BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001846
(1006 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/270 (78%), Positives = 241/270 (89%), Gaps = 1/270 (0%)
Query: 59 MDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFA 118
MD+ NKIRR+EVL SMCDQRARMLQDQF+V+VNHVHAL ILVSTFHY KNPSA+DQ+TFA
Sbjct: 1 MDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFA 60
Query: 119 EYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTM-KSEPSPIRDEYAPVMFYQ 177
EYT RTAFERPLLSGVAYA +VV+ +RE FERQH I TM + EPSP+RDEYAPV+F Q
Sbjct: 61 EYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRDEYAPVIFSQ 120
Query: 178 EPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPR 237
+ +S+++SLDMMSGEEDRENILRAR TGKAVLT PFRLL +HHLGVVLTFPVYKS LP
Sbjct: 121 DSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPEN 180
Query: 238 STVEERIKATAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQD 297
TVEERI ATAGY+GG FDVESLVENLLGQLAGNQAI+V+VYD+TNASDPL+MYG+Q+++
Sbjct: 181 PTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEE 240
Query: 298 GDMSLLHESELDFGDSFRKHKMICRYHQKA 327
D SL HES+LDFGD FRKHKMICRYHQKA
Sbjct: 241 ADRSLSHESKLDFGDPFRKHKMICRYHQKA 270
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KIL+V+DN +N MVA +K+ G T++ A + A+ + S +D MD+ MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSS-YDLVLMDVCMPVLDGL 68
Query: 921 EATRRIRQMESKAN-EQMMNGGSSVDGTAK-----RDELHLPILAMTADVIHATFDECLK 974
+ATR IR E N + G + + R LPI+AMTA+ + + +EC
Sbjct: 69 KATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYA 128
Query: 975 CGMDGYVSKPFEEENLYRELAKFF 998
GMD ++SKP + L L ++
Sbjct: 129 NGMDSFISKPVTLQKLRECLQQYL 152
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 77/158 (48%), Gaps = 41/158 (25%)
Query: 856 LLRGKKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAAL----------------DK 898
LRGK++LVVDDN ++R VA G LKK G + VE S K AL DK
Sbjct: 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDK 117
Query: 899 LQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
L FD FMD QMPEMDG+EATR IR++E + PI+
Sbjct: 118 LP----FDYIFMDCQMPEMDGYEATREIRKVEKSYG------------------VRTPII 155
Query: 959 AMTA-DVIHATFDECLKCGMDGYVSKPFEE-ENLYREL 994
A++ D E ++ GMD ++ K + N+ RE+
Sbjct: 156 AVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREI 193
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVVDD+ +NR + A L G + A AL+ L H D D+ MP MDG+
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 190
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
T+RIRQ+ L LP++ +TA+ + CL+ GMD +
Sbjct: 191 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 228
Query: 982 SKPFEEENLYRELAKF 997
SKP + + + L +
Sbjct: 229 SKPVTLDVIKQTLTLY 244
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 28/143 (19%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQS----PHCFDACFMDIQMP 915
KILVV+DN VN+ V L G +E A + A DK++ ++ FMD+QMP
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 62
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL-PILAMTADVIHATFDECLK 974
++DG +T+ IR RD + PI+A+TA + ECL+
Sbjct: 63 KVDGLLSTKMIR----------------------RDLGYTSPIVALTAFADDSNIKECLE 100
Query: 975 CGMDGYVSKPFEEENLYRELAKF 997
GM+G++SKP + L L +F
Sbjct: 101 SGMNGFLSKPIKRPKLKTILTEF 123
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 28/143 (19%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQS----PHCFDACFMDIQMP 915
KILVV+DN VN+ V L G +E A + A DK++ ++ FMD+QMP
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 63
Query: 916 EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL-PILAMTADVIHATFDECLK 974
++DG +T+ IR RD + PI+A+TA + ECL+
Sbjct: 64 KVDGLLSTKMIR----------------------RDLGYTSPIVALTAFADDSNIKECLE 101
Query: 975 CGMDGYVSKPFEEENLYRELAKF 997
GM+G++SKP + L L +F
Sbjct: 102 SGMNGFLSKPIKRPKLKTILTEF 124
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
ILVVDD+ +NR + A L G + A AL+ L H D D+ MP MDG+
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 69
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
T+RIRQ+ L LP++ +TA+ + CL+ GMD +
Sbjct: 70 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 107
Query: 982 SKP 984
SKP
Sbjct: 108 SKP 110
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
H G K+LV+D+NGV+RMV G L G V +S + L + H FMD+
Sbjct: 1 HMSNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEH--KVVFMDV 58
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL-AMTADVIHATFDE 971
MP ++ ++ RI + +K Q P+L A++ + +T ++
Sbjct: 59 CMPGVENYQIALRIHEKFTKQRHQR------------------PLLVALSGNTDKSTKEK 100
Query: 972 CLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003
C+ G+DG + KP +N+ L+ + + L
Sbjct: 101 CMSFGLDGVLLKPVSLDNIRDVLSDLLEPRVL 132
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKN-GLTSSEDKFQPDII 758
F GLK +V+DE V VT+ G++V + + SS + + S E K
Sbjct: 5 FTGLKVLVMDENGVSRMVTK------GLLVHLGCEVTTVSSNEECLRVVSHEHK------ 52
Query: 759 LVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIM 818
+V D + G ++ A + K + P L+ L+ N K +K + G D V++
Sbjct: 53 VVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGL-DGVLL 111
Query: 819 KPLRASMIAACLQQVL 834
KP+ I L +L
Sbjct: 112 KPVSLDNIRDVLSDLL 127
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
Length = 143
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 853 HQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDI 912
H+ +R ++LV DD+ NRMV L+K G V C A+ LD + + +DA +D+
Sbjct: 8 HRARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAM-AEEDYDAVIVDL 66
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
MP M+G + +++R M++ + P++ ++ADV C
Sbjct: 67 HMPGMNGLDMLKQLRVMQASGMR------------------YTPVVVLSADVTPEAIRAC 108
Query: 973 LKCGMDGYVSKPFEEENLYRELAKFFKS 1000
+ G +++KP L LA S
Sbjct: 109 EQAGARAFLAKPVVAAKLLDTLADLAVS 136
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+ +DN + R+VAA AL+K + + AL Q+ FD MDIQMP MDG E
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ-FDVIIMDIQMPVMDGLE 71
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
A IR E N + + I+A+TAD I D+ +D YV
Sbjct: 72 AVSEIRNYERTHNTKRAS-----------------IIAITADTID---DDRPGAELDEYV 111
Query: 982 SKPFEEENL 990
SKP L
Sbjct: 112 SKPLNPNQL 120
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+D +++ VED GIGIP A++R+F F + DSS + GTG+GL+I+K +VEL G+I
Sbjct: 170 KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRI 229
Query: 660 SFVSRPQVGSTF 671
S GS F
Sbjct: 230 WVESEVGKGSRF 241
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 37/175 (21%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTA-QICGKALIA 432
R + D K++F+A +SHE+RTP+ I + YA+T G+ ++
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAI----------------KAYAETIYNSLGELDLS 55
Query: 433 LINEVL------------------DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRN 474
+ E L D +++E + L++ +L +++ ++ E + +
Sbjct: 56 TLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASS 115
Query: 475 KGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG--HIFVKVHLAER 527
+ + + P DP R RQ++ NL+ N VK++++ +VKV L E+
Sbjct: 116 HNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
+D +++ VED GIGIP A++R+F F + DSS + GTG+GL+I+K +VEL G+I
Sbjct: 170 KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRI 229
Query: 660 SFVSRPQVGSTF 671
S GS F
Sbjct: 230 WVESEVGKGSRF 241
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 37/175 (21%)
Query: 374 RAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQRDYAQTA-QICGKALIA 432
R + D K++F+A +SHE+RTP+ I + YA+T G+ ++
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAI----------------KAYAETIYNSLGELDLS 55
Query: 433 LINEVL------------------DRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRN 474
+ E L D +++E + L++ +L +++ ++ E + +
Sbjct: 56 TLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASS 115
Query: 475 KGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG--HIFVKVHLAER 527
+ + + P DP R RQ++ NL+ N VK++++ +VKV L E+
Sbjct: 116 HNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD G R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDDN R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 62 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 101
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 102 YVVKPFTAATLEEKLNKIFE 121
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDDN R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L TA+ + G G
Sbjct: 62 LELLKTIR----------------ADGAMS----ALPVLMTTAEAKKENIIAAAQAGASG 101
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 102 YVVKPFTAATLEEKLNKIFE 121
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 49/83 (59%)
Query: 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
E+ L + V+D GIGIP E+VF F + D + +R GGTG+GL+I+K +V+ G I
Sbjct: 74 EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDI 133
Query: 660 SFVSRPQVGSTFSFTAVFGKCKE 682
S G+T +FT + + +E
Sbjct: 134 WADSIEGKGTTITFTLPYKEEQE 156
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 849 GSSFHQGLL-RGKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFD 906
GS + +L + KIL+VDD R + L+ G + A AL L+ FD
Sbjct: 1 GSHMMEAILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD-FD 59
Query: 907 ACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966
D MP M G + + IR A+E++ HLP+L +TA+
Sbjct: 60 FVVTDWNMPGMQGIDLLKNIR-----ADEELK---------------HLPVLMITAEAKR 99
Query: 967 ATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999
E + G++GY+ KPF L +L K F+
Sbjct: 100 EQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 8 KFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 67 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 106
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 107 YVVKPFTAATLEEKLNKIFE 126
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D +MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWRMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR +G S LP+L +TA + G G
Sbjct: 65 LELLKTIRA----------DGAMSA----------LPVLMVTAHAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D +MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWRMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTPATLEEKLNKIFE 124
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTAEADAENIKALAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTARAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTPATLEEKLNKIFE 125
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D +MP MDG
Sbjct: 6 KFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWKMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAYAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ F D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFIISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR A+ M LP+L +TA+ + G G
Sbjct: 65 LELLKTIR-----ADSAMS---------------ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ F D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFIISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR A+ M LP+L +TA+ + G G
Sbjct: 66 LELLKTIR-----ADSAMS---------------ALPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENVIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWMMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTARAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR + + LP+L +TA+ + G G
Sbjct: 65 LELLKTIRAXXAMS--------------------ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWDMPNMDG 68
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA + G G
Sbjct: 69 LELLKTIR----------------ADGAMS----ALPVLMVTAQAKKENIIAAAQAGASG 108
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 109 YVVKPFTAATLEEKLNKIFE 128
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ F D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIICDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR A+ M LP+L +TA+ + G G
Sbjct: 65 LELLKTIR-----ADSAMS---------------ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWMMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTALAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +T++ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTSEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
+V KPF L +L K F+
Sbjct: 105 WVVKPFTAATLEEKLNKIFE 124
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWDMPNMDG 68
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR +G S LP+L +TA + G G
Sbjct: 69 LELLKTIRA----------DGAMSA----------LPVLMVTAKAKKENIIAAAQAGASG 108
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 109 YVVKPFTAATLEEKLNKIFE 128
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +T + + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTTEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +T + + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTVEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWDMPNMDG 68
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA + G G
Sbjct: 69 LELLKTIR----------------ADGAMS----ALPVLMVTARAKKENIIAAAQAGASG 108
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 109 YVVKPFTAATLEEKLNKIFE 128
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVV + G + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +T + + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTMEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWDMPNMDG 68
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA + G G
Sbjct: 69 LELLKTIR----------------ADGAMS----ALPVLMVTAYAKKENIIAAAQAGASG 108
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 109 YVVKPFTAATLEEKLNKIFE 128
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L + A+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVIAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISXWNMPNMDG 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 66 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 105
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 106 YVVKPFTAATLEEKLNKIFE 125
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
KK+L+VDD+ V R + + LKK G V A + + AL+KL S D +DI MP MD
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-SEFTPDLIVLDIMMPVMD 60
Query: 919 GFEATRRIRQME 930
GF +++++ E
Sbjct: 61 GFTVLKKLQEKE 72
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISXWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 28/133 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKIL+VDD + + K G V A + + AL++ ++ D +D+ +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP-DIIILDLMLPEIDG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC--LKCGM 977
E + IR+ S +PIL ++A + FD+ L+ G
Sbjct: 61 LEVAKTIRKTSS-----------------------VPILMLSAK--DSEFDKVIGLELGA 95
Query: 978 DGYVSKPFEEENL 990
D YV+KPF L
Sbjct: 96 DDYVTKPFSNREL 108
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVV D R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 8 KFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 66
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 67 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 106
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 107 YVVKPFTAATLEEKLNKIFE 126
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISAWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 5 KFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 63
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L +TA+ + G G
Sbjct: 64 LELLKTIR----------------ADGAMS----ALPVLMVTAEAKKENIIAAAQAGASG 103
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 104 YVVKPFTAATLEEKLNKIFE 123
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L + A+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVIAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
+V KPF L +L K F+
Sbjct: 105 WVVKPFTAATLEEKLNKIFE 124
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 561 GLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620
GL DG+ HL++ Q+ +++ +V L V DTG G+P Q
Sbjct: 147 GLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVS--DTGRGVPFHVQ 204
Query: 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFS 672
+F F+ R GG G+GL++ K LVEL G ++ S P GSTF+
Sbjct: 205 AHIFDRFV------GRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFT 250
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Query: 378 ADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXXXQ-RDYAQTAQICGKALIALINE 436
A+ K F+ VS+E+RTP+ I+G + R++ + L I++
Sbjct: 36 AERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDD 95
Query: 437 VLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPG 496
VLD A+I+A ++ LE + +L + + ++ G+ LAV + V + GD
Sbjct: 96 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGK 154
Query: 497 RFRQIITNLVGNSVKFTERG 516
R Q + +LV N+++ T G
Sbjct: 155 RLAQTLDHLVENALRQTPPG 174
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L+ KKIL+V+D+ A L K+G TVE A + +AA++K+ D MDI++ E
Sbjct: 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGE 62
Query: 917 -MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC 975
MDG + I+Q+ LP++ +TA A ++
Sbjct: 63 GMDGVQTALAIQQIS-----------------------ELPVVFLTAHTEPAVVEKIRSV 99
Query: 976 GMDGYVSKPFEEENL 990
GYV K E+ L
Sbjct: 100 TAYGYVMKSATEQVL 114
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISXWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L + A+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVIAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
YV KPF L +L K F+
Sbjct: 105 YVVKPFTAATLEEKLNKIFE 124
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 27/129 (20%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
KKILVVDD + L++ G V A+ + AL K ++ D +D+ +P++D
Sbjct: 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP-DLIVLDVMLPKLD 61
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC--LKCG 976
G E +++RQ +L PIL +TA FD+ L+ G
Sbjct: 62 GIEVCKQLRQQ----------------------KLMFPILMLTAK--DEEFDKVLGLELG 97
Query: 977 MDGYVSKPF 985
D Y++KPF
Sbjct: 98 ADDYMTKPF 106
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++LVV+DN + R ++ G V+ A AK A D + H D +D+ +P+ DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
RR R +++ LPIL +TA E L G D Y
Sbjct: 61 SLIRRWRS----------------------NDVSLPILVLTARESWQDKVEVLSAGADDY 98
Query: 981 VSKPFEEENL 990
V+KPF E +
Sbjct: 99 VTKPFHIEEV 108
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
KK+L+VDD+ V R + + LKK G V A + + AL+KL S D + I MP MD
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-SEFTPDLIVLXIMMPVMD 60
Query: 919 GFEATRRIRQME 930
GF +++++ E
Sbjct: 61 GFTVLKKLQEKE 72
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKIL+VDD + + K G V A + + AL++ ++ D + + +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP-DIIILXLMLPEIDG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC--LKCGM 977
E + IR+ S +PIL ++A + FD+ L+ G
Sbjct: 61 LEVAKTIRKTSS-----------------------VPILMLSAK--DSEFDKVIGLELGA 95
Query: 978 DGYVSKPFEEENL 990
D YV+KPF L
Sbjct: 96 DDYVTKPFSNREL 108
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure
At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 21/143 (14%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KK+L+V+DN +N + L+ G +AL + + D MDIQ+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSAL-SIARENKPDLILMDIQLPEISG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E T+ +++ + A H+P++A+TA + + + G +
Sbjct: 61 LEVTKWLKEDDDLA--------------------HIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 980 YVSKPFEEENLYRELAKFFKSKP 1002
Y+SKP + + + + +P
Sbjct: 101 YISKPISVVHFLETIKRLLERQP 123
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVDD R + LK+ G VE A AL+KLQ+ + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISXWNMPNMDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR DG LP+L + A+ + G G
Sbjct: 65 LELLKTIR----------------ADGAMS----ALPVLMVIAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
+V KPF L +L K F+
Sbjct: 105 WVVKPFTAATLEEKLNKIFE 124
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQ 913
G L K+LVVDD+ R + L + G V A A +KL + D
Sbjct: 1 GPLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN 60
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEM+G + +++R +S+ E +PI+ +TA+ A L
Sbjct: 61 MPEMNGLDLVKKVRS-DSRFKE-------------------IPIIMITAEGGKAEVITAL 100
Query: 974 KCGMDGYVSKPFEEENLYREL 994
K G++ Y+ KPF + L +L
Sbjct: 101 KAGVNNYIVKPFTPQVLKEKL 121
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
VED G GIP Q+ +F P + S GGTG+GLSI++ L++ G+I F S P
Sbjct: 96 VEDNGPGIPPHLQDTLFYPMV------SGREGGTGLGLSIARNLIDQHSGKIEFTSWP 147
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVEC-AASAKAALDKLQSPHCFDACFMDIQMPEM 917
GK++L+VDD RM+ + K G V A + + A++K + D MDI MPEM
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-DIVTMDITMPEM 60
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
+G +A + I +++ A I+ +A A E +K G
Sbjct: 61 NGIDAIKEIMKIDPNAK----------------------IIVCSAMGQQAMVIEAIKAGA 98
Query: 978 DGYVSKPFEEENLYRELAKFFK 999
++ KPF+ + L K K
Sbjct: 99 KDFIVKPFQPSRVVEALNKVSK 120
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQ 913
G L K+LVVDD+ R + L + G V A A +KL + D
Sbjct: 1 GPLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN 60
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEM+G + +++R +S+ E +PI+ +T + A L
Sbjct: 61 MPEMNGLDLVKKVRS-DSRFKE-------------------IPIIMITTEGGKAEVITAL 100
Query: 974 KCGMDGYVSKPFEEENLYREL 994
K G++ Y+ KPF + L +L
Sbjct: 101 KAGVNNYIVKPFTPQVLKEKL 121
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKILVVDD + L+K G V CA A++ ++ D +DI +P DG
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP-DLILLDIMLPNKDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC--LKCGM 977
E R +R+ + +PI+ +TA + D+ L+ G
Sbjct: 62 VEVCREVRK-----------------------KYDMPIIMLTAK--DSEIDKVIGLEIGA 96
Query: 978 DGYVSKPFEEENL 990
D YV+KPF L
Sbjct: 97 DDYVTKPFSTREL 109
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
KKILVVDD + L+K G V CA A++ ++ D +DI +P DG
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP-DLILLDIMLPNKDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC--LKCGM 977
E R +R+ + +PI+ +TA + D+ L+ G
Sbjct: 62 VEVCREVRK-----------------------KYDMPIIMLTAK--DSEIDKVIGLEIGA 96
Query: 978 DGYVSKPFEEENL 990
D YV+KPF L
Sbjct: 97 DDYVTKPFSTREL 109
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVEC-AASAKAALDKLQSPHCFDACFMDIQMPEM 917
GK++L+VDD RM+ + K G V A + + A++K + D MDI MPEM
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-DIVTMDITMPEM 59
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
+G +A + I +++ A I+ +A A E +K G
Sbjct: 60 NGIDAIKEIMKIDPNAK----------------------IIVCSAMGQQAMVIEAIKAGA 97
Query: 978 DGYVSKPFEEENLYRELAK 996
++ KPF+ + L K
Sbjct: 98 KDFIVKPFQPSRVVEALNK 116
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 387 ATVSHEIRTPMNGILG-MLAXXXXXXXXXXQRDYAQTAQICGKALIALINEVLDRAKIEA 445
A V+HEIR P+ I G ++ + Y L ++ E+L+ +K
Sbjct: 137 ARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK--E 194
Query: 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNL 505
R++ LE FNL ++ +V LF EK R I+ F +D V D R +Q++ NL
Sbjct: 195 RQV-LEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLINL 252
Query: 506 VGNSVKFT-ERGHI 518
V N+++ T E G I
Sbjct: 253 VQNAIEATGENGKI 266
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 599 SEDV--TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
SED+ + V V ++G IP +E++F PF + GTG+GLSI + ++E
Sbjct: 270 SEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ------GTGLGLSICRKIIEDEH 323
Query: 657 GQISFVSRPQVGSTFSF 673
G + + G F F
Sbjct: 324 GGKIWTENRENGVVFIF 340
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K LVVD R + LK+ G VE A AL+KLQ+ + D P DG
Sbjct: 6 KFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNXPNXDG 64
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + IR +G S LP+L +TA+ + G G
Sbjct: 65 LELLKTIRA----------DGAXSA----------LPVLXVTAEAKKENIIAAAQAGASG 104
Query: 980 YVSKPFEEENLYRELAKFFK 999
+V KPF L +L K F+
Sbjct: 105 WVVKPFTAATLEEKLNKIFE 124
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
L GK+IL+V+D V R + GAT AA AL+ L D DI MP
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPR 63
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
M+G + IR N G P+L ++A A + L+ G
Sbjct: 64 MNGLKLLEHIR-----------NRGDQT-----------PVLVISATENMADIAKALRLG 101
Query: 977 MDGYVSKPFEEENLYRELA 995
++ + KP ++ N RE+
Sbjct: 102 VEDVLLKPVKDLNRLREMV 120
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Query: 861 KILVVDDNGVNRMVAAGALKKF--GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+LV++D R+VA ALKK G+ +E AA K A+ L+S D D+QM MD
Sbjct: 5 NVLVLEDEPFQRLVAVTALKKVVPGSILE-AADGKEAVAILESCGHVDIAICDLQMSGMD 63
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G A R + K + +++ S VD PIL + ECL
Sbjct: 64 GL-AFLRHASLSGKVHSVILS--SEVD----------PILRQAT----ISMIECLGLNFL 106
Query: 979 GYVSKPFEEENLYRELAKF 997
G + KPF E + L ++
Sbjct: 107 GDLGKPFSLERITALLTRY 125
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L++DD+ V R A L+ V A + L +S D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP-DLVICDLRXPQIDGLE 66
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
RRIRQ S+ PI+ ++ + + E L+ G Y+
Sbjct: 67 LIRRIRQTASET----------------------PIIVLSGAGVXSDAVEALRLGAADYL 104
Query: 982 SKPFEE 987
KP E+
Sbjct: 105 IKPLED 110
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L++DD+ V R A L+ V A + L +S D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP-DLVICDLRXPQIDGLE 66
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
RRIRQ S+ PI+ ++ + + E L+ G Y+
Sbjct: 67 LIRRIRQTASET----------------------PIIVLSGAGVMSDAVEALRLGAADYL 104
Query: 982 SKPFEE 987
KP E+
Sbjct: 105 IKPLED 110
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKLQSPHCFDACFMDIQ 913
G L K+LVVDD+ R + L + G V A A +KL +
Sbjct: 1 GPLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWN 60
Query: 914 MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL 973
MPEM+G + +++R +S+ E +PI+ +T + A L
Sbjct: 61 MPEMNGLDLVKKVRS-DSRFKE-------------------IPIIMITTEGGKAEVITAL 100
Query: 974 KCGMDGYVSKPFEEENLYREL 994
K G++ Y+ KPF + L +L
Sbjct: 101 KAGVNNYIVKPFTPQVLKEKL 121
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++LVVDD+ +R L+K V A+ A+ AL L+ +D PE+DG
Sbjct: 126 EVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYXPEIDGI 185
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
R +R+ SK L I+ ++ LK G + +
Sbjct: 186 SLVRXLRERYSKQ--------------------QLAIIGISVSDKRGLSARYLKQGANDF 225
Query: 981 VSKPFEEENL 990
+++PFE E L
Sbjct: 226 LNQPFEPEEL 235
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+VDD+ L+ G V AAS + AL ++ + DA D+ +P +DG+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYK-NLPDALICDVLLPGIDGYT 65
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
+R+RQ LPIL +TA + + G + Y+
Sbjct: 66 LCKRVRQHPLTKT--------------------LPILXLTAQGDISAKIAGFEAGANDYL 105
Query: 982 SKPFEEENL-YR 992
+KPFE + L YR
Sbjct: 106 AKPFEPQELVYR 117
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex With
Chey6 From R. Sphaeroides
Length = 145
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 862 ILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+++VDD + R+ A +K V AA+ + ALDKL + D +DI+MP MDG
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDG 75
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E R + ++++A M++ +V G+ HA + G DG
Sbjct: 76 MEFLRHAK-LKTRAKICMLS-SVAVSGSP-----------------HAA--RARELGADG 114
Query: 980 YVSKPFE------EENLYRELAKFFKS 1000
V+KP EE ELA+ ++
Sbjct: 115 VVAKPSGTVSHDLEEKTGGELARTMRT 141
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 26/138 (18%)
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM--DI 912
L + K+ILVVDD+ LK+ VE A + A KL + F+ M D+
Sbjct: 2 SLKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST---FEPAIMTLDL 58
Query: 913 QMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC 972
MP++DG + R +RQ AN+ P + + + + A +
Sbjct: 59 SMPKLDGLDVIRSLRQ-NKVANQ--------------------PKILVVSGLDKAKLQQA 97
Query: 973 LKCGMDGYVSKPFEEENL 990
+ G D Y+ KPF+ + L
Sbjct: 98 VTEGADDYLEKPFDNDAL 115
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 31/138 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
++LVVDD + + +LK G V A + ALD+ + DA +D+ P DGF
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP-DAVILDVXXPGXDGF 83
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTA----KRDELHLPILAMTADVIHATFDECLKCG 976
RR+R +D A RD L I +T G
Sbjct: 84 GVLRRLR-------------ADGIDAPALFLTARDSLQDKIAGLT-------------LG 117
Query: 977 MDGYVSKPFEEENLYREL 994
D YV+KPF E + L
Sbjct: 118 GDDYVTKPFSLEEVVARL 135
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 862 ILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+++VDD + R+ A +K V AA+ + ALDKL + D ++I+MP MDG
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLNIEMPVMDG 75
Query: 920 FEATRRIR 927
E R +
Sbjct: 76 MEFLRHAK 83
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+ILVVDD R + L++ G ++ A + + AL K S + +D +DI+MP + G
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN-YDLVILDIEMPGISG 60
Query: 920 FEATRRIRQMESKA 933
E IR+ + A
Sbjct: 61 LEVAGEIRKKKKDA 74
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILVVDD N + L V A AL + + D +D+ MP MDGF
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTAL-AMAARDLPDIILLDVMMPGMDGF 61
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
R+++ D T + H+P++ +TA + L+ G +
Sbjct: 62 TVCRKLKD----------------DPTTR----HIPVVLITALDGRGDRIQGLESGASDF 101
Query: 981 VSKPFEEENLY---RELAKF 997
++KP ++ L+ R L +F
Sbjct: 102 LTKPIDDVMLFARVRSLTRF 121
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 47/265 (17%)
Query: 740 STAKNGLTS--SEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPNGHVFKLPKLILL 795
STA +G T+ + PDIIL+ D + G D GF +L D H+ P +++
Sbjct: 29 STAMDGPTALAMAARDLPDIILL--DVMMPGMD-GFTVCRKLKDDPTTRHI---PVVLIT 82
Query: 796 ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ------VLSTENKRQA-GR--GV 846
A + D ++G A + KP+ M+ A ++ V+ +R+A GR GV
Sbjct: 83 ALDGRGDRIQGLESG--ASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGV 140
Query: 847 PNGSSFH-QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
G++ GL G ++L+VDDN A L V + KA K+ +
Sbjct: 141 IAGAAARLDGL--GGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKA---KISAGGPV 195
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D ++ DG T +R E LP+LAM
Sbjct: 196 DLVIVNAAAKNFDGLRFTAALRSEERTR--------------------QLPVLAMVDPDD 235
Query: 966 HATFDECLKCGMDGYVSKPFEEENL 990
+ L+ G++ +S+P + + L
Sbjct: 236 RGRMVKALEIGVNDILSRPIDPQEL 260
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
+ILVVDD N + L V A AL + + D +D+ MP MDGF
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTAL-AMAARDLPDIILLDVMMPGMDGF 62
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
R+++ D T + H+P++ +TA + L+ G +
Sbjct: 63 TVCRKLKD----------------DPTTR----HIPVVLITALDGRGDRIQGLESGASDF 102
Query: 981 VSKPFEEENLY---RELAKF 997
++KP ++ L+ R L +F
Sbjct: 103 LTKPIDDVMLFARVRSLTRF 122
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 47/265 (17%)
Query: 740 STAKNGLTS--SEDKFQPDIILVEKDCWISGEDSGFNA--QLLDWKPNGHVFKLPKLILL 795
STA +G T+ + PDIIL+ D + G D GF +L D H+ P +++
Sbjct: 30 STAMDGPTALAMAARDLPDIILL--DVMMPGMD-GFTVCRKLKDDPTTRHI---PVVLIT 83
Query: 796 ATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ------VLSTENKRQA-GR--GV 846
A + D ++G A + KP+ M+ A ++ V+ +R+A GR GV
Sbjct: 84 ALDGRGDRIQGLESG--ASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGV 141
Query: 847 PNGSSFH-QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
G++ GL G ++L+VDDN A L V + KA K+ +
Sbjct: 142 IAGAAARLDGL--GGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKA---KISAGGPV 196
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
D ++ DG T +R E LP+LAM
Sbjct: 197 DLVIVNAAAKNFDGLRFTAALRSEERTR--------------------QLPVLAMVDPDD 236
Query: 966 HATFDECLKCGMDGYVSKPFEEENL 990
+ L+ G++ +S+P + + L
Sbjct: 237 RGRMVKALEIGVNDILSRPIDPQEL 261
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 559 LSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMAS------NGGSEDV-------TLM 605
L+ + D + + F + + E F+ ++N+M + NGG+ V ++
Sbjct: 100 LANMSCVDIQATLAPFSVIGEREKFRQ--CLLNVMKNAIEAMPNGGTLQVYVSIDNGRVL 157
Query: 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665
+ + DTG+G+ ER+ P+ T++ GTG+G+ + ++E M G I S
Sbjct: 158 IRIADTGVGMTKEQLERLGEPYF-----TTKGVKGTGLGMMVVYRIIESMNGTIRIESEI 212
Query: 666 QVGSTFSF 673
G+T S
Sbjct: 213 HKGTTVSI 220
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 373 VRAEAADVAKSQFLATVSHEIRTPMNGILGMLAXXXXXXXXX-XQRDYAQTAQICGKALI 431
+RAE + A + A++SHEIR P+ G + +R YA+ A
Sbjct: 6 IRAEKME-AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAE 64
Query: 432 ALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFV 491
A+I + L AK E V + ++D + L + + LA F V
Sbjct: 65 AIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPF-------SV 117
Query: 492 LGDPGRFRQIITNLVGNSVKFTERG 516
+G+ +FRQ + N++ N+++ G
Sbjct: 118 IGEREKFRQCLLNVMKNAIEAMPNG 142
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
G + +KIL+VDD R++ K G AA+ ALD + D +D+++
Sbjct: 1 GSMMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKI 59
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
P MDG E +R++ ++ +M +D + EL
Sbjct: 60 PGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKEL 98
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657
G+E VED G GI ++ +F PF++ DS +R GTG+GL+I + +V+ G
Sbjct: 72 GTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS--ARTISGTGLGLAIVQRIVDNHNG 129
Query: 658 QISF 661
+
Sbjct: 130 MLEL 133
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+KIL+VDD R++ K G AA+ ALD + D +D+++P MDG
Sbjct: 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPGMDG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
E +R++ ++ +M +D + EL
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKEL 94
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ +KIL+VDD R++ K G AA+ ALD + D +D+++P
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
MDG E +R++ ++ +M +D + EL
Sbjct: 60 MDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKEL 96
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 24/131 (18%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++ILV++D+ V L G V+ A SA L K + H D +D+ +P+ DG
Sbjct: 38 QRILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKAREDHP-DLILLDLGLPDFDG 96
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+ +R+R+ + LPI+ +TA L G D
Sbjct: 97 GDVVQRLRKNSA-----------------------LPIIVLTARDTVEEKVRLLGLGADD 133
Query: 980 YVSKPFEEENL 990
Y+ KPF + L
Sbjct: 134 YLIKPFHPDEL 144
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNS 509
+E FNL ++ +V LF EK R I+ F +D V D R +Q++ NLV N+
Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLINLVQNA 59
Query: 510 VKFT-ERGHI 518
++ T E G I
Sbjct: 60 IEATGENGKI 69
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 599 SEDV--TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMR 656
SED+ + V V ++G IP +E++F PF + GTG+GLSI + ++E
Sbjct: 73 SEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ------GTGLGLSICRKIIEDEH 126
Query: 657 GQISFVSRPQVGSTFSF 673
G + + G F F
Sbjct: 127 GGKIWTENRENGVVFIF 143
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 29/128 (22%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ VVDD+ R V AL G T + L L S D DI+MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGMDGLA 64
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-- 979
++I+Q LP++ MTA H+ D + G
Sbjct: 65 LLKQIKQRHPM----------------------LPVIIMTA---HSDLDAAVSAYQQGAF 99
Query: 980 -YVSKPFE 986
Y+ KPF+
Sbjct: 100 DYLPKPFD 107
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 29/128 (22%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ VVDD+ R V AL G T + L L S D DI+MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGMDGLA 64
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-- 979
++I+Q LP++ MTA H+ D + G
Sbjct: 65 LLKQIKQRHPM----------------------LPVIIMTA---HSDLDAAVSAYQQGAF 99
Query: 980 -YVSKPFE 986
Y+ KPF+
Sbjct: 100 DYLPKPFD 107
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 29/128 (22%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ VVDD+ R V AL G T + L L S D DI+MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGMDGLA 64
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-- 979
++I+Q LP++ MTA H+ D + G
Sbjct: 65 LLKQIKQRHPM----------------------LPVIIMTA---HSDLDAAVSAYQQGAF 99
Query: 980 -YVSKPFE 986
Y+ KPF+
Sbjct: 100 DYLPKPFD 107
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ +KIL+VDD R++ K G AA+ ALD + D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
MDG E +R++ ++ +M +D + EL
Sbjct: 60 MDGIEIAKRMKVIDENIRVIIMTAYGELDMIQESKEL 96
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ +KIL+VDD R++ K G AA+ ALD + D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
MDG E +R++ ++ +M +D + EL
Sbjct: 60 MDGIEILKRMKVIDENIRVIIMTAYGELDMAQESKEL 96
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ +KIL+VDD R++ K G AA+ ALD + D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
MDG E +R++ ++ +M +D + EL
Sbjct: 60 MDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKEL 96
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
D L + VED G GIPLS +E +F + D+ G G+GL++++ + E G+I
Sbjct: 72 DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRP----GQGVGLAVAREITEQYEGKI 126
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 32/142 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL---DKLQSPHCFDACFMDIQMPEM 917
KI VVDD+ LKK ++ K L D L F +D+ +P+
Sbjct: 4 KIAVVDDD-------KNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAFHVVVLDVXLPDY 56
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
G+E R I++ R E + +L + +D + + + G
Sbjct: 57 SGYEICRXIKE--------------------TRPETWVILLTLLSD--DESVLKGFEAGA 94
Query: 978 DGYVSKPFEEENLYRELAKFFK 999
D YV+KPF E L + +F +
Sbjct: 95 DDYVTKPFNPEILLARVKRFLE 116
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ +KIL+VDD R++ K G AA+ ALD + D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
MDG E +R++ ++ +M +D + EL
Sbjct: 60 MDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKEL 96
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 32/142 (22%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAAL---DKLQSPHCFDACFMDIQMPEM 917
KI VVDD+ LKK ++ K L D L F +D+ +P+
Sbjct: 4 KIAVVDDD-------KNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAFHVVVLDVXLPDY 56
Query: 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGM 977
G+E R I++ R E + +L + +D + + + G
Sbjct: 57 SGYEICRXIKE--------------------TRPETWVILLTLLSD--DESVLKGFEAGA 94
Query: 978 DGYVSKPFEEENLYRELAKFFK 999
D YV+KPF E L + +F +
Sbjct: 95 DDYVTKPFNPEILLARVKRFLE 116
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++LVV+D + ALKK TV+ C + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP--FDVVILDIXLPVHDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA--DVIHATFDECLKCGM 977
+E + R ES N P+L +TA DV + + L G
Sbjct: 62 WEILKSXR--ESGVNT--------------------PVLXLTALSDVEYRV--KGLNXGA 97
Query: 978 DGYVSKPFEEENLYRELAKFFKSKPLS 1004
D Y+ KPF+ L + + K S
Sbjct: 98 DDYLPKPFDLRELIARVRALIRRKSES 124
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+ILVVDD R + L++ G ++ A + + AL K S + +D +DI+ P + G
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN-YDLVILDIEXPGISG 60
Query: 920 FEATRRIRQMESKA 933
E IR+ + A
Sbjct: 61 LEVAGEIRKKKKDA 74
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++LVV+D + ALKK TV+ C + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA--DVIHATFDECLKCGM 977
+E + +R ES N P+L +TA DV + + L G
Sbjct: 62 WEILKSMR--ESGVNT--------------------PVLMLTALSDVEYRV--KGLNMGA 97
Query: 978 DGYVSKPFEEENLYRELAKFFKSK 1001
D Y+ KPF+ L + + K
Sbjct: 98 DDYLPKPFDLRELIARVRALIRRK 121
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCF 905
VP GS ++R +LVVDD+ RMV + ++ AK L+ ++
Sbjct: 15 VPRGSHMTDRVIR---VLVVDDSAFMRMVLKDIIDS-QPDMKVVGFAKDGLEAVEKAIEL 70
Query: 906 --DACFMDIQMPEMDGFEATRRI 926
D MDI+MP ++G EA + I
Sbjct: 71 KPDVITMDIEMPNLNGIEALKLI 93
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 857 LRGKKILVVDDNGVNRMVAAGAL--KKFGATVECAASAKAALDKLQSPHCFDACFMDIQM 914
LR K++LVV+DN + + L K +E + AL ++Q +D +DI +
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK-YDLIILDIGL 61
Query: 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
P +GFE +R+ AN+ H PI+ +T +V +C
Sbjct: 62 PIANGFEVXSAVRK--PGANQ------------------HTPIVILTDNVSDDRAKQCXA 101
Query: 975 CGMDGYVSK 983
G V K
Sbjct: 102 AGASSVVDK 110
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
+ +KIL+VDD R++ K G AA+ ALD + D + +++P
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLXMKIPG 59
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953
MDG E +R++ ++ +M +D + EL
Sbjct: 60 MDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKEL 96
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF 920
KIL++D + N G L++ G +++ A + + A+ K+ S + +D F++I + + DG+
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDGDGW 64
Query: 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY 980
++IR + + PI+ T + L G D Y
Sbjct: 65 TLCKKIRNVTT-----------------------CPIVYXTYINEDQSILNALNSGGDDY 101
Query: 981 VSKPFEEENLYRELAKFFK 999
+ KP E LY ++ +
Sbjct: 102 LIKPLNLEILYAKVKAILR 120
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 23/133 (17%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++ +VDD+ + + ++ VE +A L + D +D+ MP+MDG
Sbjct: 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQ--DIIILDLMMPDMDG 61
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD- 978
E R + + +S A+ +++G S V+H+ L CG++
Sbjct: 62 IEVIRHLAEHKSPASLILISGYDS-------------------GVLHSAETLALSCGLNV 102
Query: 979 -GYVSKPFEEENL 990
+KP E L
Sbjct: 103 INTFTKPINTEVL 115
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 29/128 (22%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ VVDD+ R V AL G T + L L S D I+MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSXIRMPGMDGLA 64
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-- 979
++I+Q LP++ MTA H+ D + G
Sbjct: 65 LLKQIKQRHPM----------------------LPVIIMTA---HSDLDAAVSAYQQGAF 99
Query: 980 -YVSKPFE 986
Y+ KPF+
Sbjct: 100 DYLPKPFD 107
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
I++V+D V + + G TV AS A L ++ D +DI +P+ +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIXQNQSVDLILLDINLPDENGLX 63
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
TR +R+ R + + ++ +D I L+ G D YV
Sbjct: 64 LTRALRE---------------------RSTVGIILVTGRSDRIDRIVG--LEXGADDYV 100
Query: 982 SKPFEEENL 990
+KP E L
Sbjct: 101 TKPLELREL 109
>pdb|2QSJ|A Chain A, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
pdb|2QSJ|B Chain B, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
Length = 154
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 862 ILVVDDNGVNRMVAAGALKKF--GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+L+VDD+ + R A L+ G VE A + AL L++ + D +D+ +P+ +
Sbjct: 6 VLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEA 65
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+ R+++ + +++G + H L+ G DG
Sbjct: 66 IDGLVRLKRFDPSNAVALISGETD----------------------HELIRAALEAGADG 103
Query: 980 YVSKPFEEENLYRELAKFFKSK 1001
++ K + + L ++ + +
Sbjct: 104 FIPKSADPQVLIHAVSLILEGE 125
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 601 DVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQI 659
D L + VED G GIP S + VF +AD+ G G+GL++++ + E GQI
Sbjct: 77 DDHLHIFVEDDGPGIPHSKRSLVFDRGQRADTLRP----GQGVGLAVAREITEQYAGQI 131
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K+IL+VDD+ L+ G VE AA+A L K+++ F+ I++P+ +G
Sbjct: 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF-FNLALFXIKLPDXEG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
E + ++ + + G +S++ + + ++ A G D
Sbjct: 63 TELLEKAHKLRPGXKKIXVTGYASLENS---------VFSLNA-------------GADA 100
Query: 980 YVSKPFEEENLYRELAK 996
Y+ KP +L ++ +
Sbjct: 101 YIXKPVNPRDLLEKIKE 117
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVF------MPFMQADSSTSRHYGGTGIGLSISKCL 651
G+ED+T V + D G G+PL +R+F P + ++S + G G GL IS+
Sbjct: 279 GNEDLT--VKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLY 336
Query: 652 VELMRGQISFVS 663
+ +G + S
Sbjct: 337 AQYFQGDLKLYS 348
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 23/131 (17%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
+++L+ +D + RM A L++ G + A +L H D MD++MP DG
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDG 73
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG 979
+A I A++++ PI+ +TA + G
Sbjct: 74 IDAASEI------ASKRIA-----------------PIVVLTAFSQRDLVERARDAGAMA 110
Query: 980 YVSKPFEEENL 990
Y+ KPF +L
Sbjct: 111 YLVKPFSISDL 121
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator Spo0a
Length = 130
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 24/100 (24%)
Query: 906 DACFMDIQMPEMDGFEATRRIRQ-MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964
D +DI MP +DG RIR E + N M+ D T K EL
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVEL----------- 98
Query: 965 IHATFDECLKCGMDGYVSKPFEEENLYRELAKFF-KSKPL 1003
G ++ KPF+ ENL + + + K+ P+
Sbjct: 99 -----------GASYFILKPFDMENLAHHIRQVYGKTTPV 127
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 861 KILVVDDNGVNRMVAAGALKKFG-ATVECAASAKAALDKL-QSPHCFDACFMDIQMPEMD 918
K+L+VDD +R++ AL++ G + A + + + Q+PH D MP+MD
Sbjct: 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHL--VISDFNMPKMD 65
Query: 919 GFEATRRIR 927
G + +R
Sbjct: 66 GLGLLQAVR 74
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded (BetaALPHA)-Barrel
From Fragments Of Different Folds
Length = 234
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 25/120 (20%)
Query: 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945
V+ A + + A++K + D MDI MPEM+G +A + I +++ A
Sbjct: 8 VDDATNGREAVEKYKELKP-DIVTMDITMPEMNGIDAIKEIMKIDPNAK----------- 55
Query: 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV--SKPFEEENLYRELAKFFKSKPL 1003
I+ +A A E +K G G++ + E +L +LA+ F S+ +
Sbjct: 56 -----------IIVCSAMGQQAMVIEAIKAGAKGFIVNTAAVENPSLITQLAQTFGSQAV 104
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVF------MPFMQADSSTSRHYGGTGIGLSISKCL 651
G ED+T+ + D G G+PL +R+F P D+S + G G GL IS+
Sbjct: 266 GKEDLTIKI--SDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLY 323
Query: 652 VELMRGQISFVS 663
+ +G ++ S
Sbjct: 324 AKYFQGDLNLYS 335
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVF------MPFMQADSSTSRHYGGTGIGLSISKCL 651
G ED+T+ + D G G+PL +R+F P D+S + G G GL IS+
Sbjct: 266 GKEDLTIKI--SDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLY 323
Query: 652 VELMRGQISFVS 663
+ +G ++ S
Sbjct: 324 AKYFQGDLNLYS 335
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 581 EGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVF------MPFMQADSST 634
EG+ + +++ + G ED++ + + D G G+PL +R+F P + +
Sbjct: 278 EGYPAVKTLVTL-----GKEDLS--IKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTR 330
Query: 635 SRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669
+ G G GL IS+ +G + S VG+
Sbjct: 331 AAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGT 365
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 27/133 (20%)
Query: 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALD--KLQSPHCFDACFMDIQMP 915
R +IL+V+D+ L++ G E + + A+ L P D D+ MP
Sbjct: 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP---DLIISDVLMP 62
Query: 916 EMDGFEATRRIR-QMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974
EMDG+ R ++ Q + + ++ L IL+ DV+ + L+
Sbjct: 63 EMDGYALCRWLKGQPDLRTIPVIL----------------LTILSDPRDVVRS-----LE 101
Query: 975 CGMDGYVSKPFEE 987
CG D +++KP ++
Sbjct: 102 CGADDFITKPCKD 114
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 22/75 (29%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
GK++L+VDD A + + A++K + D MDI MPEM+
Sbjct: 2 GKRVLIVDD---------------------ATNGREAVEKYKELKP-DIVTMDITMPEMN 39
Query: 919 GFEATRRIRQMESKA 933
G +A + I +++ A
Sbjct: 40 GIDAIKEIMKIDPNA 54
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
++ILVV+D R + L++ G A +A+++L P D +D +P
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGS 60
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + + +++ + RD +P++ +TA L+ G D
Sbjct: 61 GIQFIKHLKR-----------------ESMTRD---IPVVMLTARGEEEDRVRGLETGAD 100
Query: 979 GYVSKPFEEENL 990
Y++KPF + L
Sbjct: 101 DYITKPFSPKEL 112
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 857 LRGKKILVVDDN-----GVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911
L +I++VDD+ G R++ ++ G V A+ +L D MD
Sbjct: 3 LSTARIMLVDDHPIVREGYRRLIE----RRPGYAVVAEAADAGEAYRLYRETTPDIVVMD 58
Query: 912 IQMPEMDGFEATRRIRQMESKA 933
+ +P G EATR IRQ + A
Sbjct: 59 LTLPGPGGIEATRHIRQWDGAA 80
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
++ILVV+D R + L++ G A +A+++L P D +D +P
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGS 60
Query: 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD 978
G + + +++ + RD +P++ +TA L+ G D
Sbjct: 61 GIQFIKHLKR-----------------ESMTRD---IPVVMLTARGEEEDRVRGLETGAD 100
Query: 979 GYVSKPFEEENL 990
Y++KPF + L
Sbjct: 101 DYITKPFSPKEL 112
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGT-----GIGLSISKCLV 652
G ED++ + + D G G+PL ER+F + GGT G GL IS+
Sbjct: 280 GEEDLS--IKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYA 337
Query: 653 ELMRGQISFVSRPQVGS 669
+ +G + S G+
Sbjct: 338 KYFQGDLQLFSMEGFGT 354
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 598 GSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGT-----GIGLSISKCLV 652
G ED L + + D G G+PL ER+F + GGT G GL IS+
Sbjct: 267 GEED--LSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYA 324
Query: 653 ELMRGQISFVSRPQVGS 669
+ +G + S G+
Sbjct: 325 KYFQGDLQLFSMEGFGT 341
>pdb|1YS3|A Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|B Chain B, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|C Chain C, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|A Chain A, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|B Chain B, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|C Chain C, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
Length = 150
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISK 649
++ ++S G E + ++D G G+P ++ VF F + ST+ H G+G+GL++
Sbjct: 69 LSAVSSRAGVE-----IAIDDNGSGVPEGERQVVFERFSRG--STASH-SGSGLGLALVA 120
Query: 650 CLVELMRGQISFVSRPQVGS 669
+L G S + P G+
Sbjct: 121 QQAQLHGGTASLENSPLGGA 140
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 24/124 (19%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+L+V+D R AL+ G V A + + L + + D +D+ +P+ DG E
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGDGIE 62
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
R +RQ + +P++ ++A + L G D Y+
Sbjct: 63 FIRDLRQWSA-----------------------VPVIVLSARSEESDKIAALDAGADDYL 99
Query: 982 SKPF 985
SKPF
Sbjct: 100 SKPF 103
>pdb|1W8X|N Chain N, Structural Analysis Of Prd1
Length = 126
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608
C SG G + +A G N +L D +GF I A N G+ ++ V
Sbjct: 18 CDSGEGPQSVRGYFDAVAGENVKYDLTYLADTQGFTGVQCIYIDNAENDGAFEID----V 73
Query: 609 EDTGIGIPLSAQERVFMPFMQADSS--TSRHYG 639
E+TG I A ++ + P + + +RH G
Sbjct: 74 EETGQRIKCPAGKQGYFPLLVPGRAKFVARHLG 106
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ VVDD+ R L+ G VE A L+ + P +D++MP M G E
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEH-RRPEQHGCLVLDMRMPGMSGIE 65
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
++ + DG +PI+ +TA +K G ++
Sbjct: 66 LQEQLTAIS--------------DG--------IPIVFITAHGDIPMTVRAMKAGAIEFL 103
Query: 982 SKPFEEENL 990
KPFEE+ L
Sbjct: 104 PKPFEEQAL 112
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 33/140 (23%)
Query: 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQ--SPH 903
VP GS K+LV +D + R A L VE AK + +Q
Sbjct: 15 VPRGSHM--------KVLVAEDQSMLRD-AMCQLLTLQPDVESVLQAKNGQEAIQLLEKE 65
Query: 904 CFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963
D +D++MP G E IR ++L ++ +T
Sbjct: 66 SVDIAILDVEMPVKTGLEVLEWIRS----------------------EKLETKVVVVTTF 103
Query: 964 VIHATFDECLKCGMDGYVSK 983
F+ +K G+D YV K
Sbjct: 104 KRAGYFERAVKAGVDAYVLK 123
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 22/80 (27%)
Query: 906 DACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965
DA +DI MP +DG +R M++ +++ SSVD
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAG--------------- 97
Query: 966 HATFDECLKCGMDGYVSKPF 985
L+ G D Y+ KPF
Sbjct: 98 -------LEAGADDYLVKPF 110
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 861 KILVVDDNGVNRMVAAGALKKFGAT--VECAASAKAALDKLQSPHCFDACFMDIQMPEMD 918
+++V DD+ + R AL G+ V A AAL+ +++ H D +D +MP MD
Sbjct: 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA-HLPDVALLDYRMPGMD 75
Query: 919 GFEATRRIRQME 930
G + +R E
Sbjct: 76 GAQVAAAVRSYE 87
>pdb|1VCY|A Chain A, Vva2 Isoform
Length = 213
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 60 DEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQDTFAE 119
D+ +R++ +GSM D+ A+ L+D F+ V+ I+++TF + S+ F +
Sbjct: 78 DQSTINQREQEVGSMVDKIAKFLRDAFSAVVDLSKLGAIILNTFTNLEEESS---SGFLQ 134
Query: 120 YTT 122
++T
Sbjct: 135 FST 137
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The Receiver
Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 29/145 (20%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ ++DD+ R L+ G TV ASA AL L + DI+MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFA-GIVISDIRMPGMDGLA 64
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-- 979
R+I ++ LP++ +T H ++ DG
Sbjct: 65 LFRKILALDP----------------------DLPMILVTG---HGDIPMAVQAIQDGAY 99
Query: 980 -YVSKPFEEENLYRELAKFFKSKPL 1003
+++KPF + L + + K + L
Sbjct: 100 DFIAKPFAADRLVQSARRAEKKRRL 124
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
IL+V+D V R + G V A+ A + ++ S + + MDI +P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDV-FEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981
R +R+ +AN +M RD IL L+ G D Y+
Sbjct: 65 LARELRE---QANVALMF-------LTGRDNEVDKILG-------------LEIGADDYI 101
Query: 982 SKPFEEENL 990
+KPF L
Sbjct: 102 TKPFNPREL 110
>pdb|2B4A|A Chain A, Crystal Structure Of A Response Regulator Receiver Domain
Protein (Bh3024) From Bacillus Halodurans C-125 At 2.42
A Resolution
Length = 138
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSS 734
+ + +V+++P A + QYHLN+LG V + S
Sbjct: 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPS 47
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 29/134 (21%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+ ++DD+ R L+ G TV ASA AL L + DI+MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFA-GIVISDIRMPGMDGLA 64
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-- 979
R+I ++ LP++ +T H ++ DG
Sbjct: 65 LFRKILALDP----------------------DLPMILVTG---HGDIPMAVQAIQDGAY 99
Query: 980 -YVSKPFEEENLYR 992
+++KPF + L +
Sbjct: 100 DFIAKPFAADRLVQ 113
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
K++LVVDD + L++ G + A + + A K++ F +D+ MP+ DG
Sbjct: 2 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF-FPVIVLDVWMPDGDG 60
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAK 949
I++ + ++ G SVD K
Sbjct: 61 VNFIDFIKENSPDSVVIVITGHGSVDTAVK 90
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+LV++D+ V R + L G VE A K A L H F+ + + +P+++G E
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH-FNVVLLXLLLPDVNGLE 61
Query: 922 ATRRIRQMESKANEQMMNGGSSV 944
+ I++ + ++ G ++
Sbjct: 62 ILKWIKERSPETEVIVITGHGTI 84
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain
(Chey-Like) From Methylobacillus Flagellatus
Length = 127
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG 919
++ L+V+D L+ G + S AL + S +DA F+D+ +P+ G
Sbjct: 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAM-STRGYDAVFIDLNLPDTSG 62
Query: 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951
+++R + + + + +V G AK D
Sbjct: 63 LALVKQLRALPMEKTSKFV----AVSGFAKND 90
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 860 KKILVVDDNGVNRMVAAGALKKFG---ATVECAASAKAALDKLQSPHCFDACFMDIQMPE 916
++ILVVDD+ + L+ G A + A A+ +L+ D +D+ +P
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP----DLVLLDLMLPG 61
Query: 917 MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976
M+G + R +R +G V TAK D T DV+ L+ G
Sbjct: 62 MNGIDVCRVLRAD---------SGVPIVMLTAKTD---------TVDVVLG-----LESG 98
Query: 977 MDGYVSKPFE 986
D Y+ KPF+
Sbjct: 99 ADDYIMKPFK 108
>pdb|3HW3|A Chain A, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|B Chain B, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|C Chain C, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|D Chain D, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW5|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW6|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW4|A Chain A, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|B Chain B, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|C Chain C, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|D Chain D, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
Length = 261
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 3 LKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISM-SIYRGMD- 60
+K+ K H H + E+M TK YT + +RA + L MA + +R +
Sbjct: 143 IKSEKTHIHIFSF-TGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER 201
Query: 61 -EENKIRRKEVLGSMC 75
EE R E+ G+MC
Sbjct: 202 GEETIEERFEITGTMC 217
>pdb|3EBJ|A Chain A, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|B Chain B, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|C Chain C, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|D Chain D, Crystal Structure Of An Avian Influenza Virus Protein
Length = 259
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 3 LKTRKNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKALVLWIMGMAFISM-SIYRGMD- 60
+K+ K H H + E+M TK YT + +RA + L MA + +R +
Sbjct: 141 IKSEKTHIHIFSF-TGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSER 199
Query: 61 -EENKIRRKEVLGSMC 75
EE R E+ G+MC
Sbjct: 200 GEETIEERFEITGTMC 215
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFE 921
+LVVDDN VNR LK G A A+ A L D++ G +
Sbjct: 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLXITDLRXQPESGLD 69
Query: 922 ATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958
R IR E A ++ G + D D HL ++
Sbjct: 70 LIRTIRASERAALSIIVVSGDT-DVEEAVDVXHLGVV 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,989,351
Number of Sequences: 62578
Number of extensions: 1131677
Number of successful extensions: 2800
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 2568
Number of HSP's gapped (non-prelim): 173
length of query: 1006
length of database: 14,973,337
effective HSP length: 108
effective length of query: 898
effective length of database: 8,214,913
effective search space: 7376991874
effective search space used: 7376991874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)