EATRRIR +E+ +
Sbjct: 616 AKALSMFSAAPEKYDMIFMDVQMPEMDGYEATRRIRALENVPHAA--------------- 660
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA+V + CL GM+ +V KP + + ++++L K+
Sbjct: 661 --SIPIVAMTANVFREDVERCLAAGMNDHVGKPIDMDEIFKKLQKYI 705
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 7/153 (4%)
Query: 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA-QTAQICGKALIALINEV 437
++AKS FLAT+SHE+RTPMN I+GM ++ ++DY + + L+ +IN+V
Sbjct: 197 NLAKSTFLATMSHEMRTPMNAIIGMTSIG-KAAPGLERKDYCFKKIEEASTHLLGVINDV 255
Query: 438 LDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGR 497
LD +KIEA KLEL FN +L +++ + + K + V++ K+P ++GD R
Sbjct: 256 LDMSKIEANKLELSPESFNFEKMLQKTVNVINFRVSEKQQDFTVYIDAKIPSIIIGDDQR 315
Query: 498 FRQIITNLVGNSVKFT-ERGHIFVKVHLAERTM 529
Q+ITNL+ N+VKFT E+G ++HL R +
Sbjct: 316 LAQVITNLLSNAVKFTPEKG----RIHLDSRLL 344
>gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 1364
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 201/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G + L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G + S P GS F F + PP + A++ E R
Sbjct: 849 GGALEVESVPGRGSEFYFVITLERTD---------------PPKAQQEAALLPPESMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + + + ED +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAAMQAIEDATEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ ++ +
Sbjct: 952 VAIARQVRARATPGRH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTSAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q++ ++R R P +F L G ++L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLV---DERPNAR--PATPTFVARRLEGAQLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A++ L+ +P F MD+QMP +DG+EATRR+RQ+ S A+
Sbjct: 1062 HDGEQAVNTLKRAPDLFHLVLMDVQMPVVDGYEATRRLRQIPSLAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A +A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D ++L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
>gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 1624
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 190/413 (46%), Gaps = 61/413 (14%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIG+ R+F F QAD+ST+R +GG+G+GL+ISK L ELM G++
Sbjct: 1025 VLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVGA 1084
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF + + +C E + LPP + + ++VD+ AAV
Sbjct: 1085 ESAVGEGSTF-WVMLPLECAESALH------APPLPPALRNGRVLIVDDNHTAAAVLSEM 1137
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L +G + S A + A + L +D GE G L+DW+
Sbjct: 1138 LRNMGFETRESH----AGAQALDML---------------RDAAADGEPYGL--LLIDWR 1176
Query: 782 PNG----------HVFKLPKL--ILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
G H L + +L+ T +DE A +TV++KP+ AS++
Sbjct: 1177 MPGMDGIELARRIHELGLDQAPQMLMVTAYGRDEIMPAAREQGIETVLVKPVSASLLYDT 1236
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
L Q L+ LRG +L+V+DN +N++VA L+ G V+ A
Sbjct: 1237 LAQPLAHGWLPAHAHLARPDDDQPPPQLRGASVLLVEDNELNQLVAVELLRGAGFIVDVA 1296
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
A +AALD + +D MD+QMP MDG ATRR+R A
Sbjct: 1297 AHGQAALDCVAHTE-YDVVLMDMQMPVMDGETATRRLRTDPRHAR--------------- 1340
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
LPI+AMTA+ + A C + GM+ +V KP E L+R LA++ + +P
Sbjct: 1341 -----LPIIAMTANAMEADRRRCFEAGMNDHVPKPIEPGMLWRALARWVRPRP 1388
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E + + +EL AE KS FLA +SHEIRTPMN I+GM L L + L+ Q DY
Sbjct: 856 RAERELRRAKEL---AEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLTPRQADY 912
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q G+ L+ +IN++LD ++IEA KL +E F L +L+ + + K+ KG+EL
Sbjct: 913 VAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGYKAGVKGLEL 972
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+ V+ VP ++GD R QI+ N N++KFTERG I V+V + ER
Sbjct: 973 VLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVER 1020
>gi|451947711|ref|YP_007468306.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451907059|gb|AGF78653.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 714
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 203/406 (50%), Gaps = 43/406 (10%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+++ L + DTGIGI S E +F F Q D +T+R YGGTG+GLSI + + LM G++
Sbjct: 345 KNIKLHALIRDTGIGIDSSKCESIFEAFKQEDGTTTRKYGGTGLGLSICRKIASLMDGRV 404
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GSTF FTA+ K + +KQ E G + ++VD+ +
Sbjct: 405 WVESTKGKGSTFHFTAMMRKSSISRAKTLKQLDLE-------GTRMLIVDDNAANNEILV 457
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLL 778
+ LN GI ++++ D + T L +E+ P D+ +++ +GF +
Sbjct: 458 HLLNNAGI---KTTALLDETQTMAT-LKEAEECGAPFDLAIIDLQMPTI---TGFELARI 510
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST-- 836
+ N +P L T+ ++ K K GF + KP R +++ L + L T
Sbjct: 511 IRESNLKSRDIP--FLAYTSSTEKIAKKCKDAGFT-AFLNKPARRAILLRTLSRTLGTGG 567
Query: 837 -ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
E A + + S + + + +IL+V+DN VN+ +A+ L K G VE AA+ K A
Sbjct: 568 DEIDPAAEKKLVTQYSVREEIKQSIRILLVEDNLVNQKLASMILTKAGYNVEVAANGKIA 627
Query: 896 LDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
+D S P FD MD+QMPEMDG+EATR+IR++ G +S+
Sbjct: 628 VDMFSSTPDLFDTILMDVQMPEMDGYEATRQIRKL----------GYTSI---------- 667
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
PILAMTA+ + + CL+ GM+ Y++KP + + ++ L K+ S
Sbjct: 668 -PILAMTANAMKGDRELCLEAGMNDYITKPIKRDIVFNMLDKWLNS 712
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 114/168 (67%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
++E ++++ KV AE+A VAKS+FLA++SHEIRTPMNG++G +LL T+L QRD
Sbjct: 174 TEIELQTKELRKAKVAAESASVAKSEFLASMSHEIRTPMNGVIGFTEMLLQTELDEEQRD 233
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
A+T + G+AL+ LIN++LD +K+EA ++ LE + F+ DV L + K IE
Sbjct: 234 SAETIKRSGEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELVRPRVSGKPIE 293
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+ + D +P V GDPGRFRQ++ NL+GNS KFTE+G + + +++ E
Sbjct: 294 VLCKIDDNLPANVCGDPGRFRQVLLNLLGNSAKFTEKGELELTINVEE 341
>gi|452962752|gb|EME67859.1| sensor protein barA [Magnetospirillum sp. SO-1]
Length = 1606
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 196/412 (47%), Gaps = 66/412 (16%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
DV L V DTGIG+ + R+F F QAD+ST+R +GGTG+GL+IS+ L ELM G++
Sbjct: 1116 DVLLRFEVRDTGIGLTGEQKARLFQSFQQADTSTTRKFGGTGLGLAISRKLAELMGGEVG 1175
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVTQ 719
S P GSTF FTA GK K ++ LP +G + +VVD+ AV
Sbjct: 1176 VDSVPGQGSTFWFTARLGKGK---------PRAPLLPEAELRGRRMLVVDDNENARAVLA 1226
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L + V DA + + + + D D + LD
Sbjct: 1227 EMLGAMSFEV-------DAVDSGEAAIAAIRDAVL---------------DRPYEVVFLD 1264
Query: 780 WK-PN---------GHVFKL--PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
W+ P+ H +L P +++ T ++E + V++KP+ + +
Sbjct: 1265 WQMPDLDGLEVAERLHAIRLPFPPHLIMVTAYGREEVMRGAQAADIGEVLIKPVNPAALF 1324
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
+ +V + +++R G + G L G ++L+V+DN +N+ VA L+ G VE
Sbjct: 1325 DSIMRVFAADDRRSEEVPEAEGPTGDLGGLLGVRVLLVEDNELNQEVAGEILRDAGLVVE 1384
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A + + A+DK+ + +D MD+QMP MDG ATR IR++
Sbjct: 1385 IAENGRIAVDKVMA-GAYDMVLMDMQMPVMDGVTATREIRRLGFG--------------- 1428
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LPI+AMTA+ + A ++CL+ GM+ +++KP + + ++ L K+ +
Sbjct: 1429 ------DLPIIAMTANAMQADKEKCLEAGMNDHLAKPIDPDAMFATLLKWRR 1474
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 96/152 (63%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A K+ FLA +SHEIRTPMN I+GM L L T+++ Q+DY + Q G+ L+ +I
Sbjct: 960 AEDAARTKADFLANMSHEIRTPMNAIIGMAHLALKTEMTPRQKDYVRKIQQSGQHLLGII 1019
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL +E +L +LD+V +L SEK+ KG+EL + VP + GD
Sbjct: 1020 NDILDFSKIEAGKLAVENCEVHLDKVLDNVSNLVSEKASAKGLELLFDIGPGVPLDLTGD 1079
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
R Q++ N N+VKFTE G I V V L E
Sbjct: 1080 SLRLGQVLINYANNAVKFTETGEIVVAVRLLE 1111
>gi|410724306|ref|ZP_11363504.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
gi|410602311|gb|EKQ56792.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
Length = 949
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 111/151 (73%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
KV AEAA++AKSQFLA +SHEIRTP+NGI G L LL ++LS Q+++ + A+ + L+
Sbjct: 317 KVEAEAANIAKSQFLANMSHEIRTPINGIFGFLELLETSNLSLEQKEFIREAKSASEMLL 376
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA+KL +E++ FNLR ++D +SL K+ NKGIEL + VPE V
Sbjct: 377 YIINDILDFSKIEAKKLTMESIEFNLRTAIEDAVSLLVPKATNKGIELYSMIKANVPEVV 436
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+GDP RF+Q++ NL+ N+VKFTE G I V +
Sbjct: 437 IGDPSRFKQVLNNLISNAVKFTESGEISVAI 467
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 188/385 (48%), Gaps = 49/385 (12%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V+DTGIGI +F F QAD+ST+R YGGTG+GL+IS LV++M G+I S+
Sbjct: 483 VKDTGIGIKAENIPNIFQSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEICVESKFGE 542
Query: 668 GSTFSFTAVFGKCKE-----YVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
GSTF F K Y+FE + + +V+D+ + + +L
Sbjct: 543 GSTFKFNVKLKIAKRVAEPIYMFEKLDHA------------NILVIDDNANNREIVKLYL 590
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
G+ V + DA S ++++ + +I ++ D + G SG+ +L +
Sbjct: 591 QENGLKVYEAG---DAGSGITTIISNANTNNKINIAII--DYEMPGM-SGY--ELANALK 642
Query: 783 NGHVFKLPKLILLATNISKDECDK-AKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
N + K KLILL T+ +K EC K AK GF+ + + KP+R + C+ L + + +
Sbjct: 643 NIPIAKDVKLILL-TSYAKRECGKSAKEFGFS-SYLTKPIRRDDLIRCVAVALGLKQEEE 700
Query: 842 AGRGVPNGSSFHQGLLRGK-KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ S + + K +IL+V+DN VNR + LK + A AL K
Sbjct: 701 EEHEIEMESGIKEIQTQLKPRILLVEDNEVNRKIFISMLKSHNMDCDVALDGSEAL-KAV 759
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
S +D FMD QMP MDG+E+T +IRQ+E D+ H I+A+
Sbjct: 760 SEKDYDIVFMDCQMPVMDGYESTAKIRQLEG-------------------DKKHTKIIAV 800
Query: 961 TADVIHATFDECLKCGMDGYVSKPF 985
TA+ + +C+K GMD Y+SKP
Sbjct: 801 TANAMEGDSVKCIKAGMDDYISKPI 825
>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 842
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 142/482 (29%), Positives = 217/482 (45%), Gaps = 94/482 (19%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AE A+ AKS+FLA +SHEIRTPMNG+LGM ++L DT LS QR Y T G++L+
Sbjct: 443 KEAAEQANQAKSEFLARMSHEIRTPMNGVLGMASILADTPLSEKQRKYLDTIVSSGESLL 502
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL+L+ F L +L + +FS ++ +K IEL +SD +PE +
Sbjct: 503 NIINDILDFSKIEAGKLDLDNHPFKLSELLSYLTDIFSPRAHSKNIELICAISDGIPETL 562
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GD GR RQI+TNLVGN++KFT++G I + V +++ DA++ L + G+
Sbjct: 563 IGDSGRLRQILTNLVGNALKFTQQGSIQIIVEISDE-----DARNMKLKISVIDTGIGIP 617
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
Q ADG + + GG T
Sbjct: 618 LGKQQKIFESFSQADGSTT-----------------------RTYGG------------T 642
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G+ +S K LVELM G++ SRP GS+F
Sbjct: 643 GLGLSIS------------------------------KSLVELMGGELGVESRPGEGSSF 672
Query: 672 SFTAVFGK------CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
F+ K + + + PP G + ++V++ P+ LN +
Sbjct: 673 WFSVWLEKDPSISGISTLTAKTVGATGRSQSPP-LSG-RVLLVEDHPINQEYAVELLNMI 730
Query: 726 GIMVKMSSSIKDA-SSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
GI ++ + ++A + AKN DI+L+ DC + D A +
Sbjct: 731 GITADIAENGREALTRLAKN---------HYDIVLM--DCQMPVMDGYETAMAIRAAEQS 779
Query: 785 H--VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
H +LP + L A + D+ +G D + KP + A L + L R A
Sbjct: 780 HPGSRRLPIVALTANALPADQQRCMDSG--MDDFLAKPFSIQQLYASLARWLPPAKARIA 837
Query: 843 GR 844
R
Sbjct: 838 DR 839
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++L+V+D+ +N+ A L G T + A + + AL +L H +D MD QMP MDG+
Sbjct: 709 RVLLVEDHPINQEYAVELLNMIGITADIAENGREALTRLAKNH-YDIVLMDCQMPVMDGY 767
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
E IR A EQ G LPI+A+TA+ + A C+ GMD +
Sbjct: 768 ETAMAIR-----AAEQSHPGSR-----------RLPIVALTANALPADQQRCMDSGMDDF 811
Query: 981 VSKPFEEENLYRELAKFF 998
++KPF + LY LA++
Sbjct: 812 LAKPFSIQQLYASLARWL 829
>gi|410672176|ref|YP_006924547.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171304|gb|AFV25179.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1772
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 110/155 (70%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
RAE A AKS+FLA +SHEIRTPMNG++GM LLLDT+L+ QR Y +T Q G+AL+ +
Sbjct: 1121 RAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNEEQRHYVETVQASGEALLEI 1180
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA KLELE + F+L ++LDD S+ S ++ +KG+E VP ++ G
Sbjct: 1181 INDILDFSKIEAGKLELEVLDFDLHSLLDDFASMLSIRAHDKGLEFICAAEPAVPAYIRG 1240
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
D GR +Q++ NL GN+VKFT +G + V+V L T
Sbjct: 1241 DTGRLQQVLVNLTGNAVKFTHQGEVAVRVTLESET 1275
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 188/395 (47%), Gaps = 34/395 (8%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTGIGIP +F F Q D+ST+R YGGTG+GL+ISK LVE+M G+I S
Sbjct: 1281 LRFSVRDTGIGIPKDKIGSLFGQFYQVDASTTRQYGGTGLGLAISKQLVEMMGGEIGVRS 1340
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
GS F FTA F K + D K+ S D+ + + +VVD+ + L+
Sbjct: 1341 EEGKGSEFWFTAHFAKQPDC---DRKKIMSGDI----QSARILVVDDNATNREILINQLS 1393
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
G K + D + + ED + L+ D + G D A+++ +
Sbjct: 1394 SWGSRAKEAV---DGPMALQALYKAYEDNEPFQVALL--DMQMPGMDGATLARII---KS 1445
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
K LI+L++ + + + + + + KP+R S + L +LS E ++Q
Sbjct: 1446 DEKLKNTHLIMLSS-MGQWSASQQLEKSYFEAYLTKPVRQSSLLDKLSSILSMETEKQMS 1504
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
+ + + ++L+ +DN VN+ VA LKK G + A+ A+ L++
Sbjct: 1505 HSPLTMNLTSKRGINNVRVLLAEDNIVNQKVAQSMLKKLGFRADTVANGAEAVKALET-L 1563
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
+D MD+QMPEMDG EATR IRQ GS+V +PI+AMTA
Sbjct: 1564 PYDLVLMDVQMPEMDGMEATRLIRQ-----------PGSAVLNR------EIPIIAMTAH 1606
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ + ++ GMD Y+SKP ++L L K+
Sbjct: 1607 AMKGDRERFIEAGMDDYISKPVSLKSLIELLDKWL 1641
>gi|407940219|ref|YP_006855860.1| multi-sensor hybrid histidine kinase [Acidovorax sp. KKS102]
gi|407898013|gb|AFU47222.1| multi-sensor hybrid histidine kinase [Acidovorax sp. KKS102]
Length = 1624
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 187/400 (46%), Gaps = 67/400 (16%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIG+ R+F F QAD+ST+R YGGTG+GL+I K L ELM G++
Sbjct: 1014 VRLRFEVRDTGIGLTDEQMARLFQSFQQADTSTTRRYGGTGLGLAICKSLAELMGGEVGV 1073
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
SR GSTF + E ++ PP +G + +VVD+ A V
Sbjct: 1074 ESRFGKGSTFWVSV--------PLERGAPARVLLPPPDLRGTRVLVVDDNHTAATVLSDM 1125
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L +G +V+ + S +A + + QP F LLDW
Sbjct: 1126 LQAMGFVVEQAHSGLEALDRLRESMAHQ----QP-----------------FGLLLLDWH 1164
Query: 782 -PN-------GHVF-----KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
P GH+ K+P+++++ +D A+A G +TV++KP+ AS++
Sbjct: 1165 MPGMDGVELAGHIRSLGMPKVPQMLMVTAYGREDVMRAARAQGI-ETVLIKPVNASLLFD 1223
Query: 829 CLQQVL--STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
L Q L S +R+A P +RG +L+V+DN +N+MVA L G V
Sbjct: 1224 TLMQPLEASGSERRRAVTPAPAADELPLD-IRGASVLLVEDNALNQMVAMELLLDAGFAV 1282
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
+ A + + A+D ++ H +DA MD+QMP MDG ATR +R A
Sbjct: 1283 DVAENGQIAIDHIERKH-YDAVLMDMQMPVMDGETATRLLRGNPRYA------------- 1328
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
LPI+AMTA+ + A C GM+ +V+KP E
Sbjct: 1329 -------QLPIIAMTANAMEADRQRCFAAGMNDHVAKPIE 1361
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E + + +EL AE + KS FLA +SHEIRTPMN I+GM L L + LS Q DY
Sbjct: 845 RAEQELRRAKEL---AEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLSPRQHDY 901
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q G+ L+ +IN++LD +KIEA KL +E F L +L+ V + K+ KG+EL
Sbjct: 902 VSKIQQAGQHLLGVINDILDFSKIEAGKLVVERQPFLLDRMLESVSDVVGYKAGAKGLEL 961
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
V+ VP ++GD R QI+ N N++KFTE G I + V L E
Sbjct: 962 VCDVASDVPPNLVGDALRLGQILINYANNAIKFTESGEISIAVRLVE 1008
>gi|398872748|ref|ZP_10628030.1| PAS domain S-box [Pseudomonas sp. GM74]
gi|398201838|gb|EJM88704.1| PAS domain S-box [Pseudomonas sp. GM74]
Length = 1469
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 130/434 (29%), Positives = 207/434 (47%), Gaps = 43/434 (9%)
Query: 579 DAEGFQSNASIINMMASNGGS-EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F I+ + G + E L V DTGIG+ R+F PF QADS+T+R
Sbjct: 861 NATKFTEQGEIVLGVEQRGAAGEQAQLHFWVRDTGIGMNAEQCSRLFEPFSQADSTTTRK 920
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
YGGTG+GL+IS+ LVELM G+I S P +GSTF F G ++ + +++L
Sbjct: 921 YGGTGLGLAISRHLVELMGGRIWVESEPGLGSTFHFEVSLGVQRDS--HPRRMVTADEL- 977
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
G + +VVD+ A+ G+ V ++ S + A + L +E K P D
Sbjct: 978 ---LGSRVLVVDDNASARAILSSMARSFGVEVDVAQSGRVALAM----LVEAEAKVLPYD 1030
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDEC--DKAKAGGFAD 814
++L+ D + G D + + + + P +I++ T ++E + ++ G
Sbjct: 1031 LVLM--DWRMPGMD---GVETVRQMQAAKLAQTPSVIMV-TAFGREEAREEASRYGIQLP 1084
Query: 815 TVIMKPLRASMIAACLQQVLST--ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNR 872
V+ KP+ S + L VL E + G + +S LRG ++L+V+DN +NR
Sbjct: 1085 VVLTKPVTPSTLLEALGTVLGKIPEAHTRTGERLGQRASVMAS-LRGARLLLVEDNELNR 1143
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
+A L+ G + A ALD+L FD MD QMP MDG+ ATR+IR+
Sbjct: 1144 ELACELLESAGIELCLAVHGAQALDQLARDADFDGVLMDCQMPVMDGYTATRKIREQPRW 1203
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
LP++AMTAD + + L CGM+ +++KP ++++
Sbjct: 1204 TT--------------------LPVIAMTADAMAGDRERALACGMNDHITKPLNVDDMFA 1243
Query: 993 ELAKFFKSKPLSGA 1006
LAK+ + GA
Sbjct: 1244 TLAKWIHPRTDRGA 1257
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 100/156 (64%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q + AE A AKS FLAT+SHEIRTPMN I+GM L L T+L QR+Y +
Sbjct: 720 EVQRAREAAEEATRAKSNFLATMSHEIRTPMNAIIGMSYLALRTELDHRQRNYIEKVHRS 779
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+ L+ +IN++LD ++IEA K+ LE + F+L A+LD S+ K+ +KG+EL +
Sbjct: 780 AEYLLVIINDILDFSRIEAGKMHLEHIPFHLEAVLDGFASMIGLKAEDKGLELLFSTDAE 839
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P ++GDP R Q++ NL N+ KFTE+G I + V
Sbjct: 840 LPTALIGDPLRLGQVLINLGNNATKFTEQGEIVLGV 875
>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1009
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 117/161 (72%)
Query: 362 EDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ 421
ED K +E+ A+AA++AKS+FLA +SHEIRTP+NG++GM LLL+T+L+S QR YA+
Sbjct: 340 EDARLKAEEMARDAQAANLAKSEFLANMSHEIRTPLNGVIGMTGLLLETELNSQQRRYAE 399
Query: 422 TAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
T G++L++LIN++LD +KIEAR+LELE + F+L +DD + + ++ +G+EL
Sbjct: 400 TMLYSGESLLSLINDILDLSKIEARQLELEEIEFDLAGTIDDFAATMAVRAHERGLELIC 459
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
S + V GD GR RQ++ NLVGNS+KFTE+G + +KV
Sbjct: 460 LFSPGLSPLVKGDCGRLRQVLANLVGNSIKFTEKGEVAIKV 500
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 206/413 (49%), Gaps = 46/413 (11%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
I + + + E+V L + DTG+GIP +F F Q D+ST+R YGGTG+GL+I++
Sbjct: 498 IKVSSRDKDEENVLLSFEISDTGVGIPQEKLTTIFEKFSQVDASTTRKYGGTGLGLAITR 557
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LV+LM G+I+ SR GS FSFT +F K + ++ +D+P +VVD
Sbjct: 558 QLVDLMGGEITVSSREGSGSVFSFTVLFRKVAGEIPTTMEL---QDVP-------VLVVD 607
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+ V + +LN KM ++ + +TA L + P + D + G
Sbjct: 608 DNATNREVLESYLNSW----KMRPTMAEDGATALQKLQQAVAGDSP-FAMALLDMQMPGM 662
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
D A+ + K + + P LILL T++ + D+A+ + KPLR +
Sbjct: 663 DGMALARAI--KEDSALSATP-LILL-TSLGSGDGDQAERRHLFAACLNKPLRQRELRHV 718
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGL--LRGK--KILVVDDNGVNRMVAAGALKKFGAT 885
+ + S + +A + SF + L L GK +IL+V+DN +N+ VA + K G
Sbjct: 719 ISMISSGKAVEKAEK-----PSFGEMLVSLDGKQPRILLVEDNIINQQVAKAVMAKIGIN 773
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
+ AA+ + ALD L S +D MDIQMP MDG ATR+IR +VD
Sbjct: 774 IHVAANGQEALDALGS-IPYDLVVMDIQMPVMDGLTATRKIR---------------AVD 817
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
TA + +PI+AMTA V+ ECL GM+ Y++KP + L +L ++
Sbjct: 818 STALNPQ--IPIIAMTARVMKGDQAECLAAGMNDYLTKPLVPQALREKLLQWL 868
>gi|34496645|ref|NP_900860.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
12472]
gi|34330304|gb|AAQ58865.2| probable sensor/response regulator hybrid [Chromobacterium
violaceum ATCC 12472]
Length = 1105
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 180/403 (44%), Gaps = 76/403 (18%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L VEDTGIGIP Q +F PF QAD+ST+R +GGTG+GL+IS+ LV LM G+I
Sbjct: 544 VRLRFAVEDTGIGIPKPKQRELFRPFTQADASTTRRFGGTGLGLAISQRLVALMGGEIGL 603
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P GS F FT F + + I+ S P L ++ D+ P+
Sbjct: 604 YSEPGQGSAFWFTLRFPRE-----QGIRLSS-----PEMADLNVLIADDNPIARETLGVT 653
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
+ LG V+ S + + VEK + D + +LDWK
Sbjct: 654 ASELGWKVRSVESGR---------------------LAVEKVMAMLDGDQAVDVVVLDWK 692
Query: 782 -PNGHVF-------------KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
P+ ++P +IL+AT S++ A V+ KP+ S +
Sbjct: 693 MPDMDGLAAAQAIRQACRGKRMP-IILMATAYSREVLQAEPAAELVTEVLNKPVTPSGLY 751
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
+ + L + P H L+G ++LVVDD+ +NR VA + GA+V
Sbjct: 752 NAVARALRPQT-------APPPQIQHGNRLQGLRLLVVDDSDINREVAQRIFEDEGASVA 804
Query: 888 CAASAKAALDKLQSPHC--FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
A K ALD L H D MD+QMP MDG+EATR IR + A
Sbjct: 805 LANDGKEALDWL-GLHGGEVDIVLMDVQMPVMDGYEATRAIRATPALA------------ 851
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE 988
HLP++A+TA A D + GM Y++KPF+ E
Sbjct: 852 --------HLPVVALTAGAFLAQQDAAREAGMSDYIAKPFDVE 886
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 96/156 (61%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++E K AEAA AK+ FL+ +SHEIRTPMN +LG+ LL L + D ++ G
Sbjct: 380 LRESKENAEAASRAKANFLSNMSHEIRTPMNAVLGLAYLLEKHGLPAEALDLVHKIRVAG 439
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
++L A+IN++LD +KIEA LE+E F L +LD++ ++ S N+ IEL + +
Sbjct: 440 RSLQAIINDILDFSKIEAGNLEIEQASFRLADVLDNLSTIMSASVGNRDIELIIAPPPQD 499
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
+++ GD R Q++ NL N++KFTE GH+ V +
Sbjct: 500 IDYLRGDALRLEQVLINLTSNAIKFTEHGHVKVSIQ 535
>gi|395007235|ref|ZP_10391000.1| PAS domain S-box [Acidovorax sp. CF316]
gi|394314783|gb|EJE51647.1| PAS domain S-box [Acidovorax sp. CF316]
Length = 1622
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 195/417 (46%), Gaps = 69/417 (16%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V+L V DTGIG+ R+F F QAD+ST+R YGGTG+GL+I K L ELM G++
Sbjct: 1025 VSLRFEVRDTGIGLTAEQMGRLFESFQQADTSTTRRYGGTGLGLAICKSLAELMGGEVGV 1084
Query: 662 VSRPQVGSTF--SFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+S GSTF S G V PP G + +VVD+ A V
Sbjct: 1085 ISEFGNGSTFWVSLPLERGAPARVVLP----------PPDLVGRRVLVVDDNHTAATVLS 1134
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L +G V+ + S A + + ++++F F LLD
Sbjct: 1135 DMLQAMGFEVEQAYSGLQALEILREAM--AKNRF-------------------FGLLLLD 1173
Query: 780 WK-PN-------GHVFKL-----PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
W P GH+ L P+++++ +D A+A G +TV++KP+ AS++
Sbjct: 1174 WHMPGMDGVELAGHIRSLGMPQVPQMLMVTAYGREDVMRAARAQGI-ETVLIKPVNASLL 1232
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGL-LRGKKILVVDDNGVNRMVAAGALKKFGAT 885
L Q L + VP + L +RG ++L+V+DN +N+MVA L+ G
Sbjct: 1233 LETLMQPLEHALPALQRQYVPPPVADELPLAIRGARVLLVEDNELNQMVAVELLRDAGFD 1292
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V+ A + + A+ +L + +D MD+QMP MDG ATR +R A
Sbjct: 1293 VDVAGNGQVAIQRLHEDN-YDLVLMDMQMPVMDGETATRHLRADPRFA------------ 1339
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
LPI+AMTA+ + A C GM+ +V+KP + L++ LA++ + +P
Sbjct: 1340 --------RLPIVAMTANAMDADRQRCFDAGMNDHVAKPIDPAALWKALARWIQPRP 1388
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E+D + +EL AE + KS FLA +SHEIRTPMN I+GM L L + L++ Q DY
Sbjct: 856 RAEEDLRRAKEL---AEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLNTRQHDY 912
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q G+ L+ +IN++LD +KIEA KL +E F L +L+ V + K+ KG+EL
Sbjct: 913 VSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKQPFVLDRMLESVTDVVGYKAGAKGLEL 972
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
V+ VP +LGD R QI+ N N++KFT++G I + V L E +
Sbjct: 973 VCDVAANVPPNLLGDSLRLGQILINFANNAIKFTDQGEISIAVRLLEES 1021
>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
Length = 2035
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 202/416 (48%), Gaps = 69/416 (16%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++ V L+ V DTGIGI + Q ++F F QAD ST+R +GG+G+GL+I K LVE+M+G+
Sbjct: 1459 AKQVHLLFEVHDTGIGIDEAQQAKLFEAFSQADLSTTREFGGSGLGLAICKHLVEMMQGK 1518
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S GSTFSF+A F +E + Q ED+ + L+ ++VD+ +
Sbjct: 1519 IWVKSTLGEGSTFSFSAQFELQEE---QKKPQFNDEDV----RNLRILIVDDNASAREIL 1571
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ L V S+ D A + L ++ + QP +N L+
Sbjct: 1572 ENILRSFHFNV---HSVCDGHH-ALSLLKEAQKEPQP-----------------YNLVLI 1610
Query: 779 DW---KPNG----------HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
DW + NG V P + ++ T SK+E K F D +++KP+ S
Sbjct: 1611 DWMMPQLNGIETIRKIREEIVSDQPLMFIMITAYSKEELQKELEELFVDGILIKPISPST 1670
Query: 826 IAACLQQVLSTEN---KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
+ + VL E R+ + S H LRG K+L+V+DN +N+ +A L++
Sbjct: 1671 LLNTILNVLGKEVMRLSRKEDKQALYRESIHA--LRGAKVLLVEDNIINQEIAKEILERE 1728
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G + A K AL+ ++ FD MD QMP MDGFEATR +R+ GG
Sbjct: 1729 GMDIVVANHGKEALEWIEK-ESFDGVLMDCQMPVMDGFEATRLMRE-----------GGH 1776
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ LPILAMTA+ + + CL CGM+ ++SKP + L+ +AK+
Sbjct: 1777 T-----------LPILAMTANAMEGDKERCLACGMNDHISKPIDMAKLFITMAKWI 1821
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+Q K AE A KS FLA +SHEIRTPMN I+GM L L T+LS+ QR+Y
Sbjct: 1298 IQRAKSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAHLALQTELSNQQRNYLVKIDSAS 1357
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
K L+ +IN++LD +KIEA K+ E++ F L +++ + L K++ KG+EL + +
Sbjct: 1358 KHLLGIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDIETNI 1417
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHI--FVKV 522
P + GDP R QI+ NLV N++KFT +G I FVK+
Sbjct: 1418 PTALRGDPLRLGQILINLVNNAIKFTAQGEIRLFVKL 1454
>gi|407790135|ref|ZP_11137231.1| sensory box histidine kinase/response regulator [Gallaecimonas
xiamenensis 3-C-1]
gi|407205150|gb|EKE75126.1| sensory box histidine kinase/response regulator [Gallaecimonas
xiamenensis 3-C-1]
Length = 1260
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 188/396 (47%), Gaps = 46/396 (11%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTGIG+ ++F F QADSST+R +GGTG+GL+I + L LM G I S
Sbjct: 712 LQFSVRDTGIGMTGEQVGKLFQAFSQADSSTTRRFGGTGLGLAICQRLCLLMGGDIEVRS 771
Query: 664 RPQVGSTFSFT-AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
GS F+F+ + + +E + + +G +A+VVD+ + V + +
Sbjct: 772 ELGRGSLFTFSLPLVAEGEEGSYRQVA---------ALQGCQALVVDDNETQLTVLEGLM 822
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
+ G V+ + + A + + P++++V D + G D AQ + P
Sbjct: 823 SAYGFSVRSALGGEQALEMCRQAM--------PELLVV--DWQMPGMDGLALAQAVQQLP 872
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+ PK +L+ + S D+ K V++KP+ S + + + L + R
Sbjct: 873 -----EQPKALLMVSAFSNDKLVKEALALGIREVLLKPVSPSTLLDAVCEALGASSGRLP 927
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
R P+G L GKK+L+VDDN +NR VA L K G V A + ALDKL
Sbjct: 928 VRRAPDGQGLRYPALAGKKVLLVDDNDLNREVAQSFLVKAGVQVLLAKDGQDALDKLAG- 986
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
D MD QMP MDGFEATRR+RQ + LP++AMTA
Sbjct: 987 RGADLVLMDCQMPIMDGFEATRRLRQQPQWQD--------------------LPVIAMTA 1026
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+V+ + CL GM+ +++KP + ++ +A++
Sbjct: 1027 NVMEGDKERCLAAGMNDHIAKPLDVPLMFEVIARWL 1062
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 3/180 (1%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+QE K A+ A AKS FLA +SHEIRTPMN ILG L + D +S Y Q
Sbjct: 553 VQEAKEAADEASRAKSDFLANMSHEIRTPMNAILGFTQLAQEQDGASP---YLGKIQQAS 609
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
K L+ ++N++LD +KIEA KL +E V F+L L ++ +F++K+ K +EL +
Sbjct: 610 KTLLRILNDILDFSKIEAGKLSIEKVDFHLEDTLTNLRDIFADKAVEKQVELVFNLLPDC 669
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
P + GDP R QI+ NL+ N++KFTE+G + V V + ++ +D + G + G
Sbjct: 670 PSRLHGDPHRLSQILMNLISNALKFTEKGEVVVSVQQHQPGWLQFSVRDTGIGMTGEQVG 729
>gi|398985649|ref|ZP_10691146.1| PAS domain S-box [Pseudomonas sp. GM24]
gi|399014510|ref|ZP_10716800.1| PAS domain S-box [Pseudomonas sp. GM16]
gi|398110776|gb|EJM00672.1| PAS domain S-box [Pseudomonas sp. GM16]
gi|398153806|gb|EJM42299.1| PAS domain S-box [Pseudomonas sp. GM24]
Length = 1459
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 196/420 (46%), Gaps = 66/420 (15%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+E V L V DTGIG+ + R+F F QADSS +R YGGTG+GLSISK LVELM G+
Sbjct: 884 NEHVQLHFWVRDTGIGMTVEQCSRLFQSFSQADSSITRKYGGTGLGLSISKKLVELMAGR 943
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S+P VGSTF F + + + K+ +L G++ +VVD+ +
Sbjct: 944 IWVESQPGVGSTFHFQVQL--AVQQGVQPRRMFKAGEL----LGMRVLVVDDNASAREIL 997
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
G+ V ++ S A L +E K P +N L+
Sbjct: 998 SGMARSFGLEVDVAQS----GDLALRMLADAEHKALP-----------------YNLVLM 1036
Query: 779 DWKPNG-------------HVFKLPKLILL-ATNISKDECDKAKAGGFADTVIMKPLRAS 824
DW+ G + + P +I++ A + + + G V+ KP+ S
Sbjct: 1037 DWRMPGMDGMEAVSKMHSASLMRTPSVIMITAFGREEAREEAERQGIQLPVVLTKPVTPS 1096
Query: 825 MIAACLQQVLSTENK---RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
+ + VL E + R R + N ++ L G ++L+V+DN +N+ +A+ L+
Sbjct: 1097 SLLEAIGVVLGREPQGETRTGERSLHNANTVAS--LNGARLLLVEDNDLNQELASELLES 1154
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
G + A + ALD L FD MD QMP MDG+ ATR+IRQ + + N
Sbjct: 1155 VGIRLRLATHGQEALDILAEDGDFDGVLMDCQMPVMDGYTATRQIRQ-QPRFNT------ 1207
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LP++AMTA+ + + L+CGM+ ++SKP E ++ LAK+ K +
Sbjct: 1208 -------------LPVIAMTANAMDGDRERALECGMNDHISKPLNVETMFATLAKWIKPR 1254
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 88/141 (62%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLA +SHEIRTPMN I+GM L L T L + QR+Y + + L+ +IN++LD +
Sbjct: 737 KSEFLANMSHEIRTPMNAIIGMSHLALRTHLDNRQRNYIEKVHRSAENLLGIINDILDFS 796
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA ++ LE F L +LD ++ K+ +KG+EL + +P ++GDP R Q+
Sbjct: 797 KIEAGRMSLEQAPFRLEDVLDSFAAMIGLKTEDKGLELLFQIPPDLPTALIGDPLRLGQV 856
Query: 502 ITNLVGNSVKFTERGHIFVKV 522
+ NL N+ KFTE G I V V
Sbjct: 857 LINLGNNAAKFTEHGDIVVGV 877
>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
Length = 1761
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 204/404 (50%), Gaps = 55/404 (13%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+D+ L V D GIG+ +ER+F F QAD+ST+R YGGTG+GL+ISK LVELM G+I
Sbjct: 1185 DDIVLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEI 1244
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+ GS+F F+ + + ++ +G++ +V D+ + +
Sbjct: 1245 GVESQFGNGSSFYFSVKLKVANNQLLKVKRE---------IEGMRILVADDNATARDIMR 1295
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QL 777
L +G V DA + + + P + L++ W+ E +G A ++
Sbjct: 1296 TTLESMGFKV-------DAVKSGAEAIEHCQHTDYP-VALID---WLMPEMNGIEAAQKI 1344
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
L K + PK+++++ + + + ++ + A + I KP+ AS + L ++S+
Sbjct: 1345 LSGKEHP-----PKILIVSAHANAEFIEQVEHSDIA-SYITKPISASRL---LDGIMSSL 1395
Query: 838 NKRQAGRGVPNGSSFHQGL---LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ A GS Q L L+GK++L+V+DN +N+ VA L++ G + A + +
Sbjct: 1396 GQNGAMVVRRKGSDISQELLLQLQGKRVLLVEDNDMNQEVATEFLEQVGVVLSIAENGQV 1455
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
AL+KL + FD MD QMP MDG++ATR +R+M G K
Sbjct: 1456 ALEKL-ATQSFDLVLMDCQMPVMDGYQATRELRKMP---------------GLEK----- 1494
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP++AMTA+ + + CL+ GM+ +++KP E LY L ++
Sbjct: 1495 LPVIAMTANAMAGDKEMCLRVGMNDHIAKPIEVARLYSTLLQYL 1538
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
Query: 324 HQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKS 383
+Q W +T G L +L A +I ++ ++++ K A+AA+ AKS
Sbjct: 981 NQSGECIWMDITLTKLQDPQGKLTSVVLSMA--NITSLKQLSEELKQAKDSADAANQAKS 1038
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443
FLA +SHEIRTPMN I+GM L L T+L+ Q++Y K+L+ +IN++LD +KI
Sbjct: 1039 DFLANMSHEIRTPMNAIIGMSQLCLQTELNRKQQNYVLKIDRASKSLLGIINDILDFSKI 1098
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
EA KL++E+V F L +L+D+ +FS K+ +K +EL V+ +P + GDP R Q++
Sbjct: 1099 EAGKLDIESVPFQLDTLLEDLSDMFSVKATDKRLELLFAVAPNIPRQLQGDPLRLSQVLI 1158
Query: 504 NLVGNSVKFTERGHIFVKVHLAER 527
NL+ N++KFTE+G + + + ER
Sbjct: 1159 NLMSNAIKFTEQGEVLLSISQLER 1182
>gi|344940937|ref|ZP_08780225.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262129|gb|EGW22400.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 966
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 205/407 (50%), Gaps = 43/407 (10%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++ + L V+DTGIG+ +F F QAD ST+R YGGTG+GL+I K +V++M G
Sbjct: 455 ADQIRLEFSVKDTGIGLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGV 514
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I+ S GSTF FTA+F + E K S S D F+G+KA+VVD
Sbjct: 515 ITVNSEIGQGSTFIFTAIFEQPYEV---SQKYSASHD---AFRGVKALVVDSDETSRNAL 568
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
HL L V S+ + A +N +ED ++ LV D + D A+ +
Sbjct: 569 CLHLKSLFFQVTSVSTGEQAIQLLENA--CAEDPYR----LVLMDWNLPKMDGISVARHI 622
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGF-ADTVIMKPLRASMIAACLQQVLSTE 837
K + + +P +I++ T+ +D ++ D + KP+ AS + + + + +
Sbjct: 623 --KNSLEIACIPHIIIVTTHSREDVVHVQRSKDLNLDGFLAKPVHASALFSAVVEAFNQT 680
Query: 838 N-----KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ Q R HQ ++G K+L+V+DN +N+ +A L++ G V A+
Sbjct: 681 DFDEYPPSQVRRPGTGNEKLHQ--IKGAKLLLVEDNHINQQIAKETLEQEGFEVSIASDG 738
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A+ K+++ + FDA MD++MP MDG+EATR IR E++ ++
Sbjct: 739 RDAVQKIRTCY-FDAVLMDLEMPIMDGYEATRIIRS-EAQFSD----------------- 779
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LPI+AMTA ++ ++CL GM+GYV+KP + + L L K
Sbjct: 780 --LPIIAMTAHAMNDVREKCLHIGMNGYVTKPIDVDELLANLIDLIK 824
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 128/198 (64%), Gaps = 5/198 (2%)
Query: 333 ALTTAFFLFVIGLLVGYIL---YGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATV 389
ALTTAF L + Y Y + KV + ++ E + +A AAD +KS+FL+ +
Sbjct: 251 ALTTAFSQMARNLKISYDKLEEYSRTLE-QKVINRTSELAEARDQAIAADKSKSEFLSMM 309
Query: 390 SHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449
SHEIRTPMN I+GM L L TDL++ Q+DY QI +AL+ +IN++LD +KIEA KLE
Sbjct: 310 SHEIRTPMNAIIGMTRLALQTDLTAKQQDYLTKVQISSRALLGIINDILDFSKIEAGKLE 369
Query: 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNS 509
LE + FNL +L+D+ SL S K+ KG+++ +D VP ++GDP R Q++ NLV N+
Sbjct: 370 LETIAFNLDDVLNDLFSLMSGKAEEKGLKIRFITADDVPSDLIGDPLRLGQVLLNLVNNA 429
Query: 510 VKFTER-GHIFVKVHLAE 526
VKFT R G + +KV LAE
Sbjct: 430 VKFTSRGGDVDIKVALAE 447
>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
Length = 861
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 116/170 (68%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G I I V+D +++E ++RAE A AKS FLA +SHEIRTPMNG++GM LL ++ L
Sbjct: 304 GLRIDITDVKDTQRELEEARIRAETASRAKSSFLANMSHEIRTPMNGVVGMAELLRESPL 363
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
+ QR Y T + G+AL+ +IN++LD +KIEA KL+L A F+L + +VL L +
Sbjct: 364 TDEQRLYVDTIRGSGEALLVIINDILDYSKIEADKLKLSAESFDLERAVHEVLLLLQPTA 423
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
R KG+E+ +P+ V+GDPGR RQI+TNLVGN+VKFT GH+ V+V
Sbjct: 424 REKGLEMLAEYDMFLPQRVVGDPGRVRQILTNLVGNAVKFTNEGHVLVRV 473
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 113/425 (26%), Positives = 184/425 (43%), Gaps = 77/425 (18%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G+ DV + VEDTG+G+P E +F F QA+ +R + GTG+GL+I+K LVE+M G
Sbjct: 481 GALDVR--ITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPFEGTGLGLAITKRLVEMMEG 538
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I S P GS F + LP G + + +VV++ + +A+
Sbjct: 539 EIWVKSEPGQGSCFGLRIPLAVAAP------SEEGCATLPEGLETV--LVVEDHALNSAI 590
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW-ISGEDSGFNAQ 776
L LG++V TA+ L + PD+++ E+ +SG + Q
Sbjct: 591 LARQLETLGLVVA-------TCKTAEEALDRMAEP--PDLVIAEQGLPDMSGLE--LTRQ 639
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC------- 829
L +P LP +ILL + +AG A V+ KP + S + A
Sbjct: 640 LALMQPG-----LP-VILLTPEPAGLAVAGREAG--ARAVLQKPAQRSALLAALETALEP 691
Query: 830 --------LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKK----ILVVDDNGVNRMVAAG 877
+Q+ + R P + + R +L+ +DN N++V
Sbjct: 692 PQSGAGPEVQRPVPAFRHRPVTGASPRPHPAERPVARPAPRPLDVLLAEDNRTNQLVFRK 751
Query: 878 ALKKFGATVECAASAKAALDKLQSPHCF-----DACFMDIQMPEMDGFEATRRIRQMESK 932
++K G + + A + +++ + D FMDI MP MDG EATR IR +E+
Sbjct: 752 MVQKLGQPLRL----RFADNGIEAVRAYREQRPDLIFMDISMPHMDGREATREIRALEA- 806
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
GG V PI+A+TA + + ++ G+D Y++KP + L
Sbjct: 807 -------GGPRV-----------PIIAVTAHAMTGDREGVIEAGLDDYLTKPLRKAELAA 848
Query: 993 ELAKF 997
L K+
Sbjct: 849 LLDKW 853
>gi|384920925|ref|ZP_10020922.1| histidine kinase [Citreicella sp. 357]
gi|384465264|gb|EIE49812.1| histidine kinase [Citreicella sp. 357]
Length = 902
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 116/170 (68%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + I ++ +++ K+RAEAA AKS FLA +SHEIRTPMNG++GM LL D+DL
Sbjct: 304 GLRVDITDIKRTQQELEVAKLRAEAASRAKSAFLANMSHEIRTPMNGVVGMADLLRDSDL 363
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
S Q+ Y T + G+AL+ +IN++LD +KIEA KL L+ LF+L + D++ L +
Sbjct: 364 SDEQKLYVDTIRSSGEALLVIINDILDYSKIEAEKLTLKPELFDLERTVHDIVLLLQPAA 423
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
R KG+EL V +P V+GDPGR RQI+TNL+GN+VKFT GH+ V++
Sbjct: 424 REKGVELLVDYDMFLPTSVMGDPGRIRQILTNLIGNAVKFTADGHVMVRL 473
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 189/446 (42%), Gaps = 95/446 (21%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S+ + + VEDTGIGI + VF F QAD +R + GTG+GL+I+K LVE+M G+
Sbjct: 480 SDRACIHITVEDTGIGIAADKIDHVFGEFNQADDDCNRQFEGTGLGLAITKRLVEMMGGE 539
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV-VVDEKPVRAAV 717
+ S +GS F D+ + S D P +GL+ V ++D+ + A+
Sbjct: 540 VWAQSDLGLGSCFGLKIPL---------DVAEDTSADPVPMPEGLRTVLLIDDHAMTRAI 590
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQ 776
L LG+ V A T ++ L + PD+++ E+D E SG + A+
Sbjct: 591 LSAQLEGLGLRVT-------ACQTGEDALDKMSEP--PDLVISEQDL---PELSGLDLAR 638
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
L W V LP LILL+ + D AG A V+ KP++ + + L + ++
Sbjct: 639 QLGWL----VPDLP-LILLSADPQAISDDARPAGVHA--VLPKPVQRRRLISALASLYAS 691
Query: 837 ENKRQAGRGVPNGSSFHQG----------------------------------------- 855
A G P G H G
Sbjct: 692 SVPVPASGGDP-GVDSHTGPGVAPDAESGTDAPLAFPAFRHRDMTSGFASVRSAPPSAPE 750
Query: 856 --LLRGKKILVVDDNGVNRMVAAGALKKFGATVEC--AASAKAALDKLQSPHCFDACFMD 911
R IL+ +DN N++V ++K V+ AA+ AL+ + D FMD
Sbjct: 751 TTPARPLDILLAEDNRTNQLVFRKMIQKLDVLVKLRFAANGIEALEAYKERRP-DIVFMD 809
Query: 912 IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971
I MP+MDG AT IR++ES GG V PI+A+TA + D
Sbjct: 810 ISMPKMDGKAATHEIRKIESA-------GGPCV-----------PIIAVTAHAMAGDRDG 851
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKF 997
L+ G+D Y++KP L + K+
Sbjct: 852 ILEAGLDDYLTKPLRRTELAHLVDKW 877
>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
Length = 837
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 132/206 (64%), Gaps = 12/206 (5%)
Query: 349 YILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLL 408
++L A H++ + D +Q K A+AA+ AK QFLA +SHEIRTPMNGI+GM LLL
Sbjct: 143 HMLIQAQSHLLAIAKDV--IQSQKESADAANRAKGQFLANMSHEIRTPMNGIIGMTELLL 200
Query: 409 DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLF 468
+T+L+ Q +Y Q + L+++IN++LD +KIEA KLE+E++ F LR L D++
Sbjct: 201 ETELAPQQHEYLQMIKTSADCLVSVINDILDFSKIEAGKLEIESIPFQLRENLGDLMKTL 260
Query: 469 SEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+ ++ KG+EL V VP + GDPGR RQI+ NLVGN++KFTE G I V+V + E
Sbjct: 261 AFRAHGKGLELVAHVRPDVPWRMTGDPGRLRQILVNLVGNAIKFTEHGEIVVRVDIDE-- 318
Query: 529 MVKTDAKDETLLNGGTEEGVCRSGTG 554
+ +TDA LL+ VC +G G
Sbjct: 319 ISETDA----LLHF----TVCDTGIG 336
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 190/411 (46%), Gaps = 55/411 (13%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D L V DTGIGIP +A +++F F QAD +T+R +GGTG+GLSI LVELM G+I
Sbjct: 323 DALLHFTVCDTGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGLSICSRLVELMHGKIW 382
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQ 719
S+ VGS F FTA G D +PP + L ++VD+ +
Sbjct: 383 VESQVHVGSQFHFTAQLGI-------DANSYDERHIPPDDCRQLNVLIVDDNDTCGEIIA 435
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L G+ + +A S +TS KFQ II D + + + +
Sbjct: 436 EMLANWGMQPTVIGGAVEAISLYAEEVTSP--KFQLLII----DQQMPVLEGTELLERIQ 489
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV------ 833
P G K ++L K+ + +A D ++ KP++ S + L V
Sbjct: 490 KSPRGAAAK--SILLTTGTFDKEPTNPLQAR--VDAILSKPIKQSDLFDTLMNVMGHGVA 545
Query: 834 --LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L+T+N AG GS G++IL+ +DN VN+ +A L+K G V A+
Sbjct: 546 GDLATQN---AGAEPKLGS-------WGRRILLAEDNLVNQKLAVLLLEKRGHLVTVASD 595
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
K A++ + FD MD+QMP +DG AT IR+ E+ R
Sbjct: 596 GKQAVEAWKE-GGFDLVLMDVQMPILDGMAATTEIRRHET------------------RT 636
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
L +PI+AMTA + + CL+ GMDGYV+KP + LY + + S P
Sbjct: 637 ALRIPIIAMTAHAMKGDRERCLEAGMDGYVTKPINAQALYDAIDEALLSFP 687
>gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii
CIP 102972]
gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii
CIP 102972]
Length = 1268
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 195/414 (47%), Gaps = 73/414 (17%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+++ + + L + V DTGIG+ Q VF F QA+SS SR YGGTG+GLSI K
Sbjct: 671 VSIQTESHNGDRCVLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVK 730
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LV LM G + S VGS FSFT G C V E+ + S +LP GL+ ++V+
Sbjct: 731 HLVGLMEGSVQVKSEQGVGSEFSFTVNLG-C---VDEERQPEPSAELP---NGLQVLIVE 783
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+ + L RLG V +++ DA A + + ++ QP
Sbjct: 784 DNNTARLIFDDLLQRLGCHV---TAVADAEH-ALDTIEQADANGQP-------------- 825
Query: 770 DSGFNAQLLDWKPNG-----------HVFKLPK--LILLATNISKDECDK--AKAGGFAD 814
F+ +DWK G H L K L+++AT ++ D+ + D
Sbjct: 826 ---FDLLFIDWKLPGMDGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEETQSLLD 882
Query: 815 TVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMV 874
+++KP+ M+ L V+ N R R G L G K+L+V+DN NR+V
Sbjct: 883 ALLVKPVTPDMVKNTLLDVV---NNRNQPRDEQLGYRAQSQALLGLKLLLVEDNPTNRLV 939
Query: 875 AAGALKKFGATV---ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931
A L + GAT+ E A AALD+ + F MD+QMP+MDG+E TRRIRQM
Sbjct: 940 ATELLSQQGATIVEAESGVEALAALDQQE----FSLVLMDVQMPDMDGYETTRRIRQMAH 995
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
A+ LPILAMTA+ + CL GM+ +++KPF
Sbjct: 996 FAD--------------------LPILAMTANAMPEDKVACLNAGMNDHIAKPF 1029
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Query: 347 VGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406
VGY+ G A + + ++ E K AE A+ AKS FLA +SHE+RTPMN ILG+L +
Sbjct: 500 VGYL--GIAYDLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQI 557
Query: 407 LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLS 466
+TDL+ QRDY Q ++L+ L+N++LD +K+EA K+E+E F+L ++ +
Sbjct: 558 AQNTDLNKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGI 617
Query: 467 LFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV---- 522
L S ++K +E+ + + VP +++GD R RQI+ NL GN++KFTE G + V +
Sbjct: 618 LLSSNLQHKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSIQTES 677
Query: 523 HLAERTMVKTDAKDETLLNGGTEE 546
H +R +++ D + G TEE
Sbjct: 678 HNGDRCVLRITVSDTGI--GMTEE 699
>gi|404492663|ref|YP_006716769.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
gi|77544744|gb|ABA88306.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
Length = 1014
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 122/172 (70%), Gaps = 3/172 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+++ ++Q+ + AE A AKSQFL +SHEIRTPMNG++GM LLLD+ L+ QR
Sbjct: 337 QLQSSIQELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLAEEQRQI 396
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A T G+AL+ +IN++LD +K+EA KL+LE + F++ I+++ LF+ K++ KG+EL
Sbjct: 397 ADTVAESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLEL 456
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV---HLAERT 528
V ++D VP +LGDPGR RQ++ NL+ N++KFT++G++ V + H+ E++
Sbjct: 457 VVDMADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTLRAHHITEQS 508
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 190/427 (44%), Gaps = 67/427 (15%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++ + A + + T++V + D+GIGI ++F PF QAD ST+R YGGTG+GLSI
Sbjct: 496 LVTLRAHHITEQSATIVVSIRDSGIGIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSIC 555
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGK---CKEYVFEDIKQSKSEDLPPGFKGLKA 705
+ L+ M GQI S+P GS F F K C + I P K ++A
Sbjct: 556 QDLIGHMGGQIHVFSQPGQGSNFWFEMTMTKDPACGMHHVACI---------PELKNMQA 606
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
++VD P+ Q L GI K + K A + + FQ IILV
Sbjct: 607 LIVDPHPLTRRSVQQQLREWGIKAKTADHGKKALAMLQ------AQNFQ--IILV----- 653
Query: 766 ISGEDSGFNAQLLDWKPNGHVFK--------LPKLILLA--TNISKDECDKAKAGGFADT 815
A L P + + +PK I+ T C + A +
Sbjct: 654 ---------ALTLPDMPGRELIQHCCDVAQTVPKHIITLGLTGQKLPPCRISDATTV--S 702
Query: 816 VIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVA 875
+ KP+R S + L E+ Q+ PN +S + + +L+V+DN VN+ VA
Sbjct: 703 YLTKPIRPSKLLLHLTNAPPLEDNVQSQTPCPNPASETSTPTKAR-VLLVEDNPVNQQVA 761
Query: 876 AGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
G L+K G V AA + AL SP FD FMD QMP MDG+EATR IR E + +
Sbjct: 762 KGMLEKLGCNVTLAADGQEALTAYSHSP--FDLLFMDCQMPNMDGYEATRAIRADEKQHH 819
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
+ PI+AMTA + + CLK GMD Y+ KPF + L
Sbjct: 820 KTT-----------------CPIIAMTAHTLPGDRERCLKAGMDDYLGKPFTMRQVRTLL 862
Query: 995 AKFFKSK 1001
++ ++
Sbjct: 863 NRWLSAR 869
>gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1211
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 201/410 (49%), Gaps = 46/410 (11%)
Query: 584 QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643
Q I+ ++ ++ + L V V DTGIG+ ER+F PF QAD +T+R +GGTG+
Sbjct: 548 QQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGL 607
Query: 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKG 702
GLSI+ LV+L+ G+I S P GSTFSFT + G+ + + LPP +G
Sbjct: 608 GLSIAGRLVKLLGGEIRVESTPGAGSTFSFTCLLGRHEPH-------KALCPLPPVDLRG 660
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762
L+ +VVD+ V + L V+ + S + A S ++ED ++++++
Sbjct: 661 LRVLVVDDNATARQVLRQTLASFSFRVEEADSGRRALSLLAR---AAEDGRPYELVILD- 716
Query: 763 DCWISGEDSGFN-AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPL 821
W+ E G A + P + + L++L T ++E + AG + KP+
Sbjct: 717 --WVMPEFDGLECAAAIAADP---LIEPQPLLILLTAHGREEIREEAAGRGLRHFLTKPV 771
Query: 822 RAS----MIAACL-QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAA 876
S I C Q+ +S E+ R GR + L G ++LV +DN +N+ VAA
Sbjct: 772 LPSTLYDTIMECFGQEGISRESDR--GRRSDELELTAREKLAGSRLLVAEDNALNQQVAA 829
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
L G + A + + A+++ + +D MDIQMPEMDG++AT IR + A +Q
Sbjct: 830 ELLAAVGIHCDLANNGREAVEQYRR-QTYDGVLMDIQMPEMDGYQATGAIRAL--PAGQQ 886
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
+ PI+AMTA + ++CL GMD ++ KP E
Sbjct: 887 V------------------PIIAMTAHALAGEREKCLAAGMDEHIPKPVE 918
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA--LIALINEVL 438
+KS+FLA +SHEIRTPMN I+G+ L L + R + +I G A L+ LIN++L
Sbjct: 413 SKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLHDYLEKITGSAATLLTLINDIL 472
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +KIEA KL ++ V F+L IL+ + L + ++ KG+EL V P ++GDP R
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAERT 528
Q++ NL N++KFT++G + + +A+ T
Sbjct: 533 GQVLINLTSNAIKFTQQGEVTISFEVADPT 562
>gi|452966995|gb|EME72002.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 1523
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 198/417 (47%), Gaps = 74/417 (17%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V L V DTGIG+ + R+F F QADSST+R YGGTG+GL+ISK L ELM G +
Sbjct: 1026 EVVLRFEVRDTGIGLSEEQRGRLFQSFQQADSSTTRKYGGTGLGLAISKKLAELMGGGVG 1085
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQ 719
S P GSTF FTA GK K + + LP P +G + +VVD+ AV
Sbjct: 1086 VESEPGQGSTFWFTATLGKGK---------PRRKLLPRPDLRGRRMLVVDDNENARAVL- 1135
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ ++ MS + D S A + VE G D + LD
Sbjct: 1136 -----VDMLAAMSFKVDDVESGA---------------LAVEAVRRTMGGDDAYQIVFLD 1175
Query: 780 WKPNGH-------------VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
W+ G + + P +I++ + ++ A+ G + V++KP+ S++
Sbjct: 1176 WQMPGMDGIETAYAIKGLGLTRTPHMIMVTAHGREEVMAGAEHAGI-EEVLIKPVNPSLL 1234
Query: 827 --AA--CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
AA L V E AG V N + LRG ++L+V+DN N+ VA+ L
Sbjct: 1235 FDAAMRSLGAVPEDEPDDSAGAAV-NEADLSG--LRGLRVLLVEDNDFNQQVASELLADG 1291
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G VE A + A++ + + +D MD+QMP MDG ATR IR++
Sbjct: 1292 GVVVELAENGAVAVEMVGAA-PYDMVLMDMQMPVMDGVTATREIRRLGFG---------- 1340
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LPI+AMTA+ + A ++CL+ GM+ +++KP + + ++ L K+ +
Sbjct: 1341 -----------DLPIIAMTANAMQADKEKCLEAGMNDHLAKPIDPDAMFATLLKWRR 1386
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 111/176 (63%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+YGA I + ++ + + +AEAA AK+ FLA +SHEIRTPMN I+GM L L T
Sbjct: 846 MYGAYQDITRQKEADTLLHQALEKAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKT 905
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
+L+ Q+DY + Q G+ L+ +IN++LD +KIEA KL +E L +LD+V +L +E
Sbjct: 906 ELNPRQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLAVEHTEVYLDKVLDNVANLITE 965
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
K+ KG+EL V VP ++GDP R QI+ N N+VKFTE G I ++V L +
Sbjct: 966 KTTAKGLELVFDVGSDVPNDLVGDPLRLGQILINYANNAVKFTEAGEIAIRVRLGQ 1021
>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
Length = 946
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 136/408 (33%), Positives = 192/408 (47%), Gaps = 59/408 (14%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGIP R+F F QADSS +R YGGTG+GL+I K +VELM G I SR
Sbjct: 436 VHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGNIGVNSRVGA 495
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF F + + D+ + LP + LK +VVD+ PV V L GI
Sbjct: 496 GSTFWFQLSLVRSAAH-LPDLSR-----LPVYLEKLKVLVVDDVPVNLDVLTSQLGTYGI 549
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDC-WISGEDSGFNAQLLDWKPNGH 785
V + A+ L + P DI +++ ISGED A + P+
Sbjct: 550 TVTRAED----GFAAQAELERAWHAGHPYDIAFLDQMMPGISGEDL---ASRIRNNPDLA 602
Query: 786 VFKLPKLILLATNISK--DECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
KL + ++ SK +E D D + KPLR + CL +V S G
Sbjct: 603 DMKLVLVSSAGSHASKLHEENDT------LDARVEKPLRQHELLDCLMRVYS-------G 649
Query: 844 RGVPNGSSFHQGLL---------RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ + SS H + R +IL+ +DN +N+ VA L++ G +V A +
Sbjct: 650 APLVDSSSAHNRDVLEDGAATSARTLRILLAEDNKINQKVALAMLEQLGHSVTIAENGLQ 709
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A+D ++ H FD MDIQMPE+DG ATR IR + + +
Sbjct: 710 AVDAVRRGH-FDVVLMDIQMPELDGVGATRGIRALPAP-------------------KCD 749
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+PI+AMTA+ + + L CGMD Y+SKP + L+ +LAK + P
Sbjct: 750 IPIIAMTANAMEGAERKYLDCGMDDYISKPVRRDILFAKLAKVSAALP 797
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 127/202 (62%), Gaps = 12/202 (5%)
Query: 333 ALTTAFFLFVIGLLVG-----YILYGAA-------IHIVKVEDDFHKMQELKVRAEAADV 380
A+ T FL + LVG Y+ A+ ++I ++E ++ K +AEA +
Sbjct: 216 AIATVTFLIIALGLVGALVDNYLAQRASGEAERMRVYIAELEATKQELIAAKDQAEAGNR 275
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS FLA +SHEIRTPMNG+LGM LLL T L++ QR +A+T + G+AL+ ++N++LD
Sbjct: 276 AKSDFLANMSHEIRTPMNGVLGMTELLLTTALNAEQRKFAETVRESGEALLTIVNDILDV 335
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+K+EA +LEL+ + F+L ++ +SL + ++ K I+L ++ GDP R RQ
Sbjct: 336 SKLEAGRLELDHIDFDLVNTVESAISLMAARAAEKQIDLGAYIEPAARGIYRGDPARLRQ 395
Query: 501 IITNLVGNSVKFTERGHIFVKV 522
++ NL+GN++KFTE+G + V+V
Sbjct: 396 VLLNLIGNAIKFTEKGGVAVRV 417
>gi|383756738|ref|YP_005435723.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
gi|381377407|dbj|BAL94224.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
Length = 1182
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 188/398 (47%), Gaps = 43/398 (10%)
Query: 599 SEDVTLMVC-VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
+ED ++ C V+D+GIG+ + R+F F QADSS +R YGGTG+GL I+K LVEL G
Sbjct: 685 TEDCVMLRCAVQDSGIGLDAEQRSRLFQSFQQADSSITRRYGGTGLGLVIAKRLVELQGG 744
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I S P GSTF FTA G + +G +A+V D P V
Sbjct: 745 EIGVDSEPGAGSTFWFTAHLGVVAGRGARTWGDA-------ALRGRQALVADAHPRAREV 797
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
L G+ V ++ +D ++ A+ L D + + +C ++ A
Sbjct: 798 MVSMLRGFGLQVTLA---EDWAACAR--LLREADAAGRGVDVAVLECQLATAGGATPATA 852
Query: 778 LDWKPNGHVFKLPKLILLA-TNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
L+ H P+L+ +A N+ ++ D A+ V+ +P+ S + L ++L
Sbjct: 853 LEALALQHP---PRLVAVAGPNVVAEDEDSAE-----RAVLHQPVTPSRLLDTLMRLLVD 904
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+ + LRG+++L+ +DN +N+ VA L + G V+ A + A+
Sbjct: 905 PTSWRPASAAAPAADGGPAALRGRRVLLAEDNDLNQQVAVELLSELGLEVDVAENGLVAV 964
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+K++S H +D MD+QMPEMDG ATR IR + A LP
Sbjct: 965 EKVRSTH-YDLVLMDMQMPEMDGLSATRAIRALPGAA--------------------RLP 1003
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
I+AMTA+ + CL GMD +++KP + L +L
Sbjct: 1004 IVAMTANAMQGDVQRCLNAGMDDHIAKPIDPNRLATQL 1041
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
+ QEL AEAA AKS FLAT+SHEIRTPMN I+GM AL L+TDL+ QRDY Q
Sbjct: 525 LKRAQEL---AEAASAAKSNFLATMSHEIRTPMNAIIGMTALALNTDLNPRQRDYLHKIQ 581
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
G++L+A IN++LD +KIEA KLE+E F L +L +V + ++ KG+E V +
Sbjct: 582 TAGRSLLATINDILDFSKIEAGKLEIERREFELEEVLGEVCDQLAARAAAKGLEFVVDLG 641
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+VP ++GDP R Q++ NL GN+VKFTE+G + V++H+ +T
Sbjct: 642 TEVPRRLIGDPLRLGQVLLNLCGNAVKFTEQGGVCVRLHVQRQT 685
>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1437
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 356 IHIVKVEDDFHKMQELKVR--AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS 413
+H++ E + K+QE R AE A+ AKS FLAT+SHEIRTPMNG++GM +LL++TDL+
Sbjct: 896 LHLLNEELNKQKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVETDLN 955
Query: 414 STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSR 473
+ QR+YA+T CG +L+ +IN++LD +KIE+ K+++E + F+LR +++V+ LF +
Sbjct: 956 TEQREYAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVA 1015
Query: 474 NKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+GI+L + VP ++GD R +Q++ NL+ N++KFTE+G +FVK+ L ++
Sbjct: 1016 LRGIDLIYEIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEKGEVFVKISLLKQ 1069
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 192/393 (48%), Gaps = 50/393 (12%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+ L V DTGIGIP +F PF Q DSST+R YGGTG+GL IS+ LV+LM +I
Sbjct: 1075 IDLAFTVTDTGIGIPEEKLSNLFKPFSQVDSSTTRKYGGTGLGLVISERLVKLMGDEIWA 1134
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GS FSF ++ + + I+ S + D G +G K +VVD+ + +
Sbjct: 1135 ESNFGKGSVFSF-SIKAEISTAQLKRIQVSVNMD---GLEGKKILVVDDNQTNLTILKTQ 1190
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L + ++ +SS K+A + + ++++ F LV D + D A+ +
Sbjct: 1191 LQQWKLIPVTASSAKEALA-----ILAADNSFN----LVITDMEMPDMDGVGLAKAIK-- 1239
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
HV +I+L++ DE K G FA ++++KP + S ++ ++ L N+R+
Sbjct: 1240 ---HVHSNLPVIMLSS--IGDESSKKNPGLFA-SILVKPAKQSQLSKSIRAELG--NQRE 1291
Query: 842 AGRGVPNGSSFHQG---LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
++ +G LL ILV +DN +N+ + L K G T+E A+ L++
Sbjct: 1292 EKSTEEKSANTLEGGFSLLHPLSILVAEDNLINQKLIQRILNKMGYTIEIVANGYEVLEQ 1351
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP-I 957
+ +D MD+QMPEMDG E T+ IR+ + K P I
Sbjct: 1352 MM-LKTYDVILMDVQMPEMDGLETTQLIRKGKFKQ----------------------PFI 1388
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+AMTA+ + + C+ GMD Y++KP + + L
Sbjct: 1389 IAMTANAMLEDKEICISAGMDDYIAKPMKLDEL 1421
>gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1211
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 194/394 (49%), Gaps = 44/394 (11%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+E +TL V V DTGIG+ ER+F PF QAD +T+R +GGTG+GLSI+ LV+L+ G+
Sbjct: 563 AEPLTLRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGE 622
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAV 717
I S P GSTFSFT + G+ + + LPP +GL+ +VVD+ V
Sbjct: 623 IRVESTPGAGSTFSFTCLLGRHEPH-------KALCPLPPVDLRGLRVLVVDDNATARQV 675
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFN-A 775
+ L V+ + S + A S L + ++ QP ++++++ W+ E G A
Sbjct: 676 LRQTLASFSFRVEEADSGRRALSL----LARAAEEGQPYELVILD---WVMPEFDGLECA 728
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
+ P + + L++L T ++E + AG + KP+ S + + +
Sbjct: 729 AAIAADP---LIEPQPLLILLTAHGREEIREEAAGRGLRHFLTKPVLPSTLYDTIMECFG 785
Query: 836 TE---NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
E + G+ S + L G ++LV +DN +N+ VAA L G + A +
Sbjct: 786 QEGISRESDPGQRSDELESAAREKLAGSRLLVAEDNALNQQVAAELLAVVGIHCDLANNG 845
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A+++ + +D MDIQMPEMDG++AT IR + G V
Sbjct: 846 REAVEQYRR-QTYDGVLMDIQMPEMDGYQATGAIRALPV---------GQQV-------- 887
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
PI+AMTA + ++CL GMD ++ KP E
Sbjct: 888 ---PIIAMTAHALAGEREKCLAAGMDEHIPKPVE 918
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA--LIALINEVL 438
+KS+FLA +SHEIRTPMN I+G+ L L + R Y +I G A L+ LIN++L
Sbjct: 413 SKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLYDYLEKITGSAATLLTLINDIL 472
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +KIEA KL ++ V F+L IL+ + L + ++ KG+EL V VP ++GDP R
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGDPHRL 532
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAERT 528
Q++ NL N++KFTE G + + + + T
Sbjct: 533 GQVLINLTANAIKFTETGEVTISFEVVDPT 562
>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
ES-1]
gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
ES-1]
Length = 908
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 198/421 (47%), Gaps = 75/421 (17%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ V L V+DTGIG+ S +++F PF QAD+S +R +GGTG+GL+ISK L+E+M G+I
Sbjct: 403 DQVVLRFAVKDTGIGMSQSEIDKLFRPFTQADTSITRKFGGTGLGLTISKRLIEMMGGKI 462
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP----PGFKGLKAVVVDEKPVRA 715
S P GS F FTA F K K E+ P GF G++ + VD+
Sbjct: 463 WVESTPGSGSKFIFTANFLKAK----------GRENAPRTEFAGFDGMRVLAVDDSENSL 512
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
++ + +L V ++S+ + A ST + + + F+
Sbjct: 513 SILKNYLESFSFDVSVASNGRSALSTVRKA---------------------NKDGKPFSL 551
Query: 776 QLLDWK-PNGHVFKL-------------PKLILLATNISKDECDKAKAGGFADTVIMKPL 821
+LDWK P +L PK++L+A ++ + D V+ KP
Sbjct: 552 AILDWKMPEMDGLELARELHAMTEAENKPKILLIA-GYGQNGTPALRNNKVVDGVLEKPF 610
Query: 822 RASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGL---LRGKKILVVDDNGVNRMVAAGA 878
+ + + ++ S ++ G+ G+ F+ L +RG +L+V+DN +N+ VA
Sbjct: 611 NQNKLFDAISRI-SGPDQSATGKFRITGAQFNPLLVSQVRGAHLLLVEDNEINQQVAQEL 669
Query: 879 LKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
L+ FG V A + + A+ +L FD MD+QMP MDG ATR IR+ A
Sbjct: 670 LEGFGIKVAVAENGEEAIARLNEEQ-FDGVLMDMQMPVMDGISATREIRKNPKFAT---- 724
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+A+TA+V + + L GM+ ++ KP + + L LAK+
Sbjct: 725 ----------------LPIIALTANVYVSEQNAFLAAGMNDHIGKPLDPDRLVATLAKWL 768
Query: 999 K 999
+
Sbjct: 769 R 769
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 21/226 (9%)
Query: 317 HKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKM-------- 368
HK I R + + A+ + LFVI +L + G + + +V ++ +KM
Sbjct: 175 HKAIRRSDRAQGS--GAIIGSVMLFVIAILTLLVNRGIVV-LERVVENRNKMLLLVNSEL 231
Query: 369 ----------QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
+E + AEAA K +FLA +SHE+RTPMN ++G+ L L T+LS Q+D
Sbjct: 232 EQEIQKLKSAEEARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTELSDKQQD 291
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
Y Q K+L+ ++N++LD +KIEA K+EL+ + F L +L ++ ++ KS K +E
Sbjct: 292 YLQKIHSSAKSLLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAKSHEKNLE 351
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
L + + VP ++GDP R Q++ NL GN+VKFT +G + V + L
Sbjct: 352 LLLETAPDVPSVLVGDPLRLGQVLINLAGNAVKFTAKGEVVVSIDL 397
>gi|375104871|ref|ZP_09751132.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
gi|374665602|gb|EHR70387.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
Length = 812
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 112/162 (69%), Gaps = 3/162 (1%)
Query: 366 HKMQELKVR---AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQT 422
+ QEL++ AE A AKS FLA +SHEIRTPMNG+LGML LL DT LS QR +A T
Sbjct: 263 RRTQELRLAKDAAEDASRAKSAFLANMSHEIRTPMNGVLGMLDLLRDTRLSERQRHFADT 322
Query: 423 AQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVF 482
A G+AL+A++N++LD +KIEA ++ LE F L ++DD L LF+ ++ KG+EL
Sbjct: 323 AHSSGEALLAILNDILDFSKIEAGRMALEHAPFELAPLVDDALGLFARDAQAKGVELLAQ 382
Query: 483 VSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
V +PE +LGDP R RQI+TNL+ N+VKFT RG + V+ L
Sbjct: 383 VDAALPEHLLGDPLRLRQILTNLLSNAVKFTARGEVIVQARL 424
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 197/436 (45%), Gaps = 45/436 (10%)
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVT-LMVCVEDTGIGIPLSAQERVFMPFMQADSSTS 635
L +A F + +I + G++ L + V D+G+G+ RVF F QAD ST+
Sbjct: 406 LSNAVKFTARGEVIVQARLDSGTDGAPWLALAVRDSGVGMDAPTLARVFDAFSQADVSTT 465
Query: 636 RHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED 695
R YGGTG+GL+I + L LM G++ S P GSTF+ + + + +
Sbjct: 466 RRYGGTGLGLTICRRLASLMGGELVATSTPGAGSTFTLRLPLAEAPDG---SARPAAPAG 522
Query: 696 LPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP 755
+PP GLKA+VVD+ + + L +G+ + +A + NG ++
Sbjct: 523 MPP---GLKALVVDDNATGREILLHQLQGMGLAAHSAHGGLEALAQ-LNGAVREGRPYEL 578
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADT 815
++L ++ ++G A + + + LP +L + + D D A
Sbjct: 579 -LVLDDRMPGMTG-----RAVVRALRGDARFADLPIAMLTSVD---DRRDDALGPDAVQA 629
Query: 816 VIMKPLRASMIAACLQQVLS--TENKRQAGRGVPNGSSFHQGLLRGK---------KILV 864
+ KP+R + L ++ + R A G P+ R + ++L+
Sbjct: 630 WLTKPVRRKTLHETLLRLAAGGAAPSRPAPLGEPSVLGGLDDAPRARDGGPSATRPRVLL 689
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATR 924
+D+ VN++VA L++ G A + + A+ + + FD MD MPE+DGF+ATR
Sbjct: 690 AEDHPVNQLVAQTRLRELGCDTVLATNGREAVARWRE-GGFDLVLMDCHMPELDGFDATR 748
Query: 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
IR +E G S DG PI+A+TA+ + + CL GMD ++ KP
Sbjct: 749 EIRALE----------GPSGDGR------RTPIIALTANAMAGDRERCLAAGMDEHLPKP 792
Query: 985 FEEENLYRELAKFFKS 1000
F + L L ++ ++
Sbjct: 793 FTRDQLQAALQRWLQA 808
>gi|398846008|ref|ZP_10603014.1| PAS domain S-box [Pseudomonas sp. GM84]
gi|398252999|gb|EJN38150.1| PAS domain S-box [Pseudomonas sp. GM84]
Length = 1462
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 200/411 (48%), Gaps = 50/411 (12%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E V+L + DTGIG+ + ER+F F QADSS +R YGGTG+GLSISK LVE+M G+I
Sbjct: 884 EQVSLHFWMRDTGIGMSVEQCERMFQSFSQADSSITRKYGGTGLGLSISKKLVEMMGGRI 943
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GSTF F G + Q++ G++ +VVD+ A +
Sbjct: 944 WVESTLGQGSTFHFQVRLG------LQQGAQAQRMFNAGELLGMRVLVVDDN----ASAR 993
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGED-----SGF 773
L + + + + + + A L S+E + QP D++L+ D + G D S
Sbjct: 994 EILCAMARSFGLEADVAQSGTEALGLLASAEARAQPYDLVLM--DWRMPGMDGMETVSRM 1051
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDEC-DKAKAGGFADTVIM-KPLRASMIAACLQ 831
NA L P +++ T +DE ++A+ G V++ KP+ S + +
Sbjct: 1052 NADSLRHTPP---------VIMVTAFGRDEAQEEAERQGIQIPVVLTKPVTPSSLLEAIG 1102
Query: 832 QVLSTENKRQAGRGVPNG-SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
VL + + +G S+ +Q LRG ++L+V+DN +N+ +A L+ G T+ A
Sbjct: 1103 TVLGRVQQGETRAAERSGHSASNQAGLRGARLLLVEDNEMNQELARELLESVGVTLRLAG 1162
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ ALD L FD MD QMP MDG+ ATR+IR+ A
Sbjct: 1163 HGQEALDILAVDSRFDGVLMDCQMPVMDGYTATRKIREQPRFA----------------- 1205
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LP++AMTA+ + ++ L GM+ ++ KP + ++ LA++ + K
Sbjct: 1206 ---QLPVIAMTANAMEGDREDALASGMNDHIPKPLNVDAMFATLARWIRPK 1253
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + V D ++ + + AE A AKS+FLA +SHEIRTPMN I+GM L L T L
Sbjct: 707 GTPLRATGVNIDVTELIKARAVAEEATRAKSEFLANMSHEIRTPMNAIIGMSHLALRTGL 766
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
S QR Y + + L+ +IN++LD +KIEA ++ LE + F L +LD +L K+
Sbjct: 767 DSKQRHYIEKVHRSAENLLGIINDILDYSKIEAGRMGLEYIPFRLEDVLDSFANLIGLKA 826
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
K +EL +P ++GDP R QI+ NL N+VKFTE G + V
Sbjct: 827 EEKKLELLFQTPPDLPTALIGDPLRLGQILINLGNNAVKFTETGEVVAGVE 877
>gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus
Nitrospira defluvii]
Length = 578
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 108/151 (71%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AEAA +AKSQFLA +SHEIRTPMNG+LGM LLL T L+ TQR YA T G L+
Sbjct: 315 KEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTELLLTTPLNDTQRRYAHTVHNSGTNLL 374
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA +L LE + F LR +L + + L+ E++R KG+ L+V ++ +P+
Sbjct: 375 HIINDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHEQARKKGLALSVTMTPDIPDMA 434
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
GDP R RQI+TNLVGN++KFTE G + V V
Sbjct: 435 HGDPHRLRQILTNLVGNALKFTETGTVAVFV 465
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGIPL AQE++F F QAD S +R YGGTG+GL+I K LV +M GQ+ S P
Sbjct: 479 VTDTGIGIPLQAQEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGLTSTPGQ 538
Query: 668 GSTFSFT 674
G+TF FT
Sbjct: 539 GTTFWFT 545
>gi|374814064|ref|ZP_09717801.1| sensory transduction histidine kinase [Treponema primitia ZAS-1]
Length = 937
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 176/645 (27%), Positives = 275/645 (42%), Gaps = 134/645 (20%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA---- 429
+AE A AK+ FLA +SHEIRTPMN I+GM T ++ + DY + K
Sbjct: 408 QAEKASKAKTDFLANMSHEIRTPMNAIIGM------TSIAKSSSDYEKKEYCLNKISEAS 461
Query: 430 --LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+ +IN++LD +KIEA K +L F +L V+++ + + K L V +
Sbjct: 462 THLLGVINDILDMSKIEANKFDLSPDEFVFEKLLQKVVNVINFRVEEKSQILTVHFDKNI 521
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
P GD R Q+ITNL+ N+VKFT E G I + L ++ + T+ T+
Sbjct: 522 PRSFYGDDQRLAQVITNLLSNAVKFTPELGTIKLDTQLEKKEGIIY-----TIRISVTDS 576
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ S Q S E A+ S KF GG
Sbjct: 577 GIGISQEQQSRLFSSFEQAETGTS-RKF----------------------GG-------- 605
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ +S K +VE+M G I S
Sbjct: 606 ----TGLGLAIS------------------------------KRIVEMMGGTIWIESELG 631
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDE-KPVRAAVTQYHLN 723
G++F FT ++ E + L PG +K L+ + VD+ + +RA +
Sbjct: 632 KGASFIFTVKLELGPDHPEESL-------LSPGINWKNLRVLAVDDSEDIRAYFLELA-E 683
Query: 724 RLGIMVKMSSSIKDA-SSTAKNGLTSSE--DKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
RLG + ++S +DA + KNG D P + +E WI+ + + N Q
Sbjct: 684 RLGFNCETAASGEDAIARIEKNGPYDMYFVDWKMPGMDGIELSRWINEKAAVQNQQ---- 739
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN-- 838
+ + K +++ AT + E D KAG + KPL S +A + Q L
Sbjct: 740 --DAVLSKSVVIMISATEWNTIEDDAKKAG--VAKFLPKPLFPSALADIINQCLGKNTIV 795
Query: 839 -KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
++ + V + S G+ IL+ +D +N+ + L+ ++CA + AL
Sbjct: 796 AASESEKTVADDFS-------GRHILLAEDVEINQEIVIALLEPTSIMIDCAGNGAEALR 848
Query: 898 KLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
P +D MD+QMPEMDG+EATR+IR +G + D +P
Sbjct: 849 IFSGDPAKYDIILMDVQMPEMDGYEATRKIRA----------SGLPNAD--------TIP 890
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA+V ++CL GM+ +V KP + E + +L + K
Sbjct: 891 IVAMTANVFREDIEKCLAVGMNDHVGKPLDFEEVLAKLRLYLGKK 935
>gi|381165683|ref|ZP_09874910.1| Putative two-component sensor histidine kinase, hybrid system
[Phaeospirillum molischianum DSM 120]
gi|380685173|emb|CCG39722.1| Putative two-component sensor histidine kinase, hybrid system
[Phaeospirillum molischianum DSM 120]
Length = 865
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 195/398 (48%), Gaps = 56/398 (14%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + +EDTGIGIP +AQER+F F+QADSSTSR +GGTG+GL+IS L ++M G+I+F S
Sbjct: 512 LTITIEDTGIGIPAAAQERLFDKFIQADSSTSRRFGGTGLGLAISLKLAKVMGGKINFSS 571
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
GSTF ++ S L GL ++V+ A + L
Sbjct: 572 AEGQGSTFLIRLPL----------VRSSPPRPLERPLAGLSLLLVENGIQAATLLTADLT 621
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDC-WISGEDSGFNAQLLDWK 781
LG V ++S +A +TA+ +++ P D ++V+ D +++G D LL
Sbjct: 622 ALGADVIQAASAPEALATAR----AAQSGGTPFDALVVDHDMPFVTGTD------LLVML 671
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVI-MKPLRASMIAACLQQVLSTENKR 840
F + +L + S +A A + V+ KP+ A +A L + E +
Sbjct: 672 KAEPFFAATRCVLTVNDASA----RAIAETLENVVVTTKPIHALRLARDLTATSAPEEPQ 727
Query: 841 QAGRGVP-NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+ P G S H IL+V+DN +N+ VA G L G VE A++A + +
Sbjct: 728 PSASERPATGPSLH--------ILLVEDNRINQEVARGFLSSLGHDVEIASNAVEGV-AM 778
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ FD MD+Q+P+MDG+ AT+ IR S+DG R +P++A
Sbjct: 779 VVRNTFDLVLMDVQLPDMDGYRATQLIR---------------SLDGPQAR----VPVIA 819
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
MTA+ + D CL GMD Y+SKP L LA++
Sbjct: 820 MTANAMEGDRDRCLAAGMDDYLSKPIRRPILAATLARW 857
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 96/147 (65%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AE+A KS+FLAT+SHEIRTPMNGI+GM LLLDT L+ QR A T ++L+
Sbjct: 355 KEEAESATRIKSEFLATMSHEIRTPMNGIVGMTDLLLDTPLTEDQRRMADTIHASAESLL 414
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA +++ F LR +++ + + S + + K ++L ++ +
Sbjct: 415 TIINDILDYSKIEAGHFDIDEQPFCLRTLIEGGIDIVSPRLKGKSVDLLFSIAPEADATF 474
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHI 518
+GD R RQI+ NL+GN+VKFTE G +
Sbjct: 475 IGDEVRIRQIMLNLLGNAVKFTEFGTV 501
>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 1765
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 196/399 (49%), Gaps = 45/399 (11%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+D+ L V D GIG+ + R+F F QAD+ST+R YGGTG+GL+ISK LVELM G+I
Sbjct: 1185 DDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEI 1244
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+ GSTF F+ V + +K + +G++ +V D+ + +
Sbjct: 1245 GVESQFGNGSTFFFS---------VRLKVADNKLLKVKHEIEGMRILVADDNATARDILR 1295
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L +G +V DA + + + + P + L++ W E +G A +
Sbjct: 1296 TTLESMGFVV-------DAVKSGSDAIERCQHTHYP-VALID---WQMPEMNGLEAAEVI 1344
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ PK+++++ + + + ++ + G A I KP+ AS + + L
Sbjct: 1345 FAEQE---TPPKVLIVSAHANAEFLEQIERSGIA-GYITKPISASRLLDGIMSSLGKNGT 1400
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
R + S G L+GK+IL+V+DN +N+ VA L++ G + A + + AL+KL
Sbjct: 1401 MAVRRQGADISQELLGQLQGKRILLVEDNDMNQEVATEFLEQVGVVLSIADNGQIALEKL 1460
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ FD MD QMP MDG++ATR +R++ AN LP++A
Sbjct: 1461 -AMQSFDLVLMDCQMPVMDGYQATRELRKLPGLAN--------------------LPVIA 1499
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
MTA+ + + CL GM+ +++KP E LY L ++
Sbjct: 1500 MTANAMAGDREMCLDAGMNDHIAKPIEVSLLYSRLLQYL 1538
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 110/161 (68%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K A+AA+ AKS FLA +SHEIRTPMN I+GM L L T+L + Q++Y Q
Sbjct: 1023 LKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDAKQQNYIQKIDRAS 1082
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
K+L+ +IN++LD +KIEA KL++E+V F L +L+D+ +FS K+ +K +EL V+ +
Sbjct: 1083 KSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMFSVKASDKRLELLFAVAPNI 1142
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
P +LGDP R Q++ NL+ N++KFTE+G + + + ER
Sbjct: 1143 PRHLLGDPLRLSQVLINLMNNAIKFTEQGEVLLSISQLERV 1183
>gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 1364
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 196/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K PP + V+ E R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSS---------------PPQAQRELPVLPPEAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EERPGAR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGAPVMTSPISLSGYRV 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
+ G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PNESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Diplosphaera colitermitum TAV2]
gi|224802028|gb|EEG20304.1| Histidine kinase [Diplosphaera colitermitum TAV2]
Length = 678
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 123/185 (66%), Gaps = 2/185 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G GY+ G+ + I + + ++ + +A A KSQFLA +SHEIRTPMNGI+GM
Sbjct: 13 GAFCGYV--GSVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGM 70
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
LLLDT LS QR++A+ Q +AL+A+IN++LD +KIE+ +L ++ V F+LR +++D
Sbjct: 71 SGLLLDTRLSPEQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVED 130
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
L+L E++ +K IEL +P + GDPGR RQIITNLVGN++KFTERG + V V
Sbjct: 131 TLALLGERAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERGEVSVTVT 190
Query: 524 LAERT 528
+ T
Sbjct: 191 RIQET 195
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 182/395 (46%), Gaps = 50/395 (12%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ V DTGIG+ + +F PF+QAD S +R +GGTG+GL+IS+ L+E+M G+I F ++P
Sbjct: 203 ISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMGGRIGFTTKP 262
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GSTF F C + E D+PPG + L VVD+ + L ++
Sbjct: 263 GRGSTFWFDL----CLPKLLEATPLPLQLDVPPGTRIL---VVDDSATNLRILDGQLRQM 315
Query: 726 GIMVKMSSS-------IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
G+ V+ S + AS T + D++ P + +E I +
Sbjct: 316 GLGVETLSDPTRTLARLHHASQTGSPFQIAILDRYMPVLDGIELARRIRADS-------- 367
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
+ + K+++L + E D+ + G D ++KP R + L +VL
Sbjct: 368 -------ILQRMKVVMLTSASHLGELDRVRQLGL-DAFLVKPTRQLQLRQSLARVLGAPI 419
Query: 839 KRQAGRGVPNGSSFHQGLL---RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
P+ S Q +L ++LVV+DN +N+ VA L++ G T + A + A
Sbjct: 420 TADGSSPHPDESDTRQIVLPDAHTPRVLVVEDNLINQKVAQRHLERLGHTCDVAEHGRRA 479
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L+ L H + MD QMP +DG+E TRRIR +V G R +
Sbjct: 480 LEMLALHHDYALILMDCQMPVLDGYETTRRIR-------------AGAVPGLDPR----I 522
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
PI+A+TA + +CL GMD + KP E L
Sbjct: 523 PIVALTAYAMETDRQKCLDAGMDDCLIKPVRLEEL 557
>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
Length = 1763
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 194/410 (47%), Gaps = 68/410 (16%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+ V L V D+GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G+I
Sbjct: 1185 DQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEI 1244
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+ GSTF FT V + Q+ ++ +G+ +VVD+ + +
Sbjct: 1245 GVDSQFGNGSTFYFT---------VSVKVAQNAQLNVEQELEGMAVLVVDDNSTARDILR 1295
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L +G V +A++G+ + E E+D I+ L+D
Sbjct: 1296 TTLQSMGFSV----------DSARSGMEALEK-------CAERDYRIA---------LID 1329
Query: 780 WK----------PNGHVFKLPKLILLATNISKDE-CDKAKAGGFADTVIMKPLRASMIAA 828
WK K P LIL+ + + E DK + G + I KP+ AS +
Sbjct: 1330 WKMPEMDGTETAARMRELKQPPLILMVSAHANSEFIDKVEEMGI-NGYITKPISASRLLD 1388
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
+ L + + R + L+GK+IL+V+DN +N+ VA+ L++ G +
Sbjct: 1389 GIMSALGRQGHKPVRRKAQPMDAQKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSI 1448
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A + + AL+KL FD MD QMP MDG++ATR +R++ A
Sbjct: 1449 ADNGQIALEKL-GQQSFDLVLMDCQMPVMDGYQATRELRKLPGLA--------------- 1492
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP++AMTA+ + + CL GM+ +++KP E LY+ L ++
Sbjct: 1493 -----ELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYL 1537
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 103/151 (68%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A+AA+ AKS FLA +SHEIRTPMN I+GM L L T+L QR+Y + + K+L+
Sbjct: 1027 KEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERASKSLL 1086
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL++E V F L IL+D+ +FS K+ +K +EL V+ VP +
Sbjct: 1087 GIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGVPTHL 1146
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
GDP R Q++ NL+ N++KFTERG + + +
Sbjct: 1147 EGDPLRLSQVLINLMNNAIKFTERGEVMLSI 1177
>gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
Length = 1364
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 199/410 (48%), Gaps = 54/410 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G V L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKVKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K P + L A+ + P R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKAAS--------------PKSHQDLPALPPEAMP-RV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALSNLVRITTDLGWRVDAVASGQAALQAIEQASEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ ++ +
Sbjct: 952 VAIAREIRARAAPGPH-----PVIVMVTAYERRLLEQHPDQQDLDAVMTKPVTSAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q++ ++R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLV---DERPGAR--PVTPTFVARRLEGTHLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A++ L+ +P F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAINTLKRAPDLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP++A+TA ++ L+ GM+G+++KPF E L + F
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFM 1151
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + KM E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKMHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVTKIDRSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 114 QDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSP--IRDE 169
+D F Y+ + R P + G Y RV A F + T +++ +P R
Sbjct: 89 RDRFTLYSRSRDYAREFPGVLGYGYIHRVAPADEAAF-------LQTARADGAPDIHRRL 141
Query: 170 YAP------VMFYQEPMSHVK---SLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S LD+ S R L+A +G+ ++T P L G
Sbjct: 142 LAPWDGERYIVLYFEPESSGNRPIGLDIASEPRRRAAALQAARSGEPIMTSPVSLSGYRV 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
G ++ PVY+ +P T ++R+ AT G++ PF VE +V++ LG+
Sbjct: 202 PSESGFLVLLPVYREGMP-LQTPQQRMAATNGWVYAPFAVEQMVQSALGE 250
>gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC
15444]
gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC
15444]
Length = 944
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 203/438 (46%), Gaps = 52/438 (11%)
Query: 577 LIDAEGFQSNASII-NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTS 635
L +A F N ++I ++ DV L + V D+GIG+ Q ++F F QADSST+
Sbjct: 325 LSNAVKFTENGTVIVRADVASSQDRDVVLELSVRDSGIGMDEQQQAKLFKSFSQADSSTT 384
Query: 636 RHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED 695
R +GGTG+GL+I + +VE M G I S+ GSTF+F + + ED Q S+
Sbjct: 385 RQFGGTGLGLAICRQIVEQMGGNIRVESKIGEGSTFTFRI------KVLVEDEHQQDSDR 438
Query: 696 LPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP 755
LP + L + D+ P + + V + +S ++A S L S+ K P
Sbjct: 439 LPAQIQTLNVLAADDNPAARQIIHEIFASWDMAVDLVASGEEALS----ALDSANKKGTP 494
Query: 756 -DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFAD 814
D++L+ D + G D A+ + + G+ K+P + L+ T DE +
Sbjct: 495 YDLVLL--DWKMPGMDGMDTARAM--RSAGNQEKMP-ITLMVTAYCADEFMQEARAADIS 549
Query: 815 TVIMKPLRASMIAACLQQVLSTE----------NKRQAGRGVPNGSSFHQGLLRGKKILV 864
+ KP+ M+ + + S + QA R P ++ H+GL +ILV
Sbjct: 550 AFLQKPVDPRMLRDTILDLFSGQPPADTLTSANAPAQAARTSPRIAAAHEGL----RILV 605
Query: 865 VDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEAT 923
VDDN +NR +AA L+ G +CA + + A + ++ + MD+QMPEMDG AT
Sbjct: 606 VDDNEINREIAAELLRDAGLETDCAENGRIACGMMIENGDNYACVLMDVQMPEMDGIAAT 665
Query: 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983
R IR+ A LPI+AMTA C GM+ +++K
Sbjct: 666 RAIRESWPAA--------------------RLPIIAMTAHAYEEEKQRCFDAGMNDHIAK 705
Query: 984 PFEEENLYRELAKFFKSK 1001
P + L +L ++ ++
Sbjct: 706 PVDPTELIEKLNRWLTAR 723
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 100/151 (66%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AKS FLA++SHEIRTPMN ILG L+ TDLS Q+D+ G +L+ LI
Sbjct: 194 AEEANRAKSLFLASMSHEIRTPMNAILGFCHLIARTDLSPKQKDHVSKINDAGVSLLRLI 253
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +K EA KL LEA F++RA + + ++L + + NK ++L +S VP ++GD
Sbjct: 254 NDILDFSKNEAGKLTLEARPFDVRAAITNQINLVNIDADNKRVKLETRISPAVPRKIIGD 313
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525
RF Q++ NL+ N+VKFTE G + V+ +A
Sbjct: 314 ELRFNQVVLNLLSNAVKFTENGTVIVRADVA 344
>gi|393714282|emb|CCH15049.1| cytokinin response 1, partial [Eleusine coracana]
Length = 234
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 654 LMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV 713
+M GQI+FVSRP VGSTF+FTAV +C D K LP F GL A++VD++PV
Sbjct: 5 IMGGQINFVSRPHVGSTFTFTAVLRRCDRSAISDSKPVVLHSLPSCFNGLSAILVDKRPV 64
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
RA VT+YHL RLGI ++ S + A S + +NG + K QP ++L+E D W S D+
Sbjct: 65 RATVTKYHLQRLGITSEVVGSTELALSMLSGRNGSSLISLK-QPSMLLIENDSWGSNMDT 123
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
+LL+ K +G PK+ILLA + E DK A D+VI KPL+AS +A CL
Sbjct: 124 SLRTKLLEMKNSGCTPVSPKVILLAAS----ESDKLTANYTVDSVITKPLKASTLATCLF 179
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN 871
Q L + R S +GLL GK ILVVDDN VN
Sbjct: 180 QALGIKQSRTEKL---EDSGSLRGLLLGKNILVVDDNKVN 216
>gi|411011072|ref|ZP_11387401.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas aquariorum AAK1]
Length = 886
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 202/419 (48%), Gaps = 77/419 (18%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
++V L V+DTGIG+ Q+R+F F QADSST+R YGGTG+GL+I + L LM G++
Sbjct: 306 QEVLLHCSVQDTGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAICRKLAGLMGGEV 365
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S P GSTF FTA G+ + + S DL +G + +V D+ +
Sbjct: 366 GVQSEPGQGSTFWFTARLGRGRRRS----RYLPSLDL----RGRRMLVADDSASARTI-- 415
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L +++ S + D + + + L D Q + + + LLD
Sbjct: 416 -----LAALLRGMSFVVDTAESGQQALQMIADAEQ--------------QGTPYEVVLLD 456
Query: 780 WKPNG--HVFKLPKLI----------LLATNISKDEC-DKAKAGGFADTVIMKPLRASMI 826
W+ G + +LI ++ T ++E +A A GF D V++KP+ AS++
Sbjct: 457 WRMPGLDGIETGRRLIARGAGRRPYRVMVTGYGREEIFREADAAGF-DRVLVKPVCASVL 515
Query: 827 AACL-----QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
+ QQ + K QA H G +IL+ +DN +N+ VA L+
Sbjct: 516 FDTVIGLFGQQAATLSFKHQAT---------HHYRFDGLRILLAEDNELNQQVALELLQA 566
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
GA V A++ ALD + + +D MD+QMP MDG ATR++RQ E
Sbjct: 567 VGAKVSVASNGAIALD-MATKAPYDLILMDMQMPVMDGLAATRQLRQQE----------- 614
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
GT + H+PILAMTA+V+ + CL GMD +++KP + + LY L ++ S
Sbjct: 615 ----GTGQ----HIPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDKLYDALQRWATS 665
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 99/153 (64%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE+A AKS+FLA +SHEIRTPMN ILGM L L T L Q DY Q + L+ +I
Sbjct: 151 AESATRAKSEFLANMSHEIRTPMNAILGMSHLALQTRLDPQQLDYVSKIQRAAQHLLGII 210
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL+LE + F+L +L+++ +L EK+ KGIEL V ++ + GD
Sbjct: 211 NDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 270
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
P R QI+ N N+VKFTE+G I VKV E+
Sbjct: 271 PLRLGQILINYANNAVKFTEQGEILVKVRCLEK 303
>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
Length = 1235
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 195/420 (46%), Gaps = 76/420 (18%)
Query: 603 TLMVCVEDTGIGIPLSAQERV---FMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
TL V DTGIGI QER+ F PFMQ DSS +R YGGTG+GL+IS+ L ELM G+I
Sbjct: 633 TLRFSVIDTGIGI---EQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRI 689
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+ VGS F FT CK D +++ KG++A+VVD+ + V
Sbjct: 690 WVESQLNVGSQFHFT-----CK-LTLNDSEKTPLMPFHNRLKGMRALVVDDNAMAREVLA 743
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L LG+ V +T +G ++ +EK C + + ++ LD
Sbjct: 744 DILTSLGLEV----------TTVADGYAGIDE--------LEKAC---SKQTPYDVVFLD 782
Query: 780 W--------------KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
W + N H+ K P +L+ T D+ + +I KP+ AS
Sbjct: 783 WNIPGINGVETASKIERNVHITK-PAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDASC 841
Query: 826 IAACLQQVLSTENKRQA---GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
I L ++ E + R + +S LR KK+L+VDD+ +NR VA+ L
Sbjct: 842 IHDNLVEIFFQEKTSRTCAQKRELNLNNSLDLSALRDKKVLIVDDSILNREVASEFLLDV 901
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G V A + + ALD + H +D MD+QMP MDG AT+++R
Sbjct: 902 GIQVSTANNGQQALDMINQYH-YDLVLMDVQMPVMDGLTATKQLR--------------- 945
Query: 943 SVDGTAKRDELH--LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
++ LH LPI+AMTA + L GM+ +++KP + + LY + ++ +
Sbjct: 946 -------KNPLHKQLPIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRWIDA 998
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 109/168 (64%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
KV + ++ E + +AE+A AKS FLA +SHE+RTPMN I+G+ L+L T L+ QRD+
Sbjct: 460 KVSERTSELVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQLNKRQRDF 519
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ L+ +N+VLD +KIEA KL L+ F++R +L V ++ + K++ KG+EL
Sbjct: 520 MEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVEL 579
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+ + KVP +GDP R QI+ NL N+VKFTE+G + ++V L E+
Sbjct: 580 LLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQGEVIIRVKLLEQ 627
>gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1450
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 202/419 (48%), Gaps = 42/419 (10%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+I + G++ V L V DTGIG+ R+F F QAD ST+R YGGTG+GL+I
Sbjct: 842 LIGVRVEAEGADWVCLGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAIC 901
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L ELM G+I S P G+ F F+ G+ + E E LP L+ +VV
Sbjct: 902 KYLTELMGGEIGVESEPGAGTCFRFSVRLGR-QRAAPEGALHVARELLP-----LRVLVV 955
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D+ A+ + L +LG + SS +A + L + E + D++L+ D + G
Sbjct: 956 DDNASARAILTHMLQQLGFGAEAVSSGAEAIAR----LRAVETQAPFDLMLL--DWKMPG 1009
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
D + L + V ++P LI++ T ++ +A A + KP+ S +
Sbjct: 1010 LDGVQTIRAL--RAEAAVSQVPALIMI-TAYGREGVRQASADLGVAGFLTKPVAPSALLN 1066
Query: 829 CLQQVLS---TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
L + +E R A R +S LRG +L+V+DN +N+ +A L G +
Sbjct: 1067 TLMHAIGHEVSELTRAASR--QEAASEACARLRGAHVLLVEDNELNQELALELLVSNGLS 1124
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
VE AA+ + ALD+L FD MD QMP MDG+ ATR IR
Sbjct: 1125 VEIAANGQEALDRLAGESRFDGVLMDCQMPVMDGYTATRAIR------------------ 1166
Query: 946 GTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
+R EL LP++AMTA+V+ ++ L GM+ ++ KP +++ +AK+ + L
Sbjct: 1167 ---RRPELAGLPVIAMTANVMSGDREKALAAGMNDHIGKPINVRDMFTTMAKWIRPAHL 1222
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE A AKS FLA +SHEIRTPMN I+GM L L T L + QRDY + +AL+
Sbjct: 694 KEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTPLDARQRDYIEKVHRSAEALL 753
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++N++LD +KIEA +L++E + F L ++D++ +L K+ +KG+EL + +VP +
Sbjct: 754 GILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLKAEDKGLELMFDLPPEVPTAL 813
Query: 492 LGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHL 524
+GD R QI+TNL N+VKFTE G I + V +
Sbjct: 814 IGDALRLGQILTNLGNNAVKFTEPGGEILIGVRV 847
>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1523
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 198/435 (45%), Gaps = 60/435 (13%)
Query: 573 KFKH----LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
KF H +I AE Q A+ V L + V DTGIGIP AQ ++F PF
Sbjct: 978 KFTHQGEVVIQAELMQETAT------------HVQLRLSVRDTGIGIPKDAQTKLFQPFT 1025
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
Q D+ST+R YGGTG+GL+I K L ELM G+I S GSTFS + + Y +
Sbjct: 1026 QVDASTTRKYGGTGLGLAICKQLTELMGGRIFLESEEGRGSTFSLELTLER-QPYARQIS 1084
Query: 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTS 748
+Q +P +G + +VVD+ + +Y G++V+ + + A + +
Sbjct: 1085 QQPAR--IPVDLQGKRLLVVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQA--A 1140
Query: 749 SEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAK 808
E P +L + + GE G W +L+++ + + +A
Sbjct: 1141 REGIPFPLAVLDMQMPEVDGETLG------RWIKADPELSQTQLVMMTSLGLGEHSRRAA 1194
Query: 809 AGGFADTVIMKPLRASMIAACLQQVLSTENKRQA---------GRGVPNGSSFHQGLLRG 859
GFA + KP++ + + L L + + P+ S Q L
Sbjct: 1195 EIGFA-AYLTKPVKQTRLQEALVMALGKSSGLATSLLGMGPPLSQSAPSASRPQQPL--- 1250
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+IL+ +DN VN+ VA L+ G + A+ + LD LQ +D MD QMP MDG
Sbjct: 1251 -RILLAEDNPVNQKVALRQLQSLGYMADVVANGQEVLDLLQRVQ-YDLILMDCQMPVMDG 1308
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+EATRR+RQ E + + + ++A+TA+ + + CL+ GMD
Sbjct: 1309 YEATRRLRQQERGSGHRTV------------------VIAITANAMQEDRERCLQAGMDD 1350
Query: 980 YVSKPFEEENLYREL 994
Y+SKP +E+L R L
Sbjct: 1351 YLSKPVLKEDLERVL 1365
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 106/146 (72%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S FLAT+SHEIRTPMN +LGM LLL+T L++ QRD+ +T ++ G AL+ LIN++LD +K
Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRVSGDALLTLINDILDFSK 909
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
+E ++ELE + F+LR+ L++V LF+ + KG+ELAV V +VP ++ GD R RQI+
Sbjct: 910 LEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLRQIL 969
Query: 503 TNLVGNSVKFTERGHIFVKVHLAERT 528
NLV N++KFT +G + ++ L + T
Sbjct: 970 NNLVSNAIKFTHQGEVVIQAELMQET 995
>gi|410664403|ref|YP_006916774.1| sensor protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409026760|gb|AFU99044.1| sensor protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 906
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 137/445 (30%), Positives = 214/445 (48%), Gaps = 38/445 (8%)
Query: 106 FKNPSALDQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQ------HGMTITTM 159
F + S D F ++ + L GVA+ PRV QR QFER G I +
Sbjct: 256 FTSQSEFDWAAFERFSQTLSIHNHGLFGVAWNPRVTAEQRAQFERDTQAQGLDGFHIRQL 315
Query: 160 KS----EPSPIRDEYAPV--MFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPF 213
E + +RD Y PV +F E + D+ S + R + +A +TG+ TRP
Sbjct: 316 NGRNELESADLRDTYYPVQYIFPLEANTRALGFDLASRPDRRAALDQAISTGRPAATRPL 375
Query: 214 RLLGSH--HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQLAGN 271
L+ ++ H G++L PVY+ E+++ G++ G F L N + Q A
Sbjct: 376 TLVQNNGEHEGLILYLPVYR---------EQQL---LGFVSGIFRTIDLF-NQVTQQAQA 422
Query: 272 QAILVNVYDMTNASDP-LIMYGDQNQDGDMSLLHESELDFGDSFRKHKM----ICRYHQK 326
+ + D+T A P LI+ Q G S H + LDFG + + K
Sbjct: 423 LRYGLQLRDITEADQPVLIIAAPQPPLGGFSARHFT-LDFGGRTLEASIYPDQTYLLATK 481
Query: 327 ASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV---RAEAADVAKS 383
T W+ LT F + + + +L G I + + K + LK +A+AAD AKS
Sbjct: 482 DWTSWSILTLGFLITALLQTLLLLLTGTNEQIGR--EVLRKTRSLKKAVKQAQAADQAKS 539
Query: 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443
FLA +SHE+RTP+N + ++ L TDL +Q A++ L++LIN LD +KI
Sbjct: 540 DFLANMSHELRTPLNAVTLLINRCLKTDLDQSQSSLLTNARLAADTLMSLINHTLDYSKI 599
Query: 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIIT 503
A +L LE + F+L+ IL+ + ++FS ++ K + + V +P GDP R QI+
Sbjct: 600 GAGQLTLEHIDFSLQKILEKMTAIFSIQAETKQVAFELDVPHPLPPLFNGDPLRIEQILF 659
Query: 504 NLVGNSVKFTERGHIFVKVHLAERT 528
NL GN++KFT +G + + V+ T
Sbjct: 660 NLCGNALKFTPQGQVTLSVNYVAST 684
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 20/140 (14%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L K +L+V+D +NR +A L+ FGA V A + + AL +L D MDIQMPE
Sbjct: 783 LADKHLLLVEDIAINRELATFLLEDFGAKVTGAENGRHALAQLALHPDIDLVLMDIQMPE 842
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG++AT IRQM N LPI+AMTA+ +++ D CL G
Sbjct: 843 MDGYQATAAIRQMPGHEN--------------------LPIIAMTANAVNSDIDACLAAG 882
Query: 977 MDGYVSKPFEEENLYRELAK 996
M+ +V KP +E L + K
Sbjct: 883 MNDHVGKPIDEAALISTICK 902
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+N +AS V ++V DTGIGI + Q ++F F QADSST+R YGGTG+GL+I K
Sbjct: 678 VNYVASTPAGPQVEIIV--SDTGIGISHNKQAQLFNAFSQADSSTTRQYGGTGLGLAICK 735
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
L +LM G+I+ S+ G+ S T ++ +E P K L ++V+
Sbjct: 736 SLTDLMGGRIAIESQEGTGTRVSVTLPLKPAATATDYPVQVPLAEQ-PLADKHL--LLVE 792
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTS-SEDKFQPDIILVEKDCWISG 768
+ + + + L G V + A+NG + ++ PDI LV D +
Sbjct: 793 DIAINRELATFLLEDFGAKV----------TGAENGRHALAQLALHPDIDLVLMDIQMPE 842
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV 816
D G+ A + GH LP +I + N + D A G D V
Sbjct: 843 MD-GYQATAAIRQMPGHE-NLP-IIAMTANAVNSDIDACLAAGMNDHV 887
>gi|390992031|ref|ZP_10262279.1| sensory box protein [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|372553255|emb|CCF69254.1| sensory box protein [Xanthomonas axonopodis pv. punicae str. LMG 859]
Length = 1364
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 200/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K Q++ E LP V+ E R
Sbjct: 849 GGELEVESLPGRGSEFYFVVTLEKSAPL------QAQRE-LP--------VLPPEAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P+ +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EERPGAR--PSTPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.7 bits (99), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMSHVK---SLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G+ V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRI 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
+ G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PNESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|333983217|ref|YP_004512427.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333807258|gb|AEF99927.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 926
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 188/392 (47%), Gaps = 38/392 (9%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI +F PF QADSST+R YGGTG+GLSI K LV +M G I +R
Sbjct: 439 VSDTGIGISKGVIPNLFQPFSQADSSTTRKYGGTGLGLSICKQLVNMMSGDIEVHARIGE 498
Query: 668 GSTFSFT-AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
G+TF+ +F KE+ + +S G GLK +++ P + Q H G
Sbjct: 499 GTTFTVNLPLFASSKEFKPASLSESA------GLAGLKLLIIQTTPAYPNILQNHCLSWG 552
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
MS D+++ A + L S P D+ ++ D ++ D +L+ P
Sbjct: 553 ----MSVDTADSATIALDMLKKSATTPHPYDLAII--DMPVADMDGLELGRLIISAPG-- 604
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
+ ++P LI+L + KD+ +AG A ++ KP+R + + L L +
Sbjct: 605 LARIP-LIMLPSAPYKDDVAAKRAGITA--LVKKPVRKADLYQSLLNALGASIRLPHSET 661
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+ + L IL+V+DN +N+ VA L FG TV+ A + AL + +
Sbjct: 662 RLDMPATAAAQLSA-HILLVEDNRINQAVAQAMLNSFGCTVDIAENGLEALQAIDR-KAY 719
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MD MP+MDG+E T IR+ ++ N PI+A+TA+ I
Sbjct: 720 DLVLMDCMMPKMDGYETTAEIRRRQNCDNLS-----------------RFPIIALTANAI 762
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
++CL GMD Y++KPFE LY+ ++++
Sbjct: 763 EGDREKCLLAGMDDYLTKPFESAALYKMISRW 794
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 114/154 (74%)
Query: 373 VRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIA 432
V A+AA+ AKSQFLA +SHEIRTPMNG+LGM LLL T L+ Q+ +A+ G++L++
Sbjct: 266 VEAQAANAAKSQFLANMSHEIRTPMNGVLGMTELLLSTSLTPEQKRFAENVHKSGESLLS 325
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
+IN++LD +KIEA L+LE+V F L ++DV+ LFSE++ NK +EL ++ VPE V+
Sbjct: 326 IINDILDFSKIEAGHLKLESVDFCLYQTVEDVIELFSERAYNKHLELNYRIAGDVPENVI 385
Query: 493 GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
GDP R RQI++NL+ N++KFT +G+I V V L +
Sbjct: 386 GDPTRLRQILSNLLSNAIKFTSQGNITVDVGLTD 419
>gi|410633705|ref|ZP_11344345.1| sensory box histidine kinase/response regulator [Glaciecola arctica
BSs20135]
gi|410146365|dbj|GAC21212.1| sensory box histidine kinase/response regulator [Glaciecola arctica
BSs20135]
Length = 1076
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 181/657 (27%), Positives = 274/657 (41%), Gaps = 162/657 (24%)
Query: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI--C 426
QELK A AKS FLA +SHEIRTP+N I G+ L+ + D QI
Sbjct: 419 QELK----QATQAKSDFLARMSHEIRTPINAISGLTKLMQRN--ADNPDDMTNLRQIDEA 472
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+L+ +IN++LD +KIEA KL++ F L + + L + K IEL ++
Sbjct: 473 SCSLLGVINDILDFSKIEAGKLDITTTSFQLDKTVSQAIRLQLISAHQKNIELIQHIARD 532
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP ++ GD R +Q++ NL+ N+VKFT+ G ++V V N TE+
Sbjct: 533 VPLYLQGDGLRIQQVLVNLLSNAVKFTDDGLVYVTVK-----------------NKATEQ 575
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
GV + +T GL ++ F A+G +S + GG
Sbjct: 576 GVLLEFAVK-DTGIGLTQNQMDGLFESF-----AQGDES------ISRRYGG-------- 615
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G+ + Q LVELM G+I S+
Sbjct: 616 ----TGLGLAICKQ------------------------------LVELMGGKIWVESQLG 641
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFK---GLKAVVVDEKPVRAAVTQYHLN 723
G+TF FT +K+ K++ + K LK +V D+ + V +
Sbjct: 642 SGTTFYFTL-----------PLKEEKNQHISSPSKQLSNLKVLVADDINLSRQV----IA 686
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-P 782
+ + + S + D N L + K QP +L+ LDWK P
Sbjct: 687 EILLQANIKSDLADGGQETLNKLRLATAKLQPYDVLI-----------------LDWKMP 729
Query: 783 N----------GHVFKL--PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
+ F L PK+I+L+ +AK G D I KP AS + L
Sbjct: 730 DIDGLQVAAIINQEFSLNKPKIIMLSAFDFSHMQQQAKQLGIKD-FIEKPFSASELINRL 788
Query: 831 QQV---LSTENKR--QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
Q+V L T++ + + VP+ S+ K+IL+ +DN +N+ VA G LK A
Sbjct: 789 QEVAFNLKTDSSPSFKEMKNVPDLST--------KRILLAEDNKLNQKVALGFLKYTKAE 840
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V + ++ + FD MD+QMPEMDG AT +R E K N
Sbjct: 841 VILVENGLEVIEAYKHQGNFDCILMDVQMPEMDGLTATLTLRN-ELKCN----------- 888
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
LPI+AMTA+ ++ + GM +++KP E E Y+ LA+ + P
Sbjct: 889 ---------LPIIAMTANAMNQDLQKSSAAGMTAHITKPIEPEYFYQVLAEILLASP 936
>gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf. saccharolyticum
K10]
Length = 885
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 198/417 (47%), Gaps = 57/417 (13%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S V L V DTG GI E++FMPF Q S YGGTG+GLSIS+ ELM G+
Sbjct: 509 STTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGR 568
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
++ S+ GSTF+ T FG+ ++ + ++ + D F L+ + VD+ P
Sbjct: 569 LTVSSQVGKGSTFTLTMPFGRVEKRESRESRERRETD----FSHLRVLAVDDDPDCLTHI 624
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ L +LG + S ++A A+ ++ ED ++ L
Sbjct: 625 KLLLKKLGAKADTAMSCEEAVEKARLAYSAGED---------------------YDVCLA 663
Query: 779 DWK-PNG-------HVFKLPKLIL---LATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
DWK P+G + KLP + L T DE + A V+ KPL S ++
Sbjct: 664 DWKMPSGDGVETIRRLRKLPGRKIAAALVTAYDTDEIRRDAELAGAACVVEKPLFESTLS 723
Query: 828 ACLQQVLSTENKRQAGRGVPNGS-SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
A L ++L + + + + S S +G G + L+V+DN +NR +A FGA V
Sbjct: 724 ALLTKLLKEKQQEKQEEKIAQKSQSLPEGNFGGLRFLIVEDNDLNREIAVTLFSSFGAEV 783
Query: 887 ECAASAKAALDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
E A + K A++ ++ P FD MD+QMP MDG+EATR IR ++
Sbjct: 784 ETAVNGKEAVEAFEASEPGFFDLILMDVQMPVMDGYEATRIIRSLD-------------- 829
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ D +PILAMTA+ + + CGMDG++SKP + + + ++ + K +
Sbjct: 830 ----REDGREIPILAMTANAFSEDKAKSMACGMDGHISKPIDLKEVVEKIERVLKKR 882
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGM-LALLLDTDLSSTQRDYAQTAQICGKALIA 432
+AE A+ AKS+FL+ +SHEIRTPMNGI+GM + + + SS D + + + L+
Sbjct: 352 QAEKANRAKSEFLSRMSHEIRTPMNGIIGMGMIAMQNLGDSSRVEDCIRKINLSSRHLLT 411
Query: 433 LINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVL 492
LINEVLD +KIE+ ++E++ +F+ R L+ V ++ S ++R+KG+ V + E +
Sbjct: 412 LINEVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFDVIFLGDMEEELF 471
Query: 493 GDPGRFRQIITNLVGNSVKFT-ERGHIFVKV 522
GD R QI+ NL+ N++KFT E G I +++
Sbjct: 472 GDALRVNQILMNLLSNALKFTPEGGSIVLRI 502
>gi|381151696|ref|ZP_09863565.1| PAS domain S-box [Methylomicrobium album BG8]
gi|380883668|gb|EIC29545.1| PAS domain S-box [Methylomicrobium album BG8]
Length = 1176
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 200/417 (47%), Gaps = 57/417 (13%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ ++A +D L V ++DTGIG+ Q +F PF QAD+ST+R +GGTG+GLSISK
Sbjct: 674 VKVLAQASAGDDSALRVEIKDTGIGMSPEGQTLLFQPFAQADNSTARRFGGTGLGLSISK 733
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
L++LM+G I S G+ F FT + + G +A+VVD
Sbjct: 734 NLIDLMKGNIGVESVQGKGTCFWFTLPLQPVDNHAAPSLTD---------LSGKRALVVD 784
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+ + +Y+L G+ V + + A + + +E DI+L D +
Sbjct: 785 DNDTNRKILRYYLQHWGMRVSEADNAPAALTELQTAALKNEAY---DILL--SDLHMPDM 839
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR------- 822
D A+ + P+ + P+L+L + + E D+ A GFA + ++KP+R
Sbjct: 840 DGYALARAIATFPS--IAATPRLLLSSGGMGS-EADRL-ALGFAQS-LLKPVRQAQLLEA 894
Query: 823 -ASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
AS + A L++ LS + +P+ S K+ILVV+DN VN+ V L K
Sbjct: 895 IASALHAPLRKTLS---PIKIAEELPDYGS--------KQILVVEDNKVNQKVILAMLGK 943
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
F T + A + + ALDKL + +D FMD QMP MDG+EA R +R ES
Sbjct: 944 FRCTPDLAENGREALDKL-AQKTYDLVFMDCQMPVMDGYEAARLLRNRESPL-------- 994
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ P++A+TA ++CL GMD ++SKP + L LA++
Sbjct: 995 ----------PVKTPVVALTAHAAAGEREKCLAAGMDDFLSKPIVRQELAEALARWL 1041
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 144/238 (60%), Gaps = 10/238 (4%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
H +++ + AE A K++FLA +SHEIRTPMNG+LGML +L DTD+S QRD +TA
Sbjct: 520 HSLEKARNAAEEAAKTKAEFLANMSHEIRTPMNGVLGMLDILKDTDMSYEQRDLLETAAN 579
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
++L+A+IN++LD +K+EA K ELE + FNL A+++++ +L S ++ K +EL F+
Sbjct: 580 SAESLLAIINDILDFSKLEAGKCELEQIEFNLPALVEEICALMSVRAHAKELELNCFLPP 639
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTE 545
+P LGDP R RQ++ NLVGN+VKFTERG + VKV + + A D++ L +
Sbjct: 640 TLPARWLGDPNRIRQVLVNLVGNAVKFTERGEVSVKV------LAQASAGDDSALRVEIK 693
Query: 546 E-GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDV 602
+ G+ S GQ AD + +F G + ++I++M N G E V
Sbjct: 694 DTGIGMSPEGQTLLFQPFAQADNSTA-RRFGG--TGLGLSISKNLIDLMKGNIGVESV 748
>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
Length = 831
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 121/180 (67%), Gaps = 10/180 (5%)
Query: 366 HKMQEL-----KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
H+++EL K AEAA AK +FLA +SHEIRTPMNGILGM LLLD+ L+ QRDY
Sbjct: 151 HRLRELELLQAKEAAEAASRAKGEFLANMSHEIRTPMNGILGMTDLLLDSALAPEQRDYL 210
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
QT + +AL+ L+N++LD ++IEA +L LE + F++ ++ + L + ++ KG+EL
Sbjct: 211 QTVKSSAEALLTLLNDILDFSRIEAGRLSLEEIDFSISGLVAETLRTLALRAHQKGVELF 270
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
V+ VP + GDP R RQ++TNLVGN++KFTERG I + V T+V TD + TLL
Sbjct: 271 FDVAPDVPAVLKGDPARIRQVLTNLVGNAIKFTERGEIELDV-----TVVDTDDRHATLL 325
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 183/397 (46%), Gaps = 40/397 (10%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TL+V V DTGIGIP E +F F QAD+ST+R YGGTG+GL+I K LVELM G++
Sbjct: 323 TLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTRKYGGTGLGLAICKHLVELMGGELRVQ 382
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
S GS FSF+ + V LP +G +A+V P L
Sbjct: 383 STLGEGSRFSFSLRLARVASPV---------PRLPEVLRGARALVAVTNPAFGERLAAQL 433
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
R G +V + ++ + A S+ F D +L++ D G GF L +
Sbjct: 434 VRAG-LVPVLAADGAGALAALAAAASANAPF--DFVLMDADMPAPG---GFA---LAERF 484
Query: 783 NGHVFKLPKLIL-LATNISKDECDKAKAGGFADTVIMKPLRAS------MIAACLQQVLS 835
L +++L L ++ + + + + G + + KP A IA +S
Sbjct: 485 QEAAPALDRIVLMLPSHTQRADLVRCQQLGL-QSRLAKPFAAEDLYEALRIARVGSGAMS 543
Query: 836 TEN--KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
E+ R + + R IL+V+DN VN+ VA+ L++ G V +
Sbjct: 544 EESLLAFDPQRTLTERLRAERAPERRLDILLVEDNPVNQTVASRMLERVGHKVTVVNNGA 603
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A++ + H FD MD+QMP M G EAT+ IR E++ + + G +V
Sbjct: 604 EAIEAFDAGH-FDLVLMDLQMPVMGGIEATQAIRAREARRSWAVQGGWRAV--------- 653
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
PI+AMTA + + CL+ GMD YV+KP +L
Sbjct: 654 --PIVAMTAHAMESDRARCLEAGMDDYVAKPIRAGDL 688
>gi|373456904|ref|ZP_09548671.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371718568|gb|EHO40339.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 805
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 142/440 (32%), Positives = 209/440 (47%), Gaps = 67/440 (15%)
Query: 584 QSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643
Q IN+ + V L V+DTGIGI ++F F QADSST+R YGGTG+
Sbjct: 416 QKGEVFINVGRIAQDGDTVELQFSVKDTGIGIAEDKINKLFDAFTQADSSTTRKYGGTGL 475
Query: 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP------ 697
GL+ISK LVE+M G+I S+ GSTF FT IK + LP
Sbjct: 476 GLAISKRLVEMMGGRIWVTSKVGKGSTFYFT-------------IKAKAASSLPKKYLNI 522
Query: 698 --PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP 755
P G+ +VVD+ + + R G+ V+ +++ ++A KNG + D
Sbjct: 523 KIPELTGVHVLVVDDNKTNRRILKLQCQRWGMKVQEAATAREALEIMKNG--TEFDLAIL 580
Query: 756 DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADT 815
D+ + E D G + + L K +LP LI+L++ + K K KA F D
Sbjct: 581 DMQMPEMD----GVELAAEIRKLYSKE-----ELP-LIMLSS-LGKPPKLKEKAEMF-DA 628
Query: 816 VIMKPLRASMIAACLQQVL----STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN 871
++ KP++ S + L + L S + K A + + + LR IL+ +DN +N
Sbjct: 629 LLTKPVKQSQLYNTLLEALNRKPSVQEKWSASEATLDETFARKYPLR---ILLAEDNSIN 685
Query: 872 RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931
+ + L K G T + AA+ L+ L+ +D FMD+QMPEMDG EATR+I Q
Sbjct: 686 QKLGLKVLAKMGYTADLAANGLEVLEALKQQR-YDLIFMDVQMPEMDGLEATRQIIQ-NF 743
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
NE+ + I+AMTA+ + ++CL GMD YVSKP + E +
Sbjct: 744 PENERPV------------------IIAMTANAMKGDREKCLNAGMDDYVSKPIDLEEIQ 785
Query: 992 RELAKF-----FKSKPLSGA 1006
+A + K K SGA
Sbjct: 786 AVIAAWGEKILKKKKATSGA 805
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 129/197 (65%), Gaps = 3/197 (1%)
Query: 328 STPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVR--AEAADVAKSQF 385
+ P L + L VI LL G I+ AI + ++ + + +K R AEAAD+AKS F
Sbjct: 229 TLPSVPLHLNYPLIVIHLLFG-IIGTLAIVFFGIFNERKQRELIKAREAAEAADIAKSDF 287
Query: 386 LATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
LA++SHEIRTPMNG++GM +LL+ T L+ QR+Y QT +I ++L+ +IN++LD +KIE+
Sbjct: 288 LASMSHEIRTPMNGVMGMSSLLMQTPLTPEQREYVQTIRISAESLLTIINDILDFSKIES 347
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
K++LE F L+ +++ L L + K+ K ++L F+ VP ++ D R RQ++ NL
Sbjct: 348 GKMDLEFQPFELKTCIEEALDLVAPKAAEKNLDLVYFIEPDVPTYIESDITRLRQVLVNL 407
Query: 506 VGNSVKFTERGHIFVKV 522
+ N+VKFT++G +F+ V
Sbjct: 408 INNAVKFTQKGEVFINV 424
>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 1042
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 115/159 (72%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
M+E ++ AEAA+ AKS+FLA +SHEIRTP+NG++GM L L+T++S QR+Y T +
Sbjct: 381 MEEARITAEAANRAKSEFLANMSHEIRTPLNGVIGMTDLALETEMSREQREYMTTVKFSA 440
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+L+ +IN++LD +KIEA K++LE + F++R ++ L + ++ KG+EL VS +
Sbjct: 441 DSLLTVINDILDFSKIEAGKVDLETISFDIRECVETTLKTLALRADEKGLELLCDVSADL 500
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
PE VLGDPGR RQI+ NLVGN++KFT G + ++V LA+
Sbjct: 501 PEVVLGDPGRLRQIVVNLVGNAIKFTGSGEVSLRVGLAD 539
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 184/396 (46%), Gaps = 34/396 (8%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI E VF F QAD+ST+R YGGTG+GL+IS+ LVELM G+I S P
Sbjct: 551 VSDTGIGISPEKLESVFASFSQADTSTTRQYGGTGLGLTISRRLVELMGGRIWCESTPGK 610
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F FT + + P G+K ++VD+ + + L G+
Sbjct: 611 GSQFHFTVSLPPVTDATAPVVVPKPL----PLLAGVKVLIVDDNKTNRRILEGLLRIWGM 666
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
V + TA L ++ + P +L+ D + D Q + +
Sbjct: 667 EVASAPE----GDTALAMLHAAGLEGSPYRLLL-TDMHMPKMDGFMVVQQMKQDTS---L 718
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
LP +++L++ + ++ + G + ++KP+R + + + L + + +
Sbjct: 719 ALPTVMMLSSGGHHGDANRCEQLGIS-AYLLKPVRRQELQDAIARALGSSMDGIKDKSLI 777
Query: 848 NGSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
S+ L +R IL+ +DN VN+ +A L+K G +V A + + A++ +S +
Sbjct: 778 TQSTLVADLPAVRSLHILLAEDNEVNQKLAVRLLQKRGHSVVVANNGREAVEASES-RKY 836
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MD+QMPEMDG +AT IR E+ G+ R L I+AMTA V+
Sbjct: 837 DLVLMDVQMPEMDGIQATIAIRAREA--------------GSGAR----LAIVAMTALVM 878
Query: 966 HATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ C+ MDGY+SKP + L L + K
Sbjct: 879 KGDRERCMAADMDGYLSKPIRPQELDAVLETYTARK 914
>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
Length = 951
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 110/155 (70%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
KV AE+A++AKSQFLA +SHEIRTPMNGI G L LL ++LS QR++ + A+ L+
Sbjct: 317 KVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNLSLEQREFVREAKSASDILL 376
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA+KL LE + FNLR +++D +SLF K+ KGI+L + +P+ V
Sbjct: 377 NIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVPKTLEKGIQLYTIIDPTIPDEV 436
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+GDP R +QI+ NL+ N VKFT+ G I +KV E
Sbjct: 437 IGDPSRLKQILNNLLSNGVKFTDAGEIAIKVDYFE 471
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 182/378 (48%), Gaps = 38/378 (10%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI +++F F QAD+ST+R YGGTG+GLSI + LV +M G+I+ S
Sbjct: 483 VRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGEITVDSVLDK 542
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF F K + S+ + + ++VD +T +L G+
Sbjct: 543 GSTFRFCVRLKISK-------RASEHISIFEKVNDVNILIVDNDENSRKITSSYLKGTGL 595
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
+ +A ST +++++ K + I+++E C I G + A+ L P +
Sbjct: 596 HIIEVDGAGEAISTI---ISNNDTKNKISIVIIE--CEIPGMNCYELARTLKNIP---IA 647
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
K KLILL + K + A GF+ + + KPL+ + C+ L + + +
Sbjct: 648 KNIKLILLMSRY-KGDFKAAMEYGFS-SYLTKPLKRDDLLDCIAVNLGLKKEDEEHFEDS 705
Query: 848 NGSSFHQGL-LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFD 906
N + L +IL+ +DN VNR + LK G T + A K AL K+ S +D
Sbjct: 706 NKNVVKNIYNLSEIRILLAEDNEVNRKIFISMLKSRGITCDVALDGKEALRKV-SEEDYD 764
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
FMD QMP MDG+EAT IR++E + H I+A+TA+ +
Sbjct: 765 IVFMDCQMPVMDGYEATAEIRRIE-------------------ENRKHTKIVAVTANAME 805
Query: 967 ATFDECLKCGMDGYVSKP 984
++C+K GMD Y++KP
Sbjct: 806 GDSEKCIKSGMDNYITKP 823
>gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri
str. 306]
gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 1364
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 199/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K Q++ E LP V+ E R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAPL------QAQRE-LP--------VLPPEAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EERPGAR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 43.1 bits (100), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMSHVK---SLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G+ V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRI 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
+ G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PNESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|418518149|ref|ZP_13084301.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410704844|gb|EKQ63324.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 1364
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 199/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K Q++ E LP V+ E R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAPL------QAQRE-LP--------VLPPEAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EERPGAR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMSHVK---SLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G+ V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRI 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
+ G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PNESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|418522922|ref|ZP_13088950.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410700534|gb|EKQ59084.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 1364
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 199/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K Q++ E LP V+ E R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAPL------QAQRE-LP--------VLPPEAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EERPGAR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 204 TGKAVLTRPFRLLG---SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260
+G+ V+T P L G + G ++ VY+ +P T ++R+ AT+G++ PF VE +
Sbjct: 185 SGEPVMTSPISLSGYRIPNESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQM 243
Query: 261 VENLLGQ 267
V + LG+
Sbjct: 244 VRSALGE 250
>gi|423199297|ref|ZP_17185880.1| hypothetical protein HMPREF1171_03912 [Aeromonas hydrophila SSU]
gi|404629292|gb|EKB26053.1| hypothetical protein HMPREF1171_03912 [Aeromonas hydrophila SSU]
Length = 886
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 202/419 (48%), Gaps = 77/419 (18%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
++V L V+DTGIG+ Q+R+F F QADSST+R YGGTG+GL+I + L LM G++
Sbjct: 306 QEVLLHCSVQDTGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAICRKLAGLMGGEV 365
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S P GSTF FTA G+ + + S DL +G + +V D+ +
Sbjct: 366 GVQSEPGQGSTFWFTARLGRGRRRS----RYLPSLDL----RGRRMLVADDSASARTI-- 415
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L +++ S + D + + + L D Q + + + LLD
Sbjct: 416 -----LAALLRGMSFVVDTAESGQQALQMIADAEQ--------------QGTPYEVVLLD 456
Query: 780 WKPNG--HVFKLPKLI----------LLATNISKDEC-DKAKAGGFADTVIMKPLRASMI 826
W+ G + +LI ++ T ++E +A A GF D V++KP+ AS++
Sbjct: 457 WRMPGLDGIETGRRLIARGAGRRPYRVMVTGYGREEIFREADAAGF-DRVLVKPVCASVL 515
Query: 827 AACL-----QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
+ QQ + K QA H G +IL+ +DN +N+ VA L+
Sbjct: 516 FDTVIGLFGQQAATLSFKHQAT---------HHYRFDGLQILLAEDNELNQQVALELLQA 566
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
GA V A++ ALD + + +D MD+QMP MDG ATR++RQ E
Sbjct: 567 VGAKVSVASNGAIALD-MATKAPYDLILMDMQMPVMDGLAATRQLRQQE----------- 614
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
GT + H+PILAMTA+V+ + CL GMD +++KP + + LY L ++ S
Sbjct: 615 ----GTGQ----HIPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDKLYDVLQRWATS 665
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 99/153 (64%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE+A AKS+FLA +SHEIRTPMN ILGM L L T L Q DY Q + L+ +I
Sbjct: 151 AESATRAKSEFLANMSHEIRTPMNAILGMSHLALQTRLDPQQLDYVSKIQRAAQHLLGII 210
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL+LE + F+L +L+++ +L EK+ KGIEL V ++ + GD
Sbjct: 211 NDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 270
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
P R QI+ N N+VKFTE+G I VKV E+
Sbjct: 271 PLRLGQILINYANNAVKFTEQGEILVKVRCLEK 303
>gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 1364
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 197/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K P + L A+ + P R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAP--------------PQAQRELPALPPEAMP-RV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EQRPGTR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G+ V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRV 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PSESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
Length = 1362
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 351 LYGAAIHIVKVEDDFHK-MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
L+ A IH + VE + +++ K AEAA AKS FLAT+SHEIRTPMN ++GM LLLD
Sbjct: 657 LFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELLLD 716
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
TDL+STQR+Y Q G++L+++IN++LD +KIEA + +LE F+LR L D + +
Sbjct: 717 TDLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTMRSLA 776
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
++ +K +ELA + VP+ ++GD R RQII NLVGN++KFTE G I + V+
Sbjct: 777 VRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEGEIVLDVN 830
Score = 153 bits (387), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 183/391 (46%), Gaps = 35/391 (8%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
++ L V DTGIGIP Q+++F F Q D S +R + GTG+GL+I+ L+E+M G+I
Sbjct: 838 ELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEMMGGKIW 897
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GS F FTA F +E V + K+E GL+ ++VD+ + +
Sbjct: 898 VNSEVGKGSEFHFTARFELTEEEVPANEPLLKAE-----LDGLRVLIVDDNLTNCQILE- 951
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
LG + SI S S + K D++LV+ + + S A D
Sbjct: 952 --EMLGSWNMQTQSINRGSDALDVMHASQQSKHPFDLVLVDANMPVMDGFSVAKAIKQDS 1009
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
V ++++ ++ + E + K G A +I KPL+ S + + + L
Sbjct: 1010 TLGSAV-----IMMITSSDRQGEISRCKELGIAAHLI-KPLKQSELFNSIAETLGMNGTP 1063
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
Q + + KIL+ +D+ VN+ +A LK G + + A+++ +
Sbjct: 1064 QHDMRTATADLAQR--IPPLKILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVNERK 1121
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+ FD MD+QMPEMDG EATR+IR+ E + E H+PI+AM
Sbjct: 1122 NRE-FDLILMDVQMPEMDGLEATRQIREYEQETGE------------------HVPIIAM 1162
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLY 991
TA + + CL+ GMDGYVSKP L+
Sbjct: 1163 TAHAMKGDRERCLEAGMDGYVSKPVRVRELF 1193
>gi|345873017|ref|ZP_08824939.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343917667|gb|EGV28457.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1066
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/405 (30%), Positives = 195/405 (48%), Gaps = 47/405 (11%)
Query: 599 SED---VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
SED VTL V VEDTGIG+ +RVF F+QAD ST+R YGGTG+GL IS+ L+E+M
Sbjct: 475 SEDADGVTLHVAVEDTGIGMTSEQMDRVFGEFIQADGSTTRQYGGTGLGLVISQRLIEMM 534
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G I S P GSTF+F F + ++ + P L+ +VVD+ P
Sbjct: 535 GGHIEVSSTPGQGSTFAFELTFARAP-------GDTRPQSHLPAITNLRTLVVDDYPESR 587
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
V + + LGI ++ + S+ + S+D +IL D + G D G
Sbjct: 588 TVLRGLMESLGIQ-RVDDCVDGPSALERITAAWSQDDPYELLIL---DWLMPGMDGGDVL 643
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDEC-DKAKAGGFADTVIMKPLRASMIAACLQQVL 834
+ L + P+ L+ + ++A+ G +D I KP+ ++ L+Q+
Sbjct: 644 RRLSERQ----IPPPRFTLVVSAYDLGGLRERAEQLGASD-FITKPVMPRVLCERLRQL- 697
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
T+ +P S + G ++L+++DN +N+ +A ++ G VE A
Sbjct: 698 -TDGDEPDEIWLPMTSLMS---MTGMRVLLIEDNPLNQQLAVALMQTQGIEVEVADQGME 753
Query: 895 ALDKL--QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A++ L ++P FD MD+QMP +DG++ T R+R A
Sbjct: 754 AIECLDAKAPDHFDLVLMDLQMPVLDGYQTTTRLR--------------------ADPRY 793
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+ LPI+AMTA + + L GM GY++KPF+ LY LA++
Sbjct: 794 VDLPIIAMTAHAMPEERERGLGLGMQGYLAKPFDPRELYAILARY 838
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 6/158 (3%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
H ++ K AEAA +AKS+FLA +SHEIRTPMN ++GML L L T L+ QRDY A+
Sbjct: 311 HALESAKKHAEAATLAKSRFLANMSHEIRTPMNAVIGMLYLALGTPLTPQQRDYLTKARG 370
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL-----A 480
K+L+ ++N++LD +KIEA +LEL+ L ++ + L L ++++ K IEL
Sbjct: 371 AAKSLLGILNDILDSSKIEAGRLELDLGPLQLEQVIGEALLLVQQRAQEKQIELLFDARG 430
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
++ + E + GD R RQ++TNL+ N+VKFT GH+
Sbjct: 431 LWTIRQGGELI-GDSLRLRQVLTNLLSNAVKFTHSGHV 467
>gi|381172550|ref|ZP_09881675.1| sensory box protein [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380686968|emb|CCG38162.1| sensory box protein [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 1364
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 199/411 (48%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K Q++ E LP V+ E R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAPL------QAQRE-LP--------VLPPEAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EERPGAR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMSHVK---SLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G+ V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRI 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
+ G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PNESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 1431
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 124/184 (67%), Gaps = 2/184 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G + GY+ G A I ++ ++ K AEAA+VAKS+FLA +SHEIRTP+NG+LGM
Sbjct: 732 GRITGYL--GIATDITPLKLTAQELVSAKEAAEAANVAKSRFLANMSHEIRTPLNGVLGM 789
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
LLL T LS+ Q+ +T + G AL+ +IN++LD +KIEA KLELE V F LR ++++
Sbjct: 790 TELLLSTSLSAKQQSLLETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEE 849
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
+ LF+ + NK +EL F+ VP+ ++GD R RQI+ NL+GN++KFT +G + V
Sbjct: 850 AVELFAGSAGNKKLELTYFIPADVPDSLVGDAVRLRQILLNLIGNAIKFTAQGEVTVAFA 909
Query: 524 LAER 527
LAE+
Sbjct: 910 LAEQ 913
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 196/411 (47%), Gaps = 49/411 (11%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++ +TL V DTGIGIP +AQ ++F F QAD ST+R +GGTG+GL+I K LV+LM G+
Sbjct: 915 ADTLTLACRVRDTGIGIPDAAQAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGE 974
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP----GFKGLKAVVVDEKPVR 714
+ VS P G+TFSFT + + PP G + ++VD+
Sbjct: 975 VGLVSAPGQGTTFSFTFTVTRGSAHAA----------YPPLAERHLAGRQILIVDDMRTN 1024
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774
+ HL G V + S DA ++ + Q D+ ++ D + G D
Sbjct: 1025 LEILATHLQSWGATVFTAESADDALLQLEH---FRHKQQQIDMAIL--DLRMPGRDGVDL 1079
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
A+ + K LP + L + DE D + + KP+R S++ CL + L
Sbjct: 1080 ARSI--KEQAAYQNLPLIALSSVERLSDESDVTHR--LFHSFLRKPVRQSLLRDCLTRAL 1135
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGALKKFGATVECAAS 891
AG VP+ F R + +IL+ +DN VN+ VA+ L+ G + A +
Sbjct: 1136 GGS----AG-PVPHSPEF-AATPRPRVDARILLAEDNPVNQDVASSMLEMLGCRITIAPN 1189
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+AA++ + FD MD QMPEMDGF AT IR+ E+ A D
Sbjct: 1190 GRAAVEAATTGR-FDLILMDCQMPEMDGFTATAAIRRQEATAT----------------D 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
H+PI+A+TA+ + CL GMD Y++KPF LY L ++ +P
Sbjct: 1233 RRHVPIIALTANAMEGDRARCLAAGMDDYLTKPFTVAQLYAFLTQWLTPRP 1283
>gi|346725360|ref|YP_004852029.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346650107|gb|AEO42731.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 1364
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 197/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K P + L A+ + P R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAP--------------PQAQRELPALPPEAMP-RV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EQRPGTR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G+ V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRV 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PSESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118]
gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118]
Length = 1364
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 197/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ LVELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K P + L A+ + P R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAP--------------PQAQRELPALPPEAMP-RV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+L +R R P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLL---EQRPGTR--PATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMSHVK---SLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S +D+ S R L+A +G+ V+T P L G
Sbjct: 142 LAPWDGERYMVLYFEPESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRV 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
G ++ VY+ +P T ++R+ AT+G++ PF VE +V + LG+
Sbjct: 202 PSESGFLVLLAVYREGMP-LQTPQQRMLATSGWVYAPFSVEQMVRSALGE 250
>gi|428221149|ref|YP_007105319.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427994489|gb|AFY73184.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1257
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 191/400 (47%), Gaps = 52/400 (13%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D + ++DTGIGI R+F PF QADSS +R YGGTG+GL ISK L E+M G ++
Sbjct: 776 DCLVQFKIKDTGIGIKDEQIGRLFQPFAQADSSITRRYGGTGLGLVISKRLCEMMGGTLT 835
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S+ VGSTFSFT C D+ ++ ED KG + ++VD+ +
Sbjct: 836 VNSQIGVGSTFSFTIPVA-CG----HDLPETILED---DLKGKRILIVDDNATNRHILTI 887
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE-KDCWISGEDSGFNAQLLD 779
L G++V+ ++ + L E D+ +++ K I+G + Q
Sbjct: 888 QLQGWGMLVQ-------SAGLGREALDILEIDPNFDLAILDLKMPEINGAELAIALQ--- 937
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
GH F I+L T++ +A A + KP+++S + L ++ S
Sbjct: 938 --EKGHTFP----IILLTSLDYHRKIEAAAATLS-----KPVKSSQLLKTLLRIFSLHGS 986
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
P S GL + +IL+V+DN +N+ VA L++FG A + K A+ +
Sbjct: 987 EVTEISHPQVS----GLTKPLQILLVEDNAINQKVAVAMLERFGYNPAIAGNGKEAI-VM 1041
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
FD FMDI MPEMDG ATR IR S+ + + NG G R I+A
Sbjct: 1042 TEQQRFDLIFMDIHMPEMDGLTATRIIR---SQDLQNIKNG----RGNRPR------IVA 1088
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
MTA+V EC + GMD Y+SKP L ELAK +
Sbjct: 1089 MTANVFQEAIAECFEAGMDDYISKPV----LTEELAKVIE 1124
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 105/148 (70%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S+FLA +SHEIRTPMN ++GM LLLDT L++ QR++ +T ++ G AL+ +IN++LD +K
Sbjct: 628 SEFLAMMSHEIRTPMNAVIGMTGLLLDTQLNNEQRNFVETIRMGGDALLNVINDILDFSK 687
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
IEA ++ELE F+++A ++++L LF+ K K IELA + K+P + GD GR RQI+
Sbjct: 688 IEANRMELEIEPFSIQACVEEILDLFAPKITEKKIELAALIDPKLPSVINGDAGRLRQIL 747
Query: 503 TNLVGNSVKFTERGHIFVKVHLAERTMV 530
NLV N +KFTE+G + + V E + V
Sbjct: 748 INLVSNGIKFTEKGEVTIVVTYIENSAV 775
>gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
Length = 1444
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 201/413 (48%), Gaps = 48/413 (11%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V L V DTGIGI + R+F F QAD+ST+R +GGTG+GL+ISK L ELM G +
Sbjct: 862 EVVLYFAVRDTGIGITPEQKARLFQSFEQADTSTTRKFGGTGLGLAISKKLAELMDGAVG 921
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTF FTA G E D K S DL +G + +VVD+ AV
Sbjct: 922 VESEYGKGSTFWFTARMGVGVE---RDRKLLPSPDL----RGCRVLVVDDNDNARAVL-- 972
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW----ISGEDSGFNAQ 776
+ L M S + + +++ ++LV+ W + G D+ + +
Sbjct: 973 -CDLLTSMTFEPSEVASGPAAVAEVKRAADAGIPYALVLVD---WRMPDMDGIDTARHIR 1028
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
L V + P+L+++ ++ ++ G D V++KPL AS++ + ++
Sbjct: 1029 AL------GVEQAPRLLMVTAYGREEVLNQINEAGI-DDVLIKPLSASILFDTVMRMFGG 1081
Query: 837 ENKRQAGRGVPNGSSF---HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
++G GS ++G +IL+V+DN +N+ VAA L G V+ A
Sbjct: 1082 GRNGESGADDQGGSPAPLDDLAAIQGARILLVEDNDLNQEVAAELLADAGFVVDIADDGA 1141
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
ALDK+Q + +D MD+QMP MDG ATR IR++ + D+
Sbjct: 1142 IALDKVQR-NTYDIVLMDMQMPVMDGVTATREIRKL------------------GRFDD- 1181
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
LPI+AMTA+ + D C GM+ +V+KP + + L+ L ++ K + S A
Sbjct: 1182 -LPIVAMTANAMRRDQDLCRDAGMNDFVAKPIDPDQLWAALVRWIKPRHGSAA 1233
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 3/174 (1%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+ + E + + +EL AE A KS FLA +SHEIRTPMN I+GM L L T L+ Q
Sbjct: 692 VKQAEAELTRAKEL---AEDATRMKSDFLANMSHEIRTPMNAIIGMSHLTLKTPLTPRQH 748
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
DY + Q G+ L+ +IN++LD +KIEA KL +E + F+L +LD++ SL +EK+ K +
Sbjct: 749 DYVKKIQGAGQHLLGIINDILDFSKIEAGKLTVEHIGFDLDKVLDNIASLLTEKTNAKNL 808
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531
EL V VP ++GD R QI+ N N+VKFTE+G I + V + ERT +
Sbjct: 809 ELVFDVPSDVPRALVGDSLRLGQILINYANNAVKFTEKGEIDIIVRVQERTQTE 862
>gi|395009774|ref|ZP_10393251.1| signal transduction histidine kinase [Acidovorax sp. CF316]
gi|394312173|gb|EJE49382.1| signal transduction histidine kinase [Acidovorax sp. CF316]
Length = 1007
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 186/412 (45%), Gaps = 72/412 (17%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V+DTGIG+ Q R+F F QAD+ST+R YGGTG+GL+ISK L LM G++ S P +
Sbjct: 425 VQDTGIGLTPEQQSRLFRSFEQADTSTTRKYGGTGLGLAISKKLAGLMGGEVGVDSTPGL 484
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GS F FTA G S LP P +G + +VVD+ Q G
Sbjct: 485 GSRFWFTARVGLGTP--------SARPLLPEPDLRGRRVLVVDDS------EQARQILAG 530
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK-PNGH 785
++ MS ++ A+S SE W LDWK P+
Sbjct: 531 LLASMSFAVTTAAS-------GSEAIAAARDADAAGAPW--------EIAFLDWKMPDMD 575
Query: 786 ---------VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ P + ++ T +++ +A ++ KP+ S + + L
Sbjct: 576 GVQTAAQLALLPHPPVPVIVTAHGREDVFRALEQAGIRLMLTKPVSPSQLFDTAIRALGG 635
Query: 837 EN-----KRQAGR--GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
R A R P+ + H G ++L+VDDN +N+ V A L G VE A
Sbjct: 636 VQDTGLADRAAARRTSAPDLAPIH-----GARVLLVDDNDLNQQVGADLLGDAGLVVEVA 690
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ + ALD L +D MD+QMP MDG ATRR+R+ + A
Sbjct: 691 ENGQVALDMLHQRAPYDIVLMDMQMPVMDGLTATRRLRENPAWAG--------------- 735
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LP+LAMTA+ + + D CL GM+G+V+KP + + L+ +L ++ ++
Sbjct: 736 -----LPVLAMTANAMSSDRDSCLAAGMNGHVAKPIDPDELFSQLLQWVPAR 782
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 103/156 (66%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ RAE A KS FLA +SHEIRTPMN ++GM L L TDLS QR+Y + Q G+ L+
Sbjct: 259 RARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALTTDLSPRQRNYVEKIQRSGQHLL 318
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LIN++LD +KIEA KLE+E V F+LR +LD+V +L +K KG+EL V +P+ +
Sbjct: 319 GLINDILDFSKIEAGKLEVETVDFDLRGVLDNVANLIGDKCSAKGLELMFDVDPALPDDL 378
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GDP R QI+ N N+VKFT+ G I V+V +R
Sbjct: 379 RGDPLRLGQILVNYGNNAVKFTDTGEIVVRVTTLQR 414
>gi|388257542|ref|ZP_10134721.1| putative sensor/response protein [Cellvibrio sp. BR]
gi|387938709|gb|EIK45261.1| putative sensor/response protein [Cellvibrio sp. BR]
Length = 902
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 199/412 (48%), Gaps = 52/412 (12%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++ + L V DTGIGI ++F F QADSS SR YGGTG+GL+IS+ L+E+M GQ
Sbjct: 407 ADQLQLRFAVRDTGIGISPEQSAKLFQSFTQADSSMSRKYGGTGLGLAISQRLIEMMGGQ 466
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S+P GS F F + + I + + P K L+ +VVD+ V +
Sbjct: 467 IQLESQPGEGSRFYFDLLLA-------QHINTEAAPEFQP-LKPLRTLVVDDNEVNRDIL 518
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L GI ++ S +A + L + + K L+ D + ++G LL
Sbjct: 519 DDWLRAWGITPVLAESAVEALA-----LLNKQAKTDAPFELLLTDWAMPDMNAG---ALL 570
Query: 779 DWKPNGHVFK-LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
D +F+ L ++L I+ E +A ++ KP R + + + QV + +
Sbjct: 571 DNLAASPIFESLAVIVLCPAGIAIQESLANRA-----LMLFKPARQTELHGLIAQVAAGD 625
Query: 838 NKRQ---AGRGVPNGSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
Q + V G+ G+ LRG ++L+ +DN VN+ VA L++ G + A +
Sbjct: 626 FIYQPLGSESLVSEGAKPMPGVKPLRG-RVLLAEDNPVNQEVAKAMLQRMGLDMTIANNG 684
Query: 893 KAAL---DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ AL D+L FD MD QMP MDGFEA+RRIRQ EQ M
Sbjct: 685 QEALALIDRL----SFDLVLMDCQMPVMDGFEASRRIRQ-----REQTMGLNP------- 728
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LPI+A+TA+ I + CL GMD Y+SKPF + L + L+++ K
Sbjct: 729 -----LPIIALTANAISGDREHCLAQGMDDYLSKPFSQLQLNQTLSRWLPEK 775
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q + +AEAA AKS FLA +SHEIRTP+NGI+GM LLL+T+L S Q+ +A+ A+
Sbjct: 246 ELQYAREQAEAASKAKSDFLAVMSHEIRTPLNGIMGMTGLLLETELDSKQKRFARVARRS 305
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+ L+ +IN++LD +KIEA KLELE + F L +++D+ ++ + K +EL + +
Sbjct: 306 SEDLLLIINDILDFSKIEAGKLELELLPFPLNTLIEDIAERYAPIAHGKNLEL-LCRTPL 364
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
P V+GD R Q+ITNL+ N++KFT+ G + + V L
Sbjct: 365 PPVSVIGDGPRLGQVITNLLSNAIKFTDSGEVEISVGL 402
>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
Length = 1618
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 67/416 (16%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++ V L V DTGIG+ R+F F QAD+ST+R YGGTG+GL+I K L ELM G+
Sbjct: 1020 AQRVRLRFEVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKSLAELMGGE 1079
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ S GSTF + E ++ P +G + +VVD+ A V
Sbjct: 1080 VGVDSEYGKGSTFWVS--------LPLERGAPARQLQPPASLRGRRVLVVDDNHTAATVL 1131
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L +G V + S +A T L + + +P + LL
Sbjct: 1132 SEMLQSMGFHVDQAYSGLEALET----LRQATQQQKP-----------------YGLLLL 1170
Query: 779 DWK-PN-------GHV-----FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
DW P GH+ ++P+++++ +D A+A G + V++KP+ AS+
Sbjct: 1171 DWHMPGMDGVELAGHIRSMGLAEIPQMLMVTAYGREDVMRAARAQGI-EAVLIKPVNASV 1229
Query: 826 IAACLQQVLSTEN--KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG 883
+ L Q L ++A P+ + Q +RG ++L+V+DN +N+MVA L+ G
Sbjct: 1230 LFDTLMQPLENAAVVAQRAPAVAPDSEALPQA-IRGAQVLLVEDNELNQMVAVELLRDAG 1288
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
V+ A + + AL L + +D MD+QMP MDG ATRR+R A+
Sbjct: 1289 FAVDVAGNGERALQLLDGKN-YDVVLMDMQMPVMDGETATRRLRADPRHAD--------- 1338
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++AMTA+ + A C GM+ +V+KP E L+ LA++ +
Sbjct: 1339 -----------LPVIAMTANAMEADRQRCFAAGMNDHVAKPIEPSVLWAALARWIR 1383
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 7/181 (3%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K E D +EL AE KS FLA +SHEIRTPMN I+GM L L + L+ Q DY
Sbjct: 854 KAEQDLRLAKEL---AEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLNPRQHDY 910
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
Q G+ L+ +IN++LD +KIEA KL +E F L +L+ V + K+ KG+EL
Sbjct: 911 VSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGYKAGAKGLEL 970
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAK 535
V+ VP ++GD R QI+ N N++KFTERG I + V + A+R ++ + +
Sbjct: 971 VCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTERGEISIAVRVQEQDAQRVRLRFEVR 1030
Query: 536 D 536
D
Sbjct: 1031 D 1031
>gi|242093796|ref|XP_002437388.1| hypothetical protein SORBIDRAFT_10g026020 [Sorghum bicolor]
gi|241915611|gb|EER88755.1| hypothetical protein SORBIDRAFT_10g026020 [Sorghum bicolor]
Length = 959
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 169/327 (51%), Gaps = 31/327 (9%)
Query: 367 KMQELKVR-----AEAADVAKS-----------QFLATVSHEIRTPMNGILGMLALLLDT 410
KM +++VR A+ +++KS Q LAT+SHEIR+P++G+L M +L T
Sbjct: 335 KMADIRVREAVQNAKETELSKSLHITEETMRAKQMLATMSHEIRSPLSGVLSMAEILATT 394
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
L Q + G ++ LIN++LD +K+E+ ++LE+ F R ++ VL +
Sbjct: 395 KLDKEQHQLLEVMLSSGDLVLQLINDILDLSKVESGAMKLESTTFRPREVVKHVLQT-AA 453
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
S K + L + D VP V+GD R RQI+TNL+ N+VKFT G + + + +
Sbjct: 454 ASLKKELTLEGCIGDDVPVEVIGDVLRIRQILTNLISNAVKFTHEGKVGIILQVVH---- 509
Query: 531 KTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAA--DGRNSWDKFKHLIDAE-GFQSNA 587
D + + GG SGT ++ +E A RN H E FQ+
Sbjct: 510 --DKQPGCKIEGGKIHKRAYSGTA----ITAVETAVVSPRNCDKDNLHCSKHEDAFQNGV 563
Query: 588 SIINMMASNGGSEDVTLMVC-VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
+ E+V + C V DTGIGIP + +F +MQA + +R YGGTG+GL+
Sbjct: 564 PTCENFKEDIEGEEVVWLRCDVYDTGIGIPEKSLPLLFKRYMQASTDHARKYGGTGLGLA 623
Query: 647 ISKCLVELMRGQISFVSRPQVGSTFSF 673
I K LVELM G ++ VS+ GSTF+F
Sbjct: 624 ICKQLVELMGGTLTVVSKENEGSTFTF 650
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 12/152 (7%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KIL+V+DN VN +VA L++ G ++ + A+ +Q H +D MD+ MPEMDG
Sbjct: 809 KILLVEDNKVNIIVAKSMLEQLGHAIDIVNNGMQAIRAVQQ-HQYDLILMDVHMPEMDGL 867
Query: 921 EATRRIRQMESKA---------NEQMMNGG--SSVDGTAKRDELHLPILAMTADVIHATF 969
+AT+ IR E+ + QM+ SS AK+ +PI+AMTA+ +
Sbjct: 868 QATKHIRSFENTGCWDVSVKPEDNQMITDSTISSDSAHAKKQGQRVPIIAMTANSFAESS 927
Query: 970 DECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ECL GMD Y+SKP +N+ L ++ S+
Sbjct: 928 EECLAAGMDSYISKPVNFQNIKECLQRYLMSQ 959
>gi|442611793|ref|ZP_21026496.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441746538|emb|CCQ12558.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 752
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 205/434 (47%), Gaps = 65/434 (14%)
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
+A F S I+ ++ ++ V + + DTGIGI Q R+F F Q D+ST+R +
Sbjct: 373 NAIKFTSQGEILVKFSTQLDADRVCVSAQISDTGIGISELEQSRLFSSFSQVDASTTRQF 432
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
GGTG+GL+I K L ELM GQ+ S GS F F F K ++ E
Sbjct: 433 GGTGLGLAIVKKLCELMHGQVGVESEKGKGSRFFFDVYFDKSG---------AQHETACC 483
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII 758
K L+ ++++ A L I VK++ ++ +A N L ++ D D+I
Sbjct: 484 KQKTLRGLLIEGNNSSAIAMSEMLKVRDINVKIARTLIEA-----NNLINAYD---FDVI 535
Query: 759 LVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKA--GGFADTV 816
L+ + I+G+ + W VFK K+ LL + DE KA GF D V
Sbjct: 536 LLART--INGDKTE------QWAQQLEVFKSLKIALLGS--LADEETKAYFIDKGFVDYV 585
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGV-----PNGSSFHQGLLRGKKILVVDDNGVN 871
KPL + I + +Q+ E K+ R + P+ F+ +L+V+DN VN
Sbjct: 586 -HKPLTPAQIQSLCKQL---EAKKTGLRKIDIEELPDNVKFNH------HVLLVEDNKVN 635
Query: 872 RMVAAGALKKFGATVECAASAKAALDKL----QSPHCFDACFMDIQMPEMDGFEATRRIR 927
++VA+ L G V A + + A+D L Q MD QMPEMDGFEAT+RIR
Sbjct: 636 QLVASKLLDNLGLKVTIANNGREAIDVLKVHYQETDPIALVLMDCQMPEMDGFEATQRIR 695
Query: 928 QMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEE 987
Q E+ GT + +PILA+TA+ + + CL GM+ Y++KP +
Sbjct: 696 QGEA--------------GTRLK---RIPILALTANAMKGDEENCLNAGMNDYLAKPIQV 738
Query: 988 ENLYRELAKFFKSK 1001
+ L L+KF K
Sbjct: 739 DALTHSLSKFLLHK 752
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 109/173 (63%), Gaps = 3/173 (1%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
K+ E K +AE A KS+FLA +SHEIRTPMNG++GML+LL L Q ++ A+
Sbjct: 232 KLAESKEKAEEASKLKSEFLANMSHEIRTPMNGVIGMLSLLEKEPLKDHQTNFVNVAKGS 291
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
++L+ LIN++LD +KIEA KLELE V FNL A++ +++S S K +E + S
Sbjct: 292 AQSLLTLINDILDFSKIEADKLELEEVEFNLEALISEMISALSYKVETNQVEFILDTSQV 351
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL---AERTMVKTDAKD 536
FV+GDP RFRQI++NLV N++KFT +G I VK A+R V D
Sbjct: 352 QHVFVVGDPIRFRQIVSNLVSNAIKFTSQGEILVKFSTQLDADRVCVSAQISD 404
>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1526
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 200/435 (45%), Gaps = 60/435 (13%)
Query: 573 KFKH----LIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628
KF H +I AE Q A+ L + V DTGIGIP +AQ ++F PF
Sbjct: 978 KFTHQGEVVIQAEVLQETAT------------HAHLKLSVRDTGIGIPAAAQSKLFQPFS 1025
Query: 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688
Q D+ST+R YGGTG+GL+I K L ELM G IS S+ GSTFS + + YV + +
Sbjct: 1026 QVDASTTRKYGGTGLGLAICKQLTELMGGTISLQSQEGQGSTFSVELTLER-QPYV-QQL 1083
Query: 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTS 748
Q S +P +G + + VD+ + + G++V+ + + A + +
Sbjct: 1084 SQP-SARIPVDLQGKRLLAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQAV-- 1140
Query: 749 SEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAK 808
E + P +L + + GE G W +L+++ + + +A
Sbjct: 1141 REGRPFPLAVLDMQMPEVDGETLG------RWIKADPQLAETQLVMMTSLGLGEHSRRAA 1194
Query: 809 AGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG---------RGVPNGSSFHQGLLRG 859
GFA ++KP++ S + L L + + P Q L
Sbjct: 1195 EIGFA-AYLVKPVKQSRLQEALVMALGKSSGLSTSLLGMSPVLPQTTPREDRPRQSL--- 1250
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+IL+ +DN VN+ VA L+ G + A+ + LD LQ +D MD QMP MDG
Sbjct: 1251 -RILLAEDNPVNQKVALRQLESLGYKADVVANGQEVLDLLQK-VSYDLILMDCQMPVMDG 1308
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+EATRR+RQ E ++ + + ++A+TA+ + + CL+ GMD
Sbjct: 1309 YEATRRLRQQERRSGHRTV------------------VIAITANAMQEDRERCLQAGMDD 1350
Query: 980 YVSKPFEEENLYREL 994
Y+SKP +E+L R L
Sbjct: 1351 YLSKPVLKEDLQRLL 1365
Score = 154 bits (389), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 107/146 (73%)
Query: 383 SQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAK 442
S FLAT+SHEIRTPMN +LGM LLL+T L++ QRD+ +T +I G AL+ LIN++LD +K
Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRISGDALLTLINDILDFSK 909
Query: 443 IEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQII 502
+EA ++ELE + F+LR+ L++V LF+ + KG+ELAV + +VP ++ GD R RQI+
Sbjct: 910 LEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLRQIL 969
Query: 503 TNLVGNSVKFTERGHIFVKVHLAERT 528
NLV N++KFT +G + ++ + + T
Sbjct: 970 NNLVSNAIKFTHQGEVVIQAEVLQET 995
>gi|350553869|ref|ZP_08923024.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349789579|gb|EGZ43526.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 818
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 189/416 (45%), Gaps = 66/416 (15%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
VTL V D+GIG+ Q+R+F F QADSST+R YGG+G+GL+I K L LM GQI
Sbjct: 225 VTLHFAVRDSGIGLSPEQQQRLFQSFTQADSSTTRRYGGSGLGLAICKRLTALMDGQIWV 284
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF FTA FG K+ ++ + E LP L+ +VVD+ V
Sbjct: 285 ESALGAGSTFHFTARFG--KQTGLPSARRQRPEALP----ALRILVVDDNQSAREVLGAM 338
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L G ++ ++S A + A+ L +E P F L+DWK
Sbjct: 339 LTAFGFYLEEAAS--GAQAIAR--LAQAEQDGTP-----------------FELVLMDWK 377
Query: 782 PNG-------------HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
G H+ +++ T +DE +A G + KP+ S +
Sbjct: 378 MPGMDGLATTRTIQHDHLLLKAPTVIMVTAYGRDEAQRAADGLQVAGFLTKPVVPSTLLD 437
Query: 829 CLQQVL---STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+ L + + R++ R + Q LRG +IL+V+DN +N+ +A L G
Sbjct: 438 AILTALGHQAVTHHRRSERQDSTAEAVAQ--LRGARILLVEDNAINQELALELLTSNGIR 495
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V A + + AL+ L + FD MD QMP MDG+ ATR IRQ + +
Sbjct: 496 VAVANNGQEALELL-AEQTFDGVLMDCQMPVMDGYTATRAIRQNPAWGD----------- 543
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
LP+LAMTA+V+ + + GM+ ++ KP + + +A + K
Sbjct: 544 ---------LPVLAMTANVMTGDRERAIAAGMNDHIGKPVKVREMLATMACWIAVK 590
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS FLA +SHEIRTPMN ILGM L L TDL+ QR+Y +AL+ +I
Sbjct: 67 AEEATRAKSDFLANMSHEIRTPMNAILGMSHLALQTDLTPKQRNYIDKVHRSAEALLGII 126
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++E+ F L +LD++ +L K+ KG+EL +P ++GD
Sbjct: 127 NDILDFSKIEAGKLDMESAEFRLEDVLDNLANLVGLKAEEKGLELLFDTHQALPTALIGD 186
Query: 495 PGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERT 528
R Q++ NL N+VKFTE G + V+V + E +
Sbjct: 187 ALRLGQVLINLGNNAVKFTEPGGEVLVRVTVFEES 221
>gi|372488517|ref|YP_005028082.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359355070|gb|AEV26241.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 1026
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 184/641 (28%), Positives = 263/641 (41%), Gaps = 141/641 (21%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AE A+ AKS FLA +SHEIRTPMNG++GM L LDT+L+ QRDY + Q+ AL+
Sbjct: 403 KEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALL 462
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+ I+DD+L ++ +EL F +KV
Sbjct: 463 S---------------------------IIDDILDFSKIEAGRLDVELIPFDLEKVCADA 495
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM-VKTDAKDETLLNGGTEEGVCR 550
L RT+ V+ D K LL R
Sbjct: 496 L----------------------------------RTVAVRADQKGLELL--------AR 513
Query: 551 SGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI-INMMASNGGSEDVTLMVCVE 609
G G L G GR L +A F I + + + G+ L CV
Sbjct: 514 RGPGVPRRLLG---DPGRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVS 570
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTGIGI QE +F F Q DSST+R +GGTG+GL+I L ELM G+I S P GS
Sbjct: 571 DTGIGIAPEKQEHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGS 630
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL-GIM 728
F FT + + + E G L VV + + RL G++
Sbjct: 631 AFHFTL------QLPTDGAAAPEPERRLSGKPALLLVVANAR---------QRCRLQGLL 675
Query: 729 VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW---------ISGEDSGFNAQLLD 779
+++ A+S A+ + L+E+ W + G D+G + L
Sbjct: 676 ASWGATVVAAASGAEG------------LALLEQGQWDGVVADSRPVDG-DAGDLLEHLA 722
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
P ++P L+LL+ + + E + KA G + KP A + LQ +L
Sbjct: 723 RSPG----RVPLLMLLSPSRMRQEIARCKALGVGH-YLGKPALADELWRSLQALLEP--- 774
Query: 840 RQAGRGVPNGSSFHQGL-LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
A GVP + G G ++L+ +D+ VN+ + L++ G V A A+
Sbjct: 775 --AVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAA 832
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
FD MD+QMPEM G +ATR IR A+EQ R L I
Sbjct: 833 AAR-RRFDLVLMDMQMPEMGGEQATRLIR-----ADEQ------------ARGLAPLRIY 874
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
A++A L GMDGY+ KP ++++L LA +
Sbjct: 875 ALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVLAGLAR 915
>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 945
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 112/168 (66%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
V + ++ + K AEAA+ AKSQFLA +SHEIRTPMNG+LGM LLL T L+ QR
Sbjct: 257 VRERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMTELLLSTALTQKQRSLT 316
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
+T G L+ +INE+LD +KIEA KL+LE + F LR ++D + LF+E + K +EL
Sbjct: 317 ETLHRSGTGLMDIINEILDFSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELT 376
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
FV +P+ V+GDP R RQI+ NLVGN++KFT+ G + V + L T
Sbjct: 377 CFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFTQSGDVAVTLELVTPT 424
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 185/403 (45%), Gaps = 43/403 (10%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+ ++TL + DTG+GIP + Q R+F F QAD+ST+R +GGTG+GL+I K L LM G
Sbjct: 425 TTNLTLKFRIRDTGVGIPEATQARLFQAFSQADNSTTRKFGGTGLGLAIVKQLALLMGGD 484
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ S GSTF FT E + S + + P G ++VD+ P +
Sbjct: 485 VGVDSVSGQGSTFWFTVEL----EQAAQRTAASGATERP--LDGFSILIVDDNPTNRHIL 538
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ HL+ G V ++S +A + T+ Q I L D + D AQ +
Sbjct: 539 ETHLSAWGAAVLSATSGLEALALLDRQCTA-----QRRIHLAVLDIHMPDMDGMTLAQTI 593
Query: 779 --DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
D + +G V + L + + DE + + + KP S++ CL ++
Sbjct: 594 REDARLSGMVL----VALSSVDQVTDESQRHPS--LFSAWLRKPAHQSLLKDCLTRL--C 645
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+ G P Q + +L+ +DN VNR VA L+ G T + + A+
Sbjct: 646 HHVPTTGAPAPVQPD-DQAVPFAAHVLLAEDNPVNREVAFTMLELLGCTTTMVENGREAV 704
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ L + FD MD MPEMDG AT IR+ E++A + H
Sbjct: 705 EALTN-RSFDLVLMDCHMPEMDGLTATALIREQETQATQPR----------------HTT 747
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFE----EENLYRELA 995
I+A+TA+ + + CL GMD Y+SKPF +E L+R L+
Sbjct: 748 IVALTANALQGDRERCLAAGMDDYLSKPFTLTTLKEVLHRRLS 790
>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
Length = 796
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 180/654 (27%), Positives = 280/654 (42%), Gaps = 119/654 (18%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
VE+ ++E +AEAA +AKS FLA +SHEIRTPMNG+LGM LL+ ST+ D
Sbjct: 245 VEERTADLEEAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLM-----STELDTY 299
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
Q LI ++ +L I++D+L FS+ IE
Sbjct: 300 QRE---------LIGTIMSSGT-------------SLVTIINDILD-FSK------IEAG 330
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLL 540
F ++ +P R+ I N+ + AE+ + D +L
Sbjct: 331 KFSLNE-------EPFNLREGIENVA-----------TLMAGRAAEKDLELFVRYDPSL- 371
Query: 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSE 600
EGV G ++ L + D+ + LID G QS E
Sbjct: 372 ----PEGVFTDGGRLRQVITNL-VGNAIKFTDEGQVLIDVTGAQSG-------------E 413
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
V L + V DTGIGIP E +F F QAD+++SR Y GTG+GL+I K ++ELM G+I
Sbjct: 414 TVDLRISVTDTGIGIPPEKLEAIFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIG 473
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S G+TF F + Y +D + G + +VD+ +
Sbjct: 474 VTSELGRGATF-FIDI-----NYKIDDRASLRPTIDTAELAGARIAIVDDNATNLRILSE 527
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDSGFNAQLLD 779
L + SS K+ + E + PD+I+ + ++G + G +
Sbjct: 528 QLAAWNTEIFAFSSGKEIFQWLD---SRGEGEALPDVIITDYQMPEMNGIELGLGIRART 584
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV------ 833
P +P ++L + K+E K+ ++KP+R+ +A + +
Sbjct: 585 GFP-----PIPIIMLSSVCAPKEEGSKSLP---LSAWLVKPIRSLQLAEYVFEAKMKTGR 636
Query: 834 ---LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
+ + +A R + + SS + + ILVVDDN VN++V LK + + A+
Sbjct: 637 FGDVEALAEAKADRSI-SASSDPDAIC--ETILVVDDNLVNQLVITNMLKGWATEILTAS 693
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ + A++K S + D FMD+ MP MDG EATRRIR ME+ N
Sbjct: 694 NGEDAIEKF-SAYSPDIIFMDVSMPVMDGLEATRRIRGMEADQNLPTT------------ 740
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
PI+ TA + CLK GM ++KP +E++ + K+ S P S
Sbjct: 741 -----PIVGATAHAMDEDRQRCLKAGMVDVLTKPVRKESVDGMVLKWAASSPQS 789
>gi|383454339|ref|YP_005368328.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
gi|380732170|gb|AFE08172.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
Length = 909
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 115/170 (67%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G ++ + + D +Q + AE A+ AKS FLATVSHEIRTPMN I+GM LL+DT L
Sbjct: 215 GQSMGFIAIYHDVTDLQRARQSAEDANQAKSLFLATVSHEIRTPMNAIIGMAGLLMDTAL 274
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
+ QRD+A T + G AL+ L+N++LD +KIEA ++ELE FNLR ++ VL L + ++
Sbjct: 275 TPEQRDFASTIRQSGDALLGLLNDMLDFSKIEAGRVELEQQPFNLRQCVESVLDLLAMRA 334
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
K ++L V+D+ P V+GD R RQ++ NLVGN+VKFTERG + + V
Sbjct: 335 SEKSLDLGYHVTDETPVSVVGDGARLRQVLLNLVGNAVKFTERGGVSISV 384
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 190/414 (45%), Gaps = 62/414 (14%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V+DTG+GI +A+ +F PF Q + S SR YGGTG+GL+ISK LVE M G++ S
Sbjct: 399 LHFAVQDTGLGITEAARAGLFQPFNQLNESVSRRYGGTGLGLAISKRLVEAMGGRLWMES 458
Query: 664 R--PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFK--GLKAVVVDEKPVRAAVTQ 719
P G+TF FT + + + P K G + +VVD+ + +
Sbjct: 459 EGVPGKGATFHFT--------FQAREAPRGGEPLRPDALKLHGRRVLVVDDNAINRKLLG 510
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L G+ + S +A S ++G +F I+ D + D A +
Sbjct: 511 RQLAAWGMAIVEVGSGAEALSKLESGA-----RFDLAIL----DHRMPLMDGPTLAAHIR 561
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS----MIAACLQQVL- 834
+ + +LP L+L S D+ D A+ G V+ +P++AS + CL Q L
Sbjct: 562 QQRDAR--ELPLLLL----TSFDQRD-AQPPGLFTAVLPRPVKASHLHDALMTCLAQDLI 614
Query: 835 ------STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
T R V N Q LR IL+V+DN N+ +A L++ G +
Sbjct: 615 SARPMPVTPAPATRERSVFNTRPGEQMPLR---ILLVEDNPTNQKLALLVLERLGYPADT 671
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A + + L L S +D MD+QMPE+DG +ATR++RQ + +EQ
Sbjct: 672 ANNGREGL-SLISRKRYDVVLMDVQMPELDGLQATRQLRQ-DMPVSEQPW---------- 719
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
++AMTA+ + A ECL GMD ++SKP E L L + ++ P
Sbjct: 720 --------VIAMTANAMTADRRECLDAGMDDFLSKPIRVEELISALRRAWERLP 765
>gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
Ellin428]
gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
Ellin428]
Length = 977
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/402 (31%), Positives = 189/402 (47%), Gaps = 58/402 (14%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + V DTG+GI AQ+ +F F QAD+ST+R +GGTG+GL+I K LVE M G I S
Sbjct: 496 LRLQVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTGLGLAICKQLVEKMHGCIGLES 555
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-------GFKGLKAVVVDEKPVRAA 716
P GS F FT + K +D+PP G + +++D+ R
Sbjct: 556 TPGKGSIFWFTLLLSK--------------QDVPPEISTGDHGLINQRVLIIDDNAPRGR 601
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ Q L + KM S + + T ++ +++++ I +++ D ++ A
Sbjct: 602 ILQERL----VAWKMRSELVHEADTLRHLRVAAQERDPYPITIIDMDL----PNADRLAL 653
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL-- 834
+ + K + + ++ILL + + + G D+ KP+R S + CL L
Sbjct: 654 VREIKSDPQIAG-TRVILLTEFGRRLDFAELNTAGIFDSR-FKPVRQSALFDCLTNALLE 711
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
S R PN SF R ++ILV +DN VN+ VA G L+K G + A +
Sbjct: 712 SAPRVRTPISMSPNPHSF-----RPERILVAEDNAVNQRVALGQLRKLGYRADVAGNGFE 766
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
AL L S +D MD MPEMDG+EAT IRQ E GT +
Sbjct: 767 ALQAL-SQIAYDIVLMDCHMPEMDGYEATLAIRQREK--------------GTQR----- 806
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
I+AMTA+ I ++CL GMD YVSKP +L L +
Sbjct: 807 AWIIAMTANAISGDREQCLAAGMDDYVSKPVRTADLADALER 848
Score = 149 bits (377), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 113/172 (65%), Gaps = 6/172 (3%)
Query: 357 HIVKVEDDFHKMQELKVRAEAADVA------KSQFLATVSHEIRTPMNGILGMLALLLDT 410
H+ VED + ++A D A KS+FLA +SHEIRTPMNG++GM LLLDT
Sbjct: 313 HVGTVEDITERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPMNGVIGMTNLLLDT 372
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
L++ QRD+A+T + + L+ +IN++LD +KIEA K+ E + FNL +++ L L ++
Sbjct: 373 SLNNEQRDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLAK 432
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
++ KGIELA F+ VP + GD GR RQ++TNLV N++KFT+ G + ++
Sbjct: 433 QAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFTQTGEVTIRT 484
>gi|398857234|ref|ZP_10612936.1| PAS domain S-box [Pseudomonas sp. GM79]
gi|398241281|gb|EJN26937.1| PAS domain S-box [Pseudomonas sp. GM79]
Length = 1463
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 206/427 (48%), Gaps = 43/427 (10%)
Query: 579 DAEGFQSNASIINMMASNGGSED-VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F I+ M G +D V L V DTGIG+ + R+F F QADSST+R
Sbjct: 863 NAAKFTERGEIVVGMEEVGVQDDRVQLHFWVRDTGIGMTVDQCSRMFQSFSQADSSTTRK 922
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
YGGTG+GLSISK LVELM G I S P VGSTF F G + + + K+++L
Sbjct: 923 YGGTGLGLSISKKLVELMDGHIWVESEPGVGSTFHFQVRLG--VQQGVQPRRMFKADEL- 979
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
G++ +VVD+ + G+ V ++ + S A L +E K P D
Sbjct: 980 ---LGMRVLVVDDNASAREILSGMARSFGLEVDVAHN----GSLALRMLADAEHKALPYD 1032
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILL-ATNISKDECDKAKAGGFADT 815
++L+ D + G D + + + + P +I++ A + + + G
Sbjct: 1033 LVLM--DWRMPGMD---GVETVSRMHSASLMHTPSVIMVTAFGREEAREEAERQGIQLPV 1087
Query: 816 VIMKPLRASMIAACLQQVLS---TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNR 872
V+ KP+ S + + VL + R R N S+ L G ++L+V+DN +N+
Sbjct: 1088 VLTKPVTPSSLLEAIGVVLGKGPQGDTRAGERSQQNASTLAS--LNGARLLLVEDNELNQ 1145
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
+A L+ G ++ A + ALD L FD MD QMP MDG+ AT+RIRQ + +
Sbjct: 1146 ELACELLESVGIRLKLARHGQEALDILAEDGNFDGVLMDCQMPVMDGYTATQRIRQ-QPR 1204
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
N LP++AMTA+ + ++ L GM+ ++SKP + ++++
Sbjct: 1205 FNA-------------------LPVIAMTANAMDGDREQALSSGMNDHISKPLDVDDMFA 1245
Query: 993 ELAKFFK 999
LAK+ +
Sbjct: 1246 TLAKWIR 1252
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 89/140 (63%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLA +SHEIRTPMN I+GM L L TDL S QR+Y + + L+ +IN++LD
Sbjct: 736 AKSEFLANMSHEIRTPMNAIIGMSHLALRTDLDSRQRNYIEKVHRSAENLLGIINDILDF 795
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIEA ++ LE F L +LD ++ K+ +KG+EL +P +LGDP R Q
Sbjct: 796 SKIEAGRMSLEQTPFRLEDVLDSFAAMIGLKTEDKGLELLFQTPPDLPTALLGDPLRLGQ 855
Query: 501 IITNLVGNSVKFTERGHIFV 520
++ NL N+ KFTERG I V
Sbjct: 856 VLINLGNNAAKFTERGEIVV 875
>gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
Length = 1013
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 128/192 (66%), Gaps = 10/192 (5%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLAT+SHEIRTPMNG++GM LLL++ L+ QR+ A+ + G L+ +IN++LD +
Sbjct: 485 KSEFLATMSHEIRTPMNGVIGMTNLLLESALTPEQRECAEVVRNSGDHLLMIINDILDFS 544
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA +L LE + F+ R ++DD L L +E++R KG++L + VP V GDPGR RQ+
Sbjct: 545 KIEAGRLTLETIDFDFRGMIDDTLDLIAEQARQKGLDLVGLIDASVPSAVRGDPGRLRQV 604
Query: 502 ITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGG-TEEGVCRSGTGQ---FN 557
+ NL+GN++KFT+RG + +++ +A+ DA+ +L G T+ G+ S G+ F
Sbjct: 605 LINLLGNAIKFTDRGEVVLRMTVAQ------DAQSHVVLRGDVTDTGIGISPEGRNKLFQ 658
Query: 558 TLSGLEAADGRN 569
T S ++A+ R
Sbjct: 659 TFSQVDASTTRR 670
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 190/420 (45%), Gaps = 44/420 (10%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++ M + V L V DTGIGI + ++F F Q D+ST+R YGGTG+GL+I
Sbjct: 622 VLRMTVAQDAQSHVVLRGDVTDTGIGISPEGRNKLFQTFSQVDASTTRRYGGTGLGLAIC 681
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L ELM+G+I S P GS F FT K + ++ E LP G + +
Sbjct: 682 KRLTELMQGEIGMESAPGKGSRFWFTVRLEKGAA-----ARATEPESLPT-LDGQRVCLA 735
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
+ + + G+ + D + A ++ D D+++ E+ +SG
Sbjct: 736 GKPGSSHTFLEQAVASRGM---QGVAANDGTEAAILMRKAAADGHPFDLVIFEEQ--LSG 790
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
+ AQ + P ++ +I++ + + + A+ G A + +P+ + +
Sbjct: 791 GEGAAFAQTMKADP---ALRMIPVIVVTSFGQRGDAGAARDAGVA-AYLTRPIHQAALWR 846
Query: 829 CLQQVLS--------TENKRQAGRGVPNGSSFHQGLLRGK-KILVVDDNGVNRMVAAGAL 879
CL VL+ T + R + S + RG+ +LVVDD +N++VA L
Sbjct: 847 CLATVLAPVSDPSGQTAAEEGPMRPLITRHSMQEQTDRGRPHVLVVDDQKLNQVVAVSLL 906
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
++ G V+ A S +AA + + + +D FMD QM MDG++A IR+ E
Sbjct: 907 ERLGCLVDVAESGQAAAEAVAAT-SYDLLFMDCQMFGMDGYQAAALIRKRE--------G 957
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
GG V PI+A+T + + +CL GMD ++KP + L L ++ K
Sbjct: 958 GGPRV-----------PIIALTGHMQQSDRAQCLAAGMDDCLTKPLQFTLLEAMLRRWLK 1006
>gi|381165686|ref|ZP_09874913.1| Putative two-component sensor histidine kinase (fragment),
unorthodox system [Phaeospirillum molischianum DSM 120]
gi|380685176|emb|CCG39725.1| Putative two-component sensor histidine kinase (fragment),
unorthodox system [Phaeospirillum molischianum DSM 120]
Length = 919
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 195/404 (48%), Gaps = 44/404 (10%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G E L V V+DTGIGIP +A++R+F F QAD+ST+R +GG+G+GL+I K L+ LM G
Sbjct: 425 GPERAILHVSVQDTGIGIPAAARDRLFGMFSQADASTARRFGGSGLGLAICKRLLVLMGG 484
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAA 716
QI F S VGSTF F+ + + + SEDLP + + +VVD+
Sbjct: 485 QIGFDSEEGVGSTFWFSVPLDRTDD--------TPSEDLPDNPLRDARILVVDDNFTNRE 536
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP--DIILVEKDCWISGEDSGFN 774
+ + L G V ++ D ++T + +++ + P +IL + ++G D
Sbjct: 537 IFTHQLRAWGAAVTLA----DNAATGLADIRAAQGRGVPFETVILDHQMPGMTGLDL--- 589
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
A +L P LP I+LA++ A D +++KP+R S + L +L
Sbjct: 590 AAVLRADPT--TCGLP--IILASSADLGSLHDKAAQLSLDQILIKPIRQSTLLDSLMTLL 645
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
R + + L K+LV +DN +N+ VA G L K G + A
Sbjct: 646 G--RGRSGPHPINATETSSPSPLLSLKVLVAEDNAINQQVAVGLLVKLGHRADVADDGGE 703
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A++++ +D MD+QMP +DG +ATR IR + + +
Sbjct: 704 AIERVMRGD-YDLVLMDMQMPGIDGLDATRSIRALAPPKS-------------------N 743
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+ I+AMTA+ + D CL GMD Y+SKP + L + L ++
Sbjct: 744 IVIIAMTANAMTGDRDLCLTGGMDDYISKPIDRRRLAQCLDRWM 787
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 107/160 (66%), Gaps = 4/160 (2%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLAT+SHEIRTPMNGI+GM +LLLDTDL+ Q+ +A T + +AL+ +IN++LD
Sbjct: 278 AKSEFLATMSHEIRTPMNGIIGMTSLLLDTDLTLEQQHFANTVRASAEALLHIINDILDF 337
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+K+EA +LELE F +R +++ V+ + S + R + IEL+ V + GD GR RQ
Sbjct: 338 SKMEAGRLELEQSAFEIRPLIEGVVDILSPRVRGRDIELSYLVPLETRGVFRGDTGRLRQ 397
Query: 501 IITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKD 536
I+ NL GN++KFTE G + ++ L ER ++ +D
Sbjct: 398 ILLNLAGNAIKFTEHGTVSIQASLKQDGPERAILHVSVQD 437
>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
Length = 1407
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 112/156 (71%)
Query: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGK 428
Q+ ++ AE A+ AKS FLAT+SHEIRTP+NG++GM ALL DT LS QR+YA T + CG+
Sbjct: 881 QQARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTALLEDTPLSEEQREYAHTIRSCGE 940
Query: 429 ALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVP 488
+L+ +IN++LD +KIE+ K+ELE LR+ L++VL +F+ K+ G++L + VP
Sbjct: 941 SLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLDLIYQIDPLVP 1000
Query: 489 EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+LGD R RQI+ NLVGN+VKFT +G + V V L
Sbjct: 1001 PQILGDSLRLRQILINLVGNAVKFTHQGEVMVGVQL 1036
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 172/386 (44%), Gaps = 50/386 (12%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGIP S ++F F Q DSS SR YGGTG+GL IS+ L+ELM G I
Sbjct: 1045 VELAFTVRDTGIGIPGSKIGQLFKAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIRV 1104
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S G+ F FT V +E K+ + G ++VD+ + +
Sbjct: 1105 ESEVGKGTAFRFTLVCQTGEE------KKPAAYGPQSAIAGKSVLIVDDNGASQSALRTQ 1158
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L + ++ S ++A + + F D+I++++ ++ +
Sbjct: 1159 LECWHLRPTLAGSGREALV-----IIAQHGPF--DLIIIDQQM----------PEMDGIE 1201
Query: 782 PNGHVFK-LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
G + + P + L+ + D+ K A F+ +I KP+ + + +QQ L+ +
Sbjct: 1202 LAGEIKRSYPTIPLILLSWVGDQRRKKHADLFSG-MITKPIHYNHLGQSVQQALTPQENT 1260
Query: 841 QAGRGVPNGSSFHQGLLRGK--KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ S++ R +IL+ +DN +N + L K G + A + + L +
Sbjct: 1261 SLQPTDRSKSAYKVDFARQYPLQILIAEDNPINVKLLVRVLNKLGYSPTVANNGQEVLSR 1320
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L FD MDIQMPEMDG EATR IRQ A R I+
Sbjct: 1321 LH--EGFDLILMDIQMPEMDGLEATRLIRQQ------------------AIRQPW---II 1357
Query: 959 AMTADVIHATFDECLKCGMDGYVSKP 984
A+TAD + + CL GM+ Y+SKP
Sbjct: 1358 ALTADAMLEDRELCLAVGMNDYMSKP 1383
>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1823
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 109/155 (70%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ + AE A+ AKS+FLAT+SHEIRTPMN ++GM LLLD DL+ QRD+ +T + G
Sbjct: 1027 LEQARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMDLTPEQRDFVETIRTSG 1086
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KIE+ K++LE F LR +++ L L + K+ KG+ELA + V
Sbjct: 1087 DALLTIINDILDFSKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGLELAYLIDSSV 1146
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P VLGD R RQI+ NL+GN+VKFTE G I V V
Sbjct: 1147 PSKVLGDVTRLRQILVNLLGNAVKFTEAGEIVVSV 1181
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+IL+ +DN VN+ VA L++ G + A + AL+ L+ +D MD+QMP+MDG
Sbjct: 1534 RILLAEDNLVNQKVATHLLERIGYRADIAGNGLEALEALRK-QFYDVVLMDVQMPQMDGL 1592
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATRRI Q ++L I+AMTA+ + ++CL GM+ Y
Sbjct: 1593 EATRRICQ-------------------EWPEQLRPRIIAMTANAMQGDREKCLAAGMNDY 1633
Query: 981 VSKPFEEENLYRELAK 996
++KP E L L+K
Sbjct: 1634 ITKPVRREELANALSK 1649
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 24/130 (18%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
+ + V+DTGIGIP +R+F F Q D+ST+R YGGTG+GL+IS+ L E+M G++ VS
Sbjct: 1210 IQIAVKDTGIGIPPDRMDRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1269
Query: 664 R----------PQVGST----------FSFTAVFGKCKEYVFEDIKQ---SKSEDLPPGF 700
+ P +G+ F T + + F I Q S+S + PP F
Sbjct: 1270 KAAPVAGNSHSPPIGTRQSMAGSPPEHFVDTQILESGSIFYFTVIAQAVESRSVEEPPEF 1329
Query: 701 -KGLKAVVVD 709
KG + ++V+
Sbjct: 1330 IKGKRLLIVE 1339
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915
++GK++L+V+++ NR V + +G AA+ A+ LQ D + + +
Sbjct: 1329 FIKGKRLLIVENHDTNRQVLIKLSQYWGMIPIAAATGAEAMQLLQHNPMVDLAILAMNLA 1388
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT----ADVIHATFDE 971
+MDG +IR E ++NG +R LP++ T A+V E
Sbjct: 1389 DMDGIALANKIRNFE-LGYSHLVNGSEPARTEPER---RLPMVMFTYLGKAEVWKKL--E 1442
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFF 998
+ G+++KP ++ Y L + F
Sbjct: 1443 NAEINFAGFLTKPLKQSQFYNVLLQIF 1469
>gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid
protein [Rhizobium etli CFN 42]
gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
hybrid protein [Rhizobium etli CFN 42]
Length = 1133
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 111/156 (71%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 580 ELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKS 639
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F+L ++DV +L S + K IEL V +
Sbjct: 640 GNALLTIINDILDFSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAAEKNIELLVRAAPD 699
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V
Sbjct: 700 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV 735
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 68/432 (15%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ A+ GG ++ + +EDTGIGIP + VF F Q D+S++R + GTG+GL+I+
Sbjct: 735 VGFQAAAGG--EIIASIRIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTGLGLAITA 792
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LV+L G I+ S GS F+ F + + + LP +G + +VVD
Sbjct: 793 GLVDLFGGYINAESEWGRGSVFTVNLPFAVAAARL-------EPKPLPINVQGARILVVD 845
Query: 710 EKPVRAAVTQYHLNRLGI----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEK 762
+ V + L+ G + + + A G+T D PD+
Sbjct: 846 DNEVNRRILTEQLSLWGFDGVAAEGGGTGLAILEAAADLGVTVDAVVLDYHMPDM----- 900
Query: 763 DCWISGEDSGFN-AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPL 821
+G N A+ L P LP + L + +IS E + A G A +MKP
Sbjct: 901 --------NGANVARRLRADP--RFVDLPIIFLTSMDISGTEKEFAALNGQAH--LMKPA 948
Query: 822 RASMIAACLQQVLSTENKRQAGRG--------VPNGSSFHQGLLRGKK-------ILVVD 866
RA+++ + +V+ +QA + +L +K +LV +
Sbjct: 949 RANVLRNTVVEVVRARRVKQASEAEIARLQTEAAVPAPEPAPMLVPQKRADEFVDVLVAE 1008
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRI 926
DN VN++V L+ G + + + A+ +S H MD+ MP M+G EATR I
Sbjct: 1009 DNEVNQIVFTQILQSSGLSFLVVKNGEEAVAAWES-HTPRIIMMDVSMPVMNGHEATRTI 1067
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
R+ E G R +PI+ +TA + + + CL GMD Y+SKP
Sbjct: 1068 REREK--------------GQGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPIS 1109
Query: 987 EENLYRELAKFF 998
E L ++ ++
Sbjct: 1110 PELLEEKIRQWL 1121
>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 929
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 196/407 (48%), Gaps = 56/407 (13%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+++ L V D GIGI Q+R+F PF QAD ST++ YGGTG+GL+IS LV+LM G+I
Sbjct: 431 KELLLRFEVRDRGIGISPEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEI 490
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVT 718
S GSTF FT +C+ +Q + E G G A+VVD+ + +
Sbjct: 491 GLESVAGQGSTFWFTL---RCQVQ-----EQPQHEAQQTGTLSGYLALVVDDIAINRQLL 542
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDK-FQPDIILVEKDCWISGEDSGFNAQL 777
+ L R G+ V + S ++A S + + + D+ + + D W L
Sbjct: 543 ERFLTRWGMDVLTAGSAEEAFSMLEYARSRRPVQLLLTDLQMPDCDGW----------GL 592
Query: 778 LDWKPNGHVFKLPKLILLATNISKDE---CDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
++ N + KL+LL + + + C + K G+ + KP+ S + L+ ++
Sbjct: 593 VEQIRNDQRYDELKLVLLPSAGKRGDARRCRELKVNGY----LTKPVIHSELYEALKAII 648
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKK----ILVVDDNGVNRMVAAGALKKFGATVECAA 890
G+ P S + +R + IL+VDD +NR +A L+K G V AA
Sbjct: 649 H-------GKEQPGSSPVTRHHVREAQGSCSILLVDDVEINRELARIILEKRGHRVVQAA 701
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ A+D + FD FMDIQMP MDGFEAT IR E Q
Sbjct: 702 NGLEAVDAARKER-FDLVFMDIQMPLMDGFEATNEIRSFELSQGLQ-------------- 746
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+P++AMTA + D CL GMDGY++KP +E++L R + +
Sbjct: 747 ---PVPVIAMTAYALQGDRDRCLAAGMDGYIAKPIKEDDLCRVIGQM 790
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 123/185 (66%), Gaps = 1/185 (0%)
Query: 334 LTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEI 393
L A L VIG + AA++ V++ +M+ K +AEA+ AKS+FLA +SHEI
Sbjct: 235 LGGAILLLVIGCGILLARQLAAVN-VQLMQSGEEMRIAKEQAEASSRAKSEFLANMSHEI 293
Query: 394 RTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV 453
RTPMNGILGM LL+DT+L+ Q DY ++ ++ + L+ +IN++LD +KIE +LE EA+
Sbjct: 294 RTPMNGILGMTELLMDTELNPQQFDYLRSVKVSAENLMDIINDILDFSKIEVGRLETEAI 353
Query: 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513
F LR++L L S ++ KG+EL V +P+ ++GDPGR RQ++ NL GN+VKFT
Sbjct: 354 PFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLPDTLIGDPGRLRQVLLNLAGNAVKFT 413
Query: 514 ERGHI 518
++G +
Sbjct: 414 DQGEV 418
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 23/163 (14%)
Query: 847 PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ---SPH 903
P + G L G LVVDD +NR + L ++G V A SA+ A L+ S
Sbjct: 514 PQHEAQQTGTLSGYLALVVDDIAINRQLLERFLTRWGMDVLTAGSAEEAFSMLEYARSRR 573
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
D+QMP+ DG+ +IR N+Q + DEL L +L
Sbjct: 574 PVQLLLTDLQMPDCDGWGLVEQIR------NDQ------------RYDELKLVLLPSAGK 615
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
A C + ++GY++KP LY L K G+
Sbjct: 616 RGDAR--RCRELKVNGYLTKPVIHSELYEALKAIIHGKEQPGS 656
>gi|334129574|ref|ZP_08503378.1| Sensor protein [Methyloversatilis universalis FAM5]
gi|333445259|gb|EGK73201.1| Sensor protein [Methyloversatilis universalis FAM5]
Length = 870
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 200/415 (48%), Gaps = 54/415 (13%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + V DTGIGI + Q VF F QAD+ST+R +GGTG+GL+I LV LM G++ S
Sbjct: 339 LHLWVRDTGIGIDAAKQALVFEAFAQADTSTTRRFGGTGLGLAICNRLVSLMGGRLWLES 398
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
P GSTF FT +C+ V E S PG + L ++ D P R+AV
Sbjct: 399 TPGQGSTFHFTM---RCR--VLEAAGLSPHFQRFPGLRVL--LIEDHPPSRSAVAAM--- 448
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGED-----SGFNAQL 777
LG M + ++ A A+ L + D +P DI++V++ + ED SGF
Sbjct: 449 -LGDMGASALAVG-AVQAARQALRQAHDSGRPFDILMVDRT--LPDEDAFDFVSGFCE-- 502
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFA-DTVIMKPLRASMIAACLQQVLST 836
PN +L +++++ + ++ D A A + KP A +A L LS+
Sbjct: 503 ---GPN----RLNRVVMMLSGANQ-AADNALARSLGVRGRLHKPFSAGELATALTDALSS 554
Query: 837 ENKRQA----------GRGVPNGSSFHQGLLRG--KKILVVDDNGVNRMVAAGALKKFGA 884
+ A G S H GL + +L+ +DN VN++VA L++ G
Sbjct: 555 QPDDSAHELDDFALTIGDLDIERSLVHSGLGSATVRHVLLAEDNPVNQLVAVRTLERAGY 614
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
V A + + ALD + S FD MD+QMP M G EATR IR A EQ +
Sbjct: 615 KVTVANNGQEALDLIDS-ESFDVVLMDVQMPVMGGIEATRAIR-----AREQRRSWVVDT 668
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
D HLPI+AMTA+ + + CL GMD YVSKP + E+L L + +
Sbjct: 669 DHVQ-----HLPIIAMTANAMKGDRELCLDEGMDDYVSKPVKAEDLLAALERVLE 718
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 100/149 (67%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AEAA AKS FLA +SHEIRTPMNGI+GM ALL DT L S QR+Y + AL+
Sbjct: 174 KEKAEAASRAKSDFLANMSHEIRTPMNGIMGMSALLQDTSLDSEQREYVHAIKTSADALL 233
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL +E V ++ + + ++ KG+EL ++ +P V
Sbjct: 234 VIINDILDFSKIEAGKLAIEEVECVPSDLVGEAARGLAIGAQQKGVELYCRIAPDLPRRV 293
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFV 520
LGDPGR RQI+ NL+GN+VKFTERG I V
Sbjct: 294 LGDPGRMRQILVNLIGNAVKFTERGEIEV 322
>gi|381158345|ref|ZP_09867578.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380879703|gb|EIC21794.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1274
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 122/178 (68%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
+E ++ L +A++A+ AKS+FLA +SHEIRTPMNG++GM +LLL+T + QR YA
Sbjct: 534 LETAINQANALAEQADSANRAKSEFLANMSHEIRTPMNGVIGMTSLLLETPMDDQQRQYA 593
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
+ + G++L+ +IN++LD +KIEA +LELEA+ F+LR +LDD+ + + ++ K +E
Sbjct: 594 EIIRSSGESLLGVINDILDFSKIEAGRLELEAIDFDLRNVLDDLAASLALRAHEKSLEFI 653
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
VP + GD R RQI+TNL GN++KFTE G + V+VHLAE+ D+ +++
Sbjct: 654 CAADAGVPAQLRGDASRLRQILTNLAGNAIKFTEVGEVSVRVHLAEQQPASVDSLEDS 711
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 9/113 (7%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGIP ++R+F F Q D+S++R +GGTG+GL+IS+ L ELM G+I
Sbjct: 716 VRLHFRVADTGIGIPPDKRDRLFQKFSQVDASSTRRFGGTGLGLAISRQLTELMGGEIGV 775
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP----PGFKGLKAVVVDE 710
S+P GSTF F E + ED S + D P P G + ++VD+
Sbjct: 776 DSQPGQGSTFWFELEL----ERLPEDADAS-NRDAPAQPAPDLSGKRVLIVDD 823
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+IL+ +DN +N+ VA G LK+ G + + + AL L+ H + MD+QMP MDG
Sbjct: 1004 RILLAEDNQINQQVALGLLKRLGIEADVVTNGEEALAALRQ-HPYALVLMDVQMPVMDGL 1062
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATR IR E+ GT D +PI+A+TA + CL+ GM+ Y
Sbjct: 1063 EATRCIRTREA--------------GTVNPD---IPIIALTAHAMAGDRQRCLQAGMNDY 1105
Query: 981 VSKPFEEE 988
+ KP E
Sbjct: 1106 LPKPLAAE 1113
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGA----TVECAASAKAALDKLQSPHCFDACFMDI 912
L GK++L+VDDN NR V G + ++ T E + + L F +D+
Sbjct: 813 LSGKRVLIVDDNATNRQVLRGRMLEWRLRPVDTAEATDALRLLYQALDDDDPFALALIDL 872
Query: 913 QMPEMDGFEATRRIR 927
QMP MDG + IR
Sbjct: 873 QMPGMDGAALCKAIR 887
>gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
E-37]
gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
E-37]
Length = 841
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 118/170 (69%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDL 412
G + I ++++D +++E +RAEAA+ AKS FLA +SHEIRTPMNG++GM LL +T+L
Sbjct: 304 GLRVDITQIKEDQQRLKEATIRAEAANRAKSAFLANMSHEIRTPMNGVVGMADLLRETEL 363
Query: 413 SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472
+ Q+ YA T + G+AL+ +IN++LD +KIEA KL L F+L + DV+ L +
Sbjct: 364 NDEQKLYADTIRSSGEALLVIINDILDYSKIEAEKLVLNPEPFDLERAIHDVVMLLQPTA 423
Query: 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
R+K I L V +P +GDPGR RQI+TNLVGN+VKFT +G++ V+V
Sbjct: 424 RDKDITLLVDYDMFLPTHFVGDPGRVRQILTNLVGNAVKFTVQGYVLVRV 473
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 177/404 (43%), Gaps = 66/404 (16%)
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
+GGS + + VEDTGIGIP E VF F Q + +R + GTG+GL+I++ LVEL
Sbjct: 478 EDGGS--TAVHITVEDTGIGIPADKVEHVFGEFNQVEDERNRKFEGTGLGLAITRRLVEL 535
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVR 714
M G++ S P GS F + + +E + LP K + VV D P R
Sbjct: 536 MGGEVWVESEPGRGSFFGLRIMLRTDEHPAYE------TAQLPRHLKRI-LVVDDHGPNR 588
Query: 715 AAVTQYHLNRLGIMV---KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
+ +T+ L LG+ + S DA S A + L + D PD+
Sbjct: 589 SILTK-QLAMLGLEITYCTTGSEAIDAFSDAHDLLMAEND--LPDMT------------- 632
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADT---VIMKPLRASMIAA 828
A+L GH LP +IL A + S G AD+ V+ +P+ +
Sbjct: 633 --GAELARQLQRGHP-GLP-VILFADHPSH------LPEGIADSVLAVLQRPVPRRALFD 682
Query: 829 CLQQV--LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
L++V + + R A + LL ILV +DN N++V K F +
Sbjct: 683 ALEKVHQMPPRSARPASPLRVEQETVAPPLL---DILVAEDNKTNQLVMRKMTKDFPVAL 739
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
A + A+D + D FMDI MP MDG +ATR IR++E +G V
Sbjct: 740 RFANNGVEAVDAFRDQRP-DLIFMDISMPRMDGKQATREIRRLE--------DGAPPV-- 788
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
PI+A+TA + + L+ G+ Y++KP + L
Sbjct: 789 ---------PIVAVTAHAMDGDRESILEAGLTDYLTKPLRKSEL 823
>gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
Length = 728
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 150/263 (57%), Gaps = 16/263 (6%)
Query: 268 LAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFR---KHKMICRYH 324
+A N + L V+D A P I Y + Q L E ++ G++ + +M+ R+
Sbjct: 102 IAANDSWLA-VFDGLEAVKPGISYIEILQ----FLTEEGIVNIGNTPPAQWRERMLDRWQ 156
Query: 325 QKASTP-----WTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAAD 379
A P W A+ + G + A+ I + ++Q+ + RAEAA+
Sbjct: 157 GNAPEPEVIRLWNG---AYIKLIDERGQGGDVVSLALDITETILREKELQDARRRAEAAN 213
Query: 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLD 439
AKS FLA +SHEIRTPMNG++GM LL+DTDL+ Q YA T + G+AL+ +IN+VLD
Sbjct: 214 HAKSSFLANMSHEIRTPMNGVVGMAELLMDTDLTEEQNLYANTIRKSGEALLVIINDVLD 273
Query: 440 RAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFR 499
+KIEA KL L F+L + +++ L +R+K +EL V +P GDPGR R
Sbjct: 274 YSKIEAEKLHLHEEPFDLERTVHELVMLLQPNARDKELELLVDYDMFLPTRFHGDPGRIR 333
Query: 500 QIITNLVGNSVKFTERGHIFVKV 522
Q++TNL+GN+VKFTE+GH+ V+V
Sbjct: 334 QVLTNLIGNAVKFTEKGHVLVRV 356
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 169/400 (42%), Gaps = 64/400 (16%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + VEDTGIGI Q +F F Q + + +R + GTG+GL+IS+ L+ +M+G I S
Sbjct: 376 LRITVEDTGIGIAPDKQAHIFGEFNQVEDAKNRRFEGTGLGLAISRKLIAMMQGDIWIGS 435
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
GSTF + E + D+ + LP + + ++VD + V + + L
Sbjct: 436 EEGRGSTFGISLNL-PVHERLDPDMLR-----LPDSLR--RVLIVDPQDVSRTILEKQLA 487
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
+G+ V+ SS G + E D+IL E + G D A+ L +
Sbjct: 488 SVGLDVRGCSS----------GAQALELCGATDLILSEHH--MPGMDGMELAEAL--REA 533
Query: 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
G +P ++LL+ D A+ V+ KP S + A L + E R
Sbjct: 534 GQ--DVP-IVLLSPFAGGTYVDPARP--LLSAVLQKPATRSDLLAALHKAAPPEPARPM- 587
Query: 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH 903
++L +DN NR+V + LK + A + A+D L
Sbjct: 588 -----------------RVLAAEDNRTNRLVFSSMLKDLNIELHFAEDGRQAVD-LYGEV 629
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
D FMDI MP MDG EAT IR +E H+PI+AMTA
Sbjct: 630 RPDIVFMDISMPGMDGKEATAHIRALEKSTGR------------------HVPIIAMTAH 671
Query: 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
+ + E L G+D Y++KP ++ + + + L
Sbjct: 672 ALGSDKTEILSAGLDHYMTKPLRKDAIIEHILTALPERAL 711
>gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory
protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 1118
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 111/156 (71%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 569 ELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 628
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 629 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 688
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V
Sbjct: 689 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV 724
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 185/418 (44%), Gaps = 68/418 (16%)
Query: 604 LMVCV--EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+M C+ EDTGIGIP E VF F Q D+S++R + GTG+GL+I+ LV+L G ++
Sbjct: 734 IMACIRIEDTGIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNV 793
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GS F+ F + + + LP +G + +VVD+ V +
Sbjct: 794 ESEWGKGSVFTINLPFPVAAARL-------EPKPLPINVQGARILVVDDNEVNRRILTEQ 846
Query: 722 LNRLGIMVKMSSS----IKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFN 774
L+ G + S + + A G+T D PD+ +G D
Sbjct: 847 LSLWGFDGVAAESGGTGLAILEAAANLGVTVDAVVLDYHMPDM---------NGADV--- 894
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
A+ L P +LP + L + +IS E + A G A +MKP RA+++ + +V+
Sbjct: 895 ARRLRADP--RFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVV 950
Query: 835 STENKRQA-----GRGVPNGSSFHQGLLRGKK------ILVVDDNGVNRMVAAGALKKFG 883
+QA R + + K+ +LV +DN VN++V L+ G
Sbjct: 951 RASRVKQASEADIARLQTEAAVPAPAPMPQKRAAEFVDVLVAEDNEVNQIVFTQILQGTG 1010
Query: 884 AT---VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
+ V+ A AA ++ H MD+ MP M+G +AT+ IR+ E
Sbjct: 1011 LSFLVVDNGEEAVAAWER----HTPRIIMMDVSMPVMNGHQATQTIREREK--------- 1057
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
G R +PI+ +TA + + + CL GMD Y+SKP E L ++ ++
Sbjct: 1058 -----GQGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWL 1106
>gi|424871849|ref|ZP_18295511.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393167550|gb|EJC67597.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 1118
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 111/156 (71%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++++L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 569 ELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 628
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 629 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 688
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V
Sbjct: 689 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV 724
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 185/415 (44%), Gaps = 62/415 (14%)
Query: 604 LMVCV--EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+M C+ EDTGIGIP E VF F Q D+S++R + GTG+GL+I+ LV+L G ++
Sbjct: 734 IMACIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNV 793
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GS F+ F + + + LP +G + +VVD+ V +
Sbjct: 794 ESEWGKGSVFTINLPFAVAAARL-------EPKPLPINVQGARILVVDDNEVNRRILTEQ 846
Query: 722 LNRLGI--MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L+ G + A A GL + D D + + ++G D A+ L
Sbjct: 847 LSLWGFDGVAAEGGGTGLAILEAAAGLGVTVDAVVLDYHMPD----MNGADV---ARRLR 899
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
P +LP + L + +IS E + A G A +MKP RA+++ + +V+
Sbjct: 900 ADP--RFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANVLRNTVVEVVRASRV 955
Query: 840 RQAGR----------GVPNGSSFHQGLLRGKK---ILVVDDNGVNRMVAAGALKKFGAT- 885
+QA VP +S Q R + +LV +DN VN++V L+ +
Sbjct: 956 KQASEAEIARLQTEAAVPAPASVPQK--RAAEFVDVLVAEDNEVNQIVFTQILQGTDLSF 1013
Query: 886 --VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
V+ A AA ++ H MD+ MP M+G +AT+ IR+ E
Sbjct: 1014 LVVDNGEEAVAAWER----HTPRIIMMDVSMPVMNGHQATQMIREREK------------ 1057
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
G R +PI+ +TA + + + CL GMD Y+SKP E L ++ ++
Sbjct: 1058 --GQGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWL 1106
>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 1258
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/404 (30%), Positives = 192/404 (47%), Gaps = 50/404 (12%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E V L V DTGIG+ R+F F QAD+ST+R YGGTG+GL+IS+ L ELM G++
Sbjct: 761 EAVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEV 820
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVRAAVT 718
S+P GSTF FTA GK + + +P P +G +VVD+ AV
Sbjct: 821 GVESQPGRGSTFWFTACLGKGR---------PRRALVPKPDLRGRHMLVVDDNENARAVL 871
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L + V+ S A++ A+ + F+ +V D + G D A+ +
Sbjct: 872 VDMLTSMSFRVEAVES--GAAAVARVREVAGAKPFE----VVFLDWQMPGMDGIETARAI 925
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST-- 836
G P +++ T ++E KA + V++KP+ S++ + + L
Sbjct: 926 ----LGLGLTSPPHMIMVTAHGREEVMKAAESAGIEDVLIKPVNPSIMFDAVMRALGAAL 981
Query: 837 ---ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ AGR V + + LRG ++L+ +DN N+ VA L G VE A + K
Sbjct: 982 EGDPEEAAAGREVSDDALAS---LRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGK 1038
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A+D + + +D MD+QMP MDG ATR IR++
Sbjct: 1039 IAVDMVMAAP-YDMVLMDMQMPVMDGVAATREIRRLGFG--------------------- 1076
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
LP++AMTA+ + A D C GM+ Y++KP + + L+ L K+
Sbjct: 1077 DLPVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDELFACLLKW 1120
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 103/153 (67%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
RAEAA AK+ FLA +SHEIRTPMN I+GM L L T+L+ QRDY + Q G+ L+ +
Sbjct: 605 RAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSGQHLLGI 664
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA KL +E +L +LD+V +L SEK+ KG+EL V+ VP ++G
Sbjct: 665 INDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPNDMVG 724
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
DP R QI+ N N+VKFTE G I V V LAE
Sbjct: 725 DPLRLGQILINYANNAVKFTETGEIVVAVRLAE 757
>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1407
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 182/638 (28%), Positives = 279/638 (43%), Gaps = 125/638 (19%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
+ AE KS FLA +SHEIRTPMNG I G + +
Sbjct: 672 RTLAEETSRMKSDFLANMSHEIRTPMNG-------------------------IIGMSHL 706
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
AL ++ R + +K++ NL I++D+L + S+ + +L++ S+ E
Sbjct: 707 ALNTDLTPRQRDYLKKIQQSGQ--NLLRIINDILDI----SKIEAGKLSIEHSEFELENT 760
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
L D + L+G K TE+G +++ L + V + ++L R
Sbjct: 761 LAD-------VVALIGE--KTTEKG---LELILDIASDVPVNLLGDSL----------RL 798
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED-VTLMVCVED 610
G N S +A F I+ + SED V L V D
Sbjct: 799 GQVLLNYAS------------------NALKFTEQGEIVIAVRLRERSEDQVLLYFEVRD 840
Query: 611 TGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGST 670
TGIG+ R+F PF Q D+ST+R YGGTG+GL+I + L +LM G+ S GST
Sbjct: 841 TGIGLSSEQISRLFTPFTQGDASTTRRYGGTGLGLAICRQLADLMGGEAGVNSVEGQGST 900
Query: 671 FSFTAVFGKCKEYVFEDIKQSKSEDLPPG-FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
F FTA G IK K LP +G +VVD+ V L+
Sbjct: 901 FWFTARLGTGG------IK--KRTLLPVADLRGGHVLVVDDNDNARQVMNEMLD------ 946
Query: 730 KMSSSIKDASSTAKNGLTSSE--DKFQPDIILVEKDCW----ISGEDSGFNAQLLDWKPN 783
MS S+ D +++A +T+ E D+ + LV D W ++G D+ Q L
Sbjct: 947 GMSFSV-DVANSAIEAITAIELADRQRDPYKLVFMD-WHMPTMNGIDACNKIQSLP---- 1000
Query: 784 GHVFKLPKLILLATNISKDEC-DKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
P ++L T +DE A+ G D V++KP+ AS + +V+ E +
Sbjct: 1001 ---LTAPPHLVLVTAYGRDEVFHNAENAGIRD-VLVKPVTASTLFDTAIRVIGAEREDLH 1056
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
VP + + G +IL+V+DN N+ +A L++ V+ A + AL+ L+
Sbjct: 1057 ISCVPTQPAEDMNTISGARILLVEDNEFNQQIAMELLQQMHLAVDLAENGAEALNLLEK- 1115
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
+ +D MD+QMP MDG AT +R+ A LP++AMTA
Sbjct: 1116 NNYDLVLMDMQMPVMDGISATLELRRQARFA--------------------ELPVVAMTA 1155
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+V+ A CL GM+ ++SKP E E L++ L K+ +
Sbjct: 1156 NVLQADRQRCLDAGMNDFLSKPIEPELLWQTLLKWITA 1193
>gi|381159267|ref|ZP_09868500.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880625|gb|EIC22716.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1354
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 197/399 (49%), Gaps = 39/399 (9%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTGIG+ + ++F F QAD+STSR YGGTG+GL ISK L +LM G++ S
Sbjct: 745 LRFAVRDTGIGLTQAQMGKLFHSFQQADTSTSRKYGGTGLGLVISKNLAKLMGGEVGVKS 804
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE-KPVRAAVTQYHL 722
G+TF F+A G + + S + P +G +VVD+ R A+T+ L
Sbjct: 805 EFGQGATFWFSARVGLPQ-------RDSPARSPPIDLRGRHLLVVDDNNSARQALTEM-L 856
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
N +G +V +S ++ A ++E ++L + + G D+ + L +P
Sbjct: 857 NNMGFVVGDCAS--GTAALATLRRAAAEHTPYEAVLLDAQMPDLDGLDTAVAIRQLGLEP 914
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
P L+LL+T + A A GF + V++KP+ S++ L + +N
Sbjct: 915 ------CPHLLLLSTYGRDEAMRDAGAAGFFN-VLIKPVNPSLLLDNLMRAFGLDNAPLG 967
Query: 843 GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP 902
P + G +IL+V+DN +N+ VA ++ G V+ A + + A+ K+Q
Sbjct: 968 VAPFPQACGLDLTAIAGARILLVEDNDLNQQVAMELMQGAGLVVDLAENGQEAVAKVQE- 1026
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
+DA MD+QMP MDG AT+ IR++ A+ LPILAMTA
Sbjct: 1027 QSYDAVLMDMQMPVMDGIAATQAIRRLPQCAD--------------------LPILAMTA 1066
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+V+ + GM+ +++KP + +NL+ L ++ K +
Sbjct: 1067 NVLAQDRERSAAAGMNAHIAKPIDPDNLWCTLIEWIKPR 1105
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 97/153 (63%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE +S FLA +SHEIRTPMN +LGM L L T+LS Q+DY + Q G+ L+ +I
Sbjct: 586 AEQTAKTESAFLANMSHEIRTPMNAVLGMAHLALMTELSPRQQDYIRKIQQAGQHLLGII 645
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N ++ +KIEA KL +E F+L +LD+V ++ +EK+ KG+E ++ VP +LGD
Sbjct: 646 NNIMVFSKIEAGKLVVEHTNFDLHKVLDNVATIIAEKAAAKGLEFIFRIAPDVPLHLLGD 705
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
P R Q++ N NSVK T+ G + ++V L ER
Sbjct: 706 PLRIGQVLVNYCSNSVKLTDAGEVEIEVTLLER 738
>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
Length = 1117
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 182/396 (45%), Gaps = 52/396 (13%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGIP AQ R+F F Q D+ST+R YGGTG+GL+IS+ L ELM G++ S
Sbjct: 636 VRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGR 695
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F T QS + PP G + +VVD+ PV V + L G+
Sbjct: 696 GSRFWITLPLELLA-------PQSAA---PPDLSGHRVLVVDDNPVNCDVIERQLRAFGV 745
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786
V + DA S LT + P ++ +V+ + ++++ +
Sbjct: 746 EVH---ACLDAGS-GMGELTRAAAMGTPWEVAVVDSQMPVV-----TGSEMVRM-----I 791
Query: 787 FKLPKLI---LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
+P L ++ T+ D+ D + KPLR S + + +VL A
Sbjct: 792 HAIPMLAGTRIVVTSSQGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTGP--AE 849
Query: 844 RGVPNGSSFHQGLLRGKK--ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
R + + K+ ILV +DN VN+ VA G L+K G TV+ AL+ ++
Sbjct: 850 RPADHAEEYKASEPAAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRL 909
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D MD+QMPEMDG EATR IR + A + +PI+AMT
Sbjct: 910 -LPYDVVLMDVQMPEMDGLEATRAIRALPLAAAQ-------------------VPIVAMT 949
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+ + C GMDGY+SKP + L LAK+
Sbjct: 950 ANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 985
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+++E K AEA + KS+FLAT+SHEIRTPMNG++GM LLLDT LS QR +A+T +
Sbjct: 464 RQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRD 523
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G++L+ +IN++LD +K+EA KL+L+ F L +++ V+ + + ++ KGIE+A +
Sbjct: 524 SGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDP 583
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE----RTMVKTDAKD 536
++ V DPGR RQ++ NL GN+VKFTE+G + ++V L + M + D +D
Sbjct: 584 RLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMARFDVRD 638
>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 923
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/406 (30%), Positives = 197/406 (48%), Gaps = 53/406 (13%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
II + A + ++ ++DTGIGIP Q +F F QAD ST+R YGGTG+GLSIS
Sbjct: 414 IITVSADQINATKTEIVFAIKDTGIGIPEEVQPHLFEAFKQADGSTTRKYGGTGLGLSIS 473
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K +V LM G I F SRP+ GSTF FT E + ++P K +VV
Sbjct: 474 KRIVNLMGGNIWFRSRPEDGSTFFFTITPNVAVETSLIEF------EIPQELKNKPVLVV 527
Query: 709 DEK-PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
D+ VR+ + +Y L + G +S+ A K +D+F+ II + K ++
Sbjct: 528 DDNFAVRSVLVRY-LKQFGF---QPTSVASAEEAIKIIEDRKDDQFKLLIIDL-KLPGMN 582
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
G+++ ++ + +LP L++ AT ++ KA+ + +I KPL+ + +
Sbjct: 583 GDEAS-----IEIRKTYSKEELPILMITATELNS-ALSKAQNAQI-NRMISKPLKQATLF 635
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFH-----QGLLRGKKILVVDDNGVNRMVAAGALKKF 882
+ + G VP S+ + + ++L+V+DN +N+ VA L+
Sbjct: 636 NSIMETF--------GYDVPKEYSYEPSKPIKDEFKSFRLLLVEDNPINQQVAEQILEPT 687
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G + A + A+ +Q +D MDIQMPEMDG+EAT IR N+ M
Sbjct: 688 GIEISSAPNGAEAVRMVQEA-GYDIVLMDIQMPEMDGYEATTIIR------NDLKMK--- 737
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE 988
LPI+AMTA + ++C+ GMD Y+ KP ++E
Sbjct: 738 -----------ELPIIAMTAHAMRGDKEKCIASGMDDYIPKPIDKE 772
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 8/225 (3%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AEAA +KS+F+A VSHEIRTPMN I+GM L ++TDLSS QR++ + GK L+
Sbjct: 267 KDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDLSSKQREFIKIIISSGKVLL 326
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
LIN++LD +KIEA KL LE V FNL ++ D+ LF E+ EL + + VP+ +
Sbjct: 327 RLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRPGVPQRI 386
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R RQ++ N+ N+ KFT +G I + V + KT+ ++ + G+
Sbjct: 387 IGDPLRLRQVLVNITANAFKFTSKGEIIITVSADQINATKTE-----IVFAIKDTGIGIP 441
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASN 596
Q + + ADG + K+ G + I+N+M N
Sbjct: 442 EEVQPHLFEAFKQADGSTTR---KYGGTGLGLSISKRIVNLMGGN 483
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 22/144 (15%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS--PHCFDACFMDIQM 914
L+ K +LVVDDN R V LK+FG ASA+ A+ ++ F +D+++
Sbjct: 519 LKNKPVLVVDDNFAVRSVLVRYLKQFGFQPTSVASAEEAIKIIEDRKDDQFKLLIIDLKL 578
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
P M+G EA+ IR+ SK LPIL +TA +++ +
Sbjct: 579 PGMNGDEASIEIRKTYSKE--------------------ELPILMITATELNSALSKAQN 618
Query: 975 CGMDGYVSKPFEEENLYRELAKFF 998
++ +SKP ++ L+ + + F
Sbjct: 619 AQINRMISKPLKQATLFNSIMETF 642
>gi|350553739|ref|ZP_08922902.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349790034|gb|EGZ43960.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 918
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 127/196 (64%), Gaps = 11/196 (5%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+++ + ++L ++AE A+ AKS+FLA +SHEIRTPMNG++GM LLLDT L +TQR Y
Sbjct: 363 RLQAAIKQAEDLTLQAERANAAKSEFLANMSHEIRTPMNGVIGMTTLLLDTALDATQRHY 422
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A T + ++L+ L+N++LD +K+EA KL+LE + ++ ++D+V+S + ++ K +EL
Sbjct: 423 ADTVKKSAESLLGLLNDILDFSKVEAGKLDLEHLELDIATLVDEVISAQAVRAYEKNLEL 482
Query: 480 AVFVSDKVPEFVL-GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538
+ D V L GDPGR RQI+ NLVGN++KF+ERG + V+V L E+ + E
Sbjct: 483 LCVLDDDVLSLALSGDPGRLRQILNNLVGNAIKFSERGEVVVRVQLLEKRAATARLRFE- 541
Query: 539 LLNGGTEEGVCRSGTG 554
VC +G G
Sbjct: 542 ---------VCDTGIG 548
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 189/414 (45%), Gaps = 38/414 (9%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ ++ + + VC DTGIGI +F F Q D+ST+R YGGTG+GL+I K
Sbjct: 526 VQLLEKRAATARLRFEVC--DTGIGIAADKVPLLFEKFSQVDASTTRRYGGTGLGLAICK 583
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LVELM G I S+ GS F F+ + D+ + + + + +VVD
Sbjct: 584 QLVELMGGTIGVQSQEGQGSVFWFSVPLT-----LNIDVPRPHAAHATENLQQRRILVVD 638
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769
+ + + L + G+ ++ +A + +Q +I ++ + GE
Sbjct: 639 DNATQRTLLTQRLGQWGMRAAGAADGVEALRLLYQAHKEEHEPYQAVLINLQMPV-MDGE 697
Query: 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
G + L P + L ++IL + ++D +AG A + KP+R + +
Sbjct: 698 TLG---RTLSADPQ--MQGLLRVILPSVVRAEDPQRYQQAGFHA--CLPKPIRQTALLHV 750
Query: 830 LQQVLST---ENKRQAGRGV-PNGSSFHQGLLRGK-KILVVDDNGVNRMVAAGALKKFGA 884
LQQ+ + +++ V P SS + +IL+V+DN VN+ VA G L+K G
Sbjct: 751 LQQLFAPSFDQHRMITPHTVQPVQSSHAVNFAHAQVRILLVEDNVVNQQVALGMLRKLGL 810
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
+AALD L S +D MD+QMP MDG AT+RIR +S
Sbjct: 811 QATAVNHGQAALDHL-SQADYDLILMDVQMPVMDGITATQRIR-------------AASG 856
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
D R +PI+AMTA + + + CL GM+ YVSKP L L ++
Sbjct: 857 DAFDPR----IPIIAMTAHAMPSDKEACLAAGMNDYVSKPLSLAQLTTVLTRWL 906
>gi|171060213|ref|YP_001792562.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170777658|gb|ACB35797.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1603
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 193/405 (47%), Gaps = 38/405 (9%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
VTL + V DTGIGI Q R+F F QA++ST+R +GGTG+G++IS+ LV LM G++
Sbjct: 1002 VTLQIAVRDTGIGIAAENQARIFSAFTQAEASTTRRFGGTGLGVAISQRLVALMGGELQV 1061
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P GS F F E D PP L A+VVD+ P+ V
Sbjct: 1062 ASEPGRGSRFHFCITLPVAPE------PADGPADSPPRLAALHALVVDDHPIARDVLGGM 1115
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
LG V ++ S + A + + + + +Q ++ D + G D A+ + +
Sbjct: 1116 CRSLGWQVDLAVSGEQALAL-MHAQAGAGNSYQAVLV----DWQMPGLDGWETARRI--R 1168
Query: 782 PNGHVFKLPKLILLATNISKDECDKA-KAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
G P ++++ + + ++ + G D ++KP+ ASM+ + +
Sbjct: 1169 ERGLDGAAPIVVMVTAHGRELLAQRSEREPGVLDGFLVKPVTASMLFDAIADARPAQPGP 1228
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA-KAALDKL 899
QA R H+ L G ++L+V+DN N+ VA L + GA V+ A +A +
Sbjct: 1229 QA-RARNGAVGLHR--LAGLRLLLVEDNPTNQQVARELLTQEGAIVQIANHGEEAVVAVA 1285
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ FD MD+QMP MDG+ ATRRIRQ N G + LPI+A
Sbjct: 1286 AATRPFDVVLMDLQMPVMDGYTATRRIRQ----------NLGLT----------RLPIVA 1325
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
MTA+ + + CL GMD +V KPF+ ++L + L + P S
Sbjct: 1326 MTANAMSTDREACLAAGMDDHVGKPFDIDHLVQVLRRQAGLAPSS 1370
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 105/174 (60%)
Query: 357 HIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ 416
H V D + Q + AEAA AKS+FLA +SHEIRTPMN ILGMLALL T+L+ Q
Sbjct: 827 HTVGFRIDITEFQRAREAAEAASRAKSEFLANMSHEIRTPMNAILGMLALLHKTELAPRQ 886
Query: 417 RDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKG 476
DY + ++L+ L+N++LD +K EA ++ LEA F + +L D+ + S K
Sbjct: 887 ADYVAKTEGAARSLLRLLNDILDFSKAEAERMVLEARPFRIDQLLRDLSVILSANIGGKE 946
Query: 477 IELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
+E+ + +P ++GD R +Q++ NL GN++KFT G + V V + ER+ +
Sbjct: 947 VEVLFDIDPTLPRALVGDAMRLQQVLINLGGNAIKFTAEGEVVVSVAVRERSAL 1000
>gi|392408688|ref|YP_006445295.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621824|gb|AFM23031.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1109
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 182/397 (45%), Gaps = 49/397 (12%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGIP Q+ VF F QADSSTSR YGGTG+GL+IS LVELM G I
Sbjct: 615 VLLHFKVSDTGIGIPRQKQKTVFCAFEQADSSTSRTYGGTGLGLAISSQLVELMGGNIWV 674
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P GS F+F E + S+DL KG + ++VD+ A +
Sbjct: 675 ESSPGKGSVFNFRIPM----EIHSAPPEIPVSQDLRT-LKGTRVLIVDDN----ATNRRI 725
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L L I M S D TA L P +V DC + D ++ +
Sbjct: 726 LVELLIQWGMIPSAVDNGRTALKTLRERYKMGTP-FAMVLVDCMMPEMDGFQVSEAIKAI 784
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
P +I+L + + +K +A G +T ++KP+ S + + + ++LS
Sbjct: 785 PE---LASTHIIMLTSALPDYSAEKCRAAGI-ETCLLKPIHKSNLYSAIHELLS------ 834
Query: 842 AGRGVPNGSSFHQGLLRGK-------KILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
G + SS + R +IL+ +DN N+ VA+G L G ++ +
Sbjct: 835 ---GAKSDSSLEETARRKVRKTERPLRILLAEDNAFNQKVASGMLSGMGHSISVVPNGAE 891
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A++ + FD MD+QMP MDGFEAT IR E NG +
Sbjct: 892 AVEAY-TRGGFDVILMDVQMPLMDGFEATAAIRAFEK-------NGAPRI---------- 933
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
PI+AMTA + + CL GMDGYV+KP E L+
Sbjct: 934 -PIVAMTAHAMAGDRERCLNAGMDGYVAKPISSEELF 969
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 106/153 (69%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D ++ E K +AE AD++KS+FLA +SHEIRTPMN I+GM L +T+L+ QR+Y QT
Sbjct: 447 DVTELAEAKRQAEQADLSKSRFLANMSHEIRTPMNAIIGMAELAQNTELTPVQREYIQTI 506
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
+ G +L+A+IN++LD +KIEA KL++ V +L + + + ++ KG+EL +
Sbjct: 507 ETSGHSLLAIINDILDFSKIEAGKLQISFVGLSLTDCVCGSVHSLASQAHAKGLELVCRI 566
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
+ +P+ ++GDP R RQII NLVGN++KFT +G
Sbjct: 567 APGIPDHLIGDPERIRQIIINLVGNAIKFTHKG 599
>gi|377811302|ref|YP_005043742.1| hypothetical protein BYI23_D007090 [Burkholderia sp. YI23]
gi|357940663|gb|AET94219.1| hypothetical protein BYI23_D007090 [Burkholderia sp. YI23]
Length = 1311
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 187/413 (45%), Gaps = 41/413 (9%)
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
S E V + + V D+GIGI R+F F QA++STSR YGG+G+GL ISK LV +
Sbjct: 727 SAAPEETVRVRIAVSDSGIGISEEQLGRIFEGFTQAEASTSRRYGGSGLGLVISKRLVAM 786
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVR 714
M Q+ SR GS F F G D P G ++ D+ +
Sbjct: 787 MGSQLEVESRLGEGSRFWFDITLGVDT----ADAPARNQRAFPD--HGAHILIADDNAIA 840
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774
+ + LG + +S +A + + S+ DI L+ D + G D G N
Sbjct: 841 GEILSRTVRSLGWHADVVTSGTEAVARIADAAHSAAPY---DIALL--DWRMPGLD-GLN 894
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKD---ECDKAKAGGFADTVIMKPLRASMIAACLQ 831
A NG V P L+LL T S++ E + A FA + KP+ + A ++
Sbjct: 895 AAKQVSAMNGRV--APPLVLLVTAFSREVLRESQEHGAAPFAG-FLTKPVTPKQLVAAIR 951
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L + P + + L G +LVV+DN +NR VA G L+ GA V A S
Sbjct: 952 ASLPSHAAPALHETQPVAARAQR--LEGLALLVVEDNALNRQVAEGVLRAEGANVTLAES 1009
Query: 892 AKAALDKLQSPH-CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ +D++ + FDA MD+QMP++DG EATR IR S D
Sbjct: 1010 GREGVDRIMAAQGSFDAVLMDVQMPDLDGLEATRLIR------------ADSRFDA---- 1053
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
LPI+AMTA+ A D CL+ GM+ +V KP + E L L + P+
Sbjct: 1054 ----LPIIAMTANASGADRDACLQAGMNDHVGKPIDVERLVAVLRAQIERAPM 1102
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E ++H ++ K +A+AA AKS FLA +SHEIRTPMN +LGML L+ T L Q DY
Sbjct: 559 QYELEYH-LRNAKEQADAASAAKSTFLANMSHEIRTPMNAVLGMLHLVQMTSLDHRQHDY 617
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A K+L++L+N++LD +KIEA KL+L++ F +++++ + S K +E+
Sbjct: 618 VSKAVTAAKSLLSLLNDILDYSKIEAGKLQLDSHPFEPEKLMEELGIVLSGNQGAKDVEV 677
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
+ +P ++GD R +Q++ NL GN++KFT G I V VH
Sbjct: 678 LFDLDPSLPAVLVGDSFRLQQVLINLAGNALKFTSAGQIVVSVH 721
>gi|424885547|ref|ZP_18309158.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393177309|gb|EJC77350.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 1131
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 110/156 (70%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 580 ELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 639
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 640 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 699
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V
Sbjct: 700 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV 735
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 186/429 (43%), Gaps = 64/429 (14%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ A+ GG ++ + +EDT IGIP E VF F Q D+S++R + GTG+GL+I+
Sbjct: 735 VGFQAAAGG--EIMASIRIEDTDIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAITA 792
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LV+L G ++ S GS F+ F + + + LP +G + +VVD
Sbjct: 793 GLVDLFGGYLNVESEWGKGSVFTVNLPFAVAAARL-------EPKPLPINVQGARILVVD 845
Query: 710 EKPVRAAVTQYHLNRLGI----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEK 762
+ V + L+ G + + + A G+T D PD+
Sbjct: 846 DNDVNRRILTEQLSLWGFDGVAAEGGGTGLAILEAAADLGITVDAVVLDYHMPDM----- 900
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
+G D A+ L + + +LP + L + +IS E + A G A +MKP R
Sbjct: 901 ----NGADV---ARRL--RADRRFAELPIIFLTSMDISGTEKEFAALNGQAH--LMKPAR 949
Query: 823 ASMIAACLQQVLSTENKRQAGRG-------------VPNGSSFHQGLLRGKKILVVDDNG 869
A+++ + +V+ +QA P + Q +LV +DN
Sbjct: 950 ANVLRNTVVEVVRASRVKQASEAEIARLQAQAAAPVPPPAPAPQQRAAEFVDVLVAEDNE 1009
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
VN++V L+ G + A+ + A+ + H MD+ MP M+G +AT+ IR+
Sbjct: 1010 VNQIVFNQILQGTGLSFLVVANGEEAVAAWER-HTPRIIMMDVSMPVMNGHQATQTIRER 1068
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
E G R +PI+ +TA + + + CL GMD Y+SKP E
Sbjct: 1069 EK--------------GQGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPEL 1110
Query: 990 LYRELAKFF 998
L ++ ++
Sbjct: 1111 LEEKIRQWL 1119
>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
Length = 1626
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 189/394 (47%), Gaps = 45/394 (11%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
+E VT+ + D+GIGI ER+F F QA+SSTSR +GGTG+GL+ISK LVELM GQ
Sbjct: 1047 AESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQ 1106
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ S+ VGS F F F +++ + DL G + +VVD+ + +
Sbjct: 1107 LQVTSKVGVGSRFWFDLTFPVM------EVEANPRADL----SGYRILVVDDNQITTEIL 1156
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQL 777
L+ G +V+ +S A K +++ Q D++L++ W + G A++
Sbjct: 1157 SKILSDYGCVVETASGGYQAIEKVKQATANAQ---QFDVVLMD---WRMPDIDGLQTAEM 1210
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
L G L ++ + E F + + KP+ + ++A + + E
Sbjct: 1211 LKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFVN-FLTKPVTSQILAEAVLNAI--E 1267
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
K P Q LL G +LVV+DN +NR V L GATV A +
Sbjct: 1268 GKTMDANPKPRS----QRLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVT 1323
Query: 898 K-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ L S FDA MD+QMP++DG EATRRIR DG + LP
Sbjct: 1324 QVLDSGDMFDAVIMDMQMPDIDGLEATRRIR----------------ADGRFDQ----LP 1363
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
ILAMTA+ A ECL+ GM+ +VSKP + + L
Sbjct: 1364 ILAMTANASQADKQECLEAGMNAHVSKPIDMQQL 1397
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 118/213 (55%), Gaps = 13/213 (6%)
Query: 353 GAAIHIVKVEDDFHKMQEL-------KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLA 405
G I ++ + D ++L K A+ A+ AKS FLA +SHEIRTPMN +LGML
Sbjct: 864 GHVIRVIGINIDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQ 923
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
L+ T LS Q+ Y AQ K+L+ L+N++LD +KI+A KL+L+ ++ ++ D+
Sbjct: 924 LMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLA 983
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV--- 522
+ S N +E+ + +P ++L D R +QI+ NL GN++KFT G + V +
Sbjct: 984 VVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECL 1043
Query: 523 -HLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
H AE V+ D + G +EE + R TG
Sbjct: 1044 RHEAESVTVQFSIVDSGI--GISEEQIERIFTG 1074
>gi|424896358|ref|ZP_18319932.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393180585|gb|EJC80624.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 1126
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 110/156 (70%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 575 ELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 634
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F++ ++DV +L S + K IEL V +
Sbjct: 635 GNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPD 694
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V
Sbjct: 695 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV 730
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 180/418 (43%), Gaps = 62/418 (14%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
++ + +EDTGIGIP E VF F Q D+S++R + GTG+GL+I+ LV+L G ++
Sbjct: 739 EIMASIRIEDTGIGIPTEKLETVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLN 798
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GS F+ T F + + + LP +G + +VVD+ V +
Sbjct: 799 VESEWGKGSVFTVTLPFAVAAARL-------EPKPLPINVQGARILVVDDNEVNRRILTE 851
Query: 721 HLNRLGI----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGF 773
L+ G + + + A G+T D PD ++G D
Sbjct: 852 QLSLWGFDGVAAEGGGTGLAILEAAADLGVTVDAVVLDYHMPD---------MNGADV-- 900
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
A+ L + + +LP + L + +IS E + A G A +MKP RA+++ + +V
Sbjct: 901 -ARRL--RADRRFVELPIIFLTSMDISGTEKEFAALNGQAH--LMKPARANVLRNTVVEV 955
Query: 834 LSTENKRQAGRG-------------VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALK 880
+ +QA P +LV +DN VN++V L+
Sbjct: 956 VRASRVKQASEAEIARLQAEAAVPVPPPAPVPQPRAAEFVDVLVAEDNEVNQIVFTQILQ 1015
Query: 881 KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
G + + + A+ + H MD+ MP M+G +AT+ IR+ E
Sbjct: 1016 GTGLSFLVVNNGEEAVAAWER-HTPRIIMMDVSMPVMNGHQATQTIREREK--------- 1065
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
G R +PI+ +TA + + + CL GMD Y+SKP E L ++ ++
Sbjct: 1066 -----GQGHR----VPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWL 1114
>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 765
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 113/160 (70%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++E K AE A KS FLAT+SHEIRTP+NG++GM +LLLDT+LS QR+YA+T + G
Sbjct: 374 LREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTELSDEQREYAETIDVSG 433
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+ALIN++LD +KIEA ++ELE V F LR ++++ L++ + ++R K + L V
Sbjct: 434 NLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRAREKNLSLDWQAEAAV 493
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
P V+GD R RQ++ NLVGN++KFT G + ++V + ER
Sbjct: 494 PRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVRER 533
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 102/236 (43%), Gaps = 16/236 (6%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V V DTGIGI R+F PF QAD+ST+R YGGTG+GL+I K LV+ M G + S
Sbjct: 540 LEVAVADTGIGISPGEMMRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKS 599
Query: 664 RPQVGSTFSFTAVFGKC-KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
+P GSTFSFT + V L + + +V ++ V V + L
Sbjct: 600 QPGRGSTFSFTVRLRVAPRRGVTTPAAALAVPALSEALRARRVLVAEDNEVNRRVVVHIL 659
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
+LG +NG + E LV DC + D GF A +
Sbjct: 660 KQLGF----------EPEAVENGRAAVEAFAAGTFDLVLMDCRMPEMD-GFAATRV---L 705
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
L +I + + S D+ G D + KP+ + A L++ L T N
Sbjct: 706 RDQFDALVPIIAVTASASADDSRMCLEAGMDDH-MSKPVTKDGLCAMLRRWLPTSN 760
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 22/144 (15%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
LR +++LV +DN VNR V LK+ G E + +AA++ + FD MD +MPE
Sbjct: 637 LRARRVLVAEDNEVNRRVVVHILKQLGFEPEAVENGRAAVEAF-AAGTFDLVLMDCRMPE 695
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDGF ATR +R + D L +PI+A+TA CL+ G
Sbjct: 696 MDGFAATRVLRD--------------------QFDAL-VPIIAVTASASADDSRMCLEAG 734
Query: 977 MDGYVSKPFEEENLYRELAKFFKS 1000
MD ++SKP ++ L L ++ +
Sbjct: 735 MDDHMSKPVTKDGLCAMLRRWLPT 758
>gi|167629693|ref|YP_001680192.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
Ice1]
Length = 940
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 108/151 (71%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
KVRAE A +AKS FLA +SHEIRTPMNGI+GM LLL T L+S Q DYAQ Q + L+
Sbjct: 537 KVRAEEASLAKSSFLAMMSHEIRTPMNGIIGMNELLLGTRLTSEQLDYAQAVQESAELLL 596
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +K+EA K+ELE++ F+ ++D V L K+R KG+ ++ F++D+
Sbjct: 597 TVINDILDYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLF 656
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
GDPGR RQ++ NLV N+VKFTERG I ++V
Sbjct: 657 QGDPGRLRQVLLNLVSNAVKFTERGTIDIRV 687
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 25/261 (9%)
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
S+ GS+ VT+ V DTGIGI ++ +F PF Q ++S +R YGGTG+GL+IS+ LVEL
Sbjct: 691 SDTGSQ-VTIRFEVIDTGIGIAPEIRDCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVEL 749
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK--QSKSEDLPP----------GFKG 702
M G+I S+P GSTF FT K + + +S+ LPP G +
Sbjct: 750 MGGKIGVQSKPGEGSTFWFTLPVRKPLQTSQSPVHAAESRQAPLPPPVSLTSARPTGLRQ 809
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762
+VV++ PV + L ++G+ V+++SS G + + + + L+
Sbjct: 810 ASVLVVEDNPVNQKLVTALLRKMGLSVRLASS----------GFEAIDALGEEEYALILM 859
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
DC + + Q++ +P + + A ++ D +AG D + KP+
Sbjct: 860 DCQLPDLNGFETTQVIRDSEAETGQHIPIIAMTALSMQGDREKCLQAG--MDDYVSKPID 917
Query: 823 ASMIAACLQQVLSTENKRQAG 843
+ A L + LS + G
Sbjct: 918 RKQLTAVLARWLSVSADEETG 938
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 26/183 (14%)
Query: 817 IMKPLRASMIAACLQQVLSTENKRQAGRGVP-NGSSFHQGLLRGKKILVVDDNGVNRMVA 875
+ KPL+ S Q + RQA P + +S LR +LVV+DN VN+ +
Sbjct: 772 VRKPLQTS------QSPVHAAESRQAPLPPPVSLTSARPTGLRQASVLVVEDNPVNQKLV 825
Query: 876 AGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANE 935
L+K G +V A+S A+D L + MD Q+P+++GFE T+ IR E++ +
Sbjct: 826 TALLRKMGLSVRLASSGFEAIDALGEEE-YALILMDCQLPDLNGFETTQVIRDSEAETGQ 884
Query: 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
H+PI+AMTA + ++CL+ GMD YVSKP + + L LA
Sbjct: 885 ------------------HIPIIAMTALSMQGDREKCLQAGMDDYVSKPIDRKQLTAVLA 926
Query: 996 KFF 998
++
Sbjct: 927 RWL 929
>gi|383789600|ref|YP_005474174.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
gi|383106134|gb|AFG36467.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
Length = 1509
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 108/149 (72%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+ ++A+ AKSQFLA +SHEIRTPMNG++GM LLLDTDL+ QR YA+ + G+AL+ L
Sbjct: 855 QVQSANAAKSQFLANMSHEIRTPMNGVIGMTGLLLDTDLNPEQRRYAEAVRTSGEALLTL 914
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN+VLD +KIEA KLELE + FNL I+D+V + + ++ K +EL + + + P + G
Sbjct: 915 INDVLDFSKIEAGKLELEQLDFNLLNIVDEVCEMLAIRAHEKNLELILQIDPQTPWMLHG 974
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKV 522
DP RFRQI+ NLV N++KFT G + +++
Sbjct: 975 DPTRFRQILVNLVSNAIKFTHEGEVTLRI 1003
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 187/410 (45%), Gaps = 49/410 (11%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
I +AS+ G + L V+DTGIGIP +F PF Q D ST+R YGG+G+GLSISK
Sbjct: 1003 ITPVASDSG---IMLRCEVQDTGIGIPEERLGNLFSPFTQLDGSTTRTYGGSGLGLSISK 1059
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LV ++ G+I S P VGSTF F S+ + P G+ +++D
Sbjct: 1060 QLVRMLGGKIGVRSTPGVGSTF--------WFTAAFHAAATSQPQLDPAPLAGIHILIID 1111
Query: 710 E--KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
+ RA V Q L G++ ++ + A + + IIL + +
Sbjct: 1112 PNTRVRRALVGQ--LEHWGVICTEAADVLQALQRIRR---DHDSDIIYRIILAAQGLF-- 1164
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
QL +P+ + L ++ S+D + A + KP+R +
Sbjct: 1165 --SRNLLRQLHSAEPDARLVALSRI-----GRSRD-SEHAVDIDPPPHRLDKPIRIRQLY 1216
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
+ L+ + E A R + + ++LV +D +N+ VA L+K G +
Sbjct: 1217 SALRSAM--EPDFDAPRQPTATPAVRTQRGKPVRVLVAEDAPINQDVALAMLEKLGCRAD 1274
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A+ L L++ +D MD QMP MDG+EATRRIR ++ +++N G
Sbjct: 1275 AVANGAEVLTALET-IPYDLVLMDCQMPVMDGYEATRRIR-----SSNRVLNPG------ 1322
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+PI+AMTA + ++CL CGMD YV KP + + + R + +
Sbjct: 1323 -------VPIIAMTAYALAGDREKCLACGMDDYVPKPIDAQEIARIINSY 1365
>gi|386394368|ref|ZP_10079149.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385735246|gb|EIG55444.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1526
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 218/474 (45%), Gaps = 79/474 (16%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ E K AE A AKS+FLA +SHEIRTP++GI+GM LLL D + QR Y ++ Q
Sbjct: 1118 ELLEAKRTAEDASQAKSEFLANMSHEIRTPLSGIIGMTDLLLGADPNERQRLYLESIQES 1177
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
+L+A+IN++LD +KIEARKLEL+ F+L I+D L F + KG+ L FV
Sbjct: 1178 ADSLMAIINDILDFSKIEARKLELQEQPFDLAQIMDATLKGFKPLAEKKGLALTTFVHSG 1237
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP T+L G+ V+ + + V+L + T GG +
Sbjct: 1238 VP--------------TDLFGDPVRLKQ-----ILVNLVGNAIKFTS-------KGGVD- 1270
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSED----- 601
+ GT L D N + K +NG D
Sbjct: 1271 --IQVGT--------LNLPDEMNIFPK-------------------RPTNGPPPDDASRV 1301
Query: 602 --VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
V L+ V DTGIGIPL Q+ +F F Q D T + Y GTG+GLSI+K L+ +M G I
Sbjct: 1302 SRVRLLFSVRDTGIGIPLKNQQSIFGMFSQGDVGTKKQYAGTGLGLSITKSLITMMDGNI 1361
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
VS+ GSTF + +V K + K + E P + LK ++ ++ P+ Q
Sbjct: 1362 WVVSQEGKGSTF-YCSVLLKIQNQ--HGSKTTTEEAAPAPGRPLKILLAEDNPINRLFLQ 1418
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L G +K + ++A +N + F D++L+ D + G D + +
Sbjct: 1419 ELLRNDGHTIKPAVDGQEALEALQN------EAF--DLVLM--DISMPGMDGIEATRRIR 1468
Query: 780 WKPNGHV-FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+ + K+P + L A +DE KAG D + KP+ + + L +
Sbjct: 1469 GSVSDKIDAKIPIIALTAHAFREDEERFLKAG--MDGYLSKPIDPAKLRKILNK 1520
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM 917
R KIL+ +DN +NR+ L+ G T++ A + AL+ LQ+ FD MDI MP M
Sbjct: 1400 RPLKILLAEDNPINRLFLQELLRNDGHTIKPAVDGQEALEALQN-EAFDLVLMDISMPGM 1458
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DG EATRRIR GS D + + +PI+A+TA + LK GM
Sbjct: 1459 DGIEATRRIR-------------GSVSD----KIDAKIPIIALTAHAFREDEERFLKAGM 1501
Query: 978 DGYVSKPFEEENLYRELAKFFKSKP 1002
DGY+SKP + L + L K+ KSKP
Sbjct: 1502 DGYLSKPIDPAKLRKILNKYAKSKP 1526
>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1426
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 105/151 (69%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AEAA+ AKS+F+A +SHEIRTPMNG++GM +LLDT LS QRD +T + G AL+
Sbjct: 771 KREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGILLDTPLSELQRDCVETIRNSGDALL 830
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIE+ KLELE FNLR ++ L L + K+ KG+ELA PE +
Sbjct: 831 MIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLAPKAAEKGLELAYIFDPNTPETI 890
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
LGD R RQI+ NL+GN +KFTE+G + V V
Sbjct: 891 LGDVTRLRQILVNLIGNGIKFTEKGEVVVNV 921
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 185/410 (45%), Gaps = 52/410 (12%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
T+ V DTGIGI ++++F F Q DSST+R YGGTG+GL ISK L +LM G+IS
Sbjct: 936 TIEFAVTDTGIGIAPERKDKLFKAFSQVDSSTTRQYGGTGLGLVISKRLTQLMGGEISVD 995
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
S+ GSTF FT F + + + + ++VD+ +
Sbjct: 996 SQQGKGSTFKFT-----ITAEAFHSSTLAWEKYIITHLANKRVLIVDDNQTNRKILILQT 1050
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
G++ S + A G T F I+ D + D AQ+L P
Sbjct: 1051 QSWGMIPTAVDSGQKAIEIIAQGET-----FDLAIL----DMQMPSLDGVMLAQILRQYP 1101
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+G LP LILL++ ++ K F+ T + KP+ + + L Q L T+ K
Sbjct: 1102 SGK--NLP-LILLSSAGQLLPIERLKV-DFSST-LSKPIHQTQLYNALVQALQTQTKITL 1156
Query: 843 GR-GVP-NGSSFHQ----GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
R VP NGS + G +IL+ +DN VN+ V L++ + A+ +
Sbjct: 1157 DRPSVPENGSILSKYKDLGQQHPLRILIGEDNAVNQKVIQQILQRMSYRADLVANGLEVI 1216
Query: 897 D--KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
KLQS +D MDIQMPEMDG E TR I Q + G+ R
Sbjct: 1217 QALKLQS---YDVVLMDIQMPEMDGLETTRWITQTYHQ-------------GSRPR---- 1256
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLS 1004
I+AMTA+ + + CL GMD Y+SKP N++ S+P++
Sbjct: 1257 --IIAMTANAMQGDQEHCLAAGMDDYLSKPI---NIFALAEALQNSQPIT 1301
>gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1075
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 117/156 (75%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+QE K +AEAA+ AKS FLA +SHEIRTPMN ILGM LL ++DL+S Q +T G
Sbjct: 685 LQEQKEQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRESDLTSRQHWCVETLNRSG 744
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
++L++LIN++LD +KIEA +L LE V+F+L ++ DV SLF ++++KG+ L ++ +
Sbjct: 745 ESLLSLINDILDLSKIEAERLTLEHVVFDLVQLVGDVCSLFGYEAQSKGLALKHHIAPTL 804
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
P +V+GDP R RQI+ NLVGN+VKFT++GH+ V+++
Sbjct: 805 PRYVVGDPIRLRQIMMNLVGNAVKFTKQGHVSVELN 840
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 9/238 (3%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D L + DTGIG+ + Q +F PF QADSS +R +GGTG+GL+I LV LM G++
Sbjct: 844 DGRLSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEMQ 903
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKS-EDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GS F F + ++ D+ + L++ P+ V
Sbjct: 904 LESTLGEGSCFHFELELPAAPPGAESVVGTPRTLADVASALR-LESAAHHNDPI-LVVDD 961
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QL 777
NR+ + V + + + A+NGL + Q LV D + D G+ A Q+
Sbjct: 962 AEDNRMLVNVFLKKT-RYTLVMAENGLEAVNAFKQQPFALVLMDIQMPLMD-GYEATRQI 1019
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
W+ + P + L A +S++ +AG D + KP+R S + L +VL+
Sbjct: 1020 RQWEQQKGSGRTPIIALTAHALSEESQQILEAG--CDIHLTKPIRKSKLLEVLAEVLA 1075
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
ILVVDD NRM+ LKK T+ A + A++ Q P F MDIQMP MDG+
Sbjct: 956 ILVVDDAEDNRMLVNVFLKKTRYTLVMAENGLEAVNAFKQQP--FALVLMDIQMPLMDGY 1013
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
EATR+IRQ EQ G + PI+A+TA + + L+ G D +
Sbjct: 1014 EATRQIRQW-----EQQKGSGRT------------PIIALTAHALSEESQQILEAGCDIH 1056
Query: 981 VSKPFEEENLYRELAKFF 998
++KP + L LA+
Sbjct: 1057 LTKPIRKSKLLEVLAEVL 1074
>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1727
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 132/211 (62%), Gaps = 11/211 (5%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVE------DDFHKMQELKVRAEAADVAKSQFLATVSHE 392
FL + VG L+ A + +V+ D ++E ++ AE A AKS+FLAT+SHE
Sbjct: 938 FLEDVASQVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHE 997
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMN ++GM LLLD +L+ QRD+ +T + G AL+ +IN++LD +KIE+ KLELE
Sbjct: 998 IRTPMNAVIGMTGLLLDMNLNPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEH 1057
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
F LR +++ L L S ++ KG+ELA V PE ++GD R RQ++ NL+ N+VKF
Sbjct: 1058 QPFKLRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKF 1117
Query: 513 TERGHIFVKV-----HLAERTMVKTDAKDET 538
T +G + V V + ++++ ++ K+E+
Sbjct: 1118 TNQGEVIVSVTSSLIQDSAQSLISSEEKNES 1148
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/446 (27%), Positives = 182/446 (40%), Gaps = 89/446 (19%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V+DTGIGIP R+F F Q D+ST+R YGGTG+GL+IS+ L E+M
Sbjct: 1163 VKDTGIGIPPDRMHRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEMMG----------- 1211
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
G + + V + + + S + + PP F + + ++ + +N I
Sbjct: 1212 GKMWVVSWVKPLEESSNSQSLISSITGNPPPSFD------IPRLDITGSIFYFTINSSAI 1265
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE---DSGFNA-QLLDWKPN 783
+S D T K L +I + W +G +A + + PN
Sbjct: 1266 ETSLSDEFADQLFTGKQILIVENHGINQTVITRQVKAWGMKPLVAKTGIDALKCIQENPN 1325
Query: 784 GHV----FKLP---------KLILLATNISKDECDKA----------------------- 807
+ LP K+ LL ++S++ D+
Sbjct: 1326 IDLVIIGINLPDIDEIELARKIRLLEKDLSRNHPDRQPVHLVLFNYASNTNIVKRIERTN 1385
Query: 808 -KAGGFADTVIMKPLRASMIAACLQQVL--------STENKRQAGRGVPNGSSFHQGLLR 858
GF + KPL+ S L Q+ S+ K G N H L
Sbjct: 1386 INCAGFVN----KPLKQSQFYNTLVQIFAGNEIIEHSSSLKLTDESGPLNPPQNHAAL-- 1439
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+IL+ +DN N+ VA L++ G + A + LD L+ +D MD+QMP+MD
Sbjct: 1440 --RILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDALKR-QPYDVVLMDVQMPQMD 1496
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G EA+RRI + G DG K+ I+AMTA+ + + CL+ GMD
Sbjct: 1497 GLEASRRICK----------EYGEGSDGRQKKPW----IIAMTANAMRGDREMCLEAGMD 1542
Query: 979 GYVSKPFEEENLYRELAKFFKSKPLS 1004
YV+KP E L + LAK PLS
Sbjct: 1543 DYVTKPVRREELAQALAKCQPLYPLS 1568
>gi|366163023|ref|ZP_09462778.1| chemotaxis CheB/CheR fusion protein [Acetivibrio cellulolyticus
CD2]
Length = 822
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 152/565 (26%), Positives = 250/565 (44%), Gaps = 114/565 (20%)
Query: 310 FGDSFRKHKMI-----CRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364
F DSF K + RY+ S W + G GYI GA I + +
Sbjct: 267 FWDSFNKRGALQVEFRLRYND-GSYHWVRNIGHPIYDLKGEFAGYI--GAVFDISEHKSM 323
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
++ + K AEAA+ AKSQFLA +SHEIRTP+NG++GM+ L L +DL++ QRD +TA+
Sbjct: 324 MEELNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDLTLMSDLNNEQRDNLETAK 383
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
C +L+ LINE+LD +KIEA KLEL F L +L+ + + K++ + + +S
Sbjct: 384 SCVDSLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSIS 443
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGT 544
+PE+++GD R +Q++ NL+ N++KFTE G I +KV + T DE +L +
Sbjct: 444 SDLPEYIIGDQLRIKQVLNNLLSNALKFTEAGSINLKVD------INTIDNDEFILFEVS 497
Query: 545 EEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604
+ GV G+ D + F + ++ + N
Sbjct: 498 DTGV------------GIADEDMEKLFKSFSQVDNSYTRKYNG----------------- 528
Query: 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSR 664
TG+G+ +S K L+E M G I S
Sbjct: 529 ------TGLGLAIS------------------------------KRLIEKMGGSIWIKSE 552
Query: 665 PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
+GSTFSFT K + + + + Q K K L +VVD+ + V + L
Sbjct: 553 KGIGSTFSFTI---KLERGIVQSVNQFKGISNYKASKELDILVVDDDKINQTVIEGMLRG 609
Query: 725 LGIMVKMSSS----------------IKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
G VK++++ + D +G+T+++ + ++ +K+ +IS
Sbjct: 610 FGHRVKIANNGFEAINCVSEKNFDLVLMDIQMPEMDGVTATKYIRESEL---KKNNYISK 666
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFA-DTVIMKPLRASMIA 827
E + H F+LP + L A + + DK K F D I KP+ S +
Sbjct: 667 E---------ELTSEEHNFRLPIVALTAHAL---QGDKEKFLAFGMDAYISKPVIISELF 714
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSF 852
++Q++ ++ ++ + N F
Sbjct: 715 NTIEQIIKGKDDKELENLLENSKKF 739
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVVDD+ +N+ V G L+ FG V+ A + A++ + S FD MDIQMPEMDG
Sbjct: 590 ILVVDDDKINQTVIEGMLRGFGHRVKIANNGFEAINCV-SEKNFDLVLMDIQMPEMDGVT 648
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
AT+ IR+ E K N N S + T++ LPI+A+TA + ++ L GMD Y+
Sbjct: 649 ATKYIRESELKKN----NYISKEELTSEEHNFRLPIVALTAHALQGDKEKFLAFGMDAYI 704
Query: 982 SKPFEEENLYRELAKFFKSK 1001
SKP L+ + + K K
Sbjct: 705 SKPVIISELFNTIEQIIKGK 724
>gi|357403818|ref|YP_004915742.1| histidine kinase [Methylomicrobium alcaliphilum 20Z]
gi|351716483|emb|CCE22143.1| putative Histidine kinase [Methylomicrobium alcaliphilum 20Z]
Length = 1150
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 202/409 (49%), Gaps = 52/409 (12%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D L V DTGIG+ + R+F F QADSST+RH+GGTG+GL+ISK LVE+M G++
Sbjct: 548 DDQLRFSVRDTGIGLSEKQKSRIFESFTQADSSTTRHFGGTGLGLTISKHLVEMMGGELG 607
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED-LPPGFKGLKAVVVDEKPVRAAVTQ 719
VS GS F FT + S+S D +P +G +++ E + +
Sbjct: 608 VVSAEGAGSEFYFTLPLNV--------VPDSQSVDHMPAELEGWHVLLICENETACGIFE 659
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L L V + S K ++ L +D Q + LV D +S D + L+
Sbjct: 660 TMLRDLRFNVTLCSLGK---MKLQDILREHQDSEQSTLELVLLDWKMSDADKADILKALE 716
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAK--AGGFADTVIM-KP-----LRASMIAACLQ 831
G K P +I N+S E + K +G FA+ +M KP L +++ AC +
Sbjct: 717 TSAFGK--KTPIII----NVSSLEAESIKKVSGQFANITLMNKPSTPSCLMDAILNACGK 770
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+ L EN + R + F + +RG ++L+V+DN +N+ V L+ G V+ +
Sbjct: 771 EAL-IENLK--NRHDTANALFFEAAVRGIRVLIVEDNEINQEVVRKTLESAGVVVDIVNN 827
Query: 892 AKAALDKLQSPH---CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A++ L+ ++A MD+QMPEMDG+EAT +R+ +S+ ++
Sbjct: 828 GLEAVNLLRQTADEPIYNAVLMDLQMPEMDGYEATTILRK-DSRFDK------------- 873
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
LPI+AMTA I + +CL GM ++ KP + E L+ +LA++
Sbjct: 874 ------LPIIAMTAHTIESDRQQCLATGMQDHIGKPIDPEQLFSKLARW 916
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 109/173 (63%)
Query: 350 ILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLD 409
I G + + + ++ + K+ AE + AK++FLA +SHEIRTP+N I+G+ L+L
Sbjct: 371 IWEGLVMDVTARKRSEEELAKAKLAAEVSAKAKAEFLANMSHEIRTPLNAIIGLNRLVLK 430
Query: 410 TDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFS 469
++L+ QRDY Q+ + L+ +IN +LD +KIE+ KL++E V FNL A+L+++ S+
Sbjct: 431 SELNEVQRDYLHKVQLSSENLLGIINNILDFSKIESGKLDVEHVEFNLDAVLENIGSMLE 490
Query: 470 EKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ K ++L + VP ++GD R Q++TNL N++KFTE+G + + V
Sbjct: 491 PVAAEKHLDLLIDRGLGVPLCMIGDSLRLIQVLTNLCSNAIKFTEQGEVVISV 543
>gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
Length = 822
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 188/402 (46%), Gaps = 61/402 (15%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V + V DTGIGI L QE++F F QADS+TSR +GGTG+GLSIS LV M G+++
Sbjct: 469 NVFVKFVVSDTGIGIALDQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLA 528
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE----KPVRAA 716
S P GS+F FT K E E P F+G K ++ E R
Sbjct: 529 VESEPGKGSSFFFTLPLKKDPE---------APERRRPSFQGTKIGLIQEGFTLDRQRDK 579
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ ++ LG D S K L PD+ +++DC + G+ +
Sbjct: 580 NLKTYVEYLG---------ADFSVYDKKSLLRGRSGEMPDLFFLDEDC-LDGQKEL--VK 627
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
LL + K+P + L+ + +K D K+ +T+I KPL S L +
Sbjct: 628 LL-------ILKVP-ISLITSGENKKILDAIKSK--LNTLIYKPLNYSKTLRALSKYAGL 677
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
E+ G + +F R K+LV +DN +N+ + L +FG V A + + A
Sbjct: 678 ESSH--AEGFKSEMAF-----RDLKVLVAEDNPINQKLIIATLSRFGIDVAIANNGEEAF 730
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
++ + + FD FMDIQMP MDG EATR I E + D H+P
Sbjct: 731 ERRKEDN-FDLIFMDIQMPVMDGVEATRAILAYERET-----------------DSPHIP 772
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
I+A+TA+ + D+ L GMD Y++KP + L R L ++
Sbjct: 773 IIALTANAVQGNKDQYLAAGMDDYIAKPINIDRL-RNLIGYY 813
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 372 KVRAEAADVAKSQ--FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
K R A D A+++ FLA +SHEIRTP+NGI+G + LL T L+ QR++ + Q +
Sbjct: 307 KERRSALDTARAKDLFLANMSHEIRTPLNGIVGFIQLLETTPLNEEQREFIRVVQESSQN 366
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ ++N++LD +KIEA K+ELE + F+ + + ++ K+ +KGI+ AV+V +P
Sbjct: 367 LLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALHKGIDFAVYVDPALPG 426
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERG 516
+LGDP R Q++ NLV N++KFTERG
Sbjct: 427 RILGDPTRISQVLVNLVNNAIKFTERG 453
>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
Length = 802
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 200/426 (46%), Gaps = 79/426 (18%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGI + +F F Q DSST+R YGGTG+GLSISK L E+M G+I
Sbjct: 301 VRLRFQVRDTGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISKNLSEMMGGRIGV 360
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKP-VRAAVTQY 720
SR VGS F FTAVFG +E F LPPG+ K +VVD+ P VR AV Y
Sbjct: 361 ESRESVGSNFWFTAVFGLQEEESF-------YHTLPPGYFSAKVLVVDDTPSVREAVCAY 413
Query: 721 HLNRLGIMVKMSSS------IKDASSTAKNGLT-SSEDKFQPDIILVEKDCW-----ISG 768
L+ G ++ SS+ + + + NG T D+ P + D W ++
Sbjct: 414 -LSEWGCSIECSSNGPAALDVLRSQAAEGNGFTLCIVDQMMPGM-----DGWQFASEVNS 467
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
++S +L P+G S DE K K + + KP+R S +
Sbjct: 468 DESLRGIRLFLMSPSGK--------------SGDEA-KMKLLHWYHGYLSKPIRKSRLFR 512
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGL-----------LRGKKILVVDDNGVNRMVAAG 877
+ + +++++A + L L G ILV +D+ VN+ +
Sbjct: 513 EMVKCFLGDDEKEASEDEAEELERLEELSDGDAVDLVEELTGSIILVAEDHEVNQQLFKT 572
Query: 878 ALKKFGATVECAASAKAALDKLQSPHC--FDACFMDIQMPEMDGFEATRRIRQMESKANE 935
L+ FG V+ A++ K A +Q+ H +D FMD+QMPEM+G+EAT IR
Sbjct: 573 ILESFGHEVDLASNGKEA---VQATHGRRYDLIFMDVQMPEMNGYEATSAIRS------- 622
Query: 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
S +D PI+A+TA + + C GM G++ KPF++ +L L
Sbjct: 623 ------SGID---------TPIVAVTASALRGEEERCRNVGMSGFLVKPFKKRDLIPVLD 667
Query: 996 KFFKSK 1001
++ ++
Sbjct: 668 RWLGAR 673
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 120/185 (64%), Gaps = 5/185 (2%)
Query: 349 YILYGAAIHIVKV-EDDFHKMQELKVRA-EAADVA---KSQFLATVSHEIRTPMNGILGM 403
Y+++ I + K+ E + + +E RA EAA+ A KS+FLA +SHEIRTP++ I+GM
Sbjct: 113 YVVFAEDISLRKLYEQELREAKESSERAQEAAERATRTKSEFLANMSHEIRTPIHTIIGM 172
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
LL +T L Q++Y + Q L++LIN++LD +KIEA KL LE + F+L +D
Sbjct: 173 SELLSETALDPEQQEYTEQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAED 232
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
+ + S ++ KG+E V++ + VP +LGDP R RQII NL N+VKFTE+G + +++
Sbjct: 233 AVDMVSLEAHKKGLETIVYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVELRIS 292
Query: 524 LAERT 528
L +R+
Sbjct: 293 LDDRS 297
>gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 992
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 187/412 (45%), Gaps = 64/412 (15%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S++ L V DTG+G+ QE +F PF QAD S SR YGGTG+GLSIS+ LV LM G
Sbjct: 406 SQNARLRFAVRDTGVGLTAEQQEGLFRPFSQADESISRRYGGTGLGLSISQRLVALMGGD 465
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
+ S P GS F F+ + +++ + G+ +VVD+ P
Sbjct: 466 LEVRSVPGEGSEFFFSL------DLPLSEVRAKPFQSDAAALAGMGIMVVDDNP------ 513
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L I+ M S++ + +TA G E+ + + G +S LL
Sbjct: 514 ----TSLRILADMLRSMRFSVTTATGG----EEALR----------LLEGAESDVRIVLL 555
Query: 779 DWKPNG----------HVFKLPK--LILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
DWK G LP+ +++ T ++E D ++KP+ S++
Sbjct: 556 DWKMPGMDGMECARRIRALALPRPPAVIIVTAYGREEIRHNAENAGVDGFLLKPVGRSVL 615
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ + + + G + +LRG+++LVV+DN +N+ VA L++ G +V
Sbjct: 616 FDTIAMTVGPADMLKTGGAAGEREPLPE-VLRGRRVLVVEDNAINQQVARELLEQAGLSV 674
Query: 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
+ A + AL +L + + A MD+QMP MDG E RRIR + A+
Sbjct: 675 DVAGDGEHAL-RLLARERYAAVLMDVQMPVMDGLETARRIRSDPAFAD------------ 721
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP++AMTA + + L GM+ ++ KP + LY LA++
Sbjct: 722 --------LPVIAMTAHALARDREASLAAGMNDHIGKPVDPRELYAVLARWM 765
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 104/164 (63%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K+ D + L A+AAD AKS+FLA +SHEIRTP+N ++GM LLL T L+ Q DY
Sbjct: 237 KLRDSLDESIRLAELAKAADKAKSEFLARMSHEIRTPLNAVIGMSHLLLKTRLTPKQEDY 296
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ L+ +IN++LD +KIEA L +E + F+L +L DV+++ S + K +E
Sbjct: 297 LAKIRSSADTLLRVINDILDFSKIEAGGLTIERIPFDLETVLGDVVNIMSLGAAEKQLEF 356
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
+ V D VP ++GDP R Q++ NLVGN+VKFTE G + ++V
Sbjct: 357 LLSVEDDVPFGLVGDPLRLGQVLLNLVGNAVKFTESGEVLLEVR 400
>gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
Length = 1311
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 200/416 (48%), Gaps = 37/416 (8%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++ + A+ + + L V V DTGIG+ R+F F QAD ST+R +GGTG+GL+I
Sbjct: 705 VVRISATERLEDQLRLQVSVADTGIGMTDEQMARLFKAFSQADGSTTRRFGGTGLGLAIC 764
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K LVELM G IS S P GSTFSFT + G D ++ + + P ++ ++V
Sbjct: 765 KQLVELMGGTISVESTPGAGSTFSFTILVGDRG----ADGERQLARQIDP--SAIRTLIV 818
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWIS 767
++ V AV L G+ ++ D + A ++ + QP D++LV D +
Sbjct: 819 EDNAVARAVLADTLK--GLRFTDVEAVGDGPA-ALGAFAEAQLRGQPFDLVLV--DWKMP 873
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
G D A+ L K +P ++++ + + + A+ G V++KP+ SM+
Sbjct: 874 GMDGIATARRL--KELSTPGAVPSILMVTAHSRAEVVEHAREVGIL-KVLVKPVNVSMLV 930
Query: 828 ACLQQVLSTENKRQAGRGVPNG-SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATV 886
+ L A G G + + L+G ++L+V+DN +N+ +A L+ G TV
Sbjct: 931 DSIADALDAGAGAHAVTGEGRGPETVPRPALKGVRVLLVEDNEINQQIAREVLEDVGVTV 990
Query: 887 ECAASAKAALDKLQSPHCF-DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
A + AL L+ DA MD+QMPE+DG+E TR IR + A
Sbjct: 991 AIADNGMIALSMLRGNGPLPDAILMDLQMPELDGYETTRWIRSDDRLA------------ 1038
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
H+PI+AMTA V CL GM +V+KP + L L ++ ++
Sbjct: 1039 --------HIPIIAMTAHVTDDERKRCLAAGMVDHVAKPVDVRQLLDTLERWTGNR 1086
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 91/143 (63%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMNG++G+ L L ++L RDY + L+ +I+++LD +KIE
Sbjct: 571 FLANMSHEIRTPMNGVIGLSGLALKSELPEHARDYLEKINRSSLILLRIIDDILDFSKIE 630
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A ++ +EA F+L +L DV +L +++ K +E+ +P ++GDP R QI+ N
Sbjct: 631 AGQMSIEATEFDLDDVLQDVATLIADRQEQKPVEVVFSSEPDLPRTLVGDPHRLGQILLN 690
Query: 505 LVGNSVKFTERGHIFVKVHLAER 527
L+GN++KFTE G I V++ ER
Sbjct: 691 LIGNALKFTEAGEIVVRISATER 713
>gi|398343867|ref|ZP_10528570.1| multi-sensor hybrid histidine kinase [Leptospira inadai serovar
Lyme str. 10]
Length = 856
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 195/403 (48%), Gaps = 55/403 (13%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
T+ V DTGIGIP Q+++F PF Q D+S++R YGGTG+GLSIS L+++M G+I
Sbjct: 493 TIRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTGLGLSISYRLIKMMGGRIWLE 552
Query: 663 SRPQVGSTFSF--TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S G+TFSF A + K V DI PG + K +++D+ + +
Sbjct: 553 SDINKGTTFSFEIQAEGVEEKNQVVPDINY-------PGLENRKILIIDDNATNLRILSH 605
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L LG+M SSS ++A S G+ P++ L+ D +SG + AQ L
Sbjct: 606 QLQTLGLMTFSSSSKEEALSLLDLGIL-------PELALL--DYNLSGSNGVQIAQELRR 656
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
K F P LILL+++IS K AD + ++ L + L+Q+++
Sbjct: 657 KN----FLFP-LILLSSSIS-----DIKEKEIADQLFLRQLSKPVKKKELEQLVTEILIT 706
Query: 841 QAGRGVPNGSSFH----QGLLRGK---KILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+G N SS + + LL+ +L+ +DN +N +A L+K G A + K
Sbjct: 707 GTDKGKANRSSSYLEKQKDLLQSTYPFDVLIAEDNEINLSLAKRILQKLGYHPVVAMNGK 766
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
L++L+ FD MD+ MPEMDG +AT+ IR ++ +
Sbjct: 767 QVLNRLREAK-FDVVLMDVHMPEMDGIQATQVIRNTWPQSEQPY---------------- 809
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
I+AMTA + + CL+ GM+ YVSKP E L L K
Sbjct: 810 ---IIAMTAAAMQGDREICLRAGMNDYVSKPIVFEELIHALRK 849
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 105/147 (71%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLA +SHEIRTPMNG++GM LLLD+DL+ +R+YA+ Q G++L+++IN++LD
Sbjct: 341 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 400
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIE+ L LE+ F++ ++ L LF + KGI+L + VP+ ++GD R RQ
Sbjct: 401 SKIESGTLSLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDRIIGDKLRLRQ 460
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAER 527
++ NL GNS+KFTE+G +F+ ++++
Sbjct: 461 VLINLFGNSLKFTEKGEVFLSAEVSKK 487
>gi|392424058|ref|YP_006465052.1| histidine kinase,Response regulator receiver domain protein,histidine
kinase,Hpt domain-containing protein [Desulfosporosinus
acidiphilus SJ4]
gi|391354021|gb|AFM39720.1| histidine kinase,Response regulator receiver domain protein,histidine
kinase,Hpt domain-containing protein [Desulfosporosinus
acidiphilus SJ4]
Length = 772
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 198/402 (49%), Gaps = 51/402 (12%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
++DTGIGI +++F F Q DSST+R YGGTG+GL+ISK LV LMRG I F S
Sbjct: 307 IKDTGIGISQEDFQKLFQSFNQVDSSTTRKYGGTGLGLAISKELVSLMRGNIEFKSILGE 366
Query: 668 GSTFSFTAVFGKCK-----EYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
GS F F F K YVF+++ G+ +++D+ P + +L
Sbjct: 367 GSNFKFDVRFKIAKRVPDHNYVFKEL------------AGVNILIIDDNPSNRRIAISYL 414
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQLLDWK 781
+G V + +A +T + + S+ DK DI L+ D + G SGF A L
Sbjct: 415 GGMGCKVFEAKDPGEAITTIISKV-STRDKI--DIALI--DYRMPGM-SGFELATSLKAI 468
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
P KLILL + +AK GFA +I KP++ + C+ VL +++ +
Sbjct: 469 PFASDI---KLILLTSAAQSGGAKEAKQLGFAGYLI-KPIKRDDLLNCIAIVLGLKSE-E 523
Query: 842 AGRGVPNGSSFHQGL-LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ +GL R KIL+V+DN +NR + LK T + + A ++
Sbjct: 524 NNEPIVTKYVVQEGLDHRKPKILLVEDNEINRKIVTAVLKTRDITCDVVINGLDAYQAVK 583
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+D MD QMP MDG++ T +IR+ME G++K H I+AM
Sbjct: 584 KKD-YDIVLMDCQMPVMDGYKCTAKIREME---------------GSSK----HTTIIAM 623
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF-KSK 1001
TA+V+ ++C++ GMD Y+ KP +NL++ + + KSK
Sbjct: 624 TANVMEGDKEKCIQAGMDDYIGKPINFDNLFQIIESYIEKSK 665
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 4/162 (2%)
Query: 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVL 438
+++KS FLA +SHEIRTPMNGI+G L LL ++ S+ Q++Y + A+ L+ +IN++L
Sbjct: 148 NISKSLFLANMSHEIRTPMNGIMGFLELLNMSNPSTEQKEYIREAKSASAVLLYVINDIL 207
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +KIEA KL +E F R ++D +SL K+ K +EL ++ VPE V+GD R
Sbjct: 208 DFSKIEAGKLTMEESCFKTRTAIEDAVSLHVHKAFEKNLELHSMINANVPEEVIGDAQRL 267
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAER----TMVKTDAKD 536
RQ++ NL+GN+VKFTE+G I V V E ++K + KD
Sbjct: 268 RQVLNNLIGNAVKFTEKGEISVTVDCIEEEDEIALLKFEIKD 309
>gi|433772783|ref|YP_007303250.1| signal transduction histidine kinase [Mesorhizobium australicum
WSM2073]
gi|433664798|gb|AGB43874.1| signal transduction histidine kinase [Mesorhizobium australicum
WSM2073]
Length = 779
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 2/201 (0%)
Query: 322 RYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVA 381
R+ AS+ L + LF + +V + ++ ++ F + E +AEAAD A
Sbjct: 176 RHQADASSDRLLLWASGLLFAVLGIVAFWIFRPMEQAIR--RAFAQSAESLFKAEAADRA 233
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLA +SHEIRTPMNG+LGM LL T+L+ Q+ + G AL+ +IN++LD +
Sbjct: 234 KSEFLANMSHEIRTPMNGVLGMAELLAKTELNPRQKTFTDVIVKSGNALLTIINDILDFS 293
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KI A +L L+ F L ++DV +L S + K +EL V V ++P +V+GD GRFRQI
Sbjct: 294 KINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLELIVRVDPRLPAYVVGDAGRFRQI 353
Query: 502 ITNLVGNSVKFTERGHIFVKV 522
+TNLVGN+VKFTE+GH+ + V
Sbjct: 354 VTNLVGNAVKFTEKGHVLIDV 374
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
IL+ +DN VN+MV L G + A + + A++ +S H MD+ MPEM+G+E
Sbjct: 653 ILIAEDNDVNQMVFGQILNGLGLSYRIAGNGRTAVEMYRSLHP-RLVLMDVSMPEMNGYE 711
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
ATR IR +E+ +GG H+PI+ +TA + D+C++ GMD Y+
Sbjct: 712 ATRAIRAIEAS------SGG------------HIPIIGVTAHALKGDRDKCIEAGMDDYL 753
Query: 982 SKPFEEENLYRELAKFF 998
KP + L ++ +
Sbjct: 754 PKPVSPDRLGAKIGTWL 770
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L + VEDTGIGIP + VF F Q D S++R + GTG+GL+I+ LV+LM G+I
Sbjct: 383 VQLKLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGV 442
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPV 713
S GS F F + +++ +P G + +V+D+ PV
Sbjct: 443 ESEIGRGSVFWFAVPLPVHR-------AEARDAIVPVDVTGARVLVIDDNPV 487
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFG---ATVECAASAKAALDK-LQSPHCFDACFMDIQM 914
G ++LV+DDN VNR + L+ + A E A A LD+ Q D +D QM
Sbjct: 476 GARVLVIDDNPVNREILLEQLRSWSFDCAAAESGAVGLAFLDRACQLGASVDCIILDYQM 535
Query: 915 PEMDGFEATRRI 926
P M+G + R I
Sbjct: 536 PGMNGADVARAI 547
>gi|428227107|ref|YP_007111204.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427987008|gb|AFY68152.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1170
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 107/150 (71%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A KS FLAT+SHEIRTPMN +LGM LLLDTDL+ QRDY +T Q+ G AL+ LI
Sbjct: 508 AERASQLKSIFLATMSHEIRTPMNAVLGMTGLLLDTDLNPEQRDYVETIQVSGDALLTLI 567
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
NE+LD +K+EA ++ELE + FN + L++V L + + KG+E+AV+ ++P +LGD
Sbjct: 568 NEILDFSKLEAGEMELEILEFNPKDALEEVADLLAPSAHAKGLEMAVWSDPQLPPCLLGD 627
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
R RQ++ NLVGN++KFT +G + ++ L
Sbjct: 628 VSRLRQVLINLVGNAIKFTAQGEVVIRAAL 657
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 122/436 (27%), Positives = 196/436 (44%), Gaps = 65/436 (14%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+I + + L V DTGIGI AQ+R+F PF Q D+S +R YGGTG+GL+I
Sbjct: 652 VIRAALLRASASEARLEFSVSDTGIGIQPEAQKRIFQPFSQVDASMTRLYGGTGLGLAIC 711
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVF--GKCKEYVFEDIKQSKSEDLPPG-FKGLKA 705
+ L ELM G I S + GS F F G K K E L PG G +
Sbjct: 712 RQLTELMGGAIGVESEWERGSRFWVRLGFQVGVAKP------GPRKPEALDPGSLVGARL 765
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE--DKFQPDIILVEKD 763
+VVD+ + + G+ V+ ++ +A + + + ++ D D+++ E
Sbjct: 766 LVVDDNGTNRRILREQAIAWGMQVEEAAGAAEAWAMMQGAIAENQPYDAAILDMLMPE-- 823
Query: 764 CWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA 823
++GE G K + + P +++ + N S G FA +I KP++
Sbjct: 824 --MNGEMLGRQI-----KADPVLASTPLIMMTSVNQSGQRQTLLDLG-FAAYLI-KPVKQ 874
Query: 824 SMIAACLQQVLSTENKRQAGRGV----------------------PNGSSFHQGLLRGKK 861
+ + L Q ++ + ++ RG P S + K
Sbjct: 875 ARLLQSLVQAIAPKPPAES-RGAWGDPATGDRPAVGCYLESWSSSPLPSQWAMQTTTKPK 933
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVV+D+ VN+ VA L++ G + AA+ + AL L++ +D MD QMP +DG+
Sbjct: 934 ILVVEDSAVNQKVALKQLERLGYAADVAANGQEALQMLET-IPYDIVLMDCQMPVLDGYS 992
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
ATR +R E DG + H ++AMTA+ + D CL+ GMD Y+
Sbjct: 993 ATRMLRSRE--------------DG-----QRHTIVIAMTANAMTEDRDLCLEAGMDDYL 1033
Query: 982 SKPFEEENLYRELAKF 997
KP ++L R + ++
Sbjct: 1034 CKPIRIDDLGRMIDRW 1049
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 24/156 (15%)
Query: 851 SFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP----HCFD 906
+ G L G ++LVVDDNG NR + +G VE AA A A +Q +D
Sbjct: 754 ALDPGSLVGARLLVVDDNGTNRRILREQAIAWGMQVEEAAGAAEAWAMMQGAIAENQPYD 813
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
A +D+ MPEM+G R+I+ A+ ++ +SV+ + +R L
Sbjct: 814 AAILDMLMPEMNGEMLGRQIKADPVLASTPLIM-MTSVNQSGQRQTL------------- 859
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
L G Y+ KP ++ L + L + KP
Sbjct: 860 ------LDLGFAAYLIKPVKQARLLQSLVQAIAPKP 889
>gi|398379080|ref|ZP_10537225.1| PAS domain S-box [Rhizobium sp. AP16]
gi|397723547|gb|EJK84041.1| PAS domain S-box [Rhizobium sp. AP16]
Length = 1086
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 109/156 (69%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q L R+EAAD AKS+FLA +SHEIRTPMNG+LGM LL TDL + Q+ +
Sbjct: 528 ELQLLLARSEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDARQKTFIDIIVKS 587
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A ++ L F+ ++DV +L S + K IEL V + +
Sbjct: 588 GNALLTIINDILDFSKIDAGQMRLRKAAFDPAEAVEDVATLLSSPAAEKDIELLVRATPE 647
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VP VLGD GRFRQI+TNL+GN++KFTERGH+ V+V
Sbjct: 648 VPAMVLGDAGRFRQIVTNLLGNAIKFTERGHVLVEV 683
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 183/429 (42%), Gaps = 67/429 (15%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V L + VEDTG+GI + +F F Q D+S++R + GTG+GL+I+ LV+L G +
Sbjct: 692 EVMLTLRVEDTGLGISKEKLDSIFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLE 751
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTF+ +S+ +P KG + +V+D+ + + +
Sbjct: 752 VDSEWGKGSTFTVHLPMPPVA-------ARSEPRTVPVNVKGARILVIDDNEINRRILEE 804
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLT----SSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
L + G A+ K GL +SE D ++++ D
Sbjct: 805 QLQQWGFDGY-------AAEDGKTGLAILHAASEMGAPVDAVILDYHMPDMNGDEVARTI 857
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
D + F+ LI L T++ DK A +MKP+RA+++ + V+
Sbjct: 858 RADVR-----FEALSLIFL-TSMDVVGSDKEFAALNGQAHLMKPVRANVLRGTIIDVVRM 911
Query: 837 ENKRQAGRGVPNGSSFHQGL-------------------LRGKKILVVDDNGVNRMVAAG 877
+RQ G + + + +LV +DN VN++V
Sbjct: 912 A-RRQRMTGYATAVAAQLPIEAEAEAAIQAVEQDVSARPVSAIDVLVAEDNEVNQIVFTQ 970
Query: 878 ALKKFGATVECAASAKAALD---KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934
L+ G + + A+D KL+ P MD+ MP M+G +ATR IRQ+E++A
Sbjct: 971 ILQVTGLRFLVVQNGQEAVDAWLKLR-PSLI---MMDVSMPVMNGHQATRTIRQLEAEAG 1026
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
H+PI+ +TA + D CL+ GMD Y+SKP E L ++
Sbjct: 1027 LG----------------CHVPIVGVTAHALDVDRDMCLEAGMDDYMSKPISPELLEAKV 1070
Query: 995 AKFFKSKPL 1003
++ + L
Sbjct: 1071 RRWLGDEAL 1079
>gi|405382156|ref|ZP_11035978.1| PAS domain S-box [Rhizobium sp. CF142]
gi|397321644|gb|EJJ26060.1| PAS domain S-box [Rhizobium sp. CF142]
Length = 1143
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 110/156 (70%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ +L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 592 ELTQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKS 651
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +++L F+L ++DV +L S + K IEL V +
Sbjct: 652 GNALLTIINDILDFSKIDAGQMKLRKAAFDLIEAVEDVATLLSSPAAEKDIELLVRAAPD 711
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV +
Sbjct: 712 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDI 747
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 186/418 (44%), Gaps = 52/418 (12%)
Query: 595 SNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL 654
S GG ++ + + +EDTGIGIP E VF F Q D+S++R + GTG+GL+I+ LV+L
Sbjct: 752 SAGG--EIMISIRIEDTGIGIPPEKVETVFDKFSQVDASSTRRHEGTGLGLAITAGLVDL 809
Query: 655 MRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVR 714
G I S GS F+ F + + + LP +G + +VVD+ V
Sbjct: 810 FGGYIDVESEWGKGSVFTVKLPFAVAAARI-------EPKPLPINVQGARILVVDDNEVN 862
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSED-KFQPDIILVEKDCWISGEDSGF 773
+ L G + +T L ++ D + D +++ D + +
Sbjct: 863 RRILTEQLGLWG----FDGVAAEGGATGFAILEAAADLGIKVDAVVL--DYHMPDMNGAE 916
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
A+ L + + +LP + L + +IS E + A G A +MKP RA+++ + +V
Sbjct: 917 VARRL--RADSRFVELPIIFLTSMDISGTEKEFAALNGHAH--LMKPARANLLRNTVVEV 972
Query: 834 LSTENKRQAGRG----------VPNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGALK 880
+ +QA VP + R +LV +DN VN++V L+
Sbjct: 973 VRASRVKQASEAEIARLQKEIEVPPPAPAPAPQRRATDFVDVLVAEDNEVNQIVFTQILQ 1032
Query: 881 KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
G + + + A++ + H MD+ MP M+G +ATR IR+ E
Sbjct: 1033 GTGLSFLVVNNGEEAVEAWER-HTPRLIMMDVSMPVMNGHQATRLIREKEQ--------- 1082
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
G R +P++ +TA + + + CL GMD Y+SKP E L ++ ++
Sbjct: 1083 -----GQGHR----VPVIGVTAHALESDRELCLDAGMDDYMSKPISPELLEDKIRQWL 1131
>gi|420374930|ref|ZP_14874855.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 1235-66]
gi|391315046|gb|EIQ72580.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 1235-66]
Length = 888
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 159/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 253 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 312
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 313 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 372
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 373 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 420
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 421 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 452
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 453 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 482
Query: 672 SF 673
F
Sbjct: 483 WF 484
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 172/414 (41%), Gaps = 77/414 (18%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 413 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 464
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F S DL P V+ D R
Sbjct: 465 ----EMGGDISFHSQPNRGSTFWFH-----ISLDLNPN------VISDRSTTRC------ 503
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGL-----TSSEDKFQPDIILVEK---DCWISGEDSGF 773
+ K + ++ ++ A+ L T E + P + D + G F
Sbjct: 504 -----LAGKRLAYVEPNATAAQCTLDILSETPLEVIYSPSFSALPAEHYDILLLGVPVTF 558
Query: 774 NAQL-LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
+ L + + + +LLA ++ +K K GG A ++KPL ++ + L
Sbjct: 559 HEPLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALT 617
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+ + A +P+ S ++ VDDN N + L+ VE S
Sbjct: 618 EYCHL--NQGAELQLPDESKI------AMTVMAVDDNPANLKLIGALLEDKVQHVELCDS 669
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+ A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 670 GQQAMDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQ------------------ 710
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSG 1005
P++A+TA + ++ L GM+ Y++KP EE+ L+ L ++ KP +G
Sbjct: 711 --QTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHSLLLRY---KPGTG 759
>gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
684]
gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
684]
Length = 1969
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 200/436 (45%), Gaps = 58/436 (13%)
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMV--CVEDTGIGIPLSAQERVFMPFMQADSSTSR 636
+A F +N SI ++ A G E T+ + V DTG+G+ + Q +F F Q D ST+R
Sbjct: 1354 NAVKFTTNGSI-SLHAEQLGEESDTIWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTTR 1412
Query: 637 HYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
+GGTG+GL+IS+ L +LM G+I S P GS F FG+ V Q + +
Sbjct: 1413 QFGGTGLGLAISRKLTDLMGGEIGVKSEPGSGSKFWVDLPFGR----VVNRKDQHNYQPI 1468
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756
PP G + +V D+ P + Y L +L V S +A G S D
Sbjct: 1469 PP---GTRVLVADDHPEALEILVYMLTQLQCSVTAVSGGLEAV-----GAVSMADHTHTP 1520
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLA-TNISKDECDKAKAGGFADT 815
LV D W + +G +A L + PKLIL++ T++ E K GF
Sbjct: 1521 FELVLMD-WEMPKTNGLDAAQLILSEK--LTAPPKLILISGTHLKNSEI--LKKYGFIG- 1574
Query: 816 VIMKPLRASMIAACLQQVLSTE------NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNG 869
I KP+ + L+++L+ N R R + N + G+ +L+ +DN
Sbjct: 1575 FIAKPITPVSLKTSLEEILNQHPGETNGNLRHLERKLNNHA--------GQHLLLAEDNP 1626
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
+N+ VA L+ G VE A++ L H FD MDIQMP MDG EATRRIR +
Sbjct: 1627 LNQEVALEMLESLGLNVEVVEDGLEAVE-LARQHDFDLILMDIQMPVMDGLEATRRIRTL 1685
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
N PILAMTA+ C + GM+ +++KP + E
Sbjct: 1686 PGCKN--------------------TPILAMTANAFEEDQKNCSEAGMNAHIAKPVDPEL 1725
Query: 990 LYRELAKFFKSKPLSG 1005
LY+ L ++ +P +G
Sbjct: 1726 LYKMLLEWL-PEPEAG 1740
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K AE A+ AKS FLA +SHEIRTPMN I+G LA LL D + Q + + L+
Sbjct: 1220 KESAEEANQAKSSFLANMSHEIRTPMNAIIG-LAHLLKRDATPQQVGQLEKVSDAAQHLL 1278
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA K+ LE + F L ++D V SL SEK+ +KG+E ++D +P+++
Sbjct: 1279 RIINDILDFSKIEAGKMILEPMDFELENVIDTVRSLLSEKAVDKGLEFITNIAD-LPQYL 1337
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHI 518
GD R QI+ N N+VKFT G I
Sbjct: 1338 HGDGLRLGQILLNFAANAVKFTTNGSI 1364
>gi|392373817|ref|YP_003205650.1| Sensor protein [Candidatus Methylomirabilis oxyfera]
gi|258591510|emb|CBE67811.1| putative Sensor protein [Candidatus Methylomirabilis oxyfera]
Length = 1049
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
MQ+ K AEAA AK +FLA +SHEIRTP+N I+GM L LDT L++ QR++ Q Q
Sbjct: 506 MQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDTALTTEQREFLQVVQSSS 565
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+AL+ +IN++LD ++IEA ++ +E F+LR +++ V + S +++ KG+EL +V +
Sbjct: 566 EALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYVDPAL 625
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
P VLGDP R RQ++ NLVGN++KFTERG + ++V ERT V+ +
Sbjct: 626 PSRVLGDPMRLRQVLVNLVGNAIKFTERGEVTIQV---ERTQVEAPGR 670
Score = 147 bits (372), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 202/408 (49%), Gaps = 39/408 (9%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+ + + V DTGIGIP Q R+F PF QAD++T+R +GG+G+GLSISK L+ELM G+I
Sbjct: 671 IGVHISVADTGIGIPTHQQARIFDPFAQADATTARRFGGSGLGLSISKALMELMGGRIWV 730
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF V E E ++ + + P +G+ +VVD+ P + +
Sbjct: 731 ESEVGKGSTFHCDLVV-TVAEPEAETVRAGR--ETYPDLRGVAVLVVDDNPTNRLILRRT 787
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L+ G+ V+ ++ ++A + L +S +Q +V D + D A+ +
Sbjct: 788 LHTWGMTVEEAAGGEEALAL----LRTSHAGYQ----IVILDHHMPDMDGAAVARAIRQD 839
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
P + KL++L++ + G V+ KP++ S + L +L + +
Sbjct: 840 PR---LQDIKLVMLSSWEGLPTATREDLG--ITVVLTKPVKQSKLLDMLMGLLRRAEEAE 894
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
A + L R IL+V+DN N+ + L+K G V A + AA++ ++
Sbjct: 895 APAEPSIPEARRPTLQR--HILLVEDNVDNQNLVRRILEKVGYWVVIAGNGAAAVNAVRQ 952
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D MD+QMPEMDGFEATR IR E + G + +PI+AMT
Sbjct: 953 AR-YDLILMDVQMPEMDGFEATRAIRSWERE------------HGVGR-----VPIIAMT 994
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF---KSKPLSGA 1006
A I ++CL+ GMD Y+SKP +++ L + ++ ++ PL A
Sbjct: 995 AHAIAGYREQCLEQGMDDYLSKPLKKQVLLDTVGRYLANDENPPLPPA 1042
>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
Length = 1767
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 192/416 (46%), Gaps = 77/416 (18%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++DV L V D+GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G
Sbjct: 1187 NDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGT 1246
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S+ GSTF FT I + + +G+ +V D+ +
Sbjct: 1247 IGVESQFGHGSTFYFTVKL---------QISSGQKLTVAQELEGMSILVADDNATARDIM 1297
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ L +G V S ++A + + L+
Sbjct: 1298 RTTLESMGFRVDTVRSGEEAVTRCSQ--------------------------QEYAVALI 1331
Query: 779 DWK-PN-------GHVFKL----PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
DWK PN + +L P++++++ + +++ + +A G A I KP+ AS +
Sbjct: 1332 DWKMPNLDGIETAKQIKQLAKNAPRILMVSAHATQEFLSQIEALGLA-GYISKPISASRL 1390
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLL---RGKKILVVDDNGVNRMVAAGALKKFG 883
+ L R N S LL +GK+IL+V+DN +N VA L++ G
Sbjct: 1391 LDGIMNSLGRAGVLPVRR---NSESIDPKLLLPLKGKRILLVEDNEMNLEVATEFLEQVG 1447
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
+ A + + ALDKL + FD MD QMP MDG++AT+ IR
Sbjct: 1448 IILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQATQAIR---------------- 1490
Query: 944 VDGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
KR EL LP++AMTA+ + + CLK GM+ +++KP E LY+ L K+
Sbjct: 1491 -----KRPELAELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYL 1541
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 107/156 (68%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLL 1089
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++E+V F L +L+D+ +FSEK+ +K +EL V+ VP +
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GD R Q++ NL+ N++KFTERG + + ++L E+
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQ 1185
>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1946
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 181/393 (46%), Gaps = 41/393 (10%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
++ V+DTGIGIP +R+F F Q DSSTSRHYGGTG+GL ISK L E+M G+I S
Sbjct: 1421 ILFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRIWVES 1480
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL-PPGFKGLKAVVVDEKPVRAAVTQYHL 722
GS F FT V C I + DL P +G + ++VD+ +
Sbjct: 1481 EVGKGSIFYFTIVAPVCH------IDNLSNLDLRQPQLEGKRMLIVDDNATNRRILTLQG 1534
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
G++ + + S + A + G T F I+ D + G D A + +P
Sbjct: 1535 QSWGVLTRAAESGEQALDWLQQGET-----FDLAIL----DMHMPGMDGVNLASQIRRQP 1585
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN-KRQ 841
+G L L + + + D+AK F + KP++ S + L VL + K +
Sbjct: 1586 DGQEIPLVMLTSIGKPENSGQLDEAKFAAF----LTKPIKQSQLYNVLMDVLVGQPVKVR 1641
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ + + G +IL+ +DN VN+ V L + G + AA+ L+ L
Sbjct: 1642 STCEISPTIDPYMGANIPLRILLAEDNVVNQQVGLHILGRMGYRADVAANGLEVLEALHR 1701
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D MD+QMPEMDG +AT+RI Q S N I+AMT
Sbjct: 1702 -QSYDVVLMDVQMPEMDGLKATQRICQEWSAENRPH-------------------IIAMT 1741
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
A+ + + CL+ GMD Y+SKP E L R L
Sbjct: 1742 ANAMRGDRETCLQAGMDDYISKPIRVEELVRSL 1774
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 151/269 (56%), Gaps = 28/269 (10%)
Query: 268 LAGNQAILVN-VYDMTNASDPLIMYGDQNQDGDMSLLH-ESELDFGDSFRK--HKMICRY 323
LA ++AI N VYD DPL+ QN G ++ +S L S+++ + +IC +
Sbjct: 1142 LAADRAIASNNVYD-----DPLL----QNATGMCDQVNLKSMLVVRTSYKEKPNGVICLH 1192
Query: 324 HQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQEL----------KV 373
W+ L + VG L A + +E + H+ Q+L K
Sbjct: 1193 QCDQFRQWSN-DEIELLEAVADQVGIALAQAQL----LEQEKHQRQQLAEQNVAMEKAKQ 1247
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
AEAA+ AKS FLAT+SHEIRTPMN ++GM LLLDT LS Q ++A+T + G+AL+ +
Sbjct: 1248 IAEAANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTQLSHEQAEFAETIRNSGEALLTI 1307
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIE+ KLELE FNLR +++ L L + K+ K IELA P + G
Sbjct: 1308 INDILDFSKIESGKLELEEQPFNLRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNTIRG 1367
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKV 522
D R RQI+ NL+ N++KFT +G + V V
Sbjct: 1368 DITRLRQILVNLLSNALKFTHQGEVTVSV 1396
>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
Length = 1767
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 192/416 (46%), Gaps = 77/416 (18%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++DV L V D+GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G
Sbjct: 1187 NDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGT 1246
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S+ GSTF FT I + + +G+ +V D+ +
Sbjct: 1247 IGVESQFGHGSTFYFTVKL---------QISSGQKLTVAQELEGMSILVADDNATARDIM 1297
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ L +G V S ++A + + L+
Sbjct: 1298 RTTLESMGFRVDTVRSGEEAVTRCSQ--------------------------QEYAVALI 1331
Query: 779 DWK-PN-------GHVFKL----PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
DWK PN + +L P++++++ + +++ + +A G A I KP+ AS +
Sbjct: 1332 DWKMPNLDGIETAKQIKQLAKNAPRILMVSAHATQEFLSQIEALGLA-GYISKPISASRL 1390
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGLL---RGKKILVVDDNGVNRMVAAGALKKFG 883
+ L R N S LL +GK+IL+V+DN +N VA L++ G
Sbjct: 1391 LDGIMNSLGRAGVLPVRR---NSESIDPKLLLPLKGKRILLVEDNEMNLEVATEFLEQVG 1447
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
+ A + + ALDKL + FD MD QMP MDG++AT+ IR
Sbjct: 1448 IILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQATQAIR---------------- 1490
Query: 944 VDGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
KR EL LP++AMTA+ + + CLK GM+ +++KP E LY+ L K+
Sbjct: 1491 -----KRPELAELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYL 1541
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 107/156 (68%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLL 1089
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++E+V F L +L+D+ +FSEK+ +K +EL V+ VP +
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GD R Q++ NL+ N++KFTERG + + ++L E+
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQ 1185
>gi|357027212|ref|ZP_09089297.1| ATPase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
gi|355540911|gb|EHH10102.1| ATPase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
Length = 780
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 107/155 (69%)
Query: 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQ 424
F + E +AEAAD AKS+FLA +SHEIRTPMNG+LGM LL TDL+S Q+ +
Sbjct: 217 FAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLTSRQKTFTDVIV 276
Query: 425 ICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVS 484
G AL+ +IN++LD +KI A +L L+ F L ++DV +L S + K +EL V V
Sbjct: 277 KSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLELIVRVD 336
Query: 485 DKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIF 519
++P FV+GD GRFRQIITNL+GN+VKFTE+GH+
Sbjct: 337 PRLPSFVVGDAGRFRQIITNLLGNAVKFTEKGHVL 371
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 573 KFKHLI-----DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPF 627
+F+ +I +A F ++ + + + L V VEDTGIGIP + VF F
Sbjct: 349 RFRQIITNLLGNAVKFTEKGHVLVDVGGDVVDGVIQLKVRVEDTGIGIPAEKLQNVFEKF 408
Query: 628 MQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFED 687
Q D S++R + GTG+GL+I+ LV+LM G+I S GS F F ++ ++
Sbjct: 409 AQVDGSSTRRHEGTGLGLAIAARLVDLMGGKIGVESEIGRGSVFWFAVPLPAHQQAASDE 468
Query: 688 IKQSKSEDLPPGFKGLKAVVVDEKPV 713
I +P G + +V+D+ PV
Sbjct: 469 I-------VPVDVTGARVLVIDDNPV 487
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS--PHCFDACFMDIQMPEMDG 919
IL+ +DN VN++V L G + A + + A++ ++ P MD+ MPEM+G
Sbjct: 654 ILIAEDNDVNQLVFGQILSGLGLSYRIAGNGRTAVEMYRALRPKL---ILMDVSMPEMNG 710
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+EAT IR +E ++ H PI+ +TA + ++C++ GMD
Sbjct: 711 YEATGAIRAIEQQSGS------------------HTPIIGVTAHALKGDREKCIEAGMDD 752
Query: 980 YVSKPFEEENLYRELAKFF 998
Y+ KP + L ++ +
Sbjct: 753 YLPKPVSPDRLGTKIGTWL 771
Score = 43.5 bits (101), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFG---ATVECAASAKAALDKL-QSPHCFDACFMDIQM 914
G ++LV+DDN VNR + LK + A E A A LD+ Q D +D QM
Sbjct: 476 GARVLVIDDNPVNREILLEQLKSWSFDCAAAESGAVGLAFLDRASQLGASVDCIILDYQM 535
Query: 915 PEMDGFEATRRI 926
P M+G + R I
Sbjct: 536 PGMNGADVARAI 547
>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 1768
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 124/405 (30%), Positives = 198/405 (48%), Gaps = 57/405 (14%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E++ L V D GIG+ + ++F F QADSST+R YGGTG+GL+I K LVELM G+I
Sbjct: 1188 EEILLKFSVRDNGIGLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEI 1247
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S+ GSTF F+ F + + ++ +G++ +V D+ + +
Sbjct: 1248 GVESQFGNGSTFFFSVRFKVADNQLIKVAQE---------LEGMRILVADDNATARDILR 1298
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA--QL 777
L +G V S +A S + + + L++ W E G +L
Sbjct: 1299 STLESMGFTVDTVRSGAEALSRCQ--------ETDYGVALID---WRMPEMDGLETARRL 1347
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
L + N PK ++++ + D DKA+ + I KP+ AS + L ++S
Sbjct: 1348 LSERTNP-----PKTLIVSAHADGDFIDKAEQAEIS-GYITKPISASRL---LDGIMSAL 1398
Query: 838 NKRQAGRGVPNGSSFHQGL---LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
K+ A GS L L+GK+IL+V+DN +N+ VA+ L++ G + A + +
Sbjct: 1399 GKQGAMPVRRKGSEVSPALLAQLKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQV 1458
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL- 953
AL+KL + FD MD QMP MDG++AT +R KR EL
Sbjct: 1459 ALEKL-AMQSFDLVLMDCQMPVMDGYQATAELR---------------------KRPELA 1496
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LP++AMTA+ + + CL+ GM+ +++KP E LY+ L ++
Sbjct: 1497 DLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVSLLYKTLLEYL 1541
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 6/185 (3%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ + K A+AA AKS FLA +SHEIRTPMN I+GM L L T L Q++Y +
Sbjct: 1024 EELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDR 1083
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
K+L+ +IN++LD +KIEA KL++EAV F L +L+D+ +FS K+ +K +EL V+
Sbjct: 1084 ASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAP 1143
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK----VHLAERTMVKTDAKDETLLN 541
+P ++GDP R Q++ NL+ N++KFTE+G + + V E ++K +D +
Sbjct: 1144 NIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNGI-- 1201
Query: 542 GGTEE 546
G TEE
Sbjct: 1202 GLTEE 1206
>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
CN-32]
Length = 1771
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 197/411 (47%), Gaps = 67/411 (16%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++DVTL V D+GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G
Sbjct: 1187 NDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGN 1246
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAA 716
I S+ GSTF FT ++ S + L G +G+ +VVD+
Sbjct: 1247 IGVESQFGHGSTFYFTV-----------KLQISSGQKLTVGQELEGMSVLVVDDNATARD 1295
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ + L +G V T + G + Q + + D + D A+
Sbjct: 1296 IMRTALESMGFNV----------DTVRTGEEAVSRCIQHEYAVALIDWKMPSMDGLEAAR 1345
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + P++++++ + + + + + G A I KP+ AS + + L
Sbjct: 1346 QIQQQAKAA----PRILMVSAHANHEFLTQIEQLGLA-GYISKPISASRLLDGIMNAL-- 1398
Query: 837 ENKRQAGR-GVPNGSSFHQGL-------LRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
GR G+ ++ L L+GK++L+V+DN +N VA L++ G +
Sbjct: 1399 ------GRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEFLEQVGIILSI 1452
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A + + ALDKL S +D MD QMP MDG++AT IRQ
Sbjct: 1453 ATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQATMAIRQ-------------------- 1491
Query: 949 KRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
R EL HLP++AMTA+ + + CL+ GM+G+++KP E LY+ L K+
Sbjct: 1492 -RPELAHLPVIAMTANAMAGDKEMCLRAGMNGHIAKPIEVNILYQTLLKYL 1541
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 105/156 (67%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A+AA AK FLA +SHEIRTPMN I+GM L L T L Q++Y + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL+++AV F L +L+D+ +FSEK +K +EL V+ VP +
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GD R Q++ NL+ N++KFTERG + + ++L E+
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQ 1185
>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1705
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 197/417 (47%), Gaps = 46/417 (11%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+I++ + G++ V L V DTGIG+ Q R+F PF QAD ST+R YGGTG+GL+IS
Sbjct: 1109 LISVRVMDQGADWVRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTIS 1168
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
L ELM G+I S P GSTF F G+ V E + + L+ +VV
Sbjct: 1169 TRLTELMGGEIRVESAPGAGSTFGFDVRLGQQSGVVSEPARLTLEA------LSLRILVV 1222
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWIS 767
D+ + L G V+ ++S ++A + D+ +P D++L++ W
Sbjct: 1223 DDNATAREILTQMLLAFGFAVESAASGREALDRLR-----VVDRLEPFDLVLMD---WKM 1274
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
E G + + + P LI++ T + + + KP+ +S +
Sbjct: 1275 PEMDGIET-IRRLCAQTEITQAPALIMV-TAYGHEAAHQVAVELGVSGFLTKPVTSSNLL 1332
Query: 828 ACLQQVLSTENKRQAGR--GVPN---GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKF 882
+ + R+ G+ +PN SS LRG +L+V+DN +N+ +A L
Sbjct: 1333 DAIMHAVG----RRGGQFTRMPNRQEESSEAIAGLRGAHVLLVEDNELNQELALELLVSN 1388
Query: 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942
G +VE AA+ + AL++L FD MD QMP MDG+ ATR IR+ A
Sbjct: 1389 GLSVEIAANGREALERLAGESRFDGVLMDCQMPVMDGYTATRAIREQPELAG-------- 1440
Query: 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++AMTA+V+ ++ L GM+ ++ KP ++ LAK+ +
Sbjct: 1441 ------------LPVIAMTANVMSGDREKALAAGMNDHIGKPINVREMFATLAKWIR 1485
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A AKS FLA +SHEIRTPMN I+G+ L L T+L + QR+Y + ++L+ +I
Sbjct: 964 AEEATQAKSSFLANMSHEIRTPMNAIIGLSHLALQTELDARQRNYIEKVHRSAESLLGII 1023
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA KL++E + F L ++D++ +L K+ KG+EL + +VP ++GD
Sbjct: 1024 NDILDFSKIEAGKLDIEHIAFRLEDVMDNLANLVGLKAEEKGVELMFDLPPEVPTALVGD 1083
Query: 495 PGRFRQIITNLVGNSVKFTER-GHIFVKVHLAER 527
P R QI+ NL N+VKFTE G I + V + ++
Sbjct: 1084 PLRLGQILINLGNNAVKFTEPGGEILISVRVMDQ 1117
>gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
Length = 1193
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 188/406 (46%), Gaps = 68/406 (16%)
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
G + L + V+DTG+G+ Q+ +F F QADSS +R YGGTG+GL+I K L +LMR
Sbjct: 704 GNTARAELEIDVQDTGVGMSQEQQQVLFQAFSQADSSITRKYGGTGLGLTICKRLAQLMR 763
Query: 657 GQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
G I S+ VGSTF+FT G S E PP +A+VVD+ P+ A
Sbjct: 764 GDIWVTSQSGVGSTFTFTVNLGL-----------STLEANPPLSAMRRALVVDDSPLARA 812
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ L + G S+I S GL + + + ++ + G +
Sbjct: 813 ILIRLLEKHGY-----SAIPAESGAEALGLLADTRTAPFEFVTIDFNM------PGMDGL 861
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGG-----FADTVIMKPLRASMIAACLQ 831
L + P+L+++ + D A G D V+ KP+ A+ I ++
Sbjct: 862 ELSEAIRNQISPCPRLVMVTAS------DTAALGSDERLHCVDAVLSKPVTAAQIGKLVR 915
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
++ PN + L G +IL+VDD N ++A L+ FG TV+ A +
Sbjct: 916 ------DRELQNHAKPNAPA----PLAGLRILLVDDMPTNLLIAGEMLESFGITVDTADN 965
Query: 892 AKAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
AL K + + +D MDIQMPEMDG EATRR+R +E +
Sbjct: 966 GVLALKKVIDEGNDYDIVLMDIQMPEMDGLEATRRLRAVERSQS---------------- 1009
Query: 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE----EENLYR 992
LPI+AMTA+ + CL GM+ +++KP + ++ L+R
Sbjct: 1010 ----LPIIAMTANAQDSERQRCLAAGMNDFLTKPIDPGLLQDTLFR 1051
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 89/138 (64%)
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMN ++G+ LLL DLS QRDY G+ L+ LIN++LD +KIE
Sbjct: 562 FLANMSHEIRTPMNAVIGLAHLLLKGDLSGKQRDYISRIHGSGQMLLGLINDILDFSKIE 621
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A ++ LE F L +LD+V S+ +++ KG+ + V VP +LGDP R QI+ N
Sbjct: 622 AGRMVLEETEFALDDVLDNVTSVLLHRAQEKGLIMQYVVEPDVPTNLLGDPLRLAQILIN 681
Query: 505 LVGNSVKFTERGHIFVKV 522
L+GN++KFT G I V V
Sbjct: 682 LLGNALKFTASGSITVFV 699
>gi|300869576|ref|ZP_07114157.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
gi|300332444|emb|CBN59357.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
Length = 947
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 109/155 (70%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+QE + AEAA AKS+FLA +SHEIRTPMN ++GM +LLLDT L+ QRD+ +T + G
Sbjct: 765 LQEARDAAEAATRAKSEFLANMSHEIRTPMNAVIGMTSLLLDTPLTPEQRDFVETVRTSG 824
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ALIN++LD +KIEA KLELE F+LR ++ L L + K+ KG++LA + V
Sbjct: 825 DALLALINDILDFSKIEAGKLELEEQPFDLRDCIEASLDLLAPKAAEKGLDLAYIIDGDV 884
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P ++GD R RQI+ NL+ N+VKFT +G + V V
Sbjct: 885 PSTIVGDISRLRQILVNLLSNAVKFTAKGEVVVSV 919
>gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
Length = 1681
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 174/628 (27%), Positives = 259/628 (41%), Gaps = 132/628 (21%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS FLA +SHEIRTPMN I G + + L E+ +
Sbjct: 961 AKSDFLANMSHEIRTPMNA-------------------------ILGMSYLVLQTELSSK 995
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+ K+ A +L IL+D+L ++ IE VF D V
Sbjct: 996 QRDYVGKVHQAA--GSLLGILNDILDFSKIEAEKMDIECTVFDLDDV------------- 1040
Query: 501 IITNLVGN-SVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTL 559
++NL S K E+ F+ D E L +G+ R G N
Sbjct: 1041 -LSNLANVVSYKVEEKNMAFI-----------FDLPPE-LPRYYHGDGL-RLGQILINYC 1086
Query: 560 SGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619
N+ KF H +++S++ + E V L CVED GIGIP
Sbjct: 1087 ---------NNAVKFSH--------NDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPEQK 1129
Query: 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679
Q +F F Q D+STSR YGGTG+GL+I K L LM G++ S VGS F
Sbjct: 1130 QGVLFGSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRLTLNC 1189
Query: 680 CKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDAS 739
Y +S+ L G A +V P + H G+ KM ++ + +
Sbjct: 1190 ADTY--------ESQSLFDALAGETAKLVGLHPRLEKLLTEH----GLAAKMQVAVAETN 1237
Query: 740 STAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD---WKPNGHVFKLPKLILLA 796
S + L S + ++L + S F+ +LLD P+ +LL
Sbjct: 1238 SVIEE-LKHSRTR---QLVLCDY--------SAFSPELLDALTANPDSR-------MLLV 1278
Query: 797 TNISKDECDKAKAGGFADTVIM-KPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFH-- 853
N+S + + + KPL I L +L N+ GR V S H
Sbjct: 1279 GNLSDQDALRPLIENNPRVLSQTKPLTPIAIGNALLSLLGHNNEN--GRQVQQDHSLHAL 1336
Query: 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ 913
+ L G ++L+V+DN +N+ +A L + G V A A+++++ + FD MD Q
Sbjct: 1337 KTQLAGAEVLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIERIEQQY-FDCVLMDCQ 1395
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MP +DG+EATRRIR++ AN LPILAMTA+ + ++ L
Sbjct: 1396 MPVLDGYEATRRIRELPEFAN--------------------LPILAMTANAMSGDIEKAL 1435
Query: 974 KCGMDGYVSKPFEEENLYRELAKFFKSK 1001
GM+ ++KP ++LY +A+ K
Sbjct: 1436 AVGMNDQITKPVHVKDLYTVMARRITPK 1463
>gi|254415604|ref|ZP_05029363.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196177554|gb|EDX72559.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1156
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 200/409 (48%), Gaps = 58/409 (14%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
VTL V DTGIGI + Q ++F F Q ++ST+R YGGTG+GL I + LVEL+ G+I
Sbjct: 578 VTLRFSVTDTGIGISAADQSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGV 637
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP------GFKGLKAVVVDEKPVRA 715
S+ GSTF FT K++ LPP + LK +V +
Sbjct: 638 ESKVGQGSTFWFTVPV--------------KTQPLPPAQAVPLALRQLKLLVTAKNATTR 683
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFN 774
+ HL G+ + ++ D++ST + L ++ + P D+ ++ D + G
Sbjct: 684 QTVRSHLEAWGMQIDEAT---DSTSTM-DALRNAVSRCHPYDVAIL--DLQLPGSQGESI 737
Query: 775 AQLLDWKPNGHVFKLPKLILLATNISKD---ECDKAKAGGFADTVIMKPLRASMIAACLQ 831
++ P+ KLI++ T D E + + G+ + KP++AS + L
Sbjct: 738 VPMIRCNPS---LASTKLIVITTMHQLDTVQELESMEILGY----LTKPMKASQLWESLL 790
Query: 832 QVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
++ E + + + + H KIL+VDD+ +N+ V L+ G ECA++
Sbjct: 791 AAVTPEVDLETWQTTIHQPT-HLNDSSHLKILLVDDHPINQTVIVNQLQMLGYQPECASN 849
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
AL KLQ+ +D FMD QMP +DG+EATR +R+ E GS+
Sbjct: 850 GSEALAKLQA-QSYDIVFMDCQMPVLDGYEATRELRRQE----------GSN-------- 890
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
H ++A+TA + + ++CL GMD ++SKPF+++ L + ++ KS
Sbjct: 891 -RHTIVIALTASALESDREKCLAVGMDDFLSKPFDQDTLQAMIERWAKS 938
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 127/203 (62%), Gaps = 10/203 (4%)
Query: 376 EAADVA------KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
EA D A KS+FLA +SHEIRTP+NG+LGM+ LLL TDL+ Q +Y +T + C K
Sbjct: 410 EARDAALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDLNPQQLNYTRTIESCAKH 469
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ +IN++LD +K+EA K+ LE + F+L + LD V+ + + ++ KG+ELA+ V VP
Sbjct: 470 LLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNVPR 529
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE-TLLNGGTEEGV 548
+ DPGR RQI+ NLVGN++KFT+ G + V+V ++ T ++ TL T+ G+
Sbjct: 530 QLQSDPGRLRQILLNLVGNAIKFTDAGEVVVRVAVSRHQPTDTLSQSSVTLRFSVTDTGI 589
Query: 549 CRSGTGQ---FNTLSGLEAADGR 568
S Q F S +EA+ R
Sbjct: 590 GISAADQSKLFQAFSQVEASTTR 612
>gi|414070614|ref|ZP_11406596.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806922|gb|EKS12906.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1098
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 202/428 (47%), Gaps = 61/428 (14%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I ++ +NG ++ V+DTGIGIP+ Q ++F F Q DSST+R YGGTG+GL+I
Sbjct: 709 IAKLIPTNGN--EIRFNCQVKDTGIGIPVEQQAKLFKSFSQVDSSTTRKYGGTGLGLAIV 766
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED-LPP-GFKGLKAV 706
K L LM+G++ S GS F F K K K+E +PP G+
Sbjct: 767 KKLCNLMQGEVEVKSDENKGSNFIFDITLKKGK----------KTEKVMPPIDITGINIQ 816
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
+ +A V Q L + G +V +SSS K A +T + T F DI++++
Sbjct: 817 IACSNKSQANVLQKQLTQWGAIVTISSSAKIALNTYEQFYTQHAHPF--DIVIIDTKL-- 872
Query: 767 SGEDSGFNAQLLDWKPNG-HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA-- 823
S N L N ++ L+L+ T + + K GF KP+
Sbjct: 873 ----SDSNGLTLGKTINDLNLLSTANLVLMTTIDQFETNEHYKQNGFT-AYFPKPMTTKD 927
Query: 824 --SMIAACL--QQVLSTENKRQAGRGV----PNGSSFHQGLLRGKKILVVDDNGVNRMVA 875
+++ CL + L +EN + PN + + + +IL+ +DN +N++VA
Sbjct: 928 IFNLLTKCLPERNTLHSENTQTCTITEKPLGPNDIVWREDI----RILLAEDNQINQIVA 983
Query: 876 AGALKKFG-ATVECAASAKAALDKLQSPHC---FDACFMDIQMPEMDGFEATRRIRQMES 931
A LKK G + V+ A + K LD L + + MD QMP MDG++AT IR E+
Sbjct: 984 ATTLKKMGISVVDIATNGKEVLDYLDQKNTIEPYSLILMDCQMPVMDGYQATTLIRNNEA 1043
Query: 932 KANEQMMNGGSSVDGTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
RD+ + + I+AMTA+ + +CL GMD Y+SKP ++ L
Sbjct: 1044 ------------------RDKANAITIIAMTANAMTGDKTKCLDSGMDDYISKPIAQDIL 1085
Query: 991 YRELAKFF 998
+ +L K+
Sbjct: 1086 FEKLLKWL 1093
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 2/199 (1%)
Query: 320 ICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAAD 379
I Y + + W +L + L ++ G I K H + E K AE A+
Sbjct: 510 IVNYKKDGTAFWNSLQISPVFDEHSKLTAFV--GIQQDITKQIAANHSLIEAKALAEQAN 567
Query: 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLD 439
+AKS+FLA++SHEIRTPMNG+LGML +LD+ L+ Q+ + A +L+ +IN++LD
Sbjct: 568 IAKSEFLASMSHEIRTPMNGVLGMLNFILDSPLNEKQQYQTRIALNSANSLLNIINDILD 627
Query: 440 RAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFR 499
+K++A KLELE + FNL A+L D L + ++ +KGIEL + ++D FV+GDPGR R
Sbjct: 628 FSKVDAGKLELEELEFNLHAMLGDFLETVAAQAYSKGIELILDITDIKYPFVIGDPGRLR 687
Query: 500 QIITNLVGNSVKFTERGHI 518
QI+TNLV N++KFT G +
Sbjct: 688 QILTNLVNNALKFTHVGEV 706
>gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator
hybrid protein [Rhizobium etli Kim 5]
Length = 590
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 109/156 (69%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++EL RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL T+L + Q+ +
Sbjct: 178 ELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKS 237
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A ++ L F++ ++DV +L S + K IEL +
Sbjct: 238 GNALLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAAEKNIELLGRAAPD 297
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P V+GD GRFRQI+TNLVGN+VKFTERGH+FV V
Sbjct: 298 LPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDV 333
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 32/229 (13%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ +EDTGIGIP E VF F Q D+S++R + GTG+GL+I+ LV+L G I S+
Sbjct: 347 IRIEDTGIGIPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQW 406
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GS F+ F ++ + + LP +G + +V+D+ V + L+
Sbjct: 407 GKGSVFTVKLPFAVAAAHL-------EPKPLPINVQGARILVIDDNEVNRRILTEQLSLW 459
Query: 726 GI----MVKMSSSIKDASSTAKNGLTSSE---DKFQPDIILVEKDCWISGEDSGFN-AQL 777
G + + + A G+T D PD+ +G N A+
Sbjct: 460 GFDGVAAEGGETGLAILEAAADLGVTVDAVILDYHMPDV-------------NGANVARR 506
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
L P +LP + L + +IS E + A G A +MKP RA+++
Sbjct: 507 LRADP--RFVELPIIFLTSMDISGTEKEFAALNGQAH--LMKPARANVL 551
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPH----CFDACFMDI 912
++G +ILV+DDN VNR + L +G A + L L++ DA +D
Sbjct: 434 VQGARILVIDDNEVNRRILTEQLSLWGFDGVAAEGGETGLAILEAAADLGVTVDAVILDY 493
Query: 913 QMPEMDGFEATRRIR 927
MP+++G RR+R
Sbjct: 494 HMPDVNGANVARRLR 508
>gi|359454681|ref|ZP_09243954.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048281|dbj|GAA80203.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1098
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 204/431 (47%), Gaps = 67/431 (15%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I ++ +NG ++ V+DTGIGIP+ Q ++F F Q DSST+R YGGTG+GL+I
Sbjct: 709 IAKLIPTNGN--EIRFNCQVKDTGIGIPVEQQAKLFKSFSQVDSSTTRKYGGTGLGLAIV 766
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED-LPP-GFKGLKAV 706
K L LM+G++ S GS F F K K K+E +PP G+
Sbjct: 767 KKLCNLMQGEVEVKSDENKGSNFIFDITLKKGK----------KTEKVMPPIDITGINIQ 816
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766
+ +A V Q L + G +V +SSS K A +T + T F DI++++
Sbjct: 817 IACSNKSQANVLQKQLTQWGAIVIISSSAKIALNTYEQFYTQHAHPF--DIVIIDTKL-- 872
Query: 767 SGEDSGFNAQLLDWKPNG-HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA-- 823
S N L N ++ L+L+ T + + K GF KP+
Sbjct: 873 ----SDSNGLTLGKTINDLNLLSTANLVLMTTIDQFETNEHYKQNGFT-AYFPKPMTTKD 927
Query: 824 --SMIAACL--QQVLSTEN-------KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNR 872
+++ CL + L +EN K+ G PN + + + +IL+ +DN +N+
Sbjct: 928 IFNLLTKCLPERNTLHSENTQTCTITKKPLG---PNDIVWREDI----RILLAEDNQINQ 980
Query: 873 MVAAGALKKFG-ATVECAASAKAALDKLQSPHC---FDACFMDIQMPEMDGFEATRRIRQ 928
+VAA LKK G + V+ A + K LD L + + MD QMP MDG++AT IR
Sbjct: 981 IVAATTLKKMGISVVDIATNGKEVLDYLDQKNTIEPYSLILMDCQMPVMDGYQATTLIRN 1040
Query: 929 MESKANEQMMNGGSSVDGTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEE 987
E+ RD+ + + I+AMTA+ + +CL GMD Y+SKP +
Sbjct: 1041 NEA------------------RDKANAITIIAMTANAMTGDKTKCLDSGMDDYISKPIAQ 1082
Query: 988 ENLYRELAKFF 998
+ L+ +L K+
Sbjct: 1083 DILFEKLLKWL 1093
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 2/199 (1%)
Query: 320 ICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAAD 379
I Y + + W +L + L ++ G I K H + E K AE A+
Sbjct: 510 IVNYKKDGTAFWNSLQISPVFDEHSKLTAFV--GIQQDITKRIAANHSLIEAKALAEQAN 567
Query: 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLD 439
+AKS+FLA++SHEIRTPMNG+LGML +LD+ L+ Q+ + A +L+ +IN++LD
Sbjct: 568 IAKSEFLASMSHEIRTPMNGVLGMLNFILDSPLNEKQQYQTRIALNSANSLLNIINDILD 627
Query: 440 RAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFR 499
+K++A KLELE + FNL A+L D L + ++ +KGIEL + ++D FV+GDPGR R
Sbjct: 628 FSKVDAGKLELEELEFNLHAMLGDFLETVAAQAYSKGIELILDITDIKYPFVIGDPGRLR 687
Query: 500 QIITNLVGNSVKFTERGHI 518
QI+TNLV N++KFT G +
Sbjct: 688 QILTNLVNNALKFTHVGEV 706
>gi|376007484|ref|ZP_09784679.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
gi|375324120|emb|CCE20432.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
Length = 1493
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++E K+ AE A AKS+FLAT+SHEIRTPMN ++GM LLLD +L+ QRD+ +T + G
Sbjct: 718 LEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSG 777
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KIE+ KLELE F LR L++ L L S ++ KG+ELA +
Sbjct: 778 DALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPST 837
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKDET 538
P+ +LGD R RQ++ NLV N++KFT G + + V A++ + K+D D T
Sbjct: 838 PKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSDDSDFT 892
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/444 (27%), Positives = 182/444 (40%), Gaps = 88/444 (19%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI-------- 659
V DTGIGIP +R+F F Q D+ST+R YGGTG+GL+IS+ L +LM G++
Sbjct: 902 VRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLMNGKMWVASWVNL 961
Query: 660 ---------SFVS-----------RPQV---GSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
S +S RPQV GS F FT V C + D+ + S+D
Sbjct: 962 LDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIV---CSGFNTPDLGEF-SDDF 1017
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKN--GLT------- 747
G K ++V+ + + + G++ + DA + GL
Sbjct: 1018 ---LHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADALKVLHDNPGLDLIILGIN 1074
Query: 748 ---SSEDKFQPDIILVEKDCWISGE--DSGFNAQLLDWKPNGHVFKLPKLILLATNISKD 802
E I +EK I+G+ FN + ++ N V + +
Sbjct: 1075 LPDMDEATLASRIRQLEKQ-MIAGKYRQKPFNLVMFNYASNTEVLR------------RL 1121
Query: 803 ECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK-- 860
E G + KPL+ S L Q+ + + + N S + +
Sbjct: 1122 EAQGVNVAGLVN----KPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDPAIPQPHA 1177
Query: 861 --KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+IL+ +DN N+ VA L++ G + A + LD L +D MD+QMPEMD
Sbjct: 1178 NLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNRQQ-YDVILMDVQMPEMD 1236
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G EA++ I S GS + R I+AMTA+ + + CL GMD
Sbjct: 1237 GLEASKHICAAYSD--------GSDMGPRKPR------IIAMTANAMQGDREMCLNAGMD 1282
Query: 979 GYVSKPFEEENLYRELAKFFKSKP 1002
Y++KP E L LAK P
Sbjct: 1283 DYITKPVRREALAEALAKCHPISP 1306
>gi|452966229|gb|EME71242.1| sensor protein gacS [Magnetospirillum sp. SO-1]
Length = 965
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 189/401 (47%), Gaps = 61/401 (15%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V D+GIGI AQ R+F F Q D+ST+R YGGTG+GL+ISK L ELM G++ S P
Sbjct: 484 VRDSGIGIAPEAQHRLFSMFSQVDASTARRYGGTGLGLAISKKLAELMGGEVGMESAPGQ 543
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F T D+ +S PP + + +VVD+ PV + + L G+
Sbjct: 544 GSRFWITLPL---------DLLAPQSL-APPDLRNRRVLVVDDNPVNRDIIERQLRAFGV 593
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDC-WISGEDSGFNAQLLDWKPNGH 785
V+ + + LT + +P ++ +++ ++G + +++ P
Sbjct: 594 RVQACAE----AGAGMEELTRAAVSGEPWEVAVIDSQMPMVTGPEM---VRMIRAIP--- 643
Query: 786 VFKLPKLILLATN--ISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK---- 839
+ ++I+ ++ ++ DKA GF + KPLR S + + +VL ++
Sbjct: 644 MLSGTRIIVTSSQGLAAEPNQDKAAIDGF----LHKPLRQSTLLDTIGRVLGLSDRPAHS 699
Query: 840 ---RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
Q G P + R +ILV +DN VN+ VA G L+K G +V+ AL
Sbjct: 700 AGHEQEETGAPESAG------RRLRILVAEDNPVNQQVALGLLRKLGHSVDVVGDGAEAL 753
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ ++ +D MD+QMP MDG EATR IR + + A +P
Sbjct: 754 EAVRL-LPYDLVLMDVQMPGMDGLEATRAIRALATPAA-------------------RIP 793
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
I+AMTA+ + C GM+GY+SKP + L LA +
Sbjct: 794 IVAMTANAMRGDDQICFDSGMNGYISKPIDRRKLAEALAPY 834
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++++ K AEA + KS+FLAT+SHEIRTPMNG++GM LLLDT LS QR +A+T +
Sbjct: 312 RRLRDAKEAAEAGNRIKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRD 371
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G++L+ +IN++LD +K+EA KL+L+ F L +++ V+ + + ++ KGIE+A +
Sbjct: 372 SGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDP 431
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKD 536
++ V DPGR RQ++ NL GN+VKFTE+G + ++ L E M + D +D
Sbjct: 432 RLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEATLLEPRGEAQMARFDVRD 486
>gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 785
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 191/417 (45%), Gaps = 49/417 (11%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ + A+NG V V DTGIGI Q +F F QA++ST+R +GGTG+GL+I +
Sbjct: 403 LRLKATNGAKAFVEF--AVSDTGIGIASENQAHIFSGFSQAEASTTRRFGGTGLGLAICQ 460
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LV LM G + S P GS F FT + L KA+VVD
Sbjct: 461 RLVGLMGGTLEVDSVPGEGSNFHFTVPLQIAPSAAVGPAAMVQRHPL----AAQKALVVD 516
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSS-------IKDASSTAKNGLTSSEDKFQPDIILVEK 762
+ PV A+ LG V ++ ++ A S K D PD E
Sbjct: 517 DNPVARALLATMTRSLGWDVDVAEGGPQALERVQAAQSGGKPYQVIFMDWRMPDWDGWET 576
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
I G + +L NG + + DE +A GF ++KP+
Sbjct: 577 TRRIRAAMPGGDTLILMVSANGRAMMAER--------TADE--QALLNGF----LVKPVT 622
Query: 823 ASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ-GLLRGKKILVVDDNGVNRMVAAGALKK 881
ASM+ + + K G + ++ L G ++LVV+DN +N++VA G LK+
Sbjct: 623 ASMLLDAVMDAQAASAKAATGVNPAAPQAVNKPKRLDGMRLLVVEDNKINQLVAKGLLKQ 682
Query: 882 FGATVECAASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
GA V A + + A++ L + P F+A MD+QMP MDG+EATR +R M AN
Sbjct: 683 EGAEVTLADNGQLAVELLTAQPDAFEAVLMDVQMPVMDGYEATRALRTMPVFAN------ 736
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
LP++AMTA+ + + + CL GM+ +V KPFE ++L R L F
Sbjct: 737 --------------LPVIAMTANAMASDREACLAAGMNDHVGKPFEIDHLVRTLLHF 779
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 96/150 (64%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A +AKSQFLA +SHE+RTPMN ILGML LL T+L+ QR Y ++L++L+
Sbjct: 256 AEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGTELTDKQRSYTHNTASAARSLLSLL 315
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +K+EA K+ L+ F +L D+ + S K IE+ V VP ++GD
Sbjct: 316 NDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVGAKTIEVLFDVGTDVPNALVGD 375
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
R +Q++ NL GN+VKFTERG + +++ L
Sbjct: 376 DMRLQQVLINLGGNAVKFTERGEVVIRLRL 405
>gi|392548097|ref|ZP_10295234.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas rubra ATCC
29570]
Length = 1300
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 184/405 (45%), Gaps = 55/405 (13%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+N+ + + L+ V DTGIG+ Q R+F F QAD+S +R YGGTG+GL+IS+
Sbjct: 706 VNISYQSQDEQSARLLFSVIDTGIGLSQEQQTRLFQSFAQADTSITRKYGGTGLGLTISQ 765
Query: 650 CLVELMRGQISFVSRPQVGSTFSFT--AVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVV 707
LV+LM G+I S GSTF FT F + + + FK A+V
Sbjct: 766 HLVKLMGGEIFVESELGRGSTFYFTLPLPFATPTRLLSQPAEH---------FKNKMALV 816
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP--DIILVEKDCW 765
VD+ + V L + GI K+ SS +N QP DI ++ W
Sbjct: 817 VDDNALAREVMAAMLKKFGIASKLFSSGDACIEYVRNQ--------QPHFDIAFID---W 865
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
+ G +D H L T ++ K + ++++KP+ S
Sbjct: 866 HMPQKDG-----IDTIMELHAQSPASQYALVTAYGRELGLKDEQKHIISSILLKPINPSS 920
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGAT 885
+ CLQ L+ + +Q P S L G ILV +D VN+ +A L GAT
Sbjct: 921 VFDCLQACLAPQ-PQQLNTSCPAQDS----RLSGLTILVAEDQPVNQEIAVEILSFHGAT 975
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V A + + AL+ +QS FD MD+QMP MDG +ATR I Q+
Sbjct: 976 VAVANNGQEALNAVQST-TFDIVLMDMQMPVMDGLQATRAIGQL---------------- 1018
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+ +H PILAMTA+ + CL GM G+++KP + EN+
Sbjct: 1019 ----TNTVHPPILAMTANAMQDDIQTCLDAGMVGHIAKPIDVENM 1059
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 91/141 (64%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLA +SHEIR+PMN I+GM L L+T L QR Y + K L+ L+N++LD +
Sbjct: 568 KSEFLANMSHEIRSPMNAIIGMAHLALNTQLDIKQRSYVEKIDNAAKQLLKLLNDILDFS 627
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
KIEA K+E+E+ F L +LD+V ++ K+ K +EL V V +GDP R Q+
Sbjct: 628 KIEAGKVEIESTHFQLDKVLDNVATIVGLKADEKQLELIFDVHPDVSNDYIGDPLRISQV 687
Query: 502 ITNLVGNSVKFTERGHIFVKV 522
+ NL GN+VKFTE+GH+ V +
Sbjct: 688 LINLAGNAVKFTEQGHVTVNI 708
>gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 920
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 196/399 (49%), Gaps = 41/399 (10%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V D+GIG+ +R+F F QADSST+R YGG+G+GLSI K LV +M G I
Sbjct: 310 VVVQFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICKRLVGMMDGDIWV 369
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVVVDEKPVRAAVTQY 720
S+P GS F+FTA + +D ++ + LP GL+ +VVD+ PV +
Sbjct: 370 ESQPGRGSQFTFTAQLVSQR----QDRRRFR---LPSMHLVGLRVLVVDDNPVVRQILVE 422
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L V+ +++++ + E P ++V ++G G L
Sbjct: 423 SLAIFSFCVEALATVEEVIEALGQAIARGE----PYGLVV-----LAGRFGGKGGVALAG 473
Query: 781 KPNGHV--FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
+ N LPK++L+ + +D+ + + KP+ +++ + +VL
Sbjct: 474 EINRCYPQLTLPKMVLVGAS-ERDDVVAMAGAQLVELFVTKPITQTILFEGVLEVLGYVV 532
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ Q G + + +L G +IL+V+DN +N+ VA L+ G TV A S + A+D+
Sbjct: 533 QAQQHAG-GRDRTREKRVLSGCQILLVEDNEINQQVACELLQGEGVTVVVANSGQQAVDR 591
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ S FDA MDIQMP MDG+EAT+ IR+ ++ LPI+
Sbjct: 592 VLSGERFDAVLMDIQMPGMDGYEATQVIRKQPQFSD--------------------LPII 631
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
AMTA+ + + CL GM+ ++ KP + + L+ L ++
Sbjct: 632 AMTANAMAGDRERCLAAGMNDHIGKPIQPKLLFETLGRY 670
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 102/157 (64%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
++ K A+ A+ AKS FLA +SHEIRTPMN I+GM L L TDL++ QRDY
Sbjct: 144 RELHSAKDEAQQANRAKSDFLANMSHEIRTPMNAIIGMSHLALKTDLNAKQRDYVGKIHD 203
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
L+ +IN++LD +KIEA KL +E+V F L +L +V +L S K KG+E++ V
Sbjct: 204 SALLLLGIINDILDFSKIEAGKLSMESVAFYLDDVLSNVANLVSMKVEEKGLEISFQVDR 263
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VP ++GDP R QI+ NLV N+VKFTE+G+I V +
Sbjct: 264 GVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIVVAI 300
>gi|399018620|ref|ZP_10720792.1| signal transduction histidine kinase [Herbaspirillum sp. CF444]
gi|398100634|gb|EJL90868.1| signal transduction histidine kinase [Herbaspirillum sp. CF444]
Length = 1135
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 183/404 (45%), Gaps = 69/404 (17%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
TL V DTGIGI L Q ++F F QAD+ST+R +GG+G+GLSI + LVE M G+I +
Sbjct: 623 TLRFSVSDTGIGISLDKQSQIFAAFTQADASTTRRFGGSGLGLSICRHLVEQMGGEIGVI 682
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
S P GS F F+ F E+ + SE P L A++VD+ + +
Sbjct: 683 SEPGRGSEFWFSIPF----EW------SANSEFSAPEMMTLNALIVDDNDMALENLELTA 732
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG--FNAQLLDW 780
+G V + S ++A + S ++ G F+ LLDW
Sbjct: 733 QSMGWNVVKALSGEEAIEKVR-----------------------SKQEGGGNFDVFLLDW 769
Query: 781 KPNG-----HVFKLPKL--------ILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
G K+ ++ +L+ T S++E + D ++ KP+ S +
Sbjct: 770 NMPGMDGLSAAIKIREMLRQEAAPIVLMVTAFSREELLRQTRIDAIDGILCKPVTRSTLH 829
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
+ + L+ + A + L G ++L+VDDN +NR VA + GA V+
Sbjct: 830 NNVTEALNRRSHESASGLRMQAQKKKRRRLPGVRVLIVDDNEINREVAMLVVSAEGAVVQ 889
Query: 888 CAASAKAALD-KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946
A K ALD L +P D MD+QMP MDG+E TR++R + + A
Sbjct: 890 LANDGKNALDWLLANPDAIDIVLMDVQMPIMDGYETTRQLRTLPALA------------- 936
Query: 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LP++A+TA A D L GM+ +VSKPF E L
Sbjct: 937 -------QLPVVALTAGAFKAQQDAALNAGMNAFVSKPFNVEEL 973
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 101/171 (59%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
I ++ D ++ E ++ E A+ KS+FL+ +SHEIRTPMN ILG LL L+
Sbjct: 448 IAQLRDRQQEIAEKNLQLEQANRLKSEFLSHMSHEIRTPMNAILGFAYLLDQRHLAGDTG 507
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
D + + G+ L ++IN++LD +KIEA LE+E F + LD++ + + + +K +
Sbjct: 508 DMIRKIRSGGQTLQSIINDILDFSKIEAGHLEIEHAPFRISTTLDELSDIMAANAGHKDL 567
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
EL + ++ + GD R QI+ NL GN++KF++ G + V++ L E+T
Sbjct: 568 ELILAPPPELGGQLFGDALRLEQILINLTGNAIKFSDHGVVKVEISLLEQT 618
Score = 43.1 bits (100), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 66/174 (37%), Gaps = 28/174 (16%)
Query: 813 ADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNR 872
AD + K M+ A + VL +K +A + L KKIL VDD+
Sbjct: 237 ADAFVRKEESLDMMLARVTAVLRKIDKVEARHATAS-------LQSPKKILAVDDSMTYL 289
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
L G V A S + ALD L S D +D MP +DG E RRI+
Sbjct: 290 HELNSTLGGEGYDVILAHSGQEALDML-SVQTVDCILLDRLMPGLDGTETCRRIKA---- 344
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
A RD +P++ +TA E L G D YV K E
Sbjct: 345 -------------SPATRD---IPLIMLTAMEDQEAMIEGLSTGADDYVLKSHE 382
>gi|386827544|ref|ZP_10114651.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386428428|gb|EIJ42256.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 1871
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 122/178 (68%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+ G A I ++ ++E K AE+A+ +KS FLAT+SHEIRTPMNG++GM LLL+T
Sbjct: 1180 ILGVATDITSLKQVEKALREAKENAESANRSKSDFLATMSHEIRTPMNGVIGMTQLLLNT 1239
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
L+S QR Y + + G +L+ +IN++LD +KIEA KL L+ + ++R ++DD++ LF+
Sbjct: 1240 KLTSQQRHYIEIIRSSGDSLLTVINDILDFSKIEAGKLVLDVIDGDIRQLVDDMMKLFAA 1299
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+++KGIEL + + P ++ DP R RQI+ NLVGN++KFTE G++ +K+ E T
Sbjct: 1300 PAQHKGIELLYELPAEFPNYLRCDPLRLRQILNNLVGNAIKFTEEGYVLLKIQCDELT 1357
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 193/417 (46%), Gaps = 68/417 (16%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E V L V V DTGIGI ++ +F PF QADSSTSR YGGTG+GL I++ LVE+M+G +
Sbjct: 1359 EQVQLQVDVIDTGIGISPLVRDNLFKPFTQADSSTSRRYGGTGLGLVITRRLVEMMQGMM 1418
Query: 660 SFV-SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-------GFKGLKAVVVDEK 711
++ GS F + ++ K+E +PP GL+ ++V++
Sbjct: 1419 GICDTQTTRGSHF-------------WVNLPLEKAETVPPVLFENMAVLNGLRVLIVEDN 1465
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771
V + Q LN + S +++A ++ + +E +IL+++ SGE
Sbjct: 1466 LVHQQILQTELNHWQV---QSYCVENAVLALESLIQYNELHKPYHLILLDETLMQSGESL 1522
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
F + N + FK +IL+ T + E + A T + KP+R + L
Sbjct: 1523 TFIKSV----KNDYRFKQIPIILMTT--VQYELQSSLPEHLA-TPLTKPIRQQDLLNALL 1575
Query: 832 QVLSTENKRQAGRGVPNGSSFH-------QGLLRGK-KILVVDDNGVNRMVAAGALKKFG 883
+ P+ S H Q L + ++L+ +DN +N+ VA L++ G
Sbjct: 1576 SI-----------ATPHYSPIHTLSPLQTQPLPQHTCRLLLAEDNIINQEVAKDMLQQLG 1624
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
V A + + AL +L+ FD MD MP MDGFEA+ RIR+ E + +
Sbjct: 1625 CYVTIAHNGREALQRLEQ-ESFDLILMDCYMPYMDGFEASLRIRERERCLSLPPV----- 1678
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
PI+A+TA+ + + CL GM+ Y+SKP E L L + K+
Sbjct: 1679 ------------PIIALTANAMQGDRERCLSAGMNDYLSKPVIFEQLQDMLKVWLKT 1723
>gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid
protein [Agrobacterium radiobacter K84]
gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid
protein [Agrobacterium radiobacter K84]
Length = 1092
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 108/156 (69%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q L R+EAAD AKS+FLA +SHEIRTPMNG+LGM LL TDL + Q+ +
Sbjct: 534 ELQLLLARSEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDARQKTFIDIIVKS 593
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A ++ L F+ ++DV +L S + K IEL V +
Sbjct: 594 GNALLTIINDILDFSKIDAGQMRLRKAAFDPAEAVEDVATLLSSPAAEKDIELLVRATPA 653
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VP VLGD GRFRQI+TNL+GN++KFTERGH+ V+V
Sbjct: 654 VPAMVLGDAGRFRQIVTNLLGNAIKFTERGHVLVEV 689
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/428 (25%), Positives = 186/428 (43%), Gaps = 65/428 (15%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V L + VEDTG+GI + +F F Q D+S++R + GTG+GL+I+ LV+L G +
Sbjct: 698 EVMLTLRVEDTGLGISKEKLDSIFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLE 757
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
S GSTF+ +S+ +P KG + +V+D+ + + +
Sbjct: 758 VDSEWGKGSTFTVHLPMPPVA-------ARSEPRTVPVNVKGARILVIDDNEINRRILEE 810
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLT----SSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
L + G A+ K GL +SE D ++++ D
Sbjct: 811 QLQQWGFDGY-------AAEDGKTGLAILHAASEMGAPVDAVILDYHMPDMNGDEVARTI 863
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS- 835
D + F+ LI L T++ DK A +MKP+RA+++ + V+
Sbjct: 864 RADAR-----FEALSLIFL-TSMDVVGSDKEFAALNGQAHLMKPVRANVLRGTIIDVVRM 917
Query: 836 TENKRQAGRG------VPNGSSFHQGLLRGKK-----------ILVVDDNGVNRMVAAGA 878
+R G +P + +L ++ +LV +DN VN++V
Sbjct: 918 ARRQRMTGYATAVAAQLPIEAEAEAAILAVEQEVSASPVSAIDVLVAEDNEVNQIVFTQI 977
Query: 879 LKKFGATVECAASAKAALD---KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANE 935
L+ G + + A+D KL+ P MD+ MP M+G +ATR IRQ+E++A
Sbjct: 978 LQVTGLRFLVVQNGQEAVDAWLKLR-PSLI---MMDVSMPVMNGHQATRTIRQLEAEAGL 1033
Query: 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
H+PI+ +TA + D CL+ GMD Y+SKP E L ++
Sbjct: 1034 G----------------CHVPIVGVTAHALDVDRDMCLEAGMDDYMSKPISPELLEAKVR 1077
Query: 996 KFFKSKPL 1003
++ + L
Sbjct: 1078 RWLGDEAL 1085
>gi|334343013|ref|YP_004555617.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
gi|334103688|gb|AEG51111.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
Length = 914
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 114/164 (69%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
+++E+ +++ K RAE A AKSQFLA +SHEIRTPMNG++G LL DT L+++QR+
Sbjct: 370 IQLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRLNASQRE 429
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
Y AL+ LIN++LD +KIEA +LELE V F+LR L D L F+ ++ KGIE
Sbjct: 430 YLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEKGIE 489
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
LA V+ VP+ + GDP R RQ++ NLVGN+++FTERG + + V
Sbjct: 490 LACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDV 533
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 185/418 (44%), Gaps = 71/418 (16%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTG GI ++ +F F QAD+S +R +GGTG+GL+I+ LV+LM G++ S
Sbjct: 545 LRFAVSDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDS 604
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP---PGFKGLKAVVVDEKPVRAAVTQY 720
GS F FT F + Q ++ P P GL ++VD+ +
Sbjct: 605 CVGRGSVFHFTIAFA---------LAQGETPHPPAEQPSLHGLPVLIVDDNATNRRILDE 655
Query: 721 HLNRLGIM-------VKMSSSIKDASSTAKNGLTSSEDKFQPDI--ILVEKDCWISGEDS 771
+ G+ K +++++A+ + D PD+ V K+ G D
Sbjct: 656 MIRGWGMKPLAVESGPKALAALRNAAGIGRPLRLVLLDMMMPDMDGFAVAKEIARGGGD- 714
Query: 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQ 831
+ P +I+L++ + + A G A ++KP+R S + +
Sbjct: 715 ----------------ERPAVIMLSSAQKDEMARRNWATGIA-AFLLKPVRQSELLEAIF 757
Query: 832 QVLSTENKRQAGRGVP---NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
VL + + P + S H +LV +DN VN+ +A L+K G V+
Sbjct: 758 AVLKVTVREETAPPQPAPHDRPSLH--------VLVAEDNAVNQRLALRLLEKRGHRVKI 809
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A++ L + FD MD+QMPEMDGF+AT IR+ E GT
Sbjct: 810 VGDGAQAVEAL-AQDSFDVVLMDVQMPEMDGFQATAAIRERER--------------GTG 854
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS--KPLS 1004
+ H+PI+AMTA + + CL GMD Y+SKP E+ Y + F S KP S
Sbjct: 855 Q----HMPIVAMTAHAMRGDRERCLAAGMDDYISKPLRAEDFYEVVEGRFASAAKPHS 908
>gi|406892946|gb|EKD38145.1| Sensor protein, partial [uncultured bacterium]
Length = 866
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/466 (28%), Positives = 207/466 (44%), Gaps = 70/466 (15%)
Query: 559 LSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMM---------ASNGGSEDVTLMVCVE 609
L GLE GR + ++ F + +II + A N G + L+ V+
Sbjct: 198 LDGLEGDPGRVGQILINLVANSIKFTEHGAIIVKVQREVDELPPAENTGH--IGLLFSVQ 255
Query: 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
DTG GIP +F PFMQ D S++R + GTG+GL+I + LV LM G+I +R G+
Sbjct: 256 DTGSGIPEDKLPELFQPFMQVDGSSTRQHEGTGLGLTICQRLVGLMGGKIWLTTRVGAGT 315
Query: 670 TFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMV 729
TF FTA + + ++ + + K L +V+D+ + + + LN G M
Sbjct: 316 TFYFTAQLTRRTD------REPERRPVSDRIKNLNVLVIDDSTISCRILREILNGFGCMA 369
Query: 730 KMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDWKPNGHVFK 788
+ S+ +A + + G S +P D++LV SG S + +
Sbjct: 370 ATTHSLAEAVALVEKGGAS-----RPFDLVLV------SGASSA--SDCFEMTRTVKRLA 416
Query: 789 LPKLILLATNISKDECDKAKAGGFA---DTVIMKPLRASMIAACLQQVLST------ENK 839
LP I+L CD+ GG + D + +P+ + + A + +V
Sbjct: 417 LPTKIMLIGG-----CDREPPGGRSNGIDGCLPRPITSFALLAEIGKVFGEVSGYPGSGP 471
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
++ V +RG ++L+V+DN +NR A L G VE A + K A+ +L
Sbjct: 472 ERSAESVVARDEIDLKKIRGARVLLVEDNELNRKFAVALLNIMGLWVEVATNGKEAIARL 531
Query: 900 QSPH-----CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
+ +DA MDI+MP MDG+ ATR IR A+
Sbjct: 532 EEGRRGERSRYDAVLMDIEMPVMDGYTATRLIRADSFFAS-------------------- 571
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
LP++AMTA + +CL GMD Y+SKP +E L + L K +S
Sbjct: 572 LPVIAMTAHALTGIEQKCLDAGMDDYLSKPIDEPQLRKILVKHIQS 617
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ + K AE+A AKS FLA +SHEIRTPMN ++G+ L L T+L+ QRDY
Sbjct: 76 ELAQAKEEAESATRAKSDFLARMSHEIRTPMNAVIGLTNLTLKTELTPLQRDYLDDVHNA 135
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
L+ +IN++LD +KIEA + EL F+++ +L ++ +F K+ KGIEL V
Sbjct: 136 SLHLLGIINDILDFSKIEAGRFELSNQSFSVQRVLGQLVDMFRVKAGEKGIELFFLVDKS 195
Query: 487 VP-EFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
VP + + GDPGR QI+ NLV NS+KFTE G I VKV
Sbjct: 196 VPLDGLEGDPGRVGQILINLVANSIKFTEHGAIIVKVQ 233
>gi|333999276|ref|YP_004531888.1| sensory box histidine kinase/response regulator [Treponema primitia
ZAS-2]
gi|333739214|gb|AEF84704.1| sensory box histidine kinase/response regulator [Treponema primitia
ZAS-2]
Length = 1070
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 193/405 (47%), Gaps = 55/405 (13%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
T++V V D+GIGI Q ++F F QADSS SR +GGTG+GL+ISK +VE+M G I
Sbjct: 714 TILVEVTDSGIGISEEQQAKLFASFQQADSSISRRFGGTGLGLAISKRIVEMMGGAIWVK 773
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGF--KGLKAVVVDEK-PVRAAVTQ 719
S+P GSTF FT + E ++ L PG L+ + VD+ +R +
Sbjct: 774 SKPGEGSTFGFTIQTKRGSE--------TRQSLLNPGVNRNNLRILAVDDDGDIRDCFVE 825
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ ++ S D +S+ L E D+ V D +SG D +L
Sbjct: 826 F--------MRQLSLQGDTASSGDEALALIEKNGPYDLYFV--DWKMSGMDG---VELSR 872
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE-- 837
G +++ A + E D KAG + + KPL AS +A + L E
Sbjct: 873 RIKEGSTGNSVVIMISAAEWNIIEGDAKKAG--VNKFLSKPLFASSVADIINDCLGHEEA 930
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+ + N FH +L+ +D +NR + L+ ++CA + AL
Sbjct: 931 DTDKDAAVTDNFKGFH--------LLLAEDIDINREIVMALLEPTEIEIDCAENGAEALA 982
Query: 898 KL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ ++P FD FMD+QMPEMDG+EATRRIR ++++ AK+ +P
Sbjct: 983 QFTEAPDKFDMIFMDVQMPEMDGYEATRRIRALDTE--------------WAKK----VP 1024
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+AMTA+V ++CL GM+ +V KP + + +L K+ +
Sbjct: 1025 IVAMTANVFRQDIEQCLAAGMNDHVGKPLDFSEVLLKLRKYLSRR 1069
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ---RDYAQTAQICGKA--LIALIN 435
AKS FLA +SHE+RTPMN I+GM +L SST+ +DY +I G + L+ +IN
Sbjct: 561 AKSNFLANMSHEMRTPMNAIIGMTSLAK----SSTEIERKDYC-LEKIEGASIHLLGVIN 615
Query: 436 EVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP 495
+VLD +KIEA K +L FN ++ V+++ + K K ++ + + +P ++ D
Sbjct: 616 DVLDMSKIEANKFDLSDTDFNFEKLIQRVVNVINSKMEEKRLDFNIHLDGDIPPSLIADE 675
Query: 496 GRFRQIITNLVGNSVKFT-ERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
R Q+ITNL+ N+VKFT E G I +K + +K + T+L T+ G+ S
Sbjct: 676 QRLAQVITNLLSNAVKFTPEEGTIKLKA-----SFIKEEKGICTILVEVTDSGIGISEEQ 730
Query: 555 QFNTLSGLEAAD 566
Q + + AD
Sbjct: 731 QAKLFASFQQAD 742
>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
Length = 945
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 114/161 (70%), Gaps = 3/161 (1%)
Query: 362 EDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ 421
E + +K +E +AEAA+ AKS+FLA +SHEIRTPMNGI G L LL T+LS Q+++ +
Sbjct: 306 EKELYKAKE---QAEAANTAKSRFLANMSHEIRTPMNGIFGFLELLQATNLSLEQKEFIR 362
Query: 422 TAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
A+ + L+ +IN++LD +KIEA+KL +E + FNLR ++D +SL + K+ K +EL
Sbjct: 363 EAKSASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIEDAVSLLAPKAAEKNLELYT 422
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
++ VPE V+GDP R RQ++ NL+ N+VKFT +G I VKV
Sbjct: 423 MINPNVPEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVKV 463
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 189/402 (47%), Gaps = 47/402 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V+DTGIGI +F F QAD+ST+R YGGTG+GL+IS LV++M G+I S
Sbjct: 479 VKDTGIGIRKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGKIQVESIVGE 538
Query: 668 GSTFSFTAVF-----GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHL 722
GSTF F +++ FE + +G+ +VVD+ + +L
Sbjct: 539 GSTFKFDVKLKIVKGASVQKFDFEKL------------RGMNVLVVDDNDNNRKIVVSYL 586
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
G+MV K+A++ ++ + K + + ++ D ++ + A L P
Sbjct: 587 QETGLMV---FEAKNAAAAITTIISKANTKNKINTAII--DYQMTDMSAYELATTLKTMP 641
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
K KLILLA+ K E +K GF+ + KP++ + C+ VL + + +
Sbjct: 642 FA---KDVKLILLASVNQKGETKSSKEYGFS-CYLGKPVKRDDLLNCIAMVLGLKKEDEE 697
Query: 843 GRGVPNGSSFHQGLLRGK-KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
V + K KIL+V+DN +NR + LK T + A + AL K S
Sbjct: 698 KCEVVTKHIVREVKNELKPKILLVEDNVMNRKIVINILKLHDMTCDVAVNGSEAL-KAVS 756
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D FMD QMP MDG+E T +IR +E D+ H I+AMT
Sbjct: 757 EKDYDVVFMDCQMPVMDGYECTAKIRILEG-------------------DKKHTTIIAMT 797
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
A+ + ++C++ GMD Y+SKP + +++ + K + L
Sbjct: 798 ANAMEGDSEKCIEAGMDAYISKPINFDTMFKMIEANTKKREL 839
>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1493
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++E K+ AE A AKS+FLAT+SHEIRTPMN ++GM LLLD +L+ QRD+ +T + G
Sbjct: 718 LEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSG 777
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KIE+ KLELE F LR L++ L L S ++ KG+ELA +
Sbjct: 778 DALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGLELAYIIDPST 837
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKDET 538
P+ +LGD R RQ++ NLV N++KFT G + + V A++ + K+D D T
Sbjct: 838 PKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSDDSDFT 892
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 122/444 (27%), Positives = 182/444 (40%), Gaps = 88/444 (19%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI-------- 659
V DTGIGIP +R+F F Q D+ST+R YGGTG+GL+IS+ L +LM G++
Sbjct: 902 VRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLMNGKMWVASWVNL 961
Query: 660 ---------SFVS-----------RPQV---GSTFSFTAVFGKCKEYVFEDIKQSKSEDL 696
S +S RPQV GS F FT V C + D+ + S+D
Sbjct: 962 LDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIV---CSGFNTPDLGEF-SDDF 1017
Query: 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKN--GLT------- 747
G K ++V+ + + + G++ + DA + GL
Sbjct: 1018 ---LHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADALKVLHDNPGLDLIILGIN 1074
Query: 748 ---SSEDKFQPDIILVEKDCWISGE--DSGFNAQLLDWKPNGHVFKLPKLILLATNISKD 802
E I +EK I+G+ FN + ++ N V + +
Sbjct: 1075 LPDMDEATLASRIRQLEKQ-MIAGKYRQKPFNLVMFNYASNTEVLR------------RL 1121
Query: 803 ECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK-- 860
E G + KPL+ S L Q+ + + + N S + +
Sbjct: 1122 EAQGVNVAGLVN----KPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDPAIPQPHA 1177
Query: 861 --KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+IL+ +DN N+ VA L++ G + A + LD L +D MD+QMPEMD
Sbjct: 1178 NLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNRQQ-YDVILMDVQMPEMD 1236
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G EA++ I S GS + R I+AMTA+ + + CL GMD
Sbjct: 1237 GLEASKHICAAYSD--------GSDMGPRKPR------IIAMTANAMQGDREMCLNAGMD 1282
Query: 979 GYVSKPFEEENLYRELAKFFKSKP 1002
Y++KP E L LAK P
Sbjct: 1283 DYITKPVRREALAEALAKCHPISP 1306
>gi|24372448|ref|NP_716490.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
gi|24346431|gb|AAN53935.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
Length = 1765
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 190/416 (45%), Gaps = 77/416 (18%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++DV L V D+GIG+ Q ++F F QAD+ST+R YGGTG+GL+ISK LVELM G
Sbjct: 1187 NDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGS 1246
Query: 659 ISFVSRPQVGSTFSFTA---VFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
I S+ GSTF FT + K +V +++ G+ +V D+
Sbjct: 1247 IGVESQLGHGSTFFFTVKLCISSGQKLFVGQELD------------GMSILVADDNATAR 1294
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + L +G F D + + + +
Sbjct: 1295 DIMRTTLESMG--------------------------FNVDTVRSGDEAIMRCSQQEYAV 1328
Query: 776 QLLDWK-PN-----------GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA 823
L+DWK PN P++++++ + ++D + + G A I KP+ A
Sbjct: 1329 ALIDWKMPNLDGIETAKQIKQQTKNAPRILMVSAHANQDFLTQIEQLGLA-GYISKPISA 1387
Query: 824 SMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFG 883
S + + L R N + L+GK+IL+V+DN +N VA L++ G
Sbjct: 1388 SRLLDGIMNALGRSGILPVRRHQDNIAPELLLPLKGKRILLVEDNEMNLEVATEFLEQVG 1447
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
+ A + + ALDKL + FD MD QMP MDG++AT+ IRQ
Sbjct: 1448 IILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQATKAIRQ--------------- 1491
Query: 944 VDGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
R EL LP++AMTA+ + + CL+ GM+ +++KP E LY+ L K+
Sbjct: 1492 ------RPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYL 1541
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 105/156 (67%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A+AA AK FLA +SHEIRTPMN I+GM L L T L Q++Y + + ++L+
Sbjct: 1030 KDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLL 1089
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++E V F L +L+D+ +FSE++ K IEL V+ VP +
Sbjct: 1090 SIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHL 1149
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
LGDP R Q++ NL+ N++KFTERG + + + L E+
Sbjct: 1150 LGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1185
>gi|398348886|ref|ZP_10533589.1| multi-sensor hybrid histidine kinase [Leptospira broomii str. 5399]
Length = 847
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/405 (31%), Positives = 201/405 (49%), Gaps = 59/405 (14%)
Query: 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFV 662
T+ V DTGIGIP Q+++F PF Q D+S++R YGGTG+GLSIS L+++M G+I
Sbjct: 484 TIRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTGLGLSISYRLIKMMGGRIWLE 543
Query: 663 SRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP----PGFKGLKAVVVDEKPVRAAVT 718
S G+TFSF E E ++Q K++ +P PG + K +++D+ +
Sbjct: 544 SDVNKGTTFSF--------EIQAESVEQ-KNQVIPNINYPGLENRKILIIDDNATNLRIL 594
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
+ L LG+M SSS ++A S G+ P++ ++ D ++G + AQ L
Sbjct: 595 SHQLQILGLMTFSSSSKEEALSLLDLGIL-------PELAIL--DYNLAGNNGVQIAQEL 645
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
+ F P LILL+++I K AD + ++ L + L+Q+++
Sbjct: 646 RRRN----FLFP-LILLSSSIL-----DIKEREIADQLFLRQLSKPVKKKELEQIVTEIL 695
Query: 839 KRQAGRGVPNGSSFH----QGLLRGK---KILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+G N SS + + LL+ ++L+ +DN +N +A L+K G + A +
Sbjct: 696 ITGTEKGKANRSSSYLEKQKDLLQSTYPFEVLIAEDNEINLSLAKRILQKLGYSPIVATN 755
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
K L++L+ FD MD+ MPEMDG +AT+ IR + NEQ
Sbjct: 756 GKQVLNRLREAK-FDVVLMDVHMPEMDGIQATQVIRNTWPQ-NEQPY------------- 800
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
I+AMTA + + CL+ GM+ YVSKP E L L K
Sbjct: 801 -----IIAMTAAAMQGDREICLRAGMNDYVSKPIVFEELIHALRK 840
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 105/147 (71%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLA +SHEIRTPMNG++GM LLLD+DL+ +R+YA+ Q G++L+++IN++LD
Sbjct: 332 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 391
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIE+ L LE+ F++ ++ L LF + KGI+L + VP+ ++GD R RQ
Sbjct: 392 SKIESGTLRLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDIIIGDKLRLRQ 451
Query: 501 IITNLVGNSVKFTERGHIFVKVHLAER 527
++ NL GNS+KFTE+G +F+ ++++
Sbjct: 452 VLINLFGNSLKFTEKGEVFLSAEVSKK 478
>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
Length = 715
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 110/156 (70%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+++ K A+AA VAK FLA +SHEIRTPMN I+GM L+LDTDL+ TQR+Y +
Sbjct: 49 ELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTDLTDTQREYLAMVREA 108
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G +L++L+N++LD +KIEA KLELE+ +F LR L D + + ++ KGIELA V +
Sbjct: 109 GNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAHGKGIELACHVHPE 168
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VP+ +LGD R RQI+ NLVGN++KFT +G + + V
Sbjct: 169 VPDALLGDASRLRQIVVNLVGNAIKFTTQGEVVLDV 204
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 187/390 (47%), Gaps = 43/390 (11%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTGIGIP E +F F QAD ST+R +GGTG+GL+IS LV+LM G+I S
Sbjct: 216 LHFTVTDTGIGIPTDKLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGRIWAES 275
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGF-KGLKAVVVDEKPVRAAVTQYHL 722
GS F FT F E + ++++ L F ++A++VD+ + L
Sbjct: 276 ELGCGSDFHFTMKFSLAAE------RPAEAQPLEAVFPDNVRALIVDDNATNRLILNEML 329
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN-AQLLDWK 781
G+ +++ + + + ++ F+ LV DC + GED GF+ A+ + K
Sbjct: 330 GNWGMQATSVAAVAEGLAALRTAY-AARRPFR----LVITDCHMPGED-GFDLAEKI--K 381
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
+G + + ++L + + D + G A ++KP++ S + + L Q
Sbjct: 382 QDGQLSDIQLVMLTSGSEPGDIAHCEQLGVVAH--LLKPVKQSELFDAIGSALGL----Q 435
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
Q L+ +IL+ +D+ VN+ +A LKK G V A + K A+
Sbjct: 436 VAEEEAPLDEVQQ--LKALRILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVFDR 493
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
FD MD+QMPEMDG EAT +R E+ ++ H+PI+A+T
Sbjct: 494 DR-FDLVLMDVQMPEMDGLEATAAVRAKEANSDR------------------HVPIIALT 534
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLY 991
A + ++CL+ GMDGYVSKP L+
Sbjct: 535 AHAMKGDREQCLEAGMDGYVSKPIRAPELF 564
>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
Length = 717
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 195/406 (48%), Gaps = 47/406 (11%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E +TL + DTGIGIP E +F F QAD ST+R YGGTG+GLSI + + LM G +
Sbjct: 346 ETITLHARIRDTGIGIPEEKLESIFEAFRQADGSTTREYGGTGLGLSICRKIAALMHGHV 405
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S VGSTF FTA K + + IK+ L + +VVD+ ++ +
Sbjct: 406 WAESELDVGSTFHFTATLNKAPQ---QRIKRFNRVSL----ANKRVLVVDDNLTNLSILR 458
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
+ L + V +I D+S+ + E+ D+I++ D + D G+ +
Sbjct: 459 HILMAAELHV---VAIHDSSNVRSVLQQAIENHALFDLIIL--DIQMPAPD-GYALAHII 512
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+P +L T+ ++ + K GF D + KP R ++ ++++L E
Sbjct: 513 RHELAETATIP--LLAYTSSTERNAQRCKEAGF-DAFLTKPTRREILFKTIEKLLDPE-- 567
Query: 840 RQAGRGVPNGSSF------HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ P +F + + + +IL+ +DN VN+ +A L K G VE A++ +
Sbjct: 568 -EVIETAPTKETFITQYSVREEIKQSIRILLAEDNPVNQKLAVLILNKAGYQVEVASNGR 626
Query: 894 AALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D + P FD MDIQMPEMDG AT+ +R G ++V
Sbjct: 627 KAVDLFTRRPENFDLILMDIQMPEMDGLAATKELRS----------RGFNTV-------- 668
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
PI+AMTA+ + + CLK GM+ Y++KP + E ++ + K+
Sbjct: 669 ---PIVAMTANAMKGDREICLKAGMNDYITKPVKREIIFEIIEKWL 711
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 104/150 (69%)
Query: 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVL 438
++AKS+FLA +SHEIRTPMNGI+G +LLDT L Q+++AQT + AL++LIN++L
Sbjct: 195 NIAKSEFLAAMSHEIRTPMNGIIGFTDMLLDTGLDEEQQEFAQTIKRSASALLSLINDIL 254
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +K+EA KL+LE + F+ DV L K ++ IE+ + D +P V+GDPGR+
Sbjct: 255 DFSKVEAGKLDLECIPFDPEITAQDVCDLVRPKVASRPIEVLCRIDDTLPANVMGDPGRY 314
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAERT 528
RQ++ NL+GNS KFT++G + + + + + T
Sbjct: 315 RQVLVNLMGNSAKFTKKGELELAIAVDDET 344
>gi|451819248|ref|YP_007455449.1| multi-sensor hybrid histidine kinase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785227|gb|AGF56195.1| multi-sensor hybrid histidine kinase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 946
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 116/159 (72%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE A+ AKS+FLA +SHEIRTPMNG++G L+LL TDL+++QR++ T ++ + L+A+I
Sbjct: 439 AEEANRAKSEFLANMSHEIRTPMNGVVGFLSLLEKTDLNTSQREFIDTIKVSSETLLAVI 498
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KIEA K+ELE + FN+ I++ + LF+ +++ K I+L + + K+P+F+ GD
Sbjct: 499 NDILDISKIEAGKMELENIPFNITTIIERTVFLFNGRAKEKEIKLNLSIDSKIPDFLKGD 558
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTD 533
+ RQ+I+NL+ N+VKFT G I V+ L +T V T+
Sbjct: 559 STKLRQVISNLISNAVKFTNEGEILVEASLVNQTEVDTE 597
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 24/142 (16%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD--KLQSPHCFDACFMDIQMPEMD 918
+IL+V+DN +NR +LK G + + A + AL+ K++ H FMD QMPEMD
Sbjct: 701 RILLVEDNEINRRFFINSLKLIGLSCDIAVNGLEALNACKIKDYHI---IFMDCQMPEMD 757
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G+EATR+IRQ+E+ GS H I+AMTA + +EC K GMD
Sbjct: 758 GYEATRKIRQLEA---------GSK----------HTTIIAMTAHSMKGDANECFKAGMD 798
Query: 979 GYVSKPFEEENLYRELAKFFKS 1000
Y+SKPF E + L K K+
Sbjct: 799 DYLSKPFVFEQMVEMLQKHSKT 820
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
D + V DTGIG+ ++F PF QADSS++R YGGTG+GL+I K +VELM G I
Sbjct: 595 DTEIYFKVRDTGIGMNEHEMAKLFKPFSQADSSSTRKYGGTGLGLAICKKIVELMGGTIG 654
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED 695
VS+ G+TF F + E E+I K ED
Sbjct: 655 VVSKKDEGTTFYFNLILNNPSE---EEIFNLKQED 686
>gi|347757673|ref|YP_004865235.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
gi|347590191|gb|AEP09233.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
Length = 1341
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 119/178 (66%), Gaps = 1/178 (0%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+ GA + ++E +++ + A++A+ AKS FLA +SHEIRTPMNGI+GM LLL+T
Sbjct: 636 IVGAHTDVTEIEQANRNLKKARDEADSANRAKSDFLANMSHEIRTPMNGIIGMTHLLLET 695
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
L S QR YAQT ++L+ +IN++LD +KIEA K+ELE + F+ + + +DV +
Sbjct: 696 KLDSRQRHYAQTVGQSAESLLQIINDILDFSKIEAGKMELENIPFDFQLLCEDVSEMMFV 755
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV-HLAER 527
+++ KGIE + P+F+ GDP R RQI+ NL GN++KFT+ G++ VKV HL R
Sbjct: 756 RAQEKGIEFLLSWDPDCPQFLFGDPVRIRQILFNLCGNAIKFTDEGYVLVKVKHLGTR 813
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 198/412 (48%), Gaps = 59/412 (14%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L + V DTGIGI Q VF F QAD ST+R YGGTG+GL+ISK L ELM G IS S
Sbjct: 819 LRISVVDTGIGIAKEKQALVFNKFDQADGSTTRRYGGTGLGLTISKQLAELMGGHISLTS 878
Query: 664 RPQVGSTFSF---TAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
P VGSTFS +V + K YV + + ED G++A+++D+ + +
Sbjct: 879 EPGVGSTFSVHLTLSVAPRPKSYV----RAPELEDFDG--TGIRALIIDDNIMSCEIFDT 932
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL-- 778
+L+ +G+ V+ S+ + S + + D+ +P L+ D + G D L+
Sbjct: 933 YLSSIGMNVETESNPYNVLSKMERAV----DEGRPYSFLI-VDYAMPGMDGISLCSLIAQ 987
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
+ K G + I+ + + + ++ + G + KP+R S + + + +
Sbjct: 988 NKKIQGAI-----AIMATSQPGRTDIERMQRAGIK-GYLSKPVRPSELISVIATLWKA-- 1039
Query: 839 KRQAGRGVPNGSSF-----HQGLLRG--------KKILVVDDNGVNRMVAAGALKKFGAT 885
R+ G + + F G +RG ++LVV+DN VN+ V L +G
Sbjct: 1040 -RKTGEDMGLVTRFTLDEQWAGRIRGPDDLYFKDTRVLVVEDNQVNQEVMVAMLDHYGIR 1098
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
+ + A+ ++ FD FMD QMP MDG+EATR +R+ + GG +
Sbjct: 1099 SAVVDNGRDAV-RIMREQDFDLVFMDCQMPIMDGYEATRTVRKEK---------GGQDI- 1147
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
I+AMTA+ + ++C+ GMD Y+SKP E++L LA +
Sbjct: 1148 ----------KIIAMTANAMKGDREKCIAAGMDDYLSKPVVEKDLEAILATW 1189
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 105 YFKNPSALDQDTFAEYTTRTAFER-PLLSGVAYAPRVVDAQREQFE--RQHGMTITTMKS 161
+F ++D+ F E T AF+R P + + + PRV+D++R +FE RQ +K+
Sbjct: 239 FFNASDSVDRREF-EVFTYNAFKRNPGILAMDWMPRVLDSERAEFEALRQQEYPGFFIKA 297
Query: 162 -------EPSPIRDEYAPVMFYQEPMSHVKSL--DMMSGEEDRENILRARATGKAVLTRP 212
E SP RDEY P+ F EP S + + D+ + E +RAR +G AV+T
Sbjct: 298 PVGPDAWERSPRRDEYYPIEFI-EPDSFNRYIGYDLSANEGRYAAFIRARDSGNAVITSR 356
Query: 213 FRLLG---SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPF 255
+LL S G +L PVY+ + + V +R A G++ G +
Sbjct: 357 IKLLPDEESDQYGFLLVLPVYE-RGALITNVAQRRDALMGFVAGGY 401
>gi|345871481|ref|ZP_08823426.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343920401|gb|EGV31135.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1159
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 190/410 (46%), Gaps = 51/410 (12%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGI +AQ R+F PF QAD+ST+R +GG+G+GL+I + LV+LM G I
Sbjct: 571 VRLKFSVIDTGIGIDEAAQTRLFQPFSQADASTTRRFGGSGLGLAICRRLVDLMGGHIGV 630
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF F F D+ + ++ +P G + ++ + PV
Sbjct: 631 HSALDEGSTFWFEIAF---------DLAEQQAPQVPQGESQTRVLIAENNPVIRKALATT 681
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD-- 779
+ LG + ++S A L E + Q ++L+ D + D AQ +
Sbjct: 682 VATLGWSARQAASGNQALEVV---LADPELQGQNAVVLL--DSRMPDLDGIATAQAIRTA 736
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
PN + P + +L +D + G D V+ KP+ S + V+ +
Sbjct: 737 LPPN----RQPLIFVLGVP-RRDSLQDSPETGAVDAVLSKPVTPSQL---YNAVIRKRSH 788
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
R S+ Q L+ G ++LVVDD+ +NR VA+ GA + A + A+D L
Sbjct: 789 RLGEPPQTQPSAISQRLV-GLRLLVVDDSDINRKVASNIFDNEGAEIHLAGDGREAVDWL 847
Query: 900 QS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ P D MD+QMP MDG +ATR IR+ S A LP++
Sbjct: 848 IAHPDAVDLVLMDVQMPVMDGHDATRLIRRTPSIA--------------------QLPVV 887
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEEN---LYRELA--KFFKSKPL 1003
A+TA + L+ GMDG++SKPF+ L R LA K SKP+
Sbjct: 888 ALTAGALREQETAALEAGMDGFISKPFDVSKAVALIRRLAERKEDNSKPM 937
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 99/171 (57%), Gaps = 2/171 (1%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
+V + ++++ + +AE +KS FL +SHEIRTPMN +LG+ +L DL D
Sbjct: 398 TRVAERTRELEQARRQAERLARSKSDFLTNMSHEIRTPMNAVLGLGYMLEQQDLPEDALD 457
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS-RNKGI 477
A GKAL+ +IN++LD +KIE+ ++E+E F L +LD++ ++ + + + + +
Sbjct: 458 LAHKINQSGKALLGIINDILDFSKIESGRIEIEHAPFALSGVLDNLATIMTATADQEQDL 517
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
EL V D ++GD R Q++ NL N++KFT G + V + ERT
Sbjct: 518 EL-VITPDCFDLTLIGDALRLGQVLINLSSNAIKFTRSGLVEVHIETLERT 567
>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
Length = 758
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 109/155 (70%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++ K AEAAD AKS FLA +SHEIRTPMNG+LGM LLL T L+ Q D A+T G
Sbjct: 216 LKRAKDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLATPLNPEQHDLAETLCQSG 275
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
++L+ +IN++LD +KIEA ++ELEA+ F+L L+ L L +E + K +EL V + V
Sbjct: 276 ESLLTIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEAAARKHLELVVNIDPAV 335
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P V GDPGR RQI+ NLVGN++KFTE+G + VKV
Sbjct: 336 PRHVRGDPGRLRQILLNLVGNAIKFTEKGEVVVKV 370
Score = 155 bits (391), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/418 (28%), Positives = 195/418 (46%), Gaps = 40/418 (9%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++ + + V L V DTGIGIP QE++F PF+QAD+ST+R +GG+G+GL I
Sbjct: 367 VVKVTVDHNWPNRVLLRFAVTDTGIGIPEWVQEKLFQPFVQADTSTTRRFGGSGLGLVIC 426
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L ELM G I S+P GSTF FT V + + +G A++V
Sbjct: 427 KRLAELMSGSIGVESKPNEGSTFWFTVELKHAFHPVTVGVVPLST------LRGHHALIV 480
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D+ ++ ++ N + + S+ +A T++ F LV D + G
Sbjct: 481 DDNATNRSLLKHLCNAWSLRHSVMESVDEALVELHRA-TAAGTPFD----LVITDHHMPG 535
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLAT---NISKDECDKAKAGGFADTVIMKPLRASM 825
D A ++ P L+LL + + + + D+ + FA +KP+ A
Sbjct: 536 RDGLDLAAAIN---RDTTIPRPALVLLTSRGERLPQSQLDEYR---FA-ACELKPVHARS 588
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK--KILVVDDNGVNRMVAAGALKKFG 883
+ L +VL+ + R +P+G+ K +IL+ +DN VN+ V L+ G
Sbjct: 589 LHTTLARVLA--HIRPGVPALPDGNGVKPAAPPAKEARILIAEDNPVNQKVTLLQLRNLG 646
Query: 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSS 943
+ + + L+ L+ + MD QMPEMDG EATR+IR+ ++ + + +
Sbjct: 647 YPADVVPNGREVLEALRR-KAYALVLMDAQMPEMDGVEATRKIREAQAAGDRTIPSP--- 702
Query: 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
L I+AMTA+ + + CL GMD Y++KP + +L LA++ +
Sbjct: 703 -----------LRIIAMTANAMTGDRELCLAAGMDDYLAKPVKPGDLRDMLARYLPDE 749
>gi|383812706|ref|ZP_09968133.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
gi|383298116|gb|EIC86423.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
Length = 921
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 108/153 (70%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L T LS TQ DY QT + L+
Sbjct: 282 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLSPTQTDYLQTIERSANNLL 341
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN+VLD +K+EA KL LE + F+LR +LD+V+ L + + +KG+EL + V VPEFV
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHSAHDKGLELTINVHSNVPEFV 401
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
LGDP R +Q++TNL+GN++KFTE G+I + V L
Sbjct: 402 LGDPMRLQQVVTNLLGNAIKFTENGNIDINVEL 434
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 180/435 (41%), Gaps = 79/435 (18%)
Query: 579 DAEGFQSNASI-INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F N +I IN+ + + V L + DTGIGI Q ++F F QAD+S +R
Sbjct: 418 NAIKFTENGNIDINVELRSQKNAQVELEMQFHDTGIGISERQQAQLFQAFRQADASITRR 477
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
+GGTG+GL I++ LV+ M G ISF S+ GSTF F +V ++ +S + P
Sbjct: 478 HGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWF---------HVTLELNESHHQR-P 527
Query: 698 PGFKGL---KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQ 754
L K ++ P + L+ + I V +S
Sbjct: 528 RSMACLRDKKLAYIEANPTATKAVKEMLSSMPIEVIHRTS----------------QALL 571
Query: 755 PDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDK---AKAGG 811
PD D + G N L D++ +L +L+ +CD+ A
Sbjct: 572 PD---EHYDFIVYGMPILLNHHLNDYEE-----RLQQLL--------SQCDRLILALPSQ 615
Query: 812 FADTVIMKPLRASMIAACLQQVLSTEN-----KRQAGRGVPNGSSFHQGLLRGKKILVVD 866
F + + L+ + ACL + LS+ + +S Q L ++ VD
Sbjct: 616 FQ--ISAEQLKDKGVYACLNKPLSSVRLLPYLLEDPKNFIEEDNSHDQRL--PMTVMAVD 671
Query: 867 DNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRI 926
DN N + L++ T S + A++ ++ + D MDIQMP +DG + I
Sbjct: 672 DNPANLKLIGALLEELVETTLLCNSGEEAIELAKNVN-MDVILMDIQMPNIDGIRTSELI 730
Query: 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
+ + PI+A+TA + ++ +K GM+ Y+SKP +
Sbjct: 731 HLLPH--------------------HITTPIVAVTAHSLSGEREQFIKAGMEDYLSKPID 770
Query: 987 EENLYRELAKFFKSK 1001
E L LA++ S+
Sbjct: 771 EGMLKVVLARYHSSQ 785
>gi|365538837|ref|ZP_09364012.1| signal transduction histidine kinase-like protein [Vibrio ordalii
ATCC 33509]
Length = 1273
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 201/411 (48%), Gaps = 55/411 (13%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+ TL+ V DTGIG+ + +F F QA+SS SR YGGTG+GLSI K LV LM+G IS
Sbjct: 691 NCTLLFKVSDTGIGMTQEQKAIIFNGFSQAESSISRKYGGTGLGLSIVKRLVSLMQGDIS 750
Query: 661 FVSRPQVGSTFSFTAV--FGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
S+ GS F+FT F ++ + Q GLK +VV++ +
Sbjct: 751 VTSQLDKGSEFTFTITLNFSPVCNDIYSHLTQ-----------GLKILVVEDNETARLIL 799
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
Q L +LG V + + +A + + +E D+ V+ W + G A
Sbjct: 800 QDILQKLGCQVFAAPNADEALAQLHHLAQQNE---VIDLAFVD---WKLPDMDGL-ALTR 852
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDK--AKAGGFADTVIMKPLRASMIAACLQQVLST 836
K ++ K+P L+++ T + DK +TV++KP+ +I Q +++T
Sbjct: 853 SIKNQENLKKIP-LVIMITAFGLEILDKHLEDTHELLETVLIKPVTPELIK---QTIINT 908
Query: 837 ENKRQAGRGVPNGSSFHQ----GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
RQ+ V +FH+ L G IL+V+DN NR+VA L++ GAT+ A
Sbjct: 909 ---RQSKDAV-FAETFHRINSNDSLSGISILLVEDNPTNRLVATELLRQCGATIIEAEDG 964
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
ALD L++ F MDIQMP MDG+E TR+IRQ E K ++
Sbjct: 965 FKALDILKNQQ-FSLVLMDIQMPGMDGYETTRKIRQ-EMKFHQ----------------- 1005
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
LPILAMTA+ L GM+G+++KPFE ++ +++ F K L
Sbjct: 1006 --LPILAMTANARPEDKATSLAAGMNGHIAKPFEITDVVKKIQHFVTQKNL 1054
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G LVG++ G A + + ++ E K +AE A+ AKS FLA +SHEIRTPMN ILG+
Sbjct: 506 GQLVGFL--GIAYDLTEQLQKEKELAEAKEQAEYANRAKSDFLANMSHEIRTPMNAILGL 563
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
L + L+T+LSS Q DY Q K+L+ L+N++LD +K+EA KLELE F+L +L +
Sbjct: 564 LQMTLNTNLSSQQIDYLSKTQSAAKSLLVLLNDILDFSKVEAGKLELEQYSFSLPDLLQE 623
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
L S + K IE+ V+ VP ++GD R RQI+ NL N++KFT G I + +
Sbjct: 624 TAVLLSSSLQEKDIEIIYDVAPDVPTILIGDSLRLRQILLNLASNAIKFTNSGEIKISI 682
>gi|256828314|ref|YP_003157042.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577490|gb|ACU88626.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 955
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 194/399 (48%), Gaps = 43/399 (10%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
VTL V DTGIGI + R+F F QAD++T+R YGGTG+GLSIS+ LV++M G I+
Sbjct: 583 VTLRFEVSDTGIGIDPAVLPRLFTSFEQADAATARVYGGTGLGLSISRRLVQIMGGDITV 642
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
SRP GS F FT VFG + + + E G L +VV++ P A +
Sbjct: 643 RSRPGEGSIFEFTVVFGPDPQ------DEVRGEANAAGHGSLNVLVVEDNPASRAAMEEV 696
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
LG+ + + + +AS D D+ILV+ W + G A L +
Sbjct: 697 ATCLGLRHRFAGTAAEASQLG--------DAENFDLILVD---WNLPDMIGPEAVTL-LR 744
Query: 782 PNGHVFKLPKLILLATNISKDECDKAK-AGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
+ ++P + L + ++ E + + G ++ KP AS + L+Q+ S++
Sbjct: 745 SSERTARVP--VALMASPARPEMENLRLQGSGVQGILAKPFTASAVEVLLRQIASSDKSA 802
Query: 841 Q-AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
A + + +G ++L+ +DN N+ + L + G +E A + A+ ++
Sbjct: 803 ALADAHTLADAPYDLEQAQGLRVLLAEDNLFNQELLGVILTEAGVEMEIADNGAEAVRRV 862
Query: 900 -QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MD+ MP MDGFEATR IR N+Q +G LPI+
Sbjct: 863 TEGGAPLDVVLMDVHMPLMDGFEATRTIR------NDQRFSG--------------LPII 902
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
AMTAD+ CL+ GMD +++KP + + L+R L K+
Sbjct: 903 AMTADITAEDKARCLEAGMDDHLTKPVDTDELFRILVKW 941
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 84/160 (52%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEA +S FLA++SHEIRTPM +LG L L L R Y L+ +I
Sbjct: 423 AEAMAQTRSSFLASMSHEIRTPMTAVLGFLNLSLHLRAQGQLRQYLLKINAAANHLMGII 482
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD AKIEA K+ELEA F + +L D L + G EL V V +P V GD
Sbjct: 483 NDILDLAKIEAGKVELEAKPFEVETLLQDTADLLVSGAFENGNELVVSVQPGLPRRVTGD 542
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDA 534
R +Q++ NL N+VKFT G + + VH A DA
Sbjct: 543 SLRLKQVLLNLSSNAVKFTHGGTVRLAVHAAADATPVHDA 582
>gi|365101447|ref|ZP_09332077.1| signal transduction histidine-protein kinase BarA [Citrobacter
freundii 4_7_47CFAA]
gi|363646997|gb|EHL86226.1| signal transduction histidine-protein kinase BarA [Citrobacter
freundii 4_7_47CFAA]
Length = 918
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 159/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 169/413 (40%), Gaps = 88/413 (21%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG----------FKGLKAVVVDEK 711
++G SF + + + F S DL P G + V+
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----ISLDLNPNVLVDRSTTLCLAGKRLAYVEPN 545
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILV------EKDCW 765
A T L+ + V S S +GL +D + DI+L+ +
Sbjct: 546 ATAAQCTLDILSETPLEVIYSPSF--------SGL--PKDHY--DILLLGIPVTLREPLT 593
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
+ E A + D+ L+L ++ +K K GG A ++KPL ++
Sbjct: 594 MQHERLASAAAMTDF-----------LLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTR 641
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVN-RMVAAGALKKFGA 884
+ L + + A + + S ++ VDDN N +++ A K
Sbjct: 642 LLPALTEYCQLNHS--ADPLLVDESKI------AMTVMAVDDNPANLKLIGALLEDKVQH 693
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
V C S A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 694 VVLCD-SGHQAVDRARQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT--------- 742
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EE+ L+ L ++
Sbjct: 743 -----------PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
Length = 885
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 126/198 (63%), Gaps = 2/198 (1%)
Query: 331 WTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVS 390
W ++T GL+VG + I +K + M +K A+AA+ AK +FLA +S
Sbjct: 190 WLQMSTVPVRSGQGLVVGSVSVARDISDLK-RTESELMTAMK-EAQAANRAKGEFLAAMS 247
Query: 391 HEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLEL 450
HEIRTP+NG++G L +T+L + QR Y T CG L++L+N+VLD +KIEA +L L
Sbjct: 248 HEIRTPINGVIGASELCQETELDAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNL 307
Query: 451 EAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSV 510
E + FN A+L++V+ F+ + KGIEL + D++P++V+GDP R +QI NL+GN+V
Sbjct: 308 EQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNAV 367
Query: 511 KFTERGHIFVKVHLAERT 528
KFTE G I + H+ ER+
Sbjct: 368 KFTEAGEIVLSAHIVERS 385
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 191/385 (49%), Gaps = 40/385 (10%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI + +E +F F Q D ST+R YGGTG+GL+I K L ELM G +S SR
Sbjct: 395 VRDTGIGISETRREAIFSSFTQEDMSTTRRYGGTGLGLAICKELTELMAGSLSVDSRVGE 454
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLP--PGFKGLKAVVVDEKPVRAAVTQYHLNRL 725
GSTF+ E FE E +P L+ +VVD+ P + Q
Sbjct: 455 GSTFTL--------EVPFELSSTPGIEAVPFNSELVDLRVLVVDDNPTNREIYQRMCRGW 506
Query: 726 GIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGH 785
G + +S +A ++ S++D F+ +IL ++ ++G D L N
Sbjct: 507 GYRCETASEGGEALRMLEH-YASTDDPFRL-VILDQQMMGVTGLD------LASLIRNRQ 558
Query: 786 VFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845
+ K+ILL++++++ E ++A + A + KP++ S++ L+ +L T R G
Sbjct: 559 EMRDLKMILLSSSLNRSEAERAASLKIA-RALAKPIKRSVL---LEVILETFGIRSPLCG 614
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
+ S+ IL+ +DN VN+ +A LKK G V A + AL+++ + H F
Sbjct: 615 DLDVSAAEAEKASTLHILLAEDNEVNQNIAKRRLKKLGHEVTVAVNGHEALEQV-AQHDF 673
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MDIQMP MDG+EAT+ IR +E + DG ++ H I+AMTA +
Sbjct: 674 DCILMDIQMPGMDGYEATQEIRNLEIQ------------DGRSR----HF-IVAMTAHAM 716
Query: 966 HATFDECLKCGMDGYVSKPFEEENL 990
+ C MD Y+SKPF E L
Sbjct: 717 EGDAERCFANDMDEYISKPFRVERL 741
>gi|398842018|ref|ZP_10599222.1| PAS domain S-box [Pseudomonas sp. GM102]
gi|398106973|gb|EJL96986.1| PAS domain S-box [Pseudomonas sp. GM102]
Length = 1463
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 204/429 (47%), Gaps = 43/429 (10%)
Query: 579 DAEGFQSNASIINMMASNGGSED-VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRH 637
+A F I+ M G +D V L V DTGIG+ R+F F QADSST+R
Sbjct: 863 NAAKFTERGEIVVGMEEVGVQDDRVQLHFWVRDTGIGMTAEQCSRMFQSFSQADSSTTRK 922
Query: 638 YGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697
YGGTG+GLSISK LVELM G I S P VGSTF F G + + + K+++L
Sbjct: 923 YGGTGLGLSISKKLVELMDGHIWVESEPGVGSTFHFQVRLG--VQQGVQPRRMFKADEL- 979
Query: 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-D 756
G++ +VVD+ + G+ V ++ + S A L +E K P D
Sbjct: 980 ---LGMRVLVVDDNASAREILSGMARSFGLEVDVAHN----GSLALRMLADAEHKALPYD 1032
Query: 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILL-ATNISKDECDKAKAGGFADT 815
++L+ D + G D + + + + P +I++ A + + + G
Sbjct: 1033 LVLM--DWRMPGMD---GVETVSRMHSASLMHTPSVIMVTAFGREEAREEAERQGIQLPV 1087
Query: 816 VIMKPLRASMIAACLQQVLSTENK---RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNR 872
V+ KP+ S + + VL K R R N S+ L G ++L+V+DN +N+
Sbjct: 1088 VLTKPVTPSSLLEAIGVVLGRGPKGDTRADERSQQNASTVAS--LNGARLLLVEDNELNQ 1145
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
+A L+ G + A + ALD L FD MD QMP MDG+ AT++IRQ + +
Sbjct: 1146 ELACELLESVGIRLRLARHGQEALDILAEDGNFDGVLMDCQMPVMDGYTATQQIRQ-QPR 1204
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
N LP++AMTA+ + + L GM+ ++SKP + ++++
Sbjct: 1205 FNA-------------------LPVIAMTANAMDGDRERALSSGMNDHISKPLDVDDMFA 1245
Query: 993 ELAKFFKSK 1001
LAK+ + +
Sbjct: 1246 TLAKWIRPR 1254
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 89/140 (63%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDR 440
AKS+FLA +SHEIRTPMN I+GM L L TDL S QR+Y + + L+ +IN++LD
Sbjct: 736 AKSEFLANMSHEIRTPMNAIIGMSHLALRTDLDSRQRNYIEKVHRSAENLLGIINDILDF 795
Query: 441 AKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQ 500
+KIEA ++ LE F L +LD ++ K+ +KG+EL +P +LGDP R Q
Sbjct: 796 SKIEAGRMSLEQTPFRLEDVLDSFAAMIGLKTEDKGLELLFQTPPDLPTALLGDPLRLGQ 855
Query: 501 IITNLVGNSVKFTERGHIFV 520
++ NL N+ KFTERG I V
Sbjct: 856 VLINLGNNAAKFTERGEIVV 875
>gi|343511277|ref|ZP_08748451.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
gi|342798610|gb|EGU34209.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
Length = 1816
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 195/398 (48%), Gaps = 42/398 (10%)
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIG+ R+F F QAD+ST+R YGGTG+GL+ISK L E+M G I S
Sbjct: 1148 SVSDTGIGMTKEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWVESESG 1207
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTF FTA FG E + + P K + ++VD+ + + L L
Sbjct: 1208 QGSTFFFTAQFGLSSEIPQQPVLA------PESMKEVSVLIVDD----SVAAREILFSLC 1257
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVE-KDCWISGEDSGFNAQLLDWKPNG 784
+K ++ + + + A + +E+ Q D+IL + K + G G +L+ +
Sbjct: 1258 QSLKFNADVASSGAEALEKIRHAENNEQHFDVILSDWKMPQMDGIALGQQIELM--HQSK 1315
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---NKRQ 841
+ LP +++ T KD+ + G + KP+ +S + L +V++ E NK
Sbjct: 1316 EIATLPHFVMV-TAYDKDDMLANRQGVNIVASMTKPVSSSTLLDTLSRVMTKEGITNKTN 1374
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ +S QG + G +IL+V+DN +N+ +A L+ G V A + + A+D L
Sbjct: 1375 TSNKL--DTSIAQG-IAGARILLVEDNAINQEIATELLQMVGMDVTTANNGQEAVD-LVG 1430
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
FD MDIQMP MDG++AT+ IR T + D+ LPI+AMT
Sbjct: 1431 SQDFDLVLMDIQMPVMDGYQATQAIR------------------NTGQYDD--LPIIAMT 1470
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
A+ + ++CL GM+ ++ KP +++ L + +
Sbjct: 1471 ANAMSGDKEKCLAAGMNDHLPKPINPNQVFQALVDWIE 1508
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 111/164 (67%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE A AKS FLA +SHEIRTPMN I+GM L + TDL+ Q DY Q ++L+
Sbjct: 983 KQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQTDLNKKQADYVNKIQTSAESLL 1042
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL+LE F+L + +D+++ + S++++ K +EL V + ++P +
Sbjct: 1043 GIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVVSQRTQEKDLELLVDLDPQLPTHL 1102
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535
+GDP R QI+ NL N++KFT++G I VK L E++ K +A+
Sbjct: 1103 IGDPLRLGQILLNLANNAIKFTDQGEIIVKAELIEQSDDKLEAR 1146
>gi|427707466|ref|YP_007049843.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
gi|427359971|gb|AFY42693.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
Length = 1567
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 112/156 (71%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+Q+ K +AEAA+ AKS+FLA +SHEIRTPMN ++GM LLLDTDL+ QRD+ +T G
Sbjct: 876 LQQAKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTELLLDTDLTPQQRDFVETVHTSG 935
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KIE+ +LELE F+L+A ++ V+ L + K+ K IEL + +V
Sbjct: 936 DALLTIINDILDFSKIESGRLELEEKPFDLKACVEQVIDLLAPKAAQKQIELIYLIHPQV 995
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
P ++GD R RQ++ NL+ N++KFT++G + + V+
Sbjct: 996 PTQIIGDITRLRQVLMNLLNNAIKFTQQGEVVLSVY 1031
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 171/426 (40%), Gaps = 56/426 (13%)
Query: 591 NMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKC 650
N + + ++ ++DTGIGI R+F PF QAD+S +R YGGTG+GL IS+
Sbjct: 1033 NHLETQNLDTSCKILFSIQDTGIGITPEKMARLFQPFAQADASMTRLYGGTGLGLVISQR 1092
Query: 651 LVELMRGQISFVSRPQVG--------------STFSF--TAVFGKCKEYVFEDIKQSKSE 694
L E+M G + SR +G STFS + V + S+
Sbjct: 1093 LSEMMNGSLWVESRGCIGGNPDPGWQNSKPVLSTFSHHGATFYFTITSTVLTNAPSSEVT 1152
Query: 695 DLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGL---TSSED 751
G + ++VD+ P + + + + ++ S A + G+ + D
Sbjct: 1153 TSVVQLAGKRLLIVDDNPTNSKILSLQVQFWQMQTYIAESSAAALALLAQGMEFDIAILD 1212
Query: 752 KFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGG 811
+P I D A+ + +P G LP L+LL + + + C G
Sbjct: 1213 LPRPKI------------DGLELARAIRQQPGGQ--NLP-LVLLTSLGTPEICRDFNDVG 1257
Query: 812 FADTVIMKPLRASMIAACLQQVLSTE-NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
+ KP++ S + L R + H +ILV +D+ V
Sbjct: 1258 LV-VCLNKPIKQSQLHYVLTHTCGNNLLPANISRAYISPFDIHLAEKMPLRILVAEDSLV 1316
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N+ VA L+K G V+ + + LQ +D MDI MPEMDG E ++ I Q
Sbjct: 1317 NQKVALLMLQKIGYQVDVVGDGREVIQALQH-QPYDVVLMDIHMPEMDGLETSQIISQQW 1375
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+ I+A+TA+ + + CL GMD Y+SKP + L
Sbjct: 1376 EASTRPY-------------------IIAITANAMRGDREACLAAGMDDYISKPIQMAEL 1416
Query: 991 YRELAK 996
+ L K
Sbjct: 1417 VKALRK 1422
>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
Length = 762
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 128/206 (62%), Gaps = 23/206 (11%)
Query: 325 QKASTPWTALTTAFFL-FVIGLLVGYILYGAAIHIVKVEDDF-------HKMQELKVRAE 376
+ S PW A + L + +G+L ED F H +QE A+
Sbjct: 190 HRTSVPWYASREFWALNYSVGVL---------------EDAFAERNEREHALQEACKAAD 234
Query: 377 AADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINE 436
A+ AKS+FLA +SHEIRTPMNG++GM L+LDT+L Q+ YA+T G AL+ +IN+
Sbjct: 235 IANRAKSEFLANMSHEIRTPMNGVIGMAELILDTELDEDQQMYAETISKSGSALLTIIND 294
Query: 437 VLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPG 496
+L+ +KIEA K+EL+ FNL+ ++DV++L S ++ KG+E+ + + +PEF GD G
Sbjct: 295 ILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKGVEITLRYAPDLPEFFTGDVG 354
Query: 497 RFRQIITNLVGNSVKFTERGHIFVKV 522
R RQ++TN+VGN++KFT G++ + V
Sbjct: 355 RVRQVVTNIVGNAIKFTSTGYVAIDV 380
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 109/428 (25%), Positives = 193/428 (45%), Gaps = 55/428 (12%)
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
+A F S + ++ G + L + V DTGIGIP + +F F Q DS+ +R +
Sbjct: 366 NAIKFTSTGYVAIDVSGAKGPKGYQLGIEVLDTGIGIPEERLDDIFSAFEQVDSAATRSF 425
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
GTG+GL+IS L+ LM G+++ S GS F+ +C + + + D
Sbjct: 426 EGTGLGLAISSRLLSLMGGRVTVKSVAGKGSVFTIRLPLTEC-----DAVPSVQEGDF-- 478
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII 758
FKGL ++VD+ + ++ L G+ + S A L D +
Sbjct: 479 DFKGLTCLIVDDLELNRSILSERLTSWGVQCFQAES-------ANRALELLAD------L 525
Query: 759 LVEKDCWISGEDSGFNAQLLDWKPNGH-VFKLPKL----ILLATNISKDECDKAKAGGFA 813
+EK C + + + D + + K+P+ I++ +++ + +
Sbjct: 526 RLEK-CHLDFAILDYQMPVTDGRELAKCIHKIPEFAQVPIVMLSSVEQAMARSVREVENI 584
Query: 814 DTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQG----LLRGKKILVVDDNG 869
+ +KPLRAS + + +VL+ +P+ S + + KK+L+ +DN
Sbjct: 585 CEIALKPLRASHLRQVINRVLNVGE-------LPSIPSLPKSEPEVKTQYKKLLIAEDNR 637
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
N++V LK + A + A++ + D MD+ MP MDG EAT +IR++
Sbjct: 638 TNQLVVTRMLKNDNYEITIAGNGAEAVELFKKDRP-DLILMDMMMPVMDGVEATLKIREL 696
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
E+ A+E PI+A+TA+ + A ++CL GMD ++SKP +++
Sbjct: 697 EAVAHEA-----------------GCPIIALTANALEAHKEKCLAAGMDDFLSKPINKKS 739
Query: 990 LYRELAKF 997
L L K+
Sbjct: 740 LLETLEKW 747
>gi|357633167|ref|ZP_09131045.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
gi|357581721|gb|EHJ47054.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
Length = 1507
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 183/385 (47%), Gaps = 87/385 (22%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ E K +AE A+ KS+FLA +SHEIRTPMNGILGM L L+ DL R++ Q
Sbjct: 1115 ELLEAKQKAERANRTKSEFLANMSHEIRTPMNGILGMTQLALNRDLPDDVREFLQLVHQS 1174
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G++L+ +IN++LD +KIEA ++ LE F+L +++ L +R+KG+ ++
Sbjct: 1175 GQSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLGLLARDKGLTFLFSIAPG 1234
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEE 546
VP+ V+GD GR RQI+TN+VGN++KFT+RG + VKV LAE + +LL +E
Sbjct: 1235 VPDRVIGDKGRLRQILTNMVGNAIKFTKRGRVEVKVRLAE----IQEPGRASLLFLIKDE 1290
Query: 547 GVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606
G+ G+ +A + ++KF+ + + Q GG
Sbjct: 1291 GI------------GISSAQIHSIFEKFEQIASSAHVQY-----------GG-------- 1319
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
TG+G L+ISK LVE+M G I S
Sbjct: 1320 ----TGLG------------------------------LAISKALVEMMGGVIQVESELH 1345
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP--------GFKGLKAVVVDEKPVRAAVT 718
GSTFSF K E E PP G LK ++V++ V +
Sbjct: 1346 RGSTFSFVLTLEKVAEI----------ETTPPSPLSAGQDGISPLKILLVEDNQVNSLFA 1395
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAK 743
+ L G V+++++ + A T K
Sbjct: 1396 SHILQSWGHTVEIANNGRQAVETLK 1420
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 20/169 (11%)
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
VL+ E + P+ S Q + KIL+V+DN VN + A+ L+ +G TVE A +
Sbjct: 1353 VLTLEKVAEIETTPPSPLSAGQDGISPLKILLVEDNQVNSLFASHILQSWGHTVEIANNG 1412
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A++ L++ FD MD MP MDG +ATR IR E+ +
Sbjct: 1413 RQAVETLKT-REFDLVLMDALMPVMDGEQATRLIRSGEAGNPD----------------- 1454
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+PI+A TA + + L GM+ Y+SKP + L R L + ++K
Sbjct: 1455 --IPIVAQTAYALQGDRERFLSVGMNDYISKPLNLDELQRVLGRVMEAK 1501
>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
Length = 918
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 159/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 166/417 (39%), Gaps = 96/417 (23%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG----------FKGLKAVVVDEK 711
++G SF + + + F S DL P G + V+
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----ISLDLNPNVIVDRSTTLCLAGKRLAYVEPN 545
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILV------EKDCW 765
A T L+ + V S S +GL + DI+L+ +
Sbjct: 546 ATAAQCTLDILSETPLEVIYSPSF--------SGLPAE----HYDILLLGIPVTLREPLT 593
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
+ E A + D+ L+L ++ +K K GG A ++KPL ++
Sbjct: 594 MQHERLASAAAMTDF-----------LLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTR 641
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVN-RMVAAGALK 880
+ L + + S LL KI + VDDN N +++ A
Sbjct: 642 LLPALTEYCQLNH------------SADPLLLDESKIAMTVMAVDDNPANLKLIGALLED 689
Query: 881 KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
K V C + +A Q P FD MDIQMP+MDG A I Q+ +
Sbjct: 690 KVQHVVLCDSGHQAVDRARQMP--FDLILMDIQMPDMDGIRACELIHQLPHQQQT----- 742
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EE+ L+ L ++
Sbjct: 743 ---------------PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|163792880|ref|ZP_02186856.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
gi|159181526|gb|EDP66038.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
Length = 743
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 121/169 (71%), Gaps = 2/169 (1%)
Query: 354 AAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS 413
AA+ + K D ++++ K RAEAA AKS+FLA +SHEIRTPMNG++GM LLLD DL+
Sbjct: 215 AALAVFK--DAMAEVRDAKERAEAATRAKSEFLAMMSHEIRTPMNGVIGMTRLLLDGDLA 272
Query: 414 STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSR 473
+ R+ A G+AL+ ++N++LD +K+EA +LELE + F++R +++ ++L S ++
Sbjct: 273 ARDRETAGVVLESGEALMTILNDILDLSKLEAGRLELEVIDFDVRRLVEGTVTLMSGRAS 332
Query: 474 NKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
KG+ L V+D +P+++ GD GR RQ++ NLVGN+VKFT+ G + V+V
Sbjct: 333 EKGLALQARVADDMPQYLRGDAGRLRQVVLNLVGNAVKFTDAGSVTVRV 381
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 585 SNASIINMMASNGGSEDVTLMVCVE--DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
++A + + + GS+ T+ + +E DTGIG+ +A+ R+F F QAD+S +R YGGTG
Sbjct: 372 TDAGSVTVRVTRSGSDQTTVPLVLEVIDTGIGMDETARSRLFQEFAQADASIARRYGGTG 431
Query: 643 IGLSISKCLVELMRGQISFVSRPQVGSTF 671
+GLSISK +V+ M G I S GSTF
Sbjct: 432 LGLSISKRVVDRMGGAIEVDSASGRGSTF 460
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
LR +LV +DN VN+ VA G L+K G V A+ + + MD+ MPE
Sbjct: 483 LRPLHVLVAEDNIVNQRVARGLLEKRGHRVTVVPDGAQAVAAVAAGGVD-VVLMDLHMPE 541
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
+DG AT+ IR ++DG +PI+A TA + CL G
Sbjct: 542 LDGIGATKAIR---------------ALDGALA----SVPIVAATAGAMEHEVRACLNAG 582
Query: 977 MDGYVSKPFEEENLYRELAKFF 998
MD V+KP + L+R LA+
Sbjct: 583 MDATVAKPIDPRALFRTLARVV 604
>gi|430741730|ref|YP_007200859.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430013450|gb|AGA25164.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 919
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 112/163 (68%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+V D ++ K AEAA AKS+FLA VSHEIRTPMNGI+GM L+LDT LS+ Q++Y
Sbjct: 227 RVADRTAELVYAKEAAEAASRAKSEFLANVSHEIRTPMNGIIGMTELVLDTALSTEQQEY 286
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ +L+ +IN++LD +KIEA KLEL+ F+LR L D L + ++ KG+EL
Sbjct: 287 LEVVASSADSLLTVINDILDFSKIEAGKLELDRCPFDLRDCLGDALRPLAMRAHQKGLEL 346
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
A ++ VP+ ++GD GR RQI+ NLVGN++KFT+RG + V V
Sbjct: 347 AFDIAHNVPDALIGDGGRLRQIVVNLVGNAIKFTDRGEVVVTV 389
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 183/391 (46%), Gaps = 34/391 (8%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
++V L + V DTGIGIP + +F PF QAD S +R +GGTG+GLSIS LVE+M G+I
Sbjct: 397 KEVGLRIEVLDTGIGIPAHRHKAIFAPFEQADGSMTRKFGGTGLGLSISCRLVEMMGGEI 456
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S SR GSTFSFTA FG + + L L ++VD+ A +
Sbjct: 457 SLESRIGEGSTFSFTARFG-----LGVAPAPTTGAALGVDLHDLPVLIVDDN----ATNR 507
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L L I M + + A + L + P L D + D GF L
Sbjct: 508 RILRDLTIQWGMRPTTCEDGYGALHQLRHAAAVGDP-FRLAFFDAMMPAMD-GFT-LLAR 564
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
+ + + LP ++L + + D ++ + G A + KP + S + + +LS
Sbjct: 565 CRSDRDMAALPIIMLSSAGLQGD-AERCREFGVA--YLTKPAKQSDLLKAIVDILSDTPS 621
Query: 840 RQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL 899
+A + + R ++LV +DN VN+ +A L K G + AL++L
Sbjct: 622 SKAAAALDSSGIASSPAPRRLRVLVAEDNPVNQTLAIRLLAKLGHDSVVVGDGRQALNRL 681
Query: 900 QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ FD MD+QMP +DG EAT +R+ E++ GG H+P++A
Sbjct: 682 EKGG-FDLVLMDLQMPNLDGLEATSLLREHEAR------EGG------------HMPVIA 722
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENL 990
MTA + + CL G DGYVSKP +L
Sbjct: 723 MTAHAMRGDRERCLAAGCDGYVSKPMRSRDL 753
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC----FDACFMDIQMPEM 917
+L+VDDN NR + ++G AL +L+ F F D MP M
Sbjct: 497 VLIVDDNATNRRILRDLTIQWGMRPTTCEDGYGALHQLRHAAAVGDPFRLAFFDAMMPAM 556
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
DGF R R + RD LPI+ +++ + + C + G+
Sbjct: 557 DGFTLLARCR--------------------SDRDMAALPIIMLSSAGLQGDAERCREFGV 596
Query: 978 DGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
Y++KP ++ +L + + P S A
Sbjct: 597 -AYLTKPAKQSDLLKAIVDILSDTPSSKA 624
>gi|406895332|gb|EKD39927.1| hypothetical protein ACD_75C00243G0001 [uncultured bacterium]
Length = 713
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 197/420 (46%), Gaps = 75/420 (17%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E +TL+ + DTGIGIP +F F QAD ST+R YGGTG+GLSI + + LM G+I
Sbjct: 344 ETITLLAKIRDTGIGIPEDKFSTIFEAFKQADGSTTRKYGGTGLGLSICRRIAGLMGGRI 403
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAV 717
S G+TF FT+V K S + PP G+K +VVD+ +
Sbjct: 404 WVESTLGRGTTFFFTSVMKKST---------SCTAQRPPAENLGGVKILVVDDNRANNEI 454
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP------DIILVEKDCWISGED- 770
+ L + G+ V ++ D S+TA L +E + +P D+++ +SG D
Sbjct: 455 LRGILGKAGMEV---VTLLD-STTAVAELIRAEKENRPFQLAILDLLM----PLVSGYDL 506
Query: 771 -SGFNAQLLDWKPNGHVFKLPKLILLA-TNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
+G L P + LLA T+ ++ K K GF + KP R S++
Sbjct: 507 ATGIRTSSLAN---------PSIPLLAYTSSTERVAQKCKEAGFT-AFLTKPARRSLLLR 556
Query: 829 CLQQVLSTENKRQAGRGVP---------NGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
L ++L G G P S + L + +IL+ +DN VN+ +A L
Sbjct: 557 TLSRILG------PGNGAPEMPEEKKFVTQYSVREELKQSIRILLAEDNPVNQKLAMMML 610
Query: 880 KKFGATVECAASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
K G V + KAA++ +P FD MDIQMPEMDG+EATR+IR+ +
Sbjct: 611 SKAGYQVTVVPNGKAAVETFTGTPDGFDTILMDIQMPEMDGYEATRQIRRQGFR------ 664
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+PI+AMTA+ + + C GM+ Y+ KP + E +++ L K+
Sbjct: 665 ---------------EIPIIAMTANAMKGDKELCFAAGMNDYIMKPIKREIVFQILEKWL 709
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 113/169 (66%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E+ ++++ K AE A+VAKSQFLA++SHEIRTPMNG++G +LL T+L Q+D+
Sbjct: 174 EIENQTQELRKSKKAAEEANVAKSQFLASMSHEIRTPMNGVIGFTDMLLATELDEEQKDF 233
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A T + G+AL+ LIN++LD +K+EA ++ LE + F+ DV L + K IE+
Sbjct: 234 ALTIKRSGEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELIRPRVTGKPIEV 293
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
+ D +P + GDPGRFRQ++ NL+GN+ KFTE+G + + + + T
Sbjct: 294 LCRIEDNLPANIKGDPGRFRQVLVNLLGNAAKFTEQGELELSLEVMAET 342
>gi|333909018|ref|YP_004482604.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
gi|333479024|gb|AEF55685.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
Length = 927
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 197/400 (49%), Gaps = 54/400 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+TL+ + DTGIGIP +R+F PF Q D+ST+R +GGTG+GL ISK LVE M+G+I
Sbjct: 449 LTLLFQIIDTGIGIPEHKIDRLFKPFSQVDTSTTRQFGGTGLGLVISKKLVEQMQGKIEV 508
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE--KPVRAAVTQ 719
S P +GSTF F+ C + + Q S D + +++ E RA +T
Sbjct: 509 SSDPSIGSTFRFSL----CLQASGNLMNQKDSLD--------RHIILLEPNSTYRAHLTS 556
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
Y L+ +G+ S I+ S K + + I+L S E++ +L++
Sbjct: 557 Y-LHSIGVKTTRCSDIEQLISALKEKADTID-----GIVLSLGPEETSVEET---KELIN 607
Query: 780 WKPNGHVFKLPKLILLAT--NISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
+ N H F +P ++++ NI+++ KA A +++KP+ + LQQ+ +
Sbjct: 608 Y-ANQH-FSIPCIVMIQPPRNITQNPELKA----LASEILLKPVSHDRLYKALQQI--DQ 659
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
Q + +G KIL VDD +N + + L+ G V A S + AL
Sbjct: 660 RVIQVDEDSDSTPIESDQPRQGLKILAVDDAPINLQLLSHWLQPHGIEVALAYSGQQAL- 718
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L S FD FMDIQMPEMDG E T+++RQ++S N PI
Sbjct: 719 ALASEQSFDLIFMDIQMPEMDGMETTQQLRQLKSYQNT--------------------PI 758
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+A+TA + + + L GM+ Y++KP EE L+ + ++
Sbjct: 759 IALTAHALGSEQQQILASGMNAYLTKPIAEEVLFHTIDEW 798
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
A ++ KSQFLA +SHE+RTP+N ILG L + Y T + +L+A+
Sbjct: 289 EATESNRLKSQFLANISHEVRTPLNAILGYTKTLQKGIKDPQHKLYIDTIEQSTNSLLAI 348
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK--SRNKGIELAVFVSDKVPEFV 491
I ++LD +KIEA KL LE+ FNLRA++DDV S ++ K I+L ++PE++
Sbjct: 349 IGDILDFSKIEAGKLSLESNHFNLRALIDDVYQTLSINLLTKEKQIDLVTEFDAQLPEWI 408
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+GD R RQI+TNL+GN++KFT +G + KV
Sbjct: 409 IGDSTRVRQILTNLIGNAIKFTHQGSVKTKV 439
>gi|358638308|dbj|BAL25605.1| putative two-component system sensor protein [Azoarcus sp. KH32C]
Length = 1141
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 184/402 (45%), Gaps = 54/402 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGI Q+ +F F Q DSSTSR +GGTG+GL+IS+ LVELM G++S
Sbjct: 575 VRLRFAVRDTGIGIAKDKQQAIFNAFTQGDSSTSRSFGGTGLGLAISRRLVELMGGELSV 634
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P GS F+F E E + P + +V D+ V
Sbjct: 635 ASEPGKGSEFAF--------EIALE--LSDPVGNATPAMMFQRVLVADDNATARVVLSAT 684
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL--- 778
LG V+ S K A + N + D++L++ W E G A
Sbjct: 685 AASLGWSVEAVDSGKKAIAAVANA-----GRNPYDVLLLD---WRMPEVDGLAAATAIRR 736
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTEN 838
+ + +G +I++ T + +++ + D V+ KP+ S + L L ++
Sbjct: 737 NIREDGSA----PIIIMVTAMDREQLREQPGSEQVDAVLTKPVTCSGLYNAL---LDAKS 789
Query: 839 KRQAGRGVPNGSSFHQG--LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+R +P G L G++ILVVDDN +NR VA L GA VE A AL
Sbjct: 790 RRGE---LPIQEVPRTGGQALAGRRILVVDDNEMNRDVAQQILVGEGAEVELAPEGSTAL 846
Query: 897 DKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
LQS P FD MD+QMP MDG+E TR+IR S A HL
Sbjct: 847 TMLQSHPEGFDLVLMDVQMPVMDGYETTRQIRATPSLA--------------------HL 886
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA ++ GM+ +V+KPF+ + L + ++
Sbjct: 887 PVIALTAGAFKKQQLAAIESGMNDFVAKPFDVDELIATVQRY 928
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 94/148 (63%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEAA+ AK+ F+A +SHEIRTPMN IL + LL +L+ R Q I G++L+ +I
Sbjct: 416 AEAANRAKADFVANMSHEIRTPMNAILSLAYLLEKHELTPVARGMVQKIHIAGRSLLGII 475
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +KI+A++LE+E + F L +LD++ S+ S K +E+ V + + F+ GD
Sbjct: 476 NDILDFSKIDAQRLEIEHIPFRLADVLDNIASIMSSAVGEKPVEVVVGPAPEGANFLKGD 535
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKV 522
R Q++ NL GN++KFT G + V V
Sbjct: 536 ALRLGQVLINLAGNAIKFTNEGEVVVSV 563
>gi|421846716|ref|ZP_16279862.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|411772046|gb|EKS55693.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC
8090 = MTCC 1658]
Length = 918
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 159/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 169/417 (40%), Gaps = 96/417 (23%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG----------FKGLKAVVVDEK 711
++G SF + + + F S DL P G + V+
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----ISLDLNPNVLVDRSTTLCLAGKRLAYVEPN 545
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILV------EKDCW 765
A T L+ + V S S +GL +D + DI+L+ +
Sbjct: 546 ATAAQCTLDILSETPLEVIYSPSF--------SGL--PKDHY--DILLLGIPVTLREPLT 593
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
+ E A + D+ L+L ++ +K K GG A ++KPL ++
Sbjct: 594 MQHERLANAAAMTDF-----------LLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTR 641
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVN-RMVAAGALK 880
+ L + + S LL KI + VDDN N +++ A
Sbjct: 642 LLPALTEYCQVNH------------SADPLLLDDSKIAMTVMAVDDNPANLKLIGALLED 689
Query: 881 KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
K V C S A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 690 KVQHVVLCD-SGHQAVDRARQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----- 742
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EE+ L+ L ++
Sbjct: 743 ---------------PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|117926235|ref|YP_866852.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609991|gb|ABK45446.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 764
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 118/164 (71%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+VE +++ K AE A++AK++FLAT+SHEIRTP+NG+LGM LLL++DL+S QR +
Sbjct: 216 RVERRTRELRLAKEAAEQANLAKTEFLATMSHEIRTPLNGVLGMSDLLLESDLNSYQRHH 275
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+T G+ L+ +IN++LD ++I+A ++ LE F LRA L+DV +LF +++R KG+
Sbjct: 276 VETIHRSGRTLLRVINDILDLSRIQAGRMPLEVTAFKLRACLEDVQALFKDQARRKGLSF 335
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
++ +++P+ +LGD R QI+ NLVGN++KFTERG + V V
Sbjct: 336 SINCQEELPQRLLGDATRLNQILFNLVGNALKFTERGFVRVSVQ 379
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+++ A D+ L + VED+GIGI + R+F F Q DSS SR YGG+G+GL I++
Sbjct: 376 VSVQAEQVREADLLLRIQVEDSGIGISDEYKNRLFEIFSQQDSSISRRYGGSGLGLVITR 435
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI----KQSKSEDLPPGFKGLKA 705
L ++M G++ F SR GSTF TA FG+ + + + ++ +S L F+
Sbjct: 436 KLAQIMGGKLGFSSRSGAGSTFWVTARFGRVPDTLPDHPLLPREEQQSNLLNQRFRA-HI 494
Query: 706 VVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765
++ ++ PV V + +L RLG V + + + A + + E++F D++L+ DC
Sbjct: 495 LLAEDNPVNQDVARLNLERLGCRVTLVENGQQAVTVFQ------ENRF--DLVLM--DCE 544
Query: 766 ISGEDSGFNA 775
+ D G+ A
Sbjct: 545 MPIMD-GYTA 553
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
IL+ +DN VN+ VA L++ G V + + A+ Q + FD MD +MP MDG+
Sbjct: 494 ILLAEDNPVNQDVARLNLERLGCRVTLVENGQQAVTVFQE-NRFDLVLMDCEMPIMDGYT 552
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
ATR IR +E + + PI+A+TA + + ++ + GM+ ++
Sbjct: 553 ATRTIRDLERQQGRRAT-----------------PIIAVTAHALASHRNKAIATGMNDFL 595
Query: 982 SKPFEEENLYRELAKFF 998
SKPF L + LA +
Sbjct: 596 SKPFSTTKLIKLLATYL 612
>gi|423121876|ref|ZP_17109560.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5246]
gi|376393489|gb|EHT06146.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5246]
Length = 917
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 160/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNALDEVVTLLAHSAHDKGLELTLNIKNDVPDNI 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I V V +R + T + E ++
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTEHGNIDVLVE--QRALSNTSVQIEIQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV+ M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 44/219 (20%)
Query: 798 NISKDECDKAKAGGFADTVIM----------KPLRASMIAACLQQ---------VLSTEN 838
++S+ + + AKA AD +++ + L+ +AACL + L+
Sbjct: 590 DLSQQKDNLAKACAMADHLLLALPCHAQINAETLKQDGVAACLLKPLTATRLIPALTASC 649
Query: 839 KRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDK 898
+ + +P+ S + ++ VDDN N + L V S + A+++
Sbjct: 650 RTRTPIVLPHSDSSKLPM----TVMAVDDNPANLKLIGVLLDDLVQHVTLCDSGQRAVEQ 705
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
+ D MDIQMP+MDG A IR + + P++
Sbjct: 706 AKEMQ-LDLILMDIQMPDMDGIRACELIRHLPHQQQT--------------------PVI 744
Query: 959 AMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
A+TA ++ +K GM+ Y++KP EE+ L+ L ++
Sbjct: 745 AVTAHAFDGQKEKLMKAGMNDYLAKPIEEDKLHNLLLRY 783
>gi|395225868|ref|ZP_10404378.1| signal transduction histidine kinase [Thiovulum sp. ES]
gi|394445947|gb|EJF06805.1| signal transduction histidine kinase [Thiovulum sp. ES]
Length = 906
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 196/404 (48%), Gaps = 62/404 (15%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G ++ L+ +EDTGIGIP + +F F Q DSST+R YGG+G+GL+ISK ++ELM G
Sbjct: 395 GKKEENLLFEIEDTGIGIPEKKLKNLFTIFTQVDSSTTREYGGSGLGLAISKKMIELMGG 454
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I S +GS F F + +E +D+ + KS KG+KA++VD+ V
Sbjct: 455 KIGVQSVLHIGSKFYFEIPLYESEE--IKDLSEKKS------LKGVKALIVDDYETNRIV 506
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDC-WISGEDSGFNA 775
+ L G+ + + ++A S L + K +P DI+L +++ ++ G +
Sbjct: 507 FEGQLEEFGMEIVSIAESREAISI----LEEANKKGEPFDIVLTDQNMPFLDG--LSLSK 560
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
++ D K + + S DE +KA A G+ ++KP+ + L VL
Sbjct: 561 KIKDNK--NISSSIVVVTSSGHRGSFDEFEKAGASGY----LVKPIDRKTMNKFLATVLG 614
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGK--------------KILVVDDNGVNRMVAAGALKK 881
T R N + +L K K+LV +D N +V LK
Sbjct: 615 T-------RDFKNPPFITRYMLNQKMKQSKDTEAKKFIGKVLVAEDTKANVIVIKTLLKS 667
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
F V A + AL+ +S + F+ FMD++MP MDG EAT+ IR+ E +++
Sbjct: 668 FNLEVSIANDGQEALNLYKSEN-FNLVFMDLRMPNMDGLEATKLIRKYEEISHK------ 720
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPF 985
PI+A+TADVI T ++ + GM+GY++KPF
Sbjct: 721 ------------FTPIIALTADVIQQTKEDTEQAGMNGYIAKPF 752
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 112/170 (65%)
Query: 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
V+ + + ++E+ ++A+ AKS F+AT+SHEIRTPMN ILG+ +L +TDL Q ++
Sbjct: 233 VQKEKNTLEEIAKVEKSANEAKSIFIATMSHEIRTPMNAILGLTEILQNTDLDQEQYEFT 292
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
+T G +L+ +IN++LD +K+EA +LELE + +L +++DV+ L + KG+ L
Sbjct: 293 ETIYNSGNSLLDIINDILDYSKVEAGRLELEELNTDLENLVNDVVFLLEHNANEKGVRLI 352
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMV 530
V P+F+ DP R +Q++ NLVGN++KFT+ GH+ ++V E ++
Sbjct: 353 VDYCSTCPQFIKCDPSRLKQVLINLVGNAIKFTKSGHVLLRVGKKEENLL 402
>gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
Length = 1302
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 174/366 (47%), Gaps = 76/366 (20%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AE+ AKS FLAT+SHE+RTPMNG++ M +LLDTDL TQRDY T + G++L+ L+
Sbjct: 916 AESNTKAKSAFLATMSHELRTPMNGVISMANILLDTDLDETQRDYTSTIRDSGESLLTLL 975
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
N++LD +K EA KL +E +L+ +L+ +SL S ++ K I+L V+D P ++GD
Sbjct: 976 NDILDLSKAEAGKLSIEPFELDLKELLNQSVSLLSTTAQQKNIQLETNVTDDTPTLLIGD 1035
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTG 554
GR +Q+I NL GN++KFTE GH+ + V E T + + E + GV S T
Sbjct: 1036 AGRIKQVILNLTGNAIKFTEDGHVKINVSKLEDTNKHVNIRIEI-----EDTGVGISETA 1090
Query: 555 QFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614
E ADG +S +F GG TG+G
Sbjct: 1091 ASRLFRPFEQADGSHS-RRF----------------------GG------------TGLG 1115
Query: 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674
+ +S K +VELM G+I S GSTF FT
Sbjct: 1116 LAIS------------------------------KEIVELMDGEIGVDSVLGKGSTFWFT 1145
Query: 675 AVFGK----CKEYVFEDIKQSKSEDLPPGFKG--LKAVVVDEKPVRAAVTQYHLNRLGIM 728
K ++ + KS +KG LK ++ ++ P+ VT+ L ++G+
Sbjct: 1146 LKLEKVDIDAQQQTLISKSKEKSAKKSQRWKGPPLKILIAEDLPINQRVTRLQLKKIGLT 1205
Query: 729 VKMSSS 734
++ +
Sbjct: 1206 ADLAEN 1211
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 21/139 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KIL+ +D +N+ V LKK G T + A + LD ++S +D MD QMP MDG+
Sbjct: 1181 KILIAEDLPINQRVTRLQLKKIGLTADLAENGVEVLDAVRSKR-YDVILMDCQMPVMDGY 1239
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
+AT+++R + ++H I+A+TA+ + + C GM+ +
Sbjct: 1240 QATKKLR------------------AVPEHSDIH--IVALTANAMEGDKERCFAAGMNDF 1279
Query: 981 VSKPFEEENLYRELAKFFK 999
VSKP + L F K
Sbjct: 1280 VSKPTRPDTLLTAFENFAK 1298
>gi|344339667|ref|ZP_08770595.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
gi|343800403|gb|EGV18349.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
Length = 1717
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 204/429 (47%), Gaps = 52/429 (12%)
Query: 577 LIDAEGFQSNASIINMMASNGG-SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTS 635
L +A F ++ +A GG + V L V DTGIG+ +R+F F QADSST+
Sbjct: 1313 LANALKFTEQGTVEIRIARLGGDTAQVKLRFEVADTGIGMDTEQIDRLFQAFSQADSSTT 1372
Query: 636 RHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSED 695
R YGGTG+GL IS+ LVE M G+++ S P+ GS FSF + +E S+ D
Sbjct: 1373 RKYGGTGLGLVISRKLVERMGGRLTVASAPEAGSVFSFDLLLPVSRE-------DSEPRD 1425
Query: 696 LPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP 755
L G + +VVD+ V V + L V ++S + A + +E +P
Sbjct: 1426 L-RKIAGARVLVVDDHAVSRTVLREILQSWRCRVDEAAS----GAAAVQAVIEAERAGRP 1480
Query: 756 -DIILVEKDCWISGEDSGFNA--QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG-- 810
D IL+ D + G+ G A QL + G + ++ + ++D+ K ++G
Sbjct: 1481 FDFILM--DWKMPGDLDGLEATRQLFRLRKEGRLTGAETPAIIVSGYNRDDLPKERSGLS 1538
Query: 811 GFADTVIMKPLRASMIAACLQQVLSTE-NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNG 869
GF + KP+ AS A L +L K GR P + G IL+V+DN
Sbjct: 1539 GF----LGKPVTAS---ALLDTLLEAHGEKPHPGRTAPTARAPIPSFT-GAAILLVEDNA 1590
Query: 870 VNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929
+N+ VA L++ GA V A + A+ L + FD MD+QMP MDGFEATRRIR
Sbjct: 1591 LNQEVAKRMLQRTGAVVTLAENGIEAV-ALATTQDFDLVLMDLQMPMMDGFEATRRIRPQ 1649
Query: 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN 989
LPI+A++A V+ + + GM+G+++KP +
Sbjct: 1650 RPD----------------------LPIIALSAAVMEIDRNGAREAGMNGHLAKPIDTVE 1687
Query: 990 LYRELAKFF 998
LYR LA +
Sbjct: 1688 LYRTLALWL 1696
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ ED +E +AEAA +KS+FLA +SHEIRTPMN ++G+ +LL TDL+ QRDY
Sbjct: 1170 ETEDSLRLSRE---QAEAASRSKSEFLANMSHEIRTPMNAVIGLSQILLGTDLNDEQRDY 1226
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+ L+ +IN++LD +KIEA KL+LE+ F + +LD + +LF + KG+EL
Sbjct: 1227 LGKIHGSSRLLLGIINDILDYSKIEAGKLDLESRPFRMDELLDQMATLFGSAAGEKGLEL 1286
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VS VP +LGD R Q++TNL+ N++KFTE+G + +++
Sbjct: 1287 VFRVSPDVPRTLLGDALRLGQVLTNLLANALKFTEQGTVEIRI 1329
>gi|395229904|ref|ZP_10408214.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
A1]
gi|424730119|ref|ZP_18158717.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
gi|394716579|gb|EJF22317.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
A1]
gi|422895331|gb|EKU35120.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
Length = 918
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 159/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 166/416 (39%), Gaps = 94/416 (22%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG----------FKGLKAVVVDEK 711
++G SF + + + F S DL P G + V+
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----ISLDLNPNVLIDRSTTLCLAGKRLAYVEPN 545
Query: 712 PVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILV------EKDCW 765
A T L+ + V S S +GL +D + DI+L+ +
Sbjct: 546 ATAAQCTLDILSETPLEVIYSPSF--------SGL--PKDHY--DILLLGIPVTLREPLT 593
Query: 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM 825
+ E A + D+ L+L ++ +K K GG A ++KPL ++
Sbjct: 594 MQHERLANAAAMTDF-----------LLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTR 641
Query: 826 IAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKK 881
+ L + + S LL KI + VDDN N + L+
Sbjct: 642 LLPALTEYCQLNH------------SADPLLLDDSKIAMTVMAVDDNPANLKLIGALLED 689
Query: 882 FGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941
V S A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 690 KVQHVVLCDSGHQAVDRARQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT------ 742
Query: 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EE+ L+ L ++
Sbjct: 743 --------------PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|451946365|ref|YP_007466960.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905713|gb|AGF77307.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 932
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 110/158 (69%)
Query: 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430
L +A+AA+ AKSQFLA +SHEIRTPMNGILGM + LDTDL R +T G++L
Sbjct: 264 LAEQAQAANKAKSQFLANMSHEIRTPMNGILGMAEMALDTDLDKELRSSIETIMSSGESL 323
Query: 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
+ +IN++LD +KIEA KLELE + FNL +++DV + + ++ KG+EL V V D + +
Sbjct: 324 LTIINDILDFSKIEAGKLELETINFNLALLVEDVAQMLAYRAHAKGLELIVNVPDNISSY 383
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528
V GDP R RQ++ NL+GN++KFT+ G I +++ L T
Sbjct: 384 VSGDPSRLRQVLVNLLGNAIKFTDHGEILLQLTLLGET 421
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 194/405 (47%), Gaps = 40/405 (9%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+ +L V+DTGIGI E +F PF QAD ST+R YGGTG+GL+IS+ LVELM G+I+
Sbjct: 424 EASLRFSVQDTGIGISEDEYETLFHPFSQADDSTTRKYGGTGLGLAISRQLVELMGGEIN 483
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQY 720
SRP GS F K E + ++++ L L+A+++D+ + ++
Sbjct: 484 CNSRPGGGSEFWMEVTLDKASGT--EVVASTEADKL----SNLRAIIIDDNATNRRLLEH 537
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLT----SSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ G+ ++S GLT + D+ DI +++KD + G D A
Sbjct: 538 QMEIWGV-------DHASASGGIEGLTLLYQAVADRKPFDIAILDKD--MPGMDGLEVAA 588
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
L+ P+ + ++++L + + + A G + KP R + L +++
Sbjct: 589 LISKDPS---LQGTRMVMLTSVGIRGDARLAHQAGIK-IYLTKPTRQIDLYNSLVALMAR 644
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL 896
+ + + + S +LV +DN N+ VA G L+K G V + + AL
Sbjct: 645 DRFEDDNQLITHYSLQKNRATFDANVLVAEDNVTNQQVAMGVLRKLGCKVTLTKNGQEAL 704
Query: 897 DKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLP 956
+ + FD MD QMP MDG+EAT IR++E+ + KR P
Sbjct: 705 QFFEK-NSFDIVLMDCQMPRMDGYEATSAIRRLENMKDR------------GKRT----P 747
Query: 957 ILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
++A+TA+ + ++CL GMD Y+SKPF + + + L + K
Sbjct: 748 VVALTANALTGDREKCLAAGMDDYISKPFSLQQVEKVLKHWLPKK 792
>gi|59714208|ref|YP_206983.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
ES114]
gi|59482456|gb|AAW88095.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
ES114]
Length = 766
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 118/169 (69%)
Query: 359 VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRD 418
+K+E ++ +Q+ + AEAA+ +KS+FLA++SHEIRTPMN +LG+LA+L DT L Q++
Sbjct: 218 LKLEQNYQDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDTTLKPNQKE 277
Query: 419 YAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE 478
TA + L+++IN++LD +++EA LE +FN+ L+ VL F +++NK +E
Sbjct: 278 LVNTATDSSELLLSIINDILDFSRMEANTFYLENHIFNIHKSLNSVLKTFHPQAQNKQLE 337
Query: 479 LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
L++F++D VP +V GD R RQI+ NLVGNS+KFT+ G + + V+ E
Sbjct: 338 LSLFIADNVPTYVQGDAHRLRQILLNLVGNSLKFTDDGQVQILVNAEEH 386
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 20/137 (14%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVV+DN N++V L G +++ A + K A+ K + +D FMDI MPEMDG
Sbjct: 501 ILVVEDNHANQIVIKNTLNYAGYSIDIAQNGKEAITKAINTQ-YDLIFMDISMPEMDGMT 559
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
AT++IR + S ++ M PI+A+TA + + ++ GM Y+
Sbjct: 560 ATKKIRSL-SDTHQNM------------------PIIALTAHALSGDKERFIEAGMTDYL 600
Query: 982 SKPFEEENLYRELAKFF 998
SKPF +L LAK+
Sbjct: 601 SKPFNRSDLLECLAKYL 617
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 21/247 (8%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+ L V+D+GIGI E +F F AD+S SR + G+G+GL+I + LV +M G I+
Sbjct: 390 IQLHCSVQDSGIGIQQEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITV 449
Query: 662 VSRPQVGSTFSFTAVFGKC--KEYVF----EDIKQSKSEDLPPG--FKGLKAVVVDEKPV 713
S+ +GS FSF K KE + E I+Q K + F +VV++
Sbjct: 450 NSQYGLGSEFSFNIQLDKATTKEINYLLSKEKIEQQKDIEQQKNCVFSDANILVVEDNHA 509
Query: 714 RAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF 773
V + LN G + ++ + K+A + A N + D DI + E D + +
Sbjct: 510 NQIVIKNTLNYAGYSIDIAQNGKEAITKAIN---TQYDLIFMDISMPEMDGMTATKKI-- 564
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
L D N +P + L A +S D+ ++ G D + KP S + CL +
Sbjct: 565 -RSLSDTHQN-----MPIIALTAHALSGDK-ERFIEAGMTD-YLSKPFNRSDLLECLAKY 616
Query: 834 LSTENKR 840
L + K+
Sbjct: 617 LFKQGKQ 623
>gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
Length = 1364
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 197/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G + L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKLKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K P + L + ++ P R
Sbjct: 849 GGELEVESVPGRGSEFYFVVTLEKSAP--------------PQAQRELPTLPLESMP-RV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA + + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVANGQAALQAIEQASEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ ++ +
Sbjct: 952 VAIARQIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQGLDAVMTKPVTSAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
++Q+ E + A P +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 VEQLF--EGRAAARAATP---AFVARRLEGAHLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A++ L+ +P F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAINTLKRAPDLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L+ GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELIAAIRHFLQ 1152
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L D ++L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPVAALDMVAKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ +D F +Y+ + R P + G Y RV A F + P R
Sbjct: 87 ISRDRFTQYSRSRDYSREFPGVLGYGYIHRVAPADEAAF-----LQAARADGAPDIHRRP 141
Query: 170 YAP------VMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S LD+ S R L+A +G+ ++T P LLG
Sbjct: 142 LAPWDGERFMVLYFEPESSGNRPLGLDIASEPRRRAAALQASRSGEPIMTSPVSLLGYRI 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
G ++ VY+ +P T ++R+ AT G++ PF VE +V++ LG+
Sbjct: 202 PSESGFLVLLAVYREGMP-LQTPQQRMLATTGWVYAPFSVEQMVQSTLGE 250
>gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 1364
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 194/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K +Q LPP E R
Sbjct: 849 GGELEVESVPGRGSEFYFVITLEKSA----PPQEQRDLPSLPP-----------EAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+Q++ ++R R +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 FEQLM---DQRPGTRAA--TPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRTPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 110/182 (60%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ +++ K+QE ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLIE-----QKLQEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 46.6 bits (109), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQF-ERQHGMTITTMKSEPSPIRD 168
+ ++ F Y+ + R P + G Y RV A + F + ++ P D
Sbjct: 87 ISRERFTSYSRSRDYPREFPGVLGYGYIHRVAPADEDAFLQNARADGAPDIQRRPLAPWD 146
Query: 169 EYAPVMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG---SHHLG 222
++ Y EP S H +D+ S R L+A +G+ ++T P L G G
Sbjct: 147 GERYIVLYFEPESSGNHPLGIDIASDPHRRAAALQAARSGEPIMTSPISLFGYRVPRESG 206
Query: 223 VVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
L +Y+ +P T ++R+ AT+G++ PF + +V++ LG+
Sbjct: 207 FWLLLAIYREGMP-LQTPQQRMVATSGWVYAPFSLAQIVQSALGE 250
>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
Length = 1202
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 185/398 (46%), Gaps = 47/398 (11%)
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V+DTGIG+ + +F F QADSST+R YGGTG+GLSI+K LVELM G++S SR
Sbjct: 644 AVKDTGIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVESRLG 703
Query: 667 VGSTFSFTAVFG--KCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
G+ FSF+ V G + VF P + K ++D V L R
Sbjct: 704 EGARFSFSLVLGVSESNATVF----------YPAQLQSQKLALIDSSKESEQVVLSQLER 753
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784
+ V + S G K P+++L W E S +L +
Sbjct: 754 IQCKVDSYRDLDQLESALNQG------KTIPNVVLY---GW-RNEVSDNIETILSMRERA 803
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGF-ADTVIMKPLRASMIAACLQQVLSTENKRQAG 843
KLI+L ++ +D + + +V+ KP AS + L E+ R G
Sbjct: 804 PQVLTAKLIILCSDSRQDIIEALEETDIQVASVLEKPFTASTLHDALIAAALNESPR-VG 862
Query: 844 RGVPNGSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ + L L+G K+L+V+DN +N+ VA L+ G +V+ + + A+ LQS
Sbjct: 863 HYRSHSEELKRALASLQGAKVLLVEDNTINQEVARELLQSKGLSVDVVENGQEAVTSLQS 922
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+D MD QMP MDG+EATR IR+ + + LP++AMT
Sbjct: 923 -EIYDGVLMDCQMPIMDGYEATRNIRK--------------------ELGLVELPVIAMT 961
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
A V+ ++ L CGM+ + KP E +++ +AK+ +
Sbjct: 962 ASVMIDDKEKALACGMNDVIGKPIILEEMFQVMAKWIQ 999
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 114/170 (67%), Gaps = 5/170 (2%)
Query: 356 IHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
+HIV E ++E ++ + A AKS FLA +SHEIRTPMN I+GM L L+T L +
Sbjct: 468 LHIVTEE-----LEESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKLDNK 522
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
QR Y +AL+ +IN++LD +KIEA K+E+E++ F+L ++L++V+SL + ++ K
Sbjct: 523 QRHYISKVNSSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQK 582
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525
+ L + V+ VP+ ++GDP R +Q++TNL N+VKFTE G + VKV A
Sbjct: 583 KLSLIIDVASDVPDQLIGDPLRIKQVLTNLTSNAVKFTETGEVRVKVSTA 632
>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 514
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 114/155 (73%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE K+ FLAT+SHEIRTPMNG+LGML LL + L+ QRD+ +TAQ +AL+
Sbjct: 139 KDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLLTGSPLTPDQRDHLETAQSSARALL 198
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN++LD +K+EA +++LEA F+L +L+++++L +R+KG+ L++ ++D VP +
Sbjct: 199 AIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDKGLTLSLRIADTVPRYQ 258
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
GDP R RQ++TNL+GN+VKFTE+G + V V E
Sbjct: 259 AGDPTRLRQVLTNLMGNAVKFTEKGDVAVSVEPEE 293
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 17/236 (7%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S+ L V DTGIGI +A +F F+QADSS +R +GGTG+GLSI K LVE+M G+
Sbjct: 294 SDSSRLRFEVADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGE 353
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I F S P G+TF FT D +ED P + ++ ++ PV +T
Sbjct: 354 IGFDSIPGEGTTFHFTLPLSAA----LPDQDSGAAEDAGPDLPPMAVLLAEDNPVNQKLT 409
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L+R G V ++ + +A + + D F D++L+ D + G D G A
Sbjct: 410 TTLLDRWGQRVTLARNGAEAIAAV------ARDHF--DLVLM--DVHMPGID-GLEATRR 458
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834
+G V K+P + + A + D AG D + KP+ + + A L + +
Sbjct: 459 IRAMSGPVAKIPIIAMTADVMDGDAALCLDAG--MDDYVAKPVEPTRLLAALHRAI 512
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+ +DN VN+ + L ++G V A + A+ + H FD MD+ MP +DG E
Sbjct: 396 VLLAEDNPVNQKLTTTLLDRWGQRVTLARNGAEAIAAVARDH-FDLVLMDVHMPGIDGLE 454
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
ATRRIR M + +PI+AMTADV+ CL GMD YV
Sbjct: 455 ATRRIRAMSGPVAK-------------------IPIIAMTADVMDGDAALCLDAGMDDYV 495
Query: 982 SKPFEEENLYRELAKFFK 999
+KP E L L + +
Sbjct: 496 AKPVEPTRLLAALHRAIR 513
>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
Length = 993
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 112/167 (67%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
K+E + + A+AA+ AKS+FLA +SHEIRTPMNG++GM LLL + L Q+ +
Sbjct: 315 KLEASIARANTMASEADAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRSTLDKEQKKF 374
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+T GK L+ L+N++LD +KIEA KLE+E + FNL +LD+++++FS K+ KG+
Sbjct: 375 AETINASGKNLLHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNF 434
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+ +P + GDPGR +QI+ NL+ N++KFT+ G I V V L E
Sbjct: 435 TFLPDEDIPLLLRGDPGRIKQILVNLISNAIKFTDEGEILVNVELEE 481
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 197/431 (45%), Gaps = 69/431 (16%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++N+ ++ + V DTGIGI S + +F PF+QAD ST R YGGTG+GLSIS
Sbjct: 474 LVNVELEEDFGDNARIRFTVSDTGIGIDESRMDAIFEPFVQADGSTIRKYGGTGLGLSIS 533
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK--EYVFEDIKQSKSEDLPPGFKGLKAV 706
L M G+I S P GS F F+ F K + + ++ DI +P G +
Sbjct: 534 NKLARNMGGRIQVRSTPSQGSMFYFSIDFIKQQHPDQIYADIS------IP--LTGFNVL 585
Query: 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLT----SSEDKFQPDIILVEK 762
+++ P +A+ + I + +S + +S ++G+ ++E PDI+L+
Sbjct: 586 LIE--PCQAS-----RKLIKIFFSLWNSCFEEASDWESGVKKLQKAAESGVLPDIVLI-- 636
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFK-------LPKLILLATNISKDECD-KAKAGGFAD 814
L + VF+ L +I++ + D + G D
Sbjct: 637 --------------ALPEERRDEVFEKFRTGDLLENVIVIGLTSAGRGADFQPDPLGKPD 682
Query: 815 TVIMKPLRASMIAACLQQVL----STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGV 870
+ KP+R + AC+ +L ST + + +P S + R +IL+V+D+ V
Sbjct: 683 ACLEKPIRGKELYACVADLLKRRGSTPELLEKNK-IP-VHSVTEKERRHFRILLVEDSEV 740
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N++V L+K G + + AL L H +D MD QMPEMDG+EATR IR
Sbjct: 741 NQLVLLSMLQKEGYEADVVQNGTEALVALAKVH-YDLVLMDCQMPEMDGYEATRCIR--- 796
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+ +MN +PI+A+TA+ + + CL+ GMD Y++KP +
Sbjct: 797 -RGQGNVMNP-------------EVPIVAITANAMTGDRERCLQAGMDDYMAKPVRMSDF 842
Query: 991 YRELAKFFKSK 1001
L K+ K
Sbjct: 843 TAMLEKYSGEK 853
>gi|443475295|ref|ZP_21065249.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019885|gb|ELS33914.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 850
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 193/409 (47%), Gaps = 51/409 (12%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V+L V DTGIGI L AQ ++F PF+Q D+ST+R YGGTG+GL+I K LV LM G I
Sbjct: 338 VSLSFSVIDTGIGISLEAQSKLFEPFIQVDASTTRQYGGTGLGLAICKQLVRLMGGSIYV 397
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP---PGFKGLKAVVVDEKPVRAAVT 718
S GSTF FT F KQS+ P + L+ +VVD+ +
Sbjct: 398 ESEENKGSTFWFTVPFQ----------KQSEEGSYPLAVSALQDLRVLVVDDSVTNCNIL 447
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP------DIILVEKDCWISGEDSG 772
+ L KM I S+ A + L + QP D+ + + D GE G
Sbjct: 448 YHQLKSW----KMQVDILIQSTEAIDALHRAIAIGQPYQFALLDMQMPDLD----GEQLG 499
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+ + + + LI+L + + GFAD + KP+R + L
Sbjct: 500 TQIK------SSPILRDTHLIMLTSLDQNGAASRMLEIGFAD-YLRKPVRKLRLLNSLIN 552
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+S ++ + + P + L KIL+V+D+ +N+ V L G V+ A+
Sbjct: 553 TISGKSAKLIDQP-PEFMAEEVKLPSQLKILLVEDSPINQKVTINQLHNLGYRVDVVANG 611
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ ALD L + MD QMP MDG+ +RRIR+ E+ N G+ V
Sbjct: 612 QEALDILDKI-SYSIILMDCQMPVMDGYVTSRRIREREASQNL----AGAGV-------- 658
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
I+A+TA+ + A D C+ GMD ++SKP +++L ++LA +++ +
Sbjct: 659 ---AIIALTANAMKADRDRCIAAGMDDFLSKPVRKQDLAKKLAYWYQMR 704
Score = 153 bits (386), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 113/155 (72%)
Query: 375 AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALI 434
AEA++ AKS FLAT+SHEIRTPMN ++GM LLL+TDL Q+D+A T G+ L+ LI
Sbjct: 181 AEASNQAKSSFLATMSHEIRTPMNAVIGMTGLLLETDLDPRQQDFANTIHNSGEHLLNLI 240
Query: 435 NEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD 494
NE+LD +K+EAR+++LE + F L + +++V + + + +KG++LA+F+ VP+++ GD
Sbjct: 241 NEILDFSKLEAREMQLEELDFELESSIEEVADILAGSAHSKGLDLALFIHPDVPKYLKGD 300
Query: 495 PGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529
GR RQ++ NL N++KFT +G + ++V +A+ +
Sbjct: 301 IGRLRQVLLNLTNNAIKFTRQGEVTIEVAIAKEDL 335
>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
Length = 1407
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 114/171 (66%), Gaps = 4/171 (2%)
Query: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA 429
E + +E+A+ AKS+FLA +SHEIRTPMNG++GM LLLDT LS QR YAQ
Sbjct: 876 EARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDTSLSDEQRGYAQAVMESADF 935
Query: 430 LIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPE 489
L+ LIN++LD +KIEA K ELE + F+LR +LDDV S+ + ++R+K +E S +V
Sbjct: 936 LLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVRARDKELEFICAASPEVTP 995
Query: 490 FVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKD 536
F+ GDPGR Q++ NL GN++KFT +G + V V L A+ +++ +D
Sbjct: 996 FLRGDPGRLYQVLNNLAGNAIKFTHQGEVAVSVALVSGSAQEDLLRFSVRD 1046
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 190/461 (41%), Gaps = 105/461 (22%)
Query: 573 KFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632
KF H Q ++ + S ED+ L V DTGIGIP +F F Q D+
Sbjct: 1017 KFTH-------QGEVAVSVALVSGSAQEDL-LRFSVRDTGIGIPEQKIAILFSSFTQVDA 1068
Query: 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSK 692
ST+R +GGTG+GL+IS+ LVELM G+I SR GS F FT F K
Sbjct: 1069 STTRKFGGTGLGLAISRQLVELMGGEIGVSSRENEGSEFWFTIPFKK------------- 1115
Query: 693 SEDLPPG---------FKGLKAVVVDEKPVRAAVTQYHLNRLGIMV-------KMSSSIK 736
LP G G + ++VD+ V + G +V ++ + +K
Sbjct: 1116 --QLPKGNGGRYSKDAIAGTRILIVDDNATNRTVLRRQFLSWGAVVTELSGGAQVVAELK 1173
Query: 737 DASSTAK--------------NGLT-----SSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
A + + +G T ++K P ++++ G
Sbjct: 1174 RAHESGEPYRLALIDMQMPDMDGATLCRSIKDDEKLAPTVLVMMSSL-------GSKCSE 1226
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837
D K G L K IL D D A FADT +P +SM A + ++
Sbjct: 1227 EDLKRMGCSACLSKPIL-----QSDLFDTFAAIIFADT---EPGGSSMTAG--ESPKESQ 1276
Query: 838 NKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+++ GRG G ++L+ +D +N+ V G L K G ++ + A+
Sbjct: 1277 PQKKDGRG------------EGVRLLLAEDTSINQKVVIGILGKLGYHIDVVVNGAEAVR 1324
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
L++ +D MD+QMPEMDG EATR IR +S +P+
Sbjct: 1325 ALETT-PYDLVIMDLQMPEMDGLEATRIIRSPDSAVLNH-----------------RIPV 1366
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+A+TA + + C+ GM YVSKP + L + K+
Sbjct: 1367 IALTAHTMEGDRELCMHAGMTDYVSKPIDSAILVETIRKWL 1407
>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
Length = 2059
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 115/173 (66%), Gaps = 7/173 (4%)
Query: 359 VKVEDDFHKMQELKVR-------AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD 411
V + + H ++E ++ AEAA AKS F+A +SHEIRTPMNGI+GM L LDT+
Sbjct: 1326 VTINEMIHNLKETTIKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE 1385
Query: 412 LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEK 471
L++ QR+Y Q +L+ +IN++LD +KIEA +LEL+ F+LRA L D L + +
Sbjct: 1386 LTAEQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWR 1445
Query: 472 SRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+ KG+EL ++ +P+ ++GDPGR RQI+TNLVGN++KFT G + + V +
Sbjct: 1446 AHQKGLELVCDIASDIPDSLVGDPGRLRQIVTNLVGNAIKFTSEGEVDLVVKI 1498
Score = 150 bits (378), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 185/404 (45%), Gaps = 57/404 (14%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQIS 660
+V L V D+GIGIP +F F QAD S +R YGGTG+GL+IS LVELM+G++
Sbjct: 1505 EVLLRFSVIDSGIGIPKEKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLR 1564
Query: 661 FVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAAVT 718
VS+P GSTF FTA F + D+ ++ P G K + +VVD+ V
Sbjct: 1565 VVSKPGKGSTFEFTAQFPTKPDL---DLGET-----PIGVKLKDVHTLVVDDNKNTVKVL 1616
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQL 777
L GI +S D A +T + +P + + + D+ + +
Sbjct: 1617 CQMLFEFGI----TSDSTDNGQDAYKMMTKAAQSNRPYEFLFI---------DAQIDTNI 1663
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKA---GGFADTVIMKPLRASMIAACLQQVL 834
+D +I+L + C + + GG+ + KP+ S + LQ+
Sbjct: 1664 VDLISEDPKLSKTNVIMLICGGGQRGCPENASSLIGGY----LSKPVSPSEMLEILQKQG 1719
Query: 835 STENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA 894
+ + + P F IL+ +DN VN+ +A L+KFG V A +
Sbjct: 1720 ISRQSKVCKKIQPISEIFGD-------ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQ 1772
Query: 895 ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELH 954
A+ + H FD MD+QMP M GFEAT +IR++ES + +H
Sbjct: 1773 AVAACEIKH-FDLILMDVQMPHMGGFEATAQIRKLES------------------NEGIH 1813
Query: 955 LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
PI+AMTA + +C++ GMD Y+SKP + L + K+
Sbjct: 1814 TPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQLKSMIEKYL 1857
>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1255
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 113/177 (63%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+YG + + ++Q + AEAA AKSQF+A++SHEIRTPMNGILGM LLL T
Sbjct: 566 VYGLLDDVTDERERALQLQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGMTELLLGT 625
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
L QR +AQ G+ L+ +IN+VLD +KIEA +LEL FNLR +++D L L +
Sbjct: 626 RLDDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAP 685
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
++ KG+EL+ + VP VL DP R RQ++TNLV N+VKFTE G + V + R
Sbjct: 686 RAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVKFTEHGEVTVDLRFLPR 742
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 177/385 (45%), Gaps = 46/385 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIG+ R+F F QA +R YGGTG+GL+IS+ LVELM GQI VS+P V
Sbjct: 755 VRDTGIGMAAELLPRLFTAFTQAHGGMARRYGGTGLGLAISRQLVELMGGQIDVVSQPGV 814
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F FT F + D + + LP + +VV++ V + L+ G+
Sbjct: 815 GSEFRFTMTF---EPGSGRDSEAGELTALPQA----RVLVVEDHATNRTVLDHLLSAWGL 867
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLDWKPNGHV 786
V ++ + A +N QPD + D + D GF L + G +
Sbjct: 868 SVTLAVDGQAALELLRN-----RPADQPDFDIALVDWRMPRLDGIGFAKAL---RAEG-L 918
Query: 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGV 846
+L++L++ + D+ A+ GF I KP+R A Q +L A RGV
Sbjct: 919 APGTQLVMLSSASAPDDARLAQDAGFV-RFIHKPVRK---AELRQAILGV----TASRGV 970
Query: 847 -PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
P + ++LVV+DN VN+ V L + G V A +A L ++
Sbjct: 971 EPVDAQVR------AQVLVVEDNPVNQEVMGQMLHRLGCRVRVAGTALDGL-RVLCEQPV 1023
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D MDIQMP MDG EA IR+ ES + R +LP++A+TA+ +
Sbjct: 1024 DLVLMDIQMPGMDGIEALHWIRRGESSRFK-------------LRTPANLPVVAVTANAL 1070
Query: 966 HATFDECLKCGMDGYVSKPFEEENL 990
+ L G D Y+SKP+ + L
Sbjct: 1071 DGDEERFLGFGFDAYLSKPYRQSQL 1095
>gi|381402688|ref|ZP_09927372.1| hybrid sensory histidine kinase BarA [Pantoea sp. Sc1]
gi|380735887|gb|EIB96950.1| hybrid sensory histidine kinase BarA [Pantoea sp. Sc1]
Length = 909
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG+LG +L T L +TQRDY QT + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN+VLD +K+EA KL LEA+ F LRA LD+ L L + + +KG+EL V VP+ V
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537
+GD R +QI+ NL+GN++KFTE+GHI ++V +R M +T + E
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEQGHIGLRV--TQRVMTQTRVELE 446
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 173/404 (42%), Gaps = 73/404 (18%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L + VED+GIGI Q ++F F QAD+S SR +GGTG+GL I++ LV M G I+F
Sbjct: 443 VELEIQVEDSGIGISEQQQTQLFQAFRQADASISRRHGGTGLGLVITQKLVREMGGDITF 502
Query: 662 VSRPQVGSTFSFTAVF-----GKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
S+P GSTF V E + QS+ + V D RAA
Sbjct: 503 SSQPDQGSTFVIRVQLDLNPNAPGMPRVLEALSQSR----------IAYVEADATVARAA 552
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED---SGF 773
+ L I D S T + GL +S ++L+ IS + G
Sbjct: 553 LEMLSATPLQI---------DYSETLE-GLPASHYP----LLLMAMPVSISQPELLNEGR 598
Query: 774 NAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
LLD N + LP ++L D+ K G D I KP+ + + L +
Sbjct: 599 INALLDRADNV-LMALPSPMMLL-------ADELKVRGI-DGCIAKPISLTRLLPMLLDL 649
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ RQ +P ++ VDDN N + L++ + +SA+
Sbjct: 650 ----HTRQISE-LPFSPRL------PLTVMAVDDNPANLKLIGALLEEQVQNILLCSSAE 698
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
A+ + + D MDIQMP++DG A+ IR G + T
Sbjct: 699 HAIREARQ-QSLDVILMDIQMPDIDGIRASEIIR-------------GLPLHATT----- 739
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
PI+A+TA I ++ +K GM+ Y++KP +E L + LA++
Sbjct: 740 --PIVAVTAHAIDGEREQLIKAGMNDYLAKPIDESKLRQLLARY 781
>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|383322325|ref|YP_005383178.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325494|ref|YP_005386347.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491378|ref|YP_005409054.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436645|ref|YP_005651369.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803]
gi|451814742|ref|YP_007451194.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|339273677|dbj|BAK50164.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803]
gi|359271644|dbj|BAL29163.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274814|dbj|BAL32332.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277984|dbj|BAL35501.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958508|dbj|BAM51748.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|451780711|gb|AGF51680.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 1261
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 130/425 (30%), Positives = 205/425 (48%), Gaps = 70/425 (16%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+DV L + V+DTGIGI +F F QADSST+R++GGTG+GL+I K + ELM G++
Sbjct: 675 QDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEV 734
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S GSTF K + S+DL +G + +VVD+ V +
Sbjct: 735 GVESEYGQGSTFWAKVCLQKSNVIPH---RLVLSKDL----EGKRVLVVDDNDHARLVMK 787
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L ++ +V+ S A N L ++ + P I+ +D
Sbjct: 788 DLLEQMKFVVETVES----GPEALNFLAEADRENHPHSIV-----------------FID 826
Query: 780 WK-PNGHVFKLPKL-----------ILLATNISKDEC-DKAKAGGFADTVIMKPLRASMI 826
W+ PN ++ + I + T ++E KAK+ G D V++KP+ S++
Sbjct: 827 WQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGI-DDVLVKPISPSVL 885
Query: 827 AACLQQV------LSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALK 880
L +V L+ E ++ +G G + + +RG +IL+V+DN +N+ VAA L+
Sbjct: 886 FDSLARVLGDPTALAQEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLR 945
Query: 881 KFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940
G V+ AA+ AL++L + + + MD+QMPEMDG EAT IRQ A
Sbjct: 946 DVGFNVDVAANGLIALERLNN-NAYALVLMDMQMPEMDGIEATIAIRQNPRYA------- 997
Query: 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK- 999
LPI+AMTA+V+ + CL+ GM+ ++ KP E E L+ +L +
Sbjct: 998 -------------QLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWIPV 1044
Query: 1000 SKPLS 1004
PL+
Sbjct: 1045 DSPLA 1049
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 105/160 (65%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
+M+ K AE A K+ FLA +SHEIRTPMN ++GM L L TDL+ QR+Y +
Sbjct: 512 EMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFS 571
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G+ L+ +IN++LD +KIEA KL +E++ F+L +LD+V +L SEK+ NKG+EL +
Sbjct: 572 GQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRN 631
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+P +GDP R QI+ N N+VKFTE+G I + V L E
Sbjct: 632 LPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQE 671
>gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 1364
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 194/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K +Q LPP E R
Sbjct: 849 GGELEVESVPGRGSEFYFVITLEKSA----PPQEQRDLPSLPP-----------EAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+Q++ ++R R +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 FEQLM---DQRPGTRAA--TPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRTPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 46.2 bits (108), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQF-ERQHGMTITTMKSEPSPIRD 168
+ ++ F Y+ + R P + G Y RV A + F + ++ P D
Sbjct: 87 ISRERFTSYSRSRDYPREFPGVLGYGYIHRVAPADEDAFLQNARANGAPDIQRRPLAPWD 146
Query: 169 EYAPVMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG---SHHLG 222
++ Y EP S H +D+ S R L+A +G+ ++T P L G G
Sbjct: 147 GERYIVLYFEPESSGNHPLGIDIASDPRRRAAALQAARSGEPIMTSPISLFGYRVPSESG 206
Query: 223 VVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
L +Y+ +P T ++R+ AT+G++ PF + +V++ LG+
Sbjct: 207 FWLLLAIYREGMP-LQTPQQRMVATSGWVYAPFSLAQIVQSALGE 250
>gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
KACC 10331]
Length = 1402
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 194/411 (47%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 827 SGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 886
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K +Q LPP E R
Sbjct: 887 GGELEVESVPGRGSEFYFVITLEKSA----PPQEQRDLPSLPP-----------EAMPRV 931
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 932 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 989
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 990 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1044
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+Q++ ++R R +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1045 FEQLM---DQRPGTRAA--TPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVA 1099
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P+ F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1100 HDGEQAVSTLKRTPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1145
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L GM+G+++KPF E L + F +
Sbjct: 1146 ------LPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQ 1190
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 648 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 700
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 701 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 760
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 761 FDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 820
Query: 521 KV 522
V
Sbjct: 821 SV 822
Score = 46.6 bits (109), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQF-ERQHGMTITTMKSEPSPIRD 168
+ ++ F Y+ + R P + G Y RV A + F + ++ P D
Sbjct: 125 ISRERFTSYSRSRDYPREFPGVLGYGYIHRVAPADEDAFLQNARADGAPDIQRRPLAPWD 184
Query: 169 EYAPVMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG---SHHLG 222
++ Y EP S H +D+ S R L+A +G+ ++T P L G G
Sbjct: 185 GERYIVLYFEPESSGNHPLGIDIASDPHRRAAALQAARSGEPIMTSPISLFGYRVPRESG 244
Query: 223 VVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
L +Y+ +P T ++R+ AT+G++ PF + +V++ LG+
Sbjct: 245 FWLLLAIYREGMP-LQTPQQRMVATSGWVYAPFSLAQIVQSALGE 288
>gi|417806315|ref|ZP_12453259.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
LB226692]
gi|417834069|ref|ZP_12480515.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
01-09591]
gi|340733065|gb|EGR62197.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
01-09591]
gi|340739048|gb|EGR73285.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
LB226692]
Length = 811
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 176 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 235
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 236 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 295
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 296 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 343
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 344 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 375
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 376 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 405
Query: 672 SF 673
F
Sbjct: 406 WF 407
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 563 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 620
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 621 RACELIHQLPHQQ--------------------QTPVIAVTAHAMAGQKEKLLGAGMSDY 660
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 661 LAKPIEEERLHNLLLRY---KPGSG 682
>gi|419330323|ref|ZP_13871923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12C]
gi|378168798|gb|EHX29701.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12C]
Length = 720
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 85 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 144
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 145 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 204
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 205 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 252
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 253 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 284
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 285 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 314
Query: 672 SF 673
F
Sbjct: 315 WF 316
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 472 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 529
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 530 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 569
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 570 LAKPIEEERLHNLLLRY---KPGSG 591
>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
Length = 1284
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 194/415 (46%), Gaps = 64/415 (15%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V DTGIGI A R+F F QADSST+R YGG+G+GL+IS LV L G I
Sbjct: 684 VRLHFEVRDTGIGIDADAIPRLFRSFEQADSSTTRRYGGSGLGLAISHRLVTLTGGTIGV 743
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF F + + +++ + + P G + +VVD+ Y
Sbjct: 744 QSELGKGSTFWF-------ELSLLPGTRRAPALLVQPELAGRRLLVVDDH-------GYA 789
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
+G M++ D + + L++ + D I ++A +DW+
Sbjct: 790 RQVIGSMLRGFGFRADEVESGEKALSAIQ---HADAIA-----------DPYHAVFIDWR 835
Query: 782 PNG-----HVFKL---------PKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
G V KL P+ +++ N ++ + + GF +T + KP+ S++
Sbjct: 836 MPGLDGIQTVRKLAAMSLQSQRPRPLMITANGREEVVREGERNGF-ETTLHKPVSPSVLF 894
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
+VL++E R A +G P + L ++L+V+DN +NR VA L++ G T +
Sbjct: 895 DATMRVLASEPGRMADKGAPRSVTGPSWTLPHARVLLVEDNEINREVATHLLQQAGITPD 954
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A + AL+ L + +D MD+QMP MDGFEATR IR AN ++ +
Sbjct: 955 TAENGAIALELL-AVQDYDLVLMDMQMPVMDGFEATRHIR-----ANPRLAS-------- 1000
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+P++AMTA+ + + CL GMD +++KP + L ++ P
Sbjct: 1001 -------MPVVAMTANALPEDRNRCLAAGMDDHIAKPISPATFFTTLHRWLTGAP 1048
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 103/156 (66%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ + K AE+A AK+ FLA +SHEIRTPMN ++GM L L T L QRDY + Q
Sbjct: 517 ELAKAKHEAESAAQAKASFLANMSHEIRTPMNAVIGMAHLALSTQLDPQQRDYVEKIQRS 576
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G+ L+ ++N++LD +KIEA KLE+E + F+L +L V L SE++ K +EL V V
Sbjct: 577 GQHLLGILNDILDLSKIEAGKLEIEQIDFSLERLLRTVGDLVSERAAAKQLELVVDVQPD 636
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
VP+ + GDP R RQ++ N N+VKFTERG I ++V
Sbjct: 637 VPDSLRGDPLRIRQVLINFTTNAVKFTERGEIVIRV 672
>gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B]
gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B]
Length = 753
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 110/160 (68%), Gaps = 3/160 (1%)
Query: 366 HKMQELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQT 422
H +EL+ RAEAA+ AKS FLA +SHEIRTPMNG++GM LL DT L+ QR YA T
Sbjct: 203 HYEEELRTARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDTSLTEEQRLYANT 262
Query: 423 AQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVF 482
+ G+AL+ +IN+VLD +KIEA KL L F+L A + +V+ L +R+KG+ L V
Sbjct: 263 IKNSGEALLVIINDVLDYSKIEAEKLVLHPEPFDLEACMHEVVMLLQANARDKGLTLLVD 322
Query: 483 VSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P +GDPGR RQI+TNL+GN+VKFT +GH+ +V
Sbjct: 323 YDLFMPTSFIGDPGRIRQILTNLIGNAVKFTNQGHVTARV 362
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 184/418 (44%), Gaps = 74/418 (17%)
Query: 600 EDVTLM--VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
ED T+M + +ED+GIGIP + +F F Q + T+R + GTG+GL+I++ L+++M G
Sbjct: 369 EDNTVMLHISIEDSGIGIPEEKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKMMDG 428
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I V S F + FG V D Q + +LP + ++VD+ + +
Sbjct: 429 EI------WVESEFGKGSCFGFRLPLVVADGSQVNAPELPDDLNCV--MIVDDMEINREI 480
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
L RLG+ V +S A ++ D+ LV D + G D A+
Sbjct: 481 LNRQLQRLGLKVIPVTSGAGAL-----------EQMSKDVDLVITDRNLPGMDGLKLARS 529
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPL-RASMIAACLQQVLST 836
L H + ++LL+++ D D A FA V+ KP+ R ++ A
Sbjct: 530 LR-----HAWSDVPVLLLSSD-PADASDPAIRDIFA-GVLQKPIPRGALFTAL------- 575
Query: 837 ENKRQAGRGVPNGSSFH------------------QGLLRGKKILVVDDNGVNRMVAAGA 878
+K A G P +S LR ++L +DN N++V
Sbjct: 576 -SKLSAPSGQPPSASLAVEAAPSPAMTQSAATADLASDLRRMRVLAAEDNRTNQLVFRKM 634
Query: 879 LKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
+K + A + + A++ QS D FMDI MP+MDG +AT+ IR++E
Sbjct: 635 VKDMNIDLRFAGNGQEAVELYQS-FVPDMIFMDISMPKMDGKQATQAIRELE-------- 685
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
K + + I+A+TA + + L G+D Y++KP + ++ + K
Sbjct: 686 ----------KENGRKVQIVALTAHAMDGDSEGILAAGLDDYLTKPLRKSLIHERIMK 733
>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 735
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 149 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 208
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VPE V
Sbjct: 209 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 268
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 269 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 316
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 317 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 348
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 349 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 378
Query: 672 SF 673
F
Sbjct: 379 WF 380
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 163/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 309 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 360
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V++D P A +
Sbjct: 361 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN------VIID-GPSTACLAGKR 404
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 405 LAYIEPNATAAQCTLDLLSD-----TPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLT 459
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 460 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 518
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 519 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 566
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 567 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 608
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 609 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 650
>gi|430004422|emb|CCF20217.1| Sensor protein [Rhizobium sp.]
Length = 1223
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 112/166 (67%)
Query: 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+ V++ ++ L RAEAAD AKS+FLA +SHEIRTPMNG+LGM LL +DL + Q+
Sbjct: 661 VTDVKEREAELTRLVERAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDTRQK 720
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
+ G AL+ +IN++LD +KI+A +++L F+ ++DV +L S + K I
Sbjct: 721 TFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAPFDPVEAIEDVATLLSSSAAEKDI 780
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
EL V V E VLGD GRFRQIITNLVGN+VKFTE+GH+F+ +H
Sbjct: 781 ELIVRGDASVKETVLGDAGRFRQIITNLVGNAVKFTEKGHVFIDLH 826
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 192/436 (44%), Gaps = 56/436 (12%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
I++ + D+ L V +EDTG+GIP + VF F Q D+S++R + GTG+GL+I+
Sbjct: 823 IDLHSEAVSDTDMMLTVRIEDTGLGIPDEKLKSVFEKFSQVDTSSTRRHEGTGLGLAITA 882
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVD 709
LVEL G I S GS F+ F E + + LP G + +V+D
Sbjct: 883 GLVELFGGHIEVTSEVGRGSVFTVHLPFPVVSE-------RGTNTVLPINTAGARVLVID 935
Query: 710 EKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIIL--VEKDCWIS 767
+ V + L G A+ GL + + +++ V D +
Sbjct: 936 DNAVNRRILTEQLTMWGFDTV-------AADGGAEGLAFMNEASRLGLVIDAVVLDYHMP 988
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
E +G +A + + + L + L + +++ DE A+ A +MKP RA+++
Sbjct: 989 -EMNGLDAA-RHIRADRRLDDLGIIFLTSMDMAGDENLFAELNIQAH--LMKPARANLLR 1044
Query: 828 ACLQQVL-STENKRQAGRG-------------VPNGSSFHQGLLR---GKKILVVDDNGV 870
A + V+ S KR+ +P + ++R +LV +DN V
Sbjct: 1045 ATIIDVVRSVRMKRRTAPVTAAAQAVAAPQLVLPVEGAASTPVVRSLPALDVLVAEDNEV 1104
Query: 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930
N++V L+ G E + A++ Q MD+ MP M+G +AT++IR++E
Sbjct: 1105 NQIVFTQILQGTGWRFEIVENGAKAVEAWQEKDPA-LILMDVSMPVMNGHQATQKIRELE 1163
Query: 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
+A GG H+PI+ +TA + + + CL GMD Y+SKP E L
Sbjct: 1164 KQA------GG------------HVPIIGVTAHALESDKELCLAAGMDDYMSKPISPELL 1205
Query: 991 YRELAKFFKSKPLSGA 1006
+++ + S +
Sbjct: 1206 EQKIKAWLGETSTSAS 1221
>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|378961034|ref|YP_005218520.1| Signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|374354906|gb|AEZ46667.1| Signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VPE V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYIEPNATAAQCTLDLLSD-----TPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 855
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VPE V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYIEPNATAAQCTLDLLSD-----TPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|402848505|ref|ZP_10896762.1| Two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
gi|402501252|gb|EJW12907.1| Two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
Length = 731
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 109/155 (70%)
Query: 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
+ E + RA+AA AKS+FLA VSHEIRTP+NGILGM LLLDT LS Q YA+ +
Sbjct: 209 RALAETRERADAASRAKSRFLAMVSHEIRTPLNGILGMTDLLLDTPLSPEQGAYAKAVKT 268
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
G+AL+ LI ++LD AKIEA KLEL A F L A++++V+ L + ++ +KGIE+A FV
Sbjct: 269 SGRALLTLIEDMLDFAKIEAGKLELVARPFRLAAVVEEVVELLAPRAHDKGIEIAAFVDP 328
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
++ + V+GD R RQ++ NL GN+VKFT G + +
Sbjct: 329 RLADPVIGDDARLRQVLLNLGGNAVKFTAEGSVVI 363
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 178/413 (43%), Gaps = 56/413 (13%)
Query: 583 FQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTG 642
F + S++ + + G+ + + V DTGIGI AQ R+F F QAD +R +GG+G
Sbjct: 355 FTAEGSVVIL--AEPGARVGEIALEVRDTGIGIAAEAQARIFEEFEQADGGAARKHGGSG 412
Query: 643 IGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG 702
+GL+IS+ +VE M G I+ S P G+ F T +++ + P G
Sbjct: 413 LGLAISRRIVEGMDGAIAVDSAPGDGARFRVTVPLPAAPGL-------ARAPEPTPDLAG 465
Query: 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762
+ +V P A HL+ G V++ + +S + + ++V++
Sbjct: 466 TRVAIVTTNPSAAEPVVRHLSAWGASVRVVAPDAADASLVDPAVGT---------VVVDR 516
Query: 763 DCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
+ + + P G ++++L N + E A GF+D ++ KP+R
Sbjct: 517 AIGPAAAAAIASTT----PPAGQR----RIVMLRPN-ERGELTDFLAHGFSDYLV-KPVR 566
Query: 823 ASMIAACL-QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKK 881
+ +A L T A VP+ ++ G ++LV +DN +N ++ L++
Sbjct: 567 TASLAGRLGAPAPGTAGPATAPTLVPDPAAA------GCRVLVAEDNDINALLVRALLER 620
Query: 882 FG----ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
G + AA+ A + + + MD+ MP MDGF AT RIR E
Sbjct: 621 MGHRPTLVGDGAAAVLAWEAAVSAGMPYALVLMDLHMPGMDGFAATARIRARE------- 673
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
A+ D P+LA+TAD D G+DG + KP + + L
Sbjct: 674 ----------AETDRARTPVLALTADAAPEEPDAVRAAGLDGLLVKPLDRDRL 716
>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
35469]
gi|422807992|ref|ZP_16856420.1| hsp90-like protein [Escherichia fergusonii B253]
gi|424815154|ref|ZP_18240305.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
ECD227]
gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia fergusonii ATCC 35469]
gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
ECD227]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTERG+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTERGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASI---SRRHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 35/203 (17%)
Query: 804 CDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKIL 863
+K K G ++KPL ++ + L++ NK Q + + SS + L ++
Sbjct: 621 AEKLKQEGVG-ACLLKPLTSTRLLPALKEF---GNKNQ----IHSLSSTDENKL-AMTVM 671
Query: 864 VVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEA 922
VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG A
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGIRA 729
Query: 923 TRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982
I Q+ + P++A+TA + ++ L GM Y++
Sbjct: 730 CELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDYLA 769
Query: 983 KPFEEENLYRELAKFFKSKPLSG 1005
KP EEE L+ L ++ KP SG
Sbjct: 770 KPIEEERLHNLLLRY---KPGSG 789
>gi|419233820|ref|ZP_13776592.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9B]
gi|378075627|gb|EHW37641.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9B]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|419187571|ref|ZP_13731081.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7D]
gi|419324368|ref|ZP_13866058.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12B]
gi|419335858|ref|ZP_13877380.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12D]
gi|378027489|gb|EHV90118.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7D]
gi|378163583|gb|EHX24535.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12B]
gi|378180734|gb|EHX41415.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12D]
Length = 895
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 260 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 319
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 320 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 379
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 380 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 427
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 428 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 459
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 460 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 489
Query: 672 SF 673
F
Sbjct: 490 WF 491
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 647 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 704
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 705 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 744
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 745 LAKPIEEERLHNLLLRY---KPGSG 766
>gi|419137930|ref|ZP_13682721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC5E]
gi|377982350|gb|EHV45602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC5E]
Length = 762
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 127 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 186
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 187 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 246
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 247 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 294
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 295 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 326
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 327 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 356
Query: 672 SF 673
F
Sbjct: 357 WF 358
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 514 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 571
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 572 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 611
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 612 LAKPIEEERLHNLLLRY---KPGSG 633
>gi|452853017|ref|YP_007494701.1| putative Histidine kinase [Desulfovibrio piezophilus]
gi|451896671|emb|CCH49550.1| putative Histidine kinase [Desulfovibrio piezophilus]
Length = 1485
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 111/157 (70%), Gaps = 3/157 (1%)
Query: 362 EDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ 421
E D K +EL AEAA +KS+FLA +SHE+RTP+NG+LGML L TDL+ QRDY
Sbjct: 1091 ERDLLKAKEL---AEAASQSKSEFLANMSHEVRTPLNGVLGMLQLAQTTDLTEEQRDYVD 1147
Query: 422 TAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
TA G++L+++IN++LD +KIEA KLE+ F+ ++ DVL F ++RNKGI+L +
Sbjct: 1148 TALSSGRSLLSIINDILDFSKIEAGKLEVVTEPFSFSQLVQDVLMTFRGQARNKGIDLVL 1207
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHI 518
+ D++PE ++G GR RQI+ NLVGN VKFT GH+
Sbjct: 1208 DLPDEIPEPLVGGKGRLRQILFNLVGNGVKFTTDGHV 1244
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 17/143 (11%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
GK+ LVV+DN VNR++AA L K G + A AL+KL++ FDA FMDIQMP MD
Sbjct: 1355 GKRFLVVEDNRVNRILAARMLAKLGHDSDVACDGWEALEKLKNED-FDAVFMDIQMPGMD 1413
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G T RIR + GS ++ +PI+AMTA + + + GMD
Sbjct: 1414 GVATTSRIRAAKP---------GSGINP-------EIPIVAMTAHAMLGDREVFIDSGMD 1457
Query: 979 GYVSKPFEEENLYRELAKFFKSK 1001
Y++KP E + + +A+ F K
Sbjct: 1458 EYIAKPVELDEISSTIARLFTRK 1480
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L++CVEDTGIGIP E +F PF Q D S R + GTG+GL I K LV+L+ G ++ +
Sbjct: 1262 LLICVEDTGIGIPDDKIEDIFEPFTQVDGSYVRQHQGTGLGLGIVKRLVDLLNGTLTIDT 1321
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
G+ T FG + E + + P G + +VV++ V + L
Sbjct: 1322 EEGRGTALYLTMEFGIESMSLAESLG-----NFPDRSSGKRFLVVEDNRVNRILAARMLA 1376
Query: 724 RLG 726
+LG
Sbjct: 1377 KLG 1379
>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
Length = 703
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ E++ H +E RAEAAD AKS FLATVSHEIRTP++GI+GM+ LLLDT L+ Q Y
Sbjct: 285 RAEEELHMAKE---RAEAADRAKSAFLATVSHEIRTPLHGIIGMIDLLLDTALTEEQASY 341
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
+T + L ++IN++LD +K+EA ++ELE V + LRA+++DV++L +S K +++
Sbjct: 342 GRTIGELSRLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVVNLLRVRSEQKNLDI 401
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+ +VP F+ GDP R RQ++ NL GN+VKFTE+G + +++ + R
Sbjct: 402 TCDIDREVPPFLRGDPIRLRQVLINLGGNAVKFTEKGKVALRIAMDSR 449
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 19/139 (13%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+IL+V+DN VN+ +A+ LKKFG + ++ + A++ ++ + MD QMPEMDG
Sbjct: 563 KRILLVEDNPVNQKLASIQLKKFGLPLLAVSNGREAVEAVRREK-YSLILMDCQMPEMDG 621
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
FEATR IR++E++ GG H+PI+AMTA + +ECL CGMD
Sbjct: 622 FEATREIRRIEAE------QGG------------HVPIVAMTARAMRGDREECLACGMDD 663
Query: 980 YVSKPFEEENLYRELAKFF 998
Y+SKP +L R L ++
Sbjct: 664 YISKPIRSADLRRILNRWI 682
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 23/232 (9%)
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+C DTGIGI R+F PF QAD ST+R YGGTG+GL+ISK LVELM G+I F S P
Sbjct: 467 IC--DTGIGITDEVAPRLFQPFSQADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIP 524
Query: 666 QVGSTFSFTAVFGKCKEYVFEDIK-QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNR 724
+G+TF FT + ED + Q K++ L P + ++V++ PV + L +
Sbjct: 525 GLGTTFWFTMPLLESSAQAAEDSRAQEKADLLLPELPEKRILLVEDNPVNQKLASIQLKK 584
Query: 725 LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA----QLLDW 780
G+ + S+ ++A + +K+ L+ DC + D GF A + ++
Sbjct: 585 FGLPLLAVSNGREAVEAVRR------EKYS----LILMDCQMPEMD-GFEATREIRRIEA 633
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+ GHV P + + A + D + G D I KP+R++ + L +
Sbjct: 634 EQGGHV---PIVAMTARAMRGDREECLACG--MDDYISKPIRSADLRRILNR 680
>gi|444926362|ref|ZP_21245647.1| signal transduction histidine-protein kinase BarA [Escherichia coli
09BKT078844]
gi|444538794|gb|ELV18640.1| signal transduction histidine-protein kinase BarA [Escherichia coli
09BKT078844]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKF 997
++KP EEE L+ L ++
Sbjct: 768 LAKPIEEERLHNLLLRY 784
>gi|425175628|ref|ZP_18573748.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA504]
gi|429021990|ref|ZP_19088515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0428]
gi|408090223|gb|EKH23500.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA504]
gi|427275486|gb|EKW40101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0428]
Length = 748
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 113 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 172
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 173 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 232
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 233 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 280
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 281 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 312
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 313 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 342
Query: 672 SF 673
F
Sbjct: 343 WF 344
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 500 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 557
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 558 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 597
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 598 LAKPIEEERLHNLLLRY---KPGSG 619
>gi|432486542|ref|ZP_19728453.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE212]
gi|433174664|ref|ZP_20359180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE232]
gi|431014893|gb|ELD28464.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE212]
gi|431690483|gb|ELJ55963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE232]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLFGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|417691038|ref|ZP_12340257.1| signal transduction histidine-protein kinase barA [Shigella boydii
5216-82]
gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
5216-82]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|416899064|ref|ZP_11928546.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_7v]
gi|417119217|ref|ZP_11969582.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2741]
gi|422780294|ref|ZP_16833079.1| hsp90-like protein [Escherichia coli TW10509]
gi|422800705|ref|ZP_16849202.1| hsp90-like protein [Escherichia coli M863]
gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_7v]
gi|386137570|gb|EIG78732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2741]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|415818471|ref|ZP_11508193.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1180]
gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1180]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPPNLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|432628412|ref|ZP_19864384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE77]
gi|431161705|gb|ELE62174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE77]
Length = 918
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
Length = 1349
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 126/198 (63%), Gaps = 3/198 (1%)
Query: 328 STPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQEL---KVRAEAADVAKSQ 384
+ PW FL ++ + I+ A + ++ + EL K +AEAA K++
Sbjct: 727 AVPWPWFRQLGFLALLSVGSCAIIVLACVAAIQYRRRGSLILELNRAKEQAEAASRHKTE 786
Query: 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIE 444
FLA +SHEIRTPMNG++GM LLLDT+L++ QRDYA T + G++L+ LIN++LD +K+E
Sbjct: 787 FLANMSHEIRTPMNGVIGMTGLLLDTELTTEQRDYAGTVRRSGESLLTLINDILDFSKVE 846
Query: 445 ARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITN 504
A KL +EA F+LR+ +++V + + K N+ ++L + P +GD GR RQ++TN
Sbjct: 847 AGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQYPVGAPRHFVGDAGRIRQVVTN 906
Query: 505 LVGNSVKFTERGHIFVKV 522
LVGN++KFT G I ++V
Sbjct: 907 LVGNAIKFTGEGSIVIEV 924
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 198/428 (46%), Gaps = 45/428 (10%)
Query: 583 FQSNASIINMMASNGGSEDVTLM-VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGT 641
F SI+ + E +M V + DTG GIP +F F Q D ST+R YGGT
Sbjct: 914 FTGEGSIVIEVVCESQDEARAVMRVAIHDTGPGIPSEKIGSLFEKFSQLDGSTTRKYGGT 973
Query: 642 GIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFK 701
G+GL+ISK LV LM G ++ SR GSTFSFT E + + G +
Sbjct: 974 GLGLAISKQLVSLMGGSMAVSSRLGEGSTFSFTLPLPLDANSPVEPLTAA-------GLR 1026
Query: 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE 761
GL+A++VD+ + V + G M S + + + A ++ D + I+
Sbjct: 1027 GLRALIVDDNEINRRVLHEQIIGWG-MRNGSFAAGEEALVALRAAHAAGDPYHFAIL--- 1082
Query: 762 KDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPL 821
D + G D A+ + K + + + +++L T++ + + K G D ++KP+
Sbjct: 1083 -DYRMPGMDGVEVARAI--KADDELRE--TVVVLLTSVGQWSEARQKESGIVDASLVKPV 1137
Query: 822 RASMIAACLQQVLSTENKRQAGRGV---PNGSSFHQGL-LR----GKKILVVDDNGVNRM 873
R S + L N A V P + L LR ++LV +DN VN+
Sbjct: 1138 RQSQLLNILSSCWVRTNSITAAPAVRPEPPVNEMRAALALRFGGVPVRVLVAEDNVVNQK 1197
Query: 874 VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933
V+A L K G + AA + A+ L +D FMD QMPEMDG+ ATR IR+ E
Sbjct: 1198 VSARMLDKLGIRADVAADGREAV-ALFGLVPYDLIFMDCQMPEMDGYAATREIRRRE--- 1253
Query: 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993
G +R +PI AMTA+V+ + CL GMD ++ KP + E L+
Sbjct: 1254 ------------GPGRR----VPIAAMTAEVLGGCRELCLAAGMDDHIPKPVKMEVLFET 1297
Query: 994 LAKFFKSK 1001
L ++ ++
Sbjct: 1298 LRRWIPAR 1305
>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M718]
gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M718]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O111:H- str. 11128]
gi|417200225|ref|ZP_12017462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0522]
gi|417211723|ref|ZP_12022022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
JB1-95]
gi|417593117|ref|ZP_12243810.1| signal transduction histidine-protein kinase barA [Escherichia coli
2534-86]
gi|419198371|ref|ZP_13741698.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC8A]
gi|419204688|ref|ZP_13747864.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8B]
gi|419886291|ref|ZP_14406932.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9570]
gi|419892903|ref|ZP_14412910.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9574]
gi|420092261|ref|ZP_14603975.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9602]
gi|420097786|ref|ZP_14609078.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9634]
gi|424773085|ref|ZP_18200166.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O111:H- str. 11128]
gi|345335209|gb|EGW67648.1| signal transduction histidine-protein kinase barA [Escherichia coli
2534-86]
gi|378045569|gb|EHW07963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC8A]
gi|378046836|gb|EHW09209.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8B]
gi|386188028|gb|EIH76841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0522]
gi|386195297|gb|EIH89533.1| signal transduction histidine-protein kinase BarA [Escherichia coli
JB1-95]
gi|388365496|gb|EIL29279.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9570]
gi|388369064|gb|EIL32684.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9574]
gi|394380563|gb|EJE58305.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9602]
gi|394383481|gb|EJE61081.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9634]
gi|421937334|gb|EKT94951.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
F11]
gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|422373090|ref|ZP_16453419.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
gi|427805947|ref|ZP_18973014.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli chi7122]
gi|427810540|ref|ZP_18977605.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli]
gi|432466935|ref|ZP_19709021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE205]
gi|432472087|ref|ZP_19714127.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE206]
gi|432582132|ref|ZP_19818546.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE57]
gi|432714496|ref|ZP_19949529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE8]
gi|433073980|ref|ZP_20260627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE129]
gi|433078934|ref|ZP_20265458.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE131]
gi|433121317|ref|ZP_20306983.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE157]
gi|433184453|ref|ZP_20368695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE85]
gi|443618818|ref|YP_007382674.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
F11]
gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
gi|412964129|emb|CCK48055.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli chi7122]
gi|412970719|emb|CCJ45369.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli]
gi|430992732|gb|ELD09101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE205]
gi|430996718|gb|ELD12993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE206]
gi|431122414|gb|ELE25283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE57]
gi|431255075|gb|ELF48334.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE8]
gi|431585466|gb|ELI57414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE129]
gi|431595332|gb|ELI65399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE131]
gi|431641150|gb|ELJ08894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE157]
gi|431704554|gb|ELJ69180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE85]
gi|443423326|gb|AGC88230.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
gi|432535150|ref|ZP_19772117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE234]
gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
gi|431059004|gb|ELD68380.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE234]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMGDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia
albertii TW07627]
gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia
albertii TW07627]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASI---SRRHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|419176305|ref|ZP_13720119.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7B]
gi|378031511|gb|EHV94098.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7B]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKQLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1712
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 113/155 (72%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K AEAA+ AKS+FLA +SHEIRTPMN ++GM LLL+T+L++ QRD+ +T
Sbjct: 1001 LEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTELLLNTELTTQQRDFVETVLTSS 1060
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
+AL+ +IN++LD +KIE+ KLELEA F+LR ++ V+ L + K+ +K IELA + +V
Sbjct: 1061 EALLTIINDILDFSKIESGKLELEAQPFDLRTCVEQVIDLLAPKAAHKDIELAYLIHPQV 1120
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P ++GD R RQI+ NL+ N++KFTE+G + + V
Sbjct: 1121 PTQIVGDLTRLRQILMNLLNNAIKFTEKGEVILSV 1155
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 184/420 (43%), Gaps = 71/420 (16%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
++ ++DTGIGIP R+F PF+QAD+S +R YGGTG+GL ISK L E+M G + S
Sbjct: 1171 ILFTIKDTGIGIPPDKMGRLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMSGYLWVES 1230
Query: 664 R---------------------PQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDL----PP 698
+ P GSTF F + + + S +L P
Sbjct: 1231 QGCVGGNPPPQWQAKKPVLSNLPYPGSTFYFAMTA--------QVVDHADSNELTLTYPI 1282
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII 758
+ + ++VD+ P + + + S +A + G+ Q DI
Sbjct: 1283 QLRNKRLLIVDDNPTNRKILHLQTEPWQMQTYTAQSGAEALALIDQGM-------QFDIA 1335
Query: 759 LVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIM 818
++ D + D AQ + + +G+ + LP L++L + D + + GF +
Sbjct: 1336 IL--DMQMPEMDGLTLAQEIRQR-SGYQY-LP-LVILTSWGQPDNDNALRNLGFT-AYLH 1389
Query: 819 KPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK--KILVVDDNGVNRMVAA 876
KP++ S + L L + R A P +Q L +IL+ +D VN+ VA
Sbjct: 1390 KPIKQSQLYDVLACTLENQPIR-AKLPYPYPPQINQHLAEQLPLRILLAEDIVVNQKVAL 1448
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
LKK G + A+ L LQ FD MD+ MPEMDG E +RRIRQ +
Sbjct: 1449 LMLKKMGYRADVVANGLEVLAVLQH-QPFDVVLMDVNMPEMDGLETSRRIRQTWN----- 1502
Query: 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
D + I+AMTA+ + + CL GMD Y+SKP + E L + L K
Sbjct: 1503 --------------DRPY--IIAMTANAMQGDREACLAAGMDDYISKPLQLEELAKALGK 1546
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
LR K++L+VDDN NR + + + A S AL + FD +D+QMPE
Sbjct: 1284 LRNKRLLIVDDNPTNRKILHLQTEPWQMQTYTAQSGAEALALIDQGMQFDIAILDMQMPE 1343
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
MDG + IRQ + +LP++ +T+ + G
Sbjct: 1344 MDGLTLAQEIRQ--------------------RSGYQYLPLVILTSWGQPDNDNALRNLG 1383
Query: 977 MDGYVSKPFEEENLYRELAKFFKSKPL 1003
Y+ KP ++ LY LA +++P+
Sbjct: 1384 FTAYLHKPIKQSQLYDVLACTLENQPI 1410
>gi|422970083|ref|ZP_16973876.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA124]
gi|371600461|gb|EHN89233.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA124]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|433199479|ref|ZP_20383371.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE94]
gi|431719601|gb|ELJ83655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE94]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|421775443|ref|ZP_16212052.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
gi|408459329|gb|EKJ83111.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|416275346|ref|ZP_11643934.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
74-1112]
gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
74-1112]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H736]
gi|432637993|ref|ZP_19873860.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE81]
gi|432705538|ref|ZP_19940634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE171]
gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H736]
gi|431169408|gb|ELE69627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE81]
gi|431241322|gb|ELF35758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE171]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|417221179|ref|ZP_12024619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.154]
gi|386200981|gb|EIH99971.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.154]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMSGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|416279324|ref|ZP_11644844.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
Length = 918
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|442596326|ref|ZP_21014139.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|441655338|emb|CCQ00052.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|387608423|ref|YP_006097279.1| two-component sensor kinase/response regulator [Escherichia coli
042]
gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli
042]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|251786060|ref|YP_003000364.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str.
REL606]
gi|254289471|ref|YP_003055219.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BL21(DE3)]
gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli B str. REL606]
gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BL21(DE3)]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|420348672|ref|ZP_14850054.1| signal transduction histidine-protein kinase BarA [Shigella boydii
965-58]
gi|391267713|gb|EIQ26644.1| signal transduction histidine-protein kinase BarA [Shigella boydii
965-58]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella
dysenteriae 1012]
gi|417673505|ref|ZP_12322956.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 155-74]
gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella
dysenteriae 1012]
gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 155-74]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|432544398|ref|ZP_19781238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE236]
gi|432549888|ref|ZP_19786653.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE237]
gi|431073333|gb|ELD80984.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE236]
gi|431079056|gb|ELD86035.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE237]
Length = 763
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 128 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 187
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 188 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 247
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 248 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 295
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 296 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 327
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 328 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 357
Query: 672 SF 673
F
Sbjct: 358 WF 359
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 515 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 572
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 573 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 612
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 613 LAKPIEEERLHNLLLRY---KPGSG 634
>gi|418268018|ref|ZP_12886896.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei str. Moseley]
gi|397897575|gb|EJL13981.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei str. Moseley]
Length = 920
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
2362-75]
gi|419030280|ref|ZP_13577436.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2C]
gi|419040966|ref|ZP_13587988.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2E]
gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
2362-75]
gi|377875657|gb|EHU40266.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2C]
gi|377888068|gb|EHU52540.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2E]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
Sakai]
gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MG1655]
gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4113]
gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4401]
gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4501]
gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4486]
gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4196]
gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4076]
gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC869]
gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC508]
gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase BarA [Escherichia coli str. K-12
substr. DH10B]
gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
53638]
gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B7A]
gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E110019]
gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B171]
gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
101-1]
gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC4024]
gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4206]
gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4045]
gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4042]
gi|209398921|ref|YP_002272251.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC4115]
gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. TW14588]
gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase BarA [Escherichia coli BW2952]
gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
TW14359]
gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O103:H2 str. 12009]
gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
11368]
gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O157:H7 str. FRIK2000]
gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O157:H7 str. FRIK966]
gi|291284115|ref|YP_003500933.1| signal transduction histidine-protein kinase barA [Escherichia coli
O55:H7 str. CB9615]
gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
B354]
gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 1617]
gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
1827-70]
gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA143]
gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA271]
gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA280]
gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H591]
gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H299]
gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
regulatory system with UvrY [Shigella sp. D9]
gi|383179949|ref|YP_005457954.1| hybrid sensory histidine kinase BarA [Shigella sonnei 53G]
gi|386281827|ref|ZP_10059486.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
4_1_40B]
gi|386594474|ref|YP_006090874.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
gi|386615508|ref|YP_006135174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
UMNK88]
gi|386625503|ref|YP_006145231.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O7:K1 str. CE10]
gi|386630521|ref|YP_006150241.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i2']
gi|386635441|ref|YP_006155160.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i14']
gi|386640266|ref|YP_006107064.1| sensor-regulator [Escherichia coli ABU 83972]
gi|386706046|ref|YP_006169893.1| Signal transduction histidine-protein kinase barA [Escherichia coli
P12b]
gi|387508142|ref|YP_006160398.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
RM12579]
gi|387613408|ref|YP_006116524.1| two-component sensor kinase/response regulator [Escherichia coli
ETEC H10407]
gi|387622469|ref|YP_006130097.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
gi|387883966|ref|YP_006314268.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
gi|388478802|ref|YP_490994.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. W3110]
gi|404376095|ref|ZP_10981271.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
1_1_43]
gi|407470660|ref|YP_006782897.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480679|ref|YP_006777828.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2011C-3493]
gi|410481245|ref|YP_006768791.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415779156|ref|ZP_11489928.1| signal transduction histidine-protein kinase barA [Escherichia coli
3431]
gi|415786603|ref|ZP_11493659.1| signal transduction histidine-protein kinase barA [Escherichia coli
EPECa14]
gi|415802723|ref|ZP_11500083.1| signal transduction histidine-protein kinase barA [Escherichia coli
E128010]
gi|415830226|ref|ZP_11516128.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1357]
gi|415839704|ref|ZP_11521446.1| signal transduction histidine-protein kinase barA [Escherichia coli
RN587/1]
gi|415845677|ref|ZP_11525175.1| signal transduction histidine-protein kinase barA [Shigella sonnei
53G]
gi|415862006|ref|ZP_11535538.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
gi|415875153|ref|ZP_11541952.1| sensor protein GacS [Escherichia coli MS 79-10]
gi|416314607|ref|ZP_11658842.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1044]
gi|416321939|ref|ZP_11663787.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC1212]
gi|416327678|ref|ZP_11667598.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1125]
gi|416340193|ref|ZP_11675208.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
gi|416776895|ref|ZP_11874929.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
G5101]
gi|416788355|ref|ZP_11879854.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
493-89]
gi|416800342|ref|ZP_11884766.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
H 2687]
gi|416821567|ref|ZP_11894181.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
USDA 5905]
gi|416831986|ref|ZP_11899276.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
LSU-61]
gi|417123432|ref|ZP_11972342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0246]
gi|417131759|ref|ZP_11976544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0588]
gi|417140245|ref|ZP_11983495.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0259]
gi|417151085|ref|ZP_11990824.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2264]
gi|417158307|ref|ZP_11995931.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0497]
gi|417166538|ref|ZP_11999894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0741]
gi|417176363|ref|ZP_12006159.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2608]
gi|417186397|ref|ZP_12011540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0624]
gi|417251766|ref|ZP_12043531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0967]
gi|417262307|ref|ZP_12049781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.3916]
gi|417269489|ref|ZP_12056849.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.3884]
gi|417272771|ref|ZP_12060120.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.4168]
gi|417277282|ref|ZP_12064607.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2303]
gi|417280932|ref|ZP_12068232.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3003]
gi|417290845|ref|ZP_12078126.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B41]
gi|417295753|ref|ZP_12083000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
900105 (10e)]
gi|417309227|ref|ZP_12096066.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
PCN033]
gi|417582274|ref|ZP_12233075.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_B2F1]
gi|417587802|ref|ZP_12238568.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_C165-02]
gi|417598084|ref|ZP_12248718.1| signal transduction histidine-protein kinase barA [Escherichia coli
3030-1]
gi|417603442|ref|ZP_12254009.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_94C]
gi|417609411|ref|ZP_12259911.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_DG131-3]
gi|417614242|ref|ZP_12264699.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_EH250]
gi|417619370|ref|ZP_12269783.1| signal transduction histidine-protein kinase barA [Escherichia coli
G58-1]
gi|417624772|ref|ZP_12275068.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_H.1.8]
gi|417630091|ref|ZP_12280327.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_MHI813]
gi|417635804|ref|ZP_12286015.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_S1191]
gi|417640573|ref|ZP_12290711.1| signal transduction histidine-protein kinase barA [Escherichia coli
TX1999]
gi|417668179|ref|ZP_12317721.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_O31]
gi|417683640|ref|ZP_12332987.1| signal transduction histidine-protein kinase barA [Shigella boydii
3594-74]
gi|417866856|ref|ZP_12511896.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
C227-11]
gi|417945406|ref|ZP_12588639.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
gi|417975626|ref|ZP_12616424.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
gi|418041346|ref|ZP_12679571.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
gi|418304341|ref|ZP_12916135.1| signal transduction histidine-protein kinase barA [Escherichia coli
UMNF18]
gi|418942462|ref|ZP_13495736.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43
str. T22]
gi|418956840|ref|ZP_13508765.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
gi|419046674|ref|ZP_13593609.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3A]
gi|419052515|ref|ZP_13599382.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3B]
gi|419058508|ref|ZP_13605311.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3C]
gi|419063999|ref|ZP_13610724.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3D]
gi|419070949|ref|ZP_13616564.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3E]
gi|419076907|ref|ZP_13622413.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3F]
gi|419081973|ref|ZP_13627420.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4A]
gi|419087811|ref|ZP_13633164.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4B]
gi|419093927|ref|ZP_13639209.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4C]
gi|419099496|ref|ZP_13644690.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4D]
gi|419105322|ref|ZP_13650449.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4E]
gi|419110787|ref|ZP_13655841.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4F]
gi|419116159|ref|ZP_13661174.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5A]
gi|419127231|ref|ZP_13672109.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5C]
gi|419132808|ref|ZP_13677642.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5D]
gi|419143712|ref|ZP_13688446.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6A]
gi|419149710|ref|ZP_13694362.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6B]
gi|419155204|ref|ZP_13699763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6C]
gi|419160516|ref|ZP_13705017.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6D]
gi|419165567|ref|ZP_13710021.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6E]
gi|419171483|ref|ZP_13715368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7A]
gi|419192863|ref|ZP_13736314.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7E]
gi|419211115|ref|ZP_13754188.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8C]
gi|419217048|ref|ZP_13760044.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8D]
gi|419222794|ref|ZP_13765711.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8E]
gi|419228204|ref|ZP_13771052.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9A]
gi|419239198|ref|ZP_13781909.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9C]
gi|419244715|ref|ZP_13787350.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9D]
gi|419250522|ref|ZP_13793095.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9E]
gi|419256322|ref|ZP_13798829.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10A]
gi|419262620|ref|ZP_13805031.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10B]
gi|419268739|ref|ZP_13811084.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10C]
gi|419274043|ref|ZP_13816334.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10D]
gi|419279290|ref|ZP_13821534.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10E]
gi|419285471|ref|ZP_13827640.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10F]
gi|419290804|ref|ZP_13832893.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11A]
gi|419296088|ref|ZP_13838131.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11B]
gi|419301544|ref|ZP_13843541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11C]
gi|419307669|ref|ZP_13849567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11D]
gi|419312684|ref|ZP_13854544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11E]
gi|419318071|ref|ZP_13859872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12A]
gi|419341213|ref|ZP_13882674.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12E]
gi|419346457|ref|ZP_13887828.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13A]
gi|419350919|ref|ZP_13892252.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13B]
gi|419356322|ref|ZP_13897575.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13C]
gi|419366514|ref|ZP_13907670.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13E]
gi|419371254|ref|ZP_13912367.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC14A]
gi|419376752|ref|ZP_13917775.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14B]
gi|419382065|ref|ZP_13923011.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14C]
gi|419387406|ref|ZP_13928279.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14D]
gi|419392884|ref|ZP_13933687.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15A]
gi|419397864|ref|ZP_13938632.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15B]
gi|419403271|ref|ZP_13943991.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15C]
gi|419408435|ref|ZP_13949121.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15D]
gi|419701586|ref|ZP_14229185.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
gi|419805177|ref|ZP_14330320.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
gi|419811308|ref|ZP_14336184.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
P4]
gi|419862064|ref|ZP_14384681.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25
str. CVM9340]
gi|419867629|ref|ZP_14389944.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
CVM9450]
gi|419875036|ref|ZP_14396917.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9534]
gi|419885838|ref|ZP_14406502.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9545]
gi|419901690|ref|ZP_14421005.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9942]
gi|419910574|ref|ZP_14429090.1| signal transduction histidine-protein kinase barA [Escherichia coli
O26:H11 str. CVM10026]
gi|419920079|ref|ZP_14438211.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
gi|419924275|ref|ZP_14442168.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
gi|419927198|ref|ZP_14444936.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
gi|419934569|ref|ZP_14451676.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
gi|419948385|ref|ZP_14464682.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
gi|420099313|ref|ZP_14610548.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9455]
gi|420115209|ref|ZP_14624786.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10021]
gi|420123299|ref|ZP_14632191.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10030]
gi|420128790|ref|ZP_14637338.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10224]
gi|420134441|ref|ZP_14642548.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9952]
gi|420271077|ref|ZP_14773431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA22]
gi|420276797|ref|ZP_14779079.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA40]
gi|420282434|ref|ZP_14784667.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW06591]
gi|420288050|ref|ZP_14790234.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10246]
gi|420293793|ref|ZP_14795908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW11039]
gi|420299711|ref|ZP_14801757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09109]
gi|420305692|ref|ZP_14807682.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10119]
gi|420311184|ref|ZP_14813114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1738]
gi|420316890|ref|ZP_14818763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1734]
gi|420327153|ref|ZP_14828899.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri CCH060]
gi|420354166|ref|ZP_14855256.1| signal transduction histidine-protein kinase BarA [Shigella boydii
4444-74]
gi|420360096|ref|ZP_14861057.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3226-85]
gi|420364699|ref|ZP_14865573.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei 4822-66]
gi|420381930|ref|ZP_14881370.1| signal transduction histidine-protein kinase BarA [Shigella
dysenteriae 225-75]
gi|420386876|ref|ZP_14886222.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EPECa12]
gi|420392768|ref|ZP_14892016.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli EPEC C342-62]
gi|421683801|ref|ZP_16123592.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 1485-80]
gi|421813777|ref|ZP_16249489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0416]
gi|421825606|ref|ZP_16260961.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK920]
gi|421832303|ref|ZP_16267587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA7]
gi|422331782|ref|ZP_16412797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4_1_47FAA]
gi|422355752|ref|ZP_16436459.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|422363517|ref|ZP_16444054.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|422383134|ref|ZP_16463286.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|422760244|ref|ZP_16814004.1| hsp90-like protein [Escherichia coli E1167]
gi|422767711|ref|ZP_16821437.1| hsp90-like protein [Escherichia coli E1520]
gi|422775992|ref|ZP_16829647.1| hsp90-like protein [Escherichia coli H120]
gi|422787693|ref|ZP_16840431.1| hsp90-like protein [Escherichia coli H489]
gi|422791913|ref|ZP_16844615.1| hsp90-like protein [Escherichia coli TA007]
gi|422817900|ref|ZP_16866113.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M919]
gi|422828163|ref|ZP_16876335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B093]
gi|422834276|ref|ZP_16882339.1| signal transduction histidine-protein kinase BarA [Escherichia coli
E101]
gi|422988887|ref|ZP_16979660.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C227-11]
gi|422995779|ref|ZP_16986543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C236-11]
gi|423000925|ref|ZP_16991679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 09-7901]
gi|423004594|ref|ZP_16995340.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 04-8351]
gi|423011096|ref|ZP_17001830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-3677]
gi|423020324|ref|ZP_17011033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4404]
gi|423025490|ref|ZP_17016187.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4522]
gi|423031311|ref|ZP_17021998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4623]
gi|423039136|ref|ZP_17029810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044256|ref|ZP_17034923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045985|ref|ZP_17036645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054523|ref|ZP_17043330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061498|ref|ZP_17050294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423703876|ref|ZP_17678301.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H730]
gi|423706938|ref|ZP_17681321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B799]
gi|423726588|ref|ZP_17700593.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA31]
gi|424078891|ref|ZP_17815871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA505]
gi|424085351|ref|ZP_17821847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA517]
gi|424091765|ref|ZP_17827699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1996]
gi|424098398|ref|ZP_17833700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1985]
gi|424104630|ref|ZP_17839392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1990]
gi|424111291|ref|ZP_17845527.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93-001]
gi|424117228|ref|ZP_17851067.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA3]
gi|424123410|ref|ZP_17856731.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA5]
gi|424129568|ref|ZP_17862475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA9]
gi|424135880|ref|ZP_17868342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA10]
gi|424142429|ref|ZP_17874310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA14]
gi|424148843|ref|ZP_17880219.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA15]
gi|424154668|ref|ZP_17885617.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA24]
gi|424252512|ref|ZP_17891178.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA25]
gi|424330865|ref|ZP_17897084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA28]
gi|424451105|ref|ZP_17902801.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA32]
gi|424457301|ref|ZP_17908432.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA33]
gi|424463750|ref|ZP_17914170.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA39]
gi|424470071|ref|ZP_17919893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA41]
gi|424476590|ref|ZP_17925908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA42]
gi|424482350|ref|ZP_17931330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07945]
gi|424488517|ref|ZP_17937078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09098]
gi|424495112|ref|ZP_17942802.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09195]
gi|424501877|ref|ZP_17948773.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4203]
gi|424508127|ref|ZP_17954523.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4196]
gi|424515458|ref|ZP_17960128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14313]
gi|424521673|ref|ZP_17965799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14301]
gi|424527558|ref|ZP_17971275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4421]
gi|424533713|ref|ZP_17977062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4422]
gi|424545864|ref|ZP_17988262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4402]
gi|424552105|ref|ZP_17993960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4439]
gi|424558282|ref|ZP_17999699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4436]
gi|424564626|ref|ZP_18005630.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4437]
gi|424570764|ref|ZP_18011318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4448]
gi|424576920|ref|ZP_18016986.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1845]
gi|424582748|ref|ZP_18022395.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1863]
gi|424754069|ref|ZP_18181989.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424765849|ref|ZP_18193218.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CFSAN001630]
gi|425099421|ref|ZP_18502153.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4870]
gi|425105516|ref|ZP_18507835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.2239]
gi|425111531|ref|ZP_18513452.1| signal transduction histidine-protein kinase BarA [Escherichia coli
6.0172]
gi|425116313|ref|ZP_18518104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0566]
gi|425127452|ref|ZP_18528621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0586]
gi|425133187|ref|ZP_18534037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.2524]
gi|425139773|ref|ZP_18540155.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0833]
gi|425145481|ref|ZP_18545479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0869]
gi|425151595|ref|ZP_18551210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.0221]
gi|425157468|ref|ZP_18556732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA34]
gi|425169564|ref|ZP_18568038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA507]
gi|425181657|ref|ZP_18579353.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1999]
gi|425187925|ref|ZP_18585200.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1997]
gi|425194696|ref|ZP_18591465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE1487]
gi|425201169|ref|ZP_18597378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE037]
gi|425207558|ref|ZP_18603355.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK2001]
gi|425213310|ref|ZP_18608712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA4]
gi|425219433|ref|ZP_18614399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA23]
gi|425225983|ref|ZP_18620451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA49]
gi|425232244|ref|ZP_18626285.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA45]
gi|425238164|ref|ZP_18631884.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TT12B]
gi|425244383|ref|ZP_18637689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
MA6]
gi|425250543|ref|ZP_18643485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5905]
gi|425256373|ref|ZP_18648891.1| signal transduction histidine-protein kinase BarA [Escherichia coli
CB7326]
gi|425262635|ref|ZP_18654641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC96038]
gi|425268633|ref|ZP_18660264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5412]
gi|425279157|ref|ZP_18670390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ARS4.2123]
gi|425284476|ref|ZP_18675508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW00353]
gi|425289917|ref|ZP_18680751.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3006]
gi|425296067|ref|ZP_18686262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA38]
gi|425301624|ref|ZP_18691509.1| signal transduction histidine-protein kinase BarA [Escherichia coli
07798]
gi|425306521|ref|ZP_18696216.1| signal transduction histidine-protein kinase BarA [Escherichia coli
N1]
gi|425312771|ref|ZP_18701954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1735]
gi|425318760|ref|ZP_18707550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1736]
gi|425324835|ref|ZP_18713202.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1737]
gi|425331198|ref|ZP_18719050.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1846]
gi|425337378|ref|ZP_18724747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1847]
gi|425343711|ref|ZP_18730602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1848]
gi|425349517|ref|ZP_18735987.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1849]
gi|425355817|ref|ZP_18741885.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1850]
gi|425361778|ref|ZP_18747426.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1856]
gi|425367972|ref|ZP_18753121.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1862]
gi|425374305|ref|ZP_18758949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1864]
gi|425380973|ref|ZP_18764982.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1865]
gi|425387199|ref|ZP_18770758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1866]
gi|425393851|ref|ZP_18776960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1868]
gi|425399986|ref|ZP_18782693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1869]
gi|425406074|ref|ZP_18788297.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1870]
gi|425412462|ref|ZP_18794226.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE098]
gi|425418788|ref|ZP_18800059.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK523]
gi|425423606|ref|ZP_18804769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1288]
gi|425430045|ref|ZP_18810657.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1304]
gi|428948477|ref|ZP_19020757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1467]
gi|428954560|ref|ZP_19026358.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1042]
gi|428960537|ref|ZP_19031842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
89.0511]
gi|428967155|ref|ZP_19037874.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0091]
gi|428972950|ref|ZP_19043288.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0039]
gi|428979471|ref|ZP_19049294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.2281]
gi|428985116|ref|ZP_19054512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0055]
gi|428991275|ref|ZP_19060266.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0056]
gi|429003405|ref|ZP_19071525.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0183]
gi|429016041|ref|ZP_19082934.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0943]
gi|429027937|ref|ZP_19093940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0427]
gi|429034126|ref|ZP_19099651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0939]
gi|429040204|ref|ZP_19105309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0932]
gi|429045977|ref|ZP_19110691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0107]
gi|429051485|ref|ZP_19116053.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0003]
gi|429056899|ref|ZP_19121212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.1742]
gi|429062387|ref|ZP_19126396.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0007]
gi|429068664|ref|ZP_19132128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0672]
gi|429074585|ref|ZP_19137838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0678]
gi|429079821|ref|ZP_19142956.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0713]
gi|429720353|ref|ZP_19255280.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772253|ref|ZP_19304273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02030]
gi|429777200|ref|ZP_19309174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785925|ref|ZP_19317820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02092]
gi|429791815|ref|ZP_19323669.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02093]
gi|429792664|ref|ZP_19324512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02281]
gi|429799239|ref|ZP_19331037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02318]
gi|429802856|ref|ZP_19334616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02913]
gi|429812652|ref|ZP_19344335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03439]
gi|429813200|ref|ZP_19344879.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-04080]
gi|429818408|ref|ZP_19350042.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03943]
gi|429827831|ref|ZP_19358870.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0109]
gi|429834192|ref|ZP_19364531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0010]
gi|429904759|ref|ZP_19370738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908895|ref|ZP_19374859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914769|ref|ZP_19380716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919799|ref|ZP_19385730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925619|ref|ZP_19391532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929555|ref|ZP_19395457.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429936094|ref|ZP_19401980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941774|ref|ZP_19407648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944455|ref|ZP_19410317.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429952013|ref|ZP_19417859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955362|ref|ZP_19421194.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432354693|ref|ZP_19597962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE2]
gi|432366268|ref|ZP_19609387.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE10]
gi|432377958|ref|ZP_19620945.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE12]
gi|432382485|ref|ZP_19625425.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE15]
gi|432388417|ref|ZP_19631299.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE16]
gi|432393240|ref|ZP_19636069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE21]
gi|432403044|ref|ZP_19645793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE26]
gi|432412907|ref|ZP_19655567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE39]
gi|432418237|ref|ZP_19660833.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE44]
gi|432427314|ref|ZP_19669805.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE181]
gi|432432982|ref|ZP_19675407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE187]
gi|432437464|ref|ZP_19679851.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE188]
gi|432457805|ref|ZP_19699985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE201]
gi|432461775|ref|ZP_19703917.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE204]
gi|432477004|ref|ZP_19718996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE208]
gi|432482095|ref|ZP_19724047.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE210]
gi|432496800|ref|ZP_19738595.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE214]
gi|432505544|ref|ZP_19747265.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE220]
gi|432515048|ref|ZP_19752269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE224]
gi|432518872|ref|ZP_19756054.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE228]
gi|432524938|ref|ZP_19762063.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE230]
gi|432527577|ref|ZP_19764663.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE233]
gi|432539042|ref|ZP_19775940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE235]
gi|432565046|ref|ZP_19801620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE51]
gi|432569826|ref|ZP_19806335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE53]
gi|432577008|ref|ZP_19813462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE56]
gi|432593959|ref|ZP_19830272.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE60]
gi|432603430|ref|ZP_19839672.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE66]
gi|432608626|ref|ZP_19844809.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE67]
gi|432612766|ref|ZP_19848924.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE72]
gi|432622992|ref|ZP_19859015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE76]
gi|432632543|ref|ZP_19868465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE80]
gi|432642252|ref|ZP_19878080.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE83]
gi|432647318|ref|ZP_19883104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE86]
gi|432652267|ref|ZP_19888018.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE87]
gi|432656909|ref|ZP_19892610.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE93]
gi|432661989|ref|ZP_19897627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE111]
gi|432667245|ref|ZP_19902822.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE116]
gi|432671860|ref|ZP_19907386.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE119]
gi|432675886|ref|ZP_19911341.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE142]
gi|432681388|ref|ZP_19916755.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE143]
gi|432686596|ref|ZP_19921889.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE156]
gi|432687987|ref|ZP_19923264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE161]
gi|432700177|ref|ZP_19935328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE169]
gi|432719893|ref|ZP_19954859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE9]
gi|432733526|ref|ZP_19968352.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE45]
gi|432738238|ref|ZP_19972993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE42]
gi|432746742|ref|ZP_19981405.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE43]
gi|432751206|ref|ZP_19985803.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE29]
gi|432760612|ref|ZP_19995103.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE46]
gi|432766132|ref|ZP_20000554.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE48]
gi|432771703|ref|ZP_20006024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE50]
gi|432775831|ref|ZP_20010097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE54]
gi|432784657|ref|ZP_20018835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE63]
gi|432793938|ref|ZP_20028020.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE78]
gi|432795439|ref|ZP_20029499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE79]
gi|432806944|ref|ZP_20040859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE91]
gi|432810467|ref|ZP_20044345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE101]
gi|432816501|ref|ZP_20050263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE115]
gi|432828404|ref|ZP_20062022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE135]
gi|432835714|ref|ZP_20069248.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE136]
gi|432845759|ref|ZP_20078493.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE141]
gi|432853904|ref|ZP_20082449.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE144]
gi|432863894|ref|ZP_20087706.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE146]
gi|432870214|ref|ZP_20090671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE147]
gi|432876674|ref|ZP_20094562.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE154]
gi|432887876|ref|ZP_20101804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE158]
gi|432906143|ref|ZP_20114871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE194]
gi|432914086|ref|ZP_20119626.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE190]
gi|432935737|ref|ZP_20135005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE184]
gi|432939222|ref|ZP_20137372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE183]
gi|432948834|ref|ZP_20143757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE196]
gi|432956436|ref|ZP_20148135.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE197]
gi|432963124|ref|ZP_20152543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE202]
gi|432968838|ref|ZP_20157750.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE203]
gi|432972902|ref|ZP_20161766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE207]
gi|432974894|ref|ZP_20163729.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE209]
gi|432986505|ref|ZP_20175223.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE215]
gi|432996449|ref|ZP_20185033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE218]
gi|433001020|ref|ZP_20189542.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE223]
gi|433019858|ref|ZP_20208038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE105]
gi|433039749|ref|ZP_20227345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE113]
gi|433044310|ref|ZP_20231799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE117]
gi|433049168|ref|ZP_20236511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE120]
gi|433054422|ref|ZP_20241591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE122]
gi|433059228|ref|ZP_20246268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE124]
gi|433064191|ref|ZP_20251105.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE125]
gi|433069068|ref|ZP_20255848.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE128]
gi|433083657|ref|ZP_20270111.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE133]
gi|433088427|ref|ZP_20274794.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE137]
gi|433093139|ref|ZP_20279398.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE138]
gi|433102330|ref|ZP_20288407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE145]
gi|433116632|ref|ZP_20302419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE153]
gi|433126302|ref|ZP_20311855.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE160]
gi|433131304|ref|ZP_20316735.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE163]
gi|433135965|ref|ZP_20321303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE166]
gi|433140370|ref|ZP_20325621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE167]
gi|433145346|ref|ZP_20330485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE168]
gi|433150289|ref|ZP_20335304.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE174]
gi|433159805|ref|ZP_20344636.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE177]
gi|433179609|ref|ZP_20364000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE82]
gi|433189530|ref|ZP_20373623.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE88]
gi|433194811|ref|ZP_20378793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE90]
gi|433208866|ref|ZP_20392538.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE97]
gi|433213650|ref|ZP_20397238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE99]
gi|442594308|ref|ZP_21012222.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442603658|ref|ZP_21018529.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
Nissle 1917]
gi|444932062|ref|ZP_21251099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0814]
gi|444937492|ref|ZP_21256267.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0815]
gi|444943136|ref|ZP_21261651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0816]
gi|444948652|ref|ZP_21266962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0839]
gi|444954167|ref|ZP_21272258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0848]
gi|444959681|ref|ZP_21277532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1753]
gi|444964836|ref|ZP_21282434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1775]
gi|444970820|ref|ZP_21288181.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1793]
gi|444976102|ref|ZP_21293220.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1805]
gi|444981496|ref|ZP_21298406.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ATCC 700728]
gi|444986897|ref|ZP_21303677.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA11]
gi|444992198|ref|ZP_21308840.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA19]
gi|444997503|ref|ZP_21314000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA13]
gi|445003076|ref|ZP_21319465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA2]
gi|445008508|ref|ZP_21324747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA47]
gi|445013614|ref|ZP_21329721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA48]
gi|445019515|ref|ZP_21335478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA8]
gi|445024898|ref|ZP_21340720.1| signal transduction histidine-protein kinase BarA [Escherichia coli
7.1982]
gi|445030320|ref|ZP_21345992.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1781]
gi|445035741|ref|ZP_21351271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1762]
gi|445041367|ref|ZP_21356739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA35]
gi|445046594|ref|ZP_21361844.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4880]
gi|445052136|ref|ZP_21367176.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0083]
gi|445057868|ref|ZP_21372726.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0670]
gi|450191892|ref|ZP_21891440.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
gi|450220996|ref|ZP_21896490.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
gi|452969389|ref|ZP_21967616.1| sensory histidine kinase [Escherichia coli O157:H7 str. EC4009]
gi|83288337|sp|P0AEC7.1|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
gi|83288338|sp|P0AEC6.1|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
gi|83288339|sp|P0AEC5.1|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MG1655]
gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
Ss046]
gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K12 substr. W3110]
gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli
HS]
gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E24377A]
gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. DH10B]
gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
SMS-3-5]
gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii
CDC 3083-94]
gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4196]
gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4113]
gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
53638]
gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4076]
gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4401]
gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4486]
gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4501]
gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC869]
gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC508]
gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B7A]
gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E110019]
gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B171]
gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
101-1]
gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4206]
gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4045]
gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4042]
gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4115]
gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. TW14588]
gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli IAI1]
gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli UMN026]
gi|226839460|gb|EEH71481.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
1_1_43]
gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BW2952]
gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O157:H7 str. TW14359]
gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O26:H11 str. 11368]
gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O103:H2 str. 12009]
gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
O55:H7 str. CB9615]
gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
B354]
gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 1617]
gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli
ETEC H10407]
gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
1827-70]
gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
3431]
gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC1212]
gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
G5101]
gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
493-89]
gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
H 2687]
gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
LSU-61]
gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
EPECa14]
gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
E128010]
gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
53G]
gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1357]
gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
RN587/1]
gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1044]
gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1125]
gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA143]
gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA271]
gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA280]
gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H591]
gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H299]
gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
3594-74]
gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
regulatory system with UvrY [Shigella sp. D9]
gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
UMNK88]
gi|338769207|gb|EGP23988.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
PCN033]
gi|339416439|gb|AEJ58111.1| signal transduction histidine-protein kinase barA [Escherichia coli
UMNF18]
gi|341920145|gb|EGT69754.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
C227-11]
gi|342362805|gb|EGU26919.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
gi|342929555|gb|EGU98277.1| sensor protein GacS [Escherichia coli MS 79-10]
gi|344194787|gb|EGV48859.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
gi|345334137|gb|EGW66582.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_C165-02]
gi|345335731|gb|EGW68168.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_B2F1]
gi|345348964|gb|EGW81255.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_94C]
gi|345351904|gb|EGW84156.1| signal transduction histidine-protein kinase barA [Escherichia coli
3030-1]
gi|345356622|gb|EGW88823.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_DG131-3]
gi|345361276|gb|EGW93437.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_EH250]
gi|345371662|gb|EGX03631.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_MHI813]
gi|345374683|gb|EGX06634.1| signal transduction histidine-protein kinase barA [Escherichia coli
G58-1]
gi|345376217|gb|EGX08160.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_H.1.8]
gi|345386674|gb|EGX16507.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_S1191]
gi|345392356|gb|EGX22137.1| signal transduction histidine-protein kinase barA [Escherichia coli
TX1999]
gi|349739240|gb|AEQ13946.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O7:K1 str. CE10]
gi|354862614|gb|EHF23052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C236-11]
gi|354867898|gb|EHF28320.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C227-11]
gi|354868294|gb|EHF28712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 04-8351]
gi|354873896|gb|EHF34273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 09-7901]
gi|354880579|gb|EHF40915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-3677]
gi|354888086|gb|EHF48348.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4404]
gi|354892321|gb|EHF52530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4522]
gi|354893527|gb|EHF53730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354896330|gb|EHF56501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4623]
gi|354897707|gb|EHF57864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354911559|gb|EHF71563.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354913508|gb|EHF73498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354916465|gb|EHF76437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355421420|gb|AER85617.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i2']
gi|355426340|gb|AER90536.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i14']
gi|359333042|dbj|BAL39489.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MDS42]
gi|371602811|gb|EHN91499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
E101]
gi|371615603|gb|EHO04002.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B093]
gi|373247375|gb|EHP66821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4_1_47FAA]
gi|374360136|gb|AEZ41843.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
RM12579]
gi|375322210|gb|EHS67981.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43
str. T22]
gi|377891362|gb|EHU55814.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3B]
gi|377892277|gb|EHU56723.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3A]
gi|377904102|gb|EHU68389.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3C]
gi|377908983|gb|EHU73192.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3D]
gi|377910406|gb|EHU74594.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3E]
gi|377920127|gb|EHU84160.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3F]
gi|377924944|gb|EHU88885.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4A]
gi|377929085|gb|EHU92985.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4B]
gi|377940217|gb|EHV03967.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4D]
gi|377941040|gb|EHV04786.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4C]
gi|377946502|gb|EHV10182.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4E]
gi|377956356|gb|EHV19906.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4F]
gi|377959511|gb|EHV23007.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5A]
gi|377972950|gb|EHV36294.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5C]
gi|377974233|gb|EHV37561.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5D]
gi|377991362|gb|EHV54513.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6B]
gi|377992727|gb|EHV55872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6A]
gi|377995053|gb|EHV58173.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6C]
gi|378006136|gb|EHV69123.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6D]
gi|378008496|gb|EHV71455.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6E]
gi|378014457|gb|EHV77362.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7A]
gi|378037565|gb|EHW00092.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7E]
gi|378051660|gb|EHW13976.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8C]
gi|378059637|gb|EHW21836.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8D]
gi|378064239|gb|EHW26400.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8E]
gi|378072181|gb|EHW34244.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9A]
gi|378082392|gb|EHW44337.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9C]
gi|378088677|gb|EHW50527.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9D]
gi|378092939|gb|EHW54758.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9E]
gi|378099009|gb|EHW60734.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10A]
gi|378104582|gb|EHW66240.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10B]
gi|378109245|gb|EHW70856.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10C]
gi|378114749|gb|EHW76300.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10D]
gi|378126569|gb|EHW87963.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10E]
gi|378128578|gb|EHW89960.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11A]
gi|378129501|gb|EHW90872.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10F]
gi|378140813|gb|EHX02036.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11B]
gi|378147631|gb|EHX08778.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11D]
gi|378149143|gb|EHX10270.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11C]
gi|378156761|gb|EHX17807.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11E]
gi|378167868|gb|EHX28779.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12A]
gi|378184404|gb|EHX45040.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13A]
gi|378185762|gb|EHX46386.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12E]
gi|378198506|gb|EHX58976.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13B]
gi|378199195|gb|EHX59663.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13C]
gi|378211505|gb|EHX71843.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13E]
gi|378215391|gb|EHX75688.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC14A]
gi|378218299|gb|EHX78571.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14B]
gi|378226561|gb|EHX86747.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14C]
gi|378230137|gb|EHX90264.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14D]
gi|378235852|gb|EHX95907.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15A]
gi|378243985|gb|EHY03931.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15B]
gi|378245526|gb|EHY05463.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15C]
gi|378252996|gb|EHY12874.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15D]
gi|380347048|gb|EIA35337.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
gi|383104214|gb|AFG41723.1| Signal transduction histidine-protein kinase barA [Escherichia coli
P12b]
gi|383475682|gb|EID67636.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
gi|384380634|gb|EIE38500.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
gi|384471837|gb|EIE55905.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
gi|385155926|gb|EIF17926.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
P4]
gi|385538413|gb|EIF85275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M919]
gi|385706992|gb|EIG44024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H730]
gi|385710943|gb|EIG47915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B799]
gi|386121018|gb|EIG69636.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
4_1_40B]
gi|386146823|gb|EIG93268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0246]
gi|386149613|gb|EIH00902.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0588]
gi|386156368|gb|EIH12713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0259]
gi|386160579|gb|EIH22390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2264]
gi|386167057|gb|EIH33577.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0497]
gi|386171695|gb|EIH43734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0741]
gi|386179055|gb|EIH56534.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2608]
gi|386182389|gb|EIH65147.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0624]
gi|386218615|gb|EII35098.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0967]
gi|386223753|gb|EII46102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.3916]
gi|386228294|gb|EII55650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.3884]
gi|386236471|gb|EII68447.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.4168]
gi|386240156|gb|EII77081.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2303]
gi|386245261|gb|EII86991.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3003]
gi|386253167|gb|EIJ02857.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B41]
gi|386259197|gb|EIJ14671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
900105 (10e)]
gi|386797424|gb|AFJ30458.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
gi|388346005|gb|EIL11748.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25
str. CVM9340]
gi|388346702|gb|EIL12412.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
CVM9450]
gi|388347850|gb|EIL13499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9545]
gi|388349614|gb|EIL15082.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9534]
gi|388371350|gb|EIL34831.1| signal transduction histidine-protein kinase barA [Escherichia coli
O26:H11 str. CVM10026]
gi|388375404|gb|EIL38422.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9942]
gi|388385821|gb|EIL47487.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
gi|388390514|gb|EIL52000.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
gi|388407778|gb|EIL68141.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
gi|388408036|gb|EIL68396.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
gi|388421400|gb|EIL81016.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
gi|390640233|gb|EIN19697.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1996]
gi|390642084|gb|EIN21506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA517]
gi|390642327|gb|EIN21728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA505]
gi|390659209|gb|EIN36976.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93-001]
gi|390660301|gb|EIN38015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1985]
gi|390662480|gb|EIN40076.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1990]
gi|390676099|gb|EIN52214.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA3]
gi|390679437|gb|EIN55337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA5]
gi|390682668|gb|EIN58411.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA9]
gi|390694854|gb|EIN69410.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA10]
gi|390699653|gb|EIN73996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA15]
gi|390699816|gb|EIN74156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA14]
gi|390713413|gb|EIN86351.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA22]
gi|390720933|gb|EIN93634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA25]
gi|390722641|gb|EIN95283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA24]
gi|390726093|gb|EIN98570.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA28]
gi|390740520|gb|EIO11641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA31]
gi|390741264|gb|EIO12342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA32]
gi|390744198|gb|EIO15106.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA33]
gi|390757145|gb|EIO26634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA40]
gi|390765799|gb|EIO34949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA41]
gi|390766666|gb|EIO35781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA39]
gi|390767309|gb|EIO36392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA42]
gi|390780595|gb|EIO48295.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW06591]
gi|390788531|gb|EIO55997.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07945]
gi|390788612|gb|EIO56077.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10246]
gi|390795407|gb|EIO62691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW11039]
gi|390803778|gb|EIO70768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09098]
gi|390806119|gb|EIO73041.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09109]
gi|390814957|gb|EIO81506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10119]
gi|390824618|gb|EIO90580.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4203]
gi|390828071|gb|EIO93760.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09195]
gi|390829780|gb|EIO95374.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4196]
gi|390844859|gb|EIP08556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14313]
gi|390845150|gb|EIP08831.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14301]
gi|390849682|gb|EIP13104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4421]
gi|390860333|gb|EIP22655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4422]
gi|390869522|gb|EIP31154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4402]
gi|390877342|gb|EIP38276.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4439]
gi|390882781|gb|EIP43263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4436]
gi|390892198|gb|EIP51786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4437]
gi|390894653|gb|EIP54151.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4448]
gi|390899379|gb|EIP58627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1738]
gi|390907147|gb|EIP66016.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1734]
gi|390917874|gb|EIP76290.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1863]
gi|390919193|gb|EIP77550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1845]
gi|391248457|gb|EIQ07698.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri CCH060]
gi|391276228|gb|EIQ35001.1| signal transduction histidine-protein kinase BarA [Shigella boydii
4444-74]
gi|391279853|gb|EIQ38534.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3226-85]
gi|391293057|gb|EIQ51356.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei 4822-66]
gi|391299437|gb|EIQ57401.1| signal transduction histidine-protein kinase BarA [Shigella
dysenteriae 225-75]
gi|391304187|gb|EIQ62005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EPECa12]
gi|391311367|gb|EIQ69003.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli EPEC C342-62]
gi|394384519|gb|EJE62078.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10224]
gi|394407341|gb|EJE82203.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10021]
gi|394417135|gb|EJE90885.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10030]
gi|394421485|gb|EJE94952.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9952]
gi|394423235|gb|EJE96499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9455]
gi|397784145|gb|EJK95001.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_O31]
gi|404337681|gb|EJZ64132.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 1485-80]
gi|406776407|gb|AFS55831.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052976|gb|AFS73027.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2011C-3493]
gi|407066695|gb|AFS87742.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408063788|gb|EKG98277.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA7]
gi|408065699|gb|EKH00169.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK920]
gi|408068896|gb|EKH03310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA34]
gi|408081542|gb|EKH15549.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA507]
gi|408096652|gb|EKH29587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1999]
gi|408103042|gb|EKH35427.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1997]
gi|408107798|gb|EKH39868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE1487]
gi|408114265|gb|EKH45827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE037]
gi|408120244|gb|EKH51268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK2001]
gi|408126518|gb|EKH57078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA4]
gi|408136590|gb|EKH66329.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA23]
gi|408139017|gb|EKH68651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA49]
gi|408145320|gb|EKH74498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA45]
gi|408153913|gb|EKH82283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TT12B]
gi|408158859|gb|EKH86962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
MA6]
gi|408162772|gb|EKH90659.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5905]
gi|408172251|gb|EKH99328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
CB7326]
gi|408178874|gb|EKI05566.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC96038]
gi|408182067|gb|EKI08601.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5412]
gi|408200143|gb|EKI25331.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ARS4.2123]
gi|408200665|gb|EKI25841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW00353]
gi|408212150|gb|EKI36683.1| signal transduction histidine-protein kinase BarA [Escherichia coli
07798]
gi|408212422|gb|EKI36948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3006]
gi|408216170|gb|EKI40503.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA38]
gi|408225968|gb|EKI49628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1735]
gi|408227314|gb|EKI50911.1| signal transduction histidine-protein kinase BarA [Escherichia coli
N1]
gi|408237171|gb|EKI60036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1736]
gi|408241161|gb|EKI63810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1737]
gi|408245765|gb|EKI68117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1846]
gi|408254274|gb|EKI75804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1847]
gi|408258055|gb|EKI79343.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1848]
gi|408264624|gb|EKI85421.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1849]
gi|408273088|gb|EKI93154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1850]
gi|408276129|gb|EKI96062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1856]
gi|408284895|gb|EKJ03949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1862]
gi|408290079|gb|EKJ08816.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1864]
gi|408295177|gb|EKJ13514.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1865]
gi|408306582|gb|EKJ23948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1868]
gi|408306929|gb|EKJ24291.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1866]
gi|408317714|gb|EKJ33944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1869]
gi|408323772|gb|EKJ39733.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1870]
gi|408325471|gb|EKJ41346.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE098]
gi|408335590|gb|EKJ50428.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK523]
gi|408342469|gb|EKJ56896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1288]
gi|408345283|gb|EKJ59625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1304]
gi|408548046|gb|EKK25431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4870]
gi|408548524|gb|EKK25908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.2239]
gi|408549520|gb|EKK26880.1| signal transduction histidine-protein kinase BarA [Escherichia coli
6.0172]
gi|408565841|gb|EKK41922.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0566]
gi|408567143|gb|EKK43203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0586]
gi|408577841|gb|EKK53391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0833]
gi|408580590|gb|EKK55994.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.2524]
gi|408590684|gb|EKK65158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0869]
gi|408595385|gb|EKK69620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.0221]
gi|408600144|gb|EKK74003.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0416]
gi|421933984|gb|EKT91762.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421934999|gb|EKT92722.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CFSAN001630]
gi|427203307|gb|EKV73612.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1042]
gi|427205489|gb|EKV75738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
89.0511]
gi|427207034|gb|EKV77212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1467]
gi|427220126|gb|EKV89070.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0091]
gi|427223281|gb|EKV92040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.2281]
gi|427227217|gb|EKV95797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0039]
gi|427240440|gb|EKW07893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0056]
gi|427240954|gb|EKW08400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0055]
gi|427259440|gb|EKW25478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0183]
gi|427260266|gb|EKW26257.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0943]
gi|427278034|gb|EKW42530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0427]
gi|427282211|gb|EKW46484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0939]
gi|427290717|gb|EKW54175.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0932]
gi|427297718|gb|EKW60742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0107]
gi|427299756|gb|EKW62725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0003]
gi|427311257|gb|EKW73470.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.1742]
gi|427313962|gb|EKW76033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0007]
gi|427318442|gb|EKW80309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0672]
gi|427327059|gb|EKW88460.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0678]
gi|427328119|gb|EKW89487.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0713]
gi|429252638|gb|EKY37156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0109]
gi|429254422|gb|EKY38839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0010]
gi|429347455|gb|EKY84228.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02092]
gi|429358491|gb|EKY95160.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02030]
gi|429360236|gb|EKY96895.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429360547|gb|EKY97205.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02093]
gi|429363915|gb|EKZ00540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02318]
gi|429375470|gb|EKZ12004.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02281]
gi|429377878|gb|EKZ14393.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03439]
gi|429389523|gb|EKZ25943.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02913]
gi|429393357|gb|EKZ29752.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03943]
gi|429403361|gb|EKZ39645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-04080]
gi|429405848|gb|EKZ42112.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429408729|gb|EKZ44964.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413165|gb|EKZ49354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429415894|gb|EKZ52052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429419575|gb|EKZ55710.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429431054|gb|EKZ67104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429435090|gb|EKZ71110.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429437316|gb|EKZ73323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429442433|gb|EKZ78390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429446583|gb|EKZ82511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429450195|gb|EKZ86091.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429455952|gb|EKZ91799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430873601|gb|ELB97167.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE2]
gi|430892539|gb|ELC15030.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE10]
gi|430897420|gb|ELC19625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE12]
gi|430904999|gb|ELC26680.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE16]
gi|430906226|gb|ELC27827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE15]
gi|430917503|gb|ELC38550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE21]
gi|430924508|gb|ELC45224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE26]
gi|430934367|gb|ELC54734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE39]
gi|430937515|gb|ELC57769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE44]
gi|430951164|gb|ELC70384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE187]
gi|430953840|gb|ELC72727.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE181]
gi|430961637|gb|ELC79644.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE188]
gi|430981090|gb|ELC97830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE201]
gi|430987748|gb|ELD04271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE204]
gi|431003133|gb|ELD18619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE208]
gi|431005479|gb|ELD20501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE210]
gi|431022493|gb|ELD35754.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE214]
gi|431037060|gb|ELD48048.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE220]
gi|431040423|gb|ELD50958.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE224]
gi|431049269|gb|ELD59231.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE228]
gi|431050612|gb|ELD60357.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE230]
gi|431062041|gb|ELD71323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE233]
gi|431068035|gb|ELD76541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE235]
gi|431091673|gb|ELD97383.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE51]
gi|431098918|gb|ELE04224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE53]
gi|431113794|gb|ELE17443.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE56]
gi|431126361|gb|ELE28708.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE60]
gi|431136705|gb|ELE38561.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE67]
gi|431139789|gb|ELE41567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE66]
gi|431146949|gb|ELE48372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE72]
gi|431157851|gb|ELE58482.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE76]
gi|431168626|gb|ELE68864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE80]
gi|431178665|gb|ELE78572.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE86]
gi|431179784|gb|ELE79675.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE83]
gi|431189367|gb|ELE88790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE87]
gi|431189712|gb|ELE89131.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE93]
gi|431198063|gb|ELE96888.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE111]
gi|431199385|gb|ELE98137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE116]
gi|431209192|gb|ELF07303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE119]
gi|431213061|gb|ELF10980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE142]
gi|431218935|gb|ELF16359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE143]
gi|431220570|gb|ELF17903.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE156]
gi|431237647|gb|ELF32638.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE161]
gi|431242422|gb|ELF36842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE169]
gi|431261396|gb|ELF53435.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE9]
gi|431273292|gb|ELF64378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE45]
gi|431281082|gb|ELF71990.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE42]
gi|431290682|gb|ELF81217.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE43]
gi|431294964|gb|ELF85136.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE29]
gi|431306852|gb|ELF95157.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE46]
gi|431309142|gb|ELF97419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE48]
gi|431313584|gb|ELG01556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE50]
gi|431316940|gb|ELG04736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE54]
gi|431327814|gb|ELG15134.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE63]
gi|431338008|gb|ELG25095.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE78]
gi|431350505|gb|ELG37316.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE79]
gi|431353386|gb|ELG40139.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE91]
gi|431360818|gb|ELG47417.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE101]
gi|431363120|gb|ELG49693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE115]
gi|431383258|gb|ELG67382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE135]
gi|431383769|gb|ELG67892.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE136]
gi|431393935|gb|ELG77481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE141]
gi|431398319|gb|ELG81739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE144]
gi|431403604|gb|ELG86881.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE146]
gi|431409184|gb|ELG92359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE147]
gi|431415354|gb|ELG97899.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE158]
gi|431419055|gb|ELH01414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE154]
gi|431430534|gb|ELH12365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE194]
gi|431437617|gb|ELH19125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE190]
gi|431451629|gb|ELH32100.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE184]
gi|431455466|gb|ELH35821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE196]
gi|431462217|gb|ELH42434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE183]
gi|431466340|gb|ELH46415.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE197]
gi|431468548|gb|ELH48481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE203]
gi|431471699|gb|ELH51591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE202]
gi|431480379|gb|ELH60099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE207]
gi|431486960|gb|ELH66605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE209]
gi|431498281|gb|ELH77494.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE215]
gi|431503993|gb|ELH82725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE218]
gi|431507530|gb|ELH85815.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE223]
gi|431529470|gb|ELI06171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE105]
gi|431550147|gb|ELI24144.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE113]
gi|431554840|gb|ELI28716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE117]
gi|431563480|gb|ELI36692.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE120]
gi|431567870|gb|ELI40862.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE124]
gi|431568627|gb|ELI41599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE122]
gi|431580078|gb|ELI52648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE125]
gi|431581506|gb|ELI53954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE128]
gi|431600413|gb|ELI70084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE133]
gi|431603443|gb|ELI72868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE137]
gi|431608841|gb|ELI78179.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE138]
gi|431617909|gb|ELI86898.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE145]
gi|431632648|gb|ELJ00935.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE153]
gi|431643053|gb|ELJ10757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE160]
gi|431644667|gb|ELJ12321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE163]
gi|431655207|gb|ELJ22247.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE166]
gi|431658717|gb|ELJ25628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE167]
gi|431660504|gb|ELJ27376.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE168]
gi|431669521|gb|ELJ35944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE174]
gi|431676190|gb|ELJ42313.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE177]
gi|431699723|gb|ELJ64721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE82]
gi|431704357|gb|ELJ68985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE88]
gi|431714601|gb|ELJ78786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE90]
gi|431729314|gb|ELJ92949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE97]
gi|431733563|gb|ELJ96998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE99]
gi|441605694|emb|CCP97502.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441715703|emb|CCQ04506.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
Nissle 1917]
gi|444537109|gb|ELV17060.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0814]
gi|444546813|gb|ELV25479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0815]
gi|444556641|gb|ELV34038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0839]
gi|444557126|gb|ELV34489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0816]
gi|444562213|gb|ELV39289.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0848]
gi|444571909|gb|ELV48365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1753]
gi|444575459|gb|ELV51696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1775]
gi|444578422|gb|ELV54484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1793]
gi|444592035|gb|ELV67296.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA11]
gi|444592335|gb|ELV67594.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ATCC 700728]
gi|444593831|gb|ELV69036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1805]
gi|444605240|gb|ELV79882.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA13]
gi|444606024|gb|ELV80650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA19]
gi|444614594|gb|ELV88820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA2]
gi|444622251|gb|ELV96215.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA47]
gi|444623223|gb|ELV97158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA48]
gi|444628714|gb|ELW02451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA8]
gi|444637277|gb|ELW10651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
7.1982]
gi|444640079|gb|ELW13368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1781]
gi|444643837|gb|ELW16963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1762]
gi|444653528|gb|ELW26249.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA35]
gi|444658900|gb|ELW31337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4880]
gi|444662435|gb|ELW34689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0083]
gi|444669023|gb|ELW41021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0670]
gi|449316108|gb|EMD06230.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
gi|449319139|gb|EMD09195.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|420337927|ref|ZP_14839489.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-315]
gi|391259801|gb|EIQ18875.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-315]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLISALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 1610
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 344 GLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 403
G++ G++ G I K + H + E + A A K+ FLAT+SHEIRTPMN I+GM
Sbjct: 1047 GVVTGFLAMGKDITSRKAAE--HALAEARDEALRAAQVKADFLATMSHEIRTPMNAIIGM 1104
Query: 404 LALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463
LLLDT L+ Q ++A + + L+ L+N++LD +KIEA KL E + F+LR ++D
Sbjct: 1105 TGLLLDTALTKEQHEFADSVRRSSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVED 1164
Query: 464 VLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ L +E++++KG+EL V VP V+GDPGR RQI+ NLVGN++KFT G +F+ V
Sbjct: 1165 TVELLAEQAQSKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVGNAIKFTAAGEVFLHV 1223
Score = 154 bits (389), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 194/398 (48%), Gaps = 51/398 (12%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L ++DTGIGIP + Q R+F F+QADSST+R +GGTG+GL+I + LV M GQI S
Sbjct: 1234 LRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVES 1293
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE-KPVRAAVTQYHL 722
GSTF FTA F + + + S +G + ++VD VR A+ Q L
Sbjct: 1294 HSGQGSTFWFTAQFPETT------LATAPSPFSWSRLRGRRILLVDHCDTVRQAMRQ-EL 1346
Query: 723 NRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782
G+ ++ S +A A+ +S++ F D+ L+E +S D A LL P
Sbjct: 1347 TSHGMNCTVAQSGPEAVELARTA-AASQNPF--DLALIE--LHLSDMDGFETAALLKQGP 1401
Query: 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA 842
+LI+L T + + A++ G D + KPLR + + CL +L+ E+
Sbjct: 1402 ATAGI---RLIILTTVGRRGDGQTARSIGI-DAYLTKPLRQAQLLECLCLLLAPEST--- 1454
Query: 843 GRGVPNGSSFHQGLLR----------GKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
G P + + R ++L+ +DN VN+ VA L+K G V+ A +
Sbjct: 1455 -AGTPPNAEPPALITRHTLSESQAGPKPRLLLAEDNPVNQKVACKMLEKLGYRVDVAGNG 1513
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ A+ + + MD QMPE+DGFEAT IR+ME ++
Sbjct: 1514 QEAVAAHERSR-YPLILMDCQMPEVDGFEATALIRKMEGRSA------------------ 1554
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
H PI+AMTA+ + + CL GMD Y++KP + L
Sbjct: 1555 -HTPIVAMTANAMQGDRERCLAAGMDDYIAKPVRPKEL 1591
>gi|167035866|ref|YP_001671097.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida GB-1]
gi|166862354|gb|ABZ00762.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida GB-1]
Length = 923
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 128/209 (61%), Gaps = 17/209 (8%)
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAE----AADV- 380
+ STPW ++ +L+G + + + V + +M E + A A+D
Sbjct: 345 RTSTPW----------LLCILLGLTVVSGLLLNLAVSERLRRMSEERFSASRALAASDAE 394
Query: 381 --AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVL 438
AK++FLA +SHEIRTPMNG+LGM LLL T LS QRDY QT G L+ LINE+L
Sbjct: 395 INAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEIL 454
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +K+E+R++EL+ V F+L A+++D L++F K+ + IEL F +VP + GDP R
Sbjct: 455 DISKLESRQIELDDVQFDLNALIEDCLNIFRAKAEQQNIELISFTQPQVPRVISGDPTRL 514
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAER 527
RQ +++L+ N++K T++G I + V L +R
Sbjct: 515 RQALSSLLENALKNTDQGEILLVVALDQR 543
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/422 (22%), Positives = 179/422 (42%), Gaps = 52/422 (12%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+ ++A + E L + V+D+G +P + ++ + + + S + G +GL I+
Sbjct: 534 ILLVVALDQRGELPRLRIAVQDSGEPLPAADRDALLQAELHSHHFLSSNKLGGHLGLVIA 593
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L+ LM+G+ S +G+T T + ++Q + DL + + +VV
Sbjct: 594 KQLIGLMQGEFGIKSSTGMGNTLWLTLPLDPSR------LEQPPA-DLDSPLRDARVLVV 646
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WIS 767
D+ V + G+ V S K+A + + D F D +L++++ ++
Sbjct: 647 DDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTK-AHLRDYF--DAVLLDQNMPGMT 703
Query: 768 G--------EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMK 819
G ED N + L+++ T IS ++ K
Sbjct: 704 GMQLAAKIKEDPSLNHDI--------------LVVMLTGISNAPSKVIARNAGVKRILAK 749
Query: 820 PLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
P+ + L + L+ + QA G L ++LV +DN ++ V G L
Sbjct: 750 PVAGYTLKTTLAEELAQRGREQAVPASLPGIPQALDLPGDFRVLVAEDNSISTKVIRGML 809
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
K + A + + AL +++ H +D MD +MP +DGF AT+++R E+ Q
Sbjct: 810 GKLNLEPDTACNGEEALQAMKAQH-YDLVLMDCEMPVLDGFSATQQLRAWETANQRQ--- 865
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
P++A+TA ++ + GMDG+++KP E L REL +++
Sbjct: 866 --------------RTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQL-RELIQYWA 910
Query: 1000 SK 1001
++
Sbjct: 911 NQ 912
>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|419182121|ref|ZP_13725732.1| HAMP domain protein [Escherichia coli DEC7C]
gi|378022241|gb|EHV84928.1| HAMP domain protein [Escherichia coli DEC7C]
Length = 734
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 99 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 158
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 159 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 218
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 219 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 266
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 267 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 298
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 299 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 328
Query: 672 SF 673
F
Sbjct: 329 WF 330
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 486 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 543
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 544 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 583
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 584 LAKPIEEERLHNLLLRY---KPGSG 605
>gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
Length = 723
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 111/156 (71%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++QE AE+A+ AKS FLA +SHEIRTPMNG++GM +L DTDL+ QR Y T +
Sbjct: 201 QLQEAHSIAESANRAKSAFLANMSHEIRTPMNGVVGMADVLRDTDLTEDQRLYVDTIKNS 260
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G+AL+ +IN+VLD +KIEA+KL+L F+L + +V+ L +R KG+E+A+
Sbjct: 261 GEALLVIINDVLDYSKIEAKKLDLHPEPFDLERAIQEVIMLLQPLAREKGLEMALDYDLF 320
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P ++GDPGR RQ++TNL+GN+VKFT GH+ V+V
Sbjct: 321 MPTTLVGDPGRIRQVLTNLLGNAVKFTSDGHVLVRV 356
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 180/396 (45%), Gaps = 59/396 (14%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + + +EDTGIGI + +F F Q ++ +R + GTG+GL+IS+ L+++M G I
Sbjct: 367 VQVNIAIEDTGIGIAPDMVDHIFGEFNQVENERNRKFDGTGLGLAISQRLIQMMEGDIWV 426
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAV-VVDEKPVRAAVTQY 720
S Q GS F F E PP + L+ + VV+ + V ++
Sbjct: 427 TSEEQAGSCFGFKLPLEAHGEITTPH---------PPLPRALRHIMVVEGETVNRSIVLK 477
Query: 721 HLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780
L +LG+ V S +DA L +D D++L + I E GF+
Sbjct: 478 QLEQLGLKVTCCGSAQDA-------LCQIDDSV--DLVLTDH---IMPEMDGFDLAAALR 525
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
V +I++++N S + D ++ TV+ KP+ S + A L V
Sbjct: 526 AAENEV----AIIVVSSNTSLADNDPSR--DLVSTVLKKPIPRSDLFAQLSAVKIVP--- 576
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
PN S LR +IL +DN N++V + ++ + A + + A+D Q
Sbjct: 577 ------PNRSDLP---LRKMRILAAEDNKTNQLVFSKMIQHLDIDLMIANNGQEAVDMYQ 627
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
S + D FMDI MP+MDG EA+ IR++E GT + PI+A+
Sbjct: 628 S-YRPDMIFMDISMPKMDGKEASMAIRKIE---------------GTTG---IRCPIVAL 668
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
TA + L G+D Y++KP ++++ ++A+
Sbjct: 669 TAHAMSGDDKNILAAGLDHYLTKPLRKQDIISQIAQ 704
>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E22]
gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E22]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + + L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKENLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|432490591|ref|ZP_19732456.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE213]
gi|432840617|ref|ZP_20074078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE140]
gi|433204514|ref|ZP_20388273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE95]
gi|431019139|gb|ELD32553.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE213]
gi|431387761|gb|ELG71581.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE140]
gi|431718667|gb|ELJ82738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE95]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGVLLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EDL933]
gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia
coli O157:H7 str. EDL933]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|417237135|ref|ZP_12035102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
9.0111]
gi|386214220|gb|EII24643.1| signal transduction histidine-protein kinase BarA [Escherichia coli
9.0111]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|417228679|ref|ZP_12030437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0959]
gi|386208014|gb|EII12519.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0959]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
Length = 998
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 188/397 (47%), Gaps = 53/397 (13%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI +F PF+QAD S +R YGGTG+GLSI K LVELM G I S+P
Sbjct: 511 VADTGIGITAPVIALLFNPFVQADGSVTRKYGGTGLGLSICKRLVELMGGHIGVDSKPGA 570
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF F E + S ++ P +VV ++A + ++ G+
Sbjct: 571 GSTFWF--------ELPVTVVAGSAAKVALPEHARTAVLVVQPHRIQAHILSAYMKSWGM 622
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
V + S + A + + L S Q ++L++ + + L P
Sbjct: 623 PVLVVDSAEQALAQQQRHLAGS----QKQVVLIDS-ALPDMPAAALRSALAVSAPES--- 674
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQA----- 842
+ ILLA + + E +A+A GF + + +PLR S + L L +RQ+
Sbjct: 675 ---RFILLADSDAARE--QAEAQGFHAS-LQQPLRQSTLFDALSNAL---ERRQSVVPVA 725
Query: 843 --GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
R P + + + +L+V+DN +N+ +A L + G V+ A++ + ALD L
Sbjct: 726 VERRDAPAPVNVARERSDHRLLLLVEDNLINQKLAVHQLTQMGYAVDVASNGQEALDALA 785
Query: 901 S-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+ P+ MD QMP MDGFEATRRIRQ E GG H+ I+A
Sbjct: 786 TVPYAL--VLMDCQMPVMDGFEATRRIRQSEQA------GGG------------HIQIVA 825
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996
MTA+ + + CL+ GMD Y+SKP E L LA+
Sbjct: 826 MTANAMQGDRERCLEVGMDDYLSKPIRRELLAEMLAQ 862
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 103/166 (62%)
Query: 362 EDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQ 421
ED ++++ K+ AE A+ A+ FL+TVSHEIRTPMN ++GM LL +T L + Q ++
Sbjct: 335 EDVEVELKKAKIVAEQANAARGAFLSTVSHEIRTPMNAVIGMSGLLRETALDAQQEEFTV 394
Query: 422 TAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAV 481
+ AL+ +I+E+LD ++I+A KL +EA +L ++++ + K+R +G+ L
Sbjct: 395 AIEDSANALMVIIDEILDFSRIDAGKLTIEATDCHLLSLVEGSADALAVKARQQGLRLLC 454
Query: 482 FVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
FV +P V D GR RQ++ NL+GN+VKFT G + + V R
Sbjct: 455 FVEPDLPVTVSVDAGRLRQVLLNLIGNAVKFTPAGEVRILVRQVNR 500
>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
E2348/69]
gi|417757042|ref|ZP_12405113.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2B]
gi|418998132|ref|ZP_13545722.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1A]
gi|419003361|ref|ZP_13550880.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1B]
gi|419008920|ref|ZP_13556344.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1C]
gi|419014706|ref|ZP_13562049.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC1D]
gi|419019732|ref|ZP_13567036.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1E]
gi|419025124|ref|ZP_13572347.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC2A]
gi|419035929|ref|ZP_13583012.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2D]
gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O127:H6 str. E2348/69]
gi|377842082|gb|EHU07137.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1A]
gi|377842275|gb|EHU07329.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1C]
gi|377845853|gb|EHU10872.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1B]
gi|377855388|gb|EHU20259.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC1D]
gi|377858892|gb|EHU23730.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1E]
gi|377862482|gb|EHU27294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC2A]
gi|377872420|gb|EHU37066.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2B]
gi|377878447|gb|EHU43034.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2D]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|432450921|ref|ZP_19693180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE193]
gi|433034604|ref|ZP_20222308.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE112]
gi|430978655|gb|ELC95459.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE193]
gi|431548883|gb|ELI22975.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE112]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|403528403|ref|YP_006663290.1| hybrid signal transduction histidine kinase J [Arthrobacter sp.
Rue61a]
gi|403230830|gb|AFR30252.1| hybrid signal transduction histidine kinase J [Arthrobacter sp.
Rue61a]
Length = 1153
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 185/400 (46%), Gaps = 47/400 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI +R+F F QAD+ST+R YGGTG+GL+IS+ L E+M G+I S P V
Sbjct: 640 VRDTGIGISAENHQRLFESFAQADASTTRRYGGTGLGLAISRRLTEVMGGKIGLDSEPGV 699
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F F +++E LP G + +VVD+ V L G+
Sbjct: 700 GSRFWFDLELPLGP-------AATETESLPATLAGRRVLVVDDNATNRLVLDTQLASWGM 752
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
+ S+ DA+S ++ DI +V D + D A+ + + NG
Sbjct: 753 ---VPVSVADAASALDEYRAAASSSHPYDIAVV--DMCMPDTDGLQLARNIKNESNGS-- 805
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
P +ILL + + + D AG + KP+R+S + L +VL+T+ G P
Sbjct: 806 GGPGIILLTSTMQVERSDLTSAG--IREYLTKPVRSSELYNRLLRVLATKTT-----GAP 858
Query: 848 NGSSFHQ------GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ + + + R K+LV +DN VN++VA G + G V + A+ S
Sbjct: 859 SAPAINHPVETADPVPRLGKLLVAEDNEVNQLVARGMANRLGYEVHIVDDGEQAVSAALS 918
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+ A MD MP MDGF+AT+ IR NG S+ +PI+AMT
Sbjct: 919 -GTYAAVLMDCHMPVMDGFDATKAIRA---------RNGHSA----------RIPIIAMT 958
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
A + + C GMD Y+SKP + L LA++ +
Sbjct: 959 AGALDEDRERCFAAGMDDYISKPVDLAKLAEVLARWVPQQ 998
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 99/143 (69%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLAT+SHEIRTP+N ++G+ +L++DT LS QR YAQ + G+ L+ LIN++LD +
Sbjct: 478 KSEFLATMSHEIRTPLNAVIGLTSLMMDTPLSEGQRQYAQGVKGAGEVLLTLINDILDFS 537
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA K++L+ F+ R ++++V L E ++ K +EL + VP ++GD GR RQI
Sbjct: 538 KLEAGKVDLDINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQI 597
Query: 502 ITNLVGNSVKFTERGHIFVKVHL 524
+ NL N+VKFT G + V+V +
Sbjct: 598 LLNLSSNAVKFTPDGEVEVQVSV 620
>gi|343516482|ref|ZP_08753517.1| PAS domain protein [Vibrio sp. N418]
gi|342796067|gb|EGU31762.1| PAS domain protein [Vibrio sp. N418]
Length = 1814
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 195/398 (48%), Gaps = 42/398 (10%)
Query: 607 CVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666
V DTGIG+ R+F F QAD+ST+R YGGTG+GL+ISK L E+M G I S
Sbjct: 1148 SVSDTGIGMTEEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWVESESG 1207
Query: 667 VGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLG 726
GSTF FTA FG E + + P K + ++VD+ + + L L
Sbjct: 1208 QGSTFFFTAQFGLSSEIPQQPVLA------PESMKEVSILIVDD----SVAAREILFSLC 1257
Query: 727 IMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVE-KDCWISGEDSGFNAQLLDWKPNG 784
+K ++ + + + A + +E+ Q D+IL + K + G G +L+ +
Sbjct: 1258 QSLKFNADVASSGAEALEKIRHAENNEQHFDVILSDWKMPQMDGIALGQQIELI--HQSK 1315
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE---NKRQ 841
+ LP +++ T KD+ + G + KP+ +S + L +V++ E NK
Sbjct: 1316 EIATLPHFVMV-TAYDKDDMLANRQGVNIVASMTKPVSSSTLLDTLSRVMTKEGITNKTN 1374
Query: 842 AGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ +S QG + G +IL+V+DN +N+ +A L+ G V A + + A+D L
Sbjct: 1375 TSNKL--DTSIAQG-IAGARILLVEDNAINQEIATELLQMVGMDVTTANNGQEAVD-LVG 1430
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
FD MDIQMP MDG++AT+ IR T + D+ LPI+AMT
Sbjct: 1431 SQDFDLVLMDIQMPVMDGYQATQVIR------------------NTGQYDD--LPIIAMT 1470
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
A+ + ++CL GM+ ++ KP +++ L + +
Sbjct: 1471 ANAMSGDKEKCLAAGMNDHLPKPINPNQVFQALVDWIE 1508
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 127/200 (63%), Gaps = 8/200 (4%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K +AE A AKS FLA +SHEIRTPMN I+GM L + TDL+ Q DY Q ++L+
Sbjct: 983 KQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQTDLNKKQSDYVNKIQTSAESLL 1042
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
+IN++LD +KIEA KL+LE F+L + +D+++ + S++++ K +EL V + ++P +
Sbjct: 1043 GIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVVSQRTQEKDLELLVDLDPQLPTHL 1102
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK---DETLLNGGTEEGV 548
+GDP R QI+ NL N++KFT++G I VK L E++ K +A+ +T + G TEE +
Sbjct: 1103 IGDPLRLGQILLNLANNAIKFTDQGEIIVKAELIEQSDDKLEARFSVSDTGI-GMTEEQM 1161
Query: 549 CRSGTGQFNTLSGLEAADGR 568
R F + S +A+ R
Sbjct: 1162 AR----LFQSFSQADASTTR 1177
>gi|428997148|ref|ZP_19065746.1| signal transduction histidine-protein kinase BarA [Escherichia coli
94.0618]
gi|427244665|gb|EKW11978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
94.0618]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|408417737|ref|YP_006759151.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
gi|405104950|emb|CCK78447.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
Length = 971
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 109/154 (70%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K +AE KSQFLA +SHEIRTPMNG+LGM LLL T LS Q YA+T Q G
Sbjct: 290 LEKAKEQAEEVSRIKSQFLANMSHEIRTPMNGVLGMTELLLTTRLSENQHRYAETIQNSG 349
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
++L+ +IN++LD +KIEA KLELE + FNL +++DV L + ++ +K +EL V +
Sbjct: 350 ESLLEIINDILDFSKIEAGKLELEMIDFNLEQLIEDVSQLLASQAHSKRLELVVAIKRGT 409
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK 521
++ GDP R RQ++TNL+GN++KFTE+G I +K
Sbjct: 410 RIYLKGDPTRLRQVLTNLIGNAIKFTEKGEIVIK 443
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 185/390 (47%), Gaps = 35/390 (8%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L + ++DTG+GI + R+F F Q D ST+R YGGTG+GL+IS+ LV LM G +
Sbjct: 454 VNLHLSIKDTGVGINPQDRIRLFKAFSQLDGSTTRKYGGTGLGLTISRELVSLMGGVLKC 513
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S P GS F FT K +E Q KGLK +++D+ P + +
Sbjct: 514 DSSPGRGSDFFFTLPMRKNREN-----PQKTGLINNDTLKGLKVLIIDDNPTNLEILEGQ 568
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA-QLLDW 780
+ +K SS++ A K + E+ D++L++ + + GF + +
Sbjct: 569 IA--CFCMKFDSSLRGAEGLKKLQIAQQEN-VPFDLVLLDMNM---PDMDGFEVIRRIKA 622
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKR 840
P+ K P +I+L + E KA G + + KP+R S + L +VLS K
Sbjct: 623 APD---LKKPSIIMLTSVWISGEDQKAMHSGI-NAYLTKPVRQSDLQNSLLKVLSQTLKG 678
Query: 841 QAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ + V +S + ILV +DN N+ V G L+KFG V A + A++ +
Sbjct: 679 ERFQSVTRQTSEKEIKPFDLHILVAEDNLTNQEVTMGMLRKFGCRVSLAVNGSQAVE-IF 737
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
D MD QMPEMDG++A IR+ E N + PI+A+
Sbjct: 738 LKELPDLVLMDCQMPEMDGYQAAGEIRKHEKALN------------------IRTPIVAL 779
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENL 990
TA + ++CL GMD Y+SKPF+ E L
Sbjct: 780 TAHALEGDKEKCLAAGMDDYLSKPFKSEML 809
>gi|394989866|ref|ZP_10382699.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
gi|393791366|dbj|GAB72338.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
Length = 1650
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 125/197 (63%), Gaps = 7/197 (3%)
Query: 339 FLFVIGLLVGYILYGAAIHIVKVEDDFHKMQ-------ELKVRAEAADVAKSQFLATVSH 391
+L IG LV + G + ++ V D + E + AEAA+ AKS+FLA +SH
Sbjct: 1005 WLLSIGKLVEWDAQGQPLRMLGVHFDITDRKRNEAAQIEARQAAEAANRAKSEFLANMSH 1064
Query: 392 EIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451
EIRTPMN ILG+ L+LDT+L+ Q+D+ + ++L+ ++N++LD +KIEA + +E
Sbjct: 1065 EIRTPMNAILGLTQLVLDTELTHHQQDFLKKTHASARSLLGILNDILDFSKIEAGHMSIE 1124
Query: 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK 511
V F+L+ L+ V LFS + K +EL + ++ VP +LGDP R Q++TNLV N++K
Sbjct: 1125 QVPFHLQESLEQVADLFSARIEEKKLELILEIAPDVPAEILGDPLRLSQVLTNLVSNAIK 1184
Query: 512 FTERGHIFVKVHLAERT 528
FTERG I +KV +AE T
Sbjct: 1185 FTERGEIHIKVEVAEHT 1201
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 21/156 (13%)
Query: 845 GVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHC 904
G P + L+G ++L+V+DN +NR++AA L++ G ++ A A++++++
Sbjct: 1296 GAPADTVASPQGLQGVRVLLVEDNAINRLMAAEFLERRGVSLTLAEHGGEAVERVKT-ET 1354
Query: 905 FDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
FDA MD+ MP MDG EA R IR++ G S LPI+AMTA V
Sbjct: 1355 FDAVLMDLHMPIMDGLEAARLIRELPQ---------GKS-----------LPIIAMTAAV 1394
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ D+C GM +++KP + E++ R L K+ +
Sbjct: 1395 LQEDRDQCAAVGMVDFIAKPIDPEDMIRVLLKWVTT 1430
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 121/255 (47%), Gaps = 21/255 (8%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTGIG+ ER+F F QADSST+R YGGTG+GL+I K LVELM G+IS S
Sbjct: 1207 LRFSVRDTGIGLSSGQAERLFQAFTQADSSTTRKYGGTGLGLAICKQLVELMGGEISVSS 1266
Query: 664 RPQVGSTFSFTAVFGKCKEY-VFEDIK----QSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
GS F FT G + + + + + P G +G++ ++V++ + +
Sbjct: 1267 VEGQGSAFIFTIQAGVAPSHNTVQPLSLAGAPADTVASPQGLQGVRVLLVEDNAINRLMA 1326
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778
L R G+ + ++ +A K + F D +L+ D + D A+L+
Sbjct: 1327 AEFLERRGVSLTLAEHGGEAVERVKT------ETF--DAVLM--DLHMPIMDGLEAARLI 1376
Query: 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS-MIAACLQQVLS-T 836
P G LP + + A + +D D+ A G D I KP+ MI L+ V + +
Sbjct: 1377 RELPQGK--SLPIIAMTAAVLQEDR-DQCAAVGMVD-FIAKPIDPEDMIRVLLKWVTTGS 1432
Query: 837 ENKRQAGRGVPNGSS 851
+ R++ V S
Sbjct: 1433 QPSRESAESVIESGS 1447
>gi|393768134|ref|ZP_10356676.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392726527|gb|EIZ83850.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 678
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 142/232 (61%), Gaps = 20/232 (8%)
Query: 299 DMSLLHESELDFG-DSFRKHKMICRYHQKASTPWTALTTAFFLFVIGLLVGYILYGAAIH 357
D+ +L SE++ G D R+ + R W F FV + +G A+H
Sbjct: 96 DLEILERSEIEVGEDGVRRMEAQIR-SVDGQVRW-------FAFV----EMPVAHGDAMH 143
Query: 358 IVKVEDDF-HKMQELKVR------AEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
++ D +++ L+ R AEAA VAKS+FLATVSHE+RTP+NGILGM L+L T
Sbjct: 144 WLRAGRDVTARVEALRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGT 203
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
+L QR Y + + G+AL+ LI+ VLD ++IEA +L+L A F+L A+ + V+ L +
Sbjct: 204 NLDLEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALAESVVELLAP 263
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
++++KGIE+A+ V++ P ++GD R RQI+ NL GN++KFTERG + V +
Sbjct: 264 RAQDKGIEIALDVTESFPRGLVGDADRVRQILINLAGNAIKFTERGGVGVSL 315
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 180/396 (45%), Gaps = 64/396 (16%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+GG E VTL V DTG GIP +F F Q D S SR + GTG+GL+I++ LV M
Sbjct: 322 DGGGE-VTL--AVSDTGSGIPEDRLPILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRM 378
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGFKGLKAVVVDEKPVR 714
G+I SR GSTF + + +++ P P +G + ++V + P +
Sbjct: 379 GGRIEADSRVGRGSTFRVV--------LPLPEAEGAQTGPAPLPRLEGRRCLIVADSPYQ 430
Query: 715 AAVTQYHLNRLGIMVKMSSSIKDA----SSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
A L+R G + +++D S A + + + D+ D ++ + +
Sbjct: 431 APYLARSLSRAGAATVIVGTLEDGLDALSGAAFDAVLA--DRALGDAVV--RQIADAARG 486
Query: 771 SGFNAQLLDWKP-NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA-SMIAA 828
G + L+ P + F P A GF D ++KP+RA S+
Sbjct: 487 CGIRSSLVLLSPFDRRGFGAPG-----------------AAGF-DGYLIKPVRARSLFER 528
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
L ++ E+ +P + G G ++L+ +DN +N ++A AL++ GA V
Sbjct: 529 LLAPPVAVESAT-----IPAPAPARTGT--GLRVLLAEDNPINALLATRALERLGAEVVH 581
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A AL++LQS FD +D++MP +DG E RRIR E+ +GT
Sbjct: 582 AVDGVEALERLQSSGPFDLALIDVRMPRLDGHETARRIRAAEAAG-----------EGT- 629
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984
LHL +A+TA+ A G DG+++KP
Sbjct: 630 ---RLHL--VALTANAGRADEIAARAAGFDGFLAKP 660
>gi|366159778|ref|ZP_09459640.1| hybrid sensory histidine kinase BarA [Escherichia sp. TW09308]
gi|432373355|ref|ZP_19616392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE11]
gi|430894862|gb|ELC17146.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE11]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASI---SRRHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|415811652|ref|ZP_11503965.1| signal transduction histidine-protein kinase barA [Escherichia coli
LT-68]
gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
LT-68]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQRQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str.
8401]
gi|424838938|ref|ZP_18263575.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5a str.
M90T]
gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401]
gi|383467990|gb|EID63011.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5a str.
M90T]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQRQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50]
Length = 583
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 119 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 178
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 179 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 238
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 239 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 286
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 287 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 318
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 319 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 348
Query: 672 SF 673
F
Sbjct: 349 WF 350
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 506 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 563
Query: 921 EATRRIRQM 929
A I Q+
Sbjct: 564 RACELIHQL 572
>gi|422959542|ref|ZP_16971177.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H494]
gi|371595093|gb|EHN83946.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H494]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELAPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|417713878|ref|ZP_12362841.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-272]
gi|417718504|ref|ZP_12367398.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-227]
gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-272]
gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-227]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASI---SRRHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQRQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|428771931|ref|YP_007163719.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686210|gb|AFZ46070.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 894
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 137/479 (28%), Positives = 216/479 (45%), Gaps = 102/479 (21%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
++E + AE+A+ AKS FLAT+SHEIRTPMNGI+GM LL T L+ Q+DY +T G
Sbjct: 497 LEEARKEAESANRAKSAFLATMSHEIRTPMNGIMGMADLLCHTPLNKEQKDYVKTINQSG 556
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
L+ +IN++LD AKIEA K+ELE FNL +++VL L
Sbjct: 557 SLLLTIINDILDLAKIEAGKIELEKKPFNLHQCIEEVLKLMR------------------ 598
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEG 547
N + ++K I++K HL + + + ++ G
Sbjct: 599 ---------------ANAINKNIKL-----IYIKNHLIPADFIGDINRLKQIILNLVSNG 638
Query: 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607
+ + G+ AD R D F H+I +
Sbjct: 639 IKFTEKGEVQV-----KADARLCPDGF-HVIQ--------------------------IA 666
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
++DTGIGIP +R+F PF Q D + +R YGGTG+GL IS+ + LM G+I+F +
Sbjct: 667 IKDTGIGIPTDKCDRLFKPFSQVDGTNTRKYGGTGLGLVISQKIAHLMGGKITFKTEIAQ 726
Query: 668 GSTFSFT-AVFGKCKEYVFE----------DIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
GSTF T + E + E + K K LP +K ++V++ PV
Sbjct: 727 GSTFYITIKLLALSSEEISERNLLNSNENIENKTLKISSLP-----IKILLVEDNPVNYK 781
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSE--DKFQPDIILVEKDCWISGEDSGFN 774
V + +LG + + A +GL + E ++ Q DI+ + D + D G N
Sbjct: 782 VARLMFQKLGYT-------GEKLNIAHDGLQALELINQNQYDIVFM--DLQMPNLD-GLN 831
Query: 775 AQLLDWKPNGHVFKLPKLI-LLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+ + G K P ++ + A+ +++D + G + + KP+R+ I LQ+
Sbjct: 832 TT-IKIRALGKKIKQPWIVAMTASALAEDRKNCFNVG--MNDYVSKPIRSGTIQQALQR 887
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ--SPHCFDACFMDIQMPEMD 918
KIL+V+DN VN VA +K G T E A L L+ + + +D FMD+QMP +D
Sbjct: 769 KILLVEDNPVNYKVARLMFQKLGYTGEKLNIAHDGLQALELINQNQYDIVFMDLQMPNLD 828
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G T +IR + K + I+AMTA + C GM+
Sbjct: 829 GLNTTIKIRALGKKIKQPW-------------------IVAMTASALAEDRKNCFNVGMN 869
Query: 979 GYVSKPFEEENLYRELAKFFKS 1000
YVSKP + + L +F S
Sbjct: 870 DYVSKPIRSGTIQQALQRFSNS 891
>gi|336246899|ref|YP_004590609.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
2190]
gi|444354993|ref|YP_007391137.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter
aerogenes EA1509E]
gi|334732955|gb|AEG95330.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
2190]
gi|443905823|emb|CCG33597.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter
aerogenes EA1509E]
Length = 916
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 159/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNTLDEVVTLLAHSAHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I V V +R M + + E ++
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEHGNIDVLVE--QRAMSNSRVQIEVQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV+ M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
++ VDDN N + L V S + A+++ + D MDIQMP+MDG
Sbjct: 669 VMAVDDNPANLKLIGALLDDLVQHVILCDSGQDAVEQAKQSQ-LDLILMDIQMPDMDGIR 727
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
A IR + + P++A+TA + ++ L GM+ Y+
Sbjct: 728 ACELIRHLPHQQQT--------------------PVIAVTAHALEGQREKLLAAGMNDYL 767
Query: 982 SKPFEEENLYRELAKF 997
+KP EE+ L L ++
Sbjct: 768 AKPIEEDKLSTLLLRY 783
>gi|325273610|ref|ZP_08139827.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
TJI-51]
gi|324101251|gb|EGB98880.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
TJI-51]
Length = 733
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 128/209 (61%), Gaps = 17/209 (8%)
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKV---RAEAAD--- 379
+ STPW ++ +L+G + + + V + +M E + RA AA
Sbjct: 155 RTSTPW----------LLSILLGLAVASGLLLNLAVSERLRRMSEERFSVSRALAASDAE 204
Query: 380 -VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVL 438
AK++FLA +SHEIRTPMNG+LGM LLL T LS QRDY QT G L+ LINE+L
Sbjct: 205 INAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEIL 264
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +K+E+R++EL+ V F+L A+++D L++F K+ + IEL F +VP + GDP R
Sbjct: 265 DISKLESRQIELDDVQFDLNALIEDCLNIFRAKAEQQNIELISFTQPQVPRVISGDPTRL 324
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAER 527
RQ +++L+ N++K T++G I + V L +R
Sbjct: 325 RQALSSLLENALKNTDQGEILLVVALDQR 353
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 179/422 (42%), Gaps = 52/422 (12%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+ ++A + E L + V+D+G +P + +E + + + S G +GL I+
Sbjct: 344 ILLVVALDQRGEVPRLRIAVQDSGEPLPAADREALLQAELHSHHFLSNSKLGGHLGLVIA 403
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L+ LM+G+ S +G+T T + ++Q + DL + + +VV
Sbjct: 404 KQLIGLMQGEFGIKSSTGMGNTLWLTLPLDPSR------LEQPLA-DLEGPLRDARVLVV 456
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WIS 767
D+ V + G+ V S K+A + + D F D +L++++ ++
Sbjct: 457 DDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTK-AHLRDYF--DAVLLDQNMPGMT 513
Query: 768 G--------EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMK 819
G ED N +L +++ T IS ++ K
Sbjct: 514 GMQLAAKIKEDPSLNHDIL--------------VVMLTGISNAPSKVIARNAGVKRILAK 559
Query: 820 PLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
P+ + L + L+ + QA P G L ++LV +DN ++ V G L
Sbjct: 560 PVAGYTLKTTLAEELAQRGREQALPASPPGVPQALDLPADFRVLVAEDNSISTKVIRGML 619
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
K + A++ + AL ++ H +D MD +MP +DGF ATR++R E+ Q
Sbjct: 620 GKLNLQPDTASNGEEALQAMKERH-YDLVLMDCEMPVLDGFSATRQLRAWEAANKRQ--- 675
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
P++A+TA ++ + GMDG+++KP E L REL +++
Sbjct: 676 --------------RTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQL-RELIQYWA 720
Query: 1000 SK 1001
S+
Sbjct: 721 SQ 722
>gi|170723775|ref|YP_001751463.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida W619]
gi|169761778|gb|ACA75094.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida W619]
Length = 923
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 128/209 (61%), Gaps = 17/209 (8%)
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAE----AADV- 380
+ STPW ++ +L+G + + + V + +M E + A A+D
Sbjct: 345 RTSTPW----------LLCILLGLTVASGLLLNLAVSERLRRMSEERFSASRALAASDAE 394
Query: 381 --AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVL 438
AK++FLA +SHEIRTPMNG+LGM LLL T LS QRDY QT G L+ LINE+L
Sbjct: 395 INAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEIL 454
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +K+E+R++EL+ V F+L A+++D L++F K+ + IEL F +VP + GDP R
Sbjct: 455 DISKLESRQIELDDVQFDLNALIEDCLNIFRAKAEQQNIELISFTQPQVPRVISGDPTRL 514
Query: 499 RQIITNLVGNSVKFTERGHIFVKVHLAER 527
RQ +++L+ N++K T++G I + V L +R
Sbjct: 515 RQALSSLLENALKNTDQGEILLVVALDQR 543
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 181/424 (42%), Gaps = 56/424 (13%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+ ++A + E L + V+D+G +P + +E + + + S + G +GL I+
Sbjct: 534 ILLVVALDQRGEVPRLRIAVQDSGEPLPAAEREALLQAELHSHHFLSSNKLGGHLGLIIA 593
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L+ LM+G+ S +G+T T + ++Q + DL + + +VV
Sbjct: 594 KQLIGLMQGEFGIKSSTSMGNTLWLTLPLDPSR------LEQPLA-DLDSPLRDARVLVV 646
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WIS 767
D+ V + G+ V S K+A + + D F D +L++++ ++
Sbjct: 647 DDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTK-AHLRDYF--DAVLLDQNMPGMT 703
Query: 768 G--------EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMK 819
G ED N + L+++ T IS ++ K
Sbjct: 704 GMQLAAKIKEDPSLNHDI--------------LVVMLTGISNAPSKVIARNAGVKRILAK 749
Query: 820 PLRASMIAACLQQVLSTENKRQ-AGRGVPNGSSFHQGLLRGK-KILVVDDNGVNRMVAAG 877
P+ + L + L+ + Q +P H+ L G ++LV +DN ++ V G
Sbjct: 750 PVAGYTLKTTLAEELAQRGREQTVPMPLPGTPPTHE--LPGDFRVLVAEDNSISTKVIRG 807
Query: 878 ALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937
L K + A++ + AL +++ +D MD +MP +DGF AT+++R E Q
Sbjct: 808 MLGKLNLEPDTASNGEEALQAMKA-QRYDLVLMDCEMPVLDGFSATQQLRAWEVANQRQ- 865
Query: 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA ++ + GMDG+++KP E L REL ++
Sbjct: 866 ----------------RTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQL-RELIQY 908
Query: 998 FKSK 1001
+ ++
Sbjct: 909 WANQ 912
>gi|424539769|ref|ZP_17982713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4013]
gi|425121070|ref|ZP_18522757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0569]
gi|425273949|ref|ZP_18665354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW15901]
gi|390864407|gb|EIP26515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4013]
gi|408192009|gb|EKI17597.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW15901]
gi|408566832|gb|EKK42893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0569]
Length = 909
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 274 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 333
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 334 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 393
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 394 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 441
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 442 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 473
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 474 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 503
Query: 672 SF 673
F
Sbjct: 504 WF 505
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 661 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 718
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 719 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 758
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 759 LAKPIEEERLHNLLLRY---KPGSG 780
>gi|417708850|ref|ZP_12357878.1| signal transduction histidine-protein kinase barA [Shigella
flexneri VA-6]
gi|417829043|ref|ZP_12475591.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri J1713]
gi|420321775|ref|ZP_14823600.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 2850-71]
gi|420332830|ref|ZP_14834479.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-1770]
gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella
flexneri VA-6]
gi|335574342|gb|EGM60668.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri J1713]
gi|391247082|gb|EIQ06338.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 2850-71]
gi|391248908|gb|EIQ08146.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-1770]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQRQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|384418944|ref|YP_005628304.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461857|gb|AEQ96136.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 1364
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 193/411 (46%), Gaps = 54/411 (13%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+G L+ V DTGIGI Q +F PF+QAD+STSR YGG+G+GL+IS+ L+ELM
Sbjct: 789 SGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELM 848
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S P GS F F K +Q LPP E R
Sbjct: 849 GGELEVESVPGRGSEFYFVITLEKSA----PPQEQRDLPSLPP-----------EAMPRV 893
Query: 716 AVTQYHLNRLGIMVKMSSSIK---DASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDS 771
+ H L +V++++ + DA ++ + L + E +P DI L+ D + D
Sbjct: 894 LIADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLL--DWRMPDIDG 951
Query: 772 GFNAQLLDWK--PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAAC 829
A+ + + P H +I++ T + ++ D V+ KP+ + +
Sbjct: 952 VAIAREIRARATPGPH-----PVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRL 1006
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
+Q++ ++R R +F L G +L+VDD+ +N VA L+ GA V A
Sbjct: 1007 FEQLM---DQRPGTRAA--TPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVA 1061
Query: 890 ASAKAALDKLQ-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
+ A+ L+ +P F MD+QMP +DG+EATRR+RQ+ + A+
Sbjct: 1062 HDGEQAVSTLKRAPDLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------- 1107
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
LP++A+TA ++ L GM+G+++KPF E L + F +
Sbjct: 1108 ------LPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQ 1152
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 12/182 (6%)
Query: 346 LVGYILYGAAIHIVKVEDDFHKMQELKVR-----AEAADVAKSQFLATVSHEIRTPMNGI 400
++GY+ G A+ + + K+ E ++R A++A+ +KS FLA +SHEIRTPMN I
Sbjct: 610 VIGYL--GVAVDLTE-----QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 401 LGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460
LGML LL ++L +D + L+ +IN++LD +KIEA +++LE F+L +
Sbjct: 663 LGMLYLLQRSELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQL 722
Query: 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFV 520
D++ L K +E+ V + ++LGD R Q++ NLVGN++KFTE+G + +
Sbjct: 723 FDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVL 782
Query: 521 KV 522
V
Sbjct: 783 SV 784
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 112 LDQDTFAEYTTRTAFER--PLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDE 169
+ ++ F Y+ + R P + G Y RV A + F + P R
Sbjct: 87 ISRERFTLYSRSRDYPREFPGVLGYGYIHRVAPADEDAF-----LQSARADGAPDIQRRP 141
Query: 170 YAP------VMFYQEPMS---HVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLG--- 217
AP ++ Y EP S H +D+ S R L+A +G+ ++T P L G
Sbjct: 142 LAPWDGERYIVLYFEPESSGNHPLGIDIASDPRRRAAALQAARSGEPIMTSPISLFGYRV 201
Query: 218 SHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLGQ 267
G ++ +Y+ +P T ++R+ AT+G++ PF VE +V++ LG+
Sbjct: 202 PSESGFLVLLGIYREGMP-LQTPQQRMVATSGWVYAPFSVEQIVQSALGE 250
>gi|345871554|ref|ZP_08823498.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343920212|gb|EGV30948.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1162
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 182/413 (44%), Gaps = 66/413 (15%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E L + V DTG GIP +F F QAD + +R +GGTG+GL+I++ L LM G +
Sbjct: 569 EQTMLRIQVRDTGAGIPEDRLSAIFESFSQADQTITRRHGGTGLGLAIARDLSRLMGGDL 628
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
S SR GSTF+ T V G+ E +Q P +GLK +VVD+
Sbjct: 629 SVASRLDEGSTFTATLVLGRQPE------RQQHMPTTPLDLRGLKVLVVDDNATSRE--- 679
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
I+V S + ++ A +G E +S F+ L+D
Sbjct: 680 -------ILVGQLESFQMSAQAAASG--------------EEALALMSDPAHAFDLVLMD 718
Query: 780 WKPNGHV-----------FKLPK--LILLATNISKDECDKAKAGGFADTVIMKPLRASMI 826
WK G KL K ++ + + ++++ + D + KP+ S +
Sbjct: 719 WKMPGMNGLETTRRLRADLKLDKTPVVCMVSAYAREDLMQPAERSILDAFLNKPVNQSFL 778
Query: 827 AACLQQVLSTENKRQAGRGVPNGSSFHQGL--LRGKKILVVDDNGVNRMVAAGALKKFGA 884
+ + ++ G + G GL G+++L+V+D +NR+VA L G
Sbjct: 779 FDTIMGLFGHQDAAVTGAPLQRGVQTDTGLPDFTGRRVLLVEDIEMNRLVAIEWLTSAGF 838
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
V+ + A+ + P +D MD+QMP MDG EATRRIR KA
Sbjct: 839 EVKSVENGLQAVSE-ADPARYDVILMDLQMPVMDGLEATRRIRANPEKAG---------- 887
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
+PI+AMTA + + CL GM+ YV+KP + + L+ LA++
Sbjct: 888 ----------IPIIAMTAHALKGDLERCLNAGMNDYVAKPIDPDRLFAALARW 930
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 12/185 (6%)
Query: 364 DFHKMQELKVRAEAADVA---KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYA 420
D + Q+ + EAA +A KS FLA +SHEIRTP+N ++G+ L+L T+L QRDY
Sbjct: 395 DRRQRQQAETEREAARLASEAKSGFLANMSHEIRTPLNAVMGLTDLVLRTELDQRQRDYL 454
Query: 421 QTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELA 480
A+I K+L+++IN++LD +KIEA +LELE+ F+L +L ++ +F+ + K IEL
Sbjct: 455 SKARIAAKSLLSVINDILDFSKIEAGRLELESAPFSLDEVLANLTEMFAYGAHEKEIELI 514
Query: 481 VFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVK---------VHLAERTMVK 531
V +VP ++GD R QI+ NL N++KFT+RG + V + E+TM++
Sbjct: 515 VSADAQVPRALIGDSTRIGQILINLTSNAIKFTDRGEVMVSVDLVDPPPPDLVPEQTMLR 574
Query: 532 TDAKD 536
+D
Sbjct: 575 IQVRD 579
>gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
301]
gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
2457T]
gi|384544360|ref|YP_005728423.1| Signal transduction histidine-protein kinase barA [Shigella
flexneri 2002017]
gi|415857793|ref|ZP_11532405.1| signal transduction histidine-protein kinase barA [Shigella
flexneri 2a str. 2457T]
gi|417703812|ref|ZP_12352916.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-218]
gi|417724405|ref|ZP_12373205.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-304]
gi|417729685|ref|ZP_12378378.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-671]
gi|417735268|ref|ZP_12383915.1| signal transduction histidine-protein kinase barA [Shigella
flexneri 2747-71]
gi|417739652|ref|ZP_12388227.1| signal transduction histidine-protein kinase barA [Shigella
flexneri 4343-70]
gi|417744635|ref|ZP_12393159.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 2930-71]
gi|418258049|ref|ZP_12881450.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 6603-63]
gi|420343131|ref|ZP_14844598.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-404]
gi|420374967|ref|ZP_14874891.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 1235-66]
gi|28558062|sp|P59342.1|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA
gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301]
gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella
flexneri 2002017]
gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella
flexneri 2a str. 2457T]
gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella
flexneri 4343-70]
gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-671]
gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella
flexneri 2747-71]
gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 2930-71]
gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-218]
gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella
flexneri K-304]
gi|391264341|gb|EIQ23334.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-404]
gi|391315002|gb|EIQ72537.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 1235-66]
gi|397895743|gb|EJL12168.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 6603-63]
Length = 918
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQRQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|414577554|ref|ZP_11434729.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3233-85]
gi|391283087|gb|EIQ41710.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3233-85]
Length = 908
Score = 156 bits (395), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 273 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 332
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 333 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 392
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 393 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 440
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 441 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 472
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 473 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 502
Query: 672 SF 673
F
Sbjct: 503 WF 504
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 660 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 717
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 718 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 757
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 758 LAKPIEEERLHNLLLRY---KPGSG 779
>gi|374813914|ref|ZP_09717651.1| sensory box histidine kinase/response regulator [Treponema primitia
ZAS-1]
Length = 1052
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 205/427 (48%), Gaps = 47/427 (11%)
Query: 577 LIDAEGFQSNASIINMMASNGGSEDVTLMVCVE--DTGIGIPLSAQERVFMPFMQADSST 634
L +A F I ++AS E T V +E D+GIGI + ++F F QADSS
Sbjct: 659 LSNAVKFTPEEGTIKLIASFIKEEQDTCTVKIEVIDSGIGISDEQKAKLFGSFQQADSSI 718
Query: 635 SRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE 694
SR +GGTG+GL+ISK +VE+M G I S+P GSTF FT + E+I+QS +
Sbjct: 719 SRRFGGTGLGLAISKRIVEMMGGGIWVHSKPGEGSTFGFTFEVKRG-----EEIRQSLLK 773
Query: 695 DLPPGFKGLKAVVVDEKP-VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKF 753
D L+ + VD+ P +R + +++ ++ S D + L E
Sbjct: 774 D-GVNLTNLRILAVDDDPDIRDSFSEF--------LRQFSLKGDIAIGGDEALDLIEKNG 824
Query: 754 QPDIILVEKDCWISGEDS-GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGF 812
D+ V D + G D + ++ P K +++ A + E + KAG
Sbjct: 825 PYDLYFV--DWKMPGLDGIELSRRIKAGNPETSSHKSVVIMISAAEWTTIEGEAKKAG-- 880
Query: 813 ADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNR 872
D + KPL S +A + L N+ G +F +G ++L+ +D +NR
Sbjct: 881 VDRFLSKPLFPSTVADIINDCLGQGNE-HVGENSAMADNF-----KGFRLLLAEDIDINR 934
Query: 873 MVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931
+ L+ ++CA + A++ ++ +D FMDIQMPEMDG+EATRRIR ++
Sbjct: 935 EIVMALLEPTELEIDCAENGAEAVELFKKNADSYDMIFMDIQMPEMDGYEATRRIRALD- 993
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
+G AK ++PI+AMTA+V + CL GM+ +V KP + + +
Sbjct: 994 -------------EGRAK----NIPIVAMTANVFRQDIERCLAAGMNDHVGKPLDFDEVL 1036
Query: 992 RELAKFF 998
+L K+
Sbjct: 1037 AKLRKYL 1043
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 85/141 (60%), Gaps = 5/141 (3%)
Query: 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKA--LIALINEVL 438
AKS FLA +SHE+RTPMN I+GM L ++ ++DY +I G + L+ +IN+VL
Sbjct: 534 AKSNFLANMSHEMRTPMNAIIGMTTLAKSSN-EIERKDYCLN-KIEGASIHLLGVINDVL 591
Query: 439 DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRF 498
D +KIEA K +L FN ++ V+++ + K + + + + +P ++GD R
Sbjct: 592 DMSKIEANKFDLSYTDFNFEKMIQRVVNVINAKVDERHQDFNIRLDPNIPPSLIGDEQRL 651
Query: 499 RQIITNLVGNSVKFT-ERGHI 518
Q+ITNL+ N+VKFT E G I
Sbjct: 652 AQVITNLLSNAVKFTPEEGTI 672
>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
phototrophica DFL-43]
gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
phototrophica DFL-43]
Length = 1337
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 112/156 (71%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++ +L +AE AD AKS+FLA +SHEIRTPMNG+LGM LL T+L + QR +A
Sbjct: 754 ELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTELDTRQRTFADIIVKS 813
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G AL+ +IN++LD +KI+A +L LE+ F+LR ++DV +L S ++ K IEL V +
Sbjct: 814 GTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAAEKDIELIVRIDPA 873
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P+ ++GD GR RQ++TNLVGN++KFTE GH+ ++V
Sbjct: 874 LPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEV 909
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 199/464 (42%), Gaps = 91/464 (19%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
+I + S V L + V DTGIGIP + VF F Q D+S++R + GTG+GL+I+
Sbjct: 906 LIEVTGSPASEGSVDLTLRVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTGLGLAIT 965
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP-GFKGLKAVV 707
LV LM G IS S P GS F C + K++++ + P G + +V
Sbjct: 966 SRLVALMDGTISAESTPGEGSVF--------CVKITMPVEKRTETVRIAPVDVSGARVLV 1017
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASS--TAKNGLT--SSEDKFQPDIILVEKD 763
+D+ V NR ++ ++S+ DA + + + GL+ + + D+ V D
Sbjct: 1018 IDDNAV---------NREILIEQLSAWEFDACAAVSGEEGLSVLKAASDYNVDVNAVILD 1068
Query: 764 CWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRA 823
+ +D A+ + + N LP ++L + ++ E D +MKP+R+
Sbjct: 1069 YQMPEQDGAMVARAI--RKNYSAEALPIIMLTSMDVKASEPDIQTE--IVQATLMKPVRS 1124
Query: 824 SMIAACLQQVLSTENKRQAGRGVPNGSS----FHQGLLRGK------------------- 860
S + L +VL + + +P + H + G
Sbjct: 1125 SELLEKLTKVLQVAAQPKPAAALPQSPADTVQDHDAAVMGAVAETGPADDAWSAKAQDLP 1184
Query: 861 ---------------------KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD-- 897
+I+V +DN VN++V L+ G + + +A++
Sbjct: 1185 SVSDQSAPAQQSDAERASGRLEIMVAEDNEVNQIVFTQILEDLGVKYQIVDNGGSAVELW 1244
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
K+ +P MD+ MP M+G +AT IR+ E+ A+ + H P+
Sbjct: 1245 KMANPALI---LMDVSMPVMNGHQATEAIRKAEA-ADPALG---------------HTPV 1285
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
+ +TA + ++CL+ GMD Y+SKP E L ++ ++ ++
Sbjct: 1286 IGVTAHALTGDMEKCLQAGMDDYLSKPISPEKLAEKIREWLPAE 1329
>gi|455642973|gb|EMF22124.1| hybrid sensory histidine kinase BarA [Citrobacter freundii GTC
09479]
Length = 870
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 112/151 (74%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LDDV++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+GDP R +Q+ITNLVGN++KFTE G+I + V
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILV 433
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 40/199 (20%)
Query: 804 CDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKI- 862
+K K GG A ++KPL ++ + L + + S LL KI
Sbjct: 573 AEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQVNH------------SADPLLLDDSKIA 619
Query: 863 ---LVVDDNGVN-RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+ VDDN N +++ A K V C S A+D+ + FD MDIQMP+MD
Sbjct: 620 MTVMAVDDNPANLKLIGALLEDKVQHVVLCD-SGHQAVDRARQMQ-FDLILMDIQMPDMD 677
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G A I Q+ + P++A+TA + ++ L GM+
Sbjct: 678 GIRACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLSAGMN 717
Query: 979 GYVSKPFEEENLYRELAKF 997
Y++KP EE+ L+ L ++
Sbjct: 718 DYLAKPIEEDKLHNLLLRY 736
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLS 646
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL+
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLA 487
>gi|409198430|ref|ZP_11227093.1| PAS/PAC sensor hybrid histidine kinase [Marinilabilia salmonicolor
JCM 21150]
Length = 1033
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 196/409 (47%), Gaps = 67/409 (16%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+++ + +ED+GIGIP +E++F F QAD ST+R YGGTG+G SISK LVELM G+I
Sbjct: 682 QNLNVHFAIEDSGIGIPPDKREKIFESFTQADGSTTRKYGGTGLGTSISKMLVELMGGKI 741
Query: 660 SFVSRP---------QVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDE 710
+V P GS F F F K+ +D K P K LKA++VD
Sbjct: 742 -WVESPNPNFAWSAENPGSVFHFILPFKADKKNQQDDFKN-------PRMKSLKALIVDN 793
Query: 711 KPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGED 770
+ + + GI ++ D S + + EDK ++IL++ + + E+
Sbjct: 794 HKTNLLLLKKAFHNWGI---TPVTVSDEKSAFEKLI---EDK-SFNLILIDSHIFSNNEE 846
Query: 771 SGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830
+G ++ + PN + L+ + N K GF D V+ KP++ + + +
Sbjct: 847 TGI-QKIKETAPN-----IKTLLFTSQN-------KHAFQGF-DMVLEKPIKHTELFHII 892
Query: 831 QQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
Q++ + ++ +++ KKIL+V+DN +N+ + L + G
Sbjct: 893 NQLIFGIDTDKS------SDNYNSKPKENKKILLVEDNPINQKITEKMLSRIGMVTTITN 946
Query: 891 SAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ A+D L ++ FDA MDIQMP ++G +ATR +R+ G S
Sbjct: 947 NGAEAVDLLIKNQETFDAILMDIQMPVLNGLDATRELRK-----------AGIST----- 990
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
PI+AMTA+V+ + CL+ GM+ Y+ KP + +L + K+
Sbjct: 991 ------PIIAMTANVLKGDREACLEAGMNDYIGKPVKLNDLQHTIQKWM 1033
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 106/164 (64%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D +E++ R A+ AKS+FLA +SHEIRTPMNGI+G LL T L+ Q++
Sbjct: 516 DISAQKEMQHREAEANKAKSEFLANMSHEIRTPMNGIIGATELLGQTRLNREQQNIITII 575
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
L+ +IN++LD +KIEA K+++E+ FN+R+ +D +L + +S +K +EL V
Sbjct: 576 SRSCDNLLNIINDILDFSKIEAGKMKIESYSFNIRSTVDYLLDQMAFRSHDKNLELIASV 635
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
+ +P +LGD GR QII NL+GN+VKFT+ G + +KV L ++
Sbjct: 636 EETIPSNLLGDEGRLIQIIINLMGNAVKFTQEGEVVLKVDLEKQ 679
>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
Length = 1771
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 196/411 (47%), Gaps = 67/411 (16%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++DVTL V D+GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G
Sbjct: 1187 NDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGN 1246
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAA 716
I S+ GSTF FT ++ S + L G +G+ +VVD+
Sbjct: 1247 IGVESQFGHGSTFYFTV-----------KLQISSGQKLTVGQELEGMSVLVVDDNATARD 1295
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ + L +G V T + G + Q + + D + D A+
Sbjct: 1296 IMRTALESMGFNV----------DTVRTGEEAVSRCIQHEYAVALIDWKMPSMDGLEAAR 1345
Query: 777 LLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + P++++++ + + + + + G A I KP+ AS + + L
Sbjct: 1346 QIQQQAKAA----PRILMVSAHANHEFLTQIEQLGLA-GYISKPISASRLLDGIMNAL-- 1398
Query: 837 ENKRQAGR-GVPNGSSFHQGL-------LRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
GR G+ ++ L L+GK++L+V+DN +N VA L++ G +
Sbjct: 1399 ------GRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEFLEQVGIILSI 1452
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A + + ALDKL S +D MD QMP MDG++AT IRQ
Sbjct: 1453 ATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQATMAIRQ-------------------- 1491
Query: 949 KRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
R EL HLP++AMTA+ + + CL+ GM+ +++KP E LY+ L K+
Sbjct: 1492 -RPELAHLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNILYQTLLKYL 1541
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 105/156 (67%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A+AA AK FLA +SHEIRTPMN I+GM L L T L Q++Y + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL+++AV F L +L+D+ +FSEK +K +EL V+ VP +
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GD R Q++ NL+ N++KFTERG + + ++L E+
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQ 1185
>gi|428777290|ref|YP_007169077.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
gi|428691569|gb|AFZ44863.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
Length = 1478
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 185/401 (46%), Gaps = 45/401 (11%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E + L+ V+DTG+GIP Q +F PF QAD+ST+R YGGTG+GL+I K L +LM G I
Sbjct: 995 EQLRLIGIVKDTGMGIPEDKQGSLFDPFTQADASTTRQYGGTGLGLAIVKRLCDLMDGAI 1054
Query: 660 SFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQ 719
+ S+ GS F+FT + L +GL +VV E TQ
Sbjct: 1055 ALESKLDEGSCFTFTVTLEAS----------TAQPTLTRDLQGLSILVVAEN----GATQ 1100
Query: 720 YHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779
L+R + +++ AS +A S+ + P + D + D +
Sbjct: 1101 QALSRQ--LQAWGATVSTASDSATALSLCSQFRETPPFAIAILDSNLP--DLEVQDLIQQ 1156
Query: 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK 839
W+ + + + ++++A N G A + KP+ S + L Q+ +EN+
Sbjct: 1157 WQADSRLQSMAIVMMMAINQVNQSHSLTHLGMRA--TVTKPVVPSQLWQVLTQL--SENQ 1212
Query: 840 RQAGRGVPNGSSF--HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD 897
+ V + L +LVV+DN VN++V G LKK+ V+ A AL
Sbjct: 1213 TTLTQPVSTSQTVIPSPQLKSNSCVLVVEDNRVNQLVIQGMLKKYPLQVQIAHDGLEALV 1272
Query: 898 KLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957
LQ H +D FMD QMP MDG+EATR+IR A + +PI
Sbjct: 1273 MLQKSH-YDLVFMDCQMPNMDGYEATRQIR--------------------AGKHNQTIPI 1311
Query: 958 LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
+AMTA + ++CL GM+ YVSKP E + L ++
Sbjct: 1312 IAMTAYAMVGDKEKCLAAGMNDYVSKPIAVEQVKAVLEQWL 1352
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 115/177 (64%)
Query: 348 GYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
G ++Y AA I + ++ +++ K AE A KS+FLAT+SHEIRTP+NG++GML LL
Sbjct: 814 GNLIYSAAREITERKEVEAELRAAKETAEMAAQTKSEFLATMSHEIRTPINGVIGMLHLL 873
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
DT+L+ QR + AQ +L+ +IN++LD +K+++ L+LE V F+L A+L+D
Sbjct: 874 QDTELTFQQRSQLEIAQSSATSLLGIINDILDFSKVDSGNLKLETVEFDLIALLEDFAKT 933
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+ ++ K +EL + VS V GDP R RQI TNLV N++KFT+ G I +K +L
Sbjct: 934 MALPAQEKDLELILDVSQIQQPVVKGDPSRLRQIFTNLVSNAIKFTQAGEILIKCYL 990
>gi|437848493|ref|ZP_20847168.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435338708|gb|ELP07890.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
Length = 684
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 49 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 108
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 109 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 168
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 169 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 216
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 217 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 248
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 249 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 278
Query: 672 SF 673
F
Sbjct: 279 WF 280
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
++ VDDN N + L+ VE S A+D+ + FD MDIQMP+MDG
Sbjct: 436 VMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQ-FDLILMDIQMPDMDGIR 494
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
A I Q+ + P++A+TA + ++ L GM+ Y+
Sbjct: 495 ACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLSAGMNDYL 534
Query: 982 SKPFEEENLYRELAKF 997
+KP EEE L+ L ++
Sbjct: 535 AKPIEEEKLHNLLLRY 550
>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
Length = 1248
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 111/175 (63%)
Query: 351 LYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT 410
+YG + ++Q + AEAA AKSQF+A +SHEIRTPMNGILGM LLL T
Sbjct: 648 IYGLVSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGILGMTELLLGT 707
Query: 411 DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSE 470
L+ QR +AQ G++L+ +IN++LD AKIEA +LEL F LR +++D L L +
Sbjct: 708 PLNDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVLRTLVEDTLELMAP 767
Query: 471 KSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525
++ KG+EL+ +P + GDP R RQI+TNLV N++KFTE G I V + A
Sbjct: 768 RAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTEHGEIVVDIRRA 822
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 191/407 (46%), Gaps = 42/407 (10%)
Query: 597 GGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
G E + L V DTGIGIP R+F F+QA+ +R YGGTG+GL+ISK LVELM
Sbjct: 833 GSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANGGMARRYGGTGLGLAISKQLVELMG 892
Query: 657 GQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAA 716
GQI S P VGS F F C D+ + D+P +VVD+
Sbjct: 893 GQIEVNSAPGVGSEFLFRVPV--CIGTTQADMAMLEEPDMP----SFNVLVVDDNDTNRT 946
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNA 775
V + L G+ V + ++ A N L + + P D+ LV D + D A
Sbjct: 947 VIENMLTAWGMHVVQAIDGRE----ALNVLMAHPSQDAPFDLALV--DMNMPNLDGMGLA 1000
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
+ + + +G + L K+ILL++ S D+ +A+ GF + KPLR A Q +L
Sbjct: 1001 EAV--RTSGR-YPLLKMILLSSVSSPDDVRRAQDVGF-QRFVAKPLRK---AELRQAILG 1053
Query: 836 TENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAA 895
+R G + + K +LV++DN VN+ V + LK+ G V A+SA
Sbjct: 1054 ISAER--------GDNAQEARRINKAVLVIEDNTVNQEVCSQMLKRLGCEVRVASSALEG 1105
Query: 896 LDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955
L +L FD MDIQMP MDG EA R+ + N S + +
Sbjct: 1106 LRRL-GEQRFDLILMDIQMPGMDGVEALGWFRRGSN-------NRFSFITPS------DT 1151
Query: 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
P++A+TA+ + + L G D Y+SKPF + L++ L + P
Sbjct: 1152 PVIAVTANALEGDEERFLGLGFDDYLSKPFRQSQLHKMLVEHTHIDP 1198
>gi|374294152|ref|YP_005041177.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357428150|emb|CBS91102.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 1314
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 191/425 (44%), Gaps = 53/425 (12%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++ + G ++D L V V DTGIG+ +F PF QAD+ST+R +GGTG+GL+I
Sbjct: 683 VVTVGGRIGTADDYRLEVEVCDTGIGMSPEQTAALFRPFTQADTSTTRRFGGTGLGLAIC 742
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
+ LVELM G +S SRP GS F F+ +C+ + + + LP + +VV
Sbjct: 743 RQLVELMGGAVSVESRPGEGSIFRFSI---RCRVAAGD----TADDRLPRHLMDRRVLVV 795
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768
D+ ++ L R G+ V+ ++ D S + L + QP + LV D +
Sbjct: 796 DDSDAVRSILTDMLERFGLTVE---AVADGLSALRR-LEEGQAGSQPPVELVVLDWRMPD 851
Query: 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAG---------GFADTVIMK 819
D + L P +++ T D A G G V+ K
Sbjct: 852 LDGVETLRRLRALPGAQ-----PPVVMTTAYGADGVQGALDGALDGMAGPAGPVTAVLEK 906
Query: 820 PLRASMIAACLQQVLSTENKRQAG---RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAA 876
P+ S + + L R A R S L G+ +L+V+DN VN+ VA
Sbjct: 907 PVTPSAMFDSVMMALGGAGPRMADAVRRIHDPAQSTELSALVGRTVLLVEDNLVNQQVAC 966
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
G L+ G S + AL L+ FD MD+QMP +DG+E TR IR
Sbjct: 967 GLLELVGIEAMVVGSGEEALQCLREVK-FDLVLMDVQMPGLDGYETTRLIR--------- 1016
Query: 937 MMNGGSSVDGTAKRD-EL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
RD EL LPI+AMTA + + CL GM+ +VSKP + E LY L
Sbjct: 1017 -------------RDLELSSLPIVAMTAHAMAGDRERCLDAGMNDHVSKPIDPEALYAAL 1063
Query: 995 AKFFK 999
A++ K
Sbjct: 1064 ARWLK 1068
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 108/163 (66%), Gaps = 3/163 (1%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
+ ED+ + +E A+ A+ KS FLA +SHEIRTPMN ++G+ L++ TDL+ QRDY
Sbjct: 527 RTEDELARAKE---EADRANRQKSDFLANMSHEIRTPMNAVIGLSHLMMKTDLTPRQRDY 583
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
++L+ +IN++LD +K+EA KL +EA+ F++ +L +V ++ K R KG+EL
Sbjct: 584 LDKIHASSRSLLGIINDILDFSKVEAGKLTIEAIPFHVGDVLQEVATVVLPKLREKGLEL 643
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
V ++ VP ++GDP R Q+I NLV N+VKFTERG + V V
Sbjct: 644 IVDLNGDVPGTLVGDPLRLGQVILNLVSNAVKFTERGEVVVTV 686
>gi|406955643|gb|EKD84035.1| hypothetical protein ACD_39C00287G0001, partial [uncultured
bacterium]
Length = 795
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 196/407 (48%), Gaps = 55/407 (13%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V+D+G G+ S QE++FMPF Q D S SR GGTG+GL+ISK LVE M G+I VS
Sbjct: 215 LHFWVKDSGTGMNQSQQEKLFMPFSQVDDSASRKSGGTGLGLAISKNLVEDMHGKIWVVS 274
Query: 664 RPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLN 723
P GSTF FTA G +Q+ SE KG + +++ + V + +
Sbjct: 275 EPGHGSTFHFTARLGLQH-------RQTSSEASMKSLKGKRMLLLAKNSSERNVLTHSIE 327
Query: 724 RLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783
G++V+ + +D KN SSE + P++I++ D +G N+ K
Sbjct: 328 HSGLVVESAGDCQDVIKQLKN--LSSESRL-PELIIISSDI------TGANSIECALKIR 378
Query: 784 GHVFKLPKLILL--ATNISKDECDKAKAGGFADTVIMKP-----LRASMIAACLQQVLST 836
+ +IL+ A ++K + G V+ +P LRA+M+ A L V +
Sbjct: 379 DSAYSNIPVILITGAYQLAKVLYSADRLGISPIRVLSRPVFPAALRAAMLEA-LGLVKTP 437
Query: 837 ENKRQAGRG----VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ Q + +P S G ++L+V+DN +N+ +A L++ +V A
Sbjct: 438 DFIEQKSKNSPLPIPEAPS-------GARLLLVEDNEMNQELAIEVLRQVNISVILARQG 490
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
+ ALD L+ FD MD QMP MDG++ TR IR + +
Sbjct: 491 QEALDILEKDRQFDGILMDCQMPVMDGYKTTRIIRAIPGLQD------------------ 532
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
+PI+AMTA+ + ++ L GM+ +++KP + ++ LA++ K
Sbjct: 533 --IPIIAMTANAMAGDREKALDAGMNDHIAKPIDVSKMFATLARWIK 577
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 108/176 (61%)
Query: 348 GYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
G + G I I + +++ + K AEAA KS FLA +SHEIRTPMN I+GM L
Sbjct: 29 GTRMIGFHIDIDEQKNNEGALARAKTMAEAATETKSTFLANMSHEIRTPMNAIIGMSQLA 88
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
L TDL+ QR+Y + Q+ + L+ +IN++LD +KIEA K+ ++ F L +L++ +
Sbjct: 89 LQTDLTHQQRNYIEKVQLAAQNLLGIINDILDFSKIEAGKMAIDKTDFWLEDVLNNFAII 148
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
S K+ KGIEL ++ VP ++GDP R QI+TNL N+VKFT+ G I V V
Sbjct: 149 TSLKAEEKGIELIFDIAPDVPLGLVGDPLRLNQILTNLGNNAVKFTDSGEIMVGVE 204
>gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 876
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 197/412 (47%), Gaps = 51/412 (12%)
Query: 596 NGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
NG + DV L + DTGIG+ A ER+F PF QAD++ S+ YGGTG+G+SI++ L+ LM
Sbjct: 508 NGNAADV-LRFILSDTGIGMTKDAMERIFQPFEQADATISKRYGGTGLGMSITRNLITLM 566
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-PGF--KGLKAVVVDEKP 712
GQI S VG+T F K+ + LP P F +GL+A++VD++
Sbjct: 567 GGQIQIESESGVGTTCIVDIPF-----------KKGEGSCLPEPDFAQQGLQALIVDDEQ 615
Query: 713 VRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG 772
T L ++ I K S S DA K D D+ L++ W + G
Sbjct: 616 QVCEQTAVLLEKIKISAKWSLSGADAVDHVKKMHREGRD---IDLCLID---WKMPDMDG 669
Query: 773 FNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832
+ G+ +P +++ A +IS+ E ++A+A G + + KPL + + ++
Sbjct: 670 VEVTRRIRREVGN--DIPIVMISAYDISEVE-EEARAAG-VNGFLPKPLYRTSVYNAIKS 725
Query: 833 VLSTENKRQA-GRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
L + G G G L G +L+ +DN +N+ +AA L+ GA V+C
Sbjct: 726 ALGGKGGTSCDGEGKNGGKP-----LDGFHLLMAEDNALNQEIAATLLRMNGADVDCVED 780
Query: 892 AKAALDKL--QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
+ ALD P +DA MD+QMP MDG EA RRIR A++ +
Sbjct: 781 GQQALDSFLASKPGDYDAILMDVQMPVMDGHEAARRIR-----ASDHPL----------- 824
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
L +PI+A TA+ + L GMD +VSKP + L + L + +
Sbjct: 825 --ALTIPIIATTANAFNDDISAALAAGMDTHVSKPLDITQLCKTLVDCIRKQ 874
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 20/160 (12%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC- 426
+QE + AE A++AKS+FL+ +SHEIRTP+N I+G L T +++ RD A+ A+ C
Sbjct: 346 LQEAMMSAERANMAKSEFLSRMSHEIRTPLNAIIG-----LTTIAAASIRDTAK-AEDCL 399
Query: 427 ------GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIE-- 478
K L+ LIN+VLD +KIE+ K+ L+ F++ +++ +S +++ KGIE
Sbjct: 400 AKITFSSKHLLMLINDVLDMSKIESSKMVLQDEPFDIFELVNGFVSTVYAQAKEKGIEFR 459
Query: 479 --LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
+ F D V +GD R QI+ NL N+VKFT G
Sbjct: 460 ETMEGFGEDTV---FIGDSLRLNQILLNLSSNAVKFTAPG 496
>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1242
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 195/404 (48%), Gaps = 46/404 (11%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+TL V+DTGIGIP AQERVF F Q D+ST+R +GGTG+GL I K L+E+M G+I
Sbjct: 734 LTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGL 793
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF FT F K F +LP LK +VVD +Y
Sbjct: 794 ESVVDQGSTFWFTLPFSISKTASF--------PNLPDTLTKLKILVVDANASVRQSVRYL 845
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ G+ ++ +S + A S ++ ++ QP ++ + +++ I G+ + A ++
Sbjct: 846 IQSWGMELQEASDPEMALSKLRDAAHNN----QPFNLAIFDQNLLIYGKQNL--AAVIQN 899
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE--- 837
+P + KL+L+ + + G A + ++KP+RAS + L ++ E
Sbjct: 900 EP---LMSATKLVLMTSMRRLSSVEDLLDDGLAKSYLIKPVRASRLFDALLTAMANEITV 956
Query: 838 --NKRQAGRGV--PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ +GR N S+ L K+L+ +D+ +N+ V L G + A + +
Sbjct: 957 NLAEFHSGRDSLGDNSSTLSPAGL-DLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGE 1015
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
L+ L H +D FMD QMP++DG+ T +R+ E ++
Sbjct: 1016 QVLELLNDRH-YDLVFMDCQMPKLDGYATTEELRKREG-------------------NDR 1055
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
H ++A+TA + + +CL GMD Y+SKP +E L +L +
Sbjct: 1056 HTTVIALTAHAMPSDRQKCLSAGMDDYISKPITQEELAFKLQTW 1099
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 102/141 (72%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLA +SHEIRTPMNG+LGM LLL T+L + Q+D+ Q + L+++IN++LD +
Sbjct: 582 KSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTSADHLLSIINDILDFS 641
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA+++ELE + F+L L++++ L + ++ NKGIELA V VP ++ GDPGR RQ+
Sbjct: 642 KLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQV 701
Query: 502 ITNLVGNSVKFTERGHIFVKV 522
+ NL+ N +KFT G + ++V
Sbjct: 702 LLNLMSNGIKFTPAGEVTLRV 722
>gi|428300677|ref|YP_007138983.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428237221|gb|AFZ03011.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 1547
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 117/177 (66%), Gaps = 5/177 (2%)
Query: 361 VEDDFHKMQELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQR 417
+E + H+ QEL+V +AE A AKS FLA +SHEIRTPMN ILGM LLL+T L+ QR
Sbjct: 863 LESETHQRQELEVARHQAEQASQAKSAFLANISHEIRTPMNAILGMTGLLLETTLNREQR 922
Query: 418 DYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGI 477
D+ +T +I G L+ LINE+LD +K+EA ++ LE + FNL ++D+L L + + +K +
Sbjct: 923 DFIETIRIGGDELLTLINEILDISKLEAGEMALETLDFNLSTCVEDILDLLAPLAHSKEL 982
Query: 478 ELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDA 534
E+A + VP F+ GD + RQII NL N++KFT +G + + + L +T TDA
Sbjct: 983 EIAALIDSSVPIFLQGDASKLRQIIVNLTNNAIKFTSQGEVVLGLELVSQT--STDA 1037
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 195/408 (47%), Gaps = 41/408 (10%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
S D ++ ++DTGIGI L Q ++F F+Q D+ST+R YGGTG+GL+I K LV LM G+
Sbjct: 1034 STDAIILFNIKDTGIGISLKDQSKLFKAFIQVDASTTRKYGGTGLGLAICKQLVHLMGGE 1093
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVT 718
I S GS F F F K + + + QS E+ +VVD+ +
Sbjct: 1094 IGIESEVGKGSNFWFKIPFKKQLQPL---LPQSNLEE--EILANCSLLVVDDNATNRKII 1148
Query: 719 QYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WISGEDSGFNAQL 777
+ G+ V + ++A + +++++ D+++++ I G G
Sbjct: 1149 YHQATSWGMRVDQA---ENAIVALQLLHSAAKENILYDLVIIDMQMPEIDGITLGAKI-- 1203
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM----IAACLQQV 833
K + + ++P ++L +TN +DE +A GF + ++KP++ S I L +
Sbjct: 1204 ---KADSAISEIPLVMLTSTN-GRDEVKQALEIGFY-SYLVKPVKHSRLLDNIMNILAKK 1258
Query: 834 LSTENKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGALKKFGATVECAA 890
L E+K+ S + + +IL+ +DN VN+ VA L+ G + AA
Sbjct: 1259 LDLESKKFTYLKNKETSLLEENAILNTSKLRILLAEDNVVNQKVALKQLQNIGYKADIAA 1318
Query: 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950
+ + L +L +D FMD QMP +DGF+ATR I +N + +R
Sbjct: 1319 NGQEVL-RLLKKIPYDLVFMDCQMPILDGFDATREI-----------LNWQENTFAARRR 1366
Query: 951 DELHLPI-LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
PI +AMTA+ + CL GMD Y+SKP ++ L L ++
Sbjct: 1367 -----PIVIAMTANAMKEDQQRCLDAGMDDYISKPVSKDKLANVLKRW 1409
>gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
273]
gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
273]
Length = 967
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 190/398 (47%), Gaps = 47/398 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V D+GIGIP + +F PF Q D S+ R YGGTG+GLSIS LV M G+I+ S
Sbjct: 473 VRDSGIGIPQDRIDSIFEPFSQVDGSSVRRYGGTGLGLSISNHLVGRMGGRINVQSTLDE 532
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF F + K E + S S PP F G +++ A + N L
Sbjct: 533 GSTFWFDIILEKQPEQL------SSS---PPVFTGASPIIL------VAWSMVLGNALSA 577
Query: 728 MVKMSS--SIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLDWKPNG 784
++ ++ A G+ ++L++ C+ G D+ GF D+ P
Sbjct: 578 FIESRGHRCLRPAGPEDVPGVLVGFASGPMPMLLLDMRCF--GPDAEGFR----DFVPVL 631
Query: 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG- 843
++ ++LL K+E K AGG + + KP+R + +A L+ + E G
Sbjct: 632 AAYEGLHVVLLVPMGCKEEM-KTLAGGLSAIFLEKPVRRADLAGILKDHVREEGDGGIGK 690
Query: 844 ---RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+ +G+S +LVV+D+ VNR VA LKK G + + A AAL+ ++
Sbjct: 691 ADQKAARSGASQPPSAASPLNVLVVEDSMVNRNVAVSMLKKLGYSPDVAVCGTAALEAMR 750
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAM 960
+D FMD QMPEMDG+EATR IR+ E + G SV P++AM
Sbjct: 751 R-KAYDLVFMDCQMPEMDGYEATRHIREDED------LKGSRSV-----------PVVAM 792
Query: 961 TADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
TA+ + ++C+ GMD Y++KP + + + ++F
Sbjct: 793 TANAMKGDREKCINAGMDDYIAKPLRKSDFKTIMDRYF 830
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 103/157 (65%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++E+ + Q + A A+ AK QFLA +SHEIRTPMNG++GM LLL+TDL Q+ Y
Sbjct: 294 RLEESVLRTQLMAEEAREANAAKGQFLANMSHEIRTPMNGVIGMADLLLETDLDQEQQKY 353
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
QT G+ L+ +IN++LD +KIEA +LELE F L +L+++ + +++ G+EL
Sbjct: 354 VQTIISSGRNLLKIINDILDFSKIEAGRLELEHEEFELAELLEELGCMLGPEAQAAGLEL 413
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG 516
+ ++ P + GDP R RQ++ NL+GN+VKFT G
Sbjct: 414 TLSIAPDGPTRLKGDPQRLRQVLVNLLGNAVKFTHEG 450
>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
Length = 1820
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 109/155 (70%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K AEAA+ AKS+FLA +SHEIRTPMN ++GM LLLDT+L+S QRD+ +T G
Sbjct: 1129 LEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSG 1188
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+++IN++LD +KIE+ KLELE F +R ++ V+ L + K+ K IELA + +V
Sbjct: 1189 DALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQV 1248
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P + GD R RQI+TNL+ N++KFT G + V V
Sbjct: 1249 PMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSV 1283
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 183/416 (43%), Gaps = 56/416 (13%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
++ ++DTGIGI + +F PF+QAD+S +R YGGTG+GL ISK L E+M G + S
Sbjct: 1299 IIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVES 1358
Query: 664 RPQVG----------STFSFTAVFGKCKEYVFEDIKQSKSEDL------PPGFKGLKAVV 707
R VG ++ S +V Y + DL P G + ++
Sbjct: 1359 RGCVGGNPPPGWQRKNSISSASVATGSTFYFSMTVPVVAHADLETSITSPVQLSGKRLLI 1418
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
VD+ P + + + + S +A + G+ DI ++ D +
Sbjct: 1419 VDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMAF-------DIAIL--DVQMP 1469
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
D A+ + +P+ LP +IL T+ + + D + FA + KP++ S +
Sbjct: 1470 EMDGLTLARQIRQRPSYQ--HLPLVIL--TSWGQPDTDLSDIE-FA-ACLNKPIKQSQLF 1523
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGALKKFGA 884
L L + R VP+ S+ L + +IL+ +D VN+ VA LKK G
Sbjct: 1524 DVLAASLGNQPIR--ASVVPDRSAQVNSCLAQQIPLRILLAEDIVVNQKVALLILKKLGY 1581
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
+ A+ L+ LQ +D MD+ MPEMDG +A++ I Q S +
Sbjct: 1582 RADVVANGLEVLEALQR-QSYDVVLMDVNMPEMDGLKASQIICQTWSPRSRPY------- 1633
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
I+AMTA+ + + CL GMD Y+SKP + E L + L K S
Sbjct: 1634 ------------IIAMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHPS 1677
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 34/156 (21%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK++L+VDDN NR + + + A S AL + FD +D+QMPE
Sbjct: 1411 LSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMAFDIAILDVQMPE 1470
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA------DVIHATFD 970
MDG R+IRQ S HLP++ +T+ D+ F
Sbjct: 1471 MDGLTLARQIRQRPSYQ--------------------HLPLVILTSWGQPDTDLSDIEFA 1510
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
CL +KP ++ L+ LA ++P+ +
Sbjct: 1511 ACL--------NKPIKQSQLFDVLAASLGNQPIRAS 1538
>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1817
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 109/155 (70%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ K AEAA+ AKS+FLA +SHEIRTPMN ++GM LLLDT+L+S QRD+ +T G
Sbjct: 1126 LEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSG 1185
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+++IN++LD +KIE+ KLELE F +R ++ V+ L + K+ K IELA + +V
Sbjct: 1186 DALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQV 1245
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P + GD R RQI+TNL+ N++KFT G + V V
Sbjct: 1246 PMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSV 1280
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 184/416 (44%), Gaps = 56/416 (13%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
++ ++DTGIGI + +F PF+QAD+S +R YGGTG+GL ISK L E+M G + S
Sbjct: 1296 IIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVES 1355
Query: 664 RPQVG----------STFSFTAVFGKCKEYVFEDIKQSKSEDL------PPGFKGLKAVV 707
R VG ++ S +V Y + DL P G + ++
Sbjct: 1356 RGCVGGNPPPGWQTKNSISSASVATGSTFYFSMTVPVVAHADLETPITSPVQLSGKRLLI 1415
Query: 708 VDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767
VD+ P + + + + S +A + G+ DI ++ D +
Sbjct: 1416 VDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMAF-------DIAIL--DVQMP 1466
Query: 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
D A+ + +P+ LP +IL T+ + + D + FA + KP++ S +
Sbjct: 1467 EMDGLTLARQIRQRPSYQ--HLPLVIL--TSWGQPDTDLSDIE-FA-ACLNKPIKQSQLY 1520
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVNRMVAAGALKKFGA 884
L L + R VP+ S+ L + +IL+ +D VN+ VA LKK G
Sbjct: 1521 DVLASTLGNQPIR--ASVVPDRSTEINSCLAQQIPLRILLAEDIVVNQKVALLILKKMGY 1578
Query: 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944
+ A+ L+ LQ +D MD+ MPEMDG +A++ I Q S ++
Sbjct: 1579 RADVVANGLEVLEALQR-QFYDVVLMDVNMPEMDGLKASQIICQTWSPSSRPY------- 1630
Query: 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000
I+AMTA+ + + CL GMD Y+SKP + E L + L K S
Sbjct: 1631 ------------IIAMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHPS 1674
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 34/156 (21%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK++L+VDDN NR + + + A S AL + FD +D+QMPE
Sbjct: 1408 LSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMAFDIAILDVQMPE 1467
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA------DVIHATFD 970
MDG R+IRQ S HLP++ +T+ D+ F
Sbjct: 1468 MDGLTLARQIRQRPSYQ--------------------HLPLVILTSWGQPDTDLSDIEFA 1507
Query: 971 ECLKCGMDGYVSKPFEEENLYRELAKFFKSKPLSGA 1006
CL +KP ++ LY LA ++P+ +
Sbjct: 1508 ACL--------NKPIKQSQLYDVLASTLGNQPIRAS 1535
>gi|359462124|ref|ZP_09250687.1| two-component sensor histidine kinase [Acaryochloris sp. CCMEE
5410]
Length = 1318
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 357 HIVKVEDDFHKM-QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST 415
+++K E + +++ ++ + AE A AKS+FLA +SHEIRTPMNG+LGM LLLDT+L S
Sbjct: 761 YLLKQERENNRLLKDARKAAEEAVQAKSEFLANMSHEIRTPMNGVLGMAGLLLDTELQSE 820
Query: 416 QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNK 475
QR++ +T Q CG +L+ +IN++LD +KIEA KL+LE FNLR +++ L L + K+ K
Sbjct: 821 QRNFVETIQNCGDSLMVIINDILDFSKIEAGKLDLEECSFNLRTCIEEALDLLAVKAAQK 880
Query: 476 GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+EL + E V GDP R RQI+ NL+GN++KFT G + V V
Sbjct: 881 QLELNYLWHADITEQVEGDPTRLRQILVNLIGNAIKFTNVGEVTVAV 927
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 178/403 (44%), Gaps = 48/403 (11%)
Query: 599 SEDVT---LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELM 655
+EDV + + V DTGIGIP R+F F Q DSS +R YGGTG+GL+ISK L ELM
Sbjct: 944 TEDVQHFEVEIAVNDTGIGIPPDKMSRLFDSFSQVDSSITRQYGGTGLGLTISKHLCELM 1003
Query: 656 RGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRA 715
G++ S GS+F+FT V + +E P + ++VD+
Sbjct: 1004 GGRMWVRSEVGKGSSFAFTVQL-----QVKPESAGLAAETWTPALANKRVLIVDDNATSR 1058
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ G+ K ++S++DA +N + F II D + +D G A
Sbjct: 1059 RLLAQQTIDWGMKPKSANSVEDALKMLQN----VPEPFDVAII----DWQMPQKDGGVLA 1110
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835
Q + N LI+L+T I D KA+ KP++ ++ L V +
Sbjct: 1111 QEIR---NRSALATMPLIVLSTVI--DSKLKAEDKLLFQARCHKPIKPKLLRQSLLDVFA 1165
Query: 836 TENKRQAGRGVPNGSS--FHQGLLRG--KKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
+ VP ++ + L + KILV +D VN+ + L+K G + +
Sbjct: 1166 AP---ELSTKVPQSTAPKIDEELAQQFPLKILVAEDVVVNQKLVLLLLQKMGYRADVVQN 1222
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
ALD L +D MD+QMPEMDG A R+I + S+A
Sbjct: 1223 GLEALDALHR-QPYDLILMDMQMPEMDGLTAARQICEEYSEAERPY-------------- 1267
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
I+A+TA+ + C GM+ Y+SKP + E L R +
Sbjct: 1268 -----IIALTANAMQGDRQRCFDAGMNAYISKPIQVEQLVRAI 1305
>gi|421178715|ref|ZP_15636319.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|404548010|gb|EKA56987.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
Length = 1417
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter aurescens
TC1]
Length = 1153
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 184/400 (46%), Gaps = 47/400 (11%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGI +R+F F QAD+ST+R YGGTG+GL+IS+ L E+M G+I S P V
Sbjct: 640 VRDTGIGISAENHQRLFESFAQADASTTRRYGGTGLGLAISRRLTEVMGGKIGLDSEPGV 699
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F F + +E LP G + +VVD+ V L G+
Sbjct: 700 GSRFWFDLELPLGP-------AATDTESLPATLAGRRVLVVDDNATNRLVLDTQLASWGM 752
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
+ S+ DA+S ++ DI +V D + D A+ + + NG
Sbjct: 753 ---VPVSVADAASALDEYRAAASSSHPYDIAVV--DMCMPDTDGLQLARNIKNESNGS-- 805
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
P +ILL + + + D AG + KP+R+S + L +VL+T+ G P
Sbjct: 806 GGPGIILLTSTMQVERSDLTSAG--IREYLTKPVRSSELYNRLLRVLATKTT-----GAP 858
Query: 848 NGSSFHQ------GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQS 901
+ + + + R K+LV +DN VN++VA G + G V + A+ S
Sbjct: 859 SAPAINHPVETADPVPRLGKLLVAEDNEVNQLVARGMANRLGYEVHIVDDGEQAVSAALS 918
Query: 902 PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961
+ A MD MP MDGF+AT+ IR NG S+ +PI+AMT
Sbjct: 919 -GTYAAVLMDCHMPVMDGFDATKAIRA---------RNGHSA----------RIPIIAMT 958
Query: 962 ADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
A + + C GMD Y+SKP + L LA++ +
Sbjct: 959 AGALDEDRERCFAAGMDDYISKPVDLAKLAEVLARWVPQQ 998
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 99/143 (69%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KS+FLAT+SHEIRTP+N ++G+ +L++DT LS QR YAQ + G+ L+ LIN++LD +
Sbjct: 478 KSEFLATMSHEIRTPLNAVIGLTSLMMDTPLSEGQRQYAQGVKGAGEVLLTLINDILDFS 537
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA K++L+ F+ R ++++V L E ++ K +EL + VP ++GD GR RQI
Sbjct: 538 KLEAGKVDLDINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQI 597
Query: 502 ITNLVGNSVKFTERGHIFVKVHL 524
+ NL N+VKFT G + V+V +
Sbjct: 598 LLNLSSNAVKFTPDGEVEVQVSV 620
>gi|254236999|ref|ZP_04930322.1| hypothetical protein PACG_03025 [Pseudomonas aeruginosa C3719]
gi|126168930|gb|EAZ54441.1| hypothetical protein PACG_03025 [Pseudomonas aeruginosa C3719]
Length = 1417
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVGLR 906
>gi|254415523|ref|ZP_05029283.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196177704|gb|EDX72708.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1568
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 108/155 (69%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+++ + AEAA AKS+FLAT+SHEIRTPMN ++GM LLLDT+L+S QR +A+T + G
Sbjct: 894 LEKARQTAEAATQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTELTSDQRYFAETIRNSG 953
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KIE+ K+ELE F LR +++ L L + K+ K +ELA + +
Sbjct: 954 DALLTIINDILDFSKIESGKMELEEQPFELRTCIEEALDLLTTKAAEKNLELAYLIDSQT 1013
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
P ++ GD R RQI+ NL+ N+VKFT G + V V
Sbjct: 1014 PNWIAGDVTRLRQILVNLISNAVKFTPTGEVLVSV 1048
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 186/425 (43%), Gaps = 82/425 (19%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI---- 659
L V+DTGIGIP+ R+F F Q DSSTSR YGGTG+GL+I K L E+M GQ+
Sbjct: 1065 LQFAVKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLGLAICKRLCEMMGGQMWVES 1124
Query: 660 --SFVSRPQV-------------GSTFSFTAVFGKCKEYVFEDIKQSKSEDLP---PGFK 701
S P GSTF FT + E I S + P
Sbjct: 1125 GGSVAGNPPAGWIATDSGEESSGGSTFYFTI--------LSESIPDSAVVEQPICATYLA 1176
Query: 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVE 761
G + ++VD+ + L R M S ++ A L+ E Q DI ++
Sbjct: 1177 GKRLLIVDDNTTNCQI----LIRQAQSWGMESQATESGQEALAWLSQGE---QYDIAIL- 1228
Query: 762 KDCWISGEDS-GFNAQLLDWKPNGHVFK---LPKLILLATNISKDECDKAKAGGFADTVI 817
D + G D Q+ H FK P LIL +++ K E +
Sbjct: 1229 -DMQMPGMDGITLGEQI------RHQFKDKEFPLLIL--SSMGKPEIASGVVEANFAAFL 1279
Query: 818 MKPLRASMIAACLQQVLS---TENKRQAGRGVPNGSSFHQGLLRGK---KILVVDDNGVN 871
KP++ S + L Q+LS T+ KR P GS L + +ILV +DN VN
Sbjct: 1280 SKPIKQSQLYNLLTQILSGQPTKIKRS-----PVGSPSLDPTLAQRIPLRILVAEDNKVN 1334
Query: 872 RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931
+ +A L++ G + A + ++ L+ +D FMD+QMPEMDG +ATR I Q
Sbjct: 1335 QQLALQLLQRMGYRADVAGNGLEVIEALRR-QPYDVVFMDVQMPEMDGLDATRHICQQWL 1393
Query: 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLY 991
AN I+AMTA+ + ++CL+ GMD Y+SKP L
Sbjct: 1394 PANRPR-------------------IIAMTANAMQGDREKCLEVGMDDYISKPIRVNELV 1434
Query: 992 RELAK 996
R L++
Sbjct: 1435 RVLSQ 1439
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 36/168 (21%)
Query: 845 GVPNGSSFHQGL----LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
+P+ + Q + L GK++L+VDDN N + + +G + S + AL L
Sbjct: 1159 SIPDSAVVEQPICATYLAGKRLLIVDDNTTNCQILIRQAQSWGMESQATESGQEALAWLS 1218
Query: 901 SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA- 959
+D +D+QMP MDG +IR K E L IL+
Sbjct: 1219 QGEQYDIAILDMQMPGMDGITLGEQIRHQ------------------FKDKEFPLLILSS 1260
Query: 960 -----MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002
+ + V+ A F ++SKP ++ LY L + +P
Sbjct: 1261 MGKPEIASGVVEANFA--------AFLSKPIKQSQLYNLLTQILSGQP 1300
>gi|153869707|ref|ZP_01999246.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
PS]
gi|152073825|gb|EDN70752.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
PS]
Length = 1183
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 171/324 (52%), Gaps = 29/324 (8%)
Query: 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDT---DLSSTQRDYAQTAQICGKALIA 432
E A+ KS+FLA +SHE+RTP+N +L + +L D +L+ Q +YA+T G L++
Sbjct: 448 EQANQYKSEFLANMSHELRTPLNSLLILGQILADNKAGNLTDKQVEYAKTIHSAGMDLLS 507
Query: 433 LINEVLDRAKIEARKLEL--EAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEF 490
LIN++LD +K+EA K+EL EAVL L +LD + F + K + + ++D++P
Sbjct: 508 LINDILDLSKVEAGKMELRFEAVL--LTELLDTLKHKFRHVAEEKSLTFHITLADELPLT 565
Query: 491 VLGDPGRFRQIITNLVGNSVKFTERGHIFVKV-HLAERTMVKTDAKDETLLNGGTEEGVC 549
+ D R +QI+ NL+ N+ KFT G + ++V +L E+++ ++ +G T +
Sbjct: 566 LYTDTQRLQQILNNLLSNAFKFTSEGEVTLEVNYLVEKSLQSLS----SIRHGLTSSPIG 621
Query: 550 RSGTGQFNTLSGLEAADGRNSWDKFKHLIDA--EGFQSNASIINMMASNGGSEDVTLMVC 607
R T EA GR + +K + E F II
Sbjct: 622 REVPLYAPTSEREEAVSGR-APEKIQTEYPGIEENFLEPTKIIAFR-------------- 666
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIGIP Q+ +F F QAD +TSR +GGTG+GLSIS+ L +L+ G++ S+
Sbjct: 667 VTDTGIGIPEEKQKAIFDAFQQADGTTSRRFGGTGLGLSISRQLAQLLGGELQLESQENQ 726
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQS 691
GSTF E F ++QS
Sbjct: 727 GSTFILLLPEKASAEQAFNRLEQS 750
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVEC--AASAKAALDKLQSPHCFDACFMDIQ 913
LLR KK+L+VDD+ N L+ G +E + K AL L D MDI
Sbjct: 1057 LLRNKKVLIVDDDIRNTFALMTYLEGEGMEMEIFIGENGKEALTMLDEHPDIDIVLMDIM 1116
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEMDG+EA R IR+ LPI+A+TA + +C+
Sbjct: 1117 MPEMDGYEAIRAIRKQTRFQK--------------------LPIIALTAKAMKGDKTKCI 1156
Query: 974 KCGMDGYVSKPFEEENL 990
+ G + Y+SKP + E L
Sbjct: 1157 EAGANDYLSKPVDTEKL 1173
>gi|345871211|ref|ZP_08823158.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343920621|gb|EGV31350.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1530
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 191/414 (46%), Gaps = 69/414 (16%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V DTGIG+P Q +F F QAD+ST+R +GGTG+GLSISK L E M G+I S V
Sbjct: 956 VRDTGIGLPPEQQRSLFRAFSQADTSTTRQFGGTGLGLSISKHLTERMGGEIWVESTHGV 1015
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GSTF FT GK + + Q ++ L L+ +VVD+ T H L
Sbjct: 1016 GSTFHFTVQLGKHRAAAH--LPQKGADAL----AALRVLVVDDN-----ATARHT--LST 1062
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK------ 781
M+K D + + + L +C + D + LLDWK
Sbjct: 1063 MLKAIGPQVDEADSGEAAL----------------ECLRAAGDDPYGLVLLDWKMPRIDG 1106
Query: 782 --------PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833
+ LP LI++ ++ + AK G + + +S++ A +Q +
Sbjct: 1107 IATARAILESTDTGPLPTLIMVTAYGREEAMNAAKDVGISGFLTKPVTPSSLLDAIMQSL 1166
Query: 834 LSTE-NKRQAGRG-VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAAS 891
ST ++R + R + + L G K+L+V+DN VN+ + L G +VE A +
Sbjct: 1167 RSTAISERPSARNRIATADDLAK--LSGAKVLIVEDNDVNQELVQALLCSNGLSVEIADN 1224
Query: 892 AKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+ ALD L FD MD+QMP MDG+ ATR IR RD
Sbjct: 1225 GEEALDWLDR-EPFDGVLMDLQMPVMDGYTATRAIRAQPR-----------------FRD 1266
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF-KSKPLS 1004
LPILA+TA+V+ + + GM+ ++KP + L+ LAK+ ++PL+
Sbjct: 1267 ---LPILAITANVMTGERERAIAAGMNDQIAKPIDVPTLFATLAKWIVPARPLA 1317
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 99/160 (61%)
Query: 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICG 427
+Q K AEA + AKS+FLA +SHEIRTPMN I+GM L L T L QR+Y +
Sbjct: 786 LQAAKSEAEAGNRAKSEFLANMSHEIRTPMNAIIGMTHLALQTKLDRKQRNYIEKVSHSA 845
Query: 428 KALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKV 487
AL+ +IN++LD +KIEA KL +E + FNL IL + ++ K+ KG+EL + +
Sbjct: 846 DALLGIINDILDVSKIEAGKLAIERIDFNLEDILGTLATVVGLKADEKGLELVFDLPQDL 905
Query: 488 PEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
P ++GDP R QI+ NL N+VKFT+ G I + + E+
Sbjct: 906 PLALIGDPLRLGQILINLGNNAVKFTQHGEIVIGAEVLEQ 945
>gi|423067354|ref|ZP_17056144.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406710928|gb|EKD06130.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1242
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 195/404 (48%), Gaps = 46/404 (11%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+TL V+DTGIGIP AQERVF F Q D+ST+R +GGTG+GL I K L+E+M G+I
Sbjct: 734 LTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGL 793
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF FT F K F +LP LK +VVD +Y
Sbjct: 794 ESVVDQGSTFWFTLPFSISKTASF--------PNLPDTLTKLKILVVDANASVRQSVRYL 845
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ G+ ++ +S + A S ++ ++ QP ++ + +++ I G+ + A ++
Sbjct: 846 IQSWGMELQEASDPEMALSKLRDAAHNN----QPFNLAIFDQNLLIYGKQNL--AAVIQN 899
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE--- 837
+P + KL+L+ + + G A + ++KP+RAS + L ++ E
Sbjct: 900 EP---LMSATKLVLMTSMRRLSSVEDLLDDGLAKSYLIKPVRASRLFDALLTAMANEITV 956
Query: 838 --NKRQAGRGV--PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ +GR N S+ L K+L+ +D+ +N+ V L G + A + +
Sbjct: 957 NLAEFHSGRDSLGDNSSTLSPAGL-DLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGE 1015
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
L+ L H +D FMD QMP++DG+ T +R+ E ++
Sbjct: 1016 QVLELLNDRH-YDLVFMDCQMPKLDGYATTEELRKREG-------------------NDR 1055
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
H ++A+TA + + +CL GMD Y+SKP +E L +L +
Sbjct: 1056 HTTVIALTAHAMPSDRQKCLSAGMDDYISKPITQEELAFKLQTW 1099
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 102/141 (72%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLA +SHEIRTPMNG+LGM LLL T+L + Q+D+ Q + L+++IN++LD +
Sbjct: 582 KSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTSADHLLSIINDILDFS 641
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA+++ELE + F+L L++++ L + ++ NKGIELA V VP ++ GDPGR RQ+
Sbjct: 642 KLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQV 701
Query: 502 ITNLVGNSVKFTERGHIFVKV 522
+ NL+ N +KFT G + ++V
Sbjct: 702 LLNLMSNGIKFTPAGEVTLRV 722
>gi|392982159|ref|YP_006480746.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|416857566|ref|ZP_11912833.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
gi|334840483|gb|EGM19136.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
gi|392317664|gb|AFM63044.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|453043322|gb|EME91054.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA21_ST175]
Length = 1417
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
Length = 2241
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 191/410 (46%), Gaps = 63/410 (15%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L + VEDTGIGI +F F QA+ S +R +GGTG+GL+I K LVELM+GQI
Sbjct: 1648 VQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGLAICKQLVELMQGQIQV 1707
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S+P +GSTFS + E++ Q ++++ + L +VVD+ P+ V
Sbjct: 1708 RSQPNIGSTFSLKINLERA-----EELAQPSAKNI---YHNLNILVVDDNPISQQVISRM 1759
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
L L I ++ A ++ + +++ F+ ++DWK
Sbjct: 1760 LGHLNISCTQANDGSKAVECVQDA---------------------ASKNTHFDMVIMDWK 1798
Query: 782 -PN------GHVFK------LPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAA 828
PN + K P IL+ + +DE + D + KP+ S +
Sbjct: 1799 MPNMDGIEASRIIKQELELDTPPHILMLSAYDRDEVKLLGSPITIDHYLEKPVSQSTLVE 1858
Query: 829 CLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVEC 888
+ +VL + Q ++ + +IL+V+DN +NR VA L + G V+
Sbjct: 1859 TIGEVLGMCAQTQLESEPLTQFDANKFDFKHCQILLVEDNEINRHVALELLSETGIKVDI 1918
Query: 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948
A + + A++ L S + + MDIQMP MDG AT+RIRQ++SK
Sbjct: 1919 ALNGQDAVN-LVSVNDYHLILMDIQMPIMDGLTATKRIRQLKSKE--------------- 1962
Query: 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
LPI+AMTA + + ++ L GM+ +++KP E L+ L ++
Sbjct: 1963 -----ELPIIAMTAHAMPSEKEKSLIAGMNDHLTKPIEPNYLFNALNQWL 2007
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 105/164 (64%)
Query: 360 KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDY 419
++ + ++ + ++ A A+ +KS FLA +SHEIRTPMNG++G+ LLL T+L + Q++Y
Sbjct: 1473 RITERTRELNQARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKTNLDNKQKNY 1532
Query: 420 AQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIEL 479
A+ +L+ +IN++LD +KIE K+ LE FNL ++ V ++ ++ K +EL
Sbjct: 1533 AKKTLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTTICELRAHTKDLEL 1592
Query: 480 AVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
V +S +P ++GD R QI+ NL N+VKFT+ GH+ ++V
Sbjct: 1593 IVDISPNIPFNLIGDALRLEQILLNLTSNAVKFTKSGHVIIRVQ 1636
>gi|15599307|ref|NP_252801.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|418584501|ref|ZP_13148562.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|421518662|ref|ZP_15965336.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|9950314|gb|AAG07499.1|AE004827_8 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PAO1]
gi|375045723|gb|EHS38298.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|404348144|gb|EJZ74493.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
Length = 1417
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|410626121|ref|ZP_11336889.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM 241]
gi|410154340|dbj|GAC23658.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM 241]
Length = 1172
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 199/424 (46%), Gaps = 42/424 (9%)
Query: 579 DAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHY 638
+A F + +I +A G ++ L V+DTGIGI Q+ +F FMQ DSST+RH+
Sbjct: 786 NAIKFTHHGEVILRVALEGENQ---LKFFVQDTGIGIHEDNQKALFSKFMQVDSSTTRHF 842
Query: 639 GGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPP 698
GGTG+GL+ISK L EL+ G + S Q GSTF FT D S P
Sbjct: 843 GGTGLGLAISKQLSELLGGSVGVSSEWQQGSTFWFT-----IAPEALNDNPVQFSPLFPD 897
Query: 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDII 758
L+ ++VD+ P + V L+ ++V+ + +AS K S + D+
Sbjct: 898 RETPLQVLLVDDNPTLSTVLHQWLSANNMVVQNAV---NASGALKALRQSHLKTTKIDVA 954
Query: 759 LVEKDCWISGEDSGFNA-QLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTV- 816
L++ + SG N +L + +F +IL+ + D +K + A V
Sbjct: 955 LIDSNL------SGINGIELTKAIRSNDLFAKLHIILMTPH---DWLEKGTSSQLASPVS 1005
Query: 817 -IMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVA 875
+ KPL+ + + K + +P ++ + IL+V+DN +N+ V
Sbjct: 1006 YVAKPLKPETLRGAFTGAIENGAKTKLITSLPETKLLNKN-RQAPHILLVEDNFINQQVV 1064
Query: 876 AGALKKFGATVECAASAKAALDKLQSPHC-FDACFMDIQMPEMDGFEATRRIRQMESKAN 934
LKK +V+ A + + A+ L+ FDA MD QMP MDG+EA+R IR+
Sbjct: 1065 IEMLKKLQCSVQVAENGQEAIHTLEESEVKFDAILMDCQMPIMDGYEASRTIRK------ 1118
Query: 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994
Q +N S+ LPI+A+TA+ + + CL GM+ Y++KP L EL
Sbjct: 1119 SQHINYTST-----------LPIIALTANAMKGDKEACLAAGMNAYLTKPIVLAELRAEL 1167
Query: 995 AKFF 998
K+
Sbjct: 1168 IKWL 1171
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 125/192 (65%), Gaps = 2/192 (1%)
Query: 347 VGYILYGAAIHIV--KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML 404
VGY Y + +V D +M++ + +A+ A AKS+FLA +SHEIRTP+NGI+GM
Sbjct: 623 VGYAEYQNGLPVVLRGAFQDITEMKKAEEQAKEASRAKSEFLANMSHEIRTPINGIVGMN 682
Query: 405 ALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464
LLL T+L+ QR +A+ ++L+ LIN++LD +KIEA KL +E++ F+L +L ++
Sbjct: 683 DLLLATELTHKQRHFAELVHSSSESLLLLINDILDFSKIEAGKLSIESIYFDLHLLLGNI 742
Query: 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
+ F+ +++ KG+EL + VP+++ DPGR RQI+ NL+GN++KFT G + ++V L
Sbjct: 743 IDTFASRAQQKGLELVFDLHMDVPQWITSDPGRIRQILNNLLGNAIKFTHHGEVILRVAL 802
Query: 525 AERTMVKTDAKD 536
+K +D
Sbjct: 803 EGENQLKFFVQD 814
>gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii
GP6]
gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii
GP6]
Length = 1103
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 351 LYGAAIHIVKVEDDFHKMQELK---VRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL 407
+YGA I + D ++LK RAE A +KS FLA +SHEIRTPMN ++GM LL
Sbjct: 557 IYGAIESIRDITDQKMVEEDLKNSKERAELATRSKSNFLANMSHEIRTPMNAVVGMTGLL 616
Query: 408 LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSL 467
L+TDL QR+Y +T + G L+A+IN +LD +KIE K+ELE + F+L +++ + +
Sbjct: 617 LETDLKPEQREYLETIRTGGNTLLAIINNILDYSKIEGEKMELEILPFDLLGCIEESMDM 676
Query: 468 FSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+ + KG+E+A F D VP F+LGD R RQI+ NL+GN+ KFTE+G I + +
Sbjct: 677 VAANAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLLGNATKFTEKGEIVLSL 731
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 188/399 (47%), Gaps = 65/399 (16%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+ L V DTGIGI R+F F Q DSST+RHYGGTG+GL+IS+ LVE+M G+I
Sbjct: 741 IELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTRHYGGTGLGLAISRRLVEMMEGRIWV 800
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S VGSTF FT +C+ + S+SE PG L R + + H
Sbjct: 801 ESEKGVGSTFHFTI---RCQLHH----DNSRSE---PGDSILSGK-------RVLIVEGH 843
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG----EDSGFNAQL 777
+ ++ +M+ S L +E+ + L+ + ISG + + F+ +
Sbjct: 844 RSVRDMLFRMAGS----WGMEAVALARAEEAIE----LMTRGTAISGTGQLKSNSFDCVI 895
Query: 778 LDWK-PNGHVFKLPK---------LILLATNISKDECDKAKAGGFADTVIMKPLRASMIA 827
LD P+ L + +++ +++ ++ G+ + KP++ ++
Sbjct: 896 LDTVLPDMEGLLLARRIKDLSVASFVVMISHMGEEVVKDDSLSGW----LTKPVKPRLLK 951
Query: 828 ACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVE 887
L ++S + + SS + + R IL+ +DN +N+ VA L+ G +
Sbjct: 952 RLLIDLISPPKRELQDFEAQSVSS--KDIARDLSILLAEDNPINQKVALIMLRHLGYKAD 1009
Query: 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGT 947
A+S L ++ H +D MDIQMP+MDG EATR IR+M DG+
Sbjct: 1010 VASSGPEVLTSVKRKH-YDVILMDIQMPDMDGLEATRHIREM---------------DGS 1053
Query: 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFE 986
+ I+AMTA + +E LK GM+GY+S+P +
Sbjct: 1054 VSQPH----IIAMTAYALEGDREEFLKAGMNGYLSEPIQ 1088
>gi|421158002|ref|ZP_15617302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC 25324]
gi|404550065|gb|EKA58871.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC 25324]
Length = 1417
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|357404866|ref|YP_004916790.1| histidine kinase [Methylomicrobium alcaliphilum 20Z]
gi|351717531|emb|CCE23196.1| putative Histidine kinase [Methylomicrobium alcaliphilum 20Z]
Length = 1181
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 195/416 (46%), Gaps = 55/416 (13%)
Query: 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVS 663
L V DTG+GIP+ Q +F F Q D+ST+R +GGTG+GLSI + LV++M G++ S
Sbjct: 690 LRFSVRDTGMGIPIEKQAEIFNAFSQEDTSTTRRFGGTGLGLSICRYLVQMMGGELGVNS 749
Query: 664 RPQVGSTFSFTAVFGKC--KEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
+GS F + +EYV P ++ D+ PV +
Sbjct: 750 ELGIGSEFWLMLPIERVEPQEYVH------------PSIAFQNVLIADDHPVAREMLAAT 797
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
+ LG ++ + + + + PDI+L++ W +G A +
Sbjct: 798 VRSLGW---TPEVVESGEEVVERMIERARNNKLPDIVLLD---WCMPGVNGLEAGKRIRQ 851
Query: 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQ 841
G + P +I++AT +D + AD V+ KP+ AS + V + +RQ
Sbjct: 852 ELGDIADAP-IIVIATAHDRDALLREPDVAIADAVLHKPITAS---SLYNAVSDAKQRRQ 907
Query: 842 AGRGVP-NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ 900
R + N ++ + L G +L+VDD+ +NR +A L+ GATV A AAL L+
Sbjct: 908 GERSIQHNNTTPSEKRLNGLNLLLVDDSEINRDMARRILEAEGATVYLADEGHAALQWLR 967
Query: 901 -SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959
+P D MDIQMP MDG+EATR+IR++ G ++ LPI+A
Sbjct: 968 LNPDLADVVLMDIQMPLMDGYEATRQIREVL----------GLTL----------LPIVA 1007
Query: 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF---------KSKPLSGA 1006
+TA L GM+G+++KPF+ E L L ++ K++P++ A
Sbjct: 1008 LTAGAFKNQQAAALNAGMNGFIAKPFDVEELIAYLQQYVTGPQVTADSKNEPIASA 1063
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 96/156 (61%)
Query: 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQIC 426
++Q K AE K FLA +SHEIRTPMN ILG+ LL +L + + + + +I
Sbjct: 523 ELQAAKQEAERLASVKGNFLANMSHEIRTPMNAILGLAYLLEKAELGTDELNLVKKIRIA 582
Query: 427 GKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDK 486
G++L+ +IN++LD +KIE+ +LE+E F L +LD++ +L S + +EL + + +
Sbjct: 583 GRSLLGIINDILDFSKIESGRLEIEHAPFRLSDVLDNLATLMSSIEYSNKVELIMGPAPE 642
Query: 487 VPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
EF+ GD R QI+ NL N++KFT++G + + V
Sbjct: 643 GIEFLRGDALRLEQILVNLTSNALKFTQQGSVTISV 678
>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 1320
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 117/167 (70%), Gaps = 4/167 (2%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIAL 433
+AEA+ AKSQFLA +SHEIRTPMNG++G+ LLLDTDL QR A+ + G+ L+AL
Sbjct: 656 QAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDTDLDPEQRRLAEIVRDSGENLLAL 715
Query: 434 INEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLG 493
IN++LD +KIEA KLELE + F+LR ++++VL + + + K +EL ++ +VP V G
Sbjct: 716 INDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEKDLELTYRIAPQVPTAVRG 775
Query: 494 DPGRFRQIITNLVGNSVKFTERGHIFVKVHL----AERTMVKTDAKD 536
DP RQ+I NL+GN++KFTERG + +++ L A R +++ + D
Sbjct: 776 DPRYLRQVIVNLMGNAIKFTERGEVGLQLALERAEAGRALIRFEVHD 822
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 186/396 (46%), Gaps = 38/396 (9%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV 667
V D+GIGIP ++F F Q DSST+R +GGTG+GL I+K L +LM G I SRP
Sbjct: 820 VHDSGIGIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQLMNGDIGLESRPGQ 879
Query: 668 GSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGI 727
GS F FTA F +C + + + + + +D + A++ L G
Sbjct: 880 GSRFWFTAEF-ECSPQTATEYRVCERDID-DVRVLVVDDHLDNRAQAASL----LRAWGC 933
Query: 728 MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHVF 787
V ++ DA + + F D+ L+ D + + A+L+ +P
Sbjct: 934 QVAVAGRAGDALRALHQAVRAGA-PF--DVALI--DLRMPDPNGLQLARLIKQEPE---I 985
Query: 788 KLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847
+ +L+LL +++ ++G FA V KPLR ++ CL +V+ E P
Sbjct: 986 RDTRLVLLTALAKREDYAYLESGDFAGYVT-KPLRHHLVRDCLLRVMGRERPVLEPVSPP 1044
Query: 848 NGSSFHQGLLRG----KKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSP 902
G G+ R ++L+VDDN N++VA G L+K G + A + AL+ L
Sbjct: 1045 VGPDRIPGIGRPAHPEARLLLVDDNPTNQIVARGILEKLGYPKPDIACNGLEALEALSRA 1104
Query: 903 HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962
+D MD QMPEMDGFE R IR+ G A + H+PI+AMTA
Sbjct: 1105 R-YDLVLMDGQMPEMDGFETARLIRR-----------------GEAGVLDPHVPIVAMTA 1146
Query: 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
V+ CL GM+ Y+SKP + L R +A+
Sbjct: 1147 LVMPGDVRRCLDAGMNAYISKPVQPHELSRIIAEHL 1182
>gi|416876418|ref|ZP_11919248.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
gi|334840831|gb|EGM19475.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
Length = 1417
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|313109554|ref|ZP_07795506.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|386056894|ref|YP_005973416.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
gi|386068214|ref|YP_005983518.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
gi|310882008|gb|EFQ40602.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|347303200|gb|AEO73314.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
gi|348036773|dbj|BAK92133.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
Length = 1417
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|218889603|ref|YP_002438467.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|218769826|emb|CAW25586.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
Length = 1417
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 190/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMA---EGHRYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|420137563|ref|ZP_14645532.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|403249698|gb|EJY63185.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
Length = 1417
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 85/136 (62%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGAKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|421168080|ref|ZP_15626195.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC 700888]
gi|404531812|gb|EKA41750.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC 700888]
Length = 1417
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|432890023|ref|ZP_20103069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE165]
gi|431432897|gb|ELH14573.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE165]
Length = 918
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 156/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|254242797|ref|ZP_04936119.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192]
gi|355639212|ref|ZP_09051014.1| hypothetical protein HMPREF1030_00100 [Pseudomonas sp. 2_1_26]
gi|126196175|gb|EAZ60238.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192]
gi|354832067|gb|EHF16068.1| hypothetical protein HMPREF1030_00100 [Pseudomonas sp. 2_1_26]
Length = 1417
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|116052146|ref|YP_789010.1| sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14]
gi|115587367|gb|ABJ13382.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 1417
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|296387332|ref|ZP_06876831.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PAb1]
gi|421172620|ref|ZP_15630386.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|404537554|gb|EKA47150.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
Length = 1417
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M605]
gi|386620350|ref|YP_006139930.1| BarA sensory histidine kinase [Escherichia coli NA114]
gi|387830630|ref|YP_003350567.1| two-component sensor kinase [Escherichia coli SE15]
gi|417663339|ref|ZP_12312919.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
gi|432398701|ref|ZP_19641479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE25]
gi|432407829|ref|ZP_19650535.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE28]
gi|432423087|ref|ZP_19665629.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE178]
gi|432501226|ref|ZP_19742981.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE216]
gi|432559949|ref|ZP_19796616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE49]
gi|432695553|ref|ZP_19930749.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE162]
gi|432707017|ref|ZP_19942097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE6]
gi|432724221|ref|ZP_19959137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE17]
gi|432728803|ref|ZP_19963679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE18]
gi|432742493|ref|ZP_19977210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE23]
gi|432920781|ref|ZP_20124370.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE173]
gi|432928465|ref|ZP_20129585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE175]
gi|432982113|ref|ZP_20170886.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE211]
gi|432991852|ref|ZP_20180515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE217]
gi|433097555|ref|ZP_20283736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE139]
gi|433106999|ref|ZP_20292969.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE148]
gi|433111988|ref|ZP_20297847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE150]
gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M605]
gi|333970851|gb|AEG37656.1| BarA sensory histidine kinase [Escherichia coli NA114]
gi|430914279|gb|ELC35382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE25]
gi|430928760|gb|ELC49306.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE28]
gi|430943360|gb|ELC63478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE178]
gi|431027611|gb|ELD40673.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE216]
gi|431090150|gb|ELD95923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE49]
gi|431232982|gb|ELF28584.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE162]
gi|431256962|gb|ELF49896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE6]
gi|431264475|gb|ELF56189.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE17]
gi|431272368|gb|ELF63475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE18]
gi|431282726|gb|ELF73605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE23]
gi|431440069|gb|ELH21399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE173]
gi|431442452|gb|ELH23541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE175]
gi|431490237|gb|ELH69854.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE211]
gi|431493994|gb|ELH73585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE217]
gi|431614532|gb|ELI83685.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE139]
gi|431625912|gb|ELI94469.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE148]
gi|431627024|gb|ELI95436.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE150]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 156/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|421151940|ref|ZP_15611534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC 14886]
gi|404526299|gb|EKA36524.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC 14886]
Length = 1417
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|451984811|ref|ZP_21933051.1| Probable sensor/response regulator hybrid [Pseudomonas aeruginosa
18A]
gi|451757539|emb|CCQ85574.1| Probable sensor/response regulator hybrid [Pseudomonas aeruginosa
18A]
Length = 1417
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 189/399 (47%), Gaps = 54/399 (13%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP-----PGF-KGLKAVVVDEKPVRA 715
S P GS F F D+ + D P PG + L+ +V D+ V
Sbjct: 975 ESAPGSGSRFWF-------------DLDLDVAHDQPLRAACPGAGEPLRLLVADDNLVAG 1021
Query: 716 AVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNA 775
+ + + LG S +A + + + + D++L++ W + G +A
Sbjct: 1022 ELLERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSA 1075
Query: 776 QLLDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQ 832
L + G + P ++++ T ++ A+ A F D + KP+ +A +
Sbjct: 1076 AQLIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLH 1132
Query: 833 VLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASA 892
L E A P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1133 ALHGEQGAPA--NPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGG 1190
Query: 893 KAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1191 LAGVQQVLEASVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA-- 1232
Query: 952 ELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ A + CL GM+ +V+KP ++E L
Sbjct: 1233 --GLPILAMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 388 TVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447
+SHEIRTPMN +LGML L TDL+ QRDY A +L+ L+N++LD +KIEA K
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVG 507
L LE + F L ++ D+ + S +K +E+ + ++P V+GD R +QI+ NL G
Sbjct: 831 LVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 508 NSVKFTERGHIFVKVH 523
N++KFT RGH+ V +
Sbjct: 891 NALKFTARGHVLVSLR 906
>gi|421572828|ref|ZP_16018473.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402514904|gb|EJW22319.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
Length = 736
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 101 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 160
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 161 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 220
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 221 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 268
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 269 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 300
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 301 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 330
Query: 672 SF 673
F
Sbjct: 331 WF 332
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 261 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 312
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 313 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 356
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 357 LAYIEPNATAAQCTLDLLSD-----TPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLT 411
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 412 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 470
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 471 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 518
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 519 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 560
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 561 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 602
>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375115806|ref|ZP_09760976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYVEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|376002915|ref|ZP_09780735.1| putative two-component sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
gi|375328680|emb|CCE16488.1| putative two-component sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
Length = 1242
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 196/404 (48%), Gaps = 46/404 (11%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
+TL V+DTGIGIP AQERVF F Q D+ST+R +GGTG+GL I K L+E+M G+I
Sbjct: 734 LTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGL 793
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
S GSTF FT F K F +LP LK +VVD +Y
Sbjct: 794 ESVVDQGSTFWFTLPFSISKTASF--------PNLPDTLTKLKILVVDANASVRQSVRYL 845
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQP-DIILVEKDCWISGEDSGFNAQLLDW 780
+ G+ ++ +S + A S ++ ++ QP ++ + +++ I G+ + A ++
Sbjct: 846 IQSWGMELQEASDPEMALSKLRDAAHNN----QPFNLAIFDQNLLIYGKQNL--AAVIQN 899
Query: 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE--- 837
+P + KL+L+ + + G A + ++KP+RAS + L ++ E
Sbjct: 900 EP---LMSATKLVLMTSMRLLSSVEDLLDDGLAKSYLIKPVRASRLFDALLTAMANEITV 956
Query: 838 --NKRQAGRGV--PNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAK 893
+ ++GR N S+ L K+L+ +D+ +N+ V L G + A + +
Sbjct: 957 NLAEFRSGRDSLGDNSSTLSPAGL-DLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGE 1015
Query: 894 AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
L+ L H +D FMD QMP++DG+ T +R+ E ++
Sbjct: 1016 QVLELLNDRH-YDLVFMDCQMPKLDGYATTEELRKREG-------------------NDR 1055
Query: 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
H ++A+TA + + +CL GMD Y+SKP +E L +L +
Sbjct: 1056 HTTVIALTAHAMPSDRQKCLSAGMDDYISKPITQEELAFKLQTW 1099
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 102/141 (72%)
Query: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRA 441
KSQFLA +SHEIRTPMNG+LGM LLL T+L + Q+D+ Q + L+++IN++LD +
Sbjct: 582 KSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTSADHLLSIINDILDFS 641
Query: 442 KIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI 501
K+EA+++ELE + F+L L++++ L + ++ NKGIELA V VP ++ GDPGR RQ+
Sbjct: 642 KLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQV 701
Query: 502 ITNLVGNSVKFTERGHIFVKV 522
+ NL+ N +KFT G + ++V
Sbjct: 702 LLNLMSNGIKFTPAGEVTLRV 722
>gi|437153270|ref|ZP_20690376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435141021|gb|ELN27963.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 160/405 (39%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----IHLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYIEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNISKD-ECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA + +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHEQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|432802971|ref|ZP_20036927.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE84]
gi|431347500|gb|ELG34388.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE84]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 156/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPYQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|417086226|ref|ZP_11953462.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
gi|355350751|gb|EHF99947.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 156/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|354584519|ref|ZP_09003413.1| histidine kinase [Paenibacillus lactis 154]
gi|353194040|gb|EHB59543.1| histidine kinase [Paenibacillus lactis 154]
Length = 560
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 3/161 (1%)
Query: 369 QEL---KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQI 425
QEL K AE A AK++FLA +SHEIRTPMNG++GM+ LL+DTDL QR+YA +
Sbjct: 153 QELIKAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDTDLEEEQREYATIIRK 212
Query: 426 CGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSD 485
+L+A+IN++LD +K+E+ K+ELE F+L + + +V LFS ++ K +EL+ ++ D
Sbjct: 213 SADSLVAIINDILDFSKMESGKMELEEYPFDLHSCVQEVFGLFSGEAAKKSLELSYYIED 272
Query: 486 KVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526
+P V GD GR RQ++ NLV N+VKFT G +++ V L +
Sbjct: 273 SIPSMVFGDMGRLRQVLINLVSNAVKFTNEGGVYLVVSLTQ 313
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 24/265 (9%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
++++ + G + +TL ++DTGIGI +R+F PF Q DSS +R YGGTG+GL+I
Sbjct: 308 VVSLTQAEG--DQLTLQFTLKDTGIGISAEKMDRLFQPFSQLDSSMTRRYGGTGLGLAIC 365
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFED-----IKQSKSEDLPPGFKGL 703
K LV++M GQI S+ + G+TF FT C ED +Q S+ G
Sbjct: 366 KSLVQMMGGQIVVESKEEQGATFVFTI----CVRAHEEDNHRLREEQQNSKYRVRGVNQP 421
Query: 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKD 763
+ ++VD+ P+ + L ++G+ M+ + K A A + TS D+I ++
Sbjct: 422 RIMIVDDHPINRKLMDSMLGKMGLRADMAENGKQAVDLAASSKTSY------DLIFMDLQ 475
Query: 764 CWI-SGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLR 822
+ G ++ + L + + P L+ + N+ + + G D + KP++
Sbjct: 476 MPVMDGLEAARQIRGLCSEEDR-----PVLVAMTANVMDGIQKRCQEAGM-DEYLSKPVK 529
Query: 823 ASMIAACLQQVLSTENKRQAGRGVP 847
S + L + + E++ Q P
Sbjct: 530 FSCVEQLLSRYIPWESEDQGMHASP 554
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 22/126 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD-KLQSPHCFDACFMDIQMPEMDG 919
+I++VDD+ +NR + L K G + A + K A+D S +D FMD+QMP MDG
Sbjct: 422 RIMIVDDHPINRKLMDSMLGKMGLRADMAENGKQAVDLAASSKTSYDLIFMDLQMPVMDG 481
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL-AMTADVIHATFDECLKCGMD 978
EA R+IR + S+ + P+L AMTA+V+ C + GMD
Sbjct: 482 LEAARQIRGLCSEEDR--------------------PVLVAMTANVMDGIQKRCQEAGMD 521
Query: 979 GYVSKP 984
Y+SKP
Sbjct: 522 EYLSKP 527
>gi|336309925|ref|ZP_08564898.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
gi|335866485|gb|EGM71463.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
Length = 1765
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 199/425 (46%), Gaps = 91/425 (21%)
Query: 599 SEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQ 658
++DVTL V D+GIG+ Q ++F F QAD+ST+R YGGTG+GL+I K LVELM G
Sbjct: 1187 NDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGS 1246
Query: 659 ISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPG--FKGLKAVVVDEKPVRAA 716
I S+ GSTF FT ++ S + L G +G+ +VVD+
Sbjct: 1247 IGVESQFGHGSTFYFTV-----------KLQISSGQKLVIGQELEGMSVLVVDDNATARD 1295
Query: 717 VTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQ 776
+ + L +G +V T ++G + Q D +
Sbjct: 1296 IMRTTLEGMGFLV----------DTVRSGDEAVNRCTQRD----------------YAVA 1329
Query: 777 LLDWK-PN-----------GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS 824
L+DWK PN P++++++ + +++ + + G A I KP+ AS
Sbjct: 1330 LIDWKMPNLDGLDTARQILQQAKTPPRILMVSAHANQEFLTQIEQLGLA-GYISKPISAS 1388
Query: 825 MIAACLQQVLSTENKRQAGR-GVPNGSSFHQGL-------LRGKKILVVDDNGVNRMVAA 876
+ + L GR G+ ++ L L+GK+IL+V+DN +N VA
Sbjct: 1389 RLLDGIMNAL--------GRAGILPVRRHNEALDPQLLLPLKGKRILLVEDNEMNLEVAT 1440
Query: 877 GALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936
L++ G + A + + ALDKL FD MD QMP MDG++AT+ +RQ
Sbjct: 1441 EFLEQVGIILSIATNGQIALDKLMQ-QSFDLVLMDCQMPVMDGYQATKALRQ-------- 1491
Query: 937 MMNGGSSVDGTAKRDEL-HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995
R EL LP++AMTA+ + + C++ GM+ +++KP E LY+ L
Sbjct: 1492 -------------RPELAELPVIAMTANAMAGDREMCIRAGMNDHIAKPIEVNILYQTLL 1538
Query: 996 KFFKS 1000
K+ +
Sbjct: 1539 KYLAA 1543
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 107/156 (68%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K A+AA AK FLA +SHEIRTPMN I+GM L L T+L Q++Y + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1089
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
++IN++LD +KIEA KL++E+V F L +L+D+ +FSEK+ +K +EL V+ VP +
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527
GD R Q++ NL+ N++KFTERG + + ++L E+
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQ 1185
>gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040]
gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040]
Length = 761
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 3/160 (1%)
Query: 366 HKMQELKV---RAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQT 422
H +EL+ RAEAA+ AKS FLA +SHEIRTPMNG++GM LL DT L+ QR YA T
Sbjct: 197 HYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDTTLTEEQRLYANT 256
Query: 423 AQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVF 482
+ G+AL+ +IN+VLD +KIEA KL L F+L A + +V+ L +R+KG+ L V
Sbjct: 257 IKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEACMHEVVMLLQANARDKGLTLLVD 316
Query: 483 VSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKV 522
+P +GDPGR RQI+TNL+GN++KFT GH+ +V
Sbjct: 317 YDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNEGHVTARV 356
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 117/435 (26%), Positives = 185/435 (42%), Gaps = 74/435 (17%)
Query: 600 EDVTLM--VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
ED T+M + +ED+GIGIP + +F F Q + T+R + GTG+GL+I++ L++LM G
Sbjct: 363 EDNTVMLHISIEDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKLMDG 422
Query: 658 QISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAV 717
+I S+ GS F F V D Q + +LP + ++VD+ + +
Sbjct: 423 EIWVESQLGKGSCFGFRLPL------VVADGSQVNAPELPENLNCV--MIVDDMDINREI 474
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
L RL + V +S +A D +I LV D + G D A+
Sbjct: 475 LNRQLQRLDLKVVAVTSGAEAL-----------DVLNAEIDLVITDRNLPGMDGLKLARS 523
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPL------RA-------S 824
L H +LL ++ D D A + FA ++ KP+ RA S
Sbjct: 524 L------HHASPQTPVLLLSSDPADGSDPALSDLFA-GILQKPIPRGALFRALSKLDAPS 576
Query: 825 MIAACLQQVLSTENKRQAGRGVP-------NGSSFHQGL-----LRGKKILVVDDNGVNR 872
+ A Q V + P G F G LR ++L +DN N+
Sbjct: 577 VHPARPQDVPPAAPAIEPPSDAPVQVPAPEAGVDFGSGATIASDLRRMRVLAAEDNRTNQ 636
Query: 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932
+V +K + A + A++ QS D FMDI MP+MDG EAT+ IR++E
Sbjct: 637 LVFRKMVKDMNIDLRFAGNGLEAVELYQS-FKPDMIFMDISMPKMDGKEATQAIRELE-- 693
Query: 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR 992
K + + I+A+TA + + L G+D Y++KP + ++
Sbjct: 694 ----------------KENGRRVQIVALTAHAMDGDSEGILAAGLDDYLTKPLRKSVIHD 737
Query: 993 ELAKFFKS--KPLSG 1005
+ K + PL G
Sbjct: 738 RIMKNMPTAVAPLQG 752
>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
gi|222157472|ref|YP_002557611.1| Signal transduction histidine-protein kinase barA [Escherichia coli
LF82]
gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA206]
gi|386600777|ref|YP_006102283.1| sensor histidine kinase/response regulator BarA [Escherichia coli
IHE3034]
gi|386603161|ref|YP_006109461.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
gi|387618052|ref|YP_006121074.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
NRG 857C]
gi|416336791|ref|ZP_11673261.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
gi|417285892|ref|ZP_12073183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07793]
gi|419915998|ref|ZP_14434329.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
gi|419944637|ref|ZP_14461112.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
gi|422356880|ref|ZP_16437553.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|422369450|ref|ZP_16449850.1| response regulator receiver domain protein [Escherichia coli MS
16-3]
gi|422750197|ref|ZP_16804108.1| hsp90-like protein [Escherichia coli H252]
gi|422754447|ref|ZP_16808273.1| hsp90-like protein [Escherichia coli H263]
gi|422840772|ref|ZP_16888742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H397]
gi|432359100|ref|ZP_19602318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE4]
gi|432363949|ref|ZP_19607107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE5]
gi|432442206|ref|ZP_19684544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE189]
gi|432447321|ref|ZP_19689619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE191]
gi|432554824|ref|ZP_19791543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE47]
gi|432574958|ref|ZP_19811433.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE55]
gi|432589087|ref|ZP_19825441.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE58]
gi|432598932|ref|ZP_19835203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE62]
gi|432617948|ref|ZP_19854058.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE75]
gi|432755637|ref|ZP_19990183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE22]
gi|432779717|ref|ZP_20013939.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE59]
gi|432788709|ref|ZP_20022837.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE65]
gi|432822145|ref|ZP_20055835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE118]
gi|432823655|ref|ZP_20057325.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE123]
gi|432899892|ref|ZP_20110402.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE192]
gi|433006236|ref|ZP_20194662.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE227]
gi|433008904|ref|ZP_20197318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE229]
gi|433015021|ref|ZP_20203360.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE104]
gi|433024604|ref|ZP_20212583.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE106]
gi|433029675|ref|ZP_20217529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE109]
gi|433154854|ref|ZP_20339790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE176]
gi|433164739|ref|ZP_20349472.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE179]
gi|433169726|ref|ZP_20354349.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE180]
gi|433325456|ref|ZP_20402550.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli UTI89]
gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
[Escherichia coli APEC O1]
gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli S88]
gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli ED1a]
gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
LF82]
gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
IHE3034]
gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
NRG 857C]
gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS
16-3]
gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA206]
gi|371605783|gb|EHN94391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H397]
gi|386251133|gb|EII97300.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07793]
gi|388382398|gb|EIL44253.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
gi|388418028|gb|EIL77850.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
gi|430875621|gb|ELB99156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE4]
gi|430884405|gb|ELC07345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE5]
gi|430965454|gb|ELC82875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE189]
gi|430972167|gb|ELC89165.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE191]
gi|431082175|gb|ELD88489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE47]
gi|431106488|gb|ELE10696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE55]
gi|431119110|gb|ELE22125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE58]
gi|431128802|gb|ELE30978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE62]
gi|431152840|gb|ELE53766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE75]
gi|431300941|gb|ELF90488.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE22]
gi|431325632|gb|ELG13015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE59]
gi|431335709|gb|ELG22838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE65]
gi|431367214|gb|ELG53700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE118]
gi|431378180|gb|ELG63171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE123]
gi|431425032|gb|ELH07107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE192]
gi|431512604|gb|ELH90695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE227]
gi|431522643|gb|ELH99875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE229]
gi|431529338|gb|ELI06040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE104]
gi|431533828|gb|ELI10321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE106]
gi|431542224|gb|ELI17463.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE109]
gi|431672880|gb|ELJ39114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE176]
gi|431685570|gb|ELJ51140.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE179]
gi|431686002|gb|ELJ51568.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE180]
gi|432346273|gb|ELL40759.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 156/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR+ LD+V++L + S +KG+EL + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGF 920
++ VDDN N + L+ VE S A+++ Q P FD MDIQMP+MDG
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMPDMDGI 727
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
A I Q+ + P++A+TA + ++ L GM Y
Sbjct: 728 RACELIHQLPHQQQT--------------------PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 981 VSKPFEEENLYRELAKFFKSKPLSG 1005
++KP EEE L+ L ++ KP SG
Sbjct: 768 LAKPIEEERLHNLLLRY---KPGSG 789
>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYVEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|337277775|ref|YP_004617246.1| atypical unorthodox histidine kinase [Ramlibacter tataouinensis
TTB310]
gi|334728851|gb|AEG91227.1| candidate histidine kinase, atypical unorthodox [Ramlibacter
tataouinensis TTB310]
Length = 1258
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 202/423 (47%), Gaps = 61/423 (14%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
+ ++ GG TL + V DTGIGI Q+R+F F QA +STSR +GGTG+GLSI +
Sbjct: 762 LRLLGQGGGF--ATLELAVRDTGIGIAPGDQKRLFADFSQAKASTSREFGGTGLGLSICR 819
Query: 650 CLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP--PGFKGL---- 703
L LM ++ S P GS FS + + + +D+ LP P G+
Sbjct: 820 RLAALMGSELRLESEPGRGSRFSM-----RLELPIAQDL-------LPQLPAADGVSRVR 867
Query: 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKD 763
+ ++VD+ A+ G V + + ++A + L S +P + D
Sbjct: 868 RVLIVDDNEAARALLSTAAQGQGWQVDTAGNGQEALA-----LLESVRPQEPPYDAIFLD 922
Query: 764 CWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATN----ISKDECDKAKAGGFADTVIMK 819
+ G D ++ + P H P L+++ +S+ D+ D ++K
Sbjct: 923 WRMPGMDGWEMSRRIRAAPQTH--GAPLLVMITAYGREMLSQRSNDEQ---ALLDGFLVK 977
Query: 820 PLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
P+ +M+A Q V+ + QA + P G+ L G +IL+V+DN N+ VA L
Sbjct: 978 PVTGAMLA---QAVVKARGRTQAPQADPQGADKP---LAGLRILLVEDNHNNQQVACELL 1031
Query: 880 KKFGATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938
++ GATV A + A+D + +P F MD+QMP MDG EATR IR+ +
Sbjct: 1032 EREGATVSVAVHGREAVDMVAAAPGGFHVALMDVQMPVMDGLEATREIRRGPA------- 1084
Query: 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
GG+ LPI+AMTA+ + + C + GMDGYV+KPF ++L EL +
Sbjct: 1085 -GGA------------LPIVAMTANAMDSDRQACRQAGMDGYVAKPFLIDDLVAELLQHT 1131
Query: 999 KSK 1001
+ +
Sbjct: 1132 RHR 1134
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 106/161 (65%)
Query: 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTA 423
D ++++ + A A +K++FL+++SHE+RTPMN +LGML LL T+L++ QRDY +
Sbjct: 604 DVSELRQARDAALEASQSKTRFLSSMSHELRTPMNAVLGMLTLLRGTELNTRQRDYVDKS 663
Query: 424 QICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483
++L++L+N++LD AKIEA K+ L+A F + ++ D+ + S K +++ +
Sbjct: 664 DSAARSLLSLLNDILDLAKIEAGKMTLDARAFAVEELMQDLAFILSANVGRKELDVLFDI 723
Query: 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHL 524
VP ++GD R RQI+ NL GN++KFT++G + V++ L
Sbjct: 724 DPAVPAILVGDDMRLRQILINLGGNAIKFTQQGEVVVELRL 764
>gi|437619273|ref|ZP_20803425.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437808394|ref|ZP_20840099.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435258553|gb|ELO37813.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435300062|gb|ELO76157.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
Length = 763
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 128 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 187
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 188 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 247
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 248 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 295
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 296 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 327
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 328 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 357
Query: 672 SF 673
F
Sbjct: 358 WF 359
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 161/405 (39%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 288 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 339
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F DL P V+ + P A +
Sbjct: 340 ----EMGGDISFHSQPNRGSTFWFH-----IHLDLNPN-------VIIDGPSTACLAGKR 383
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 384 LAYIEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 438
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 439 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 497
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 498 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 545
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 546 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 587
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 588 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 629
>gi|423125482|ref|ZP_17113161.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5250]
gi|376399088|gb|EHT11709.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5250]
Length = 917
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 160/302 (52%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L TDL++TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + + +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +QIITNL+GN++KFTE G+I V V +R + + + E ++
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDVLVE--QRAISNSRVQIEVQIH---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV+ M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 168/412 (40%), Gaps = 79/412 (19%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV+
Sbjct: 443 VQIEVQIHDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVK-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F S DL P V D P + +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----ISLDLNPN------AVPDSVPTQCLAGKKL 539
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781
S+++ ++T + S PD D ++G + D
Sbjct: 540 AYIEANAAAAQSTMELLATTPLEVVYSPTMTALPD---AHYDILLAG----IPVSIRDL- 591
Query: 782 PNGHVFKLPKLILLATNI-------SKDECDKAKAGGFADTVIMKPLRAS-----MIAAC 829
+ H KL + LA ++ ++ + + G A ++KPL ++ + A+C
Sbjct: 592 -SQHRDKLARACKLADHLVLALPCHAQVSAETLRQDGIA-ACLLKPLTSTRLLPALTASC 649
Query: 830 LQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECA 889
Q +T R + +P ++ VDDN N + L+ V
Sbjct: 650 QAQP-TTLPPRADSKKLP------------MTVMAVDDNPANLKLIGALLEDLVQHVILC 696
Query: 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
S + A+++ + D MDIQMPEMDG A I Q+ +
Sbjct: 697 DSGQHAVEQARETQQ-DLILMDIQMPEMDGIRACELIHQLPHQQQT-------------- 741
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001
P++A+TA + ++ LK GM+ Y++KP EE+ L+ L ++ K
Sbjct: 742 ------PVIAVTAHALEGQREKLLKAGMNDYLAKPIEEDKLHSLLLRYQPGK 787
>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYVEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDASKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|152987294|ref|YP_001346367.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
gi|150962452|gb|ABR84477.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
Length = 1418
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 188/401 (46%), Gaps = 58/401 (14%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V L V V DTGIGI Q+R+F F QA++STSR +GGTG+GL I K LV+LM G++
Sbjct: 915 VGLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGRLQV 974
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKG----LKAVVVDEKPVRAAV 717
S P GS F F D+ ++ E L G L+ +V D+ + +
Sbjct: 975 ESSPGSGSRFWFDL-----------DLDVARGEPLRAACPGVGEPLRLLVADDNLIAGEL 1023
Query: 718 TQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777
+ + LG S +A + + + + D++L++ W + G +A
Sbjct: 1024 LERTVGALGWRADCVGSGSEAVARVQAAMAEGR---RYDVVLMD---WRMPDLDGLSAAQ 1077
Query: 778 LDWKPNGHVFKLPKLILLATNISKDECDKAK---AGGFADTVIMKPLRASMIAACLQQVL 834
L + G + P ++++ T ++ A+ A F D + KP+ +A + L
Sbjct: 1078 LIRQLQGDLP--PPMVIMITAYGREVLADARDHSAPPFVD-FLTKPVTPKQLADSVLHAL 1134
Query: 835 STENKRQAGRGVPNG----SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAA 890
E G P LRG ++LVV+DN +NR VAA L GA V A
Sbjct: 1135 HGEQ------GAPANPPPRPQERPQRLRGVRLLVVEDNALNRQVAAELLSSEGARVSLAD 1188
Query: 891 SAKAALDK-LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949
A + + L++ FDA MD+QMP++DG EATRRIR DG
Sbjct: 1189 GGLAGVQQVLEAGVPFDAVLMDMQMPDIDGLEATRRIR----------------ADGRFA 1232
Query: 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990
LPILAMTA+ + + CL GMD +V+KP ++E L
Sbjct: 1233 ----GLPILAMTANASLSDREACLAAGMDDHVAKPIDKERL 1269
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 353 GAAIHIVKVEDDFHKMQELKVRAEAAD-------VAKSQFLATVSHEIRTPMNGILGMLA 405
G + + + D Q+L+ R A AKS FLA +SHEIRTPMN +LGML
Sbjct: 729 GTPLQVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQ 788
Query: 406 LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVL 465
L TDL+ QRDY A +L+ L+N++LD +KIEA KL LE F L ++ D+
Sbjct: 789 LARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGKLLLEMHPFELEPLMQDLA 848
Query: 466 SLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523
+ S +K +E+ + ++P V+GD R +QI+ NL GN++KFT GH+ V +
Sbjct: 849 VVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAGNALKFTAHGHVLVSLR 906
>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYVEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|427800133|ref|ZP_18967937.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|414063705|gb|EKT44802.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
Length = 810
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYVEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|397696447|ref|YP_006534330.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida DOT-T1E]
gi|397333177|gb|AFO49536.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida DOT-T1E]
Length = 923
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQF 385
+ STPW V GLL+ + + ++ ++ ++A AK++F
Sbjct: 345 RTSTPWLLCILLGLTVVSGLLLNL---AVSERLRRISEERFSASRALAASDAEINAKAEF 401
Query: 386 LATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
LA +SHEIRTPMNG+LGM LLL T LS QRDY QT G L+ LINE+LD +K+E+
Sbjct: 402 LAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLES 461
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
R++EL+ V F+L A+++D L++F K+ + IEL F +VP + GDP R RQ +++L
Sbjct: 462 RQIELDDVQFDLNALIEDCLNIFRAKAEQQNIELISFTQPQVPRVISGDPTRLRQALSSL 521
Query: 506 VGNSVKFTERGHIFVKVHLAER 527
+ N++K T++G I + V L +R
Sbjct: 522 LENALKNTDQGEILLVVALDQR 543
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 94/419 (22%), Positives = 176/419 (42%), Gaps = 52/419 (12%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+ ++A + E L + V+D+G +P + +E + + + S + G +GL I+
Sbjct: 534 ILLVVALDQRGEVPRLRIAVQDSGEPLPAADREALLQAELHSHHFLSSNKLGGHLGLVIA 593
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L+ LM+G+ S +G+T T + ++Q + DL + + +VV
Sbjct: 594 KQLIGLMQGEFGIKSNTGMGNTLWLTLPLDPSR------LEQPPA-DLDSPLRDARVLVV 646
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WIS 767
D+ V + G+ V S K+A + + D F D +L++++ ++
Sbjct: 647 DDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTK-AHLRDYF--DAVLLDQNMPGMT 703
Query: 768 G--------EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMK 819
G ED N + L+++ T IS ++ K
Sbjct: 704 GMQLAAKIKEDPSLNHDI--------------LVVMLTGISNAPSKVIARNAGVKRILAK 749
Query: 820 PLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
P+ + L + L+ + QA G L ++LV +DN ++ V L
Sbjct: 750 PVAGYTLKTTLAEELAQRGREQAIPASLPGIPQALDLPGDFRVLVAEDNSISTKVIRSML 809
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
K + A + + AL +++ H +D MD +MP +DGF AT+++R E+ Q
Sbjct: 810 GKLNLKPDTACNGEEALQAMKAQH-YDLVLMDCEMPILDGFSATQQLRAWEADNQRQ--- 865
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
P++A+TA ++ + GMDG+++KP E L REL +++
Sbjct: 866 --------------RTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQL-RELIQYW 909
>gi|421383353|ref|ZP_15833391.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|395995587|gb|EJI04651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 161/405 (39%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----IHLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYIEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|148549901|ref|YP_001270003.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida F1]
gi|395445662|ref|YP_006385915.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida ND6]
gi|148513959|gb|ABQ80819.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida F1]
gi|388559659|gb|AFK68800.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida ND6]
Length = 923
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQF 385
+ STPW V GLL+ + + ++ ++ ++A AK++F
Sbjct: 345 RTSTPWLLCILLGLTVVSGLLLNL---AVSERLRRISEERFSASRALAASDAEINAKAEF 401
Query: 386 LATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
LA +SHEIRTPMNG+LGM LLL T LS QRDY QT G L+ LINE+LD +K+E+
Sbjct: 402 LAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLES 461
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
R++EL+ V F+L A+++D L++F K+ + IEL F +VP + GDP R RQ +++L
Sbjct: 462 RQIELDDVQFDLNALIEDCLNIFRAKAEQQNIELISFTQPQVPRVISGDPTRLRQALSSL 521
Query: 506 VGNSVKFTERGHIFVKVHLAER 527
+ N++K T++G I + V L +R
Sbjct: 522 LENALKNTDQGEILLVVALDQR 543
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 94/419 (22%), Positives = 176/419 (42%), Gaps = 52/419 (12%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+ ++A + E L + V+D+G +P + +E + + + S + G +GL I+
Sbjct: 534 ILLVVALDQRGEVPRLRIAVQDSGEPLPAADREALLQAELHSHHFLSSNKLGGHLGLVIA 593
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L+ LM+G+ S +G+T T + ++Q + DL + + +VV
Sbjct: 594 KQLIGLMQGEFGIKSNTGMGNTLWLTLPLDPSR------LEQPPA-DLDSPLRDARVLVV 646
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WIS 767
D+ V + G+ V S K+A + + D F D +L++++ ++
Sbjct: 647 DDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTK-AHLRDYF--DAVLLDQNMPGMT 703
Query: 768 G--------EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMK 819
G ED N + L+++ T IS ++ K
Sbjct: 704 GMQLAAKIKEDPSLNHDI--------------LVVMLTGISNAPSKVIARNAGVKRILAK 749
Query: 820 PLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
P+ + L + L+ + QA G L ++LV +DN ++ V L
Sbjct: 750 PVAGYTLKTTLAEELAQRGREQAIPASLPGIPQALDLPGDFRVLVAEDNSISTKVIRSML 809
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
K + A + + AL +++ H +D MD +MP +DGF AT+++R E+ Q
Sbjct: 810 GKLNLKPDTACNGEEALQAMKAQH-YDLVLMDCEMPILDGFSATQQLRAWEADNQRQ--- 865
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
P++A+TA ++ + GMDG+++KP E L REL +++
Sbjct: 866 --------------RTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQL-RELIQYW 909
>gi|421523793|ref|ZP_15970422.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida LS46]
gi|402752779|gb|EJX13284.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
putida LS46]
Length = 923
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 326 KASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQF 385
+ STPW V GLL+ + + ++ ++ ++A AK++F
Sbjct: 345 RTSTPWLLCILLGLTVVSGLLLNL---AVSERLRRISEERFSASRALAASDAEINAKAEF 401
Query: 386 LATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445
LA +SHEIRTPMNG+LGM LLL T LS QRDY QT G L+ LINE+LD +K+E+
Sbjct: 402 LAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLES 461
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
R++EL+ V F+L A+++D L++F K+ + IEL F +VP + GDP R RQ +++L
Sbjct: 462 RQIELDDVQFDLNALIEDCLNIFRAKAEQQNIELISFTQPQVPRVISGDPTRLRQALSSL 521
Query: 506 VGNSVKFTERGHIFVKVHLAER 527
+ N++K T++G I + V L +R
Sbjct: 522 LENALKNTDQGEILLVVALDQR 543
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/419 (22%), Positives = 176/419 (42%), Gaps = 52/419 (12%)
Query: 589 IINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSIS 648
I+ ++A + E L + V+D+G +P + +E + + + S + G +GL I+
Sbjct: 534 ILLVVALDQRGEVPRLRIAVQDSGEPLPAADREALLQAELHSHHFLSSNKLGGHLGLVIA 593
Query: 649 KCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVV 708
K L+ LM+G+ S +G+T T + ++Q + DL + + +VV
Sbjct: 594 KQLIGLMQGEFGIKSNTGMGNTLWLTLPLDPSR------LEQPPA-DLDSPLRDARVLVV 646
Query: 709 DEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC-WIS 767
D+ V + G+ V S K+A + + D F D +L++++ ++
Sbjct: 647 DDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTK-AHLRDYF--DAVLLDQNMPGMT 703
Query: 768 G--------EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMK 819
G ED N + L+++ T IS ++ K
Sbjct: 704 GMQLAAKIKEDPSLNHDI--------------LVVMLTGISNAPSKVIARNAGVKRILAK 749
Query: 820 PLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879
P+ + L + L+ + QA G L ++LV +DN ++ V L
Sbjct: 750 PVAGYTLKTTLAEELAQRGREQAIPASLPGIPQALDLPSDFRVLVAEDNSISTKVIRSML 809
Query: 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939
K + A + + AL +++ H +D MD +MP +DGF AT+++R E+ Q
Sbjct: 810 GKLNLKPDTACNGEEALQAMKAQH-YDLVLMDCEMPILDGFSATQQLRAWEADNQRQ--- 865
Query: 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998
P++A+TA ++ + GMDG+++KP E L REL +++
Sbjct: 866 --------------RTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQL-RELIQYW 909
>gi|399005112|ref|ZP_10707709.1| histidine kinase with 7TM domain, partial [Pseudomonas sp. GM17]
gi|398127473|gb|EJM16882.1| histidine kinase with 7TM domain, partial [Pseudomonas sp. GM17]
Length = 620
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 124/196 (63%), Gaps = 10/196 (5%)
Query: 341 FVIGLLVGYILYGAAIHIVK-------VEDDFHKMQELKVRAEAADV-AKSQFLATVSHE 392
+I LLV L G A+ I E++F ++L A A+V AK++FLA +SHE
Sbjct: 351 LIITLLVTMCLSGLAMSIALGERQRSITENEFSVSRDLA--ASNAEVNAKAEFLAKISHE 408
Query: 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452
IRTPMNG+LGM LLL T LS QRDY QT G L+ LINE+LD +K+E+ ++EL+
Sbjct: 409 IRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLESGQIELDD 468
Query: 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKF 512
V F+L A+++D LS+F K+ + +EL F+ +VP + GDP R RQ + +L+ N++K
Sbjct: 469 VQFDLNALIEDCLSIFRAKAEQQNVELISFIQPQVPRVISGDPTRLRQAMLSLLENALKK 528
Query: 513 TERGHIFVKVHLAERT 528
T+ G + V V L ERT
Sbjct: 529 TDEGEVLVVVALDERT 544
>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYVEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375120429|ref|ZP_09765596.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|375124766|ref|ZP_09769930.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|421360545|ref|ZP_15810821.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421363319|ref|ZP_15813561.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369643|ref|ZP_15819818.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421374086|ref|ZP_15824217.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421378977|ref|ZP_15829056.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421384998|ref|ZP_15835021.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421389358|ref|ZP_15839341.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421396644|ref|ZP_15846569.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399423|ref|ZP_15849318.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421406086|ref|ZP_15855911.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408385|ref|ZP_15858184.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421414983|ref|ZP_15864719.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417413|ref|ZP_15867123.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420752|ref|ZP_15870428.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421428397|ref|ZP_15878008.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421430839|ref|ZP_15880425.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421435732|ref|ZP_15885268.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421440151|ref|ZP_15889631.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421443790|ref|ZP_15893229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421449260|ref|ZP_15898644.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|436602026|ref|ZP_20513066.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436818420|ref|ZP_20535053.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832643|ref|ZP_20536933.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436853010|ref|ZP_20543035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436861201|ref|ZP_20548385.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867569|ref|ZP_20552723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436872914|ref|ZP_20555796.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436880416|ref|ZP_20560175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891539|ref|ZP_20566239.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436899554|ref|ZP_20570965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436903064|ref|ZP_20573528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436914851|ref|ZP_20579698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919551|ref|ZP_20582332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436928842|ref|ZP_20588048.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436938545|ref|ZP_20593332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436945893|ref|ZP_20597721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436955357|ref|ZP_20602232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436966089|ref|ZP_20606758.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969519|ref|ZP_20608516.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436985293|ref|ZP_20614878.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436993430|ref|ZP_20618223.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437004874|ref|ZP_20622104.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437018709|ref|ZP_20626914.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437027425|ref|ZP_20630314.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437043065|ref|ZP_20636578.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050739|ref|ZP_20640884.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061971|ref|ZP_20647337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066887|ref|ZP_20649949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437073886|ref|ZP_20653328.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437082971|ref|ZP_20658714.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437097712|ref|ZP_20665167.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437110497|ref|ZP_20667843.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437118916|ref|ZP_20670651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437129456|ref|ZP_20675932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437141834|ref|ZP_20683518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437146084|ref|ZP_20685873.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437159927|ref|ZP_20694325.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437169387|ref|ZP_20699780.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437175914|ref|ZP_20703090.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184416|ref|ZP_20708281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437264661|ref|ZP_20719937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437269480|ref|ZP_20722723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437277691|ref|ZP_20727050.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437315792|ref|ZP_20737480.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437417449|ref|ZP_20753868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437463297|ref|ZP_20762979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437480007|ref|ZP_20768255.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437495814|ref|ZP_20772958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437509365|ref|ZP_20776504.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437532862|ref|ZP_20780965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437555663|ref|ZP_20784630.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437580414|ref|ZP_20791817.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437592576|ref|ZP_20795125.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437605158|ref|ZP_20799337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437650084|ref|ZP_20809715.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437655967|ref|ZP_20810563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437679584|ref|ZP_20818074.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437692352|ref|ZP_20821172.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437714186|ref|ZP_20827590.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437729860|ref|ZP_20830992.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437765487|ref|ZP_20835106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|438090977|ref|ZP_20860707.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438101634|ref|ZP_20864461.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438116202|ref|ZP_20870721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438144756|ref|ZP_20875701.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|445128225|ref|ZP_21380117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445145461|ref|ZP_21387423.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445151337|ref|ZP_21390287.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445171253|ref|ZP_21396079.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445204238|ref|ZP_21401228.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445219252|ref|ZP_21402634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445345456|ref|ZP_21418152.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445362071|ref|ZP_21424064.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|395981112|gb|EJH90334.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395981766|gb|EJH90987.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395987780|gb|EJH96942.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395994210|gb|EJI03286.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|395995312|gb|EJI04377.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396009098|gb|EJI18031.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396016917|gb|EJI25783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396018630|gb|EJI27492.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396022314|gb|EJI31128.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396027517|gb|EJI36280.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396027800|gb|EJI36562.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396035018|gb|EJI43699.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396042248|gb|EJI50870.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396043797|gb|EJI52395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396048432|gb|EJI56981.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396054665|gb|EJI63157.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396056144|gb|EJI64620.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396068286|gb|EJI76634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396069421|gb|EJI77759.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396070557|gb|EJI78885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|434938986|gb|ELL45876.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434970964|gb|ELL63525.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434974575|gb|ELL66919.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434981242|gb|ELL73129.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434984355|gb|ELL76095.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434985645|gb|ELL77332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434992721|gb|ELL84160.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434999771|gb|ELL90945.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435005260|gb|ELL96182.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435005668|gb|ELL96588.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435012689|gb|ELM03364.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435019494|gb|ELM09938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435022933|gb|ELM13229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029386|gb|ELM19444.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435033532|gb|ELM23424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435034069|gb|ELM23959.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435035465|gb|ELM25310.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435045733|gb|ELM35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435046499|gb|ELM36114.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435058837|gb|ELM48144.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062923|gb|ELM52097.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435065107|gb|ELM54213.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435072165|gb|ELM61094.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435081069|gb|ELM69723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083715|gb|ELM72316.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435085484|gb|ELM74037.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088455|gb|ELM76912.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435093443|gb|ELM81783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097693|gb|ELM85952.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435106356|gb|ELM94373.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435107687|gb|ELM95670.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435108544|gb|ELM96509.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435118747|gb|ELN06398.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435126676|gb|ELN14070.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435128002|gb|ELN15362.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435131638|gb|ELN18849.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435136329|gb|ELN23419.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435148706|gb|ELN35422.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435149115|gb|ELN35829.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435156585|gb|ELN43075.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435159668|gb|ELN45986.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435161027|gb|ELN47269.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435172427|gb|ELN57970.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435173087|gb|ELN58612.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435180268|gb|ELN65376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435202084|gb|ELN85938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435218574|gb|ELO00975.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435219036|gb|ELO01413.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435226604|gb|ELO08169.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435232648|gb|ELO13737.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435240665|gb|ELO21055.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435242113|gb|ELO22424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435242411|gb|ELO22716.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435252925|gb|ELO32416.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435257101|gb|ELO36395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435268018|gb|ELO46648.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435272524|gb|ELO50916.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435272646|gb|ELO51035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435279984|gb|ELO57721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435286131|gb|ELO63464.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435289972|gb|ELO66922.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435307929|gb|ELO82958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435316025|gb|ELO89222.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435324317|gb|ELO96250.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435327717|gb|ELO99368.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444846234|gb|ELX71415.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444855094|gb|ELX80146.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444856237|gb|ELX81275.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444861541|gb|ELX86417.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444861925|gb|ELX86794.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444871165|gb|ELX95615.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444878999|gb|ELY03108.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444884381|gb|ELY08216.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 161/405 (39%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----IHLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYIEPNATAAQCTLDLLSD-----TPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|386592651|ref|YP_006089051.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|419732031|ref|ZP_14258939.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419735655|ref|ZP_14262528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419736957|ref|ZP_14263781.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419741819|ref|ZP_14268497.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419750490|ref|ZP_14276947.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421573241|ref|ZP_16018881.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580314|ref|ZP_16025872.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421583158|ref|ZP_16028682.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|381290662|gb|EIC31926.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381293979|gb|EIC35119.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381306415|gb|EIC47289.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381306996|gb|EIC47862.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381315186|gb|EIC55949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383799692|gb|AFH46774.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|402520070|gb|EJW27424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402528726|gb|EJW35976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402532084|gb|EJW39281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
Length = 918
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 70/302 (23%)
Query: 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALI 431
K RA+ A KS+FLA +SHE+RTP+NG++G L L T+L+ TQRD+ T + L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+IN+VLD +K+EA KL LE++ F LR LD+V++L + S +KG+EL + + + VP+ V
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 492 LGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRS 551
+GDP R +Q+ITNLVGN++KFTE G+I + V +R + T + E +
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEVQIR---------- 450
Query: 552 GTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611
+T G+ D + F+ Q++ASI +GG T
Sbjct: 451 -----DTGIGIPERDQSRLFQAFR--------QADASISR---RHGG------------T 482
Query: 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTF 671
G+G L I++ LV M G ISF S+P GSTF
Sbjct: 483 GLG------------------------------LVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 672 SF 673
F
Sbjct: 513 WF 514
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 72/405 (17%)
Query: 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISF 661
V + V + DTGIGIP Q R+F F QAD+S SR +GGTG+GL I++ LV
Sbjct: 443 VQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVN-------- 494
Query: 662 VSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721
++G SF + + + F + DL P V+ + P A +
Sbjct: 495 ----EMGGDISFHSQPNRGSTFWFH-----INLDLNPN-------VIIDGPSTACLAGKR 538
Query: 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD---IILVEKDCWISGEDSGFNAQL- 777
L + + D S T E + P + L D I F L
Sbjct: 539 LAYIEPNATAAQCTLDLLSD-----TPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLT 593
Query: 778 LDWKPNGHVFKLPKLILLATNI-SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836
+ + + +LLA ++ +K K GG A ++KPL ++ + L +
Sbjct: 594 MQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAA-ACLLKPLTSTRLLPALTEYCQL 652
Query: 837 ENKRQAGRGVPNGSSFHQGLLRGKKI----LVVDDNGVNRMVAAGALKKFGATVECAASA 892
+ + L+ KI + VDDN N + L+ VE S
Sbjct: 653 NHHPEPL------------LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG 700
Query: 893 KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952
A+D+ + FD MDIQMP+MDG A I Q+ +
Sbjct: 701 HQAVDRAKQMQ-FDLILMDIQMPDMDGIRACELIHQLPHQQQT----------------- 742
Query: 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997
P++A+TA + ++ L GM+ Y++KP EEE L+ L ++
Sbjct: 743 ---PVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRY 784
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,923,879,454
Number of Sequences: 23463169
Number of extensions: 616741563
Number of successful extensions: 1943585
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 39535
Number of HSP's successfully gapped in prelim test: 56669
Number of HSP's that attempted gapping in prelim test: 1675272
Number of HSP's gapped (non-prelim): 205715
length of query: 1006
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 853
effective length of database: 8,769,330,510
effective search space: 7480238925030
effective search space used: 7480238925030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)