Query 001846
Match_columns 1006
No_of_seqs 723 out of 4353
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10841 hybrid sensory kinase 100.0 1.3E-62 2.9E-67 621.8 75.1 487 368-1000 433-919 (924)
2 PRK11107 hybrid sensory histid 100.0 9.2E-62 2E-66 622.4 70.5 506 372-1001 283-788 (919)
3 KOG0519 Sensory transduction h 100.0 2.8E-63 6E-68 612.1 14.0 774 168-999 4-785 (786)
4 PRK15347 two component system 100.0 1.1E-55 2.4E-60 566.3 71.7 427 369-999 385-811 (921)
5 PRK11091 aerobic respiration c 100.0 2.5E-55 5.5E-60 552.9 49.1 376 367-1000 268-645 (779)
6 TIGR02956 TMAO_torS TMAO reduc 100.0 5E-55 1.1E-59 563.2 51.0 371 370-999 452-822 (968)
7 PRK11466 hybrid sensory histid 100.0 3.1E-53 6.8E-58 543.2 55.0 365 372-1000 434-800 (914)
8 PRK09959 hybrid sensory histid 100.0 1E-48 2.3E-53 514.5 51.3 380 365-999 695-1075(1197)
9 PRK10618 phosphotransfer inter 100.0 4.3E-46 9.3E-51 465.2 45.7 240 366-678 434-673 (894)
10 PRK13837 two-component VirA-li 100.0 2.3E-43 5E-48 445.6 50.9 365 380-1001 448-815 (828)
11 COG5002 VicK Signal transducti 100.0 4.4E-41 9.6E-46 356.1 18.2 227 378-680 221-451 (459)
12 PRK13557 histidine kinase; Pro 100.0 1.9E-37 4.1E-42 373.5 47.1 370 381-1003 162-538 (540)
13 PRK09303 adaptive-response sen 100.0 2.4E-36 5.2E-41 349.1 33.8 244 358-678 127-378 (380)
14 COG2205 KdpD Osmosensitive K+ 100.0 1.7E-36 3.8E-41 353.4 28.7 224 377-680 655-882 (890)
15 PRK11006 phoR phosphate regulo 100.0 4.7E-33 1E-37 327.1 29.5 220 381-678 203-424 (430)
16 PRK10604 sensor protein RstB; 100.0 4.2E-32 9.1E-37 319.3 34.7 226 370-679 200-425 (433)
17 PRK10815 sensor protein PhoQ; 100.0 8.7E-31 1.9E-35 311.6 36.8 220 376-678 260-479 (485)
18 TIGR02938 nifL_nitrog nitrogen 100.0 3.4E-31 7.4E-36 314.6 30.7 217 381-677 275-494 (494)
19 COG4251 Bacteriophytochrome (l 100.0 3.5E-31 7.5E-36 299.7 28.1 263 327-681 480-745 (750)
20 PRK10549 signal transduction h 100.0 2.1E-30 4.6E-35 307.2 35.7 233 369-679 227-460 (466)
21 PRK10364 sensor protein ZraS; 100.0 9.8E-30 2.1E-34 301.3 36.0 214 380-679 235-450 (457)
22 PRK10490 sensor protein KdpD; 100.0 4.6E-30 9.9E-35 324.4 33.6 222 378-679 660-884 (895)
23 COG4191 Signal transduction hi 100.0 2E-27 4.3E-32 270.9 48.7 211 382-676 384-600 (603)
24 PRK10755 sensor protein BasS/P 100.0 3.6E-29 7.8E-34 286.6 34.7 223 371-678 126-351 (356)
25 PRK09835 sensor kinase CusS; P 100.0 6.5E-29 1.4E-33 295.7 36.9 229 370-677 250-480 (482)
26 TIGR01386 cztS_silS_copS heavy 100.0 5.7E-29 1.2E-33 293.6 35.4 226 371-676 230-457 (457)
27 TIGR03785 marine_sort_HK prote 100.0 6.4E-29 1.4E-33 307.2 36.7 226 373-676 476-703 (703)
28 PRK09470 cpxA two-component se 100.0 2.6E-28 5.6E-33 288.7 36.9 229 370-679 231-459 (461)
29 COG3852 NtrB Signal transducti 100.0 4.3E-29 9.2E-34 262.5 24.5 223 379-679 129-356 (363)
30 PRK10337 sensor protein QseC; 100.0 3E-28 6.5E-33 287.7 34.3 221 371-674 226-448 (449)
31 PRK09467 envZ osmolarity senso 100.0 4E-28 8.8E-33 285.3 34.0 219 369-678 216-434 (435)
32 TIGR02966 phoR_proteo phosphat 100.0 2.8E-28 6E-33 274.4 28.8 218 381-675 113-333 (333)
33 PRK11073 glnL nitrogen regulat 100.0 1.3E-27 2.9E-32 272.5 27.5 218 380-677 128-347 (348)
34 PRK11100 sensory histidine kin 100.0 1.9E-26 4.1E-31 273.4 36.1 218 382-678 256-474 (475)
35 COG0642 BaeS Signal transducti 99.9 1.4E-25 3.1E-30 249.9 31.8 217 381-679 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 1.1E-25 2.5E-30 273.9 29.7 214 381-679 389-603 (607)
37 PF03924 CHASE: CHASE domain; 99.9 1.9E-26 4.2E-31 241.3 15.6 186 108-293 1-193 (193)
38 PRK13560 hypothetical protein; 99.9 2.3E-25 5.1E-30 281.6 26.1 215 364-679 587-805 (807)
39 TIGR02916 PEP_his_kin putative 99.9 3.5E-24 7.6E-29 265.8 27.5 203 381-676 474-679 (679)
40 PRK11086 sensory histidine kin 99.9 8.9E-23 1.9E-27 246.5 23.2 195 382-679 339-537 (542)
41 PRK11644 sensory histidine kin 99.9 1.9E-21 4.1E-26 231.9 31.1 195 379-677 299-494 (495)
42 PRK15053 dpiB sensor histidine 99.9 9.2E-22 2E-26 238.4 26.9 198 384-679 340-541 (545)
43 COG5000 NtrY Signal transducti 99.9 2E-21 4.4E-26 220.6 21.8 212 380-677 484-708 (712)
44 COG0745 OmpR Response regulato 99.8 2.1E-20 4.5E-25 199.8 17.1 118 861-1001 2-119 (229)
45 COG4192 Signal transduction hi 99.8 3.5E-19 7.6E-24 195.2 25.7 209 383-676 452-665 (673)
46 COG3614 Predicted periplasmic 99.8 4.8E-19 1E-23 188.2 20.4 218 34-264 11-249 (348)
47 PRK13559 hypothetical protein; 99.8 3.7E-19 8.1E-24 204.2 20.9 186 381-678 169-360 (361)
48 PF02518 HATPase_c: Histidine 99.8 1.4E-19 2.9E-24 171.9 12.5 109 493-677 1-110 (111)
49 PRK10935 nitrate/nitrite senso 99.8 3.1E-17 6.8E-22 199.7 27.3 194 384-679 362-561 (565)
50 PRK09581 pleD response regulat 99.7 1.5E-16 3.4E-21 187.6 25.9 259 704-998 4-272 (457)
51 COG3290 CitA Signal transducti 99.7 2.9E-16 6.4E-21 179.3 23.8 193 385-679 336-533 (537)
52 COG2204 AtoC Response regulato 99.7 3.5E-17 7.6E-22 187.6 15.4 119 860-1001 5-123 (464)
53 PF00072 Response_reg: Respons 99.7 8.8E-17 1.9E-21 151.9 14.5 111 862-995 1-112 (112)
54 PRK10600 nitrate/nitrite senso 99.7 1.2E-15 2.6E-20 186.1 27.5 181 395-678 375-557 (569)
55 COG3437 Response regulator con 99.7 4.9E-17 1.1E-21 177.0 12.2 121 859-999 14-134 (360)
56 COG0784 CheY FOG: CheY-like re 99.7 3.9E-16 8.5E-21 151.5 16.3 120 859-1000 5-126 (130)
57 COG4753 Response regulator con 99.7 1.4E-16 3E-21 182.2 13.7 116 861-999 3-121 (475)
58 COG3706 PleD Response regulato 99.7 1.5E-15 3.2E-20 173.1 21.6 124 858-1002 131-254 (435)
59 COG4566 TtrR Response regulato 99.7 1E-15 2.2E-20 152.3 13.7 118 860-1000 5-122 (202)
60 COG4565 CitB Response regulato 99.6 1.1E-15 2.4E-20 155.1 13.3 117 861-1000 2-120 (224)
61 PRK10547 chemotaxis protein Ch 99.6 4.2E-14 9.2E-19 171.2 24.9 146 455-679 343-525 (670)
62 COG2197 CitB Response regulato 99.6 8E-15 1.7E-19 155.4 16.4 118 861-1001 2-121 (211)
63 PLN03029 type-a response regul 99.6 1.1E-14 2.5E-19 155.8 15.8 120 859-998 8-146 (222)
64 PRK10046 dpiA two-component re 99.6 4.8E-14 1E-18 151.3 16.0 116 860-998 5-122 (225)
65 PRK04184 DNA topoisomerase VI 99.5 7.1E-14 1.5E-18 163.7 17.2 106 603-711 74-183 (535)
66 PRK10529 DNA-binding transcrip 99.5 1E-13 2.3E-18 147.6 17.0 116 861-1000 3-118 (225)
67 COG3947 Response regulator con 99.5 1.4E-14 3.1E-19 152.1 9.9 115 861-1000 2-116 (361)
68 PRK11173 two-component respons 99.5 1.1E-13 2.4E-18 149.1 16.9 117 860-1000 4-120 (237)
69 PRK10816 DNA-binding transcrip 99.5 1.9E-13 4.1E-18 145.5 16.9 117 861-1000 2-118 (223)
70 PRK09836 DNA-binding transcrip 99.5 2.4E-13 5.2E-18 145.1 16.7 117 861-1000 2-118 (227)
71 PRK10766 DNA-binding transcrip 99.5 2.9E-13 6.3E-18 143.7 16.6 117 860-1000 3-119 (221)
72 PRK09468 ompR osmolarity respo 99.5 3.7E-13 8.1E-18 144.9 17.0 118 860-1000 6-123 (239)
73 PRK10161 transcriptional regul 99.5 4.2E-13 9.1E-18 143.4 17.1 120 860-1000 3-122 (229)
74 PRK10701 DNA-binding transcrip 99.5 4.1E-13 8.9E-18 144.8 16.8 116 861-1000 3-118 (240)
75 PRK13856 two-component respons 99.5 3.9E-13 8.5E-18 145.3 16.7 116 861-1000 3-119 (241)
76 PRK10643 DNA-binding transcrip 99.5 4.3E-13 9.3E-18 142.0 16.5 117 861-1000 2-118 (222)
77 PRK10430 DNA-binding transcrip 99.5 4.1E-13 9E-18 145.4 16.2 115 861-997 3-120 (239)
78 TIGR02154 PhoB phosphate regul 99.5 6E-13 1.3E-17 141.1 16.8 120 860-1000 3-122 (226)
79 PRK10955 DNA-binding transcrip 99.5 7.2E-13 1.6E-17 141.6 16.8 115 861-1000 3-117 (232)
80 TIGR02875 spore_0_A sporulatio 99.5 7E-13 1.5E-17 145.5 16.8 120 860-1000 3-124 (262)
81 TIGR03787 marine_sort_RR prote 99.5 7.3E-13 1.6E-17 141.3 16.5 118 860-1000 1-120 (227)
82 PRK10336 DNA-binding transcrip 99.5 8.7E-13 1.9E-17 139.4 16.5 116 861-999 2-117 (219)
83 PRK11517 transcriptional regul 99.5 1.3E-12 2.8E-17 138.7 17.0 116 861-1000 2-117 (223)
84 smart00387 HATPase_c Histidine 99.4 2E-12 4.4E-17 120.2 14.7 109 493-677 1-110 (111)
85 PRK11083 DNA-binding response 99.4 2.2E-12 4.8E-17 137.1 16.7 118 860-1000 4-121 (228)
86 TIGR01387 cztR_silR_copR heavy 99.4 2.2E-12 4.7E-17 136.2 16.2 116 862-1000 1-116 (218)
87 PRK10840 transcriptional regul 99.4 2.2E-12 4.8E-17 137.3 16.3 119 860-1001 4-127 (216)
88 PRK14084 two-component respons 99.4 2.6E-12 5.7E-17 139.4 16.1 114 861-999 2-117 (246)
89 CHL00148 orf27 Ycf27; Reviewed 99.4 3.4E-12 7.5E-17 137.0 16.8 117 860-1000 7-123 (240)
90 PRK09958 DNA-binding transcrip 99.4 4.1E-12 8.8E-17 133.0 16.7 117 861-1000 2-119 (204)
91 COG4567 Response regulator con 99.4 2.2E-12 4.8E-17 123.4 12.4 115 860-997 10-124 (182)
92 PRK11361 acetoacetate metaboli 99.4 3E-12 6.5E-17 152.1 16.4 118 859-999 4-121 (457)
93 PRK10923 glnG nitrogen regulat 99.4 3.1E-12 6.8E-17 152.4 16.5 117 860-999 4-120 (469)
94 PRK15115 response regulator Gl 99.4 2.8E-12 6.1E-17 151.8 15.0 118 860-1000 6-123 (444)
95 PRK10360 DNA-binding transcrip 99.4 7.1E-12 1.5E-16 130.3 16.2 114 861-1000 3-118 (196)
96 TIGR02915 PEP_resp_reg putativ 99.4 3.7E-12 8.1E-17 150.8 15.1 113 862-999 1-118 (445)
97 PRK10365 transcriptional regul 99.4 3E-12 6.6E-17 151.3 14.2 117 860-999 6-122 (441)
98 PRK11697 putative two-componen 99.4 6.3E-12 1.4E-16 135.6 15.2 114 860-999 2-117 (238)
99 PRK09935 transcriptional regul 99.4 1.3E-11 2.7E-16 129.5 16.9 119 860-1001 4-124 (210)
100 PRK09483 response regulator; P 99.4 1.1E-11 2.4E-16 131.1 16.5 118 861-1001 3-122 (217)
101 PRK12555 chemotaxis-specific m 99.4 7.4E-12 1.6E-16 142.8 15.4 115 861-999 2-129 (337)
102 KOG0519 Sensory transduction h 99.4 9.8E-12 2.1E-16 155.1 17.4 400 369-834 373-784 (786)
103 TIGR01818 ntrC nitrogen regula 99.4 6.8E-12 1.5E-16 149.3 15.3 115 862-999 1-115 (463)
104 PRK10710 DNA-binding transcrip 99.3 2.1E-11 4.5E-16 131.0 17.2 117 860-1000 11-127 (240)
105 TIGR01052 top6b DNA topoisomer 99.3 1.2E-11 2.7E-16 143.6 16.1 73 603-676 64-139 (488)
106 PF00512 HisKA: His Kinase A ( 99.3 5E-12 1.1E-16 108.9 9.7 66 381-446 1-68 (68)
107 PRK15479 transcriptional regul 99.3 3.2E-11 7E-16 127.5 16.3 116 861-999 2-117 (221)
108 PRK14868 DNA topoisomerase VI 99.3 1.7E-11 3.8E-16 146.1 14.2 128 473-676 21-160 (795)
109 PRK09390 fixJ response regulat 99.3 4E-11 8.7E-16 124.1 14.2 118 860-1000 4-121 (202)
110 PRK00742 chemotaxis-specific m 99.3 5.4E-11 1.2E-15 136.6 16.3 115 860-998 4-131 (354)
111 PRK10100 DNA-binding transcrip 99.3 5.2E-11 1.1E-15 126.7 14.6 114 860-1001 11-128 (216)
112 PRK11475 DNA-binding transcrip 99.3 5.3E-11 1.1E-15 125.7 14.2 107 872-1001 3-116 (207)
113 PRK09581 pleD response regulat 99.3 6.9E-11 1.5E-15 139.6 16.9 118 861-999 4-121 (457)
114 COG2201 CheB Chemotaxis respon 99.3 3.3E-11 7.1E-16 133.7 12.5 103 860-986 2-108 (350)
115 PRK13435 response regulator; P 99.2 1.5E-10 3.2E-15 114.9 15.2 116 859-1001 5-122 (145)
116 PRK10610 chemotaxis regulatory 99.2 3.7E-10 8.1E-15 106.6 16.8 120 860-1000 6-126 (129)
117 PRK14867 DNA topoisomerase VI 99.2 5.9E-11 1.3E-15 141.8 13.7 77 603-679 72-151 (659)
118 cd00075 HATPase_c Histidine ki 99.2 1.3E-10 2.8E-15 106.3 12.6 71 603-675 33-103 (103)
119 COG3707 AmiR Response regulato 99.2 7E-11 1.5E-15 119.1 10.9 112 860-995 6-118 (194)
120 PRK13558 bacterio-opsin activa 99.2 1.1E-10 2.3E-15 145.4 14.7 116 860-998 8-125 (665)
121 PRK15369 two component system 99.2 4.4E-10 9.5E-15 117.0 16.6 118 860-1000 4-123 (211)
122 TIGR01925 spIIAB anti-sigma F 99.2 1.6E-10 3.5E-15 114.0 12.4 63 603-675 74-136 (137)
123 PRK10651 transcriptional regul 99.2 4.4E-10 9.4E-15 118.1 16.5 118 860-1000 7-126 (216)
124 PRK10403 transcriptional regul 99.2 5E-10 1.1E-14 117.4 16.2 117 860-999 7-125 (215)
125 PRK15411 rcsA colanic acid cap 99.1 8.1E-10 1.8E-14 117.0 14.6 117 861-1001 2-124 (207)
126 PRK09191 two-component respons 99.1 1.2E-09 2.5E-14 119.6 15.7 115 860-1000 138-254 (261)
127 PRK03660 anti-sigma F factor; 99.1 8.5E-10 1.8E-14 110.1 13.1 67 603-679 74-140 (146)
128 COG3452 Predicted periplasmic 99.1 2.9E-08 6.3E-13 103.9 22.9 185 34-265 16-201 (297)
129 PRK10693 response regulator of 99.0 9.9E-10 2.2E-14 123.3 12.3 89 888-999 2-91 (303)
130 cd00156 REC Signal receiver do 99.0 5E-09 1.1E-13 94.6 13.0 112 863-997 1-112 (113)
131 COG0643 CheA Chemotaxis protei 99.0 1.9E-08 4E-13 123.1 19.6 76 602-679 475-575 (716)
132 COG4585 Signal transduction hi 99.0 3.7E-07 8E-12 105.4 29.4 124 460-677 242-365 (365)
133 COG3920 Signal transduction hi 99.0 2.6E-07 5.6E-12 98.6 25.5 194 381-679 18-217 (221)
134 COG3851 UhpB Signal transducti 98.9 1.1E-06 2.4E-11 95.7 27.2 188 382-676 303-493 (497)
135 COG3850 NarQ Signal transducti 98.9 8.9E-07 1.9E-11 101.6 27.3 184 387-676 374-567 (574)
136 PRK04069 serine-protein kinase 98.8 5.9E-08 1.3E-12 98.7 13.0 69 603-679 77-145 (161)
137 PRK15029 arginine decarboxylas 98.8 3.4E-08 7.4E-13 121.3 12.9 106 861-989 2-121 (755)
138 COG3279 LytT Response regulato 98.7 5.8E-08 1.3E-12 105.4 10.2 113 861-998 3-117 (244)
139 COG2972 Predicted signal trans 98.7 1.2E-05 2.5E-10 95.8 29.5 66 602-678 385-453 (456)
140 COG3275 LytS Putative regulato 98.6 1.5E-05 3.3E-10 90.2 24.3 131 452-680 414-554 (557)
141 TIGR01924 rsbW_low_gc serine-p 98.6 6.6E-07 1.4E-11 90.7 12.5 68 603-678 77-144 (159)
142 smart00388 HisKA His Kinase A 98.5 3.3E-07 7.1E-12 76.9 8.1 64 382-445 2-65 (66)
143 COG4564 Signal transduction hi 98.4 0.00012 2.7E-09 79.2 25.3 184 393-679 262-449 (459)
144 KOG0787 Dehydrogenase kinase [ 98.3 2.5E-05 5.4E-10 86.2 18.8 182 417-676 174-379 (414)
145 PF14501 HATPase_c_5: GHKL dom 98.3 7.6E-06 1.6E-10 76.2 12.3 61 602-677 39-99 (100)
146 PRK11107 hybrid sensory histid 98.3 7.1E-06 1.5E-10 106.2 15.5 118 856-998 533-650 (919)
147 COG3706 PleD Response regulato 98.1 2.5E-06 5.5E-11 98.2 5.7 92 884-1000 13-104 (435)
148 cd00082 HisKA Histidine Kinase 98.1 1.5E-05 3.2E-10 66.2 7.9 62 381-442 3-65 (65)
149 TIGR00585 mutl DNA mismatch re 98.0 5.2E-05 1.1E-09 85.6 12.0 66 604-674 52-125 (312)
150 COG1389 DNA topoisomerase VI, 97.7 0.00028 6.2E-09 79.7 12.3 122 602-725 71-199 (538)
151 PF13581 HATPase_c_2: Histidin 97.6 0.0005 1.1E-08 66.5 10.7 59 603-674 66-124 (125)
152 smart00448 REC cheY-homologous 96.9 0.0046 1E-07 47.2 7.6 54 861-915 2-55 (55)
153 PF00072 Response_reg: Respons 96.8 0.016 3.4E-07 54.1 12.0 110 705-830 1-111 (112)
154 COG2172 RsbW Anti-sigma regula 96.6 0.015 3.2E-07 58.1 10.6 90 493-667 36-130 (146)
155 PRK00095 mutL DNA mismatch rep 96.6 0.0091 2E-07 73.6 11.0 57 604-665 52-114 (617)
156 COG0745 OmpR Response regulato 96.6 0.036 7.7E-07 59.8 13.8 119 703-837 1-119 (229)
157 PF06490 FleQ: Flagellar regul 96.5 0.022 4.7E-07 54.0 10.2 106 861-997 1-107 (109)
158 PRK15347 two component system 95.8 0.23 5.1E-06 64.5 18.1 122 700-835 688-811 (921)
159 COG2204 AtoC Response regulato 95.5 0.13 2.9E-06 60.3 12.7 180 703-898 5-210 (464)
160 PRK11091 aerobic respiration c 95.4 0.27 5.7E-06 62.9 16.6 123 700-836 523-645 (779)
161 PF13589 HATPase_c_3: Histidin 95.4 0.0066 1.4E-07 60.0 1.5 66 605-675 35-105 (137)
162 PRK05559 DNA topoisomerase IV 95.3 0.033 7.3E-07 68.6 7.5 49 606-654 71-131 (631)
163 COG0784 CheY FOG: CheY-like re 95.1 0.61 1.3E-05 44.5 14.2 120 700-834 3-124 (130)
164 TIGR02956 TMAO_torS TMAO reduc 94.8 0.31 6.8E-06 63.8 14.8 122 701-835 701-822 (968)
165 PRK02261 methylaspartate mutas 94.7 1.3 2.9E-05 43.7 15.3 119 859-1000 3-136 (137)
166 PLN03029 type-a response regul 94.4 0.67 1.5E-05 49.7 13.7 127 701-833 7-145 (222)
167 cd02071 MM_CoA_mut_B12_BD meth 94.2 1.3 2.8E-05 42.8 13.8 106 866-994 10-120 (122)
168 PRK00742 chemotaxis-specific m 94.1 5 0.00011 46.1 21.1 56 702-765 3-60 (354)
169 PRK10841 hybrid sensory kinase 94.0 0.61 1.3E-05 60.7 14.8 119 700-834 799-917 (924)
170 TIGR01055 parE_Gneg DNA topois 93.6 0.089 1.9E-06 64.8 5.6 49 606-654 64-124 (625)
171 PRK11466 hybrid sensory histid 93.5 0.67 1.4E-05 60.3 13.9 121 700-835 679-799 (914)
172 TIGR01818 ntrC nitrogen regula 93.1 2.2 4.8E-05 50.9 16.4 186 705-914 1-195 (463)
173 TIGR02154 PhoB phosphate regul 92.8 2 4.3E-05 44.9 14.0 119 703-835 3-121 (226)
174 PRK10161 transcriptional regul 92.8 2 4.3E-05 45.4 14.0 119 703-835 3-121 (229)
175 PF03709 OKR_DC_1_N: Orn/Lys/A 92.8 0.57 1.2E-05 44.8 8.7 95 873-990 7-103 (115)
176 PRK12555 chemotaxis-specific m 92.5 8.3 0.00018 44.0 19.4 55 703-765 1-57 (337)
177 PRK05644 gyrB DNA gyrase subun 92.5 0.22 4.8E-06 61.6 6.8 35 488-522 26-65 (638)
178 PRK10643 DNA-binding transcrip 92.2 2.9 6.3E-05 43.6 14.1 117 703-835 1-117 (222)
179 PRK09836 DNA-binding transcrip 92.1 2.9 6.3E-05 44.1 14.2 117 703-835 1-117 (227)
180 TIGR01059 gyrB DNA gyrase, B s 92.1 0.21 4.6E-06 62.1 6.0 35 488-522 19-58 (654)
181 PRK09468 ompR osmolarity respo 92.1 2.8 6.1E-05 44.6 14.1 119 702-836 5-123 (239)
182 PRK11173 two-component respons 92.1 3.1 6.8E-05 44.3 14.5 116 703-835 4-119 (237)
183 PRK10336 DNA-binding transcrip 92.0 2.9 6.3E-05 43.5 13.8 117 703-835 1-117 (219)
184 COG4565 CitB Response regulato 92.0 2.3 4.9E-05 44.7 12.2 115 703-833 1-117 (224)
185 TIGR03787 marine_sort_RR prote 91.8 3 6.4E-05 43.9 13.8 117 704-835 2-119 (227)
186 PRK10816 DNA-binding transcrip 91.8 2.9 6.3E-05 43.9 13.7 117 703-835 1-117 (223)
187 PRK10840 transcriptional regul 91.7 2.8 6.1E-05 44.2 13.4 119 702-835 3-125 (216)
188 PRK10955 DNA-binding transcrip 91.5 3.4 7.3E-05 43.6 13.8 114 704-835 3-116 (232)
189 COG4567 Response regulator con 91.3 3.5 7.5E-05 41.0 11.9 115 704-834 11-125 (182)
190 PRK10046 dpiA two-component re 91.0 4 8.7E-05 43.5 13.8 117 702-834 4-122 (225)
191 PRK10529 DNA-binding transcrip 91.0 4.6 0.0001 42.4 14.2 116 703-835 2-117 (225)
192 PRK13856 two-component respons 90.9 4.2 9.1E-05 43.5 14.0 116 704-835 3-118 (241)
193 PRK13435 response regulator; P 90.9 2.5 5.5E-05 41.3 11.2 115 702-835 5-120 (145)
194 cd02067 B12-binding B12 bindin 90.9 3.3 7.1E-05 39.5 11.7 95 866-983 10-109 (119)
195 PRK10766 DNA-binding transcrip 90.8 4.7 0.0001 42.2 14.0 116 703-835 3-118 (221)
196 PRK05218 heat shock protein 90 90.8 0.77 1.7E-05 56.7 8.9 58 605-666 74-143 (613)
197 PRK11517 transcriptional regul 90.6 5.2 0.00011 41.8 14.2 116 703-835 1-116 (223)
198 CHL00148 orf27 Ycf27; Reviewed 90.4 5 0.00011 42.5 14.0 117 702-835 6-122 (240)
199 PRK10701 DNA-binding transcrip 90.4 4.6 0.0001 43.0 13.7 115 704-835 3-117 (240)
200 COG3947 Response regulator con 90.4 1.5 3.3E-05 47.9 9.5 114 703-834 1-114 (361)
201 COG3437 Response regulator con 90.2 2.7 5.9E-05 47.5 11.6 117 700-830 12-129 (360)
202 PRK09958 DNA-binding transcrip 90.2 5.1 0.00011 41.3 13.5 117 703-835 1-118 (204)
203 COG5381 Uncharacterized protei 90.1 0.82 1.8E-05 44.5 6.5 29 498-526 64-92 (184)
204 TIGR02875 spore_0_A sporulatio 90.1 4.5 9.7E-05 44.1 13.5 120 703-836 3-124 (262)
205 PRK11083 DNA-binding response 90.1 5.5 0.00012 41.6 13.8 118 703-836 4-121 (228)
206 COG4566 TtrR Response regulato 89.7 4 8.6E-05 42.2 11.3 118 703-837 5-123 (202)
207 PRK15115 response regulator Gl 89.7 3.5 7.5E-05 49.0 13.1 118 702-835 5-122 (444)
208 PRK14083 HSP90 family protein; 89.6 0.35 7.5E-06 59.3 4.6 57 605-665 64-127 (601)
209 PRK13837 two-component VirA-li 89.5 3.4 7.4E-05 53.3 13.8 120 700-836 695-814 (828)
210 PRK10365 transcriptional regul 88.7 3.7 8E-05 48.6 12.4 118 702-835 5-122 (441)
211 PRK15426 putative diguanylate 88.3 43 0.00093 41.0 21.8 62 192-265 202-268 (570)
212 PRK15399 lysine decarboxylase 87.8 1.9 4.1E-05 53.7 9.2 97 861-982 2-104 (713)
213 PRK10923 glnG nitrogen regulat 87.8 7 0.00015 46.8 14.0 117 703-835 4-120 (469)
214 TIGR00640 acid_CoA_mut_C methy 87.6 13 0.00028 36.5 13.3 112 866-998 13-127 (132)
215 PRK11697 putative two-componen 87.3 11 0.00024 40.1 13.9 114 703-835 2-117 (238)
216 PRK09483 response regulator; P 87.3 9.7 0.00021 39.6 13.3 117 703-835 2-120 (217)
217 PRK10610 chemotaxis regulatory 87.3 20 0.00044 32.5 14.2 120 701-834 4-124 (129)
218 PRK09959 hybrid sensory histid 86.9 5.3 0.00011 53.8 13.6 119 701-835 957-1075(1197)
219 PRK15479 transcriptional regul 86.5 11 0.00024 39.1 13.2 117 703-835 1-117 (221)
220 TIGR01387 cztR_silR_copR heavy 86.5 12 0.00027 38.6 13.5 115 705-835 1-115 (218)
221 PRK14084 two-component respons 86.3 11 0.00024 40.5 13.4 113 703-834 1-116 (246)
222 PRK10710 DNA-binding transcrip 86.1 19 0.00041 38.0 14.9 116 703-835 11-126 (240)
223 COG2197 CitB Response regulato 86.0 14 0.00031 39.2 13.7 115 704-835 2-119 (211)
224 PRK10430 DNA-binding transcrip 86.0 14 0.0003 39.7 13.9 117 703-833 2-120 (239)
225 PTZ00130 heat shock protein 90 85.4 1 2.2E-05 56.4 5.0 48 605-652 136-194 (814)
226 PRK09191 two-component respons 85.2 8.7 0.00019 41.6 12.0 115 703-835 138-253 (261)
227 smart00433 TOP2c Topoisomerase 85.2 0.94 2E-05 55.8 4.7 48 605-652 34-93 (594)
228 PRK11361 acetoacetate metaboli 84.9 11 0.00023 45.0 13.5 118 702-835 4-121 (457)
229 PTZ00272 heat shock protein 83 84.9 0.83 1.8E-05 56.8 4.0 20 605-624 73-92 (701)
230 PRK15400 lysine decarboxylase 84.8 3.3 7.1E-05 51.7 9.1 79 861-964 2-86 (714)
231 COG0323 MutL DNA mismatch repa 84.8 1.3 2.8E-05 54.9 5.7 28 605-632 54-81 (638)
232 TIGR01501 MthylAspMutase methy 84.5 28 0.00061 34.3 13.6 108 869-999 15-133 (134)
233 COG4999 Uncharacterized domain 84.4 6.4 0.00014 37.4 8.6 117 856-999 8-127 (140)
234 TIGR03815 CpaE_hom_Actino heli 84.3 3.6 7.9E-05 46.7 8.7 85 883-998 1-86 (322)
235 PRK10360 DNA-binding transcrip 83.6 13 0.00028 37.9 11.9 113 704-835 3-117 (196)
236 TIGR02915 PEP_resp_reg putativ 83.1 11 0.00023 44.8 12.5 117 705-835 1-118 (445)
237 cd04728 ThiG Thiazole synthase 82.3 9.9 0.00021 41.1 10.2 100 865-996 106-222 (248)
238 COG4753 Response regulator con 81.3 10 0.00022 45.0 10.8 117 704-836 3-122 (475)
239 PRK13557 histidine kinase; Pro 81.0 17 0.00038 43.6 13.5 122 700-835 413-534 (540)
240 cd02070 corrinoid_protein_B12- 80.8 17 0.00037 38.2 11.6 99 860-982 83-190 (201)
241 PRK15411 rcsA colanic acid cap 80.6 23 0.0005 37.4 12.6 120 703-836 1-123 (207)
242 PRK09935 transcriptional regul 80.6 33 0.00072 35.1 13.8 118 702-835 3-122 (210)
243 PRK09390 fixJ response regulat 79.8 26 0.00056 35.3 12.5 117 703-835 4-120 (202)
244 cd02072 Glm_B12_BD B12 binding 79.8 46 0.001 32.5 13.1 104 869-995 13-127 (128)
245 PRK10618 phosphotransfer inter 79.7 6.6 0.00014 50.9 9.5 53 697-763 684-736 (894)
246 PRK14939 gyrB DNA gyrase subun 78.4 1.5 3.3E-05 55.0 3.1 36 488-523 25-66 (756)
247 cd02069 methionine_synthase_B1 78.0 20 0.00043 38.3 11.0 101 860-983 89-201 (213)
248 PF02310 B12-binding: B12 bind 77.6 12 0.00026 35.5 8.5 92 869-984 14-112 (121)
249 PRK00208 thiG thiazole synthas 76.6 21 0.00046 38.6 10.6 98 867-996 108-222 (250)
250 cd00156 REC Signal receiver do 74.1 43 0.00094 28.6 10.8 110 707-832 2-111 (113)
251 COG0326 HtpG Molecular chapero 74.0 3.6 7.9E-05 49.9 4.5 47 605-652 75-133 (623)
252 COG3707 AmiR Response regulato 72.0 21 0.00046 37.1 8.9 118 700-834 3-121 (194)
253 PRK15369 two component system 71.2 67 0.0015 32.4 12.9 118 702-835 3-122 (211)
254 PRK10651 transcriptional regul 69.5 90 0.0019 31.9 13.5 118 702-835 6-125 (216)
255 COG2185 Sbm Methylmalonyl-CoA 68.3 1.2E+02 0.0025 30.3 12.7 118 860-998 13-137 (143)
256 PRK09426 methylmalonyl-CoA mut 68.0 39 0.00085 42.6 11.9 111 867-1000 594-709 (714)
257 PLN03237 DNA topoisomerase 2; 67.9 7.4 0.00016 51.9 5.7 53 606-658 113-177 (1465)
258 TIGR03321 alt_F1F0_F0_B altern 66.0 2E+02 0.0044 31.3 19.4 38 473-513 173-210 (246)
259 PRK10403 transcriptional regul 65.9 1E+02 0.0022 31.4 13.0 116 703-834 7-124 (215)
260 TIGR01058 parE_Gpos DNA topois 65.4 5.2 0.00011 49.6 3.5 50 606-655 68-129 (637)
261 PHA02569 39 DNA topoisomerase 63.0 5 0.00011 49.4 2.7 50 606-655 81-144 (602)
262 PRK00043 thiE thiamine-phospha 63.0 1.1E+02 0.0024 32.0 12.8 93 881-998 102-208 (212)
263 PRK13558 bacterio-opsin activa 62.7 64 0.0014 40.4 12.6 116 703-834 8-125 (665)
264 TIGR02370 pyl_corrinoid methyl 61.7 67 0.0014 33.8 10.6 98 861-982 86-192 (197)
265 PF03602 Cons_hypoth95: Conser 61.0 15 0.00032 38.2 5.4 66 860-927 66-138 (183)
266 PRK00278 trpC indole-3-glycero 59.5 1.6E+02 0.0034 32.5 13.4 96 871-990 148-252 (260)
267 TIGR00007 phosphoribosylformim 58.7 92 0.002 33.3 11.3 68 891-982 146-217 (230)
268 PF02254 TrkA_N: TrkA-N domain 58.3 92 0.002 29.1 10.0 93 860-982 22-115 (116)
269 smart00448 REC cheY-homologous 57.5 66 0.0014 23.1 7.5 51 704-762 2-52 (55)
270 PRK15029 arginine decarboxylas 56.1 49 0.0011 42.0 9.7 55 703-764 1-63 (755)
271 PRK13111 trpA tryptophan synth 55.8 33 0.00072 37.7 7.3 45 953-997 88-138 (258)
272 PRK01130 N-acetylmannosamine-6 55.8 86 0.0019 33.4 10.4 80 878-982 113-201 (221)
273 PRK10100 DNA-binding transcrip 54.7 1.4E+02 0.0029 31.9 11.6 116 702-835 10-126 (216)
274 COG4122 Predicted O-methyltran 54.3 37 0.0008 36.3 7.1 54 861-915 86-143 (219)
275 PRK05742 nicotinate-nucleotide 54.2 3.5E+02 0.0076 30.1 15.1 68 886-982 193-260 (277)
276 cd04723 HisA_HisF Phosphoribos 53.7 79 0.0017 34.1 9.8 68 891-982 147-217 (233)
277 PLN02591 tryptophan synthase 53.7 32 0.00069 37.6 6.7 44 954-997 78-127 (250)
278 PRK13587 1-(5-phosphoribosyl)- 53.4 76 0.0017 34.3 9.5 67 893-982 151-220 (234)
279 PTZ00108 DNA topoisomerase 2-l 52.8 12 0.00025 50.2 3.6 50 606-655 96-157 (1388)
280 TIGR01334 modD putative molybd 51.7 83 0.0018 35.0 9.6 70 886-981 192-261 (277)
281 PRK05458 guanosine 5'-monophos 50.6 2E+02 0.0043 32.9 12.5 97 861-982 113-229 (326)
282 COG2201 CheB Chemotaxis respon 50.2 93 0.002 35.7 9.8 56 703-766 2-59 (350)
283 PF01596 Methyltransf_3: O-met 49.9 37 0.0008 36.0 6.3 54 860-913 71-130 (205)
284 cd04729 NanE N-acetylmannosami 49.9 1.8E+02 0.0038 31.0 11.6 78 880-982 119-205 (219)
285 PRK10558 alpha-dehydro-beta-de 49.7 1.7E+02 0.0037 32.1 11.7 100 875-996 10-112 (256)
286 cd02068 radical_SAM_B12_BD B12 49.6 1.5E+02 0.0032 28.5 10.0 107 871-1001 4-114 (127)
287 TIGR01037 pyrD_sub1_fam dihydr 49.2 2E+02 0.0042 32.2 12.4 49 954-1002 234-288 (300)
288 COG3105 Uncharacterized protei 48.6 1.4E+02 0.003 29.0 9.0 22 337-358 11-32 (138)
289 TIGR00736 nifR3_rel_arch TIM-b 47.9 1.8E+02 0.0039 31.5 11.1 63 897-982 155-219 (231)
290 PRK10128 2-keto-3-deoxy-L-rham 46.9 2.3E+02 0.005 31.3 12.1 84 891-996 27-111 (267)
291 cd04724 Tryptophan_synthase_al 46.4 60 0.0013 35.3 7.4 44 954-997 76-125 (242)
292 COG0512 PabA Anthranilate/para 44.9 28 0.00061 36.2 4.2 51 860-911 2-52 (191)
293 PRK06978 nicotinate-nucleotide 44.8 5E+02 0.011 29.2 15.1 65 887-980 210-274 (294)
294 PF06490 FleQ: Flagellar regul 44.7 1.1E+02 0.0025 28.7 8.1 34 704-737 1-34 (109)
295 cd04726 KGPDC_HPS 3-Keto-L-gul 44.2 3E+02 0.0064 28.5 12.2 84 873-982 93-185 (202)
296 TIGR00262 trpA tryptophan synt 44.1 71 0.0015 35.1 7.6 44 954-997 87-136 (256)
297 PF10960 DUF2762: Protein of u 44.1 63 0.0014 28.2 5.6 26 76-101 38-63 (71)
298 PRK06231 F0F1 ATP synthase sub 44.0 4.2E+02 0.0091 28.1 14.8 70 330-399 48-122 (205)
299 PRK12724 flagellar biosynthesi 43.8 2.6E+02 0.0055 33.2 12.3 105 859-982 252-366 (432)
300 cd04732 HisA HisA. Phosphorib 42.9 2.4E+02 0.0052 30.1 11.5 68 891-982 147-218 (234)
301 PLN03128 DNA topoisomerase 2; 42.7 27 0.00059 46.1 4.7 50 606-655 88-149 (1135)
302 cd04727 pdxS PdxS is a subunit 42.7 1.5E+02 0.0032 33.0 9.5 45 954-998 194-245 (283)
303 PRK13428 F0F1 ATP synthase sub 42.4 3.8E+02 0.0082 32.0 13.8 67 331-397 2-73 (445)
304 PRK13125 trpA tryptophan synth 42.1 2.1E+02 0.0045 31.1 10.8 88 872-984 118-215 (244)
305 cd00331 IGPS Indole-3-glycerol 42.1 2.9E+02 0.0063 29.2 11.8 79 880-982 118-200 (217)
306 PRK05848 nicotinate-nucleotide 41.9 1.7E+02 0.0038 32.4 10.2 70 886-981 186-255 (273)
307 PF10087 DUF2325: Uncharacteri 41.9 2.5E+02 0.0054 25.6 9.8 64 861-929 1-70 (97)
308 PRK14471 F0F1 ATP synthase sub 41.8 3.8E+02 0.0083 27.0 14.7 56 340-395 18-78 (164)
309 TIGR02311 HpaI 2,4-dihydroxyhe 41.6 1.8E+02 0.0038 31.8 10.2 87 889-997 19-106 (249)
310 PRK00748 1-(5-phosphoribosyl)- 41.4 1.1E+02 0.0023 32.8 8.4 69 890-982 146-219 (233)
311 TIGR03239 GarL 2-dehydro-3-deo 41.4 2E+02 0.0042 31.5 10.4 85 890-996 20-105 (249)
312 KOG4404 Tandem pore domain K+ 41.2 82 0.0018 35.4 7.3 67 36-130 7-73 (350)
313 TIGR03151 enACPred_II putative 40.7 2.1E+02 0.0046 32.3 10.9 83 875-982 101-189 (307)
314 PRK10669 putative cation:proto 40.3 2.8E+02 0.006 34.1 12.8 109 859-1000 440-549 (558)
315 COG0742 N6-adenine-specific me 40.2 74 0.0016 33.2 6.5 53 860-912 67-122 (187)
316 cd05212 NAD_bind_m-THF_DH_Cycl 40.0 60 0.0013 32.2 5.6 54 857-916 26-83 (140)
317 CHL00162 thiG thiamin biosynth 40.0 4E+02 0.0086 29.3 12.0 98 875-998 129-238 (267)
318 PRK11677 hypothetical protein; 40.0 1.5E+02 0.0032 29.3 8.1 18 338-355 7-24 (134)
319 PF05690 ThiG: Thiazole biosyn 39.6 3.1E+02 0.0067 29.7 11.0 83 874-982 114-203 (247)
320 cd00564 TMP_TenI Thiamine mono 39.5 2.2E+02 0.0048 29.0 10.3 75 882-982 94-177 (196)
321 PRK07259 dihydroorotate dehydr 39.1 3.2E+02 0.0068 30.6 12.1 49 954-1002 234-288 (301)
322 CHL00200 trpA tryptophan synth 39.1 75 0.0016 35.1 6.8 44 954-997 91-140 (263)
323 TIGR00566 trpG_papA glutamine 39.0 56 0.0012 34.0 5.6 48 862-910 2-49 (188)
324 KOG1977 DNA mismatch repair pr 38.8 54 0.0012 40.2 5.8 28 603-630 49-76 (1142)
325 TIGR00735 hisF imidazoleglycer 38.7 2.3E+02 0.0049 31.0 10.5 42 954-995 199-247 (254)
326 KOG1979 DNA mismatch repair pr 38.6 46 0.00099 40.1 5.1 26 605-630 58-83 (694)
327 PRK11840 bifunctional sulfur c 38.5 2.9E+02 0.0062 31.5 11.2 105 865-996 180-296 (326)
328 PF05582 Peptidase_U57: YabG p 38.4 2.2E+02 0.0048 31.6 10.0 97 860-984 106-227 (287)
329 PF09445 Methyltransf_15: RNA 38.3 2.2E+02 0.0048 29.0 9.5 96 859-998 21-136 (163)
330 PRK07896 nicotinate-nucleotide 38.2 1.4E+02 0.003 33.5 8.7 71 885-981 202-272 (289)
331 PRK14473 F0F1 ATP synthase sub 38.1 4.4E+02 0.0095 26.6 14.4 28 331-358 9-36 (164)
332 PRK11475 DNA-binding transcrip 37.7 3E+02 0.0065 29.1 11.0 104 718-836 6-115 (207)
333 cd04730 NPD_like 2-Nitropropan 37.7 3.3E+02 0.0071 29.0 11.6 81 878-983 97-185 (236)
334 TIGR00693 thiE thiamine-phosph 37.6 2.3E+02 0.0051 29.2 10.1 71 887-982 101-179 (196)
335 PRK08385 nicotinate-nucleotide 37.5 2.7E+02 0.0058 31.0 10.8 96 861-981 156-257 (278)
336 COG5385 Uncharacterized protei 37.3 4.7E+02 0.01 26.7 18.0 121 385-522 18-139 (214)
337 PF07568 HisKA_2: Histidine ki 37.1 1.9E+02 0.0042 25.3 7.8 72 389-469 2-73 (76)
338 COG0187 GyrB Type IIA topoisom 37.1 6.9 0.00015 47.4 -1.7 50 606-655 70-131 (635)
339 cd00452 KDPG_aldolase KDPG and 36.9 2.2E+02 0.0048 29.5 9.7 76 881-983 95-171 (190)
340 PRK14474 F0F1 ATP synthase sub 36.9 6E+02 0.013 27.8 18.1 21 493-513 189-212 (250)
341 PRK13453 F0F1 ATP synthase sub 36.0 4.9E+02 0.011 26.6 14.9 29 328-356 15-44 (173)
342 TIGR02855 spore_yabG sporulati 35.8 2.2E+02 0.0048 31.4 9.4 97 860-984 105-226 (283)
343 PRK03659 glutathione-regulated 35.4 1.8E+02 0.004 36.1 10.2 95 859-983 423-518 (601)
344 PF02743 Cache_1: Cache domain 35.4 64 0.0014 28.2 4.6 47 209-266 1-47 (81)
345 PF10883 DUF2681: Protein of u 35.1 3.3E+02 0.0071 24.8 8.9 11 342-352 13-23 (87)
346 TIGR00343 pyridoxal 5'-phospha 35.0 80 0.0017 35.0 6.0 45 954-998 197-248 (287)
347 PRK03958 tRNA 2'-O-methylase; 34.9 2.4E+02 0.0053 29.1 9.0 64 860-928 32-98 (176)
348 PRK06543 nicotinate-nucleotide 34.3 3.3E+02 0.0072 30.4 10.8 66 886-980 197-262 (281)
349 cd02065 B12-binding_like B12 b 33.8 2.1E+02 0.0046 26.9 8.4 62 866-928 10-75 (125)
350 TIGR01163 rpe ribulose-phospha 33.3 3.3E+02 0.0071 28.3 10.5 89 874-983 95-193 (210)
351 PRK05718 keto-hydroxyglutarate 32.9 2.6E+02 0.0056 29.8 9.4 91 877-993 10-103 (212)
352 PF06295 DUF1043: Protein of u 32.9 4.5E+02 0.0098 25.6 10.4 19 338-356 3-21 (128)
353 PRK07649 para-aminobenzoate/an 32.5 43 0.00092 35.2 3.4 48 862-910 2-49 (195)
354 PRK07428 nicotinate-nucleotide 32.5 1.6E+02 0.0034 33.0 8.0 69 887-981 201-269 (288)
355 PF01408 GFO_IDH_MocA: Oxidore 32.4 2.9E+02 0.0062 25.7 8.9 35 965-999 75-111 (120)
356 PRK11359 cyclic-di-GMP phospho 32.2 2.3E+02 0.0051 36.1 10.9 103 874-998 682-795 (799)
357 PRK12704 phosphodiesterase; Pr 31.8 40 0.00086 41.0 3.5 44 956-999 251-296 (520)
358 PRK06096 molybdenum transport 31.7 1.9E+02 0.0041 32.3 8.4 71 885-981 192-262 (284)
359 PRK14974 cell division protein 30.9 5E+02 0.011 29.8 11.9 107 859-986 168-290 (336)
360 PRK14472 F0F1 ATP synthase sub 30.4 6E+02 0.013 25.9 14.8 14 343-356 31-44 (175)
361 PRK05703 flhF flagellar biosyn 30.3 4.4E+02 0.0096 31.3 11.8 110 859-987 251-369 (424)
362 KOG2335 tRNA-dihydrouridine sy 30.1 5.1E+02 0.011 29.8 11.4 85 861-982 147-232 (358)
363 PF06295 DUF1043: Protein of u 30.0 2.2E+02 0.0047 27.8 7.7 31 334-364 3-33 (128)
364 PRK00811 spermidine synthase; 29.9 2.1E+02 0.0045 31.9 8.5 55 860-916 101-162 (283)
365 PRK06552 keto-hydroxyglutarate 29.7 3.1E+02 0.0068 29.2 9.4 96 877-993 8-104 (213)
366 PRK07352 F0F1 ATP synthase sub 29.5 6.2E+02 0.014 25.8 14.8 56 345-400 34-94 (174)
367 COG0157 NadC Nicotinate-nucleo 29.4 3E+02 0.0064 30.6 9.2 67 887-980 193-259 (280)
368 PRK06895 putative anthranilate 28.9 1.2E+02 0.0027 31.4 6.1 47 860-909 2-48 (190)
369 PRK05458 guanosine 5'-monophos 28.8 1.6E+02 0.0035 33.6 7.4 66 893-981 100-166 (326)
370 PRK09174 F0F1 ATP synthase sub 28.6 7.3E+02 0.016 26.3 14.7 20 361-380 89-108 (204)
371 PRK04180 pyridoxal biosynthesi 28.5 1.3E+02 0.0028 33.5 6.3 46 954-999 203-255 (293)
372 PRK03562 glutathione-regulated 28.5 2.9E+02 0.0062 34.6 10.3 93 859-981 423-516 (621)
373 PF02581 TMP-TENI: Thiamine mo 28.0 4E+02 0.0087 27.3 9.8 81 875-981 88-175 (180)
374 PRK06731 flhF flagellar biosyn 28.0 6.3E+02 0.014 28.0 11.7 107 860-986 104-222 (270)
375 PRK03372 ppnK inorganic polyph 27.8 5.7E+02 0.012 28.9 11.5 101 860-1000 6-128 (306)
376 TIGR01182 eda Entner-Doudoroff 27.8 2.8E+02 0.0061 29.4 8.6 30 963-993 67-96 (204)
377 PRK02083 imidazole glycerol ph 27.6 5.3E+02 0.012 28.0 11.2 43 954-996 197-246 (253)
378 KOG1978 DNA mismatch repair pr 27.5 59 0.0013 39.9 3.8 23 606-628 52-74 (672)
379 cd00331 IGPS Indole-3-glycerol 27.4 3.6E+02 0.0077 28.5 9.5 44 954-997 72-117 (217)
380 COG1856 Uncharacterized homolo 27.3 3.8E+02 0.0083 28.8 9.1 87 878-986 144-254 (275)
381 COG2820 Udp Uridine phosphoryl 27.2 1.2E+02 0.0026 32.8 5.6 24 490-514 21-44 (248)
382 PLN02871 UDP-sulfoquinovose:DA 27.1 4E+02 0.0087 31.7 11.0 107 860-1000 291-400 (465)
383 PRK13461 F0F1 ATP synthase sub 27.1 6.5E+02 0.014 25.2 14.6 19 338-356 13-31 (159)
384 PRK15484 lipopolysaccharide 1, 26.8 7.4E+02 0.016 28.5 12.9 108 861-1000 226-344 (380)
385 TIGR01815 TrpE-clade3 anthrani 26.5 5.1E+02 0.011 33.0 11.9 51 858-910 515-565 (717)
386 cd04740 DHOD_1B_like Dihydroor 26.4 1.6E+02 0.0034 32.9 6.9 49 954-1002 231-285 (296)
387 PF06305 DUF1049: Protein of u 26.4 3.6E+02 0.0079 22.6 7.6 15 337-351 24-38 (68)
388 PF14689 SPOB_a: Sensor_kinase 26.3 1.6E+02 0.0035 24.8 5.2 42 385-430 15-56 (62)
389 PTZ00109 DNA gyrase subunit b; 26.1 11 0.00024 47.9 -2.6 16 606-621 163-178 (903)
390 PRK01911 ppnK inorganic polyph 26.1 5.6E+02 0.012 28.7 11.1 90 872-1001 18-121 (292)
391 TIGR00064 ftsY signal recognit 26.0 8.6E+02 0.019 26.9 12.5 109 859-982 100-224 (272)
392 PLN02274 inosine-5'-monophosph 25.9 7.6E+02 0.016 30.1 12.9 97 861-982 262-379 (505)
393 PF05768 DUF836: Glutaredoxin- 25.8 1.2E+02 0.0026 26.7 4.6 69 889-995 13-81 (81)
394 PRK06774 para-aminobenzoate sy 25.7 87 0.0019 32.5 4.4 48 862-910 2-49 (191)
395 cd01748 GATase1_IGP_Synthase T 25.6 2.2E+02 0.0047 29.7 7.4 42 862-910 1-42 (198)
396 cd00429 RPE Ribulose-5-phospha 25.6 5.6E+02 0.012 26.5 10.6 86 876-982 98-193 (211)
397 PRK06015 keto-hydroxyglutarate 25.3 3.1E+02 0.0068 29.0 8.3 29 963-992 63-91 (201)
398 TIGR03088 stp2 sugar transfera 25.2 4.1E+02 0.009 30.1 10.3 107 860-1000 230-338 (374)
399 PRK11889 flhF flagellar biosyn 25.0 6.8E+02 0.015 29.6 11.5 108 859-986 269-388 (436)
400 PRK08072 nicotinate-nucleotide 25.0 9.8E+02 0.021 26.6 16.6 66 887-981 193-258 (277)
401 cd04722 TIM_phosphate_binding 24.9 3.1E+02 0.0068 27.5 8.4 56 904-982 136-198 (200)
402 PLN02335 anthranilate synthase 24.9 1.4E+02 0.0031 31.9 5.9 52 858-910 17-68 (222)
403 PLN02589 caffeoyl-CoA O-methyl 24.8 2E+02 0.0043 31.5 7.0 54 860-913 105-165 (247)
404 PRK13460 F0F1 ATP synthase sub 24.7 7.6E+02 0.016 25.2 15.0 41 361-401 52-92 (173)
405 PLN02716 nicotinate-nucleotide 24.7 3.1E+02 0.0068 31.0 8.6 75 886-980 207-287 (308)
406 TIGR00095 RNA methyltransferas 24.7 1.9E+02 0.0041 30.1 6.6 67 860-926 73-143 (189)
407 COG0159 TrpA Tryptophan syntha 24.5 1.4E+02 0.0029 33.0 5.6 36 953-988 93-134 (265)
408 PRK06559 nicotinate-nucleotide 24.5 5.5E+02 0.012 28.8 10.4 66 886-980 201-266 (290)
409 PRK04302 triosephosphate isome 24.5 7.8E+02 0.017 26.1 11.5 30 954-983 173-202 (223)
410 PRK12723 flagellar biosynthesi 24.2 7.1E+02 0.015 29.2 11.8 105 859-982 206-319 (388)
411 PRK01033 imidazole glycerol ph 24.2 3.2E+02 0.007 29.9 8.7 72 892-986 154-230 (258)
412 PRK07114 keto-hydroxyglutarate 24.1 5.2E+02 0.011 27.8 9.9 95 877-993 10-107 (222)
413 PRK10742 putative methyltransf 24.0 7.2E+02 0.016 27.3 10.9 58 859-918 110-178 (250)
414 PRK05581 ribulose-phosphate 3- 24.0 8.3E+02 0.018 25.5 11.7 99 876-996 102-216 (220)
415 PRK11677 hypothetical protein; 24.0 4.3E+02 0.0092 26.1 8.3 23 36-60 3-25 (134)
416 PLN02935 Bifunctional NADH kin 23.8 9.9E+02 0.021 29.0 12.9 103 858-1000 193-318 (508)
417 PF07652 Flavi_DEAD: Flaviviru 23.8 2.2E+02 0.0049 28.5 6.4 71 858-929 32-121 (148)
418 cd06346 PBP1_ABC_ligand_bindin 23.7 7E+02 0.015 27.6 11.6 63 863-928 142-214 (312)
419 PRK05749 3-deoxy-D-manno-octul 23.6 5.1E+02 0.011 30.3 10.9 110 860-1000 263-388 (425)
420 TIGR00734 hisAF_rel hisA/hisF 23.6 3.5E+02 0.0075 29.0 8.5 68 891-982 142-212 (221)
421 PTZ00314 inosine-5'-monophosph 23.6 5.8E+02 0.013 31.0 11.3 98 860-982 254-372 (495)
422 PRK04539 ppnK inorganic polyph 23.4 7E+02 0.015 28.0 11.2 98 861-1000 7-124 (296)
423 KOG1562 Spermidine synthase [A 23.3 2.6E+02 0.0057 31.3 7.4 61 861-922 147-213 (337)
424 PRK02155 ppnK NAD(+)/NADH kina 23.2 6.6E+02 0.014 28.2 10.9 98 861-1000 7-119 (291)
425 PF00977 His_biosynth: Histidi 23.2 2.8E+02 0.0061 29.8 7.8 77 883-982 140-219 (229)
426 PF01564 Spermine_synth: Sperm 22.9 1.5E+02 0.0032 32.3 5.7 68 860-928 101-179 (246)
427 PRK01130 N-acetylmannosamine-6 22.9 2.4E+02 0.0053 29.9 7.2 42 954-996 56-116 (221)
428 PRK06106 nicotinate-nucleotide 22.8 2.9E+02 0.0063 30.9 7.8 67 886-981 198-264 (281)
429 PRK05670 anthranilate synthase 22.7 1.5E+02 0.0033 30.7 5.5 48 862-910 2-49 (189)
430 cd02940 DHPD_FMN Dihydropyrimi 22.5 4.4E+02 0.0096 29.5 9.5 28 954-981 252-279 (299)
431 PRK13143 hisH imidazole glycer 22.5 3.2E+02 0.0068 28.6 7.9 43 861-910 2-44 (200)
432 PRK01231 ppnK inorganic polyph 22.5 7.6E+02 0.016 27.7 11.3 100 861-1000 6-118 (295)
433 PRK08007 para-aminobenzoate sy 22.3 81 0.0018 32.8 3.3 48 862-910 2-49 (187)
434 TIGR01232 lacD tagatose 1,6-di 22.3 2.3E+02 0.0049 32.2 6.9 43 920-982 227-275 (325)
435 cd04962 GT1_like_5 This family 22.3 4.7E+02 0.01 29.3 10.0 105 861-999 229-335 (371)
436 COG3114 CcmD Heme exporter pro 21.9 2E+02 0.0043 24.5 4.7 16 65-80 39-54 (67)
437 PRK14475 F0F1 ATP synthase sub 21.8 8.5E+02 0.018 24.7 14.2 19 360-378 45-63 (167)
438 TIGR00262 trpA tryptophan synt 21.6 1E+03 0.023 26.0 11.9 97 862-984 119-228 (256)
439 PRK13125 trpA tryptophan synth 21.6 2.7E+02 0.0059 30.2 7.4 43 954-996 74-124 (244)
440 COG0813 DeoD Purine-nucleoside 21.5 85 0.0018 33.4 3.2 25 490-514 18-42 (236)
441 PRK13585 1-(5-phosphoribosyl)- 21.4 6E+02 0.013 27.2 10.1 79 891-993 150-238 (241)
442 cd01948 EAL EAL domain. This d 21.4 3.5E+02 0.0075 28.4 8.1 93 874-988 136-239 (240)
443 PRK07239 bifunctional uroporph 21.4 6.9E+02 0.015 28.9 11.2 116 856-996 8-137 (381)
444 PRK06843 inosine 5-monophospha 21.3 8.2E+02 0.018 28.8 11.5 72 888-982 201-284 (404)
445 TIGR01163 rpe ribulose-phospha 21.1 5.1E+02 0.011 26.9 9.2 56 918-996 43-99 (210)
446 PRK13566 anthranilate synthase 21.0 1.9E+02 0.0041 36.8 6.6 52 857-910 524-575 (720)
447 PRK05637 anthranilate synthase 20.9 1.3E+02 0.0027 32.0 4.5 49 860-910 2-50 (208)
448 COG4999 Uncharacterized domain 20.9 4.8E+02 0.01 25.2 7.6 113 699-830 8-121 (140)
449 cd04731 HisF The cyclase subun 20.7 4.7E+02 0.01 28.1 9.0 75 883-982 142-222 (243)
450 PRK05286 dihydroorotate dehydr 20.7 1.1E+02 0.0023 35.3 4.1 47 954-1000 289-342 (344)
451 COG2022 ThiG Uncharacterized e 20.5 6.1E+02 0.013 27.5 9.1 84 873-982 120-210 (262)
452 PRK04128 1-(5-phosphoribosyl)- 20.5 6.3E+02 0.014 27.1 9.8 83 890-997 30-118 (228)
453 cd03823 GT1_ExpE7_like This fa 20.5 9.6E+02 0.021 26.1 11.9 106 861-1000 222-329 (359)
454 PRK09016 quinolinate phosphori 20.5 3.8E+02 0.0083 30.1 8.2 68 885-981 211-278 (296)
455 PRK07695 transcriptional regul 20.5 5.4E+02 0.012 26.8 9.2 66 889-980 102-174 (201)
456 PRK04128 1-(5-phosphoribosyl)- 20.4 3E+02 0.0066 29.6 7.3 74 883-982 136-210 (228)
457 PRK08649 inosine 5-monophospha 20.3 1E+03 0.022 27.6 12.0 66 891-982 142-214 (368)
458 PRK14076 pnk inorganic polypho 20.3 5.9E+02 0.013 31.4 10.7 102 860-1001 291-405 (569)
459 PF04131 NanE: Putative N-acet 20.1 6.4E+02 0.014 26.5 9.1 86 871-982 81-172 (192)
460 PF01081 Aldolase: KDPG and KH 20.1 2.5E+02 0.0054 29.6 6.3 61 909-992 36-96 (196)
461 PRK13141 hisH imidazole glycer 20.1 3.6E+02 0.0077 28.3 7.7 43 861-910 1-43 (205)
462 PF06697 DUF1191: Protein of u 20.0 84 0.0018 34.8 2.9 64 7-70 182-248 (278)
No 1
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.3e-62 Score=621.77 Aligned_cols=487 Identities=29% Similarity=0.446 Sum_probs=388.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001846 368 MQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447 (1006)
Q Consensus 368 l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~ 447 (1006)
+++++.++++++++|++|++++||||||||++|+|++++|....++++++++++.+..++++|..+|+++||++|++++.
T Consensus 433 L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~ 512 (924)
T PRK10841 433 LQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQ 512 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555667788889999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred ccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeec
Q 001846 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAER 527 (1006)
Q Consensus 448 ~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~ 527 (1006)
+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 513 ~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~-- 590 (924)
T PRK10841 513 LKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD-- 590 (924)
T ss_pred ceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe--
Confidence 999999999999999999999999999999999998888888899999999999999999999999999888776531
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+.|+
T Consensus 591 -------------------------------------------------------------------------~~~l~i~ 597 (924)
T PRK10841 591 -------------------------------------------------------------------------GDYLSFR 597 (924)
T ss_pred -------------------------------------------------------------------------CCEEEEE
Confidence 1247899
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhh
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFED 687 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~ 687 (1006)
|.|||+|||++.++++|+||+|.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+......
T Consensus 598 V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~---- 673 (924)
T PRK10841 598 VRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYP---- 673 (924)
T ss_pred EEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCccccc----
Confidence 9999999999999999999999988777788899999999999999999999999999999999999998643211
Q ss_pred ccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcccc
Q 001846 688 IKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS 767 (1006)
Q Consensus 688 ~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~ 767 (1006)
.........+.+++++.+++........+++++|+.+...... .....++++.|......
T Consensus 674 -----~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~---------------~~~~~d~~i~d~~~~~~ 733 (924)
T PRK10841 674 -----QKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQ---------------EPTPEDVLITDDPVQKK 733 (924)
T ss_pred -----ccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEcccc---------------cCCcCcEEEEcCccccc
Confidence 1122345678889999999999999999999999998765421 11234666665432111
Q ss_pred CCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCC
Q 001846 768 GEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVP 847 (1006)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~ 847 (1006)
.... ..+.+.... ....... .....+.+|.....+...+.+...............
T Consensus 734 ~~~~-------------------~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 789 (924)
T PRK10841 734 WQGR-------------------AVITFCRRH--IGIPLEI---APGEWVHSTATPHELPALLARIYRIELESDDSANAL 789 (924)
T ss_pred cchh-------------------hhhhhhhcc--ccChhhc---ccCceeeccCChHHHHHHHHHHhhcccccccccccc
Confidence 0000 000000000 0000000 011244566666666666655543222111111100
Q ss_pred CCCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001846 848 NGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIR 927 (1006)
Q Consensus 848 ~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR 927 (1006)
...........+.+|||||||+.++..+..+|++.|+.|.++.||.+|++.+.. +.||+||||++||+|||++++++||
T Consensus 790 ~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-~~~DlVl~D~~mP~mdG~el~~~ir 868 (924)
T PRK10841 790 PSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLTDVNMPNMDGYRLTQRLR 868 (924)
T ss_pred cccccccccCCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 000001112245799999999999999999999999999999999999999976 5699999999999999999999999
Q ss_pred hhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 928 QMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 928 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
+.. ..+|||++|++...+...+|+++||++||.||++.++|.+.|.++...
T Consensus 869 ~~~----------------------~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 869 QLG----------------------LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred hcC----------------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 742 258999999999999999999999999999999999999999988654
No 2
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=9.2e-62 Score=622.36 Aligned_cols=506 Identities=35% Similarity=0.487 Sum_probs=414.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccce
Q 001846 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELE 451 (1006)
Q Consensus 372 k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~ 451 (1006)
+.+++++++.|++|++++||||||||++|+|+++++....+++.+++|++.+..++++|..+||++++++|+++++..++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 44566777889999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccc
Q 001846 452 AVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVK 531 (1006)
Q Consensus 452 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 531 (1006)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998887764221
Q ss_pred cccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEec
Q 001846 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611 (1006)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 611 (1006)
..+...+.|+|.||
T Consensus 439 ------------------------------------------------------------------~~~~~~~~i~V~D~ 452 (919)
T PRK11107 439 ------------------------------------------------------------------SNTKVQLEVQIRDT 452 (919)
T ss_pred ------------------------------------------------------------------CCCeeEEEEEEEEe
Confidence 01223588999999
Q ss_pred CCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhcccc
Q 001846 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQS 691 (1006)
Q Consensus 612 G~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~ 691 (1006)
|+|||++.++++|+||+|.+.++++.++|+||||+|||++++.|||+|+++|.+|+||+|+|++|+.......
T Consensus 453 G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~------- 525 (919)
T PRK11107 453 GIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPI------- 525 (919)
T ss_pred CCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccc-------
Confidence 9999999999999999999998888899999999999999999999999999999999999999986543211
Q ss_pred CCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCc
Q 001846 692 KSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS 771 (1006)
Q Consensus 692 ~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~ 771 (1006)
........+.|.+++++|+++..+......|+.+|+.+..+.+..+. ....||++++|.+........
T Consensus 526 ~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~l------------~~~~~d~il~~~~~~~~~~~~ 593 (919)
T PRK11107 526 IDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQL------------PEAHYDILLLGLPVTFREPLT 593 (919)
T ss_pred cccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHHh------------ccCCCCEEEecccCCCCCCHH
Confidence 11122345778999999999999999999999999999999887772 124689999987654322211
Q ss_pred chhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCC
Q 001846 772 GFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSS 851 (1006)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 851 (1006)
.......... . ..+.++++...............| .+.++.||+....+...+........... . .
T Consensus 594 ~~~~~~~~~~----~-~~~~~i~~~~~~~~~~~~~~~~~g-~~~~l~kp~~~~~l~~~l~~~~~~~~~~~-----~---~ 659 (919)
T PRK11107 594 MLHERLAKAK----S-MTDFLILALPCHEQVLAEQLKQDG-ADACLSKPLSHTRLLPALLEPCHHKQPPL-----L---P 659 (919)
T ss_pred HHHHHHHhhh----h-cCCcEEEEeCCcchhhHHHHhhCC-CceEECCCCCHHHHHHHHHHhhccccccc-----c---c
Confidence 1111111111 1 123344444444444443444444 45789999999988888765442111100 0 0
Q ss_pred ccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhc
Q 001846 852 FHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMES 931 (1006)
Q Consensus 852 ~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~ 931 (1006)
.......+.+|||||||+.++..++.+|+..|+.|.++.+|.+|++.+.. ..||+||||+.||+|||+++++.||+...
T Consensus 660 ~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~lr~~~~ 738 (919)
T PRK11107 660 PTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ-RPFDLILMDIQMPGMDGIRACELIRQLPH 738 (919)
T ss_pred ccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHhccc
Confidence 00112235689999999999999999999999999999999999999876 56999999999999999999999997421
Q ss_pred hhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
..++|||++|++...+...+|+++||++|+.||++.++|...|.+++...
T Consensus 739 --------------------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 739 --------------------NQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred --------------------CCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 23689999999999999999999999999999999999999999997643
No 3
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-63 Score=612.07 Aligned_cols=774 Identities=31% Similarity=0.333 Sum_probs=560.6
Q ss_pred CcceeeEeeecCCCcccccccCCchhhHHHHHHHHhcCCceeeeceeecCCcccceEEEeecccCCCCCCCCHHHHH-Hh
Q 001846 168 DEYAPVMFYQEPMSHVKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERI-KA 246 (1006)
Q Consensus 168 ~~y~pv~~~~~~~~~~~~~D~~s~~~~r~~i~~Ar~tg~~~lt~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~-~~ 246 (1006)
.+|.|..|..+++.....+|+..+-+++.+...++-+...+++.++........+...++-++..-++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999888999999999999999999999999999998887777777777777776665554444443 33
Q ss_pred hccceecccchhHHHHHHHhhhccCccEEEEEeccCCCCCcccccCCCCCCCcccccccccccccccchhhhhhhhh--c
Q 001846 247 TAGYIGGPFDVESLVENLLGQLAGNQAILVNVYDMTNASDPLIMYGDQNQDGDMSLLHESELDFGDSFRKHKMICRY--H 324 (1006)
Q Consensus 247 ~~G~v~~~~~v~~l~~~ll~~~~~~~~~~v~v~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 324 (1006)
...+-...|+...+....+.....+......++..........+|+....... ..+.....+..+-+.+...+++ .
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~--~~~~lP~~~~~~~~~~~~~~~~~~~ 161 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALN--LVEVLPLLLLVKNRELELKQKVLHA 161 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccc--cccccchhhccchhhhhhhcccccc
Confidence 33455556666666666555555455555555555555555556655443322 2344455566666666776763 2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhhHHHHHH
Q 001846 325 QKASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQ--FLATVSHEIRTPMNGILG 402 (1006)
Q Consensus 325 ~~~~~~w~~~~~~~~~~~i~ll~~~~~~~~~~~~~~~~~~~~~l~~~k~~ae~a~~aKs~--Fla~vSHELRTPLn~I~g 402 (1006)
......+.++...........++.+.......+...++....++.+....++++...+++ |+++++|||||||++ |
T Consensus 162 ~~l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~ 239 (786)
T KOG0519|consen 162 AELDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--G 239 (786)
T ss_pred hhhhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--C
Confidence 233344555555555444444555556666666666667777788888888888888999 999999999999999 8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEE
Q 001846 403 MLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVF 482 (1006)
Q Consensus 403 ~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~ 482 (1006)
+...+.++..+.+++.+....+.++..++.++|+++|.+++++|.+++...+|+++.+++.+++.+.+.+..++..+...
T Consensus 240 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~ 319 (786)
T KOG0519|consen 240 MLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLD 319 (786)
T ss_pred cceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEe
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCcccccCCCCcccccccc
Q 001846 483 VSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGL 562 (1006)
Q Consensus 483 ~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 562 (1006)
.+..+|..+.+|+.+++||+.|+++||||||..|+|++++++.+......+.. ..
T Consensus 320 ~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l----~~--------------------- 374 (786)
T KOG0519|consen 320 LSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVL----LR--------------------- 374 (786)
T ss_pred cCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHH----Hh---------------------
Confidence 99999999999999999999999999999999999999998876543211100 00
Q ss_pred ccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhh-hccccccCCCCCCCCCCCc
Q 001846 563 EAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQER-VFMPFMQADSSTSRHYGGT 641 (1006)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~-iF~pF~q~~~s~s~~~gGt 641 (1006)
++....|..+........................+......+.+.|+|+||+.+.... +|.+|.|++.+.++.++|+
T Consensus 375 --~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt 452 (786)
T KOG0519|consen 375 --AKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGT 452 (786)
T ss_pred --hhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCC
Confidence 0000000000000000000000000000000001112345688999999999999998 9999999999999999999
Q ss_pred cccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHH
Q 001846 642 GIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYH 721 (1006)
Q Consensus 642 GLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~ 721 (1006)
|+|++||++++++|+|.+.+.+....|++|+|++++.............. .......+.|..+.+.+.+..+..+.++.
T Consensus 453 ~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 531 (786)
T KOG0519|consen 453 GLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKR-LFQIILDFNGMLALLIDTKLGREQIFQVL 531 (786)
T ss_pred cccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhh-hhhhhhhhcchhhhhhccccCcceeEEEE
Confidence 99999999999999999999999999999999999977655433221111 12233456677777777766666677777
Q ss_pred HHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcch-hHhhhh-cCCCCCcCCCCeEEEEecCC
Q 001846 722 LNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGF-NAQLLD-WKPNGHVFKLPKLILLATNI 799 (1006)
Q Consensus 722 l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ill~~~~ 799 (1006)
.+.+|+.++...++..+.-...... ..-...+.++.+.+.......- ...... .+........+..+.++...
T Consensus 532 ~~~~~~~vd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (786)
T KOG0519|consen 532 AELLGISVDVSLSLSLAFWFLDLSL-----SDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCP 606 (786)
T ss_pred ecccCccccccccchhhhhhccccc-----ccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccch
Confidence 7778888887765544443221111 1124455666666654432211 111111 11111111234445555555
Q ss_pred ChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCccccccccceEEEecCcHHHHHHHHHHH
Q 001846 800 SKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGAL 879 (1006)
Q Consensus 800 ~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L 879 (1006)
......+...+...+....+|.....+..++...+................+.....++|++|||||||.+|+++++.+|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l 686 (786)
T KOG0519|consen 607 ENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGML 686 (786)
T ss_pred hhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHH
Confidence 55555555555555556667777777888877766543222222222222233566788999999999999999999999
Q ss_pred hhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEE
Q 001846 880 KKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959 (1006)
Q Consensus 880 ~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIa 959 (1006)
+++|++++++.||.||++++++++.||+||||+|||+|||+|++++||+.+ .+++||||
T Consensus 687 ~~~g~~~~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvA 745 (786)
T KOG0519|consen 687 KKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVA 745 (786)
T ss_pred HHhCCeeEeecCcHHHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEE
Confidence 999999999999999999999778999999999999999999999999853 26999999
Q ss_pred EecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 960 MTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 960 lTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
|||++.+++.++|+++|||+||+|||+.+.|..+|.+++.
T Consensus 746 lTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 746 LTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999875
No 4
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=1.1e-55 Score=566.32 Aligned_cols=427 Identities=35% Similarity=0.521 Sum_probs=336.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
++.+.+++.++..|++|++++||||||||++|+|++++|.+..++++++++++.+..++++|..+||++|+++|+|++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~ 464 (921)
T PRK15347 385 AEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQM 464 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34455667778889999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeecc
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~ 528 (1006)
.++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|+|.|++...
T Consensus 465 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~--- 541 (921)
T PRK15347 465 TLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH--- 541 (921)
T ss_pred cceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc---
Confidence 99999999999999999999999999999999999888888899999999999999999999999999988877431
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 542 ------------------------------------------------------------------------~~~~~i~V 549 (921)
T PRK15347 542 ------------------------------------------------------------------------EQQLCFTV 549 (921)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12578999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhc
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDI 688 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~ 688 (1006)
+|||+|||++.+++||+||+|.+.. .+|+||||+||++++++|||+|+++|.+|+||+|+|++|+.......
T Consensus 550 ~D~G~Gi~~~~~~~if~~f~~~~~~----~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~---- 621 (921)
T PRK15347 550 EDTGCGIDIQQQQQIFTPFYQADTH----SQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPE---- 621 (921)
T ss_pred EEcCCCCCHHHHHHHhcCcccCCCC----CCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCcc----
Confidence 9999999999999999999987643 36999999999999999999999999999999999999986422100
Q ss_pred cccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccC
Q 001846 689 KQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISG 768 (1006)
Q Consensus 689 ~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~ 768 (1006)
...+. ..........+..+|..+......... ..
T Consensus 622 ----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-------------- 655 (921)
T PRK15347 622 ----------PLKGE--------LSAPLALHRQLSAWGITCQPGHQNPAL--------------LD-------------- 655 (921)
T ss_pred ----------ccccc--------ccchHHHHHHHHHcCCcccccccchhh--------------cc--------------
Confidence 00000 001112223344444332211000000 00
Q ss_pred CCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCC
Q 001846 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPN 848 (1006)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~ 848 (1006)
+. ...-| ..+...+.+......... ....+
T Consensus 656 ---------------------~~------------------------~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~- 685 (921)
T PRK15347 656 ---------------------PE------------------------LAYLP---GRLYDLLQQIIQGAPNEP-VINLP- 685 (921)
T ss_pred ---------------------hh------------------------hhhcc---hHHHHHHHHHhhcCCCcc-cccCC-
Confidence 00 00000 011111222111110000 00000
Q ss_pred CCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Q 001846 849 GSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ 928 (1006)
Q Consensus 849 ~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~ 928 (1006)
....+.+|||||||+.++..+..+|+..|+.|.+|.+|.+|++.+.. +.||+||||++||+|||++++++||+
T Consensus 686 ------~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlil~D~~mp~~~G~~~~~~ir~ 758 (921)
T PRK15347 686 ------LQPWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-HRFDLVLMDIRMPGLDGLETTQLWRD 758 (921)
T ss_pred ------CCcccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 01234589999999999999999999999999999999999999876 56999999999999999999999997
Q ss_pred hhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 929 ~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
.+.. ...++|||++|++...+...+|+++||++||.||++.++|..+|.+++.
T Consensus 759 ~~~~------------------~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 759 DPNN------------------LDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred chhh------------------cCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4321 1247899999999999999999999999999999999999999987653
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=2.5e-55 Score=552.86 Aligned_cols=376 Identities=35% Similarity=0.546 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001846 367 KMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEAR 446 (1006)
Q Consensus 367 ~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g 446 (1006)
+.++++++++.++++|++|+++|||||||||++|.|+++++.++.++++++++++.+..++++|..++|++++++|++++
T Consensus 268 e~k~~e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~ 347 (779)
T PRK11091 268 ERKRYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERR 347 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCC
Confidence 33444555667777899999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEee
Q 001846 447 KLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAE 526 (1006)
Q Consensus 447 ~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~ 526 (1006)
++.++..++|+.++++++...+...+..+++.+.+..++..|..+.+|+.+|+||+.||++||+||++.|.|.|++....
T Consensus 348 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~ 427 (779)
T PRK11091 348 KLQLDNQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE 427 (779)
T ss_pred CcEEEeeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc
Confidence 99999999999999999999999999999999999988888888999999999999999999999999998888775310
Q ss_pred ccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEE
Q 001846 527 RTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMV 606 (1006)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 606 (1006)
...+.|
T Consensus 428 --------------------------------------------------------------------------~~~~~i 433 (779)
T PRK11091 428 --------------------------------------------------------------------------GDMLTF 433 (779)
T ss_pred --------------------------------------------------------------------------CCEEEE
Confidence 124789
Q ss_pred EEEecCCCCChhHHhhhccccccC-CCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchh
Q 001846 607 CVEDTGIGIPLSAQERVFMPFMQA-DSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVF 685 (1006)
Q Consensus 607 ~V~DtG~GI~~e~~~~iF~pF~q~-~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~ 685 (1006)
+|.|||+|||++.+++||+|||+. +.+.++..+||||||+|||+||+.|||+|+++|.+|+||+|+|++|+........
T Consensus 434 ~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~ 513 (779)
T PRK11091 434 EVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVE 513 (779)
T ss_pred EEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccc
Confidence 999999999999999999999999 5666666899999999999999999999999999999999999999753211000
Q ss_pred hhccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcc
Q 001846 686 EDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765 (1006)
Q Consensus 686 ~~~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~ 765 (1006)
. .
T Consensus 514 -----------~--------------------------------------------------------~----------- 515 (779)
T PRK11091 514 -----------D--------------------------------------------------------A----------- 515 (779)
T ss_pred -----------c--------------------------------------------------------c-----------
Confidence 0 0
Q ss_pred ccCCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCC
Q 001846 766 ISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRG 845 (1006)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~ 845 (1006)
+. .. +
T Consensus 516 ------------------------~~---------------------~~-----~------------------------- 520 (779)
T PRK11091 516 ------------------------FD---------------------ED-----D------------------------- 520 (779)
T ss_pred ------------------------cc---------------------cc-----c-------------------------
Confidence 00 00 0
Q ss_pred CCCCCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHH
Q 001846 846 VPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRR 925 (1006)
Q Consensus 846 ~~~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~ 925 (1006)
....+.+|||||||+.++..+..+|+..|+.|.++.+|++|++.+.. +.||+||||++||+|||++++++
T Consensus 521 ---------~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~Dlvl~D~~mp~~~G~e~~~~ 590 (779)
T PRK11091 521 ---------MPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP-DEYDLVLLDIQLPDMTGLDIARE 590 (779)
T ss_pred ---------ccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEcCCCCCCCHHHHHHH
Confidence 00123589999999999999999999999999999999999999875 56999999999999999999999
Q ss_pred HHhhhchhhhhhccCCCCcCCCcccCCCC-CcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 926 IRQMESKANEQMMNGGSSVDGTAKRDELH-LPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 926 IR~~e~~~~~~~~~~~~~~~~~~~~~~~~-~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
||+..+ ..+ +|||++|++...+ ..+|+++||++||.||++.++|...|.+++..
T Consensus 591 ir~~~~--------------------~~~~~~ii~~ta~~~~~-~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 591 LRERYP--------------------REDLPPLVALTANVLKD-KKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHhccc--------------------cCCCCcEEEEECCchHh-HHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 997421 124 4999999987654 67899999999999999999999999999854
No 6
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=5e-55 Score=563.17 Aligned_cols=371 Identities=40% Similarity=0.642 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
+.+.++++++.+|++|++++||||||||++|+|++++|.+..+++.+++|++.|..++++|..+|+++|+++++|++...
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~ 531 (968)
T TIGR02956 452 KARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLS 531 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 34566788889999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...+
T Consensus 532 ~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~--- 608 (968)
T TIGR02956 532 ISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLND--- 608 (968)
T ss_pred eeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcC---
Confidence 99999999999999999999999999999999998888888999999999999999999999999999888775321
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
...+.|+|.
T Consensus 609 -----------------------------------------------------------------------~~~~~i~V~ 617 (968)
T TIGR02956 609 -----------------------------------------------------------------------DSSLLFEVE 617 (968)
T ss_pred -----------------------------------------------------------------------CCeEEEEEE
Confidence 011789999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhcc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~ 689 (1006)
|||+|||++.+++||+||+|.+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+...+....
T Consensus 618 D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~---- 691 (968)
T TIGR02956 618 DTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED---- 691 (968)
T ss_pred eCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc----
Confidence 9999999999999999999998 3455689999999999999999999999999999999999999753210000
Q ss_pred ccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCC
Q 001846 690 QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769 (1006)
Q Consensus 690 ~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~ 769 (1006)
. .
T Consensus 692 -------~--------------------------------------------------------~--------------- 693 (968)
T TIGR02956 692 -------S--------------------------------------------------------A--------------- 693 (968)
T ss_pred -------c--------------------------------------------------------c---------------
Confidence 0 0
Q ss_pred CcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCC
Q 001846 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849 (1006)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 849 (1006)
..+ |
T Consensus 694 ------------------~~~-----------------------------~----------------------------- 697 (968)
T TIGR02956 694 ------------------TLT-----------------------------V----------------------------- 697 (968)
T ss_pred ------------------ccc-----------------------------c-----------------------------
Confidence 000 0
Q ss_pred CCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Q 001846 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929 (1006)
Q Consensus 850 ~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~ 929 (1006)
....+.+|||||||+.++..+..+|+..|+.|.++.||.+|++.+.. +.||+||||++||+|||++++++||+.
T Consensus 698 -----~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvl~D~~mp~~~g~~~~~~ir~~ 771 (968)
T TIGR02956 698 -----IDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-HAFDLALLDINLPDGDGVTLLQQLRAI 771 (968)
T ss_pred -----ccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHhC
Confidence 00123479999999999999999999999999999999999999976 569999999999999999999999974
Q ss_pred hchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 930 e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
... ..++|||++|++...+...+|+++||++|+.||++.++|...|.+++.
T Consensus 772 ~~~-------------------~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 772 YGA-------------------KNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred ccc-------------------cCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 321 113899999999999999999999999999999999999999999874
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=3.1e-53 Score=543.21 Aligned_cols=365 Identities=35% Similarity=0.562 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc
Q 001846 372 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK--LE 449 (1006)
Q Consensus 372 k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~--~~ 449 (1006)
+.+++++.++|++|++++||||||||++|+|++++|.+...++.++++++.+..++++|..+|++++++++++.+. +.
T Consensus 434 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~ 513 (914)
T PRK11466 434 RAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVS 513 (914)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcce
Confidence 3445667788999999999999999999999999999888888999999999999999999999999999999884 56
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++...
T Consensus 514 ~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~---- 589 (914)
T PRK11466 514 VSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD---- 589 (914)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc----
Confidence 7778999999999999999999999999999998888888899999999999999999999999999888776421
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
...+.|+|.
T Consensus 590 -----------------------------------------------------------------------~~~~~i~V~ 598 (914)
T PRK11466 590 -----------------------------------------------------------------------GEQWLVEVE 598 (914)
T ss_pred -----------------------------------------------------------------------CCEEEEEEE
Confidence 124779999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhcc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIK 689 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~ 689 (1006)
|||+|||++.++++|+||++.+. ..+|+||||+|||++++.|||+|.+.|.+++||+|+|++|+.......
T Consensus 599 D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~----- 669 (914)
T PRK11466 599 DSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPV----- 669 (914)
T ss_pred ECCCCCCHHHHHHHhchhhcCCC----CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccc-----
Confidence 99999999999999999998643 347999999999999999999999999999999999999874311000
Q ss_pred ccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCC
Q 001846 690 QSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE 769 (1006)
Q Consensus 690 ~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~ 769 (1006)
+.
T Consensus 670 -------~~----------------------------------------------------------------------- 671 (914)
T PRK11466 670 -------PK----------------------------------------------------------------------- 671 (914)
T ss_pred -------cc-----------------------------------------------------------------------
Confidence 00
Q ss_pred CcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCC
Q 001846 770 DSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNG 849 (1006)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 849 (1006)
.+ . .|
T Consensus 672 -------------------~~----------------------~-----~~----------------------------- 676 (914)
T PRK11466 672 -------------------TV----------------------N-----QA----------------------------- 676 (914)
T ss_pred -------------------cc----------------------c-----cc-----------------------------
Confidence 00 0 00
Q ss_pred CCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Q 001846 850 SSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929 (1006)
Q Consensus 850 ~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~ 929 (1006)
....+++|||||||+.++..+..+|+..|+.|.++.+|.+|++.+...+.||+||||++||+|||++++++||+.
T Consensus 677 -----~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~ 751 (914)
T PRK11466 677 -----VRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ 751 (914)
T ss_pred -----cccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 001245899999999999999999999999999999999999988654569999999999999999999999963
Q ss_pred hchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 930 e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+++|||++|++...+...+|+++|+++||.||++.++|...|.+++..
T Consensus 752 ----------------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 752 ----------------------YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred ----------------------CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 2368999999999999999999999999999999999999999998754
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=1e-48 Score=514.53 Aligned_cols=380 Identities=32% Similarity=0.512 Sum_probs=317.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 365 FHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQ-RDYAQTAQICGKALIALINEVLDRAKI 443 (1006)
Q Consensus 365 ~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q-~~~l~~i~~s~~~L~~LIndlLd~ski 443 (1006)
.+++++.+.+++++..++++|++++||||||||++|.|++++|.+...++++ .++++.+..++++|..+|+++++++++
T Consensus 695 ~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~ 774 (1197)
T PRK09959 695 IHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKI 774 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666677788899999999999999999999999999766555444 568899999999999999999999999
Q ss_pred hcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEE
Q 001846 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVH 523 (1006)
Q Consensus 444 e~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~ 523 (1006)
+++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+.+.
T Consensus 775 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~ 854 (1197)
T PRK09959 775 ESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTS 854 (1197)
T ss_pred hcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 99999999999999999999999999999999999987654333446899999999999999999999999998777664
Q ss_pred EeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceE
Q 001846 524 LAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVT 603 (1006)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (1006)
.... ..+...
T Consensus 855 ~~~~----------------------------------------------------------------------~~~~~~ 864 (1197)
T PRK09959 855 LGHI----------------------------------------------------------------------DDNHAV 864 (1197)
T ss_pred Eeee----------------------------------------------------------------------cCCceE
Confidence 3210 011235
Q ss_pred EEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccc
Q 001846 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEY 683 (1006)
Q Consensus 604 l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~ 683 (1006)
+.|+|.|||+|||++.+++||+||++.+.. +..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+......
T Consensus 865 ~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~--~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~ 942 (1197)
T PRK09959 865 IKMTIMDSGSGLSQEEQQQLFKRYSQTSAG--RQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQV 942 (1197)
T ss_pred EEEEEEEcCCCCCHHHHHHhhccccccccC--CCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchh
Confidence 789999999999999999999999987543 345799999999999999999999999999999999999997421100
Q ss_pred hhhhccccCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccC
Q 001846 684 VFEDIKQSKSEDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKD 763 (1006)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~ 763 (1006)
.. . .
T Consensus 943 ~~-----------~--------------------------------------------------------~--------- 946 (1197)
T PRK09959 943 AT-----------V--------------------------------------------------------E--------- 946 (1197)
T ss_pred cc-----------c--------------------------------------------------------c---------
Confidence 00 0 0
Q ss_pred ccccCCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccC
Q 001846 764 CWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAG 843 (1006)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~ 843 (1006)
+. . . .|.
T Consensus 947 --------------------------~~----------~---------~------~~~---------------------- 953 (1197)
T PRK09959 947 --------------------------AK----------A---------E------QPI---------------------- 953 (1197)
T ss_pred --------------------------cc----------c---------c------ccc----------------------
Confidence 00 0 0 000
Q ss_pred CCCCCCCCccccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHH
Q 001846 844 RGVPNGSSFHQGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT 923 (1006)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~ 923 (1006)
......+||||||++.++..+..+|+..|+.+.++.++.+|++.+.. +.||+||+|++||+|||++++
T Consensus 954 -----------~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~ 1021 (1197)
T PRK09959 954 -----------TLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM-QHYDLLITDVNMPNMDGFELT 1021 (1197)
T ss_pred -----------ccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHH
Confidence 00012489999999999999999999999999999999999999876 569999999999999999999
Q ss_pred HHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 924 RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 924 ~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
++||+. ..++|||++|++...+...+|+++|+++||.||++.++|...|.++..
T Consensus 1022 ~~i~~~----------------------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1022 RKLREQ----------------------NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred HHHHhc----------------------CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 999963 236899999999999999999999999999999999999999987754
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=4.3e-46 Score=465.19 Aligned_cols=240 Identities=21% Similarity=0.364 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001846 366 HKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445 (1006)
Q Consensus 366 ~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~ 445 (1006)
+++++++.+++++.++|++|+++|||||||||++|.|++++|.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777888889999999999999999999999999999988777888999999999999999999999999999999
Q ss_pred CCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEe
Q 001846 446 RKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLA 525 (1006)
Q Consensus 446 g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~ 525 (1006)
|+..++..+|++.+++++++..+...++.|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|++...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766677899999999999999999999999999988877532
Q ss_pred eccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEE
Q 001846 526 ERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLM 605 (1006)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 605 (1006)
.. ....+.
T Consensus 594 ~~------------------------------------------------------------------------~~~~l~ 601 (894)
T PRK10618 594 ES------------------------------------------------------------------------SPDRLT 601 (894)
T ss_pred cC------------------------------------------------------------------------CCcEEE
Confidence 10 113578
Q ss_pred EEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 606 VCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
|+|.|||+|||++.+++||+||++.+.+ .+..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+.
T Consensus 602 I~V~DtG~GI~~e~l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 602 IRILDTGAGVSIKELDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred EEEEECCCCCCHHHHHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 9999999999999999999999986543 34557999999999999999999999999999999999999974
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2.3e-43 Score=445.61 Aligned_cols=365 Identities=21% Similarity=0.306 Sum_probs=292.4
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDT-DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~~-~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.+.++|++++||||||||++|.|+++++.+. ......+++++.+..+++++..+|++++++++...+ ...++|+.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 3567899999999999999999999988653 334567789999999999999999999999985543 35689999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC-CCeEEEEEEEeeccccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE-RGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++++++..+... ..+++.+.+..++. +..+.+|+.+|+||+.||++||+||++ .|.|.|++..........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~----- 596 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV----- 596 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc-----
Confidence 9999999988754 45788888877654 446899999999999999999999985 467777765432110000
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
. ......+...+.|+|+|+|+|||+
T Consensus 597 -~------------------------------------------------------~~~~~~~~~~v~i~V~D~G~GI~~ 621 (828)
T PRK13837 597 -L------------------------------------------------------SHGVLPPGRYVLLRVSDTGAGIDE 621 (828)
T ss_pred -c------------------------------------------------------ccccCCCCCEEEEEEEECCCCCCH
Confidence 0 000011234688999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhccccCCCCCC
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSEDLP 697 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~~~~~~~ 697 (1006)
+.+++||+||++.+. +|+||||+|||++++.|||+|++.|.+|+||+|+|++|.....+.. +
T Consensus 622 e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~------------~ 683 (828)
T PRK13837 622 AVLPHIFEPFFTTRA------GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVA------------P 683 (828)
T ss_pred HHHHHhhCCcccCCC------CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCC------------c
Confidence 999999999996432 7999999999999999999999999999999999999864311000 0
Q ss_pred CCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhh
Q 001846 698 PGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQL 777 (1006)
Q Consensus 698 ~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~ 777 (1006)
..
T Consensus 684 ~~------------------------------------------------------------------------------ 685 (828)
T PRK13837 684 QA------------------------------------------------------------------------------ 685 (828)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCcccccc
Q 001846 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLL 857 (1006)
Q Consensus 778 ~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 857 (1006)
. ..| ...+ ..
T Consensus 686 ----------------------------------~-----~~~-----------------------~~~~--------~~ 695 (828)
T PRK13837 686 ----------------------------------F-----FGP-----------------------GPLP--------RG 695 (828)
T ss_pred ----------------------------------c-----CCC-----------------------cccC--------CC
Confidence 0 000 0000 01
Q ss_pred ccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCC-CCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhh
Q 001846 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-HCFDACFMDIQMPEMDGFEATRRIRQMESKANEQ 936 (1006)
Q Consensus 858 ~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~-~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~ 936 (1006)
.+.+|||||||+.++..+...|+..||.+..+.++.+|++.+... ..||+||+ .||.|+|+++++.|+..
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~------- 766 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA------- 766 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh-------
Confidence 245899999999999999999999999999999999999988642 34899999 79999999999999863
Q ss_pred hccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
...+|||++|++.......+++++| ++||.||++.++|..+|.+++...
T Consensus 767 ---------------~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 767 ---------------APTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred ---------------CCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 2368999999999999999999999 999999999999999999988643
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-41 Score=356.07 Aligned_cols=227 Identities=27% Similarity=0.491 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSST--QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 378 a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~--q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
.++.+..|+|++||||||||+++.++++.|.+...... ...++..-+...++|.+||||+|.+||++.....++.+.+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34456789999999999999999999999988766544 5678999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCE-EEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeeccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIE-LAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTD 533 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~-l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~ 533 (1006)
|+...+.+++..|.....+..+. +.-.+ +.-+.++..||.++-||+.|+++||+||++.| +|.+.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998875555444 32233 34467899999999999999999999999775 677766421
Q ss_pred cccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCC
Q 001846 534 AKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613 (1006)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 613 (1006)
...+.|+|.|.|.
T Consensus 372 -------------------------------------------------------------------~~~v~iSI~D~G~ 384 (459)
T COG5002 372 -------------------------------------------------------------------ETWVEISISDQGL 384 (459)
T ss_pred -------------------------------------------------------------------CcEEEEEEccCCC
Confidence 1257899999999
Q ss_pred CCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcccc
Q 001846 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680 (1006)
Q Consensus 614 GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~ 680 (1006)
|||.+++++||++||++|..++|..|||||||+|+|.+|+.|||.||.+|..|+||+|+|+||+...
T Consensus 385 gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 385 GIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred CCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998653
No 12
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=1.9e-37 Score=373.51 Aligned_cols=370 Identities=19% Similarity=0.236 Sum_probs=286.8
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDT-----DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~-----~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
...+|++.++||+||||+.|.|+++++... .......++++.+....+++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 345799999999999999999999988532 1234456788889999999999999999998743 3455678
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDA 534 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~ 534 (1006)
++..+++.+...+. ....+++.+.+..++..+ .+.+|+.+++|++.||++||+||+..| .|.|++........
T Consensus 238 ~l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAE-RTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHH-HhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 99999998877654 344577888777666555 378899999999999999999998654 45444432110000
Q ss_pred ccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCC
Q 001846 535 KDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614 (1006)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 614 (1006)
.+. ..........+.|+|.|+|+|
T Consensus 312 -----------------------------------~~~---------------------~~~~~~~~~~~~i~v~D~G~G 335 (540)
T PRK13557 312 -----------------------------------DLA---------------------MYHGLPPGRYVSIAVTDTGSG 335 (540)
T ss_pred -----------------------------------ccc---------------------cccCCCCCCEEEEEEEcCCCC
Confidence 000 000011234578999999999
Q ss_pred CChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccchhhhccccCCC
Q 001846 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYVFEDIKQSKSE 694 (1006)
Q Consensus 615 I~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~~~~~~~~~~~ 694 (1006)
||++.++++|+||++.+. ..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|........
T Consensus 336 i~~~~~~~if~~~~~~~~----~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~---------- 401 (540)
T PRK13557 336 MPPEILARVMDPFFTTKE----EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENP---------- 401 (540)
T ss_pred CCHHHHHhccCCCcccCC----CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCC----------
Confidence 999999999999996542 346999999999999999999999999999999999999863211000
Q ss_pred CCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchh
Q 001846 695 DLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFN 774 (1006)
Q Consensus 695 ~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~ 774 (1006)
++.
T Consensus 402 --~~~--------------------------------------------------------------------------- 404 (540)
T PRK13557 402 --EQE--------------------------------------------------------------------------- 404 (540)
T ss_pred --CCC---------------------------------------------------------------------------
Confidence 000
Q ss_pred HhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCccc
Q 001846 775 AQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQ 854 (1006)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 854 (1006)
+ ++ . ..
T Consensus 405 ---------------~----------------------------~~------------------------~-------~~ 410 (540)
T PRK13557 405 ---------------P----------------------------KA------------------------R-------AI 410 (540)
T ss_pred ---------------C----------------------------CC------------------------c-------cc
Confidence 0 00 0 00
Q ss_pred cccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC-CCHHHHHHHHHhhhchh
Q 001846 855 GLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE-MDGFEATRRIRQMESKA 933 (1006)
Q Consensus 855 ~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~e~~~ 933 (1006)
....+++||||||++..+..+..+|+..|+.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+.
T Consensus 411 ~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~---- 486 (540)
T PRK13557 411 DRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRR---- 486 (540)
T ss_pred ccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHh----
Confidence 01124589999999999999999999999999999999999998865335999999999997 9999999999863
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccCCC
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKPL 1003 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~~~ 1003 (1006)
.+.+|||++|..........++..|+++|+.||++.++|...+.+++.....
T Consensus 487 ------------------~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 538 (540)
T PRK13557 487 ------------------QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGPTG 538 (540)
T ss_pred ------------------CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCCCC
Confidence 2358999999998888888899999999999999999999999998876543
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.4e-36 Score=349.09 Aligned_cols=244 Identities=25% Similarity=0.368 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHH
Q 001846 358 IVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-------STQRDYAQTAQICGKAL 430 (1006)
Q Consensus 358 ~~~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-------~~q~~~l~~i~~s~~~L 430 (1006)
..++.+.+.++++.+.++++..+++.+|++.+||||||||++|.+++++|.+...+ +..+++++.+..+.+.|
T Consensus 127 ~~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (380)
T PRK09303 127 LLQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEI 206 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666667777899999999999999999999999999754322 23567889999999999
Q ss_pred HHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHh
Q 001846 431 IALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSV 510 (1006)
Q Consensus 431 ~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAi 510 (1006)
..+|++++++++.+.+...++..++|+.+++++++..+...+..+++.+.+.++...| .+.+|+.+|+||+.||++||+
T Consensus 207 ~~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAi 285 (380)
T PRK09303 207 ERLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAI 285 (380)
T ss_pred HHHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877766 489999999999999999999
Q ss_pred ccCCC-CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhH
Q 001846 511 KFTER-GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASI 589 (1006)
Q Consensus 511 KfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1006)
||++. |.|.|.+...
T Consensus 286 k~~~~~~~I~i~~~~~---------------------------------------------------------------- 301 (380)
T PRK09303 286 KYTPEGGTITLSMLHR---------------------------------------------------------------- 301 (380)
T ss_pred hcCCCCceEEEEEEec----------------------------------------------------------------
Confidence 99976 4565554210
Q ss_pred hhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCce
Q 001846 590 INMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGS 669 (1006)
Q Consensus 590 ~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~Gs 669 (1006)
+...+.|+|.|+|+|||++.+++||+||++.+. .+..+|+||||+|||++|+.|||+|++.|.+++|+
T Consensus 302 ----------~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt 369 (380)
T PRK09303 302 ----------TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGS 369 (380)
T ss_pred ----------CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 112478999999999999999999999998875 34557999999999999999999999999999999
Q ss_pred EEEEEEEcc
Q 001846 670 TFSFTAVFG 678 (1006)
Q Consensus 670 tF~f~lp~~ 678 (1006)
+|+|++|..
T Consensus 370 ~f~i~lP~~ 378 (380)
T PRK09303 370 CFHFTLPVY 378 (380)
T ss_pred EEEEEEecC
Confidence 999999974
No 14
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=353.43 Aligned_cols=224 Identities=25% Similarity=0.434 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcC--CCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeE
Q 001846 377 AADVAKSQFLATVSHEIRTPMNGILGMLALLLDT--DLSST-QRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV 453 (1006)
Q Consensus 377 ~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~--~l~~~-q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~ 453 (1006)
+.++.++.|++++||||||||++|+|.++.|... .++++ +.+.+..|...+.+|.++|++|||++|+++|.++++..
T Consensus 655 e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~ 734 (890)
T COG2205 655 ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLD 734 (890)
T ss_pred HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 3456789999999999999999999999999753 45555 67899999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCe-EEEEEEEeecccccc
Q 001846 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH-IFVKVHLAERTMVKT 532 (1006)
Q Consensus 454 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~~ 532 (1006)
+..+.+++.+++.........+. +.+.+++++| .+..|+..|.|||.||+.||+||++.|. |.|.+...
T Consensus 735 ~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~------- 804 (890)
T COG2205 735 WVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE------- 804 (890)
T ss_pred hhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe-------
Confidence 99999999999987766555444 5666677776 5899999999999999999999998875 77766532
Q ss_pred ccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecC
Q 001846 533 DAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTG 612 (1006)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 612 (1006)
...++|+|.|+|
T Consensus 805 --------------------------------------------------------------------~~~v~~~V~DeG 816 (890)
T COG2205 805 --------------------------------------------------------------------RENVVFSVIDEG 816 (890)
T ss_pred --------------------------------------------------------------------cceEEEEEEeCC
Confidence 135789999999
Q ss_pred CCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcccc
Q 001846 613 IGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKC 680 (1006)
Q Consensus 613 ~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~ 680 (1006)
+|||++++++||++||+.+.... ..|+|||||||+.+|+.|||+|++.+.+++|++|+|++|....
T Consensus 817 pGIP~~~~~~IFD~F~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 817 PGIPEGELERIFDKFYRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CCCChhHHHHhhhhhhcCCCCCC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 99999999999999999987443 5799999999999999999999999999999999999998653
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=327.12 Aligned_cols=220 Identities=28% Similarity=0.365 Sum_probs=190.2
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDL-SSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
++.+|++++||||||||++|.|+++++.+... ++....+++.+..++++|..++++++++++++.+.......++++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45689999999999999999999999976543 34567789999999999999999999999999988777778899999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDAKDET 538 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~~ 538 (1006)
+++.+...+...+ .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------- 346 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------- 346 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-------------
Confidence 9998887766555 77888888776553 488999999999999999999999764 566554321
Q ss_pred ccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChh
Q 001846 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLS 618 (1006)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e 618 (1006)
...+.|+|+|+|+|||++
T Consensus 347 --------------------------------------------------------------~~~~~i~V~D~G~Gi~~~ 364 (430)
T PRK11006 347 --------------------------------------------------------------PQGAEFSVEDNGPGIAPE 364 (430)
T ss_pred --------------------------------------------------------------CCEEEEEEEEcCCCCCHH
Confidence 124679999999999999
Q ss_pred HHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 619 AQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 619 ~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
.++++|+|||+.+.+.++..+|+||||+|||++++.|||+|+++|.+++||+|+|++|..
T Consensus 365 ~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 365 HIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred HHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 999999999999887777788999999999999999999999999999999999999854
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=4.2e-32 Score=319.31 Aligned_cols=226 Identities=27% Similarity=0.361 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
++..+.++....+.+|++++||||||||+.|.+.++++.+. ++.+. +.+....++|..++++++.+++++.+...
T Consensus 200 ~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~~~~ 274 (433)
T PRK10604 200 QMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRPQNE 274 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 34445555566788999999999999999999999988632 22222 23777889999999999999999999998
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
+...++++.+++++++..+......+++++.+..+ +..+.+|+..++||+.||++||+||+. |.|.|++...+
T Consensus 275 ~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~--- 347 (433)
T PRK10604 275 LHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG--- 347 (433)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC---
Confidence 88999999999999999999888888877765322 335778999999999999999999995 67777764321
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
..+.|+|+
T Consensus 348 ------------------------------------------------------------------------~~~~I~V~ 355 (433)
T PRK10604 348 ------------------------------------------------------------------------NQACLIVE 355 (433)
T ss_pred ------------------------------------------------------------------------CEEEEEEE
Confidence 24779999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|+|+|||++.++++|+||++.+.++++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 356 D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 356 DDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred EcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 9999999999999999999999888777889999999999999999999999999999999999999754
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=8.7e-31 Score=311.65 Aligned_cols=220 Identities=22% Similarity=0.312 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 376 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 376 e~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
++......+|++++||||||||+.|.++++.|.+..... ..+....+.....++..+++++++.++.+++...+....+
T Consensus 260 ~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~-~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~ 338 (485)
T PRK10815 260 RERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMS-VEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELH 338 (485)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccee
Confidence 334445578999999999999999999999987654221 2233455677788999999999999999999888888899
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
++..+++++++.+...+..+++++.+.+++.. .+.+|+..|.||+.||++||+||+.. .|.|++...
T Consensus 339 ~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~---------- 405 (485)
T PRK10815 339 SVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT---------- 405 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe----------
Confidence 99999999999999999999999998876543 57799999999999999999999965 355544321
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
...+.|+|+|+|+||
T Consensus 406 -----------------------------------------------------------------~~~v~I~V~D~G~GI 420 (485)
T PRK10815 406 -----------------------------------------------------------------DEHLHIVVEDDGPGI 420 (485)
T ss_pred -----------------------------------------------------------------CCEEEEEEEECCCCc
Confidence 124779999999999
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
|++.++++|+||++.+.+ .+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 421 ~~e~~~~iF~~f~~~~~~----~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 421 PESKRELIFDRGQRADTL----RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred CHHHHHHHhCCcccCCCC----CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 999999999999987643 25999999999999999999999999999999999999864
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=100.00 E-value=3.4e-31 Score=314.57 Aligned_cols=217 Identities=22% Similarity=0.261 Sum_probs=168.3
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
...++++.++|||||||++|.|++++|.....+..+......+......+..++..+.++. .........++|+..+
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~dl~~~ 351 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVI---PQSPQEIVVPVNLNQI 351 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCcccccccccHHHH
Confidence 3457888899999999999999999997653332233333333433333333333333332 2333455678999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCe---EEEEEEEeeccccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH---IFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~---I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++++..+...+..+++.+.+..++.+| .+.+|+.+|+||+.||++||+||+..|. ..|.+....
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~----------- 419 (494)
T TIGR02938 352 LRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL----------- 419 (494)
T ss_pred HHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe-----------
Confidence 9999999999999999999988877666 4789999999999999999999996652 222222110
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+...+.|+|+|||+|||+
T Consensus 420 --------------------------------------------------------------~~~~~~~~V~D~G~Gi~~ 437 (494)
T TIGR02938 420 --------------------------------------------------------------NGDLIVVSILDSGPGIPQ 437 (494)
T ss_pred --------------------------------------------------------------cCCEEEEEEEeCCCCCCH
Confidence 123578999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
+.+++||+||++.+... ++||||||+|||+||+.|||+|+++|.+++||+|+|++|+
T Consensus 438 ~~~~~iF~~f~~~~~~~---~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 438 DLRYKVFEPFFTTKGGS---RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred HHHHHhcCCCcccCCCC---CCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 99999999999876542 5799999999999999999999999999999999999985
No 19
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-31 Score=299.73 Aligned_cols=263 Identities=26% Similarity=0.427 Sum_probs=214.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH
Q 001846 327 ASTPWTALTTAFFLFVIGLLVGYILYGAAIHIVKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAL 406 (1006)
Q Consensus 327 ~~~~w~~~~~~~~~~~i~ll~~~~~~~~~~~~~~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~el 406 (1006)
...||...-.....-+=..+++.++ +...+|.++....|++|....+|...+||++|.||+.|.+++++
T Consensus 480 ~s~PWs~~ei~~A~~LR~aiv~ivl-----------~~aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~l 548 (750)
T COG4251 480 QSQPWSEVEIEAALELRKAIVGIVL-----------RHAEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQL 548 (750)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 3567876655444333333333322 23456677777888899999999999999999999999999999
Q ss_pred HhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 001846 407 LLDT---DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFV 483 (1006)
Q Consensus 407 L~~~---~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~ 483 (1006)
|... .++++.++++..+.+....+.+||+|++.++++..-...+. +.|+.+++++++...+....+.|+++.+.
T Consensus 549 L~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i~- 625 (750)
T COG4251 549 LSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRIA- 625 (750)
T ss_pred hhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC--CcchHHHHHHHHHhcccccccccceEEec-
Confidence 9754 57788999999999999999999999999999976655554 78999999999999999999999998873
Q ss_pred CCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccc
Q 001846 484 SDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLE 563 (1006)
Q Consensus 484 ~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 563 (1006)
+ +|. +.+|+.++.|++.||+.|||||..++.-.|.|....
T Consensus 626 -~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r------------------------------------- 665 (750)
T COG4251 626 -P-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIEISAER------------------------------------- 665 (750)
T ss_pred -c-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec-------------------------------------
Confidence 3 664 889999999999999999999986653223332211
Q ss_pred cccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccc
Q 001846 564 AADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGI 643 (1006)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGL 643 (1006)
....+.++|.|+|+||++...++||..|.+..+. .+|.|||+
T Consensus 666 ------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~--~~y~gtG~ 707 (750)
T COG4251 666 ------------------------------------QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSR--DEYLGTGL 707 (750)
T ss_pred ------------------------------------cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCch--hhhcCCCc
Confidence 1123679999999999999999999999988653 46789999
Q ss_pred cHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccc
Q 001846 644 GLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCK 681 (1006)
Q Consensus 644 GLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~ 681 (1006)
||+|||+|++.|+|+|+|+|.+|+|+||.|++|....+
T Consensus 708 GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 708 GLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred cHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 99999999999999999999999999999999987644
No 20
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=2.1e-30 Score=307.23 Aligned_cols=233 Identities=24% Similarity=0.416 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
.++..+.+.....+.+|++.+|||+||||+.|.+.++.+.+... +...+.+..+....++|..++++++++++.+.+..
T Consensus 227 n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~ 305 (466)
T PRK10549 227 NQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGAL 305 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 34444555566677899999999999999999999999976432 23345677888888999999999999999999999
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeec
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAER 527 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~ 527 (1006)
.+...++|+.+++++++..+......+++++.+.+++.. .+.+|+.++.|++.||++||+||++. |.|.|.+...
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~-- 381 (466)
T PRK10549 306 AYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQR-- 381 (466)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--
Confidence 999999999999999999999999999999998776543 47799999999999999999999975 5677665421
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+.|+
T Consensus 382 -------------------------------------------------------------------------~~~~~i~ 388 (466)
T PRK10549 382 -------------------------------------------------------------------------DKTLRLT 388 (466)
T ss_pred -------------------------------------------------------------------------CCEEEEE
Confidence 1247799
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|.|+|+|||++.++++|+||++.+.+..+..+|+||||+||+++++.|||++.++|.+++|++|+|++|+..
T Consensus 389 V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 389 FADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred EEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 999999999999999999999998877777789999999999999999999999999999999999999754
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=9.8e-30 Score=301.34 Aligned_cols=214 Identities=27% Similarity=0.434 Sum_probs=183.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTD-LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~-l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.+..+|.+.+|||+||||++|.|+++++.+.. ..++.+++++.+....+++..++++++++++.. ..+..++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 34567999999999999999999999987643 334566788899999999999999999999743 3456789999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++++++..+...++++++.+.+..++..+ .+.+|+.+|.|++.||++||+||+.. |.|.|.+...
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------ 377 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------ 377 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe------------
Confidence 999999999999999999999998776554 47899999999999999999999754 5676665421
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
...+.|+|+|+|+|||+
T Consensus 378 ---------------------------------------------------------------~~~~~i~V~D~G~Gi~~ 394 (457)
T PRK10364 378 ---------------------------------------------------------------GAGVKISVTDSGKGIAA 394 (457)
T ss_pred ---------------------------------------------------------------CCeEEEEEEECCCCCCH
Confidence 12378999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+.++++|++|++.+ .+|+||||+|||++++.|||+|+++|.+++||+|++++|...
T Consensus 395 ~~~~~if~~~~~~k------~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 395 DQLEAIFTPYFTTK------AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred HHHHHHhCccccCC------CCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 99999999998432 358999999999999999999999999999999999999753
No 22
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=4.6e-30 Score=324.36 Aligned_cols=222 Identities=24% Similarity=0.402 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEee
Q 001846 378 ADVAKSQFLATVSHEIRTPMNGILGMLALLLDTD--LSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLF 455 (1006)
Q Consensus 378 a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~--l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~ 455 (1006)
.++.+.+|++.+||||||||++|.|+++++.... ......++++.+.....++..+|++++++++++++.+.++..++
T Consensus 660 ~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~ 739 (895)
T PRK10490 660 REQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWL 739 (895)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Confidence 3456789999999999999999999999886432 22334467888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecccccccc
Q 001846 456 NLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERTMVKTDA 534 (1006)
Q Consensus 456 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~ 534 (1006)
++.+++++++..+......+++.+. +++..| .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 740 ~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~--------- 807 (895)
T PRK10490 740 TLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE--------- 807 (895)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe---------
Confidence 9999999999999888877776664 455544 589999999999999999999999765 566655321
Q ss_pred ccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCC
Q 001846 535 KDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIG 614 (1006)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 614 (1006)
...+.|+|.|+|+|
T Consensus 808 ------------------------------------------------------------------~~~v~I~V~D~G~G 821 (895)
T PRK10490 808 ------------------------------------------------------------------GERLQLDVWDNGPG 821 (895)
T ss_pred ------------------------------------------------------------------CCEEEEEEEECCCC
Confidence 12478999999999
Q ss_pred CChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 615 IPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 615 I~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
||++.+++||+||++.+.. +..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 822 I~~e~~~~IFepF~~~~~~--~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 822 IPPGQEQLIFDKFARGNKE--SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCHHHHHHhcCCCccCCCC--CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 9999999999999987643 23469999999999999999999999999999999999999853
No 23
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=2e-27 Score=270.93 Aligned_cols=211 Identities=23% Similarity=0.400 Sum_probs=182.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHH---HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLA---LLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~e---lL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
..|+.+.+||||+.||.+|.++.+ +|+++...++-.+.+..|..-.++|-.+..++-.|++--... ..++.+.
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 468999999999999999999875 667888888888999999999999999999999998754433 5678999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEeeccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE---RGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
+.|++++.++....+..+..+....++. |.+|.+|+.||+|||.|||+||+..+. ++.|.|.+..
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~----------- 527 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR----------- 527 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe-----------
Confidence 9999999999999999999998876553 568999999999999999999999974 3555554431
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
++..+.|+|.|||+||
T Consensus 528 ----------------------------------------------------------------~~~~v~l~VrDnGpGi 543 (603)
T COG4191 528 ----------------------------------------------------------------EGGQVVLTVRDNGPGI 543 (603)
T ss_pred ----------------------------------------------------------------cCCeEEEEEccCCCCC
Confidence 2235889999999999
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+++...++|+||+..+ .-..|.||||+||+.|++-|||+|.+.+.++.|+.|+++|+
T Consensus 544 ~~e~~~~lFePF~TtK----~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~ 600 (603)
T COG4191 544 APEALPHLFEPFFTTK----PVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELR 600 (603)
T ss_pred CHHHHHhhcCCccccC----cccCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEee
Confidence 9999999999999543 33469999999999999999999999999999999999986
No 24
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=3.6e-29 Score=286.64 Aligned_cols=223 Identities=25% Similarity=0.286 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 001846 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLEL 450 (1006)
Q Consensus 371 ~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l 450 (1006)
+..+.+...+.+.+|++++||||||||++|.+.++++.+... . ..+.+....+++..++++++++++.+......
T Consensus 126 ~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~ 200 (356)
T PRK10755 126 LVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSG 200 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 334444445556789999999999999999999998864322 1 12334455678999999999999988766666
Q ss_pred eeEeecH-HHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecc
Q 001846 451 EAVLFNL-RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERT 528 (1006)
Q Consensus 451 ~~~~~dL-~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~ 528 (1006)
...++++ .+++..+...+...+..+++.+.+... ..+..+.+|+..+++|+.||++||+||++. |.|.|++...
T Consensus 201 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~--- 276 (356)
T PRK10755 201 HYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPES-AADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE--- 276 (356)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccC-CCceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc---
Confidence 6667888 999999998899999999998877422 234568999999999999999999999965 4566655321
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 277 ------------------------------------------------------------------------~~~~~i~V 284 (356)
T PRK10755 277 ------------------------------------------------------------------------DGGAVLAV 284 (356)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12477999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCC-CceEEEEEEEcc
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ-VGSTFSFTAVFG 678 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g-~GstF~f~lp~~ 678 (1006)
+|+|+||+++..+++|+||++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 285 ~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 285 EDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred EECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 999999999999999999998653 346999999999999999999999999998 999999999853
No 25
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=6.5e-29 Score=295.66 Aligned_cols=229 Identities=27% Similarity=0.408 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
++..+.+.....+.+|++.+||||||||+.|.+.++.+...... .+..+.+..+.....++..++++++++++.+.+..
T Consensus 250 ~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~ 329 (482)
T PRK09835 250 HMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQL 329 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555566678899999999999999999999887654332 34455666777778899999999999999999988
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeec
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAER 527 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~ 527 (1006)
.+...++|+.++++++...+...+.++++.+.+..+ +..+.+|+.+|+||+.||++||+||+..| .|.|++...
T Consensus 330 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~-- 404 (482)
T PRK09835 330 IPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV-- 404 (482)
T ss_pred CCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe--
Confidence 888889999999999999999999999999876532 34688999999999999999999999765 476665421
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+.|+
T Consensus 405 -------------------------------------------------------------------------~~~~~i~ 411 (482)
T PRK09835 405 -------------------------------------------------------------------------DHQVQLV 411 (482)
T ss_pred -------------------------------------------------------------------------CCEEEEE
Confidence 1236799
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
|+|+|+|||++.++++|+|||+.+.+.++..+|+||||+||+++++.|||+|+++|.+ +|++|++++|.
T Consensus 412 v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 412 VENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred EEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 9999999999999999999999988776666899999999999999999999999975 69999999985
No 26
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=5.7e-29 Score=293.63 Aligned_cols=226 Identities=30% Similarity=0.431 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 371 ~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
+..+.+.......+|.+++||||||||+.+.+.++.+.....+ ++..++++.+.....+|..++++++++++++.....
T Consensus 230 m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 309 (457)
T TIGR01386 230 MLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLA 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3344444555567899999999999999999999988654433 344567777777889999999999999999999888
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERT 528 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~ 528 (1006)
++..++++.++++++++.+...+.++++++.+.. . ..+.+|+..|.+++.||++||+||+.. |.|.|++...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~--- 382 (457)
T TIGR01386 310 LERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERR--- 382 (457)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEec---
Confidence 8889999999999999999999999998876643 2 468999999999999999999999965 5676665421
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 383 ------------------------------------------------------------------------~~~~~i~v 390 (457)
T TIGR01386 383 ------------------------------------------------------------------------SDEVRVSV 390 (457)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12477999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+|+|+|||++.++++|+|||+.+.+.++..+|+||||+||+++++.|||+|.+.+ +++|++|++++|
T Consensus 391 ~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 391 SNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred EeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999999999999999999999887766778999999999999999999999999 999999999986
No 27
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=6.4e-29 Score=307.18 Aligned_cols=226 Identities=21% Similarity=0.317 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccee
Q 001846 373 VRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEA 452 (1006)
Q Consensus 373 ~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~ 452 (1006)
.+.++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..+.++|..++++++++++++.+....+.
T Consensus 476 ~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~ 555 (703)
T TIGR03785 476 ARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEV 555 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 34445555667899999999999999999999999877777788889999999999999999999999999998888888
Q ss_pred EeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccc
Q 001846 453 VLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVK 531 (1006)
Q Consensus 453 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~ 531 (1006)
.++|+.+++++++..+......+++.+.+.. . +..+.+|+..|.||+.||++||+||++. |.|.|++...
T Consensus 556 ~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~--~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~------ 626 (703)
T TIGR03785 556 EDFDLSEVLSGCMQGYQMTYPPQRFELNIPE--T-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN------ 626 (703)
T ss_pred eeecHHHHHHHHHHHHHHHhhcCCEEEEecC--C-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc------
Confidence 9999999999999999998888887776542 2 3368999999999999999999999965 4565554321
Q ss_pred cccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEec
Q 001846 532 TDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDT 611 (1006)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 611 (1006)
...+.|+|+|+
T Consensus 627 ---------------------------------------------------------------------~~~v~I~V~D~ 637 (703)
T TIGR03785 627 ---------------------------------------------------------------------KSHALLTVSNE 637 (703)
T ss_pred ---------------------------------------------------------------------CCEEEEEEEEc
Confidence 12477999999
Q ss_pred CCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCC-CceEEEEEEE
Q 001846 612 GIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ-VGSTFSFTAV 676 (1006)
Q Consensus 612 G~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g-~GstF~f~lp 676 (1006)
|+|||++.+++||+||++.+.......+|+||||+|||++++.|||+|.+.|.++ +|++|+|++|
T Consensus 638 G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 638 GPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 9999999999999999987765555556899999999999999999999999976 8999999986
No 28
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=2.6e-28 Score=288.71 Aligned_cols=229 Identities=24% Similarity=0.381 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 370 ~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
....+.+.....+.+|++++||||||||++|.+.++++....... ..+..+....++|..+|++++++++.+.. ..
T Consensus 231 ~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~-~~ 306 (461)
T PRK09470 231 QMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQK-NH 306 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Confidence 334445555566778999999999999999999999886543222 24567788899999999999999998765 35
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTM 529 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~ 529 (1006)
++..++++..++++++..+...+..+++.+.+...+ .+..+.+|+..|.+++.||++||+||++ +.|.|+++..
T Consensus 307 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~---- 380 (461)
T PRK09470 307 LERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPP-GPWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVD---- 380 (461)
T ss_pred cccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCC-cceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEE----
Confidence 677789999999999999888888899999887433 2457899999999999999999999996 5566665421
Q ss_pred cccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEE
Q 001846 530 VKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVE 609 (1006)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 609 (1006)
...+.|+|+
T Consensus 381 -----------------------------------------------------------------------~~~~~i~V~ 389 (461)
T PRK09470 381 -----------------------------------------------------------------------KDGLTITVD 389 (461)
T ss_pred -----------------------------------------------------------------------CCEEEEEEE
Confidence 124679999
Q ss_pred ecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 610 DTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 610 DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|+|+||+++.++++|+||++.+...++..+|+||||+||+++++.|||++.+.|.+++||+|++++|+..
T Consensus 390 D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 390 DDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred ECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 9999999999999999999998877777789999999999999999999999999999999999999753
No 29
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=4.3e-29 Score=262.49 Aligned_cols=223 Identities=26% Similarity=0.389 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 379 ~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.++-+.++.+++|||||||.||.|.++||...-.++..++|.+.|-..+++|.+|++-+.-++ .....+..++|++
T Consensus 129 ~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~----~~rp~~r~~~NIH 204 (363)
T COG3852 129 QRAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLG----PQRPGDRVPVNIH 204 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccccchHH
Confidence 345567899999999999999999999998766666689999999999999999998875554 3444566789999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC---C--CeEEEEEEEeeccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE---R--GHIFVKVHLAERTMVKTD 533 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~~~ 533 (1006)
.+++.|..+.+..+ ..+|.|.-++++.+|. +.+|+++|.|++.||+.||...-. . |.|.++-+..-...
T Consensus 205 ~VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~---- 278 (363)
T COG3852 205 EVLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLT---- 278 (363)
T ss_pred HHHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEE----
Confidence 99999998876654 4679999999999997 889999999999999999999864 3 67766543211000
Q ss_pred cccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCC
Q 001846 534 AKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGI 613 (1006)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 613 (1006)
. .+......+.++|.|||+
T Consensus 279 ------------------------------i-------------------------------~g~r~rl~l~leViDNGP 297 (363)
T COG3852 279 ------------------------------I-------------------------------AGTRYRLALPLEVIDNGP 297 (363)
T ss_pred ------------------------------c-------------------------------cCceeEeeeeeEEecCCC
Confidence 0 011123356789999999
Q ss_pred CCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 614 GIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 614 GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|||++.++++|.||... +.+||||||+|+++||..|||.|.++|.|| .|+|++.+|..+
T Consensus 298 GVP~~L~~~lF~P~Vs~------r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 298 GVPPDLQDHLFYPMVSG------REGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCChHHhhhcccccccc------CCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 99999999999999832 347999999999999999999999999997 599999999865
No 30
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=3e-28 Score=287.68 Aligned_cols=221 Identities=19% Similarity=0.314 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001846 371 LKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSS-TQRDYAQTAQICGKALIALINEVLDRAKIEARKLE 449 (1006)
Q Consensus 371 ~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~-~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~ 449 (1006)
+..+.+.......+|++.+||||||||+.+.+.++.+.....++ ....+++.+....+++..++++++++++++.+...
T Consensus 226 ~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~ 305 (449)
T PRK10337 226 LFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNL 305 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 33344444555678999999999999999999998876544333 34568889999999999999999999999988776
Q ss_pred ceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC-eEEEEEEEeecc
Q 001846 450 LEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG-HIFVKVHLAERT 528 (1006)
Q Consensus 450 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G-~I~v~v~~~~~~ 528 (1006)
....++++.+++++++..+...+..+++++.+..++. +..+.+|+..+.+++.||++||+||++.| .|.|++..
T Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~---- 380 (449)
T PRK10337 306 QDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA---- 380 (449)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe----
Confidence 6778899999999999999999999999999887643 34578999999999999999999999764 55544320
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
..++|
T Consensus 381 ---------------------------------------------------------------------------~~i~i 385 (449)
T PRK10337 381 ---------------------------------------------------------------------------RNFTV 385 (449)
T ss_pred ---------------------------------------------------------------------------eEEEE
Confidence 13889
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEE
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~ 674 (1006)
+|+|+|||++.++++|+||++.+.. ..+|+||||+||++++++|||+|+++|.+++|++|+++
T Consensus 386 ~D~G~Gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~ 448 (449)
T PRK10337 386 RDNGPGVTPEALARIGERFYRPPGQ---EATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVS 448 (449)
T ss_pred EECCCCCCHHHHHHhcccccCCCCC---CCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEe
Confidence 9999999999999999999986532 34699999999999999999999999999999999876
No 31
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=4e-28 Score=285.29 Aligned_cols=219 Identities=23% Similarity=0.326 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKL 448 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~ 448 (1006)
.++..+.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....++|..++++++++++.+..
T Consensus 216 n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~-- 288 (435)
T PRK09467 216 NQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQE-- 288 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--
Confidence 344455566677888999999999999999999988877532 2334566778889999999999999987643
Q ss_pred cceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeecc
Q 001846 449 ELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERT 528 (1006)
Q Consensus 449 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~ 528 (1006)
....++++.+++++++..+. ..+..+.+.+++. +..+.+|+..|++|+.||++||+||+ .|.|.|++...
T Consensus 289 -~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~--- 358 (435)
T PRK09467 289 -MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE--- 358 (435)
T ss_pred -CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec---
Confidence 34567899999999987654 3445555555443 44789999999999999999999998 56677665421
Q ss_pred ccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEE
Q 001846 529 MVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCV 608 (1006)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 608 (1006)
...+.|+|
T Consensus 359 ------------------------------------------------------------------------~~~~~i~V 366 (435)
T PRK09467 359 ------------------------------------------------------------------------GKRAWFQV 366 (435)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 12477999
Q ss_pred EecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 609 EDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 609 ~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
.|+|+||+++..+++|+||++.+.+. ..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 367 ~D~G~Gi~~~~~~~~~~~f~~~~~~~--~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 367 EDDGPGIPPEQLKHLFQPFTRGDSAR--GSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred EecCCCcCHHHHHHhcCCcccCCCCC--CCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 99999999999999999999987653 347999999999999999999999999999999999999874
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=2.8e-28 Score=274.37 Aligned_cols=218 Identities=30% Similarity=0.413 Sum_probs=190.5
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDT--DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLR 458 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~ 458 (1006)
.+.+|++.++|||||||++|.++++++... ..++..+++++.+..+.+++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 344566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccc
Q 001846 459 AILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 459 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++..+...+......+++.+.+.++ . +..+.+|+..|.+|+.||++||+||+.. +.|.|++...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 99999999999999999999998773 2 3468999999999999999999999865 4565554321
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
...+.|.|.|+|+|||+
T Consensus 259 ---------------------------------------------------------------~~~~~i~i~d~G~gi~~ 275 (333)
T TIGR02966 259 ---------------------------------------------------------------GGGAEFSVTDTGIGIAP 275 (333)
T ss_pred ---------------------------------------------------------------CCEEEEEEEecCCCCCH
Confidence 11367999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEE
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~l 675 (1006)
+.++++|+||++.+...+...+|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 276 ~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 276 EHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred HHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 9999999999988776666678999999999999999999999999999999999874
No 33
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=1.3e-27 Score=272.54 Aligned_cols=218 Identities=26% Similarity=0.418 Sum_probs=173.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
.+..+|++.+||||||||++|.|+++++.+...++..+++++.+..+++++..++++++++++.. ...+.++..
T Consensus 128 ~~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~ 201 (348)
T PRK11073 128 VAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHK 201 (348)
T ss_pred HHHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHH
Confidence 34578999999999999999999999988766667778899999999999999999999775432 234679999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccC--CCCeEEEEEEEeeccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT--ERGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.|.|.|++.......
T Consensus 202 ~~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~-------- 271 (348)
T PRK11073 202 VAERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT-------- 271 (348)
T ss_pred HHHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc--------
Confidence 9999888777554 467888877766655 478999999999999999999997 3455555442110000
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
..+......+.++|.|+|+|||+
T Consensus 272 ---------------------------------------------------------~~~~~~~~~~~i~v~D~G~Gi~~ 294 (348)
T PRK11073 272 ---------------------------------------------------------LHGERYRLAARIDIEDNGPGIPP 294 (348)
T ss_pred ---------------------------------------------------------cCCccCCceEEEEEEeCCCCCCH
Confidence 00001112467999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
+.++++|+||++.. .+|+||||+|||++++.|||+|+++|.+++ ++|++++|+
T Consensus 295 ~~~~~iF~~~~~~~------~~g~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 295 HLQDTLFYPMVSGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred HHHhhccCCcccCC------CCCccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 99999999998532 369999999999999999999999999884 999999986
No 34
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1.9e-26 Score=273.41 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=191.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll 461 (1006)
..+|++.++||+|||++.+.+.++++.+....+...++++.+....+++..++++++++++++.........++++.+++
T Consensus 256 ~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (475)
T PRK11100 256 VEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAALL 335 (475)
T ss_pred HHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHHH
Confidence 45789999999999999999999998875555667789999999999999999999999999988887788899999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecccccccccccccc
Q 001846 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDETLL 540 (1006)
Q Consensus 462 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~ 540 (1006)
+++...+...+..+++.+.+..+ +..+.+|...|.+++.||+.||+||+.+ |.|.|++...
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~--------------- 397 (475)
T PRK11100 336 EELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD--------------- 397 (475)
T ss_pred HHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc---------------
Confidence 99999999999999999988765 4468899999999999999999999854 6777766421
Q ss_pred CCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHH
Q 001846 541 NGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQ 620 (1006)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~ 620 (1006)
+..+.++|+|+|+|||++.+
T Consensus 398 ------------------------------------------------------------~~~~~i~i~D~G~Gi~~~~~ 417 (475)
T PRK11100 398 ------------------------------------------------------------GEQVALSVEDQGPGIPDYAL 417 (475)
T ss_pred ------------------------------------------------------------CCEEEEEEEECCCCCCHHHH
Confidence 12477999999999999999
Q ss_pred hhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 621 ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 621 ~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
+++|++|++.+.. ....+|+||||+||+++++.|||+|.++|.++.|++|.+++|..
T Consensus 418 ~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 418 PRIFERFYSLPRP-ANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred HHHHHHHccCCCC-CCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 9999999977542 23446999999999999999999999999999999999999863
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-25 Score=249.93 Aligned_cols=217 Identities=42% Similarity=0.687 Sum_probs=185.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccceeEeecHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK-LELEAVLFNLRA 459 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~-~~l~~~~~dL~~ 459 (1006)
.+..|++.++||+|||++.+.+.++++.....+ .++.++..+....+++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999998866544222 267888888899999999999999999998873 444466778999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+++++...+...+..+++.+....+ .+..+.+|+.+++||+.||++||+||++.|.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999999889999886544 3446889999999999999999999998777777764211
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
..+.++|.|+|+||+++.
T Consensus 258 --------------------------------------------------------------~~i~i~V~D~G~Gi~~~~ 275 (336)
T COG0642 258 --------------------------------------------------------------EQVTISVEDTGPGIPEEE 275 (336)
T ss_pred --------------------------------------------------------------CeEEEEEEcCCCCCCHHH
Confidence 157899999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
++++|+||++.+...+ |+||||+||+++++.|||+|.+.|.++.||+|++++|...
T Consensus 276 ~~~if~~~~~~~~~~~----g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 276 LERIFEPFFRTDKSRS----GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred HHHhccCeeccCCCCC----CCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 9999999998765433 9999999999999999999999999999999999999754
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=1.1e-25 Score=273.89 Aligned_cols=214 Identities=25% Similarity=0.457 Sum_probs=185.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
+..+|++.++|||||||+.|.|+++++.+...+....++++.+....++|..++++++++++.+.. ...++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 456899999999999999999999998776666777899999999999999999999999987543 3467999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCC-CCeEEEEEEEeeccccccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTE-RGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------- 530 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------- 530 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-------------
Confidence 9999999998888899999988776655 4789999999999999999999975 466666654211
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
...+.|+|+|+|+|||++.
T Consensus 531 -------------------------------------------------------------~~~~~i~v~D~G~G~~~~~ 549 (607)
T PRK11360 531 -------------------------------------------------------------DGQVAVSIEDNGCGIDPEL 549 (607)
T ss_pred -------------------------------------------------------------CCEEEEEEEeCCCCCCHHH
Confidence 0127899999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
++++|+||++.+ .+|+||||++||+++++|||+|+++|.+|+||+|+|++|+..
T Consensus 550 ~~~~f~~~~~~~------~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 550 LKKIFDPFFTTK------AKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred HhhhcCCceeCC------CCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 999999999643 358999999999999999999999999999999999999854
No 37
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.94 E-value=1.9e-26 Score=241.32 Aligned_cols=186 Identities=31% Similarity=0.519 Sum_probs=138.8
Q ss_pred CCCCCCHHHHHHHHHH--hhhhCCCceeeeeccccChhhHHHHHHHhCccccc-ccCCCCCCCCcceeeEeeecCC--Cc
Q 001846 108 NPSALDQDTFAEYTTR--TAFERPLLSGVAYAPRVVDAQREQFERQHGMTITT-MKSEPSPIRDEYAPVMFYQEPM--SH 182 (1006)
Q Consensus 108 ~~~~v~~~~f~~~~~~--~~~~~p~i~~~~~~~~v~~~~r~~fe~~~~~~i~~-~~~~p~~~~~~y~pv~~~~~~~--~~ 182 (1006)
+|+.|++++|..|++. ++.++|++++++|+++|.+++|++||+++...+.. ....|.+.+++|+||.|..+.. ..
T Consensus 1 ~s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f~i~~~~~~~~~~pv~yi~P~~~n~~ 80 (193)
T PF03924_consen 1 ASEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPDFRIRPDGPRDEYFPVTYIEPLEGNEA 80 (193)
T ss_dssp -S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT------S--BTTS--SEE-BEEEE-GGG--GG
T ss_pred CCCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccceEeeeCCCCCCceEEEEeecchhHHh
Confidence 4789999999999999 99999999999999999999999999997755332 2222577999999998644333 46
Q ss_pred ccccccCCchhhHHHHHHHHhcCCceeeeceeecCCc--ccceEEEeecccCCCCCCCCHHHHHHhhccceecccchhHH
Q 001846 183 VKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH--HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESL 260 (1006)
Q Consensus 183 ~~~~D~~s~~~~r~~i~~Ar~tg~~~lt~p~~l~~~~--~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l 260 (1006)
.+||||+|+|.+|++|.+|++||++++|+|++|++.+ +.|++++.|||..+.++..++++|+.+++||+.++|++++|
T Consensus 81 ~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~v~~~~~l 160 (193)
T PF03924_consen 81 ALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSAVFRVDDL 160 (193)
T ss_dssp GBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEEEEEHHHH
T ss_pred ccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEEEEEHHHH
Confidence 7899999999999999999999999999999999876 58999999999766666678999999999999999999999
Q ss_pred HHHHHhhhccCccEEEEEeccCCCCCcccccCC
Q 001846 261 VENLLGQLAGNQAILVNVYDMTNASDPLIMYGD 293 (1006)
Q Consensus 261 ~~~ll~~~~~~~~~~v~v~d~~~~~~~~~~y~~ 293 (1006)
++.++........+.+.+||.++..++..+|++
T Consensus 161 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 161 FESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp HHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred HHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 999998865346788999998887778788864
No 38
>PRK13560 hypothetical protein; Provisional
Probab=99.94 E-value=2.3e-25 Score=281.58 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 364 DFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKI 443 (1006)
Q Consensus 364 ~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~ski 443 (1006)
+..+.++++++++++..+|++|+++||||||||||+|.|+++++.+...++..+.++..+......+..+++.++..
T Consensus 587 DITerK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 663 (807)
T PRK13560 587 DISERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS--- 663 (807)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 44455556666777788899999999999999999999999998876666667666666555555555444444321
Q ss_pred hcCCccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC----CeEE
Q 001846 444 EARKLELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER----GHIF 519 (1006)
Q Consensus 444 e~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~----G~I~ 519 (1006)
....++++.++++++...+......++..+.+.++...+.....+...+.|||.||++||+||+.. |.|.
T Consensus 664 ------~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~ 737 (807)
T PRK13560 664 ------EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIK 737 (807)
T ss_pred ------ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEE
Confidence 234578999999999999888777776666666655444444566778999999999999999843 4555
Q ss_pred EEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCC
Q 001846 520 VKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGS 599 (1006)
Q Consensus 520 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1006)
|++...
T Consensus 738 i~~~~~-------------------------------------------------------------------------- 743 (807)
T PRK13560 738 VEIREQ-------------------------------------------------------------------------- 743 (807)
T ss_pred EEEEEc--------------------------------------------------------------------------
Confidence 554311
Q ss_pred CceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 600 EDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 600 ~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
....+.|+|+|||+|||++.. ...|+||||+|||+||+.|||+|+++|. +||||+|++|+..
T Consensus 744 ~~~~v~i~V~D~G~GI~~~~~----------------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 744 GDGMVNLCVADDGIGLPAGFD----------------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred CCCEEEEEEEeCCCcCCcccc----------------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 112578999999999998631 1247899999999999999999999994 7999999999753
No 39
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.93 E-value=3.5e-24 Score=265.78 Aligned_cols=203 Identities=22% Similarity=0.323 Sum_probs=162.7
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
+..++.+.++||||||++.+..+++...+...+ +.+.++++.+..+.+++.++++++.+. ....+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHH
Confidence 446788999999999999998888877654333 345678888999999998888776432 2356667899999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeecccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDET 538 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~ 538 (1006)
+++++...+... ...+++. ++++ ..+.+|+.+++||+.||++||+||++. |.|.|++...
T Consensus 548 ll~~~~~~~~~~--~~~~~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~------------- 608 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE------------- 608 (679)
T ss_pred HHHHHHHHhhhh--cCCceEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc-------------
Confidence 999998876542 3344444 3333 358999999999999999999999964 6777766421
Q ss_pred ccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChh
Q 001846 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLS 618 (1006)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e 618 (1006)
+..+.|+|+|+|+|||++
T Consensus 609 --------------------------------------------------------------~~~~~i~V~D~G~Gi~~~ 626 (679)
T TIGR02916 609 --------------------------------------------------------------CGAARIEIEDSGCGMSPA 626 (679)
T ss_pred --------------------------------------------------------------CCEEEEEEEEcCCCcChH
Confidence 124779999999999999
Q ss_pred H-HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 619 A-QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 619 ~-~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
. ++++|+||++.+. +|+||||+|||++++.|||+|+++|.+|+||+|++++|
T Consensus 627 ~i~~~lF~pf~~~~~------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 627 FIRERLFKPFDTTKG------AGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred HHHHhcCCCCCCCCC------CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9 9999999985432 69999999999999999999999999999999999986
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=8.9e-23 Score=246.54 Aligned_cols=195 Identities=25% Similarity=0.320 Sum_probs=137.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll 461 (1006)
..++++.+|||+||||++|.|++++... .+..+++..+ .......++++++..+ . .++
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~-----~~~ 396 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK----------S-----PVI 396 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc----------C-----HHH
Confidence 3467888999999999999999887532 1222333222 1222222333332111 0 112
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCceE-EecHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEeeccccccccccc
Q 001846 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFV-LGDPGRFRQIITNLVGNSVKFTE---RGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 462 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v-~gD~~rl~QIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
...+......++++++.+.+..++.+|... ..+..+|.||+.||++||+||+. .|.|.|++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------ 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------ 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc------------
Confidence 222233345677899999887765555321 23345899999999999999963 45666555321
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
...+.|+|+|+|+|||+
T Consensus 465 ---------------------------------------------------------------~~~~~i~V~D~G~gi~~ 481 (542)
T PRK11086 465 ---------------------------------------------------------------NGWLHCEVSDDGPGIAP 481 (542)
T ss_pred ---------------------------------------------------------------CCEEEEEEEECCCCCCH
Confidence 12477999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+.++++|+||+.. +.+|+||||+|||++++.|||+|+++|.+++|++|+|++|+..
T Consensus 482 ~~~~~iF~~~~~~------~~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 482 DEIDAIFDKGYST------KGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred HHHHHHHhCCCcc------CCCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 9999999999843 2359999999999999999999999999999999999999854
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.89 E-value=1.9e-21 Score=231.87 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=152.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecH
Q 001846 379 DVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLS-STQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457 (1006)
Q Consensus 379 ~~aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL 457 (1006)
+..+.++.+.++||+||||++|.+..+++.+...+ ++.++..+.+...+.++.+.++++++..+- ....++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 34566788999999999999999999988654333 345578889999999999999999865441 22346799
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccc
Q 001846 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 458 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 9999999988875554444444433322 22456778899999999999999999988877766421
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+..+.++|+|+|+|||+
T Consensus 439 ---------------------------------------------------------------~~~i~l~V~DnG~Gi~~ 455 (495)
T PRK11644 439 ---------------------------------------------------------------DERLMLVIEDDGSGLPP 455 (495)
T ss_pred ---------------------------------------------------------------CCEEEEEEEECCCCCCc
Confidence 12478999999999986
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
+. .|+|+||+|||++++.|||+|+++| ++||+|++++|.
T Consensus 456 ~~-------------------~~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 456 GS-------------------GQQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CC-------------------CCCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 41 3689999999999999999999999 789999999984
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.89 E-value=9.2e-22 Score=238.38 Aligned_cols=198 Identities=22% Similarity=0.291 Sum_probs=144.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHH
Q 001846 384 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDD 463 (1006)
Q Consensus 384 ~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~ 463 (1006)
+.+..++||+++||++|.|++++-. ..+..+.+...+..+..+++++...-+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~-------~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE-------YDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 4567799999999999999877531 234566777777777777777765322 1122222
Q ss_pred HHHHHHHHHHhcCCEEEEEeCCCCC-ceEEecHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEeeccccccccccccc
Q 001846 464 VLSLFSEKSRNKGIELAVFVSDKVP-EFVLGDPGRFRQIITNLVGNSVKFT---ERGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 464 v~~~~~~~a~~k~i~l~~~~~~~~p-~~v~gD~~rl~QIl~NLl~NAiKfT---~~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+. .....++++++.+.+.....+. ....+|+..|.||+.||++||+||. +.|...|.+....
T Consensus 399 l~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------- 464 (545)
T PRK15053 399 LF-GKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------- 464 (545)
T ss_pred HH-HHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------
Confidence 22 2235577888988775433321 1246799999999999999999994 3333333333211
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
+...+.|+|+|+|+|||++.
T Consensus 465 ------------------------------------------------------------~~~~~~i~V~D~G~Gi~~~~ 484 (545)
T PRK15053 465 ------------------------------------------------------------EGDDVVIEVADQGCGVPESL 484 (545)
T ss_pred ------------------------------------------------------------CCCEEEEEEEeCCCCcCHHH
Confidence 11247799999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
++++|+|||... ++..+|+||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 485 ~~~iF~~~~~tk---~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 485 RDKIFEQGVSTR---ADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred HHHHhCCCCCCC---CCCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 999999999633 334578999999999999999999999999999999999999753
No 43
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.88 E-value=2e-21 Score=220.62 Aligned_cols=212 Identities=24% Similarity=0.338 Sum_probs=166.9
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHhc---CCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeE
Q 001846 380 VAKSQFLATVSHEIRTPMNGILGMLALLLD---TDLSS---TQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV 453 (1006)
Q Consensus 380 ~aKs~Fla~vSHELRTPLn~I~g~~elL~~---~~l~~---~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~ 453 (1006)
.|.++-..-++|||||||+-|.-.++-|.. ..+++ .-.++.++|.+....+-+|+++.-+|+|+-+ ++.+
T Consensus 484 ~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e 559 (712)
T COG5000 484 AAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLE 559 (712)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCC
Confidence 345555566999999999999999998853 23333 2356889999999999999999999998644 3445
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC---e---EEEEEEEeec
Q 001846 454 LFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG---H---IFVKVHLAER 527 (1006)
Q Consensus 454 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G---~---I~v~v~~~~~ 527 (1006)
+.||++++.+++.++.. ....+.+...+... |.....|+..++|++.||+.||..+-+.- + -.++++.
T Consensus 560 ~~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~--- 633 (712)
T COG5000 560 KSDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL--- 633 (712)
T ss_pred cchHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE---
Confidence 67999999999977643 34567788777666 87888899999999999999999886421 0 0112211
Q ss_pred cccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEE
Q 001846 528 TMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVC 607 (1006)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 607 (1006)
...+..+++.
T Consensus 634 ----------------------------------------------------------------------~~~~g~i~v~ 643 (712)
T COG5000 634 ----------------------------------------------------------------------DDADGRIVVD 643 (712)
T ss_pred ----------------------------------------------------------------------ecCCCeEEEE
Confidence 1123458899
Q ss_pred EEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeC-CCceEEEEEEEc
Q 001846 608 VEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP-QVGSTFSFTAVF 677 (1006)
Q Consensus 608 V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~-g~GstF~f~lp~ 677 (1006)
|.|||.|.|.|.+.|+||||+... ..||||||+|||+|+|-|||.|.+...| -.|....+.+|.
T Consensus 644 V~DNGkG~p~e~r~r~~EPYvTtr------~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 644 VIDNGKGFPRENRHRALEPYVTTR------EKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred EecCCCCCChHHhhhhccCceecc------cccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 999999999999999999999432 2599999999999999999999999884 359999988876
No 44
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=2.1e-20 Score=199.82 Aligned_cols=118 Identities=28% Similarity=0.454 Sum_probs=110.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+|||||||+.....+...|++.||.|.++.+|++|++.+.. . ||+|++|++||+|||+++|++||+.
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~-~dlviLD~~lP~~dG~~~~~~iR~~----------- 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-Q-PDLVLLDLMLPDLDGLELCRRLRAK----------- 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-C-CCEEEEECCCCCCCHHHHHHHHHhh-----------
Confidence 79999999999999999999999999999999999999986 4 9999999999999999999999963
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
....+|||++||..+.+++..++++||||||+|||++++|...|+.+++..
T Consensus 69 ----------~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 ----------KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ----------cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 123689999999999999999999999999999999999999999998764
No 45
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.84 E-value=3.5e-19 Score=195.21 Aligned_cols=209 Identities=22% Similarity=0.342 Sum_probs=172.1
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHH---HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 383 SQFLATVSHEIRTPMNGILGMLAL---LLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 383 s~Fla~vSHELRTPLn~I~g~~el---L~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
.+=+.++||||..|||++..++-- ..+...+.....++..|..-.+++-.+||.+-.|+|-.+++-.+ .|++|.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 466789999999999999887643 34455566678899999999999999999999999988777555 4689999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCC--eEEEEEEEeeccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERG--HIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G--~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
+++.+..++..+.+.+.+.+..-. +. .+|.||..+|+||+.||+-||+..+..- -|.+.+.
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~-------------- 592 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL-------------- 592 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee--------------
Confidence 999999999999999988886533 22 3699999999999999999999987542 3333221
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+.+...+++.|.|+|.|-|-
T Consensus 593 ------------------------------------------------------------~~~~e~l~i~i~DnGqGwp~ 612 (673)
T COG4192 593 ------------------------------------------------------------GTEQEMLRIAIIDNGQGWPH 612 (673)
T ss_pred ------------------------------------------------------------cCcccceEEEEecCCCCCch
Confidence 11233578999999999999
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+..+++|+||... +.-|.|||||||..|++.|.|++.+.|...+|.++.+.+.
T Consensus 613 ~l~dkLl~PFtts------K~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~ 665 (673)
T COG4192 613 ELVDKLLTPFTTS------KEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQ 665 (673)
T ss_pred hHHHHhcCCcccc------cccccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEe
Confidence 9999999999632 2358999999999999999999999999999998877653
No 46
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.82 E-value=4.8e-19 Score=188.15 Aligned_cols=218 Identities=17% Similarity=0.230 Sum_probs=158.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccccCC-CCCC
Q 001846 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKN-PSAL 112 (1006)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~v 112 (1006)
+.|.|+++++.+ +.+.+.+|-+.+...+. ..+-.|++-+|-++..+++.++...+-+.+ |..+|.+ +++|
T Consensus 11 ~~~~pl~~~i~~-LLltl~~~g~a~~~t~~--~sr~~fe~~A~~~~nal~~rv~~~~~~l~s------t~a~f~s~~~~i 81 (348)
T COG3614 11 RVWVPLLVLIVS-LLLTLTAAGLAYSLTLE--QSRTLFERLADRQTNALQQRVDLDQHLLRS------TRAFFRSSTSDI 81 (348)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHhhccCCC
Confidence 457887776554 33333333333333333 344567888999999999999976666333 3334544 4899
Q ss_pred CHHHHHHHHHHhhhhCCCceeeeeccccChhhHHHHHHHhCcccc------cc----cCCC-CCCCCcceeeEeeecCCC
Q 001846 113 DQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTIT------TM----KSEP-SPIRDEYAPVMFYQEPMS 181 (1006)
Q Consensus 113 ~~~~f~~~~~~~~~~~p~i~~~~~~~~v~~~~r~~fe~~~~~~i~------~~----~~~p-~~~~~~y~pv~~~~~~~~ 181 (1006)
|+.+|+.|+. ++...-.++|+-|-..|...+++.||+.+...+. .. ...| ...+.+||||- |.||+.
T Consensus 82 t~~~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~-~iePl~ 159 (348)
T COG3614 82 TRREFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQ-YIEPLN 159 (348)
T ss_pred cHHHHHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeE-eecCCC
Confidence 9999999998 5556677888888888999999999987543321 11 1236 56777788885 677765
Q ss_pred c----ccccccCCchhhHHHHHHHHhcCCceeeeceeecCCc-----ccceEEEeecccCCCCCCCCHHHHHHhhcccee
Q 001846 182 H----VKSLDMMSGEEDRENILRARATGKAVLTRPFRLLGSH-----HLGVVLTFPVYKSKLPPRSTVEERIKATAGYIG 252 (1006)
Q Consensus 182 ~----~~~~D~~s~~~~r~~i~~Ar~tg~~~lt~p~~l~~~~-----~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~ 252 (1006)
+ .+||||+|||.||+|++.|+++++..+|+|++|+|+. ..|+++|.|||....+....+-+ ..++||++
T Consensus 160 ~~N~~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~gq--~~l~Gfl~ 237 (348)
T COG3614 160 YDNRKALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPGQ--AVLVGFLY 237 (348)
T ss_pred ccchhhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcch--hhhhhhHH
Confidence 4 5689999999999999999999999999999999753 26899999999987655443322 46789999
Q ss_pred cccchhHHHHHH
Q 001846 253 GPFDVESLVENL 264 (1006)
Q Consensus 253 ~~~~v~~l~~~l 264 (1006)
..+...+++..+
T Consensus 238 ~~~~~~~~~qs~ 249 (348)
T COG3614 238 LATRFEKLVQSS 249 (348)
T ss_pred HHHHHhhhhhhc
Confidence 999998877643
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.82 E-value=3.7e-19 Score=204.19 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=141.4
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
++.+|++.++||+||||+.|.|+++++.. .....++++.+.....+|..+++++|+.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 44679999999999999999999998862 233456788888899999999999987643 356899999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHhcc---C-CCCeEEEEEEEeeccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD-PGRFRQIITNLVGNSVKF---T-ERGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD-~~rl~QIl~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
+++++..+... +..+.+..+ .+ .+..| ...|.||+.||++||+|| + +.|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99998876532 444544322 11 12222 357999999999999999 4 357777765211
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
.+...+.+.|.|+|.|+
T Consensus 300 ---------------------------------------------------------------~~~~~~~i~v~d~G~~~ 316 (361)
T PRK13559 300 ---------------------------------------------------------------PEGAGFRIDWQEQGGPT 316 (361)
T ss_pred ---------------------------------------------------------------CCCCeEEEEEECCCCCC
Confidence 01234789999999997
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHH-hCCEEEEEeeCCCceEEEEEEEcc
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVEL-MRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~l-mgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
+++ ..|+|+||.||+++++. |||+|++++. +.|++|+|++|..
T Consensus 317 ~~~-------------------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 317 PPK-------------------LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred CCC-------------------CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 653 23789999999999997 9999999997 5799999999963
No 48
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.81 E-value=1.4e-19 Score=171.90 Aligned_cols=109 Identities=33% Similarity=0.618 Sum_probs=97.6
Q ss_pred ecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcc
Q 001846 493 GDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571 (1006)
Q Consensus 493 gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 571 (1006)
||+.+|++|+.||+.||+||++. |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999976 88888775321
Q ss_pred cccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHH
Q 001846 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651 (1006)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~L 651 (1006)
..+.|+|.|+|.|||++.++++|+||++.+. .....+|+||||++|+.+
T Consensus 36 ------------------------------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~ 84 (111)
T PF02518_consen 36 ------------------------------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQI 84 (111)
T ss_dssp ------------------------------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHH
T ss_pred ------------------------------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHH
Confidence 2578999999999999999999999999886 334457899999999999
Q ss_pred HHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 652 VELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 652 v~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
++.|+|+|++.|.++.||+|+|++|+
T Consensus 85 ~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 85 AERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp HHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred HHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 99999999999999999999999986
No 49
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.78 E-value=3.1e-17 Score=199.66 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=140.8
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHH----HhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecH
Q 001846 384 QFLATVSHEIRTPMNGILGMLAL----LLDT--DLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNL 457 (1006)
Q Consensus 384 ~Fla~vSHELRTPLn~I~g~~el----L~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL 457 (1006)
+..+.++||+++|++.++.++.. +... ...+...+.+..+......+...+.+++...+ +...++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 34466999999999988877654 3221 12334455666666667777777777775433 34457899
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccc
Q 001846 458 RAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDE 537 (1006)
Q Consensus 458 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 537 (1006)
.+.+.+++..+... .++.+.+....+.+....+++.++.|++.||+.||+||++.|.|.+.+...
T Consensus 435 ~~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------ 499 (565)
T PRK10935 435 GSALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------ 499 (565)
T ss_pred HHHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc------------
Confidence 99999999988754 334444433211112233455679999999999999999988877766421
Q ss_pred cccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCCh
Q 001846 538 TLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPL 617 (1006)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~ 617 (1006)
+...+.++|.|+|+|||+
T Consensus 500 --------------------------------------------------------------~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 500 --------------------------------------------------------------PDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred --------------------------------------------------------------CCCEEEEEEEECCcCcCC
Confidence 012477999999999996
Q ss_pred hHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 618 SAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 618 e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+. ..|+||||+||+++++.|||+|+++|.+++||+|+|++|...
T Consensus 518 ~~------------------~~~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 518 LK------------------EPEGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred CC------------------CCCCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCCC
Confidence 31 237899999999999999999999999999999999999753
No 50
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.75 E-value=1.5e-16 Score=187.64 Aligned_cols=259 Identities=18% Similarity=0.223 Sum_probs=186.0
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++++++.........+...|+.+..+.+..++...+.. ..||++++|...... ..... +...+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvi~d~~~~~~-~g~~l---~~~i~~~ 71 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--------EQPDIILLDVMMPGM-DGFEV---CRRLKSD 71 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--------cCCCEEEEeCCCCCC-CHHHH---HHHHHcC
Confidence 68999999999999999999999999999999998877643 368999998764321 11112 2222222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccc------cccCCCC---CC-CCCcc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENK------RQAGRGV---PN-GSSFH 853 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~------~~~~~~~---~~-~~~~~ 853 (1006)
......| +++++..............| .+.++.||+....+...+......... +...... +. .....
T Consensus 72 ~~~~~~~-ii~~s~~~~~~~~~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (457)
T PRK09581 72 PATTHIP-VVMVTALDDPEDRVRGLEAG-ADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAY 149 (457)
T ss_pred cccCCCC-EEEEECCCCHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccc
Confidence 2212234 45555544444444444444 457999999998887777654421100 0000000 00 00000
Q ss_pred ccccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchh
Q 001846 854 QGLLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKA 933 (1006)
Q Consensus 854 ~~~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~ 933 (1006)
.......+||||||++..+..+..+|.. ++.+..+.++.+|+..+.. +.||+|++|+.||.|||++++++||+...
T Consensus 150 ~~~~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~-~~~d~vi~d~~~p~~~g~~l~~~i~~~~~-- 225 (457)
T PRK09581 150 ANKDEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE-TNYDLVIVSANFENYDPLRLCSQLRSKER-- 225 (457)
T ss_pred cccccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc-CCCCEEEecCCCCCchHhHHHHHHHhccc--
Confidence 1122356899999999999999999965 5778889999999998765 56999999999999999999999996321
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
.+++|||++|++.+.+...+|+++|++||+.||+++++|...+.+..
T Consensus 226 ------------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~ 272 (457)
T PRK09581 226 ------------------TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQI 272 (457)
T ss_pred ------------------cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHH
Confidence 24799999999999999999999999999999999999998887644
No 51
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.73 E-value=2.9e-16 Score=179.26 Aligned_cols=193 Identities=27% Similarity=0.363 Sum_probs=140.5
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHH
Q 001846 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464 (1006)
Q Consensus 385 Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v 464 (1006)
-+...+||.+|=|+.|.|++++=.- .+..+|++.+...-+. .++.+.. ++. ...+..+
T Consensus 336 aLRaq~HEfmNkLhtI~GLlql~~y----d~a~~~I~~~~~~qq~---~~~~l~~-------~i~--------~~~lAg~ 393 (537)
T COG3290 336 ALRAQSHEFMNKLHTILGLLQLGEY----DDALDYIQQESEEQQE---LIDSLSE-------KIK--------DPVLAGF 393 (537)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHhhhhh---hHHHHHH-------hcc--------cHHHHHH
Confidence 4667899999999999999887421 2334455444433332 2222211 110 1234444
Q ss_pred HHHHHHHHHhcCCEEEEEeCCCCCc-eEEecHHHHHHHHHHHHHHHhccCC----CCeEEEEEEEeeccccccccccccc
Q 001846 465 LSLFSEKSRNKGIELAVFVSDKVPE-FVLGDPGRFRQIITNLVGNSVKFTE----RGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 465 ~~~~~~~a~~k~i~l~~~~~~~~p~-~v~gD~~rl~QIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+--...+|+++|+++.++....+|. .-.-++.-+--|+.||++||+..+. +..|.+.++.
T Consensus 394 LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~--------------- 458 (537)
T COG3290 394 LLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD--------------- 458 (537)
T ss_pred HHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe---------------
Confidence 4445568999999999987665553 1345889999999999999999874 2345444431
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
+...+.++|+|||+|||++.
T Consensus 459 ------------------------------------------------------------~~~~lvieV~D~G~GI~~~~ 478 (537)
T COG3290 459 ------------------------------------------------------------RGDELVIEVADTGPGIPPEV 478 (537)
T ss_pred ------------------------------------------------------------cCCEEEEEEeCCCCCCChHH
Confidence 22468899999999999999
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+++|+.-+..+ +.+|.|.||++||++|+.+||.|+++|+++.||+|++.+|..+
T Consensus 479 ~~~iFe~G~Stk-----~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 479 RDKIFEKGVSTK-----NTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred HHHHHhcCcccc-----CCCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999876322 2478999999999999999999999999999999999999864
No 52
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.72 E-value=3.5e-17 Score=187.60 Aligned_cols=119 Identities=34% Similarity=0.487 Sum_probs=112.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..|.++..+|+..||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~---------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR---------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 3799999999999999999999999999999999999999875 69999999999999999999999974
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||+||++.+.++..++++.||-|||.|||++++|...|++.++.+
T Consensus 74 ------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 74 ------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999999999998753
No 53
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.72 E-value=8.8e-17 Score=151.93 Aligned_cols=111 Identities=34% Similarity=0.551 Sum_probs=104.6
Q ss_pred EEEecCcHHHHHHHHHHHhhcCC-eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGA-TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
||||||++..+..+...|+..|+ .|.++.++.+|++.+.. +.||+||+|+.||+++|.+++++||+..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~d~iiid~~~~~~~~~~~~~~i~~~~---------- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-HPPDLIIIDLELPDGDGLELLEQIRQIN---------- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-STESEEEEESSSSSSBHHHHHHHHHHHT----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-cCceEEEEEeeecccccccccccccccc----------
Confidence 79999999999999999999999 99999999999999976 5699999999999999999999999742
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHH
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 995 (1006)
+++|||++|+..+.....+++++|+++||.||++.++|.++|+
T Consensus 70 ------------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 ------------PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ------------TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ------------ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 3789999999999999999999999999999999999999874
No 54
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.71 E-value=1.2e-15 Score=186.12 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHHHHHH
Q 001846 395 TPMNGILGMLALLL--DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLFSEKS 472 (1006)
Q Consensus 395 TPLn~I~g~~elL~--~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~~~~a 472 (1006)
.+|..+...+..+. ....++..++.+..+....+.+...+.++|...+. ...+.++.+.+++++..|....
T Consensus 375 ~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~ 447 (569)
T PRK10600 375 QSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF 447 (569)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh
Confidence 34455444444342 23345677788999999999999999999987653 2345788999999988887554
Q ss_pred HhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCcccccCC
Q 001846 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSG 552 (1006)
Q Consensus 473 ~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1006)
++.+.+......+.....++..+.||+.|+++||+||++.+.|.|++...
T Consensus 448 ---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~--------------------------- 497 (569)
T PRK10600 448 ---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN--------------------------- 497 (569)
T ss_pred ---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc---------------------------
Confidence 44444443321111112244569999999999999999888877766321
Q ss_pred CCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCC
Q 001846 553 TGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADS 632 (1006)
Q Consensus 553 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~ 632 (1006)
...+.++|.|+|+|||++.
T Consensus 498 ------------------------------------------------~~~~~l~V~D~G~Gi~~~~------------- 516 (569)
T PRK10600 498 ------------------------------------------------QNQVKLSVQDNGCGVPENA------------- 516 (569)
T ss_pred ------------------------------------------------CCEEEEEEEECCCCCCccc-------------
Confidence 1247899999999999752
Q ss_pred CCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 633 STSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 633 s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
..|+|+||+||+++++.|||+|.+.|.+++||+|++++|..
T Consensus 517 -----~~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 517 -----ERSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred -----cCCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 13689999999999999999999999999999999999874
No 55
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.70 E-value=4.9e-17 Score=177.04 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=110.7
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
..+||+|||.+.++..++..|+..||.+..|.||++|++.... +.+|+||+|++||+|||+|++++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-cCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 4589999999999999999999999999999999999998876 45999999999999999999999998533
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...++|||.+||.++.++..+|+.+|+++||.||+++.+|...+...++
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q 134 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999999988865554
No 56
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.70 E-value=3.9e-16 Score=151.47 Aligned_cols=120 Identities=35% Similarity=0.515 Sum_probs=106.7
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHH-HHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAK-AALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~-eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+.+||+|||++.++..+..+|...|+.+.++.+|. +|++.++....||+|++|++||+|||+++++++|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~-------- 76 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR-------- 76 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhC--------
Confidence 46899999999999999999999999999999996 999999863249999999999999999999999973
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHH-HHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEEN-LYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~-L~~~l~~~l~~ 1000 (1006)
...+|+|++|++.......+++++|+++|+.||+...+ |..++.+++..
T Consensus 77 --------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 77 --------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred --------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 23578999999999988888999999999999977666 78888877654
No 57
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.69 E-value=1.4e-16 Score=182.20 Aligned_cols=116 Identities=27% Similarity=0.410 Sum_probs=106.3
Q ss_pred eEEEecCcHHHHHHHHHHHh--hcCCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 861 KILVVDDNGVNRMVAAGALK--KFGATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~--~~G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+||||||.+..|+-++.++. ++|+++ ..|.||++|++.++. ..||+||+||.||+|||+++++.||+..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-~~pDiviTDI~MP~mdGLdLI~~ike~~------- 74 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKEQS------- 74 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhC-------
Confidence 79999999999999999986 678875 589999999999987 5799999999999999999999999743
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
+.+-+|++|++.+-+...+++++|+.|||.||++.++|.++|.++..
T Consensus 75 ---------------p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 75 ---------------PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred ---------------CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999998764
No 58
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-15 Score=173.08 Aligned_cols=124 Identities=31% Similarity=0.457 Sum_probs=114.7
Q ss_pred ccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 858 ~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
..++||||||+..++..+..+|...|+.|..+.+|++|+..+.+. .||+||.|+.||+||||++|+++|+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~-~~dlil~d~~mp~~dg~el~~~lr~~~~------ 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL-PPDLVLLDANMPDMDGLELCTRLRQLER------ 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC-CCcEEEEecCCCccCHHHHHHHHhcccc------
Confidence 457999999999999999999999999999999999999999874 7999999999999999999999998543
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccCC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSKP 1002 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~~ 1002 (1006)
...+|||.+|+..+.+...++++.|++|||+||++..+|...+.+.++...
T Consensus 204 --------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 204 --------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred --------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 347999999999999999999999999999999999999999988887543
No 59
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.66 E-value=1e-15 Score=152.32 Aligned_cols=118 Identities=26% Similarity=0.392 Sum_probs=108.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.-|-|||||...|+.+..+|...||+|.|..|+.+.+..... ..+.++++|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~-~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL-DRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC-CCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 468999999999999999999999999999999999998543 568999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|++.+.....+++++||-|||.|||+.+.|..+|++.+..
T Consensus 74 ------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 74 ------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred ------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHH
Confidence 2368999999999999999999999999999999999999999998763
No 60
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=1.1e-15 Score=155.13 Aligned_cols=117 Identities=24% Similarity=0.400 Sum_probs=106.3
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++....+-+.++++. ||+ |-+|.++++|..++.. ..|||||+|+-||+.+|++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-FKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-hCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999976 777 4589999999999986 568999999999999999999999973
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
+.++-||++||-.+.++..+++.+|+-|||.|||..+.|.++|.+|.+.
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~ 120 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQK 120 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHH
Confidence 2356699999999999999999999999999999999999999998764
No 61
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.62 E-value=4.2e-14 Score=171.24 Aligned_cols=146 Identities=17% Similarity=0.279 Sum_probs=110.9
Q ss_pred ecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHhccCC-------------CCeE
Q 001846 455 FNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQI---ITNLVGNSVKFTE-------------RGHI 518 (1006)
Q Consensus 455 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QI---l~NLl~NAiKfT~-------------~G~I 518 (1006)
+.+..+++..-.+.+..++..|.++.+.+... .+..|+..+.++ |.||+.||++|.- .|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34667777777777777776666665555433 256799999999 6799999999962 2555
Q ss_pred EEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCC
Q 001846 519 FVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGG 598 (1006)
Q Consensus 519 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1006)
.|++..
T Consensus 420 ~l~a~~-------------------------------------------------------------------------- 425 (670)
T PRK10547 420 ILSAEH-------------------------------------------------------------------------- 425 (670)
T ss_pred EEEEEE--------------------------------------------------------------------------
Confidence 555431
Q ss_pred CCceEEEEEEEecCCCCChhHH---------------------hhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCC
Q 001846 599 SEDVTLMVCVEDTGIGIPLSAQ---------------------ERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG 657 (1006)
Q Consensus 599 ~~~~~l~i~V~DtG~GI~~e~~---------------------~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG 657 (1006)
....+.|+|+|+|.||+++.+ +.||+|||..... .+...|+|+||+|||++++.|||
T Consensus 426 -~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG 503 (670)
T PRK10547 426 -QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGG 503 (670)
T ss_pred -cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCC
Confidence 113578999999999998654 3699997644322 22346999999999999999999
Q ss_pred EEEEEeeCCCceEEEEEEEccc
Q 001846 658 QISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 658 ~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
+|.+.|.+|+||+|++++|+..
T Consensus 504 ~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 504 HVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred EEEEEecCCCcEEEEEEEechh
Confidence 9999999999999999999864
No 62
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=8e-15 Score=155.41 Aligned_cols=118 Identities=28% Similarity=0.351 Sum_probs=106.9
Q ss_pred eEEEecCcHHHHHHHHHHHhhcC-CeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFG-ATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G-~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+.-++.+|+..+ ++|. .+.||.+|++.+.. ..||+|+||+.||+|||++++++||+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-~~pdvvl~Dl~mP~~~G~e~~~~l~~~--------- 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-LKPDVVLLDLSMPGMDGLEALKQLRAR--------- 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-cCCCEEEEcCCCCCCChHHHHHHHHHH---------
Confidence 69999999999999999998776 7754 67789999999765 669999999999999999999999953
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.++++|+++|++.+.+...+++++|+++|+.|..++++|.++|+..+...
T Consensus 72 -------------~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 72 -------------GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred -------------CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 34679999999999999999999999999999999999999999987654
No 63
>PLN03029 type-a response regulator protein; Provisional
Probab=99.60 E-value=1.1e-14 Score=155.76 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=105.6
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCC-------------------CCCcEEEEeCCCCCCCH
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSP-------------------HCFDACFMDIQMPEMDG 919 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~-------------------~~~DlIlmDi~MP~mdG 919 (1006)
..+||||||+..++..+..+|+..|+.|.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999988531 13689999999999999
Q ss_pred HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 920 ~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
++++++||+... ...+|||++|+....+...+|+++|+++||.||++..+|...+..++
T Consensus 88 ~e~l~~ir~~~~--------------------~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 88 YDLLKKIKESSS--------------------LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred HHHHHHHHhccc--------------------cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 999999996321 23689999999999999999999999999999999999977766554
No 64
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.56 E-value=4.8e-14 Score=151.31 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=104.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||||||++..+..+...|... |+. |..+.++.+|++.+.. ..||+|++|+.||++||+++++.||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-~~pdlvllD~~mp~~~gle~~~~l~~~~------- 76 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDGRGINLLHELVQAH------- 76 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhcC-------
Confidence 48999999999999999999864 784 6789999999999876 5699999999999999999999999632
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
.++|||++|+....+...+++++|+++|+.||++.++|..+|+++.
T Consensus 77 ---------------~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 77 ---------------YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred ---------------CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 2478999999999999999999999999999999999999998864
No 65
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.55 E-value=7.1e-14 Score=163.74 Aligned_cols=106 Identities=21% Similarity=0.282 Sum_probs=77.3
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCC--CCCCCCccccHHHHHHHHHHhCCE-EEEEeeCCCce-EEEEEEEcc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSST--SRHYGGTGIGLSISKCLVELMRGQ-ISFVSRPQVGS-TFSFTAVFG 678 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--s~~~gGtGLGLsI~k~Lv~lmgG~-I~v~S~~g~Gs-tF~f~lp~~ 678 (1006)
.+.|+|+|||+||+++.++++|++|++.+... ....||+||||++|+.++++|+|. |++.|.++.|+ .|+|++++.
T Consensus 74 ~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id 153 (535)
T PRK04184 74 HYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKID 153 (535)
T ss_pred EEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEec
Confidence 46799999999999999999999997654322 234578999999999999999997 99999999998 899998876
Q ss_pred ccccchhhhccccCCCCCCCCCCCCeEEEEcCc
Q 001846 679 KCKEYVFEDIKQSKSEDLPPGFKGLKAVVVDEK 711 (1006)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~g~r~lvvd~~ 711 (1006)
....... ..... .......+|.++.+..+.
T Consensus 154 ~~kn~g~-i~~~~--~~~~~~~~GT~V~V~l~~ 183 (535)
T PRK04184 154 TKKNEPI-ILERE--EVDWDRWHGTRVELEIEG 183 (535)
T ss_pred ccccCCe-ecccc--ccCCCCCCCEEEEEEECC
Confidence 4321110 00000 001234578888875443
No 66
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.55 E-value=1e-13 Score=147.58 Aligned_cols=116 Identities=27% Similarity=0.377 Sum_probs=107.0
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+++|++++++||+.
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~----------- 70 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQW----------- 70 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcC-----------
Confidence 79999999999999999999999999999999999988765 569999999999999999999999852
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+....+...+++++|+++|+.||++.++|...+..+++.
T Consensus 71 ------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 71 ------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999887754
No 67
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.54 E-value=1.4e-14 Score=152.09 Aligned_cols=115 Identities=30% Similarity=0.494 Sum_probs=102.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+|+||||+...-..+..+|++.|..+-.|+...+|++.+.. +.||+||+|+.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-FKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-cCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 79999999999999999999999999999999999999986 67999999999999999999999998754
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+|||++|++..-.. ..+..-.+|||.||++++.|.++|.+..+.
T Consensus 72 -------------~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 72 -------------AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred -------------cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 589999999865443 344445589999999999999999998754
No 68
>PRK11173 two-component response regulator; Provisional
Probab=99.54 E-value=1.1e-13 Score=149.09 Aligned_cols=117 Identities=22% Similarity=0.326 Sum_probs=107.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 479999999999999999999999999999999999998876 469999999999999999999999852
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+....+....++++|+++|+.||++.++|...+..+++.
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999888887754
No 69
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.53 E-value=1.9e-13 Score=145.49 Aligned_cols=117 Identities=33% Similarity=0.501 Sum_probs=108.2
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.|..+.++.+|+..+.. +.||+|++|+.||+++|++++++||+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~l~~~lr~~----------- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-HLPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999998875 569999999999999999999999862
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+..+.+....++++|+++|+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 2368999999999999999999999999999999999999999988764
No 70
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.52 E-value=2.4e-13 Score=145.13 Aligned_cols=117 Identities=24% Similarity=0.389 Sum_probs=107.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|+..|+.|.++.++.+|++.+.. ..||+|++|+.||+++|+++++.+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~~~~~~g~~~~~~lr~~----------- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNGWDIVRMLRSA----------- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999988765 469999999999999999999999963
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 70 -----------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 1368999999999999999999999999999999999999999988753
No 71
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.51 E-value=2.9e-13 Score=143.72 Aligned_cols=117 Identities=30% Similarity=0.390 Sum_probs=107.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
++||+|||++..+..+...|...|+.|..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-QHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 479999999999999999999999999999999999998875 469999999999999999999999852
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+..+.....+++++|++||+.||++.++|...+..++..
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999998877643
No 72
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.50 E-value=3.7e-13 Score=144.92 Aligned_cols=118 Identities=30% Similarity=0.407 Sum_probs=108.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+|||+||++..+..+...|+..|+.+..+.++.+|++.+.. +.||+|++|+.||.++|+++++.||+.
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 74 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-ESFHLMVLDLMLPGEDGLSICRRLRSQ---------- 74 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 589999999999999999999999999999999999998875 569999999999999999999999962
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+..++..
T Consensus 75 ------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 ------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred ------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 1368999999999999999999999999999999999999999988764
No 73
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.50 E-value=4.2e-13 Score=143.43 Aligned_cols=120 Identities=22% Similarity=0.349 Sum_probs=108.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
++||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~--------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRES--------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcc---------
Confidence 479999999999999999999999999999999999998875 5699999999999999999999998631
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
....+|||++|+..+.+...+++++|+++|+.||++.++|...+..+++.
T Consensus 73 -----------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 12368999999999999999999999999999999999999999887754
No 74
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.50 E-value=4.1e-13 Score=144.81 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=106.8
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-EQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998876 569999999999999999999999861
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+........+++++|+++|+.||++..+|...+...++.
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 147999999999998899999999999999999999999999887754
No 75
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.50 E-value=3.9e-13 Score=145.35 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=104.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+.++.++.+|++.+.. ..||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-ETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998875 569999999999999999999999851
Q ss_pred CCCcCCCcccCCCCCcEEEEecCC-CHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADV-IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~-~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.++|||++|+.. ......+++++|+++|+.||++.++|...++..++.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999854 666778999999999999999999999999887764
No 76
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.49 E-value=4.3e-13 Score=141.97 Aligned_cols=117 Identities=31% Similarity=0.464 Sum_probs=107.3
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|...|+.+.++.++.++++.+.. ..||+|++|+.||+++|+++++.||..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~----------- 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-GHYSLVVLDLGLPDEDGLHLLRRWRQK----------- 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999998875 569999999999999999999999862
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+..+...
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 70 -----------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 2368999999999999999999999999999999999999999887653
No 77
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.49 E-value=4.1e-13 Score=145.39 Aligned_cols=115 Identities=18% Similarity=0.341 Sum_probs=101.8
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcC-CCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+||||||++..+..+..+|... |+.+ ..+.++.+|++.+.. ...||+||+|+.||+|||+++++.||+.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~-------- 74 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-------- 74 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--------
Confidence 7999999999999999999864 6764 478999999988752 3459999999999999999999999863
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.++
T Consensus 75 --------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 75 --------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred --------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2368999999999999999999999999999999999999999864
No 78
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.48 E-value=6e-13 Score=141.12 Aligned_cols=120 Identities=28% Similarity=0.428 Sum_probs=108.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+.. +.||+|++|+.||+++|+++++.||...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~g~~~~~~l~~~~--------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTSGIELCRRLRRRP--------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-cCCCEEEEECCCCCCcHHHHHHHHHccc---------
Confidence 479999999999999999999999999999999999998875 5699999999999999999999998632
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
....+|||++|+........+++++|+++|+.||++.++|...+..++..
T Consensus 73 -----------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 73 -----------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred -----------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 12368999999999999999999999999999999999999999988754
No 79
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.48 E-value=7.2e-13 Score=141.55 Aligned_cols=115 Identities=28% Similarity=0.447 Sum_probs=105.5
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|+..|+.+.++.++.+|++.+.. .||+|++|+.||+++|+++++.||+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~d~vl~d~~~~~~~g~~~~~~l~~~----------- 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGIDTLKELRQT----------- 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc--CCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998753 59999999999999999999999862
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
. .+|||++|+.........++++|+++|+.||++.++|...+..++..
T Consensus 70 -----------~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (232)
T PRK10955 70 -----------H-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred -----------C-CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 1 38999999999999999999999999999999999999999987754
No 80
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.47 E-value=7e-13 Score=145.51 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=105.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+|||||||+..+..+...|... ++.+ .++.+|.+|++.+.. ..||+|++|+.||+|||++++++||+...
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-QQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 48999999999999999999864 5554 479999999999876 56999999999999999999999996321
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|+........+++++|+++|+.||++.++|...|.+++..
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 1247999999999999999999999999999999999999999988653
No 81
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.47 E-value=7.3e-13 Score=141.25 Aligned_cols=118 Identities=27% Similarity=0.393 Sum_probs=107.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC--CCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE--MDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
++||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||+ ++|+++++.||..
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~~~g~~~~~~i~~~-------- 71 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-RLPDLAIIDIGLGEEIDGGFMLCQDLRSL-------- 71 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-CCCCEEEEECCCCCCCCCHHHHHHHHHhc--------
Confidence 379999999999999999999999999999999999998876 46999999999998 5899999999863
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+..+++.
T Consensus 72 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 120 (227)
T TIGR03787 72 --------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRR 120 (227)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 1258999999999999999999999999999999999999999887754
No 82
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.47 E-value=8.7e-13 Score=139.44 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=106.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||||||++..+..+...|+..|+.+.++.++.+++..+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~i~~~----------- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDGRDILREWREK----------- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999998865 569999999999999999999999863
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
.+.+|||++|+....+....++++|+++|+.||++.++|...+..++.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 -----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999999988765
No 83
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.46 E-value=1.3e-12 Score=138.68 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=106.9
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|+..|+.+.++.++.+|+..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-DDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 69999999999999999999999999999999999998865 569999999999999999999999852
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 157999999999999999999999999999999999999999987754
No 84
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.44 E-value=2e-12 Score=120.22 Aligned_cols=109 Identities=47% Similarity=0.769 Sum_probs=92.5
Q ss_pred ecHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcc
Q 001846 493 GDPGRFRQIITNLVGNSVKFTER-GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSW 571 (1006)
Q Consensus 493 gD~~rl~QIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 571 (1006)
+|+..|.+++.|++.||+++... +.|.|.+...
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~---------------------------------------------- 34 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD---------------------------------------------- 34 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------------
Confidence 58899999999999999999976 6666665421
Q ss_pred cccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHH
Q 001846 572 DKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCL 651 (1006)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~L 651 (1006)
...+.+.|.|+|.|++++..+++|.+++.... .....++.|+||++|+.+
T Consensus 35 -----------------------------~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~ 84 (111)
T smart00387 35 -----------------------------GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKL 84 (111)
T ss_pred -----------------------------CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHH
Confidence 12467999999999999999999999987653 233456899999999999
Q ss_pred HHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 652 VELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 652 v~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
++.|+|++.+.+.++.|++|+|.+|+
T Consensus 85 ~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 85 VELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred HHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 99999999999998999999999986
No 85
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.43 E-value=2.2e-12 Score=137.07 Aligned_cols=118 Identities=29% Similarity=0.415 Sum_probs=107.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+...|...|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-QPPDLVILDVGLPDISGFELCRQLLAF---------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 379999999999999999999999999999999999998865 569999999999999999999999963
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+|||++|+.........++++|+++|+.||++.++|...+...+..
T Consensus 73 ------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 73 ------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred ------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 1368999999999888889999999999999999999999999887654
No 86
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.43 E-value=2.2e-12 Score=136.19 Aligned_cols=116 Identities=26% Similarity=0.413 Sum_probs=106.4
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCC
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~ 941 (1006)
||++||++..+..+...|...|+.+..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~------------ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-DDYDLIILDVMLPGMDGWQILQTLRRS------------ 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcc------------
Confidence 5899999999999999999999999999999999998876 569999999999999999999999863
Q ss_pred CCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 942 ~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....++++|+++|+.||++.++|...+...+..
T Consensus 68 ----------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 ----------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred ----------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999887754
No 87
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.43 E-value=2.2e-12 Score=137.33 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=105.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCC-e-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC---CCHHHHHHHHHhhhchhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGA-T-VECAASAKAALDKLQSPHCFDACFMDIQMPE---MDGFEATRRIRQMESKAN 934 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~---mdG~e~~~~IR~~e~~~~ 934 (1006)
.+||||||++..+..+..+|+..++ . +..+.++.++++.+.. ..||+||+|+.||+ ++|++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----- 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRH----- 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-CCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-----
Confidence 4799999999999999999988765 3 6789999999998875 46999999999999 5999999999863
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||++|+.........++++|+++|+.||++.++|..+|..+....
T Consensus 78 -----------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 78 -----------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred -----------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 23689999999999999999999999999999999999999999876543
No 88
>PRK14084 two-component response regulator; Provisional
Probab=99.42 E-value=2.6e-12 Score=139.41 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=99.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhcC-C-eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFG-A-TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G-~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+..+..+|+..+ + .+..+.++++|+..+.. +.||+||+|+.||+|+|+++++.||+..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-~~~dlv~lDi~m~~~~G~~~~~~i~~~~-------- 72 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-NQYDIIFLDINLMDESGIELAAKIQKMK-------- 72 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 69999999999999999999876 3 57789999999998875 5699999999999999999999999632
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...|||++|++.. ...++++.|+++|+.||++.++|.+++.++..
T Consensus 73 --------------~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 73 --------------EPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred --------------CCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2468999998753 45689999999999999999999999998864
No 89
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.42 E-value=3.4e-12 Score=137.02 Aligned_cols=117 Identities=30% Similarity=0.438 Sum_probs=107.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||++||++..+..+...|...|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-EQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 489999999999999999999999999999999999998865 569999999999999999999999851
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.++|||++|+....+....++++|+++|+.||++.++|...+..++..
T Consensus 76 -------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 76 -------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred -------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999887653
No 90
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.41 E-value=4.1e-12 Score=133.03 Aligned_cols=117 Identities=17% Similarity=0.277 Sum_probs=106.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
+||++||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKR---------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-cCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 699999999999999999999999987 69999999998875 569999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+..|||++|+.........++++|+++|+.||++.++|...+..++..
T Consensus 71 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 71 ------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2257899999999999999999999999999999999999999988754
No 91
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.40 E-value=2.2e-12 Score=123.35 Aligned_cols=115 Identities=23% Similarity=0.313 Sum_probs=106.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
+..||||||....+.+...+++.||.|.+|.+.+||+..++. ..|.-.+.|+.|-+-+|+++++.||+..
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-~~PayAvvDlkL~~gsGL~~i~~lr~~~--------- 79 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRERR--------- 79 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-CCCceEEEEeeecCCCchHHHHHHHhcC---------
Confidence 368999999999999999999999999999999999999986 5689999999999999999999999742
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
....||++|++.+..+..++.+.|+++||.||-+.+.+..++.+-
T Consensus 80 -------------~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 80 -------------ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred -------------CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 357799999999999999999999999999999999999888764
No 92
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.40 E-value=3e-12 Score=152.10 Aligned_cols=118 Identities=34% Similarity=0.510 Sum_probs=108.6
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
..+||||||++..+..+...|+..|+.|.++.++.+|+..+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlillD~~~p~~~g~~ll~~i~~~--------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-IHPDVVLMDIRMPEMDGIKALKEMRSH--------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 3589999999999999999999999999999999999998876 569999999999999999999999863
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 74 -------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 74 -------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 236899999999999999999999999999999999999999988765
No 93
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.40 E-value=3.1e-12 Score=152.45 Aligned_cols=117 Identities=28% Similarity=0.376 Sum_probs=108.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+..+|+..|+.|.++.++.+|+..+.. ..||+||+|+.||++||++++++||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-~~~DlvllD~~lp~~dgl~~l~~ir~~---------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEECCCCCCCCHHHHHHHHHhh----------
Confidence 479999999999999999999999999999999999999876 569999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+|||++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 73 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999999987764
No 94
>PRK15115 response regulator GlrR; Provisional
Probab=99.39 E-value=2.8e-12 Score=151.77 Aligned_cols=118 Identities=24% Similarity=0.363 Sum_probs=108.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++.++..+...|+..|+.|.++.++.+|+..+.. ..||+||+|+.||+|||++++++|++.
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-EKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 589999999999999999999999999999999999998876 569999999999999999999999863
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+.+|||++|+....+...+++++|+++|+.||++.++|...|.+.+..
T Consensus 75 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 75 ------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 2368999999999999999999999999999999999999999987753
No 95
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.39 E-value=7.1e-12 Score=130.33 Aligned_cols=114 Identities=21% Similarity=0.337 Sum_probs=102.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+..+...|+.. |+. +..+.++.+++..+.. +.||+|++|+.||+++|+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-RGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999754 565 5688999999998875 56999999999999999999998863
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+|||++|.....+....|+++|+++|+.||++.++|..+|.+++..
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999998764
No 96
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.38 E-value=3.7e-12 Score=150.78 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=103.3
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC-----CCHHHHHHHHHhhhchhhhh
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE-----MDGFEATRRIRQMESKANEQ 936 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-----mdG~e~~~~IR~~e~~~~~~ 936 (1006)
||||||++..+..+...| .||.|.++.++.+|++.+.. ..||+||+|+.||+ |||++++++|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-HEPAVVTLDLGLPPDADGASEGLAALQQILAI------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh-------
Confidence 689999999999999988 79999999999999999976 46999999999996 9999999999863
Q ss_pred hccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
.+++|||++|+..+.+...+++++|++|||.||++.++|...|++.+.
T Consensus 71 ---------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 ---------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 236899999999999999999999999999999999999999887664
No 97
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=3e-12 Score=151.32 Aligned_cols=117 Identities=33% Similarity=0.499 Sum_probs=107.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++..+..+...|+..|+.+.++.++.+|+..+.. ..||+||+|+.||+++|++++++||+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 589999999999999999999999999999999999998875 569999999999999999999999963
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
..++|||++|++...+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 75 ------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 75 ------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999999987764
No 98
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.37 E-value=6.3e-12 Score=135.56 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=97.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCC-e-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGA-T-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+|||+||++..+..+..+|+..|. . +..+.++.+|++.+.. ..||++|+|+.||+|||+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlv~lDi~~~~~~G~~~~~~l~~~-------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-LKPDVVFLDIQMPRISGLELVGMLDPE-------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHhccc--------
Confidence 3799999999999999999998883 3 4578999999998875 469999999999999999999998631
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+||++|++. +...++++.|+++||.||++.++|..++.++..
T Consensus 73 ---------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 ---------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ---------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 134688999875 456789999999999999999999999998864
No 99
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.37 E-value=1.3e-11 Score=129.52 Aligned_cols=119 Identities=20% Similarity=0.383 Sum_probs=105.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.||..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~-------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-RPVDLIIMDIDLPGTDGFTFLKRIKQI-------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHh--------
Confidence 47999999999999999999876 57775 68899999988865 569999999999999999999999862
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+.+|||++|+....+....++++|+++|+.||++.++|..+|..++...
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 75 --------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred --------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 22589999999999899999999999999999999999999998877643
No 100
>PRK09483 response regulator; Provisional
Probab=99.37 E-value=1.1e-11 Score=131.11 Aligned_cols=118 Identities=24% Similarity=0.399 Sum_probs=106.3
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+|||+||++..+..+..+|+.. |+.+. .+.++.+++..+.. ..||+|++|+.||+++|+++++.|++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-NAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999874 88876 78999999998876 569999999999999999999999863
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||++|..........++..|+++|+.||++.++|..++.+++...
T Consensus 73 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 73 -------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 23689999999999999999999999999999999999999999887643
No 101
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=7.4e-12 Score=142.76 Aligned_cols=115 Identities=27% Similarity=0.330 Sum_probs=98.4
Q ss_pred eEEEecCcHHHHHHHHHHH-hhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGAL-KKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L-~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+||||||++..+..+..+| +..|+.+. .+.++++|++.+.. ..||+|+||+.||+|||++++++|++.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-QPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-cCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999 46688876 78999999999876 569999999999999999999999862
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCC---------CHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPF---------EEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~---------~~~~L~~~l~~~l~ 999 (1006)
.++|||++|+... .+...+|+++|+++|+.||+ ..++|.+.|+++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 1489999998754 45567899999999999999 56777777776653
No 102
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.35 E-value=9.8e-12 Score=155.06 Aligned_cols=400 Identities=21% Similarity=0.217 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001846 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL-LDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARK 447 (1006)
Q Consensus 369 ~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~~elL-~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~ 447 (1006)
...++++..+..+...++..++|..|+|++++++.+.++ .+..+...+.-.+++...++..+..+++.-.|.++...|.
T Consensus 373 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt 452 (786)
T KOG0519|consen 373 LRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGT 452 (786)
T ss_pred HhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCC
Confidence 344445555666777888888899999999999998855 4455666666677788888888999999999999988887
Q ss_pred ccceeEeecHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhc--cCCCCe-EEEEEEE
Q 001846 448 LELEAVLFNLRAILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVK--FTERGH-IFVKVHL 524 (1006)
Q Consensus 448 ~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiK--fT~~G~-I~v~v~~ 524 (1006)
-..+...+.|..++...+.........+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..|+ ....+..
T Consensus 453 ~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 532 (786)
T KOG0519|consen 453 GLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLA 532 (786)
T ss_pred cccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEe
Confidence 7888889999999999999998888888888888888888888999999999999999999999 887774 1223322
Q ss_pred eeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEE
Q 001846 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604 (1006)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 604 (1006)
..-. ...+...+. .+.-+. .........+
T Consensus 533 ~~~~-------------------------~~vd~~~~~-------~~~~~~-------------------~~~~~~~~~~ 561 (786)
T KOG0519|consen 533 ELLG-------------------------ISVDVSLSL-------SLAFWF-------------------LDLSLSDLEV 561 (786)
T ss_pred cccC-------------------------ccccccccc-------hhhhhh-------------------cccccccchh
Confidence 1000 000000000 000000 0001111357
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccccccch
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGKCKEYV 684 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~~~~~~ 684 (1006)
.+.+++++.|+....+...|.-|.+....+++..++.+++++.|.+..+.++|.+++.-.. .|..-.-.+-+..+....
T Consensus 562 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~ 640 (786)
T KOG0519|consen 562 CKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSS-DGLPKSPSLCLEACLRVE 640 (786)
T ss_pred eEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccchhhHHhhhccccccccc-ccCCccHHHHHHhhcccc
Confidence 7899999999999999999998888877777656788999999999999999999875211 111111111111110000
Q ss_pred hhh--cc-cc----CC-CCCCCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCc
Q 001846 685 FED--IK-QS----KS-EDLPPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPD 756 (1006)
Q Consensus 685 ~~~--~~-~~----~~-~~~~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~ 756 (1006)
... .+ .. .. ......++|.++|+||++++.+.+....|+.+|..+..+.+..+|+..++ ....||
T Consensus 641 ~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-------~~~~y~ 713 (786)
T KOG0519|consen 641 LNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-------PPHSYD 713 (786)
T ss_pred ccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-------CCCccc
Confidence 000 00 00 00 11233467999999999999999999999999999999999999998877 246899
Q ss_pred EEEEccCccccCCCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 757 IILVEKDCWISGEDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 757 ~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++++|..++ ..|+...... ++.... ..++++.++.+..++...++...|+ |.++.||+....+..++++.+
T Consensus 714 ~ifmD~qMP--~mDG~e~~~~--irk~~~--~~~pIvAlTa~~~~~~~~~c~~~Gm-d~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 714 VIFMDLQMP--EMDGYEATRE--IRKKER--WHLPIVALTADADPSTEEECLEVGM-DGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEEcCCc--ccchHHHHHH--HHHhhc--CCCCEEEEecCCcHHHHHHHHHhCC-ceEEcccccHHHHHHHHHHHh
Confidence 999998764 4444322222 222111 3344555666677777777777776 789999999999999988765
No 103
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.35 E-value=6.8e-12 Score=149.33 Aligned_cols=115 Identities=27% Similarity=0.364 Sum_probs=106.0
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCC
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGG 941 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~ 941 (1006)
||||||++..+..+...|+..|+.|..+.++.+|+..+.. ..||+|++|+.||++||++++++||+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlVllD~~~p~~~g~~ll~~l~~~------------ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-GQPDLLITDVRMPGEDGLDLLPQIKKR------------ 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHHh------------
Confidence 6899999999999999999999999999999999998875 569999999999999999999999863
Q ss_pred CCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 942 ~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+|||++|+........+++++|+++|+.||++.++|...+.+++.
T Consensus 68 ----------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 68 ----------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred ----------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999999988764
No 104
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.35 E-value=2.1e-11 Score=130.98 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=106.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||+|||++..+..+...|...|+.+..+.++.+|+..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-TPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 389999999999999999999999999999999999998875 569999999999999999999999851
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||+++..........++++|+++|+.||++.++|...+..++..
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 258999999999888899999999999999999999999999887653
No 105
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.34 E-value=1.2e-11 Score=143.58 Aligned_cols=73 Identities=25% Similarity=0.412 Sum_probs=60.2
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCC--CCCCCCccccHHHHHHHHHHhCCE-EEEEeeCCCceEEEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSST--SRHYGGTGIGLSISKCLVELMRGQ-ISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--s~~~gGtGLGLsI~k~Lv~lmgG~-I~v~S~~g~GstF~f~lp 676 (1006)
.+.|+|+|+|+||+++.++++|++|++.+... ....||.|+||++|+.++++|+|. +.+.|..+ |+.|..++.
T Consensus 64 ~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~~~~~~ 139 (488)
T TIGR01052 64 HYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIYVYKMK 139 (488)
T ss_pred eEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceEEEEEE
Confidence 35699999999999999999999998776432 224579999999999999999998 99999886 776633333
No 106
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.34 E-value=5e-12 Score=108.93 Aligned_cols=66 Identities=41% Similarity=0.684 Sum_probs=62.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhc-CCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLD-TDLSSTQ-RDYAQTAQICGKALIALINEVLDRAKIEAR 446 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~-~~l~~~q-~~~l~~i~~s~~~L~~LIndlLd~skie~g 446 (1006)
+|++|++++||||||||++|.+++++|.+ ...++++ ++++..+..+.++|..+|+++++++|+|+|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999998 8888888 999999999999999999999999999987
No 107
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.32 E-value=3.2e-11 Score=127.48 Aligned_cols=116 Identities=34% Similarity=0.501 Sum_probs=105.9
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||++||++..+..+...|...|+.+.++.++.++++.+.. ..||+|++|+.||+++|+++++.||..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~vild~~~~~~~~~~~~~~i~~~----------- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-EMYALAVLDINMPGMDGLEVLQRLRKR----------- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 69999999999999999999999999999999999988765 569999999999999999999999863
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
..++|||++|.....+...+++++|+++|+.||++.++|...+..++.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 -----------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred -----------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 235899999999999999999999999999999999999999988765
No 108
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.30 E-value=1.7e-11 Score=146.10 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=87.4
Q ss_pred HhcCCEEEEEeCCCCCc-eEEecHHHHHHHHHHHHHHHhccCCCCe----EEEEEEEeeccccccccccccccCCCCCcc
Q 001846 473 RNKGIELAVFVSDKVPE-FVLGDPGRFRQIITNLVGNSVKFTERGH----IFVKVHLAERTMVKTDAKDETLLNGGTEEG 547 (1006)
Q Consensus 473 ~~k~i~l~~~~~~~~p~-~v~gD~~rl~QIl~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (1006)
.++.+.+..++..+.+. .+-.|...|.+++.|||+||++|+..+. |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~----------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE----------------------- 77 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-----------------------
Confidence 45778888777655432 1223577899999999999999997653 4444421
Q ss_pred cccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhcccc
Q 001846 548 VCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPF 627 (1006)
Q Consensus 548 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 627 (1006)
....+.|.|+|||+||++++++++|++|
T Consensus 78 ----------------------------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf 105 (795)
T PRK14868 78 ----------------------------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKL 105 (795)
T ss_pred ----------------------------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhh
Confidence 1124679999999999999999999999
Q ss_pred ccCCCC----CCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCC-ceE--EEEEEE
Q 001846 628 MQADSS----TSRHYGGTGIGLSISKCLVELMRGQISFVSRPQV-GST--FSFTAV 676 (1006)
Q Consensus 628 ~q~~~s----~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~-Gst--F~f~lp 676 (1006)
++.+.. .++...|.||||++|...+ .+||.|.+.|..+. +.. |.+.+-
T Consensus 106 ~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 106 LYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred cccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 865421 2233345555555555555 36888999999754 333 455443
No 109
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.28 E-value=4e-11 Score=124.12 Aligned_cols=118 Identities=31% Similarity=0.420 Sum_probs=106.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+|||+||++..+..+...|...|+.+..+.++.++++.+.. +.||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~ii~d~~~~~~~~~~~~~~l~~~---------- 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKAR---------- 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-CCCCEEEEeCCCCCCcHHHHHHHHHhc----------
Confidence 479999999999999999999999999999999999988875 569999999999999999999999862
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..++|||++|+....+....+++.|+++|+.||++.++|...+...+..
T Consensus 73 ------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 73 ------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 2368999999999999999999999999999999999999888876653
No 110
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.27 E-value=5.4e-11 Score=136.60 Aligned_cols=115 Identities=25% Similarity=0.356 Sum_probs=96.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||||||++.++..+..+|... |+.+. .+.++++|++.+.. ..||+|++|+.||+|||++++++||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-LNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-hCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 48999999999999999999876 88877 89999999998876 569999999999999999999999862
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCCCH---------HHHHHHHHHHh
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPFEE---------ENLYRELAKFF 998 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~---------~~L~~~l~~~l 998 (1006)
. .+|||++|+... .+...+++++|+++|+.||++. ++|...++...
T Consensus 75 --------------~-~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~ 131 (354)
T PRK00742 75 --------------R-PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAA 131 (354)
T ss_pred --------------C-CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHh
Confidence 1 289999998643 4566789999999999999953 45555555543
No 111
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.27 E-value=5.2e-11 Score=126.72 Aligned_cols=114 Identities=10% Similarity=0.113 Sum_probs=94.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHH-HHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT-RRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~-~~IR~~e~~~~~~~ 937 (1006)
.++++|||+|..+..++.+|+. ++. +..+.++.+|++.+. .||+||||+.||++||++++ +.||..
T Consensus 11 ~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~-------- 78 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRK-------- 78 (216)
T ss_pred ceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHh--------
Confidence 4799999999999999999984 454 557889999988643 38999999999999999997 567753
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHH--CCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK--CGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~--aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+++|||++|+.... ...++. +|+++|+.|+.+.++|.++|+..+...
T Consensus 79 --------------~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~ 128 (216)
T PRK10100 79 --------------NNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128 (216)
T ss_pred --------------CCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 236899999998663 334555 599999999999999999999877654
No 112
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.26 E-value=5.3e-11 Score=125.73 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=89.8
Q ss_pred HHHHHHHHhh---cCCeEEEeCCHHHHHHHhcCCCCCcEEE---EeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcC
Q 001846 872 RMVAAGALKK---FGATVECAASAKAALDKLQSPHCFDACF---MDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVD 945 (1006)
Q Consensus 872 ~~~l~~~L~~---~G~~v~~a~~g~eAl~~l~~~~~~DlIl---mDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~ 945 (1006)
|..+..+|+. .|+.|.++.+++++++.+.. ..||+++ +|+.||+|||++++++||+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-ISFSAVIFSLSAMRSERREGLSCLTELAIK---------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-CCCCEEEeeccccCCCCCCHHHHHHHHHHH----------------
Confidence 4567777864 57778899999999998875 4589998 78899999999999999863
Q ss_pred CCcccCCCCCcEEEEecCCCHHhHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 946 GTAKRDELHLPILAMTADVIHATFDECL-KCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 946 ~~~~~~~~~~PIIalTa~~~~~~~~~~~-~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+.+|||++|+.........++ ++|+++||.||++.++|.++|+..+...
T Consensus 66 ------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 66 ------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 2368999999987776565655 7999999999999999999999987654
No 113
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.26 E-value=6.9e-11 Score=139.56 Aligned_cols=118 Identities=29% Similarity=0.397 Sum_probs=107.4
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
+||+|||++..+..+...|...|+.+.++.++.+|+..+.. ..||+|++|+.||+++|+++++.||+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-EQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 79999999999999999999899999999999999999876 5699999999999999999999998631
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
....+|||++|+....+...+++++|+++|+.||++.++|...+.+...
T Consensus 73 ----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 73 ----------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred ----------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 1236899999999999999999999999999999999999998887654
No 114
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.25 E-value=3.3e-11 Score=133.73 Aligned_cols=103 Identities=30% Similarity=0.448 Sum_probs=90.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcC--CeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.|||||||.+..|++++.+|...| ..|.++.||.+|+++++. ..||+|.||+.||.|||++++++|-+.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-~~PDVi~ld~emp~mdgl~~l~~im~~-------- 72 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMDGLEALRKIMRL-------- 72 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-cCCCEEEEecccccccHHHHHHHHhcC--------
Confidence 389999999999999999999998 457799999999999987 679999999999999999999999752
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCCC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPFE 986 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~ 986 (1006)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 ---------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 ---------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ---------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3689999987544 455668999999999999974
No 115
>PRK13435 response regulator; Provisional
Probab=99.24 E-value=1.5e-10 Score=114.94 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=99.7
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCC-CCCHHHHHHHHHhhhchhhhh
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMP-EMDGFEATRRIRQMESKANEQ 936 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~e~~~~~~ 936 (1006)
..+|||+||++.....+...|+..|+.+. ++.++.++++.+.. ..||+|++|+.|+ .++|+++.+.+++.
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-RQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-cCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999976 78999999988765 4699999999998 59999999998751
Q ss_pred hccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 937 MMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.++|||+++.... ...++.+|+++|+.||++.++|.+.|.+++..+
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 2589999997643 356788999999999999999999999887643
No 116
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.23 E-value=3.7e-10 Score=106.63 Aligned_cols=120 Identities=37% Similarity=0.517 Sum_probs=105.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
.+||++||++.....+...|...|+. +.++.++.+++..+.. ..||++++|..+|.++|+++.+.+++..
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-cCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 58999999999999999999999984 7889999999988765 5699999999999999999999998632
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...++|+++++..........+++.|+++|+.||++.++|...+.++++.
T Consensus 77 ------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 77 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred ------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 12357999999988888888999999999999999999999999887753
No 117
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.23 E-value=5.9e-11 Score=141.77 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=64.5
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCC--CCCCCCccccHHHHHHHHHHh-CCEEEEEeeCCCceEEEEEEEccc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSST--SRHYGGTGIGLSISKCLVELM-RGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--s~~~gGtGLGLsI~k~Lv~lm-gG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+.|+|.|||+|||++.++++|++|+..+.-. ....|+.|+||+++..+++++ ||.+.+.|.++.|++|++.+|+..
T Consensus 72 ~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 72 HYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSV 151 (659)
T ss_pred EEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEe
Confidence 46799999999999999999999998644321 134578999999999999886 556999999999999999998854
No 118
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.22 E-value=1.3e-10 Score=106.25 Aligned_cols=71 Identities=51% Similarity=0.715 Sum_probs=59.6
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~l 675 (1006)
.+.|.|.|+|.|+++..+++.|.+|.. .......++.|+||++|+++++.|||++++.+..+.|++|++++
T Consensus 33 ~~~v~i~d~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 33 HLEIRVEDNGPGIPEEDLERIFERFSD--GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred EEEEEEEeCCCCCCHHHHHHHhhhhhc--CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 477999999999999999999998821 12223345899999999999999999999999988999998763
No 119
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.21 E-value=7e-11 Score=119.11 Aligned_cols=112 Identities=29% Similarity=0.391 Sum_probs=95.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
.++|++||++.++..+...|...||. |.++.++.++.+.... +.||+||||+.||.-|-.+..... +
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-~~pDvVildie~p~rd~~e~~~~~-~---------- 73 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-LQPDVVILDIEMPRRDIIEALLLA-S---------- 73 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh-cCCCEEEEecCCCCccHHHHHHHh-h----------
Confidence 48999999999999999999999997 5689999999988775 779999999999999933333222 1
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHH
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELA 995 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 995 (1006)
.....|||++|++.+++..+.+.++|+.+||.||+++..|+..|.
T Consensus 74 ------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 123579999999999999999999999999999999999876664
No 120
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.20 E-value=1.1e-10 Score=145.40 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=102.3
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+||||||++.++..+..+|...|+.|..+.++.+|+..+.. ..||+||+|+.||+|+|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-GEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-cCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 489999999999999999999999999999999999998875 569999999999999999999999862
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHH--HHHHHHHHHh
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE--NLYRELAKFF 998 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~--~L~~~l~~~l 998 (1006)
.+.+|||++|+..+.+...+++++|+++|+.||.+.. .+...+.+.+
T Consensus 77 ------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 77 ------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 2368999999999999999999999999999997643 5556555544
No 121
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.19 E-value=4.4e-10 Score=117.01 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=103.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||++||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||.++|+++++.+|+..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~~~~~~~~l~~~~------- 75 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-LEPDIVILDLGLPGMNGLDVIPQLHQRW------- 75 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHC-------
Confidence 57999999999999999999876 4664 478999999988765 5699999999999999999999998632
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|+|++|+.........++++|+++|+.||++.++|...+..++..
T Consensus 76 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 76 ---------------PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 257999999999999999999999999999999999999999887654
No 122
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.19 E-value=1.6e-10 Score=114.04 Aligned_cols=63 Identities=21% Similarity=0.406 Sum_probs=52.3
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTA 675 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~l 675 (1006)
.+.++|.|+|.||| ..+++|+||+..+. ..+|+|+||++++++ .+++.+.+.++.|++|+++.
T Consensus 74 ~~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~v~i~~ 136 (137)
T TIGR01925 74 EVYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTKIIMKK 136 (137)
T ss_pred EEEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeEEEEEe
Confidence 47899999999998 36789999996543 235899999998874 57999999999999999863
No 123
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.19 E-value=4.4e-10 Score=118.10 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=104.3
Q ss_pred ceEEEecCcHHHHHHHHHHHhhc-CCeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKF-GATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~-G~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||+++|+++++.++...
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~l~~~~~~~~~~~l~~~~------- 78 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKS------- 78 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHHhC-------
Confidence 48999999999999999999865 5654 468999999998875 4699999999999999999999998632
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+.|+|++++....+....++++|+++|+.||++.++|...+.+++..
T Consensus 79 ---------------~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 79 ---------------LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 257999999999999999999999999999999999999999988764
No 124
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.17 E-value=5e-10 Score=117.43 Aligned_cols=117 Identities=23% Similarity=0.284 Sum_probs=102.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhh-cCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKK-FGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~-~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+.. ..||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~~~~~~~~l~~~-------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-LDPDVILLDLNMKGMSGLDTLNALRRD-------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 4799999999999999999975 577765 68999999988765 569999999999999999999999863
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
..+.|++++|..........++++|+++|+.||++.++|...+.....
T Consensus 78 --------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 78 --------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred --------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 225789999998888888899999999999999999999999987654
No 125
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.12 E-value=8.1e-10 Score=117.03 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=96.6
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCC---eEEEeCCHHHHHHHhcCCCCCcEEEEeCC--CCCCCHHHHHHHHHhhhchhhh
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGA---TVECAASAKAALDKLQSPHCFDACFMDIQ--MPEMDGFEATRRIRQMESKANE 935 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~---~v~~a~~g~eAl~~l~~~~~~DlIlmDi~--MP~mdG~e~~~~IR~~e~~~~~ 935 (1006)
.||||||++..+..++.+|...++ .+..+.++.+++..+.. ..||+||||+. ||.+||.+++++|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~-~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------ 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS-LRPSVVFINEDCFIHDASNSQRIKQIINQ------ 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc-cCCCEEEEeCcccCCCCChHHHHHHHHHH------
Confidence 489999999999999999987653 45678999999998865 45999999966 8989999999999863
Q ss_pred hhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCE-EEeCCCCHHHHHHHHHHHhccC
Q 001846 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDG-YVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~-yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
.+.+|||++|+........ .+..|.+. |+.|+.++++|.++|+......
T Consensus 75 ----------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 75 ----------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred ----------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 2357999999987765543 55556665 8999999999999999987654
No 126
>PRK09191 two-component response regulator; Provisional
Probab=99.10 E-value=1.2e-09 Score=119.62 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=98.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCC-CCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPE-MDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+||++||++..+..+...|+..|+.+. .+.++.++++.+.. +.||+|++|+.||+ ++|+++++.+++.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-TRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-cCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 4799999999999999999999999987 78999999998876 56999999999995 8999999999852
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
. ++|||++|+...... .+...|+++|+.||++.++|...|.++...
T Consensus 209 --------------~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 209 --------------F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred --------------C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 1 689999999765443 344567899999999999999999987654
No 127
>PRK03660 anti-sigma F factor; Provisional
Probab=99.10 E-value=8.5e-10 Score=110.07 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=55.4
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+.++|.|+|.||++ ..++|+||++.+.. .+++|+||+|+++ +.+++.+++.++.|++|+++.++.+
T Consensus 74 ~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 74 ELEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKK 140 (146)
T ss_pred EEEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEecc
Confidence 478999999999986 66899999864432 2478999999875 4568999999999999999998765
No 128
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.07 E-value=2.9e-08 Score=103.91 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=129.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHH-HHHHHHHHhhccccCCCCCC
Q 001846 34 RAWLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNH-VHALTILVSTFHYFKNPSAL 112 (1006)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~v 112 (1006)
..|+|.++.+-|+....+.+|... ..+.+ |-+.....++.-.++.|++.++|. ++.+-.|.+ +.+..++.
T Consensus 16 s~~LPali~~~i~vv~sv~~~~~~--~~~~q----e~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~---~~e~~P~~ 86 (297)
T COG3452 16 SNYLPALIGAVILVVVSVHAWLQL--RRVSQ----ERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGK---HWETEPDM 86 (297)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---heecCCCc
Confidence 357777775554434444444332 22222 223333456677777777776665 566655555 45667789
Q ss_pred CHHHHHHHHHHhhhhCCCceeeeeccccChhhHHHHHHHhCcccccccCCCCCCCCcceeeEeeecCCCcccccccCCch
Q 001846 113 DQDTFAEYTTRTAFERPLLSGVAYAPRVVDAQREQFERQHGMTITTMKSEPSPIRDEYAPVMFYQEPMSHVKSLDMMSGE 192 (1006)
Q Consensus 113 ~~~~f~~~~~~~~~~~p~i~~~~~~~~v~~~~r~~fe~~~~~~i~~~~~~p~~~~~~y~pv~~~~~~~~~~~~~D~~s~~ 192 (1006)
.|+.|+.-+......+.+.+.++=+|.. .+ --.|..+..+.++|+||..+|
T Consensus 87 ~Q~qw~~lA~a~~e~~~~lr~I~vaP~~--------------VV---------------~~~yPl~~neaa~gLDYrk~p 137 (297)
T COG3452 87 PQQQWELLARAVFEDYDGLRNIAVAPSL--------------VV---------------ARVYPLPGNEAAIGLDYRKNP 137 (297)
T ss_pred hHHHhHHHHHHHhhccccceeeccCccc--------------EE---------------EEEeecCCChhhcCcchhcCH
Confidence 9999999888777777888877733321 11 112344555667899999999
Q ss_pred hhHHHHHHHHhcCCceeeeceeecCCcccceEEEeecccCCCCCCCCHHHHHHhhccceecccchhHHHHHHH
Q 001846 193 EDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLL 265 (1006)
Q Consensus 193 ~~r~~i~~Ar~tg~~~lt~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll 265 (1006)
.-|.++.+||+.++.++|+|+.|+|+++ |++.++|++-.. |.+ ..++|+|.++||++.|.+...
T Consensus 138 qQ~~s~~~A~~~k~tvvsGpVDL~QGgR-gfi~rvPlf~gp-~~~-------dRFwGvVs~V~dvDqL~~s~~ 201 (297)
T COG3452 138 QQRQSTSRARRQKETVVSGPVDLVQGGR-GFIGRVPLFMGP-PGG-------DRFWGVVSGVFDVDQLYESVS 201 (297)
T ss_pred HHHHHHHHHHhhcceEEecceeeccCCc-eEEEEEeeeeCC-CCC-------CccceEEEEEEEHHHHHHHhc
Confidence 9999999999999999999999999876 999999999753 221 346899999999999988873
No 129
>PRK10693 response regulator of RpoS; Provisional
Probab=99.05 E-value=9.9e-10 Score=123.32 Aligned_cols=89 Identities=25% Similarity=0.348 Sum_probs=79.4
Q ss_pred EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHH
Q 001846 888 CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967 (1006)
Q Consensus 888 ~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~ 967 (1006)
.+.++.+|++.+.. ..||+|++|+.||+|||++++++||+. ...+|||++|+....+
T Consensus 2 ~a~~g~~al~~l~~-~~pDlVL~D~~mp~~~Gle~~~~ir~~----------------------~~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLGG-FTPDLIICDLAMPRMNGIEFVEHLRNR----------------------GDQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhc----------------------CCCCcEEEEECCCCHH
Confidence 57899999999876 569999999999999999999999863 2358999999999999
Q ss_pred hHHHHHHCCCCEEEeCCC-CHHHHHHHHHHHhc
Q 001846 968 TFDECLKCGMDGYVSKPF-EEENLYRELAKFFK 999 (1006)
Q Consensus 968 ~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~l~ 999 (1006)
...+++++|++||+.||+ +.++|.+.+.+.+.
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 999999999999999999 58999988887664
No 130
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.00 E-value=5e-09 Score=94.64 Aligned_cols=112 Identities=37% Similarity=0.501 Sum_probs=99.9
Q ss_pred EEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCC
Q 001846 863 LVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942 (1006)
Q Consensus 863 LvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~ 942 (1006)
|++|+++..+..+...|...|+.+.++.++.+++..+.. +.||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~~------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-EKPDLILLDIMMPGMDGLELLRRIRKR------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-CCCCEEEEecCCCCCchHHHHHHHHHh-------------
Confidence 578999999999999999999999999999999998875 569999999999999999999999863
Q ss_pred CcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 943 ~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
...+|+++++..........++..|+++|+.||++.++|.+.+.++
T Consensus 67 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2257999999887788888999999999999999999999988764
No 131
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.96 E-value=1.9e-08 Score=123.13 Aligned_cols=76 Identities=28% Similarity=0.478 Sum_probs=63.5
Q ss_pred eEEEEEEEecCCCCChhH------------------------Hhhhccccc-cCCCCCCCCCCCccccHHHHHHHHHHhC
Q 001846 602 VTLMVCVEDTGIGIPLSA------------------------QERVFMPFM-QADSSTSRHYGGTGIGLSISKCLVELMR 656 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~------------------------~~~iF~pF~-q~~~s~s~~~gGtGLGLsI~k~Lv~lmg 656 (1006)
..+.|+|+|.|.||+.+. ..-||.|-| .++.- ..-.|-|.||=+||+-|+.+|
T Consensus 475 n~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~V--tdvSGRGVGMDVVk~~I~~Lg 552 (716)
T COG0643 475 NNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQV--TDVSGRGVGMDVVKTNIEQLG 552 (716)
T ss_pred CeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhh--hcccCCccCHHHHHHHHHHcC
Confidence 468899999999999654 456899955 33322 245699999999999999999
Q ss_pred CEEEEEeeCCCceEEEEEEEccc
Q 001846 657 GQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 657 G~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|+|.++|++|+||+|++.||++.
T Consensus 553 G~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 553 GSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred CEEEEEecCCCCeEEEEecCcHH
Confidence 99999999999999999999864
No 132
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.96 E-value=3.7e-07 Score=105.43 Aligned_cols=124 Identities=19% Similarity=0.343 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETL 539 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 539 (1006)
+.+.+..........-++..........+..-..-..-+-+|+.-.++||+||+..-++.|++...
T Consensus 242 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~-------------- 307 (365)
T COG4585 242 LVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERT-------------- 307 (365)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEc--------------
Confidence 344444444444455566665554421111112346789999999999999999988888877532
Q ss_pred cCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhH
Q 001846 540 LNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSA 619 (1006)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~ 619 (1006)
+..+.++|.|+|+|.+++.
T Consensus 308 -------------------------------------------------------------~~~l~l~V~DnG~Gf~~~~ 326 (365)
T COG4585 308 -------------------------------------------------------------DDELRLEVIDNGVGFDPDK 326 (365)
T ss_pred -------------------------------------------------------------CCEEEEEEEECCcCCCccc
Confidence 1248899999999998543
Q ss_pred HhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 620 QERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 620 ~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
. +.|+||.=-|+=|+.+||++.+.|.+|+||++++++|+
T Consensus 327 ~-------------------~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 327 E-------------------GGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred c-------------------CCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 1 26799999999999999999999999999999999984
No 133
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.95 E-value=2.6e-07 Score=98.61 Aligned_cols=194 Identities=22% Similarity=0.297 Sum_probs=131.3
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAI 460 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~l 460 (1006)
.|..++.-+.|-++|=|+.|..++.+-.....++ ..+++...+.-... +.++-+.|..+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~s-la~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQS-LALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH-HHHHHHHHhcC---------CcceEcHHHH
Confidence 4567888899999999999999988776544443 22333322222222 23344444332 1345678888
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHhccC----CCCeEEEEEEEeeccccccccc
Q 001846 461 LDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGD-PGRFRQIITNLVGNSVKFT----ERGHIFVKVHLAERTMVKTDAK 535 (1006)
Q Consensus 461 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD-~~rl~QIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~ 535 (1006)
++.+...+.+....+.+.+.....+.+ .+--| ..-|--|+.-|++||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 888887777655556677776655432 12222 3458889999999999996 35777776654211
Q ss_pred cccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCC
Q 001846 536 DETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGI 615 (1006)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 615 (1006)
.....+.|+|+|.|+
T Consensus 157 -----------------------------------------------------------------~~~~~l~v~deg~G~ 171 (221)
T COG3920 157 -----------------------------------------------------------------GGRFLLTVWDEGGGP 171 (221)
T ss_pred -----------------------------------------------------------------CCeEEEEEEECCCCC
Confidence 003568899999999
Q ss_pred ChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHH-HHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 616 PLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLV-ELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 616 ~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv-~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
|.+. ++ ...|+|+.+++.+| ++.||.+...+.. |++|++++|...
T Consensus 172 ~~~~------~~-----------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 172 PVEA------PL-----------SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred CCCC------CC-----------CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 8642 00 24689999999999 8999999988754 999999998754
No 134
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-06 Score=95.67 Aligned_cols=188 Identities=16% Similarity=0.226 Sum_probs=131.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHH
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAIL 461 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll 461 (1006)
+.+...-+=.||-.-+++|.--..+++.-..++..+...+.|+.-+-++-.-+..+|..-|- -......+.+.+
T Consensus 303 Rk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~qai 376 (497)
T COG3851 303 RKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQAI 376 (497)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCC------cccccccHHHHH
Confidence 34444455567788889998877777665555555556666666555555555555543321 112345677888
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHHhccCCCCeEEEEEEEeecccccccccccc
Q 001846 462 DDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP---GRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDET 538 (1006)
Q Consensus 462 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~---~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~ 538 (1006)
..++..+. ..++||...++...+. ..-|+ .-+.++...+++|-+|+.+...|.+..+..
T Consensus 377 ~~l~~Em~--~~ergihcq~~~~~n~---~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~------------- 438 (497)
T COG3851 377 RSLLREME--LEERGIHCQLDWRINE---TALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQ------------- 438 (497)
T ss_pred HHHHHHhh--hhhcCeEEEeccccCc---ccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeC-------------
Confidence 88888765 4577887766543211 11122 347889999999999999998888877642
Q ss_pred ccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChh
Q 001846 539 LLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLS 618 (1006)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e 618 (1006)
+..+.++|+|+|+|+|+.
T Consensus 439 --------------------------------------------------------------~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 439 --------------------------------------------------------------DERLMLEIEDDGSGLPPG 456 (497)
T ss_pred --------------------------------------------------------------CcEEEEEEecCCcCCCCC
Confidence 224789999999999853
Q ss_pred HHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 619 AQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 619 ~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
. +-+|.||.=.++=|..+||+++++| ..||...+++|
T Consensus 457 ~-------------------~v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 457 S-------------------GVQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred C-------------------CccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 1 3578999999999999999999999 67999999987
No 135
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.87 E-value=8.9e-07 Score=101.57 Aligned_cols=184 Identities=23% Similarity=0.317 Sum_probs=126.8
Q ss_pred HHhHhhhhhhHHHHHHHHHH----Hh---cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHH
Q 001846 387 ATVSHEIRTPMNGILGMLAL----LL---DTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRA 459 (1006)
Q Consensus 387 a~vSHELRTPLn~I~g~~el----L~---~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ 459 (1006)
++|+.||---|.=.+.++.+ |. ..+..++.++.+..++...+.--.-+.++|.--|+ ....-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 45666776666666655543 32 22333444555555555555444555666654443 233447888
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHHhccCCCCeEEEEEEEeecccccccccc
Q 001846 460 ILDDVLSLFSEKSRNKGIELAVFVSDKVPEFVLGDP---GRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKD 536 (1006)
Q Consensus 460 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~---~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 536 (1006)
-++++++.|+. +-|+.+.++.. .|... -|+ ..+-||+.-=++||+||+..-+|.|+++...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~---------- 510 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND---------- 510 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC----------
Confidence 88888887764 45677666543 33221 233 4577999999999999999888888876321
Q ss_pred ccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCC
Q 001846 537 ETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIP 616 (1006)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~ 616 (1006)
..+.+.|+|+|+|||
T Consensus 511 -----------------------------------------------------------------g~~~~~VeDnG~Gi~ 525 (574)
T COG3850 511 -----------------------------------------------------------------GQVTLTVEDNGVGID 525 (574)
T ss_pred -----------------------------------------------------------------CeEEEEEeeCCcCCC
Confidence 246799999999999
Q ss_pred hhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 617 LSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 617 ~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
+.. +.+| --||.|.+.=++.+||.+.|++.+|+||++.+++|
T Consensus 526 ~~~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 526 EAA-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred Ccc-----------------CCCC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 641 1124 57999999999999999999999999999999986
No 136
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.79 E-value=5.9e-08 Score=98.67 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=54.9
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
.+.|.|+|+|+||+++.....|.||+...+... ..+.|+||.++++|++. +.+.+ ..|++|+++-.+..
T Consensus 77 ~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~--~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~~~ 145 (161)
T PRK04069 77 RLEIVVADNGVSFDYETLKSKLGPYDISKPIED--LREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYINR 145 (161)
T ss_pred EEEEEEEECCcCCChHHhccccCCCCCCCcccc--cCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEcCc
Confidence 588999999999999999999999886554332 23679999999999986 66665 46899998876644
No 137
>PRK15029 arginine decarboxylase; Provisional
Probab=98.78 E-value=3.4e-08 Score=121.32 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=85.1
Q ss_pred eEEEecCcHH--------HHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHH----HHHHHHHh
Q 001846 861 KILVVDDNGV--------NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGF----EATRRIRQ 928 (1006)
Q Consensus 861 ~ILvVDDn~~--------n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~----e~~~~IR~ 928 (1006)
+||||||+.. .++.+...|+..||+|..+.|+++|++.+.....||+||+|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 68999999999999999999999999999653469999999999999998 89999996
Q ss_pred hhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC--HHhHHHHHHCCCCEEEeCCCCHHH
Q 001846 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI--HATFDECLKCGMDGYVSKPFEEEN 989 (1006)
Q Consensus 929 ~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~~~ 989 (1006)
. ...+|||++|+... ...-.+.++ -+++|+-+--+..+
T Consensus 82 ~----------------------~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTAD 121 (755)
T ss_pred h----------------------CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHH
Confidence 2 23699999999886 333333332 35777777655444
No 138
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.70 E-value=5.8e-08 Score=105.37 Aligned_cols=113 Identities=30% Similarity=0.394 Sum_probs=94.2
Q ss_pred eEEEecCcHHHHHHHHHHHhhc-CCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKF-GAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~-G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+|+++||++..+..+..++... +++ +..+.++.++++.++.. .+|++|+|++||+|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL-RPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc-CCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 6999999999999999999832 222 33689999999999874 799999999999999999999999742
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
+..+|+++|++... ...+++..+-|||.||++.+.|...+.+..
T Consensus 74 --------------~~~~Ivfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~ 117 (244)
T COG3279 74 --------------PRPAIVFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLR 117 (244)
T ss_pred --------------CCCeEEEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHH
Confidence 24689999997544 445667788999999999999999998643
No 139
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.67 E-value=1.2e-05 Score=95.76 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=55.1
Q ss_pred eEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCC-ccccHHHHHHHHHHhCCE--EEEEeeCCCceEEEEEEEcc
Q 001846 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGG-TGIGLSISKCLVELMRGQ--ISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gG-tGLGLsI~k~Lv~lmgG~--I~v~S~~g~GstF~f~lp~~ 678 (1006)
..+.++|.|||+||+++....+.+.- ++ .|+||+=+++.++++-|. +.++|++++|++.++.+|..
T Consensus 385 ~~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 385 DVIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred CEEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 36889999999999998877664431 12 599999999999999988 58999999999999998854
No 140
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.56 E-value=1.5e-05 Score=90.24 Aligned_cols=131 Identities=24% Similarity=0.349 Sum_probs=93.1
Q ss_pred eEeecHHHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccC-----CCCeEEEEEEE
Q 001846 452 AVLFNLRAILDDVLSLFSEKSRNK--GIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT-----ERGHIFVKVHL 524 (1006)
Q Consensus 452 ~~~~dL~~ll~~v~~~~~~~a~~k--~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT-----~~G~I~v~v~~ 524 (1006)
...++|.+-++.+-..++-+-..- .+++.+++++.+-. + .=|. -++.=|+.|||||. +.|.|.|+|..
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~-~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-V-QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEK 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-c-cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEE
Confidence 345788999988877765432222 24444444433211 0 1122 25667899999996 34788888754
Q ss_pred eeccccccccccccccCCCCCcccccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEE
Q 001846 525 AERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTL 604 (1006)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 604 (1006)
.+ ..+
T Consensus 489 ~d---------------------------------------------------------------------------~~l 493 (557)
T COG3275 489 ED---------------------------------------------------------------------------ADL 493 (557)
T ss_pred eC---------------------------------------------------------------------------CeE
Confidence 22 247
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCC---EEEEEeeCCCceEEEEEEEcccc
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRG---QISFVSRPQVGSTFSFTAVFGKC 680 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG---~I~v~S~~g~GstF~f~lp~~~~ 680 (1006)
++.|+|||-||+++ ...|+|+||+.+++=++++=| -+.+.|.+..||+++|.+|+...
T Consensus 494 ~i~VeDng~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~ 554 (557)
T COG3275 494 RIEVEDNGGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRT 554 (557)
T ss_pred EEEEecCCCCcCCC------------------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCccc
Confidence 89999999999886 124899999999999888888 78999999999999999998653
No 141
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.55 E-value=6.6e-07 Score=90.74 Aligned_cols=68 Identities=18% Similarity=0.351 Sum_probs=52.5
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEcc
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFG 678 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~ 678 (1006)
.+.+.|+|+|.|++++.....|.|+...++.. ...+.|+||.|+++|++ ++.+.+ +.|++++++..+.
T Consensus 77 ~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~~ 144 (159)
T TIGR01924 77 RLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYLN 144 (159)
T ss_pred EEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEEc
Confidence 47899999999999999888898876544332 23466999999999998 677776 4578888775544
No 142
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.53 E-value=3.3e-07 Score=76.91 Aligned_cols=64 Identities=50% Similarity=0.767 Sum_probs=57.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001846 382 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEA 445 (1006)
Q Consensus 382 Ks~Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~ 445 (1006)
+.+|++.++|||||||++|.++++.+.+...++....+++.+..+.+.+..++++++++++.++
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999999999999999887666666688999999999999999999999999775
No 143
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.40 E-value=0.00012 Score=79.16 Aligned_cols=184 Identities=17% Similarity=0.223 Sum_probs=120.7
Q ss_pred hhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeE---eecHHHHHHHHHHHHH
Q 001846 393 IRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAV---LFNLRAILDDVLSLFS 469 (1006)
Q Consensus 393 LRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~---~~dL~~ll~~v~~~~~ 469 (1006)
|..-|-++.-.++++...-.++.+ -....+..+..+|..-|+++-.+|. . |.+. ..-|..-++-+++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH----~--LRP~~LDDLGL~aALe~L~~~f~ 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH----D--LRPRALDDLGLTAALEALLEDFK 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc----c--cChhhhhhhhHHHHHHHHHHHhh
Confidence 444556666677776543222222 2225567777888888888866653 1 2221 1223444555555554
Q ss_pred HHHHhcCCEEEEEeCCCCCceEE-ecHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeeccccccccccccccCCCCCccc
Q 001846 470 EKSRNKGIELAVFVSDKVPEFVL-GDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAERTMVKTDAKDETLLNGGTEEGV 548 (1006)
Q Consensus 470 ~~a~~k~i~l~~~~~~~~p~~v~-gD~~rl~QIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (1006)
++.|+++.+..+. .|..+. --...|.+|...-++|-=|++..-.|.|....
T Consensus 335 ---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~------------------------ 386 (459)
T COG4564 335 ---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQ------------------------ 386 (459)
T ss_pred ---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEecc------------------------
Confidence 6789998887643 233222 22457889999999998888855445444321
Q ss_pred ccCCCCccccccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccc
Q 001846 549 CRSGTGQFNTLSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFM 628 (1006)
Q Consensus 549 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 628 (1006)
....+.+.|.|+|+|++.+...
T Consensus 387 ---------------------------------------------------~~d~vql~vrDnG~GF~~~~~~------- 408 (459)
T COG4564 387 ---------------------------------------------------MGDMVQLMVRDNGVGFSVKEAL------- 408 (459)
T ss_pred ---------------------------------------------------CCcceEEEEecCCCCccchhhc-------
Confidence 1235789999999999865321
Q ss_pred cCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEccc
Q 001846 629 QADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVFGK 679 (1006)
Q Consensus 629 q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~~~ 679 (1006)
..-.||||-=.++=+...||++.++|.|. ||..++.+|...
T Consensus 409 ---------~~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~ 449 (459)
T COG4564 409 ---------QKRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDA 449 (459)
T ss_pred ---------cCccccccccHHHHHHHhCceEEEEecCC-CcEEEEEecchh
Confidence 11269999999999999999999999987 999999998753
No 144
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.34 E-value=2.5e-05 Score=86.18 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------ceeEeecHHHHHHHHHHHHHHHHHhcCC---EEEEEeCCCC
Q 001846 417 RDYAQTAQICGKALIALINEVLDRAKIEARKLE------LEAVLFNLRAILDDVLSLFSEKSRNKGI---ELAVFVSDKV 487 (1006)
Q Consensus 417 ~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~------l~~~~~dL~~ll~~v~~~~~~~a~~k~i---~l~~~~~~~~ 487 (1006)
+.+++....+--.+.-|+|+=+-+-- +|+-+ .-...+++.+++.++.+..+..+..+=+ ++.+.-+...
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 44556555554444456666443332 34332 1123578999999998877766665432 3333322222
Q ss_pred CceEEecHHHHHHHHHHHHHHHhccCC-----CCe----EEEEEEEeeccccccccccccccCCCCCcccccCCCCcccc
Q 001846 488 PEFVLGDPGRFRQIITNLVGNSVKFTE-----RGH----IFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNT 558 (1006)
Q Consensus 488 p~~v~gD~~rl~QIl~NLl~NAiKfT~-----~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1006)
... ..=|..|..++.-|+.||+++|- +|. |.|.|-.
T Consensus 252 ~~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~---------------------------------- 296 (414)
T KOG0787|consen 252 SFT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK---------------------------------- 296 (414)
T ss_pred cCc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec----------------------------------
Confidence 211 13488999999999999999982 232 4443321
Q ss_pred ccccccccCCCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCC----
Q 001846 559 LSGLEAADGRNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSST---- 634 (1006)
Q Consensus 559 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~---- 634 (1006)
++..+.|.|+|-|=||+.+..+++|.--|...+..
T Consensus 297 -----------------------------------------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~ 335 (414)
T KOG0787|consen 297 -----------------------------------------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDN 335 (414)
T ss_pred -----------------------------------------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCC
Confidence 11236688999999999999999998655332211
Q ss_pred --CCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEE
Q 001846 635 --SRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAV 676 (1006)
Q Consensus 635 --s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp 676 (1006)
...-.|.|-||.|||-..+..||.+.+.|-.|-||-..+.+-
T Consensus 336 ~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk 379 (414)
T KOG0787|consen 336 NRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLK 379 (414)
T ss_pred CCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEec
Confidence 223359999999999999999999999999999999998874
No 145
>PF14501 HATPase_c_5: GHKL domain
Probab=98.32 E-value=7.6e-06 Score=76.24 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=43.7
Q ss_pred eEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEEEEc
Q 001846 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFTAVF 677 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~lp~ 677 (1006)
..+.|.|+++-.+ +. ++++ +++...++.|+||.+++++++.++|.+.++++.+ .|++++.+
T Consensus 39 ~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f~~~i~i 99 (100)
T PF14501_consen 39 GFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IFTVKIVI 99 (100)
T ss_pred CEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EEEEEEEE
Confidence 3577888888544 11 2222 2233456899999999999999999999987754 77777654
No 146
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.28 E-value=7.1e-06 Score=106.20 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=99.4
Q ss_pred ccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhh
Q 001846 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANE 935 (1006)
Q Consensus 856 ~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~ 935 (1006)
.+.+++||++||++.++..+..+|...|+.+..+.++.+ +.. ..||++++|+.||.+++.+.+........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~-~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE-AHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc-CCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 456789999999999999999999999999999999998 233 46999999999999888776655554211
Q ss_pred hhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 936 QMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
....|+|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 12356888999999999999999999999999999999999987654
No 147
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.13 E-value=2.5e-06 Score=98.19 Aligned_cols=92 Identities=29% Similarity=0.406 Sum_probs=81.1
Q ss_pred CeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecC
Q 001846 884 ATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963 (1006)
Q Consensus 884 ~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~ 963 (1006)
++|..+..|.+|+..+.. +.+|.+++|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~~-~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILLD-HKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHhc-CCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 466679999999999876 7799999999999999999999998732 238999999
Q ss_pred CCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 964 VIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 964 ~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
...+...+.+++|++++++||++...+......+...
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccc
Confidence 9999999999999999999999999999887776543
No 148
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.07 E-value=1.5e-05 Score=66.17 Aligned_cols=62 Identities=44% Similarity=0.674 Sum_probs=53.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 381 AKSQFLATVSHEIRTPMNGILGMLALLLDTDL-SSTQRDYAQTAQICGKALIALINEVLDRAK 442 (1006)
Q Consensus 381 aKs~Fla~vSHELRTPLn~I~g~~elL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~sk 442 (1006)
.+.++++.++|||||||++|.++++.+.+... .+....++..+..+.+++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999999999876432 456678889999999999999999998874
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=5.2e-05 Score=85.64 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=46.6
Q ss_pred EEEEEEecCCCCChhHHhhhccccccCCCCC------CCCCCCccccHHHHHHHHHHhCCEEEEEeeC--CCceEEEEE
Q 001846 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSST------SRHYGGTGIGLSISKCLVELMRGQISFVSRP--QVGSTFSFT 674 (1006)
Q Consensus 604 l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~------s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~--g~GstF~f~ 674 (1006)
..|+|.|+|.||++++++++|++|+..+... ...+|--|.||+-...+ +++.+.|.. +.+..+.+.
T Consensus 52 ~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 52 KLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred EEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 3589999999999999999999999765432 12345567888644333 378999985 444444443
No 150
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.00028 Score=79.74 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=75.1
Q ss_pred eEEEEEEEecCCCCChhHHhhhccccccCCCC-C-CCCCCCccccHHHHHHHHHHhCCE-EEEEeeCCC-ceEEEEEEEc
Q 001846 602 VTLMVCVEDTGIGIPLSAQERVFMPFMQADSS-T-SRHYGGTGIGLSISKCLVELMRGQ-ISFVSRPQV-GSTFSFTAVF 677 (1006)
Q Consensus 602 ~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s-~-s~~~gGtGLGLsI~k~Lv~lmgG~-I~v~S~~g~-GstF~f~lp~ 677 (1006)
.+..+.|+|||+|||+++..++|-.+.-.+.- . ...-|--|||.+-|--..++.-|+ +.|.|..+. ++...+.+-.
T Consensus 71 d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~i 150 (538)
T COG1389 71 DHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKI 150 (538)
T ss_pred ceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEe
Confidence 35779999999999999999999886543322 1 112245789999999999999886 777776654 6766666654
Q ss_pred cccccchhhhccccCCCCCCCCCCCCeEEE-EcCchhHH--HHHHHHHHHc
Q 001846 678 GKCKEYVFEDIKQSKSEDLPPGFKGLKAVV-VDEKPVRA--AVTQYHLNRL 725 (1006)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~g~r~lv-vd~~~~~~--~~~~~~l~~~ 725 (1006)
....... .+.......-+...+|.++-+ ++++..++ .-...+|++.
T Consensus 151 d~~kNEp--~Iv~r~~~~~~~~~hGT~Vel~~~~~~~~~~~qgi~eYlkrt 199 (538)
T COG1389 151 DVQKNEP--EIVERGEVENPGGWHGTRVELELKGVWYRAKRQGIYEYLKRT 199 (538)
T ss_pred cCCCCcc--hhhhcccccCCCCCCceEEEEEecccchhhcccCHHHHHHHH
Confidence 4322211 111112223344568888755 45543332 2134455543
No 151
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.59 E-value=0.0005 Score=66.50 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=42.1
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCCCceEEEEE
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQVGSTFSFT 674 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g~GstF~f~ 674 (1006)
.+.|+|.|+|.|+++.....--..=. ......|+||.|++++++.+ .+ + .+.|++++++
T Consensus 66 ~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 66 RLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred EEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 58899999999998875443221100 12346799999999999875 45 3 7789998874
No 152
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.91 E-value=0.0046 Score=47.20 Aligned_cols=54 Identities=35% Similarity=0.485 Sum_probs=48.4
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMP 915 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP 915 (1006)
++++++|++..+..+...+...|+.+..+.++.++...+.. +.||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-EKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-cCCCEEEEeccCC
Confidence 68999999999999999999999999999999999988765 4699999998765
No 153
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=96.83 E-value=0.016 Score=54.13 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=80.9
Q ss_pred EEEEcCchhHHHHHHHHHHHcCC-EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGI-MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~-~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
++++|+++..+...+..++..|+ .+..+++..++...+.. ..||++++|..... .....+...+ +..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--------~~~d~iiid~~~~~-~~~~~~~~~i---~~~ 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--------HPPDLIIIDLELPD-GDGLELLEQI---RQI 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--------STESEEEEESSSSS-SBHHHHHHHH---HHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--------cCceEEEEEeeecc-cccccccccc---ccc
Confidence 58999999999999999999999 99999999999988765 46999999976543 1122222222 222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHH
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l 830 (1006)
. ..+++++++..............|. +.++.||+....+.+.+
T Consensus 69 ~---~~~~ii~~t~~~~~~~~~~~~~~g~-~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 69 N---PSIPIIVVTDEDDSDEVQEALRAGA-DDYLSKPFSPEELRAAI 111 (112)
T ss_dssp T---TTSEEEEEESSTSHHHHHHHHHTTE-SEEEESSSSHHHHHHHH
T ss_pred c---ccccEEEecCCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHhh
Confidence 2 3456666666666666666666654 57999999999887765
No 154
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.64 E-value=0.015 Score=58.14 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=63.5
Q ss_pred ecHHHHHHHHHHHHHHHhccCCC-----CeEEEEEEEeeccccccccccccccCCCCCcccccCCCCccccccccccccC
Q 001846 493 GDPGRFRQIITNLVGNSVKFTER-----GHIFVKVHLAERTMVKTDAKDETLLNGGTEEGVCRSGTGQFNTLSGLEAADG 567 (1006)
Q Consensus 493 gD~~rl~QIl~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 567 (1006)
-|-.+++-++.-++.||++|..+ |.|.|.++..+
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~----------------------------------------- 74 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD----------------------------------------- 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC-----------------------------------------
Confidence 36789999999999999999866 77877775422
Q ss_pred CCcccccccccccccccchhhHhhhhccCCCCCceEEEEEEEecCCCCChhHHhhhccccccCCCCCCCCCCCccccHHH
Q 001846 568 RNSWDKFKHLIDAEGFQSNASIINMMASNGGSEDVTLMVCVEDTGIGIPLSAQERVFMPFMQADSSTSRHYGGTGIGLSI 647 (1006)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s~~~gGtGLGLsI 647 (1006)
..+.+.|.|.|+||. ..++.+.|-+.. ...-..-|+||.+
T Consensus 75 ----------------------------------~~~~i~i~D~G~~~~--~~~~~~~~~~~~----~~~~~~~G~Gl~l 114 (146)
T COG2172 75 ----------------------------------GKLEIRIWDQGPGIE--DLEESLGPGDTT----AEGLQEGGLGLFL 114 (146)
T ss_pred ----------------------------------CeEEEEEEeCCCCCC--CHHHhcCCCCCC----CcccccccccHHH
Confidence 247899999998875 445566665211 1111133899999
Q ss_pred HHHHHHHhCCEEEEEeeCCC
Q 001846 648 SKCLVELMRGQISFVSRPQV 667 (1006)
Q Consensus 648 ~k~Lv~lmgG~I~v~S~~g~ 667 (1006)
.++++ .++.+.+.++.
T Consensus 115 ~~~~~----D~~~~~~~~~~ 130 (146)
T COG2172 115 AKRLM----DEFSYERSEDG 130 (146)
T ss_pred Hhhhh----eeEEEEeccCC
Confidence 99977 46788855555
No 155
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.62 E-value=0.0091 Score=73.63 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=38.9
Q ss_pred EEEEEEecCCCCChhHHhhhccccccCCCCCC------CCCCCccccHHHHHHHHHHhCCEEEEEeeC
Q 001846 604 LMVCVEDTGIGIPLSAQERVFMPFMQADSSTS------RHYGGTGIGLSISKCLVELMRGQISFVSRP 665 (1006)
Q Consensus 604 l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~s------~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~ 665 (1006)
..|+|.|+|.||++++++.+|.++....-.+. ..+|=-|.||+-...+ +++.+.|..
T Consensus 52 ~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 52 KLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 45999999999999999999999875543221 1234356666544443 367777765
No 156
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.56 E-value=0.036 Score=59.79 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=81.9
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
+++++||+++........+|+..|+.|..+.+..++...... . ||++++|-.++ +.++- .....++.
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--------~-~dlviLD~~lP--~~dG~--~~~~~iR~ 67 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--------Q-PDLVLLDLMLP--DLDGL--ELCRRLRA 67 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------C-CCEEEEECCCC--CCCHH--HHHHHHHh
Confidence 478999999999999999999999999999999998877543 4 99999987654 22221 12223332
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~ 837 (1006)
. .. ..+++++++...+..+.-..-..| +|.++.||+....|.+.++..+...
T Consensus 68 ~-~~-~~~PIi~Lta~~~~~d~v~gl~~G-ADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 68 K-KG-SGPPIIVLTARDDEEDRVLGLEAG-ADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred h-cC-CCCcEEEEECCCcHHHHHHHHhCc-CCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 2 11 234444444433333333333333 4889999999999999998887543
No 157
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.48 E-value=0.022 Score=54.01 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=73.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEE-EEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC-FMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlI-lmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
||||||||..-+.-+..+|+=.|.++..+.+.+-. ..... ..++.+ ++...++ ...+.++.+-+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~~-~~~~~~~v~~g~~~--~~~~~l~~l~~----------- 65 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADWS-SPWEACAVILGSCS--KLAELLKELLK----------- 65 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-Hhhhh-cCCcEEEEEecCch--hHHHHHHHHHh-----------
Confidence 69999999999999999999999999988876542 22222 234544 4444444 33444555543
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
..+++|++.+......... ..+-+-|..|++..+|.++|.++
T Consensus 66 -----------~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 66 -----------WAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred -----------hCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 2458999999876655111 11556689999999999999875
No 158
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.76 E-value=0.23 Score=64.52 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..++++|+||+++..+......|+.+|+.+..+.+..+|...+.. ..||++++|..++. .++.. ....
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--------~~~dlil~D~~mp~--~~G~~--~~~~ 755 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--------HRFDLVLMDIRMPG--LDGLE--TTQL 755 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCHHH--HHHH
Confidence 456799999999999999999999999999999999999887643 46899999976542 22211 1222
Q ss_pred cCCCC--CcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNG--HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~--~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
++... .....| +++++..............|. +.++.||+....|..++.....
T Consensus 756 ir~~~~~~~~~~p-ii~lt~~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 756 WRDDPNNLDPDCM-IVALTANAAPEEIHRCKKAGM-NHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred HHhchhhcCCCCc-EEEEeCCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHh
Confidence 22211 112233 445555555555555555554 5799999999999988876653
No 159
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.49 E-value=0.13 Score=60.34 Aligned_cols=180 Identities=21% Similarity=0.275 Sum_probs=110.0
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.++|+|||++..+......|+..|+.|..+.+..+|...+... .+|+++.|..+ ++.+.-. .+..++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--------~~~lvl~Di~m--p~~~Gl~--ll~~i~~ 72 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--------PFDLVLLDIRM--PGMDGLE--LLKEIKS 72 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--------CCCEEEEecCC--CCCchHH--HHHHHHh
Confidence 4699999999999999999999999999999999999887652 58999987654 4443321 2222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCC-CC---------CCC-CC
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGR-GV---------PNG-SS 851 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~-~~---------~~~-~~ 851 (1006)
.. ..+|.+++... -+-.....+...|.. .++.||+....+...+.+++.......... .. ..+ +.
T Consensus 73 ~~--~~~pVI~~Tg~-g~i~~AV~A~k~GA~-Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~ 148 (464)
T COG2204 73 RD--PDLPVIVMTGH-GDIDTAVEALRLGAF-DFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESP 148 (464)
T ss_pred hC--CCCCEEEEeCC-CCHHHHHHHHhcCcc-eeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCH
Confidence 21 34566554443 333333333333332 589999999999999888875422111100 00 000 00
Q ss_pred cccc--------ccccceEEEecCcHHHHHHHHHHHhhcCC-------eEEEeCCHHHHHHH
Q 001846 852 FHQG--------LLRGKKILVVDDNGVNRMVAAGALKKFGA-------TVECAASAKAALDK 898 (1006)
Q Consensus 852 ~~~~--------~~~~~~ILvVDDn~~n~~~l~~~L~~~G~-------~v~~a~~g~eAl~~ 898 (1006)
..+. ....-.|||.-..-.=.+++..++.+.+- .+-|+.=..+.++.
T Consensus 149 am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 149 AMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 0000 01223578887777777777777776542 35566655665553
No 160
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.45 E-value=0.27 Score=62.89 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++|+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..++ +.++.. ....
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--------~~~Dlvl~D~~mp--~~~G~e--~~~~ 590 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--------DEYDLVLLDIQLP--DMTGLD--IARE 590 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--------CCCCEEEEcCCCC--CCCHHH--HHHH
Confidence 356789999999999999999999999999999999999887642 4689999987653 222211 1222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
++........|++++++.+... ........|. +.++.||+....+..++.+.+..
T Consensus 591 ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 591 LRERYPREDLPPLVALTANVLK-DKKEYLDAGM-DDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHhccccCCCCcEEEEECCchH-hHHHHHHCCC-CEEEECCCCHHHHHHHHHHHhcc
Confidence 2222222233445555544332 2333444454 57999999999999999887743
No 161
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.43 E-value=0.0066 Score=60.00 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=40.9
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCCC--CCCCCCCcccc--HHHHHHHHHHhCCEEEEEeeCCC-ceEEEEEE
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADSS--TSRHYGGTGIG--LSISKCLVELMRGQISFVSRPQV-GSTFSFTA 675 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s--~s~~~gGtGLG--LsI~k~Lv~lmgG~I~v~S~~g~-GstF~f~l 675 (1006)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|.... ..+++|..
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEE
Confidence 48999999999999999988665433221 12245667888 4433 36788999998653 33444443
No 162
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.31 E-value=0.033 Score=68.63 Aligned_cols=49 Identities=27% Similarity=0.542 Sum_probs=33.9
Q ss_pred EEEEecCCCCChhHHhh--------hccccccCCC---CCCCCCCC-ccccHHHHHHHHHH
Q 001846 606 VCVEDTGIGIPLSAQER--------VFMPFMQADS---STSRHYGG-TGIGLSISKCLVEL 654 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~~--------iF~pF~q~~~---s~s~~~gG-tGLGLsI~k~Lv~l 654 (1006)
|+|.|+|.|||.+..+. +|....-... ..-+..+| .|.||+.+..+.+.
T Consensus 71 I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 71 VSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred EEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee
Confidence 89999999999999888 8877432211 11112233 79999988888543
No 163
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=95.09 E-value=0.61 Score=44.49 Aligned_cols=120 Identities=29% Similarity=0.449 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHH-HHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIK-DASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~-~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~ 778 (1006)
..+.+++++|+++..+......|+.+|..+..+.+.. ++........ .+|++++|..+. +.+ +. ....
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-------~~dlii~D~~mp--~~~-G~-~~~~ 71 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-------QPDLILLDINMP--GMD-GI-ELLR 71 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-------CCCEEEEeCCCC--CCC-HH-HHHH
Confidence 3567899999999999999999999999999999995 8888766521 589999998775 222 11 1122
Q ss_pred hcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHH-HHHHHHHhh
Q 001846 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASM-IAACLQQVL 834 (1006)
Q Consensus 779 ~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~-l~~~l~~~l 834 (1006)
.++.. ....| ++++...............| .+.++.||+.... +...+.+.+
T Consensus 72 ~l~~~--~~~~p-vv~~t~~~~~~~~~~~~~~g-~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 72 RLRAR--GPNIP-VILLTAYADEADRERALAAG-ADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred HHHhC--CCCCC-EEEEEcCcCHHHHHHHHHcC-CCeEEcCCCCcHHHHHHHHHHHH
Confidence 22222 23456 45555554444333334444 3569999976555 555555433
No 164
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.78 E-value=0.31 Score=63.76 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=86.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
.+.++++||+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..++. .++.. ....+
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--------~~~dlvl~D~~mp~--~~g~~--~~~~i 768 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--------HAFDLALLDINLPD--GDGVT--LLQQL 768 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--------CCCCEEEECCCCCC--CCHHH--HHHHH
Confidence 44689999999999999999999999999999999999988754 46899999876532 22211 11222
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+.........++++++..............|+ +.++.||+....|...+...+.
T Consensus 769 r~~~~~~~~~pii~lta~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 769 RAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGF-DGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred HhCccccCCCeEEEEECCCCHHHHHHHHHCCC-CEEEeCCCCHHHHHHHHHHHhc
Confidence 22211111134555555555555555555564 5799999999999999988764
No 165
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.68 E-value=1.3 Score=43.73 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=85.7
Q ss_pred cceEEEe----cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCC--HHHHHHHHHhh
Q 001846 859 GKKILVV----DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMD--GFEATRRIRQM 929 (1006)
Q Consensus 859 ~~~ILvV----DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~md--G~e~~~~IR~~ 929 (1006)
+++||+. |.+..-..++..+|+..||+|... ...++.++.+.+ ..+|+|.+-..|+... --++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4578888 888888999999999999999864 456777777765 5699999998887432 23344444432
Q ss_pred hchhhhhhccCCCCcCCCcccCCCCCcEEEEecCC------CHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 930 ESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV------IHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 930 e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
. ..+++|++ -+.. ..++..++.+.|++......-+.++....|++.++.
T Consensus 82 ~---------------------~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 82 G---------------------LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred C---------------------CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhcc
Confidence 1 11344443 3322 355667899999999999889999999999888754
No 166
>PLN03029 type-a response regulator protein; Provisional
Probab=94.38 E-value=0.67 Score=49.67 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=81.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCC------------CCCCCCCCcEEEEccCccccC
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLT------------SSEDKFQPDIILVEKDCWISG 768 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~------------~~~~~~~~~~ilid~~~~~~~ 768 (1006)
...++|+||+++.........|+.+|+.+..+.+..++...+..... .......+|++++|..+..
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~-- 84 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPG-- 84 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCC--
Confidence 45789999999999999999999999999999999999887643211 1123446889999876542
Q ss_pred CCcchhHhhhhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHh
Q 001846 769 EDSGFNAQLLDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833 (1006)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~ 833 (1006)
.+. ...+..++........|.+ ++...............| .+.++.||+....|.......
T Consensus 85 ~~G--~e~l~~ir~~~~~~~ipvI-ils~~~~~~~~~~al~~G-a~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 85 MTG--YDLLKKIKESSSLRNIPVV-IMSSENVPSRITRCLEEG-AEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred CCH--HHHHHHHHhccccCCCcEE-EEeCCCCHHHHHHHHHhC-chheEECCCCHHHHHHHHHHH
Confidence 221 1122223322222234544 444444444444444445 357999999988876655443
No 167
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.19 E-value=1.3 Score=42.80 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=71.7
Q ss_pred cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCH--HHHHHHHHhhhchhhhhhccC
Q 001846 866 DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMDG--FEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 866 DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
|.+..=...+..+|+..||+|... ...++.++.+.+ ..+|+|.+-..|+..-. -++++++|+..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~---------- 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLRELG---------- 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhcC----------
Confidence 556666677888999999998864 346677777765 56999999887753322 22233333310
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHH
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l 994 (1006)
...+ .|++-+....+..++..++|+|+|+..=-+.++....|
T Consensus 79 -----------~~~i-~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 -----------AGDI-LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred -----------CCCC-EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 1133 45555556677788899999999999877777766554
No 168
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=94.12 E-value=5 Score=46.15 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcc
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRL-GIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~-G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~ 765 (1006)
..+++++|+++..+......|+.. |+.+. .+.+..++...... ..+|++++|..+.
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--------~~~DlVllD~~mp 60 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--------LNPDVITLDVEMP 60 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--------hCCCEEEEeCCCC
Confidence 368999999999999999999886 78776 78888888876532 4689999987654
No 169
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.05 E-value=0.61 Score=60.67 Aligned_cols=119 Identities=21% Similarity=0.274 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.++++||+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..++. .+.-.. ...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--------~~~DlVl~D~~mP~--mdG~el--~~~ 866 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--------NHIDIVLTDVNMPN--MDGYRL--TQR 866 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--------CCCCEEEEcCCCCC--CCHHHH--HHH
Confidence 356799999999999999999999999999999999999987654 46999999987643 222111 111
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++... ...| ++.++......+.......|. +.++.||+....+...+....
T Consensus 867 ir~~~--~~~p-II~lTa~~~~~~~~~~~~aG~-d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 867 LRQLG--LTLP-VIGVTANALAEEKQRCLEAGM-DSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred HHhcC--CCCC-EEEEECCCCHHHHHHHHHCCC-CEEEeCCCCHHHHHHHHHHHH
Confidence 22211 1344 444444444455555555564 579999999999998887654
No 170
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.58 E-value=0.089 Score=64.78 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=32.5
Q ss_pred EEEEecCCCCChhH--------Hhhhc-cccccC--CCCCCCCCCC-ccccHHHHHHHHHH
Q 001846 606 VCVEDTGIGIPLSA--------QERVF-MPFMQA--DSSTSRHYGG-TGIGLSISKCLVEL 654 (1006)
Q Consensus 606 i~V~DtG~GI~~e~--------~~~iF-~pF~q~--~~s~s~~~gG-tGLGLsI~k~Lv~l 654 (1006)
|+|.|+|.|||.+. .+-+| ...... +....+..+| .|.||+.+..+.+.
T Consensus 64 I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 64 IEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred EEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 89999999999988 67677 332111 1111112233 79999999988874
No 171
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=93.51 E-value=0.67 Score=60.34 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++|+++.........|+.+|+.+..+.+..++...+.. ..+||++++|..++. .++.. ....
T Consensus 679 ~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-------~~~~Dlvl~D~~mp~--~~G~~--~~~~ 747 (914)
T PRK11466 679 LDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-------SEPFAAALVDFDLPD--YDGIT--LARQ 747 (914)
T ss_pred cCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-------CCCCCEEEEeCCCCC--CCHHH--HHHH
Confidence 456789999999999999999999999999999999999876542 246899999886543 22211 1112
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
++.. ....| +++++..............|. +.++.||+....+...+.+.+.
T Consensus 748 lr~~--~~~~~-ii~~t~~~~~~~~~~~~~~g~-~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 748 LAQQ--YPSLV-LIGFSAHVIDETLRQRTSSLF-RGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred HHhh--CCCCC-EEEEeCCCchhhHHHHHhcCc-CCEEeCCCCHHHHHHHHHHHhh
Confidence 2221 11334 344444444444444444454 4589999999999999988774
No 172
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.08 E-value=2.2 Score=50.92 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=108.7
Q ss_pred EEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 784 (1006)
++++|+++..+......++..|+.+..+.+..++...+.. ..||++++|..+.. .+. + ..+..++...
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--------~~~DlVllD~~~p~--~~g-~-~ll~~l~~~~ 68 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--------GQPDLLITDVRMPG--EDG-L-DLLPQIKKRH 68 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEEcCCCCC--CCH-H-HHHHHHHHhC
Confidence 4789999999999999999999999999999988876542 36899999876532 211 1 1111222111
Q ss_pred CcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccccccccCCCCCCCCCccccccccceEEE
Q 001846 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTENKRQAGRGVPNGSSFHQGLLRGKKILV 864 (1006)
Q Consensus 785 ~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ILv 864 (1006)
.. .+++++...............| .+.++.||+....+...+...+.......... ... ...+....+
T Consensus 69 --~~-~~vIvlt~~~~~~~~~~a~~~G-a~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~-~~~-------~~~~~~~~l 136 (463)
T TIGR01818 69 --PQ-LPVIVMTAHSDLDTAVAAYQRG-AFEYLPKPFDLDEAVTLVERALAHAQEQVALP-ADA-------GEAEDSAEL 136 (463)
T ss_pred --CC-CeEEEEeCCCCHHHHHHHHHcC-cceeecCCCCHHHHHHHHHHHHHHHHHHHhhh-hhh-------hccccccce
Confidence 12 3444555444443344444444 35789999999999888877654322111100 000 001112458
Q ss_pred ecCcHHHHHHHHHHHhhcCCe--EEE---eCCHHHHHHHh----cCCCCCcEEEEeCCC
Q 001846 865 VDDNGVNRMVAAGALKKFGAT--VEC---AASAKAALDKL----QSPHCFDACFMDIQM 914 (1006)
Q Consensus 865 VDDn~~n~~~l~~~L~~~G~~--v~~---a~~g~eAl~~l----~~~~~~DlIlmDi~M 914 (1006)
+.+++.++.++..+.+..+.. +.. ...|++.+... .....--++..||..
T Consensus 137 ig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~ 195 (463)
T TIGR01818 137 IGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAA 195 (463)
T ss_pred eecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCC
Confidence 899999998888776544333 222 34566655432 111223566667654
No 173
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=92.83 E-value=2 Score=44.89 Aligned_cols=119 Identities=21% Similarity=0.294 Sum_probs=77.9
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........|+..|+.+..+.+..++...... ..||++++|..... .+ + ......++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~d~vi~d~~~~~--~~-g-~~~~~~l~~ 70 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--------RGPDLILLDWMLPG--TS-G-IELCRRLRR 70 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--------cCCCEEEEECCCCC--Cc-H-HHHHHHHHc
Confidence 578999999999999999999999999888898888876543 46899999876532 11 1 112222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.......| ++++...............| .+.++.||.....+...+...+.
T Consensus 71 ~~~~~~~~-ii~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 71 RPETRAIP-IIMLTARGEEEDRVRGLETG-ADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred cccCCCCC-EEEEecCCCHHHHHHHHhcC-cceEEeCCCCHHHHHHHHHHHhc
Confidence 21112334 44444443333333344444 45789999999998888877664
No 174
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=92.80 E-value=2 Score=45.40 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=78.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........|+..|+.+..+.+..++...... ..||++++|..... .+. ......++.
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~g--~~~~~~l~~ 70 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--------PWPDLILLDWMLPG--GSG--IQFIKHLKR 70 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------cCCCEEEEeCCCCC--CCH--HHHHHHHHh
Confidence 578999999999999999999999999999998888876532 46899999876532 111 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.......|.+ +++..............| .+.++.||.....+...+...+.
T Consensus 71 ~~~~~~~pvi-~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 71 ESMTRDIPVV-MLTARGEEEDRVRGLETG-ADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred ccccCCCCEE-EEECCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHh
Confidence 2111234444 444443433333444444 45799999999999888877654
No 175
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=92.78 E-value=0.57 Score=44.79 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCC--CCHHHHHHHHHhhhchhhhhhccCCCCcCCCccc
Q 001846 873 MVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPE--MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950 (1006)
Q Consensus 873 ~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~ 950 (1006)
..+...|++.|++|..+.+.++|+..++.....+.|++|+. ++ ....+++++||..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 45667788899999999999999999988777899999985 11 1235677777763
Q ss_pred CCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHH
Q 001846 951 DELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENL 990 (1006)
Q Consensus 951 ~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L 990 (1006)
...+||.+++.....+..-...-.-.++|+-..-+-.++
T Consensus 65 -~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 65 -NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 237999999987655555556666789999887655444
No 176
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=92.54 E-value=8.3 Score=44.03 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=44.0
Q ss_pred CeEEEEcCchhHHHHHHHHH-HHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcc
Q 001846 703 LKAVVVDEKPVRAAVTQYHL-NRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCW 765 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l-~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~ 765 (1006)
++++++|+++..+......| +..|+.+. .+++..++...+.. ..||++++|.++.
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--------~~pDlVllD~~mp 57 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--------QPPDVILMDLEMP 57 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--------cCCCEEEEcCCCC
Confidence 37899999999999988888 57788875 67888888876543 4689999987653
No 177
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=92.49 E-value=0.22 Score=61.58 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=24.6
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHhccCCCC---eEEEEE
Q 001846 488 PEFVLG--DPGRFRQIITNLVGNSVKFTERG---HIFVKV 522 (1006)
Q Consensus 488 p~~v~g--D~~rl~QIl~NLl~NAiKfT~~G---~I~v~v 522 (1006)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 26 PgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i 65 (638)
T PRK05644 26 PGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTI 65 (638)
T ss_pred CCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEE
Confidence 444544 56779999999999999844345 566655
No 178
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=92.18 E-value=2.9 Score=43.58 Aligned_cols=117 Identities=17% Similarity=0.321 Sum_probs=77.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++|+++.........|+..|+.+..+.+..++...... ..||++++|.+... .+ +. ..+..++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~d~illd~~~~~--~~-g~-~~~~~l~~ 68 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--------GHYSLVVLDLGLPD--ED-GL-HLLRRWRQ 68 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--------CCCCEEEEECCCCC--CC-HH-HHHHHHHh
Confidence 368999999999999999999999999988898888776543 36899999876532 11 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| ++++....+..........| .+.++.||.....+.+.+...+.
T Consensus 69 ~~--~~~p-ii~ls~~~~~~~~~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 69 KK--YTLP-VLILTARDTLEDRVAGLDVG-ADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred cC--CCCc-EEEEECCCCHHHHHHHHhcC-CCeEEeCCCCHHHHHHHHHHHHh
Confidence 11 1234 34444444444433444444 35789999999998888877664
No 179
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=92.14 E-value=2.9 Score=44.09 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=77.2
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++++++.........|+..|+.+..+.+..++...... ..||++++|..... .+. ......++.
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~~~~--~~g--~~~~~~lr~ 68 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--------GDYDLIILDIMLPD--VNG--WDIVRMLRS 68 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--------CCCCEEEEECCCCC--CCH--HHHHHHHHh
Confidence 368999999999999999999999999999998888765432 46899999876432 111 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| ++++...............| .+.++.||.....+...+...+.
T Consensus 69 ~~--~~~p-ii~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 69 AN--KGMP-ILLLTALGTIEHRVKGLELG-ADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred cC--CCCC-EEEEEcCCCHHHHHHHHhCC-CCEEEeCCCCHHHHHHHHHHHHh
Confidence 11 1334 34444444444433444444 45799999999999888877664
No 180
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=92.12 E-value=0.21 Score=62.13 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=23.7
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHhccCCCC---eEEEEE
Q 001846 488 PEFVLG--DPGRFRQIITNLVGNSVKFTERG---HIFVKV 522 (1006)
Q Consensus 488 p~~v~g--D~~rl~QIl~NLl~NAiKfT~~G---~I~v~v 522 (1006)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 19 P~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 19 PGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 444444 45679999999999999833334 555555
No 181
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=92.08 E-value=2.8 Score=44.65 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=78.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..+++++++++.........++..|+.+..+.+..++...... ..||++++|..... .+ + ......++
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~-g-~~~~~~lr 72 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--------ESFHLMVLDLMLPG--ED-G-LSICRRLR 72 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-H-HHHHHHHH
Confidence 4679999999999999999999999999999999888766532 46899999876432 11 1 11122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
... ...| ++++....+..........| .+.++.||+....+.+.+...+..
T Consensus 73 ~~~--~~~p-ii~ls~~~~~~~~~~~l~~G-a~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 73 SQN--NPTP-IIMLTAKGEEVDRIVGLEIG-ADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred hcC--CCCC-EEEEECCCcHHHHHHHHhcC-CCeEEECCCCHHHHHHHHHHHhcc
Confidence 211 1234 44444444433333333344 467999999999999888877643
No 182
>PRK11173 two-component response regulator; Provisional
Probab=92.08 E-value=3.1 Score=44.30 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=77.8
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++++++.........|+..|+.+..+.+..++...+.. ..||++++|..... .+ +. .....++.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~-g~-~~~~~lr~ 71 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--------NDINLVIMDINLPG--KN-GL-LLARELRE 71 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--------CCCCEEEEcCCCCC--CC-HH-HHHHHHhc
Confidence 478999999999999999999999999999999988876543 46899999876532 11 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...|. ++++..............| .+.++.||.....+...+...+.
T Consensus 72 ~---~~~pi-i~lt~~~~~~~~~~~~~~g-a~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 72 Q---ANVAL-MFLTGRDNEVDKILGLEIG-ADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred C---CCCCE-EEEECCCCHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHHHh
Confidence 2 13444 4444444433333333444 56799999999988877776654
No 183
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=91.96 E-value=2.9 Score=43.55 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++|+++.........|+..|+.+..+.+..++...... ..||++++|...... ....... .++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~~-~g~~~~~---~i~~ 68 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--------APYDAVILDLTLPGM-DGRDILR---EWRE 68 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--------CCCCEEEEECCCCCC-CHHHHHH---HHHh
Confidence 368999999999999999999999999888888888765432 468999998765321 1111122 2221
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| +++++..............| .+.++.||.....+...+...+.
T Consensus 69 ~~--~~~~-ii~lt~~~~~~~~~~~~~~g-a~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 69 KG--QREP-VLILTARDALAERVEGLRLG-ADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cC--CCCc-EEEEECCCCHHHHHHHHhCC-CCeEEECCCCHHHHHHHHHHHHh
Confidence 11 1233 44444444433333333444 45789999999998888876654
No 184
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=91.95 E-value=2.3 Score=44.71 Aligned_cols=115 Identities=15% Similarity=0.326 Sum_probs=72.7
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCEE-EEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIMV-KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~v-~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
+++|+|||++..+++-+.+++.+ |+++ -.+.+.++|...+.. ..||+|++|--++. +.+..+... +
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--------~~pDLILLDiYmPd-~~Gi~lL~~---i 68 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--------FKPDLILLDIYMPD-GNGIELLPE---L 68 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--------hCCCEEEEeeccCC-CccHHHHHH---H
Confidence 36899999999999998888874 5554 467889998887765 46799999854432 222223222 2
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHh
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~ 833 (1006)
+... -...+++++..-...-....-..|.. .++.||+....+..+|.+.
T Consensus 69 r~~~---~~~DVI~iTAA~d~~tI~~alr~Gv~-DYLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 69 RSQH---YPVDVIVITAASDMETIKEALRYGVV-DYLIKPFTFERLQQALTRY 117 (224)
T ss_pred HhcC---CCCCEEEEeccchHHHHHHHHhcCch-hheecceeHHHHHHHHHHH
Confidence 2211 12233444333333333444445554 4899999999998888654
No 185
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=91.79 E-value=3 Score=43.94 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=76.5
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcccc-CCCcchhHhhhhcCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS-GEDSGFNAQLLDWKP 782 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~-~~~~~~~~~~~~~~~ 782 (1006)
+++++|+++.........|+..|+.+..+.+..++...+.. ..||++++|...... .....+.. .++.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~~~~~g~~~~~---~i~~ 70 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--------RLPDLAIIDIGLGEEIDGGFMLCQ---DLRS 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--------CCCCEEEEECCCCCCCCCHHHHHH---HHHh
Confidence 58999999999999999999999999888888888776543 468999998765321 01112222 2222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|. ++++..............| .+.++.||.....+.+.+...+.
T Consensus 71 ~~--~~~pi-i~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 71 LS--ATLPI-IFLTARDSDFDTVSGLRLG-ADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred cC--CCCCE-EEEECCCCHHHHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHH
Confidence 11 13443 4444444433333344444 46799999999998888877664
No 186
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=91.79 E-value=2.9 Score=43.94 Aligned_cols=117 Identities=24% Similarity=0.388 Sum_probs=77.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++++++.........|+..|+.+..+.+..++...+.. ..||++++|..... .+ +. .....++.
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--------~~~dlvild~~l~~--~~-g~-~l~~~lr~ 68 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--------HLPDIAIVDLGLPD--ED-GL-SLIRRWRS 68 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--------CCCCEEEEECCCCC--CC-HH-HHHHHHHh
Confidence 368999999999999999999999999999999998776532 46899999865432 11 11 11122222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|.+ ++....+..........| .+.++.||.....+...+...+.
T Consensus 69 ~~--~~~pii-~ls~~~~~~~~~~~l~~G-a~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 69 ND--VSLPIL-VLTARESWQDKVEVLSAG-ADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred cC--CCCCEE-EEEcCCCHHHHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHh
Confidence 11 134444 444444433333344444 45799999999999888877664
No 187
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=91.69 E-value=2.8 Score=44.24 Aligned_cols=119 Identities=8% Similarity=0.092 Sum_probs=76.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCC-E-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCcccc--CCCcchhHhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGI-M-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWIS--GEDSGFNAQL 777 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~-~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~--~~~~~~~~~~ 777 (1006)
+++++++|+++.........|+..+. . +..+.+..++...+.. ..||++++|...... .....+...+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--------~~~DlvllD~~l~~~~~~~g~~~~~~l 74 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--------LDAHVLITDLSMPGDKYGDGITLIKYI 74 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--------CCCCEEEEeCcCCCCCCCCHHHHHHHH
Confidence 36899999999999999999988765 2 6667888888776543 468999998765321 1122222222
Q ss_pred hhcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 778 LDWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 778 ~~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.... ...++++++...+..........| .+.++.||.....+..++..+..
T Consensus 75 ~~~~------~~~~iIvls~~~~~~~~~~a~~~G-a~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 75 KRHF------PSLSIIVLTMNNNPAILSAVLDLD-IEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred HHHC------CCCcEEEEEecCCHHHHHHHHHCC-CeEEEECCCCHHHHHHHHHHHHC
Confidence 2211 123455555544444444444444 35789999999999888877653
No 188
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=91.49 E-value=3.4 Score=43.55 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=75.9
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++|+++.........|+..|+.+..+.+..++..... ..||++++|..... .+. ......++..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~---------~~~d~vl~d~~~~~--~~g--~~~~~~l~~~ 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---------DSIDLLLLDVMMPK--KNG--IDTLKELRQT 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh---------cCCCEEEEeCCCCC--CcH--HHHHHHHHhc
Confidence 6899999999999999999999999998888888876532 25899999876532 111 1122222222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ..| +++++..............| .+.++.||.....+...+...+.
T Consensus 70 ~---~~~-ii~lt~~~~~~~~~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 H---QTP-VIMLTARGSELDRVLGLELG-ADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred C---CCc-EEEEECCCCHHHHHHHHHcC-CCEEEcCCCCHHHHHHHHHHHHh
Confidence 2 134 44444433433333344444 45799999999999888877664
No 189
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=91.27 E-value=3.5 Score=40.96 Aligned_cols=115 Identities=20% Similarity=0.187 Sum_probs=76.7
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
..++|||+......+...+++-|+.|..+.+..+++...+. .+|...++|...-. +.+......+.+.+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--------~~PayAvvDlkL~~-gsGL~~i~~lr~~~-- 79 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--------APPAYAVVDLKLGD-GSGLAVIEALRERR-- 79 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--------CCCceEEEEeeecC-CCchHHHHHHHhcC--
Confidence 57899999999999999999999999999999999988765 46777777765432 22222222222222
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
..-.+++++..-+-.........| .+.++.||.....+..++.+..
T Consensus 80 ----~d~rivvLTGy~sIATAV~AvKlG-A~~YLaKPAdaDdi~aAl~~~~ 125 (182)
T COG4567 80 ----ADMRIVVLTGYASIATAVEAVKLG-ACDYLAKPADADDILAALLRRE 125 (182)
T ss_pred ----CcceEEEEecchHHHHHHHHHHhh-hhhhcCCCCChHHHHHHHhhcC
Confidence 223455555443333322222223 3468999999999888886653
No 190
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=91.01 E-value=4 Score=43.54 Aligned_cols=117 Identities=13% Similarity=0.233 Sum_probs=76.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHc-CC-EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRL-GI-MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~-G~-~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+++++|+++..+......++.. |+ .+..+.+..++...... ..||++++|..+.. .+. + ..+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--------~~pdlvllD~~mp~--~~g-l-e~~~~ 71 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--------FKPGLILLDNYLPD--GRG-I-NLLHE 71 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--------cCCCEEEEeCCCCC--CcH-H-HHHHH
Confidence 468999999999999999899864 77 46788899888877643 46899999876532 221 1 11112
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++... ... ++++++..............| .+.++.||.....+..++....
T Consensus 72 l~~~~--~~~-~iivls~~~~~~~~~~al~~G-a~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 72 LVQAH--YPG-DVVFTTAASDMETVSEAVRCG-VFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred HHhcC--CCC-CEEEEEcCCCHHHHHHHHHcC-ccEEEECCcCHHHHHHHHHHHH
Confidence 22111 112 345555444444444444444 4579999999999988887654
No 191
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=90.97 E-value=4.6 Score=42.39 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=76.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........|+..|+.+..+.+..++...... ..||++++|..... .+. . .....++.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~g-~-~~~~~lr~ 69 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--------RKPDLIILDLGLPD--GDG-I-EFIRDLRQ 69 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCH-H-HHHHHHHc
Confidence 368999999999999999999999999988888888765432 46899999876532 111 1 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...|.++ +...............| .+.++.||+....+.+.+...+.
T Consensus 70 ~---~~~pvi~-lt~~~~~~~~~~~~~~g-a~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 70 W---SAIPVIV-LSARSEESDKIAALDAG-ADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred C---CCCCEEE-EECCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHh
Confidence 1 1345444 44333333333333344 45799999999999888877664
No 192
>PRK13856 two-component response regulator VirG; Provisional
Probab=90.90 E-value=4.2 Score=43.54 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=76.1
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++++++.........|+..|+.+..+.+..++...... ..||++++|..... .+ +. ..+..++..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvi~d~~l~~--~~-g~-~l~~~i~~~ 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--------ETVDVVVVDLNLGR--ED-GL-EIVRSLATK 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--------CCCCEEEEeCCCCC--CC-HH-HHHHHHHhc
Confidence 68999999999999999999999999999998888766533 46899999876532 11 11 112222221
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...|.+++................| .+.++.||.....+.+.+...+.
T Consensus 71 ---~~~pii~lt~~~~~~~~~~~~l~~G-a~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ---SDVPIIIISGDRLEEADKVVALELG-ATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ---CCCcEEEEECCCCcHHHHHHHHhcC-cCeEEeCCCCHHHHHHHHHHHHh
Confidence 1345444332222333333333334 46799999999998888876664
No 193
>PRK13435 response regulator; Provisional
Probab=90.88 E-value=2.5 Score=41.31 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
..+++++++++.........+...|+.+. .+++..++...... ..||++++|...........+... .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~dliivd~~~~~~~~~~~~~~~---l 73 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--------RQPDVALVDVHLADGPTGVEVARR---L 73 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--------cCCCEEEEeeecCCCCcHHHHHHH---H
Confidence 46899999999999999999999999876 67888887765432 368999998754211111112122 1
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+.. ...| ++++..... . ......| .+.++.||+....+.+.+.+...
T Consensus 74 ~~~---~~~p-ii~ls~~~~--~-~~~~~~g-a~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 74 SAD---GGVE-VVFMTGNPE--R-VPHDFAG-ALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred HhC---CCCC-EEEEeCCHH--H-HHHHhcC-cceeEeCCCCHHHHHHHHHHHHh
Confidence 111 1234 444443322 1 1222233 45789999999999998887763
No 194
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.87 E-value=3.3 Score=39.53 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCC--CHHHHHHHHHhhhchhhhhhccC
Q 001846 866 DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEM--DGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 866 DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
|.+..-..++..+|+..||+|... .+.++.++.+.+ ..||+|.+-..|... +..++++.+|+..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~---------- 78 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-EDADAIGLSGLLTTHMTLMKEVIEELKEAG---------- 78 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHcC----------
Confidence 556667788999999999998653 345666777765 569999998875543 3344555555421
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeC
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~K 983 (1006)
...++ |++-+.......+.+.+.|+|.|+..
T Consensus 79 -----------~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 79 -----------LDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred -----------CCCCe-EEEECCCCChhHHHHHHcCCeEEECC
Confidence 01344 45555555555567889999988763
No 195
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=90.81 E-value=4.7 Score=42.19 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=76.6
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++++++.........++..|+.+..+.+..++...... ..+|++++|..... .+. ......++.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvild~~l~~--~~g--~~~~~~lr~ 70 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--------QHVDLILLDINLPG--EDG--LMLTRELRS 70 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCH--HHHHHHHHh
Confidence 578999999999999999999999999999999988766542 46899999875422 111 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...| +++++..............| .+.++.||+....+...+...+.
T Consensus 71 ~---~~~~-ii~l~~~~~~~~~~~~l~~G-a~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 71 R---STVG-IILVTGRTDSIDRIVGLEMG-ADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred C---CCCC-EEEEECCCcHHHHHHHHHcC-CCcEEeCCCCHHHHHHHHHHHHh
Confidence 2 1344 34444444443333333444 45799999999988887766553
No 196
>PRK05218 heat shock protein 90; Provisional
Probab=90.77 E-value=0.77 Score=56.73 Aligned_cols=58 Identities=16% Similarity=0.333 Sum_probs=37.8
Q ss_pred EEEEEecCCCCChhHHhhhccccccCC------------CCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeCC
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQAD------------SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRPQ 666 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~------------~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~g 666 (1006)
.|.|+|||+||+.+++...|...-... .+...-.|-.|+|+.= +=..+-++.|.|+..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~~ 143 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRSA 143 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcCC
Confidence 389999999999999988764433211 0112234668899852 223356888988763
No 197
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=90.63 E-value=5.2 Score=41.79 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=77.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++++++.........++..|+.+..+.+..++...... ..||++++|..... .+ +. .....++.
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--------~~~dlvi~d~~~~~--~~-g~-~~~~~l~~ 68 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--------DDYALIILDIMLPG--MD-GW-QILQTLRT 68 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEECCCCC--CC-HH-HHHHHHHc
Confidence 468999999999999999999999999999999888776532 46899999876432 11 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...|. +++...............| .+.++.||.....+...+...+.
T Consensus 69 ~---~~~~i-i~ls~~~~~~~~~~a~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 69 A---KQTPV-ICLTARDSVDDRVRGLDSG-ANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred C---CCCCE-EEEECCCCHHHHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHc
Confidence 1 12344 4444444444343444444 35799999999999888877664
No 198
>CHL00148 orf27 Ycf27; Reviewed
Probab=90.44 E-value=5 Score=42.50 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=77.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
.++++++|+++.........++..|+.+..+.+..++...... ..||++++|..... .+ +. ..+..++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--------~~~d~illd~~~~~--~~-g~-~~~~~l~ 73 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--------EQPDLVILDVMMPK--LD-GY-GVCQEIR 73 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCC--CC-HH-HHHHHHH
Confidence 4689999999999999999999999999888888888766532 46899999876532 11 11 1112222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|. ++++..............| .+.++.||.....+...+...+.
T Consensus 74 ~~---~~~~i-i~ls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 74 KE---SDVPI-IMLTALGDVSDRITGLELG-ADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred hc---CCCcE-EEEECCCCHHhHHHHHHCC-CCEEEeCCCCHHHHHHHHHHHHh
Confidence 21 13444 4444443333333333444 45789999999999888877654
No 199
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=90.39 E-value=4.6 Score=43.03 Aligned_cols=115 Identities=23% Similarity=0.211 Sum_probs=76.7
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPN 783 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 783 (1006)
+++++++++.........|+..|+.+..+.+..++...+.. ..||++++|..+.. .+. + .....++..
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--------~~~dlvild~~l~~--~~g-~-~~~~~ir~~ 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--------EQPDLVLLDIMLPG--KDG-M-TICRDLRPK 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCC--CCH-H-HHHHHHHhc
Confidence 68999999999999999999999999999998888776543 46899999876532 111 1 111222221
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...|.+ ++...............| .+.++.||+....+...+...+.
T Consensus 71 ---~~~pii-~l~~~~~~~~~~~~~~~G-a~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 71 ---WQGPIV-LLTSLDSDMNHILALEMG-ACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred ---CCCCEE-EEECCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHh
Confidence 123443 444444433333344444 45799999999998888876654
No 200
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.37 E-value=1.5 Score=47.87 Aligned_cols=114 Identities=20% Similarity=0.309 Sum_probs=80.6
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
+++++||++......+...|++.|-.+..+++..+|+..+.+ ..||++++|-.+.. ..+..|..+..++.+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--------~kpDLifldI~mp~-~ngiefaeQvr~i~~ 71 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--------FKPDLIFLDIVMPY-MNGIEFAEQVRDIES 71 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--------cCCCEEEEEeecCC-ccHHHHHHHHHHhhc
Confidence 378999999999999999999999888889999999988776 68999999876532 123455556555542
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
..| ++++++. .+......+-+.+.++.||+.+..|..++....
T Consensus 72 -----~v~-iifIssh---~eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~ 114 (361)
T COG3947 72 -----AVP-IIFISSH---AEYADDSFGMNLDDYLPKPVTPEKLNRAIDRRL 114 (361)
T ss_pred -----cCc-EEEEecc---hhhhhhhcccchHhhccCCCCHHHHHHHHHHHh
Confidence 233 3333332 222222233345679999999999988887665
No 201
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=90.25 E-value=2.7 Score=47.47 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
.....+++|||.+.....++..|+..|+.+..+.+.+.+...... .++|+++.|..++ +.+.. ..+..
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--------~~~dlvllD~~mp--~mdg~--ev~~~ 79 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--------EPPDLVLLDVRMP--EMDGA--EVLNK 79 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--------cCCceEEeeccCC--CccHH--HHHHH
Confidence 345789999999999999999999999999999999987766443 3599999987653 33322 22333
Q ss_pred cCC-CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHH
Q 001846 780 WKP-NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACL 830 (1006)
Q Consensus 780 ~~~-~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l 830 (1006)
++. ++.....|.+++.+-. ..........+ -.+.++.||++...+....
T Consensus 80 lk~~~p~t~~ip~i~lT~~~-d~~~~~~~~~~-g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 80 LKAMSPSTRRIPVILLTAYA-DSEDRQRALEA-GADDYLSKPISPKELVARV 129 (360)
T ss_pred HHhcCCcccccceEEEeecC-ChHHHHHHHHh-hHHHHhcCCCCHHHHHHHH
Confidence 333 3344455655444333 33333333443 4567999999977665544
No 202
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=90.23 E-value=5.1 Score=41.29 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=76.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
++++++|+++.........|+..|+.+. .+.+..++...... ..||++++|...... ....+...+....
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--------~~~dlvi~d~~~~~~-~g~~~~~~l~~~~ 71 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--------LKPDIVIIDVDIPGV-NGIQVLETLRKRQ 71 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--------cCCCEEEEeCCCCCC-CHHHHHHHHHhhC
Confidence 4689999999999999999999999986 57888888766543 468999998764321 1111222222111
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...| ++++...............| .+.++.||.....+...+...+.
T Consensus 72 -----~~~~-ii~ls~~~~~~~~~~~~~~g-a~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 72 -----YSGI-IIIVSAKNDHFYGKHCADAG-ANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred -----CCCe-EEEEeCCCCHHHHHHHHHCC-CCEEEecCCCHHHHHHHHHHHHc
Confidence 1223 44454443433333444444 46799999999999988887763
No 203
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.15 E-value=0.82 Score=44.53 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEEEEee
Q 001846 498 FRQIITNLVGNSVKFTERGHIFVKVHLAE 526 (1006)
Q Consensus 498 l~QIl~NLl~NAiKfT~~G~I~v~v~~~~ 526 (1006)
+--+...|+.||+||...|.|.|..++..
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~s 92 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLYS 92 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEecc
Confidence 33467789999999999999999988754
No 204
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=90.08 E-value=4.5 Score=44.13 Aligned_cols=120 Identities=20% Similarity=0.223 Sum_probs=77.7
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
.+++++|+++.........++.. ++. +..+.+..++...+.. ..||++++|..+.. .++ . ..+..+
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--------~~~DlvllD~~mp~--~dG-~-~~l~~i 70 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--------QQPDVVVLDIIMPH--LDG-I-GVLEKL 70 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCC--CCH-H-HHHHHH
Confidence 57999999999999888888864 444 3467888888876643 46899999876532 221 1 111122
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
+... ....|++++++..............|. +.++.||+....+...+.++...
T Consensus 71 ~~~~-~~~~~~iI~lt~~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 71 NEIE-LSARPRVIMLSAFGQEKITQRAVALGA-DYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred Hhhc-cccCCeEEEEeCCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHcc
Confidence 2211 112355666655444444444445554 46899999999999999887643
No 205
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=90.08 E-value=5.5 Score=41.63 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=76.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........++..|+.+..+.+..++...... ..||++++|...... + + ...+..++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvl~d~~~~~~--~-g-~~~~~~l~~ 71 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--------QPPDLVILDVGLPDI--S-G-FELCRQLLA 71 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--------CCCCEEEEeCCCCCC--C-H-HHHHHHHHh
Confidence 478999999999998999999999999888888888765432 468999998765321 1 1 111222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
.. ...| ++++...............| .+.++.||.....+...+...+..
T Consensus 72 ~~--~~~~-ii~ls~~~~~~~~~~a~~~G-a~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 72 FH--PALP-VIFLTARSDEVDRLVGLEIG-ADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred hC--CCCC-EEEEEcCCcHHHHHHHhhcC-CCeEEECCCCHHHHHHHHHHHHCc
Confidence 11 1234 34444433333333333344 457999999999998888776643
No 206
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=89.72 E-value=4 Score=42.15 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=78.8
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcc-hhHhhhhcC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG-FNAQLLDWK 781 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~-~~~~~~~~~ 781 (1006)
.-+.+|||+...+......|+..|+.+.+.+|..+.+.... ...|-.++.|-. +++.++- +...+....
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--------~~~pGclllDvr--MPg~sGlelq~~L~~~~ 74 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--------LDRPGCLLLDVR--MPGMSGLELQDRLAERG 74 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--------CCCCCeEEEecC--CCCCchHHHHHHHHhcC
Confidence 34778999999999999999999999999999999886522 234556776654 4444432 333333322
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhccc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLSTE 837 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~~ 837 (1006)
..+|.+++.. .-.-.-.-.....|-. .+|.||++.+.+.+++++.+...
T Consensus 75 -----~~~PVIfiTG-hgDIpmaV~AmK~GAv-DFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 75 -----IRLPVIFLTG-HGDIPMAVQAMKAGAV-DFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred -----CCCCEEEEeC-CCChHHHHHHHHcchh-hHHhCCCchHHHHHHHHHHHHHH
Confidence 3466655543 3333333333334443 48999999999999998887543
No 207
>PRK15115 response regulator GlrR; Provisional
Probab=89.70 E-value=3.5 Score=48.97 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=79.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..++++||+++.........++..|+.+..+.+..++...+.. ..||++++|..+.. .+ ++. .+..++
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--------~~~dlvilD~~lp~--~~-g~~-ll~~l~ 72 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--------EKVDLVISDLRMDE--MD-GMQ-LFAEIQ 72 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--------CCCCEEEEcCCCCC--CC-HHH-HHHHHH
Confidence 4789999999999999999999999999999999999876543 46899999876532 21 111 111222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. .... ++++++...+..........|. ..++.||+....+...+...+.
T Consensus 73 ~~--~~~~-pvIvlt~~~~~~~~~~a~~~Ga-~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 73 KV--QPGM-PVIILTAHGSIPDAVAATQQGV-FSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred hc--CCCC-cEEEEECCCCHHHHHHHHhcCh-hhhccCCCCHHHHHHHHHHHHH
Confidence 21 1123 3445554444444444444443 4689999999999888877664
No 208
>PRK14083 HSP90 family protein; Provisional
Probab=89.63 E-value=0.35 Score=59.25 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=33.6
Q ss_pred EEEEEecCCCCChhHHhhhccccccCC-------CCCCCCCCCccccHHHHHHHHHHhCCEEEEEeeC
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQAD-------SSTSRHYGGTGIGLSISKCLVELMRGQISFVSRP 665 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~-------~s~s~~~gGtGLGLsI~k~Lv~lmgG~I~v~S~~ 665 (1006)
.++|+|||+||+.++..+.|--..... .......|..|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 489999999999999888763222110 01112346788887644333 2344555544
No 209
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=89.54 E-value=3.4 Score=53.32 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++|+++.........|..+|+.+..+.+..++...+... ...+|+++++ ++..+.. .....
T Consensus 695 ~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~------~~~~DlVll~----~~~~~g~--~l~~~ 762 (828)
T PRK13837 695 GRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKG------PERFDLVLVD----DRLLDEE--QAAAA 762 (828)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC------CCCceEEEEC----CCCCCHH--HHHHH
Confidence 4577899999999999999999999999999999999999876432 2357999982 1222211 11111
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
++.. ....| ++++...............| +.++.||+....+...+...+..
T Consensus 763 l~~~--~~~ip-IIvls~~~~~~~~~~~~~~G--~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 763 LHAA--APTLP-IILGGNSKTMALSPDLLASV--AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred HHhh--CCCCC-EEEEeCCCchhhhhhHhhcc--CcEEeCCCCHHHHHHHHHHHHcc
Confidence 2211 12334 44444444444444444445 67999999999999999887753
No 210
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=88.68 E-value=3.7 Score=48.59 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..+++++|+++.........++.+|+.+..+.+..++...+.. ..+|++++|..+.. .+ ++ .....++
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--------~~~DlvilD~~m~~--~~-G~-~~~~~ir 72 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--------QVFDLVLCDVRMAE--MD-GI-ATLKEIK 72 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-HH-HHHHHHH
Confidence 4689999999999999999999999999999999998876542 46899999876532 11 11 1111121
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ..+.+++++..............| ...++.||+....+..++...+.
T Consensus 73 ~~~---~~~~vi~lt~~~~~~~~~~a~~~g-a~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 73 ALN---PAIPVLIMTAYSSVETAVEALKTG-ALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred hhC---CCCeEEEEECCCCHHHHHHHHHhh-hHHHhcCCCCHHHHHHHHHHHHH
Confidence 111 123344444443333333333333 34688999999888888776553
No 211
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=88.30 E-value=43 Score=40.97 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHh----cCCceeeece-eecCCcccceEEEeecccCCCCCCCCHHHHHHhhccceecccchhHHHHHHH
Q 001846 192 EEDRENILRARA----TGKAVLTRPF-RLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLL 265 (1006)
Q Consensus 192 ~~~r~~i~~Ar~----tg~~~lt~p~-~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll 265 (1006)
|..|.....|.. .+...++.|+ .-..++.+.+.+..|||..+ .+.|+++..++++.+.+.+-
T Consensus 202 ~~~r~WY~~a~~~~~~~~~~~~~~~~~~d~~tg~~vit~s~pv~~~g------------~~~GVv~~di~l~~l~~~l~ 268 (570)
T PRK15426 202 YVTQPWFIGQSQRRNPGRGVRWFTSQPDDASNTEPQVTASVPVDAGN------------YWYGVLAMDIPVRSLQQFLR 268 (570)
T ss_pred cccChHHHhhhhhcCCCCCeeEecCCcccccCCCeEEEEEEEEccCC------------eEEEEEEEEecHHHHHHHHH
Confidence 444566666654 2344467675 43445566777888998632 23799999999987766544
No 212
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=87.83 E-value=1.9 Score=53.73 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=65.4
Q ss_pred eEEEecCcH-HH-----HHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhh
Q 001846 861 KILVVDDNG-VN-----RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934 (1006)
Q Consensus 861 ~ILvVDDn~-~n-----~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~ 934 (1006)
+|+|||++- .+ .+.+...|++.|++|..+.+..+++...+.....++|++|.+-. ..+++++||+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 567776662 22 45566788889999999999999999887666788999995332 24578888763
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
...+||+++.............-.-.++|+.
T Consensus 74 -----------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (713)
T PRK15399 74 -----------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFE 104 (713)
T ss_pred -----------------CCCCCEEEEcCccccccCChhHhhhcceeee
Confidence 2369999987654333222222223455555
No 213
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=87.79 E-value=7 Score=46.76 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=77.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.++++||+++.........++..|+.+..+.+..++...+.. ..+|++++|..+.. .+. . ..+..++.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--------~~~DlvllD~~lp~--~dg-l-~~l~~ir~ 71 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--------KTPDVLLSDIRMPG--MDG-L-ALLKQIKQ 71 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--------CCCCEEEECCCCCC--CCH-H-HHHHHHHh
Confidence 579999999999999999999999999999999998877643 46899999876532 221 1 11122221
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| +++++..............| ...++.||+....+...+...+.
T Consensus 72 ~~--~~~p-vIvlt~~~~~~~~~~a~~~G-a~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 72 RH--PMLP-VIIMTAHSDLDAAVSAYQQG-AFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred hC--CCCe-EEEEECCCCHHHHHHHHhcC-cceEEecCCcHHHHHHHHHHHHH
Confidence 11 1234 44444444433333333444 35799999999888887766553
No 214
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=87.62 E-value=13 Score=36.46 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=73.6
Q ss_pred cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCC
Q 001846 866 DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGS 942 (1006)
Q Consensus 866 DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~ 942 (1006)
|-+..-..++..+|+..||+|... .+.++.++...+ +.+|+|.+--.|... .+.++.+.+.-.+.
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~~~~--~~~~~~~~~~L~~~--------- 80 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLAGGH--LTLVPALRKELDKL--------- 80 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCchhhh--HHHHHHHHHHHHhc---------
Confidence 344445568889999999998853 467788888776 468999886655322 33344443321110
Q ss_pred CcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 943 SVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 943 ~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
...+++|+ +-+....++.++..++|+|+|+..=-+..+..+.+.+.+
T Consensus 81 --------g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 81 --------GRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred --------CCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 01134444 455556677888999999999987778888877777644
No 215
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=87.27 E-value=11 Score=40.14 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=71.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCC-E-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGI-M-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~-~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
++++++|+++.........++.+|. . +..+.+..++...... ..||++++|.++.. .++ .. ....+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--------~~~dlv~lDi~~~~--~~G-~~-~~~~l 69 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--------LKPDVVFLDIQMPR--ISG-LE-LVGML 69 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCC--CCH-HH-HHHHh
Confidence 4789999999999999999999883 3 3456788887766532 36899999987542 221 11 11112
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+.. ..|.+++++.. .. ........ ....++.||+....+..++..+..
T Consensus 70 ~~~----~~~~ii~vt~~-~~-~~~~a~~~-~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 70 DPE----HMPYIVFVTAF-DE-YAIKAFEE-HAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ccc----CCCEEEEEecc-HH-HHHHHHhc-CCcEEEECCCCHHHHHHHHHHHHH
Confidence 111 23455555433 22 12222222 235789999999999888877653
No 216
>PRK09483 response regulator; Provisional
Probab=87.27 E-value=9.7 Score=39.58 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=75.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
.+++++|+++..+......|+.. |+.+. .+.+..++...... .+||++++|.+.... .+..+...+...
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvi~d~~~~~~-~g~~~~~~l~~~ 72 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--------NAVDVVLMDMNMPGI-GGLEATRKILRY 72 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCCC-CHHHHHHHHHHH
Confidence 36899999999999999999875 77765 67888888766543 468999998765321 111121222111
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...+++++...............| .+.++.||.....+..++..++.
T Consensus 73 ~------~~~~ii~ls~~~~~~~~~~~~~~g-~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 73 T------PDVKIIMLTVHTENPLPAKVMQAG-AAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred C------CCCeEEEEeCCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHC
Confidence 1 123455555444444444444444 46799999999999988877664
No 217
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=87.26 E-value=20 Score=32.48 Aligned_cols=120 Identities=22% Similarity=0.294 Sum_probs=72.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
+.++++++++++.........++..|.. +....+..++...... ..+|++++|..... .. + ......
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~di~l~d~~~~~--~~-~-~~~~~~ 71 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--------GGFGFVISDWNMPN--MD-G-LELLKT 71 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--------cCCCEEEEcCCCCC--CC-H-HHHHHH
Confidence 3468899999999999999999999984 6777788777665422 46899998754321 11 1 111222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
++........| ++++...............| .+.++.||+....+...+...+
T Consensus 72 l~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~g-~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 72 IRADGAMSALP-VLMVTAEAKKENIIAAAQAG-ASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred HHhCCCcCCCc-EEEEECCCCHHHHHHHHHhC-CCeEEECCCCHHHHHHHHHHHH
Confidence 22222222334 34444433333333333334 3468899999988887776654
No 218
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=86.88 E-value=5.3 Score=53.79 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=81.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 701 KGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 701 ~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
...++++||+++..+......|+.+|+.+..+.+..++...+.. ..||++++|..+. +.+... .+..+
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--------~~~dlil~D~~mp--~~~g~~--~~~~i 1024 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--------QHYDLLITDVNMP--NMDGFE--LTRKL 1024 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--------CCCCEEEEeCCCC--CCCHHH--HHHHH
Confidence 35689999999999999999999999999999999999877643 4689999987653 222211 11122
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+... ...| +++++..............|. +.++.||+....+...+.+...
T Consensus 1025 ~~~~--~~~p-ii~lt~~~~~~~~~~~~~~G~-~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1025 REQN--SSLP-IWGLTANAQANEREKGLSCGM-NLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred HhcC--CCCC-EEEEECCCCHHHHHHHHHCCC-CEEEeCCCCHHHHHHHHHHHhh
Confidence 2111 1234 444544444444444444453 5799999999999888877653
No 219
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=86.54 E-value=11 Score=39.09 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=75.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
++++++|+++.........++..|..+..+.+..++...... ..||++++|..... .+ +. .....++.
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~d~vild~~~~~--~~-~~-~~~~~i~~ 68 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--------EMYALAVLDINMPG--MD-GL-EVLQRLRK 68 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCC--Cc-HH-HHHHHHHh
Confidence 368899999999998899999999999888888887655432 46899999865432 11 11 11122222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...|. +++...............| .+.++.||.....+.+.+...+.
T Consensus 69 ~~--~~~~i-i~lt~~~~~~~~~~~~~~g-~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 69 RG--QTLPV-LLLTARSAVADRVKGLNVG-ADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred cC--CCCCE-EEEECCCCHHHHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHh
Confidence 11 12343 4444444444433444444 45799999999998888876654
No 220
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=86.49 E-value=12 Score=38.64 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=75.0
Q ss_pred EEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNG 784 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 784 (1006)
++++|+++.........++..|+.+..+.+..++...+.. ..||++++|..... .+. ...+..++...
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvl~d~~~~~--~~g--~~~~~~l~~~~ 68 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--------DDYDLIILDVMLPG--MDG--WQILQTLRRSG 68 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CCH--HHHHHHHHccC
Confidence 4688999999888888999999999989999888776532 46899999865432 111 11222222211
Q ss_pred CcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 785 HVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 785 ~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
...| +++++..............| .+.++.||.....+...+...+.
T Consensus 69 --~~~~-iivls~~~~~~~~~~~~~~G-a~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 69 --KQTP-VLFLTARDSVADKVKGLDLG-ADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred --CCCc-EEEEEcCCCHHHHHHHHHcC-CCeEEECCCCHHHHHHHHHHHhc
Confidence 1234 44454444444444444444 45799999999998888877654
No 221
>PRK14084 two-component response regulator; Provisional
Probab=86.34 E-value=11 Score=40.50 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=72.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcC-C-EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCc-chhHhhhh
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLG-I-MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDS-GFNAQLLD 779 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G-~-~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~-~~~~~~~~ 779 (1006)
++++++|+++.........++.++ + .+..+.+..++...... ..||++++|.++. +.++ .....+..
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--------~~~dlv~lDi~m~--~~~G~~~~~~i~~ 70 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--------NQYDIIFLDINLM--DESGIELAAKIQK 70 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--------cCCCEEEEeCCCC--CCCHHHHHHHHHh
Confidence 468999999999999999999876 3 46677888888776543 3689999987754 2221 22222221
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
. . ..+.++.++.. ... .......+ ...++.||+....+.+++..+.
T Consensus 71 ~---~---~~~~iI~~t~~-~~~-~~~~~~~~-~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 71 M---K---EPPAIIFATAH-DQF-AVKAFELN-ATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred c---C---CCCEEEEEecC-hHH-HHHHHhcC-CcEEEECCCCHHHHHHHHHHHH
Confidence 1 1 23444444433 222 22222223 4579999999999998887765
No 222
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=86.06 E-value=19 Score=37.99 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=76.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++|+++.........++..|+.+..+.+..++...+.. ..||++++|...... + +. .....++.
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------~~~dlvl~d~~~~~~--~-g~-~~~~~l~~ 78 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--------TPPDLILLDLMLPGT--D-GL-TLCREIRR 78 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCCC--C-HH-HHHHHHHh
Confidence 379999999999999999999999999888898888776532 468999998764321 1 11 11222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...| ++++...............| .+.++.||.....+...+...+.
T Consensus 79 ~---~~~p-ii~l~~~~~~~~~~~~~~~g-a~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 79 F---SDIP-IVMVTAKIEEIDRLLGLEIG-ADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred c---CCCC-EEEEEcCCCHHHHHHHHhcC-CCeEEECCCCHHHHHHHHHHHHh
Confidence 1 1344 44444444433333334444 35789999999988887776654
No 223
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=86.01 E-value=14 Score=39.20 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=77.1
Q ss_pred eEEEEcCchhHHHHHHHHHHHcC-CEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcc-hhHhhhhc
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLG-IMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSG-FNAQLLDW 780 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G-~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~-~~~~~~~~ 780 (1006)
+++++||.+..+.-.+..|+..+ +.+. .+.+..++..... ..+||++++|..++ +.++- ....+.+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~--------~~~pdvvl~Dl~mP--~~~G~e~~~~l~~~ 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR--------ELKPDVVLLDLSMP--GMDGLEALKQLRAR 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh--------hcCCCEEEEcCCCC--CCChHHHHHHHHHH
Confidence 68999999999999999998877 6644 4455777776533 36899999996543 32222 12222211
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
. ...++++++..............|. +.++.|......+..+++.+..
T Consensus 72 ~------p~~~vvvlt~~~~~~~v~~al~~Ga-~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 72 G------PDIKVVVLTAHDDPAYVIRALRAGA-DGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred C------CCCcEEEEeccCCHHHHHHHHHcCC-CEEEeCCCCHHHHHHHHHHHHC
Confidence 1 1125666666666666655555553 6889999999999999988764
No 224
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=86.00 E-value=14 Score=39.71 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=73.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHc-CCEE-EEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRL-GIMV-KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~-G~~v-~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
++++++|+++..+......|... |+.+ ..+++..++....... ...||++++|..+... .+......+..
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~DlvilD~~~p~~-~G~eli~~l~~- 73 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS------DTPIDLILLDIYMQQE-NGLDLLPVLHE- 73 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc------CCCCCEEEEecCCCCC-CcHHHHHHHHh-
Confidence 47899999999999888888864 6654 4667777777655321 2468999998765321 11122222221
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHh
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQV 833 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~ 833 (1006)
.. .. .++++++..............|. +.++.||.....+..++...
T Consensus 74 --~~--~~-~~vI~ls~~~~~~~~~~al~~Ga-~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 74 --AG--CK-SDVIVISSAADAATIKDSLHYGV-VDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred --hC--CC-CCEEEEECCCcHHHHHHHHHcCC-CEEEeCCCCHHHHHHHHHHH
Confidence 11 12 33455555444444444444553 57999999999988888654
No 225
>PTZ00130 heat shock protein 90; Provisional
Probab=85.35 E-value=1 Score=56.43 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=29.0
Q ss_pred EEEEEecCCCCChhHHhhhccc--------cc---cCCCCCCCCCCCccccHHHHHHHH
Q 001846 605 MVCVEDTGIGIPLSAQERVFMP--------FM---QADSSTSRHYGGTGIGLSISKCLV 652 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~~~s~s~~~gGtGLGLsI~k~Lv 652 (1006)
.++|+|||+||+.+++..-+-. |. +.......-.|-.|+|..=|-.+.
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 4789999999999886543311 21 111112234577899987664443
No 226
>PRK09191 two-component response regulator; Provisional
Probab=85.22 E-value=8.7 Score=41.60 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=72.3
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
.+++++|+++.........++..|+.+. .+.+..++...... ..+|++++|.+.... .+ +. ..+..++
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--------~~~dlvi~d~~~~~~-~~-g~-e~l~~l~ 206 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--------TRPGLILADIQLADG-SS-GI-DAVNDIL 206 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--------cCCCEEEEecCCCCC-CC-HH-HHHHHHH
Confidence 4689999999999999999999999887 67787877766532 468999999765311 11 11 1122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ..|.+ +++..... .. .....+ ...++.||+....+...+.+.+.
T Consensus 207 ~~~---~~pii-~ls~~~~~-~~-~~~~~~-~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 207 KTF---DVPVI-FITAFPER-LL-TGERPE-PAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred HhC---CCCEE-EEeCCCcH-HH-HHHhcc-cCceEECCCCHHHHHHHHHHHHh
Confidence 211 34443 44332222 11 112222 34679999999999998877653
No 227
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=85.18 E-value=0.94 Score=55.78 Aligned_cols=48 Identities=29% Similarity=0.511 Sum_probs=28.6
Q ss_pred EEEEEecCCCCChhHHh--------hhccccccC---CCCCCC-CCCCccccHHHHHHHH
Q 001846 605 MVCVEDTGIGIPLSAQE--------RVFMPFMQA---DSSTSR-HYGGTGIGLSISKCLV 652 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~s~-~~gGtGLGLsI~k~Lv 652 (1006)
.|+|.|+|.|||.+..+ -+|...... +....+ ..|--|.||+.+..+.
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 38999999999976543 233333211 111111 2234699999888774
No 228
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=84.90 E-value=11 Score=44.99 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=77.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
..+++++|+++.........++..|+.+..+.+..++...+.. ..+|++++|..+.. .+ ++ ..+..++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--------~~~dlillD~~~p~--~~-g~-~ll~~i~ 71 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--------IHPDVVLMDIRMPE--MD-GI-KALKEMR 71 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-HH-HHHHHHH
Confidence 3579999999999999999999999999999999998876543 46899999876532 11 11 1122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ...|. ++++..............| .+.++.||+....+...+...+.
T Consensus 72 ~~~--~~~pv-I~lt~~~~~~~~~~a~~~G-a~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 72 SHE--TRTPV-ILMTAYAEVETAVEALRCG-AFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred hcC--CCCCE-EEEeCCCCHHHHHHHHHCC-ccEEEecccCHHHHHHHHhhhcc
Confidence 211 13344 4444433333333344444 35689999999888887776553
No 229
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=84.85 E-value=0.83 Score=56.80 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEEEecCCCCChhHHhhhc
Q 001846 605 MVCVEDTGIGIPLSAQERVF 624 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF 624 (1006)
.+.|.|||+||+++++.+-|
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866544
No 230
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=84.82 E-value=3.3 Score=51.71 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=57.0
Q ss_pred eEEEecCc-HHH-----HHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhh
Q 001846 861 KILVVDDN-GVN-----RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934 (1006)
Q Consensus 861 ~ILvVDDn-~~n-----~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~ 934 (1006)
+||+|+++ ..+ .+.+...|++.|++|..+.+..+++...+.....++|+.|.+- . ..++++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK--Y-NLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch--h-hHHHHHHHHHh-----
Confidence 45666555 222 4566778899999999999999999988766668899998522 1 24477777753
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCC
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADV 964 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~ 964 (1006)
...+||+++....
T Consensus 74 -----------------~~~~Pv~~~~~~~ 86 (714)
T PRK15400 74 -----------------NENLPLYAFANTY 86 (714)
T ss_pred -----------------CCCCCEEEEcccc
Confidence 2369999987654
No 231
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=84.81 E-value=1.3 Score=54.92 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.6
Q ss_pred EEEEEecCCCCChhHHhhhccccccCCC
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQADS 632 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~ 632 (1006)
.|.|.|||+||++++++-.+.++...+-
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSKI 81 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSKI 81 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhccccC
Confidence 3899999999999999999999976543
No 232
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=84.47 E-value=28 Score=34.29 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcCCeEEE---eCCHHHHHHHhcCCCCCcEEEEeCCCCCCC--HHHHHHHHHhhhchhhhhhccCCCC
Q 001846 869 GVNRMVAAGALKKFGATVEC---AASAKAALDKLQSPHCFDACFMDIQMPEMD--GFEATRRIRQMESKANEQMMNGGSS 943 (1006)
Q Consensus 869 ~~n~~~l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~md--G~e~~~~IR~~e~~~~~~~~~~~~~ 943 (1006)
..-..++..+|+..||+|.. ..+.++.++...+ +.+|+|-+-..|-..- --++.+++|+..
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~g------------- 80 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAG------------- 80 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCC-------------
Confidence 34456788899999999885 4677888888776 5699999887774221 122333444311
Q ss_pred cCCCcccCCCCCcEEEEecCC--CHHh----HHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 944 VDGTAKRDELHLPILAMTADV--IHAT----FDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 944 ~~~~~~~~~~~~PIIalTa~~--~~~~----~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
...+ .|++-+.. .+++ ..++.++|++......-.++++...|++.++
T Consensus 81 --------l~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 81 --------LEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred --------CCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1123 35555531 2222 3468999999999988889999988888764
No 233
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=84.44 E-value=6.4 Score=37.35 Aligned_cols=117 Identities=18% Similarity=0.288 Sum_probs=81.4
Q ss_pred ccccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHH--HHHHhhhchh
Q 001846 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEAT--RRIRQMESKA 933 (1006)
Q Consensus 856 ~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~--~~IR~~e~~~ 933 (1006)
.+.|++++.||-|.........+|..-|.+|+.-..-.+ + ..+.||.+|+.+-.+--.-...- +-.|..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---- 78 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----L-PPAHYDMMLLGVAVTFRENLTMQHERLAKAL---- 78 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----c-ChhhhceeeecccccccCCchHHHHHHHHHH----
Confidence 457899999999999999999999999999987554332 3 23559999999877654443321 111111
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHH-HHHHHhc
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYR-ELAKFFK 999 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~-~l~~~l~ 999 (1006)
...+--|+++-. ......++..+-|+-+.|.||++...|.. .+..+-.
T Consensus 79 -----------------~mtd~vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptllae~~~ 127 (140)
T COG4999 79 -----------------SMTDFVILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTLLAEFCH 127 (140)
T ss_pred -----------------hhhcceEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHHHHHHhhh
Confidence 011334666543 34556678889999999999999999988 5555544
No 234
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=84.30 E-value=3.6 Score=46.68 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=57.8
Q ss_pred CCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEec
Q 001846 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTA 962 (1006)
Q Consensus 883 G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa 962 (1006)
|.++..+.+..++-..+.. -.+|++|..| +-..++... ..+..+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~-------~~~~~~~~~---------------------p~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWAR---APLVLVDADM-------AEACAAAGL---------------------PRRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhcccc---CCeEEECchh-------hhHHHhccC---------------------CCCCCEEEEeC
Confidence 5667777777766444332 5789998744 112222211 11233555544
Q ss_pred -CCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 963 -DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 963 -~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
..+.+....++++|+.||+.+|++.++|.+.+.++.
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 556888999999999999999999999999998874
No 235
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=83.65 E-value=13 Score=37.92 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=72.4
Q ss_pred eEEEEcCchhHHHHHHHHHHHc-CCE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcC
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRL-GIM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWK 781 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~-G~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 781 (1006)
+++++|+++.........+... ++. +..+++..++...... ..||++++|..... .+ +. ..+..++
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--------~~~dlvi~d~~~~~--~~-g~-~~~~~l~ 70 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--------RGVQVCICDISMPD--IS-GL-ELLSQLP 70 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--------CCCCEEEEeCCCCC--CC-HH-HHHHHHc
Confidence 6899999999988888888754 554 4567888888766532 46899999875422 11 11 1122222
Q ss_pred CCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 782 PNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 782 ~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+ .. ++++++..............| .+.++.||.....+..++..++.
T Consensus 71 ~-----~~-~vi~~s~~~~~~~~~~~~~~g-a~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 71 K-----GM-ATIMLSVHDSPALVEQALNAG-ARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred c-----CC-CEEEEECCCCHHHHHHHHHcC-CcEEEECCCCHHHHHHHHHHHHc
Confidence 1 22 344555444444444444444 46799999999999998887764
No 236
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=83.14 E-value=11 Score=44.79 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=72.5
Q ss_pred EEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCC-CcchhHhhhhcCCC
Q 001846 705 AVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGE-DSGFNAQLLDWKPN 783 (1006)
Q Consensus 705 ~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~-~~~~~~~~~~~~~~ 783 (1006)
++++|+++.........+ .|+.+..+.+..++...+.. ..||++++|..+..... .......+..++..
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--------~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~ 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--------HEPAVVTLDLGLPPDADGASEGLAALQQILAI 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--------CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh
Confidence 478899988888777777 78899999999999887643 46899999876542110 01111112222211
Q ss_pred CCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 784 GHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 784 ~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
....| +++++...+..........| .+.++.||+....+...+...+.
T Consensus 71 --~~~~p-iI~lt~~~~~~~~~~a~~~G-a~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 --APDTK-VIVITGNDDRENAVKAIGLG-AYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred --CCCCC-EEEEecCCCHHHHHHHHHCC-ccEEEeCCCCHHHHHHHHhhhhh
Confidence 12344 44444444444444444455 35789999999998887766553
No 237
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.31 E-value=9.9 Score=41.06 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=66.4
Q ss_pred ecCcHHHHHHHHHHHhhcCCeEE--EeCCHHHHHHHhcCCCCCcEEEEeCCCC---------CC-CHHHHHHHHHhhhch
Q 001846 865 VDDNGVNRMVAAGALKKFGATVE--CAASAKAALDKLQSPHCFDACFMDIQMP---------EM-DGFEATRRIRQMESK 932 (1006)
Q Consensus 865 VDDn~~n~~~l~~~L~~~G~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi~MP---------~m-dG~e~~~~IR~~e~~ 932 (1006)
..|.....+..+.+. +.|+.|. |++|...|-....- .+++| || +. + .+.++.|++.
T Consensus 106 lpd~~~tv~aa~~L~-~~Gf~vlpyc~dd~~~ar~l~~~--G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~--- 173 (248)
T cd04728 106 LPDPIETLKAAEILV-KEGFTVLPYCTDDPVLAKRLEDA--GCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER--- 173 (248)
T ss_pred ccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHc--CCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---
Confidence 344444444444444 5599876 77777777655443 46777 77 22 3 6778888752
Q ss_pred hhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE-----eCCCCHHHHHHHHHH
Q 001846 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV-----SKPFEEENLYRELAK 996 (1006)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~~ 996 (1006)
..+|||+=-.-...++..+|++.|+|+++ +|.-++...-++...
T Consensus 174 --------------------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 174 --------------------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred --------------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHH
Confidence 25899988888899999999999999995 464445554444443
No 238
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=81.34 E-value=10 Score=45.03 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=76.3
Q ss_pred eEEEEcCchhHHHHHHHHHH--HcCCEE-EEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 704 KAVVVDEKPVRAAVTQYHLN--RLGIMV-KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~--~~G~~v-~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
+|++|||.+..++-++..+. .+|+.+ ..+++..+|++.... .+||+++.|-.++ +.++--. ...+
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--------~~pDiviTDI~MP--~mdGLdL--I~~i 70 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--------TQPDIVITDINMP--GMDGLDL--IKAI 70 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--------cCCCEEEEecCCC--CCcHHHH--HHHH
Confidence 68999999999988887765 466655 467888999888765 6899999987654 3333211 1122
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
+.. ......|+++.--.-+-..++..-| ++.+|.||+....|..+|.++.+.
T Consensus 71 ke~---~p~~~~IILSGy~eFeYak~Am~lG-V~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 71 KEQ---SPDTEFIILSGYDEFEYAKKAMKLG-VKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred HHh---CCCceEEEEeccchhHHHHHHHhcC-chhheeCcCCHHHHHHHHHHHHHH
Confidence 221 1234555665433333333333333 457899999999999999887654
No 239
>PRK13557 histidine kinase; Provisional
Probab=81.04 E-value=17 Score=43.65 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+.+++++++++.........++.+|+.+..+.+..++...+.. ...||++++|...............+..
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~~d~vi~d~~~~~~~~~~~~~~~l~~ 485 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-------HPEVDLLFTDLIMPGGMNGVMLAREARR 485 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-------CCCceEEEEeccCCCCCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999888876532 1368999998765421111122222221
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. .. +++++++..............+ ...++.||+....+...+...+.
T Consensus 486 ~~-----~~-~~ii~~~~~~~~~~~~~~~~~g-~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 486 RQ-----PK-IKVLLTTGYAEASIERTDAGGS-EFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred hC-----CC-CcEEEEcCCCchhhhhhhcccc-CCceeeCCCCHHHHHHHHHHHhc
Confidence 11 12 2344444433333333333333 34689999999999988877654
No 240
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.83 E-value=17 Score=38.24 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=66.3
Q ss_pred ceEEEe----cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCC--CHHHHHHHHHhhh
Q 001846 860 KKILVV----DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEM--DGFEATRRIRQME 930 (1006)
Q Consensus 860 ~~ILvV----DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~e 930 (1006)
.+||+. |-+..=..++..+|+..||+|... ...++.++.+.. ..||+|-+-+.|+.. +-.++.+.+|+..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 478877 777777888999999999998753 356677777765 569999999877654 2234445555421
Q ss_pred chhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
...+++|++=-+-... +-+-+.|+|.|-.
T Consensus 162 --------------------~~~~~~i~vGG~~~~~---~~~~~~GaD~~~~ 190 (201)
T cd02070 162 --------------------LRDKVKVMVGGAPVNQ---EFADEIGADGYAE 190 (201)
T ss_pred --------------------CCcCCeEEEECCcCCH---HHHHHcCCcEEEC
Confidence 1124666655544443 2566779999875
No 241
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=80.62 E-value=23 Score=37.41 Aligned_cols=120 Identities=10% Similarity=0.171 Sum_probs=69.9
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCC---EEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGI---MVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~---~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
+.++++|+++..+...+..|+..+. .+..+++..++...... ..||++++|.+.+++..+.. ..+..
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--------~~pDlvLlDl~~~l~~~~g~--~~i~~ 70 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--------LRPSVVFINEDCFIHDASNS--QRIKQ 70 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--------cCCCEEEEeCcccCCCCChH--HHHHH
Confidence 3579999999999999999987653 34567888888766532 46899999955222222221 12222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
++...+ . .+++++............. .+-...++.|+.....+..++..+...
T Consensus 71 i~~~~p--~-~~iivlt~~~~~~~~~~~~-~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 71 IINQHP--N-TLFIVFMAIANIHFDEYLL-VRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred HHHHCC--C-CeEEEEECCCchhHHHHHH-HHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 222111 1 3445554433322111111 111112568999999999998887753
No 242
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=80.62 E-value=33 Score=35.08 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHc-CCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRL-GIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~-G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+++++++++.........++.. ++.+. .+.+..++...... ..||++++|...... ....+...+.
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~dlvild~~l~~~-~g~~~~~~l~- 72 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--------RPVDLIIMDIDLPGT-DGFTFLKRIK- 72 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--------cCCCEEEEeCCCCCC-CHHHHHHHHH-
Confidence 357899999999998888888877 57664 56777777665432 468999998764321 1111222222
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
... ...| ++++...............| .+.++.||.....+..++...+.
T Consensus 73 --~~~--~~~~-ii~ls~~~~~~~~~~~~~~g-~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 73 --QIQ--STVK-VLFLSSKSECFYAGRAIQAG-ANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred --HhC--CCCc-EEEEECCCcHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHc
Confidence 111 1233 44444443333333333444 45789999999999988877654
No 243
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=79.77 E-value=26 Score=35.34 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=73.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.+++++++++.........+...|+.+..+.+..++..... ...+|++++|...... ...... ..++.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------~~~~d~ii~d~~~~~~-~~~~~~---~~l~~ 71 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP--------GLRFGCVVTDVRMPGI-DGIELL---RRLKA 71 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc--------cCCCCEEEEeCCCCCC-cHHHHH---HHHHh
Confidence 57899999999999999999999999988888887765543 2468999998654211 111111 12221
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
.. ...| ++++...............| ...++.||.....+...+...+.
T Consensus 72 ~~--~~~~-ii~l~~~~~~~~~~~~~~~g-~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 72 RG--SPLP-VIVMTGHGDVPLAVEAMKLG-AVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred cC--CCCC-EEEEECCCCHHHHHHHHHcC-hHHHhhCCCCHHHHHHHHHHHHH
Confidence 11 1234 44444443333333333333 34588999998888877766553
No 244
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.76 E-value=46 Score=32.51 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhcCCeEEE---eCCHHHHHHHhcCCCCCcEEEEeCCCCCC-CH-HHHHHHHHhhhchhhhhhccCCCC
Q 001846 869 GVNRMVAAGALKKFGATVEC---AASAKAALDKLQSPHCFDACFMDIQMPEM-DG-FEATRRIRQMESKANEQMMNGGSS 943 (1006)
Q Consensus 869 ~~n~~~l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG-~e~~~~IR~~e~~~~~~~~~~~~~ 943 (1006)
..-..++..+|+..||+|.- ..+.++.++...+ +.+|+|.+-..|... .. -++.+.+|+..
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~g------------- 78 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAG------------- 78 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCC-------------
Confidence 34456788899999999874 4567777887766 569999988777543 22 23444444310
Q ss_pred cCCCcccCCCCCcEEEEecCC--C----HHhHHHHHHCCCCEEEeCCCCHHHHHHHHH
Q 001846 944 VDGTAKRDELHLPILAMTADV--I----HATFDECLKCGMDGYVSKPFEEENLYRELA 995 (1006)
Q Consensus 944 ~~~~~~~~~~~~PIIalTa~~--~----~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 995 (1006)
...+||+ +-+.. . .++..+..++|++......-+++++...|+
T Consensus 79 --------l~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 79 --------LKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred --------CCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1134544 44432 2 344567899999999988888888877665
No 245
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=79.75 E-value=6.6 Score=50.90 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=42.1
Q ss_pred CCCCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccC
Q 001846 697 PPGFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKD 763 (1006)
Q Consensus 697 ~~~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~ 763 (1006)
+..+.|.+++++|+++..+.+....|++||+.|..+.+.. ....+|+++.|.+
T Consensus 684 ~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~--------------~~~~~Dlvl~D~~ 736 (894)
T PRK10618 684 EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL--------------ISQEYDIFLTDNP 736 (894)
T ss_pred cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc--------------cCCCCCEEEECCC
Confidence 3456889999999999999999999999999998776421 1245888888743
No 246
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=78.42 E-value=1.5 Score=54.98 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=24.7
Q ss_pred CceEEecH---HHHHHHHHHHHHHHhccCCCC---eEEEEEE
Q 001846 488 PEFVLGDP---GRFRQIITNLVGNSVKFTERG---HIFVKVH 523 (1006)
Q Consensus 488 p~~v~gD~---~rl~QIl~NLl~NAiKfT~~G---~I~v~v~ 523 (1006)
|.+.+|+- .-|.+++.-||.|||.-.-.| .|.|.++
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~ 66 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIH 66 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEc
Confidence 66666754 458999999999999833334 4655553
No 247
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=78.01 E-value=20 Score=38.28 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=67.2
Q ss_pred ceEEEe----cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCC-C-HHHHHHHHHhhh
Q 001846 860 KKILVV----DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEM-D-GFEATRRIRQME 930 (1006)
Q Consensus 860 ~~ILvV----DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m-d-G~e~~~~IR~~e 930 (1006)
.+|++. |.+..=..++..+|+..||+|... ...++.++.+.+ ..+|+|.+-..|+.. . --++++++|+.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-HKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 478877 777777888899999999999864 346667777765 569999999888643 1 12334444431
Q ss_pred chhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHH---HHHCCCCEEEeC
Q 001846 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE---CLKCGMDGYVSK 983 (1006)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~---~~~aG~d~yl~K 983 (1006)
..+++|++=-+-.+++..++ |-..|+|.|-.-
T Consensus 167 ---------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 167 ---------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred ---------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 22577776655555444332 345799998653
No 248
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=77.60 E-value=12 Score=35.46 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeC-CCCCCC-HHHHHHHHHhhhchhhhhhccCCCC
Q 001846 869 GVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDI-QMPEMD-GFEATRRIRQMESKANEQMMNGGSS 943 (1006)
Q Consensus 869 ~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi-~MP~md-G~e~~~~IR~~e~~~~~~~~~~~~~ 943 (1006)
+.-...+..+|++.|++|... .+.++..+.+.. ..||+|.+.. ..+... ..++++.+|+
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~--------------- 77 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKE--------------- 77 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHh---------------
Confidence 456778999999999999765 345666666665 4699999988 443332 2334444443
Q ss_pred cCCCcccCCCCCcEEEEecCCCHHhHHHHHH--CCCCEEEeCC
Q 001846 944 VDGTAKRDELHLPILAMTADVIHATFDECLK--CGMDGYVSKP 984 (1006)
Q Consensus 944 ~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~--aG~d~yl~KP 984 (1006)
..++++|++ -+.......+.+++ .|+|..+.-.
T Consensus 78 -------~~p~~~iv~-GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 78 -------RNPNIPIVV-GGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp -------TCTTSEEEE-EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred -------cCCCCEEEE-ECCchhcChHHHhccCcCcceecCCC
Confidence 123455554 44444445566665 7888777543
No 249
>PRK00208 thiG thiazole synthase; Reviewed
Probab=76.65 E-value=21 Score=38.64 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHHHhhcCCeEE--EeCCHHHHHHHhcCCCCCcEEEEeCCCC---------CC-CHHHHHHHHHhhhchhh
Q 001846 867 DNGVNRMVAAGALKKFGATVE--CAASAKAALDKLQSPHCFDACFMDIQMP---------EM-DGFEATRRIRQMESKAN 934 (1006)
Q Consensus 867 Dn~~n~~~l~~~L~~~G~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi~MP---------~m-dG~e~~~~IR~~e~~~~ 934 (1006)
|.....+..+. |-+.|+.|. |++|...|-....- .+|+| || +. + .+.++.|++.
T Consensus 108 d~~~tv~aa~~-L~~~Gf~vlpyc~~d~~~ak~l~~~--G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~----- 173 (250)
T PRK00208 108 DPIETLKAAEI-LVKEGFVVLPYCTDDPVLAKRLEEA--GCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ----- 173 (250)
T ss_pred CHHHHHHHHHH-HHHCCCEEEEEeCCCHHHHHHHHHc--CCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh-----
Confidence 33344444444 445699876 77788877655443 46777 77 11 3 6777777752
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE-----eCCCCHHHHHHHHHH
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV-----SKPFEEENLYRELAK 996 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~~ 996 (1006)
..+|||+=-.-...++..+|++.|+|+.+ +|.-++...-++...
T Consensus 174 ------------------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 174 ------------------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred ------------------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 25899988888899999999999999995 463445554444443
No 250
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=74.08 E-value=43 Score=28.60 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=63.8
Q ss_pred EEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCCCCCc
Q 001846 707 VVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKPNGHV 786 (1006)
Q Consensus 707 vvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1006)
++++++.........+..+|+.+..+.+..++...... ..+++++++...... ........+ +.. .
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ii~~~~~~~~-~~~~~~~~l---~~~--~ 67 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--------EKPDLILLDIMMPGM-DGLELLRRI---RKR--G 67 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--------CCCCEEEEecCCCCC-chHHHHHHH---HHh--C
Confidence 56778888888888888899999888888887766532 368999988654321 111111111 111 1
Q ss_pred CCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHH
Q 001846 787 FKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQ 832 (1006)
Q Consensus 787 ~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~ 832 (1006)
...| .+++...............+ ...++.+|.....+...+..
T Consensus 68 ~~~~-~i~~~~~~~~~~~~~~~~~~-~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 68 PDIP-IIFLTAHGDDEDAVEALKAG-ADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred CCCC-EEEEEecccHHHHHHHHHcC-hhhHccCCCCHHHHHHHHHh
Confidence 1233 33343332222222333333 34578899988887777654
No 251
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=73.97 E-value=3.6 Score=49.88 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=28.2
Q ss_pred EEEEEecCCCCChhHHhhh------------ccccccCCCCCCCCCCCccccHHHHHHHH
Q 001846 605 MVCVEDTGIGIPLSAQERV------------FMPFMQADSSTSRHYGGTGIGLSISKCLV 652 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~i------------F~pF~q~~~s~s~~~gGtGLGLsI~k~Lv 652 (1006)
.++|+||||||+.++...- ++...+.. ..+.=-|-.|+|++=|--.+
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~-~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQ-KDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhcccc-ccccccccccchhhheeeee
Confidence 4889999999998875432 12222111 11223467899988665444
No 252
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=72.01 E-value=21 Score=37.07 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHHHcCCEEEE-eCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhh
Q 001846 700 FKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKM-SSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778 (1006)
Q Consensus 700 ~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~-~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~ 778 (1006)
...++++++++.+..+......|...|+.+.- +.+...+.... ...+||+|++|-++..... ...+.
T Consensus 3 ~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~--------~~~~pDvVildie~p~rd~----~e~~~ 70 (194)
T COG3707 3 AMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC--------ERLQPDVVILDIEMPRRDI----IEALL 70 (194)
T ss_pred ccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH--------HhcCCCEEEEecCCCCccH----HHHHH
Confidence 34578999999999999999999888887643 33333332222 2368999999987654331 11111
Q ss_pred hcCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 779 DWKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 779 ~~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
...+ .. -+.++++...-.+.........|- ..++.||+....+...|.-..
T Consensus 71 ~~~~---~~-~~piv~lt~~s~p~~i~~a~~~Gv-~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 71 LASE---NV-ARPIVALTAYSDPALIEAAIEAGV-MAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred Hhhc---CC-CCCEEEEEccCChHHHHHHHHcCC-eEEEecCcchhhhhHHHHHHH
Confidence 1111 11 233445554445555555555553 589999999888776664433
No 253
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=71.19 E-value=67 Score=32.42 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcC-CE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLG-IM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G-~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+++++++++.........+..++ +. +..+.+..++...... ..||++++|..... .+ +. ..+..
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~dlvl~d~~~~~--~~-~~-~~~~~ 70 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--------LEPDIVILDLGLPG--MN-GL-DVIPQ 70 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--------cCCCEEEEeCCCCC--CC-HH-HHHHH
Confidence 4678999999999999998888764 44 3466777777655432 46899999865421 11 11 11112
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
++... ...++++++..............| .+.++.||.....+...+...+.
T Consensus 71 l~~~~---~~~~ii~ls~~~~~~~~~~~~~~g-~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 71 LHQRW---PAMNILVLTARQEEHMASRTLAAG-ALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred HHHHC---CCCcEEEEeCCCCHHHHHHHHHhC-CCEEEeCCCCHHHHHHHHHHHHC
Confidence 22111 123445555444444444444444 45789999999988888876653
No 254
>PRK10651 transcriptional regulator NarL; Provisional
Probab=69.49 E-value=90 Score=31.87 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHc-CCE-EEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhh
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRL-GIM-VKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLD 779 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~-G~~-v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~ 779 (1006)
..+++++++++.........+... ++. +..+.+..++...... ..||++++|...... ....... .
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~dlvl~d~~l~~~-~~~~~~~---~ 73 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--------LDPDLILLDLNMPGM-NGLETLD---K 73 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--------CCCCEEEEeCCCCCC-cHHHHHH---H
Confidence 357899999999998888888775 454 3457788887766532 468999998654321 1111111 1
Q ss_pred cCCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 780 WKPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 780 ~~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
++... ...| ++++...............| .+.++.||.....+...+..++.
T Consensus 74 l~~~~--~~~~-vi~l~~~~~~~~~~~~~~~g-~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 74 LREKS--LSGR-IVVFSVSNHEEDVVTALKRG-ADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred HHHhC--CCCc-EEEEeCCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHC
Confidence 22111 1223 44444444444433343444 45789999999999988887764
No 255
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.26 E-value=1.2e+02 Score=30.32 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=78.7
Q ss_pred ceEEEe----cCcHHHHHHHHHHHhhcCCeEEE---eCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhch
Q 001846 860 KKILVV----DDNGVNRMVAAGALKKFGATVEC---AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESK 932 (1006)
Q Consensus 860 ~~ILvV----DDn~~n~~~l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~ 932 (1006)
+||||. |-+..-.+++...|+..|++|+. ..+.+|++....+ +..|+|.+-.. .-...+++..+++.-.+
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-~dv~vIgvSsl--~g~h~~l~~~lve~lre 89 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-EDVDVIGVSSL--DGGHLTLVPGLVEALRE 89 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-cCCCEEEEEec--cchHHHHHHHHHHHHHH
Confidence 356554 66666678999999999999985 6788999988754 45788876542 33445666666654332
Q ss_pred hhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
.. ..++. +.+-+.-..++..+..+.|++.++.-=....+..+.+..-+
T Consensus 90 ~G-----------------~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 90 AG-----------------VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred hC-----------------CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 11 11233 35556666777888889999999986566666555554443
No 256
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=68.03 E-value=39 Score=42.64 Aligned_cols=111 Identities=8% Similarity=0.064 Sum_probs=75.0
Q ss_pred CcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCC--CHHHHHHHHHhhhchhhhhhccCC
Q 001846 867 DNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEM--DGFEATRRIRQMESKANEQMMNGG 941 (1006)
Q Consensus 867 Dn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~e~~~~~~~~~~~ 941 (1006)
.+..-...+..+|+..|++|+.- .+.+++++.... ..+|+|.+-..+... ..-++++.||+..
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~-~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G----------- 661 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE-NDVHVVGVSSLAAGHKTLVPALIEALKKLG----------- 661 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH-cCCCEEEEeccchhhHHHHHHHHHHHHhcC-----------
Confidence 34444567888999999999643 357788887765 458888876555332 2345666666521
Q ss_pred CCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 942 SSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 942 ~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+++|+ +-+...+++.+.+.++|+|+|+..=.+..+....+.+.+..
T Consensus 662 ----------~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 662 ----------REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLSA 709 (714)
T ss_pred ----------CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 1123333 45554556667889999999999888988888888877643
No 257
>PLN03237 DNA topoisomerase 2; Provisional
Probab=67.92 E-value=7.4 Score=51.88 Aligned_cols=53 Identities=17% Similarity=0.424 Sum_probs=32.2
Q ss_pred EEEEecCCCCChhHHh--------hhccccccCCC---CCCCCCCC-ccccHHHHHHHHHHhCCE
Q 001846 606 VCVEDTGIGIPLSAQE--------RVFMPFMQADS---STSRHYGG-TGIGLSISKCLVELMRGQ 658 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~--------~iF~pF~q~~~---s~s~~~gG-tGLGLsI~k~Lv~lmgG~ 658 (1006)
|+|.|+|.|||-+.++ -||.-...+.. ...+-.|| .|.|.+.|.-|-+.+--+
T Consensus 113 IsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Ve 177 (1465)
T PLN03237 113 ISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIE 177 (1465)
T ss_pred EEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEE
Confidence 8999999999987543 24443332221 11112233 699999988877655433
No 258
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=66.03 E-value=2e+02 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=19.7
Q ss_pred HhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccC
Q 001846 473 RNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFT 513 (1006)
Q Consensus 473 ~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT 513 (1006)
...|....+...-+++. ....+|...|.+.++..+.++
T Consensus 173 ~~~~~~~~v~sa~~l~~---~~~~~i~~~l~~~~~~~v~~~ 210 (246)
T TIGR03321 173 ADSGNPVLVRSAFELPE---EQREQIRDTIRETLGPEIRLR 210 (246)
T ss_pred hCCCCceEEEecCCCCH---HHHHHHHHHHHHHHCCCeeEE
Confidence 34554544433322221 345677777777776555443
No 259
>PRK10403 transcriptional regulator NarP; Provisional
Probab=65.89 E-value=1e+02 Score=31.40 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=70.1
Q ss_pred CeEEEEcCchhHHHHHHHHHHH-cCCEEE-EeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNR-LGIMVK-MSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~-~G~~v~-~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
.+++++++++.........++. .++.+. .+.+..++...... ..||++++|...... ..... +..+
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~dlvi~d~~~~~~-~~~~~---~~~l 74 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--------LDPDVILLDLNMKGM-SGLDT---LNAL 74 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--------cCCCEEEEecCCCCC-cHHHH---HHHH
Confidence 5789999999888888888875 567664 57787777765432 468999998764321 11111 1122
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhh
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVL 834 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l 834 (1006)
+... ...| ++++...............| .+.++.||.....+...+...+
T Consensus 75 ~~~~--~~~~-ii~l~~~~~~~~~~~~~~~g-~~~~i~kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 75 RRDG--VTAQ-IIILTVSDASSDVFALIDAG-ADGYLLKDSDPEVLLEAIRAGA 124 (215)
T ss_pred HHhC--CCCe-EEEEeCCCChHHHHHHHHcC-CCeEEecCCCHHHHHHHHHHHh
Confidence 2111 1123 34444333333333333344 4578999999988888887655
No 260
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=65.37 E-value=5.2 Score=49.64 Aligned_cols=50 Identities=28% Similarity=0.502 Sum_probs=29.2
Q ss_pred EEEEecCCCCChhHHh--------hhccccccC---CCCCCCCC-CCccccHHHHHHHHHHh
Q 001846 606 VCVEDTGIGIPLSAQE--------RVFMPFMQA---DSSTSRHY-GGTGIGLSISKCLVELM 655 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~s~~~-gGtGLGLsI~k~Lv~lm 655 (1006)
|+|.|+|.|||.+..+ -+|.-.... |.+.-+-. |-.|.|++.|.-|-+.+
T Consensus 68 itV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 68 ITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred EEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 8999999999976433 233221111 11111112 33699999988877643
No 261
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=63.04 E-value=5 Score=49.43 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=30.5
Q ss_pred EEEEecCCCCChhHHhh-----------hccccccC---CCCCCCCCCCccccHHHHHHHHHHh
Q 001846 606 VCVEDTGIGIPLSAQER-----------VFMPFMQA---DSSTSRHYGGTGIGLSISKCLVELM 655 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~~-----------iF~pF~q~---~~s~s~~~gGtGLGLsI~k~Lv~lm 655 (1006)
|+|.|+|.|||-+.... +|.-...+ +.+-.-..|-.|.|.+.|.-|-+.+
T Consensus 81 isV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 89999999999875521 23222111 1111122345899999998877655
No 262
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=62.96 E-value=1.1e+02 Score=31.96 Aligned_cols=93 Identities=24% Similarity=0.247 Sum_probs=60.8
Q ss_pred hcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCC--------CHHHHHHHHHhhhchhhhhhccCCCCcCCCcccC
Q 001846 881 KFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPEM--------DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRD 951 (1006)
Q Consensus 881 ~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~m--------dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~ 951 (1006)
..|..+. .+.+-.++.+.... ..|.|...--.|.. .|++.++++++.-
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~~~--gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------- 158 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAALAA--GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--------------------- 158 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHhHc--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc---------------------
Confidence 3444443 34566677666543 48999877555533 4688888887631
Q ss_pred CCCCcEEEEecCCCHHhHHHHHHCCCCEEEe-----CCCCHHHHHHHHHHHh
Q 001846 952 ELHLPILAMTADVIHATFDECLKCGMDGYVS-----KPFEEENLYRELAKFF 998 (1006)
Q Consensus 952 ~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~~l 998 (1006)
.++||++.-+- ..+...+++++|++++.. +.-++.+..+.+.+.+
T Consensus 159 -~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 159 -GDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred -CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHH
Confidence 13888877554 688889999999999974 5445655555554443
No 263
>PRK13558 bacterio-opsin activator; Provisional
Probab=62.70 E-value=64 Score=40.42 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=72.5
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhcCC
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDWKP 782 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 782 (1006)
.++++||+++.........+...|+.+..+.+..++...+.. ..||++++|..+. +.+. ...+..++.
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--------~~~Dlvl~d~~lp--~~~g--~~~l~~l~~ 75 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--------GEIDCVVADHEPD--GFDG--LALLEAVRQ 75 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--------cCCCEEEEeccCC--CCcH--HHHHHHHHh
Confidence 689999999999998888899999999999999888876532 4689999987653 2221 122222222
Q ss_pred CCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHH--HHHHHHHHhh
Q 001846 783 NGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRAS--MIAACLQQVL 834 (1006)
Q Consensus 783 ~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~--~l~~~l~~~l 834 (1006)
.. ...| ++++...............|. ..++.||.... .+...+...+
T Consensus 76 ~~--~~~p-iI~lt~~~~~~~~~~al~~Ga-~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 76 TT--AVPP-VVVVPTAGDEAVARRAVDADA-AAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred cC--CCCC-EEEEECCCCHHHHHHHHhcCc-ceEEeccchhHHHHHHHHHHHhh
Confidence 11 2344 445544444444444444453 45788886533 4444444443
No 264
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=61.72 E-value=67 Score=33.76 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=61.0
Q ss_pred eEEEe----cCcHHHHHHHHHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCH--HHHHHHHHhhhc
Q 001846 861 KILVV----DDNGVNRMVAAGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMDG--FEATRRIRQMES 931 (1006)
Q Consensus 861 ~ILvV----DDn~~n~~~l~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~e~ 931 (1006)
+||+. |.+..-..++..+|+..||+|... ...++.++.+.. ..||+|.+-+.|+..-. .++.+++|+..
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~- 163 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-EKPLMLTGSALMTTTMYGQKDINDKLKEEG- 163 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEccccccCHHHHHHHHHHHHHcC-
Confidence 55543 345556778888999999999853 455667777765 56999999887765422 33444444321
Q ss_pred hhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
...+++|++ -+.... .+-|.+.|+|.|-.
T Consensus 164 -------------------~~~~v~i~v-GG~~~~--~~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 -------------------YRDSVKFMV-GGAPVT--QDWADKIGADVYGE 192 (197)
T ss_pred -------------------CCCCCEEEE-EChhcC--HHHHHHhCCcEEeC
Confidence 112355554 443332 24567889999964
No 265
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=61.01 E-value=15 Score=38.22 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=44.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe---EEEeCCHHHHHHHh-cCCCCCcEEEEeCCCCCCCH---HHHHHHHH
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT---VECAASAKAALDKL-QSPHCFDACFMDIQMPEMDG---FEATRRIR 927 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~---v~~a~~g~eAl~~l-~~~~~~DlIlmDi~MP~mdG---~e~~~~IR 927 (1006)
.++..||-|+.....++.-+++.|.. .....|...++... .....||+||+|- |-..+ .+++..|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 58999999999999999999988843 34566777777665 2346799999994 44433 34566654
No 266
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=59.49 E-value=1.6e+02 Score=32.48 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcCCeE-EEeCCHHHHHHHhcCCCCCcEEEEe---CCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCC
Q 001846 871 NRMVAAGALKKFGATV-ECAASAKAALDKLQSPHCFDACFMD---IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDG 946 (1006)
Q Consensus 871 n~~~l~~~L~~~G~~v-~~a~~g~eAl~~l~~~~~~DlIlmD---i~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~ 946 (1006)
....+....+.+|..+ ..+.|.+|+...... .+|+|-.. ++--..| ++.+.++...-+
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~--gadiIgin~rdl~~~~~d-~~~~~~l~~~~p--------------- 209 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERALKL--GAPLIGINNRNLKTFEVD-LETTERLAPLIP--------------- 209 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc--CCCEEEECCCCcccccCC-HHHHHHHHHhCC---------------
Confidence 3444444456678874 468888888665543 47877542 2222334 667777765211
Q ss_pred CcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE-----eCCCCHHHH
Q 001846 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYV-----SKPFEEENL 990 (1006)
Q Consensus 947 ~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L 990 (1006)
...|+|+.++-.+.++..++.++|+|+++ .||=++.+.
T Consensus 210 ------~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~ 252 (260)
T PRK00278 210 ------SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAA 252 (260)
T ss_pred ------CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 13589999999999999999999999985 455554443
No 267
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=58.70 E-value=92 Score=33.28 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=48.4
Q ss_pred CHHHHHHHhcCCCCCc-EEEEeCCCCCC-CH--HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCH
Q 001846 891 SAKAALDKLQSPHCFD-ACFMDIQMPEM-DG--FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966 (1006)
Q Consensus 891 ~g~eAl~~l~~~~~~D-lIlmDi~MP~m-dG--~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~ 966 (1006)
+..+.++.+.. ...| ++++|+.--++ .| +++++++++. .++||++-..-.+.
T Consensus 146 ~~~~~~~~~~~-~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvia~GGi~~~ 201 (230)
T TIGR00007 146 SLEELAKRLEE-LGLEGIIYTDISRDGTLSGPNFELTKELVKA-----------------------VNVPVIASGGVSSI 201 (230)
T ss_pred CHHHHHHHHHh-CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCH
Confidence 33445555554 3467 77788854332 12 6778888752 25899999988999
Q ss_pred HhHHHHHHCCCCEEEe
Q 001846 967 ATFDECLKCGMDGYVS 982 (1006)
Q Consensus 967 ~~~~~~~~aG~d~yl~ 982 (1006)
++..++++.|+|+++.
T Consensus 202 ~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 202 DDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999875
No 268
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=58.33 E-value=92 Score=29.05 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCH-HHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASA-KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g-~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
.++.++|.|+..... +...|+.+...+-. .+.++.+.- ...+.++....-+ ..-+.++..+|++.
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~~~~d-~~n~~~~~~~r~~~-------- 87 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI-EKADAVVILTDDD-EENLLIALLARELN-------- 87 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG-GCESEEEEESSSH-HHHHHHHHHHHHHT--------
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc-cccCEEEEccCCH-HHHHHHHHHHHHHC--------
Confidence 379999999887443 35567877765544 334555543 3578888877533 44567788888643
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
+..+|++... +.+......++|+|..+.
T Consensus 88 --------------~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 88 --------------PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp --------------TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred --------------CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 2467887765 355566778899998764
No 269
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=57.51 E-value=66 Score=23.06 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=39.4
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEcc
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK 762 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~ 762 (1006)
+++++++++.........+...|+.+....+...+...... ..++++++|.
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vi~~~ 52 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--------EKPDLILLDI 52 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--------cCCCEEEEec
Confidence 57888999888888888889999998888888877765432 2577777764
No 270
>PRK15029 arginine decarboxylase; Provisional
Probab=56.12 E-value=49 Score=42.00 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=46.3
Q ss_pred CeEEEEcCchh--------HHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCc
Q 001846 703 LKAVVVDEKPV--------RAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDC 764 (1006)
Q Consensus 703 ~r~lvvd~~~~--------~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~ 764 (1006)
+++|+||++.. ........|+..|+.|..+.+..++...+.. ...+|++++|-..
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~-------~~~~DlVLLD~~L 63 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS-------NEAIDCLMFSYQM 63 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-------cCCCcEEEEECCC
Confidence 46899999985 5788899999999999999999999988743 1368999999664
No 271
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.80 E-value=33 Score=37.71 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=34.8
Q ss_pred CCCcEEEEec------CCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 953 LHLPILAMTA------DVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 953 ~~~PIIalTa------~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
.++|+++||= +..+...++|.++|+|+.|.-.+..++....+..+
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3689999993 34556788999999999999778887776666554
No 272
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=55.79 E-value=86 Score=33.35 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHhh-cCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCC-------CCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCc
Q 001846 878 ALKK-FGATVE-CAASAKAALDKLQSPHCFDACFMDIQ-------MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948 (1006)
Q Consensus 878 ~L~~-~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~-------MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~ 948 (1006)
..++ .|..+. .+.+.+++...... .+|+|..... .+...+++++++||+.
T Consensus 113 ~~~~~~~i~vi~~v~t~ee~~~a~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~------------------- 171 (221)
T PRK01130 113 RIKEYPGQLLMADCSTLEEGLAAQKL--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKA------------------- 171 (221)
T ss_pred HHHhCCCCeEEEeCCCHHHHHHHHHc--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-------------------
Confidence 3344 566543 56677887655443 4888754311 1223347888888762
Q ss_pred ccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 949 ~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.++||++..+-.+.++..++++.|+|+++.
T Consensus 172 ----~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 ----VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred ----CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 158999988887899999999999999864
No 273
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=54.69 E-value=1.4e+02 Score=31.91 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHHHcCCEE-EEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhhhc
Q 001846 702 GLKAVVVDEKPVRAAVTQYHLNRLGIMV-KMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLLDW 780 (1006)
Q Consensus 702 g~r~lvvd~~~~~~~~~~~~l~~~G~~v-~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 780 (1006)
..+++++|+.|..+......|+ .++.+ ..+.+..++.... .+||++++|..+.. .+ ++......+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~----------~~~DvvllDi~~p~--~~-G~~~~~~~i 75 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDI----------SSGSIILLDMMEAD--KK-LIHYWQDTL 75 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccC----------CCCCEEEEECCCCC--cc-HHHHHHHHH
Confidence 3468999999999999999997 44433 3445665555321 24899999987642 22 222111111
Q ss_pred CCCCCcCCCCeEEEEecCCChhHHHHHHhCCCCceeecccchHHHHHHHHHHhhc
Q 001846 781 KPNGHVFKLPKLILLATNISKDECDKAKAGGFADTVIMKPLRASMIAACLQQVLS 835 (1006)
Q Consensus 781 ~~~~~~~~~~~~ill~~~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l~~~l~ 835 (1006)
+... ...++++++.... ..........-...++.|+.....+.+++..+..
T Consensus 76 ~~~~---p~~~vvvlt~~~~-~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 76 SRKN---NNIKILLLNTPED-YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred HHhC---CCCcEEEEECCch-hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 1111 1234555554432 2221122111235789999999999999987764
No 274
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=54.33 E-value=37 Score=36.34 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=41.5
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCe--EEEeC--CHHHHHHHhcCCCCCcEEEEeCCCC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGAT--VECAA--SAKAALDKLQSPHCFDACFMDIQMP 915 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~--v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP 915 (1006)
+|.-+|=|+...+.++..+++.|.. +.... +..+.++.. ....||+||+|..=+
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK~ 143 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADKA 143 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCChh
Confidence 7999999999999999999999974 44444 555555542 235799999998643
No 275
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.18 E-value=3.5e+02 Score=30.14 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=47.4
Q ss_pred EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 886 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
-..++|.+|+.+.+.. .+|.|.+|-. |.|-++++.+.. ..++|+.| ++...
T Consensus 193 ~VEv~tleea~eA~~~--gaD~I~LD~~-----~~e~l~~~v~~~---------------------~~~i~leA-sGGIt 243 (277)
T PRK05742 193 EVEVESLDELRQALAA--GADIVMLDEL-----SLDDMREAVRLT---------------------AGRAKLEA-SGGIN 243 (277)
T ss_pred EEEeCCHHHHHHHHHc--CCCEEEECCC-----CHHHHHHHHHHh---------------------CCCCcEEE-ECCCC
Confidence 3457889999888754 4899998842 455566655421 12577665 45677
Q ss_pred HHhHHHHHHCCCCEEEe
Q 001846 966 HATFDECLKCGMDGYVS 982 (1006)
Q Consensus 966 ~~~~~~~~~aG~d~yl~ 982 (1006)
.+...++.++|+|.+-+
T Consensus 244 ~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 244 ESTLRVIAETGVDYISI 260 (277)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88899999999997643
No 276
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=53.72 E-value=79 Score=34.13 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=50.6
Q ss_pred CHHHHHHHhcCCCCCcEEEEeCCCCCCCH---HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHH
Q 001846 891 SAKAALDKLQSPHCFDACFMDIQMPEMDG---FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967 (1006)
Q Consensus 891 ~g~eAl~~l~~~~~~DlIlmDi~MP~mdG---~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~ 967 (1006)
+..+.++.+... .=.++++|+..-++.. ++++++|.+. ..+||++--+-.+.+
T Consensus 147 ~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~-----------------------~~ipvi~~GGi~s~e 202 (233)
T cd04723 147 GPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAAR-----------------------ADIPVIAAGGVRSVE 202 (233)
T ss_pred CHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHh-----------------------cCCCEEEeCCCCCHH
Confidence 356666666653 3359999997654322 5677777642 258999999999999
Q ss_pred hHHHHHHCCCCEEEe
Q 001846 968 TFDECLKCGMDGYVS 982 (1006)
Q Consensus 968 ~~~~~~~aG~d~yl~ 982 (1006)
+..+++++|+++.+.
T Consensus 203 di~~l~~~G~~~viv 217 (233)
T cd04723 203 DLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999875
No 277
>PLN02591 tryptophan synthase
Probab=53.71 E-value=32 Score=37.64 Aligned_cols=44 Identities=20% Similarity=0.146 Sum_probs=34.7
Q ss_pred CCcEEEEecC------CCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 954 HLPILAMTAD------VIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 954 ~~PIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
++|+|.||=. ..+.-..+|.++|+|+.|.-.+..++.......+
T Consensus 78 ~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 78 SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 5899999843 3355678899999999999888888877666554
No 278
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.43 E-value=76 Score=34.33 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=49.5
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCCC-CH--HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhH
Q 001846 893 KAALDKLQSPHCFDACFMDIQMPEM-DG--FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969 (1006)
Q Consensus 893 ~eAl~~l~~~~~~DlIlmDi~MP~m-dG--~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~ 969 (1006)
.+.++.+..-..-.+|++|+..-++ .| +++++++++. .++|||+--.-.+.++.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-----------------------~~ipvi~~GGi~s~edi 207 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-----------------------TTIPVIASGGIRHQQDI 207 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHH
Confidence 5555555442224799999976554 22 6677777652 25899999999999999
Q ss_pred HHHHHCCCCEEEe
Q 001846 970 DECLKCGMDGYVS 982 (1006)
Q Consensus 970 ~~~~~aG~d~yl~ 982 (1006)
.++++.|+++.+.
T Consensus 208 ~~l~~~G~~~viv 220 (234)
T PRK13587 208 QRLASLNVHAAII 220 (234)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999875
No 279
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=52.81 E-value=12 Score=50.16 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=30.9
Q ss_pred EEEEecCCCCChhHHh--------hhccccccCCC---CCCCCCCC-ccccHHHHHHHHHHh
Q 001846 606 VCVEDTGIGIPLSAQE--------RVFMPFMQADS---STSRHYGG-TGIGLSISKCLVELM 655 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~--------~iF~pF~q~~~---s~s~~~gG-tGLGLsI~k~Lv~lm 655 (1006)
|+|.|+|.|||-+..+ -||.-...... ...+-.|| .|.|.+.|.-+-+.+
T Consensus 96 IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 96 ISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred EEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 8999999999986543 24443332221 11112234 699999888776554
No 280
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=51.68 E-value=83 Score=34.98 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=51.2
Q ss_pred EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 886 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
.+.+.+-++|.+.++. .+|+|++| +|+.-+=-++.+.+|+.. .-.+|..++...
T Consensus 192 eVEv~tleea~ea~~~--GaDiI~lD-n~~~e~l~~~v~~l~~~~-----------------------~~~~leasGGI~ 245 (277)
T TIGR01334 192 TVEADTIEQALTVLQA--SPDILQLD-KFTPQQLHHLHERLKFFD-----------------------HIPTLAAAGGIN 245 (277)
T ss_pred EEECCCHHHHHHHHHc--CcCEEEEC-CCCHHHHHHHHHHHhccC-----------------------CCEEEEEECCCC
Confidence 4457899999998864 48999999 455544455555554311 123788899999
Q ss_pred HHhHHHHHHCCCCEEE
Q 001846 966 HATFDECLKCGMDGYV 981 (1006)
Q Consensus 966 ~~~~~~~~~aG~d~yl 981 (1006)
.+...+..+.|+|-+.
T Consensus 246 ~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 246 PENIADYIEAGIDLFI 261 (277)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 9999999999999653
No 281
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=50.64 E-value=2e+02 Score=32.87 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=63.3
Q ss_pred eEEEec----CcHHHHHHHHHHHhhcC-CeEEE--eCCHHHHHHHhcCCCCCcEEEEeC-------C---CC-CCC--HH
Q 001846 861 KILVVD----DNGVNRMVAAGALKKFG-ATVEC--AASAKAALDKLQSPHCFDACFMDI-------Q---MP-EMD--GF 920 (1006)
Q Consensus 861 ~ILvVD----Dn~~n~~~l~~~L~~~G-~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi-------~---MP-~md--G~ 920 (1006)
.++++| +.....+.++.+=+++. ..|.. +.+.++|...... .+|+|..-+ . .. ... ++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a--Gad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA--GADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc--CcCEEEECCCCCcccccccccCCCCCccHH
Confidence 467774 33344455555545554 44443 7789999887754 478876331 1 10 112 56
Q ss_pred HHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 921 e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.+++.+++. .++|||+--+-....+..+|+.+|+|.+..
T Consensus 191 ~ai~~~~~~-----------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 191 AALRWCAKA-----------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 667777641 258999999999999999999999998754
No 282
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=50.22 E-value=93 Score=35.71 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=47.2
Q ss_pred CeEEEEcCchhHHHHHHHHHHHcC--CEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccc
Q 001846 703 LKAVVVDEKPVRAAVTQYHLNRLG--IMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWI 766 (1006)
Q Consensus 703 ~r~lvvd~~~~~~~~~~~~l~~~G--~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~ 766 (1006)
+|+++||+.+..+.+.+..|..-| ..+..+.+..+|...+.. ..||++.+|-.+..
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--------~~PDVi~ld~emp~ 59 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--------LKPDVITLDVEMPV 59 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--------cCCCEEEEeccccc
Confidence 589999999999999999999999 455677888888887664 68999999987643
No 283
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=49.90 E-value=37 Score=35.97 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=42.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCC--eEE-EeCCHHHHHHHhcCC---CCCcEEEEeCC
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGA--TVE-CAASAKAALDKLQSP---HCFDACFMDIQ 913 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~--~v~-~a~~g~eAl~~l~~~---~~~DlIlmDi~ 913 (1006)
-+|.-+|=|+.+..+++..+++.|+ .|. ...++.+.+..+... ..||+||+|..
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 4899999999999999999999886 344 457788888776432 35999999984
No 284
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=49.89 E-value=1.8e+02 Score=30.96 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=53.1
Q ss_pred hhcC-Ce-EEEeCCHHHHHHHhcCCCCCcEEEEeCC-------CCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCccc
Q 001846 880 KKFG-AT-VECAASAKAALDKLQSPHCFDACFMDIQ-------MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKR 950 (1006)
Q Consensus 880 ~~~G-~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~-------MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~ 950 (1006)
++.| .. +..+.+.+++...... .+|.|..-.. .+...+++.++++|+.
T Consensus 119 ~~~g~~~iiv~v~t~~ea~~a~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~--------------------- 175 (219)
T cd04729 119 HEEYNCLLMADISTLEEALNAAKL--GFDIIGTTLSGYTEETAKTEDPDFELLKELRKA--------------------- 175 (219)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHc--CCCEEEccCccccccccCCCCCCHHHHHHHHHh---------------------
Confidence 4444 44 3456778888666543 4888743210 1223357888888852
Q ss_pred CCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 951 DELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 951 ~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.++||++..+-.+.++..++++.|+|+.+.
T Consensus 176 --~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 176 --LGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred --cCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 158999888777899999999999999875
No 285
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=49.71 E-value=1.7e+02 Score=32.10 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=67.0
Q ss_pred HHHHHhhcCCe--EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCC
Q 001846 875 AAGALKKFGAT--VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952 (1006)
Q Consensus 875 l~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~ 952 (1006)
++..|+.-... +.+....-.+.+.+.. ..||.|++|++--.+|--++...||..+.
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------- 67 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGL-AGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------- 67 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh-cCCCEEEEccccCCCCHHHHHHHHHHHhh---------------------
Confidence 55556552222 2223334456666665 35999999999999998888888886432
Q ss_pred CCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCC-CHHHHHHHHHH
Q 001846 953 LHLPILAMTADVIHATFDECLKCGMDGYVSKPF-EEENLYRELAK 996 (1006)
Q Consensus 953 ~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~ 996 (1006)
..++.++=....+.....+++++|+++.+.-=+ +.++..++++.
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 124444445666889999999999999987333 56666665554
No 286
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=49.58 E-value=1.5e+02 Score=28.47 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhcCCeEEEe--CCHHHHHHHhcCCCCCcEEEEeCCCCCC-CHHHHHHHHHhhhchhhhhhccCCCCcCCC
Q 001846 871 NRMVAAGALKKFGATVECA--ASAKAALDKLQSPHCFDACFMDIQMPEM-DGFEATRRIRQMESKANEQMMNGGSSVDGT 947 (1006)
Q Consensus 871 n~~~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~ 947 (1006)
-...+..+|++.|+.+... ..-++.++.+.....||+|.+.+.-+.. ...++++.||+..
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~----------------- 66 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVL----------------- 66 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHC-----------------
Confidence 4567888999999876653 3445556666432469999999855544 3456777777632
Q ss_pred cccCCCCCcEEEEecCCCHHhHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 948 AKRDELHLPILAMTADVIHATFDE-CLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 948 ~~~~~~~~PIIalTa~~~~~~~~~-~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
++++||+--...+. ..+. ....++| |+..==-...+.+.++.+.+.+
T Consensus 67 -----p~~~iv~GG~~~t~-~p~~~~~~~~~D-~vv~GEgE~~~~~l~~~l~~g~ 114 (127)
T cd02068 67 -----PNVIVVVGGPHATF-FPEEILEEPGVD-FVVIGEGEETFLKLLEELEEGE 114 (127)
T ss_pred -----CCCEEEECCcchhh-CHHHHhcCCCCC-EEEECCcHHHHHHHHHHHHcCC
Confidence 24566654444332 2233 3345665 5554333345555555544433
No 287
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=49.20 E-value=2e+02 Score=32.24 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCE------EEeCCCCHHHHHHHHHHHhccCC
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDG------YVSKPFEEENLYRELAKFFKSKP 1002 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~------yl~KP~~~~~L~~~l~~~l~~~~ 1002 (1006)
.+|||+.-.-.+.++..+++.+|+|. ++.+|.-..++.+.|.++++.+-
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999996 57789888888899988887644
No 288
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.65 E-value=1.4e+02 Score=29.03 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001846 337 AFFLFVIGLLVGYILYGAAIHI 358 (1006)
Q Consensus 337 ~~~~~~i~ll~~~~~~~~~~~~ 358 (1006)
+.+.+++|+++|+++.+...+-
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchh
Confidence 3445567777777776655443
No 289
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=47.90 E-value=1.8e+02 Score=31.51 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=46.3
Q ss_pred HHhcCCCCCcEEEEeCCCCCC--CHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHH
Q 001846 897 DKLQSPHCFDACFMDIQMPEM--DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK 974 (1006)
Q Consensus 897 ~~l~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~ 974 (1006)
+.+.. ...|.|-+|...|+- --++.+++|++. ...+|||+.-.-.+.++..++++
T Consensus 155 ~~l~~-aGad~i~Vd~~~~g~~~a~~~~I~~i~~~----------------------~~~ipIIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 155 LNLVD-DGFDGIHVDAMYPGKPYADMDLLKILSEE----------------------FNDKIIIGNNSIDDIESAKEMLK 211 (231)
T ss_pred HHHHH-cCCCEEEEeeCCCCCchhhHHHHHHHHHh----------------------cCCCcEEEECCcCCHHHHHHHHH
Confidence 33444 457888888777753 237777777752 11489999988888999999999
Q ss_pred CCCCEEEe
Q 001846 975 CGMDGYVS 982 (1006)
Q Consensus 975 aG~d~yl~ 982 (1006)
+|+|+...
T Consensus 212 ~GAd~Vmv 219 (231)
T TIGR00736 212 AGADFVSV 219 (231)
T ss_pred hCCCeEEE
Confidence 99998864
No 290
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=46.86 E-value=2.3e+02 Score=31.34 Aligned_cols=84 Identities=6% Similarity=0.039 Sum_probs=59.7
Q ss_pred CHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHH
Q 001846 891 SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFD 970 (1006)
Q Consensus 891 ~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~ 970 (1006)
..-.+.+.+.. ..||.|++|++--..|--++...||.... ..++.++=....+.....
T Consensus 27 ~sp~~~E~~a~-~GfD~v~iD~EHg~~~~~~l~~~i~a~~~---------------------~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 27 TTSYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAIAP---------------------YASQPVIRPVEGSKPLIK 84 (267)
T ss_pred CCcHHHHHHHH-cCCCEEEEccccCCCCHHHHHHHHHHHHh---------------------cCCCeEEECCCCCHHHHH
Confidence 33455666655 35999999999999998888888887532 123344455667788899
Q ss_pred HHHHCCCCEEEeCCC-CHHHHHHHHHH
Q 001846 971 ECLKCGMDGYVSKPF-EEENLYRELAK 996 (1006)
Q Consensus 971 ~~~~aG~d~yl~KP~-~~~~L~~~l~~ 996 (1006)
+++++|+++.+.-=+ +.++..+.++.
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 999999999998445 45555555443
No 291
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=46.38 E-value=60 Score=35.29 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=31.9
Q ss_pred CCcEEEEecCCC------HHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 954 HLPILAMTADVI------HATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 954 ~~PIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
++|+++||-... +....+|.++|+|+.+.-....+++...+..+
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 589988887443 66688899999999998555556665555444
No 292
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=44.93 E-value=28 Score=36.24 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=40.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEe
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMD 911 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmD 911 (1006)
++||++|.....-.-+..+|+..|++|....|....++.+.. ..||.|++-
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-~~pd~iviS 52 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-LKPDAIVIS 52 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh-cCCCEEEEc
Confidence 479999999999999999999999999888877433344443 358999885
No 293
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.78 E-value=5e+02 Score=29.20 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=46.0
Q ss_pred EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCH
Q 001846 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966 (1006)
Q Consensus 887 ~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~ 966 (1006)
..+++-+||.+.++. ..|+|++|= |+.-+=-++.+.++. -.++-.++....
T Consensus 210 VEvetleea~eA~~a--GaDiImLDn-mspe~l~~av~~~~~--------------------------~~~lEaSGGIt~ 260 (294)
T PRK06978 210 IEVETLAQLETALAH--GAQSVLLDN-FTLDMMREAVRVTAG--------------------------RAVLEVSGGVNF 260 (294)
T ss_pred EEcCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHhhcC--------------------------CeEEEEECCCCH
Confidence 457899999999864 489999994 332222233333221 247888999999
Q ss_pred HhHHHHHHCCCCEE
Q 001846 967 ATFDECLKCGMDGY 980 (1006)
Q Consensus 967 ~~~~~~~~aG~d~y 980 (1006)
+...+..+.|+|-.
T Consensus 261 ~ni~~yA~tGVD~I 274 (294)
T PRK06978 261 DTVRAFAETGVDRI 274 (294)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999954
No 294
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=44.66 E-value=1.1e+02 Score=28.72 Aligned_cols=34 Identities=26% Similarity=0.195 Sum_probs=30.9
Q ss_pred eEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHH
Q 001846 704 KAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKD 737 (1006)
Q Consensus 704 r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~ 737 (1006)
|+||+|++..++.-+...|+-+|.++..+++.+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~ 34 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW 34 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH
Confidence 5899999999999999999999999999887554
No 295
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=44.21 E-value=3e+02 Score=28.52 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCCeEE----EeCCHHHHHHHhcCCCCCcEEEEeC-----CCCCCCHHHHHHHHHhhhchhhhhhccCCCC
Q 001846 873 MVAAGALKKFGATVE----CAASAKAALDKLQSPHCFDACFMDI-----QMPEMDGFEATRRIRQMESKANEQMMNGGSS 943 (1006)
Q Consensus 873 ~~l~~~L~~~G~~v~----~a~~g~eAl~~l~~~~~~DlIlmDi-----~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~ 943 (1006)
..+....++.|..+. .+.+..+++..+. ...|.|.... ......+.+.++++++.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-------------- 156 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK--LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-------------- 156 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH--CCCCEEEEcCcccccccCCCCCHHHHHHHHhh--------------
Confidence 334455666777654 5668888887554 3478877642 11124567777777742
Q ss_pred cCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 944 ~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.++||++ ++....+...+++++|+|.++.
T Consensus 157 ---------~~~~i~~-~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 ---------LGVKVAV-AGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred ---------cCCCEEE-ECCcCHHHHHHHHhcCCCEEEE
Confidence 2567765 4555689999999999998854
No 296
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.10 E-value=71 Score=35.08 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCcEEEEecCCC------HHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 954 HLPILAMTADVI------HATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 954 ~~PIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
.+|++.|+=... +....+|.++|+|+.+.-....++..+.+..+
T Consensus 87 ~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 87 NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 579888886655 66788999999999998777777766555544
No 297
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=44.06 E-value=63 Score=28.18 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Q 001846 76 DQRARMLQDQFNVTVNHVHALTILVS 101 (1006)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~~l~~l~~ 101 (1006)
++|...+|.+++.....+..+.....
T Consensus 38 ~~RE~kyq~~I~~lte~~~~~~~~~~ 63 (71)
T PF10960_consen 38 EEREEKYQEQIEKLTEKLNVIEEIKE 63 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999988888777776444
No 298
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.99 E-value=4.2e+02 Score=28.07 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 001846 330 PWTALTTAFFLFVIGLLVGYILYGAAIHI-----VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 399 (1006)
Q Consensus 330 ~w~~~~~~~~~~~i~ll~~~~~~~~~~~~-----~~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~ 399 (1006)
+|..++..+.++++.+++.+++|.-...+ ..+.+.+.+.++.+.+++.....-.+=++..-.|.+.=++.
T Consensus 48 ~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~ 122 (205)
T PRK06231 48 FWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ 122 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555565544433 23344444444444444443333333344444444443333
No 299
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.76 E-value=2.6e+02 Score=33.20 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=60.8
Q ss_pred cceEEEecCcHHHHH----HHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCH--HHHHHHHHhhhch
Q 001846 859 GKKILVVDDNGVNRM----VAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG--FEATRRIRQMESK 932 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~----~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~e~~ 932 (1006)
+.+|++++-|. .|. .+.......|..+..+.+..++.+.+.. ..+|+||+|. |+... .+.+++++++-..
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSELILIDT--AGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCEEEEeC--CCCCccCHHHHHHHHHHHHh
Confidence 56788888765 222 3333334557666666666677776654 5699999996 33211 2334444433211
Q ss_pred hhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHH----CCCCEEEe
Q 001846 933 ANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK----CGMDGYVS 982 (1006)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~----aG~d~yl~ 982 (1006)
. ....+.-.+++++|....++.....+ .|.++.|.
T Consensus 328 ~---------------~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 328 F---------------GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred h---------------cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 0 00112346888898888766666544 67777754
No 300
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=42.91 E-value=2.4e+02 Score=30.05 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=46.1
Q ss_pred CHHHHHHHhcCCCCCc-EEEEeCCCCCC---CHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCH
Q 001846 891 SAKAALDKLQSPHCFD-ACFMDIQMPEM---DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966 (1006)
Q Consensus 891 ~g~eAl~~l~~~~~~D-lIlmDi~MP~m---dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~ 966 (1006)
+..+.++.+.. ...+ ++++|+..-++ -.+++++++++. .++||++-..-.+.
T Consensus 147 ~~~~~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvi~~GGi~~~ 202 (234)
T cd04732 147 SLEELAKRFEE-LGVKAIIYTDISRDGTLSGPNFELYKELAAA-----------------------TGIPVIASGGVSSL 202 (234)
T ss_pred CHHHHHHHHHH-cCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----------------------cCCCEEEecCCCCH
Confidence 34455555544 2244 56777744222 126778888752 25899999988889
Q ss_pred HhHHHHHHCCCCEEEe
Q 001846 967 ATFDECLKCGMDGYVS 982 (1006)
Q Consensus 967 ~~~~~~~~aG~d~yl~ 982 (1006)
++..++++.|+|+.+.
T Consensus 203 ~di~~~~~~Ga~gv~v 218 (234)
T cd04732 203 DDIKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999764
No 301
>PLN03128 DNA topoisomerase 2; Provisional
Probab=42.68 E-value=27 Score=46.13 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=29.2
Q ss_pred EEEEecCCCCChhHHh--------hhccccccCCC---CCCCCCCC-ccccHHHHHHHHHHh
Q 001846 606 VCVEDTGIGIPLSAQE--------RVFMPFMQADS---STSRHYGG-TGIGLSISKCLVELM 655 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~--------~iF~pF~q~~~---s~s~~~gG-tGLGLsI~k~Lv~lm 655 (1006)
|+|.|+|.|||-+..+ -||.-...+.. ...+-.|| .|.|.+.|.-|-+.+
T Consensus 88 IsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~f 149 (1135)
T PLN03128 88 ISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTEF 149 (1135)
T ss_pred EEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCeE
Confidence 8999999999976443 23333322211 11112233 699999887765543
No 302
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=42.66 E-value=1.5e+02 Score=32.96 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCcEE--EEecCCCHHhHHHHHHCCCCEEEe-----CCCCHHHHHHHHHHHh
Q 001846 954 HLPIL--AMTADVIHATFDECLKCGMDGYVS-----KPFEEENLYRELAKFF 998 (1006)
Q Consensus 954 ~~PII--alTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~~l 998 (1006)
.+||| +...-.++++..+++++|+|+++. +.-++.+..+.+.+.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai 245 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAV 245 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 58997 777666999999999999999854 3334554444444433
No 303
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.37 E-value=3.8e+02 Score=32.04 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 001846 331 WTALTTAFFLFVIGLLVGYILYGAAIHIV-----KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPM 397 (1006)
Q Consensus 331 w~~~~~~~~~~~i~ll~~~~~~~~~~~~~-----~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPL 397 (1006)
|+.++..+.++++.+++.+++|.-...+. ++.+.+.+.++.+.+++.+...-.+-++....|-+.=+
T Consensus 2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii 73 (445)
T PRK13428 2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVV 73 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555554443332 23333444444444444433333334444444444333
No 304
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.10 E-value=2.1e+02 Score=31.12 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCeEEEeCCH---HHHHHHhcCCCCCcEEEEeCCCCCCCH------HHHHHHHHhhhchhhhhhccCCC
Q 001846 872 RMVAAGALKKFGATVECAASA---KAALDKLQSPHCFDACFMDIQMPEMDG------FEATRRIRQMESKANEQMMNGGS 942 (1006)
Q Consensus 872 ~~~l~~~L~~~G~~v~~a~~g---~eAl~~l~~~~~~DlIlmDi~MP~mdG------~e~~~~IR~~e~~~~~~~~~~~~ 942 (1006)
...+...+++.|.++..+-+. .+.++.+.. ....+++| -.+|+-.+ .+.++++|+.-
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~------------ 183 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV------------ 183 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc------------
Confidence 445667778899886655444 344444433 34678888 45666322 34566666531
Q ss_pred CcCCCcccCCCCCcEEEEecCC-CHHhHHHHHHCCCCEEEeCC
Q 001846 943 SVDGTAKRDELHLPILAMTADV-IHATFDECLKCGMDGYVSKP 984 (1006)
Q Consensus 943 ~~~~~~~~~~~~~PIIalTa~~-~~~~~~~~~~aG~d~yl~KP 984 (1006)
...||+ +-... +.++..++.++|+|+++.--
T Consensus 184 ----------~~~~i~-v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 ----------GNKYLV-VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred ----------CCCCEE-EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 124654 44444 78888899999999998764
No 305
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=42.06 E-value=2.9e+02 Score=29.15 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=52.1
Q ss_pred hhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEe---CCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCC
Q 001846 880 KKFGATVE-CAASAKAALDKLQSPHCFDACFMD---IQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955 (1006)
Q Consensus 880 ~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmD---i~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1006)
...|..+. .+.+-+++.+..+. .+|.+..- ..... .+++.++++++.- ...+
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~--g~~~i~~t~~~~~~~~-~~~~~~~~l~~~~---------------------~~~~ 173 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL--GAKIIGINNRDLKTFE-VDLNTTERLAPLI---------------------PKDV 173 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc--CCCEEEEeCCCccccC-cCHHHHHHHHHhC---------------------CCCC
Confidence 45787753 45666665555443 46766443 11112 2357778887521 0257
Q ss_pred cEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 956 PILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 956 PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
|+|+..+-.+.++..+++++|+|+++.
T Consensus 174 pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 174 ILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999964
No 306
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.90 E-value=1.7e+02 Score=32.42 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=47.9
Q ss_pred EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 886 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
..-+++-+||.+.++. .+|+|.+|= |+ ++.++++-++.. ...++ .+|..++..+
T Consensus 186 ~VEv~tleea~~A~~~--GaDiI~LDn----~~-~e~l~~~v~~~~------------------~~~~~-~~ieAsGgIt 239 (273)
T PRK05848 186 EIECESLEEAKNAMNA--GADIVMCDN----MS-VEEIKEVVAYRN------------------ANYPH-VLLEASGNIT 239 (273)
T ss_pred EEEeCCHHHHHHHHHc--CCCEEEECC----CC-HHHHHHHHHHhh------------------ccCCC-eEEEEECCCC
Confidence 3458899999998864 489999874 33 344444433211 01123 3677788889
Q ss_pred HHhHHHHHHCCCCEEE
Q 001846 966 HATFDECLKCGMDGYV 981 (1006)
Q Consensus 966 ~~~~~~~~~aG~d~yl 981 (1006)
.+...++.+.|+|.+.
T Consensus 240 ~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 240 LENINAYAKSGVDAIS 255 (273)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999999765
No 307
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.88 E-value=2.5e+02 Score=25.65 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=43.2
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEe------CCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECA------ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQM 929 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a------~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~ 929 (1006)
+||||-....+...++..++++|++.... ......++..- ...|+|++=. +.-+-.++..+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t---~~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFT---DYVSHNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEe---CCcChHHHHHHHHH
Confidence 48999998888889999999999998887 22222243322 2368886633 33455667777754
No 308
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=41.80 E-value=3.8e+02 Score=27.02 Aligned_cols=56 Identities=11% Similarity=0.247 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 001846 340 LFVIGLLVGYILYGAAIHIV-----KVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRT 395 (1006)
Q Consensus 340 ~~~i~ll~~~~~~~~~~~~~-----~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRT 395 (1006)
++++.+++..++|.-+..+. .+..++.+.++.+.+++.....-.+-++..-.|-..
T Consensus 18 Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ 78 (164)
T PRK14471 18 FLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDA 78 (164)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555444332 333444444444444444333333344444444333
No 309
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=41.59 E-value=1.8e+02 Score=31.84 Aligned_cols=87 Identities=11% Similarity=0.000 Sum_probs=60.1
Q ss_pred eCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHh
Q 001846 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968 (1006)
Q Consensus 889 a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~ 968 (1006)
.......++++.. ..||.|+.|++--.+|--++...||..+. .....++=....+..+
T Consensus 19 ~~~~p~~~e~~~~-~g~D~v~iDlEH~~~~~~~~~~~~~a~~~---------------------~g~~~~VRv~~~~~~~ 76 (249)
T TIGR02311 19 GLADPYAAEICAG-AGFDWLLIDGEHAPNDVRTILSQLQALAP---------------------YPSSPVVRPAIGDPVL 76 (249)
T ss_pred eCCCcHHHHHHHh-cCCCEEEEeccCCCCCHHHHHHHHHHHHh---------------------cCCCcEEECCCCCHHH
Confidence 3344455666655 35999999999988988888888876421 1122333334556678
Q ss_pred HHHHHHCCCCEEE-eCCCCHHHHHHHHHHH
Q 001846 969 FDECLKCGMDGYV-SKPFEEENLYRELAKF 997 (1006)
Q Consensus 969 ~~~~~~aG~d~yl-~KP~~~~~L~~~l~~~ 997 (1006)
..+++++|+++.+ +|--+.++..+.++..
T Consensus 77 i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 77 IKQLLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred HHHHhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 8999999999985 5556788877776654
No 310
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.40 E-value=1.1e+02 Score=32.84 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=48.9
Q ss_pred CCHHHHHHHhcCCCCCc-EEEEeCCCCCC-CH--HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 890 ASAKAALDKLQSPHCFD-ACFMDIQMPEM-DG--FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 890 ~~g~eAl~~l~~~~~~D-lIlmDi~MP~m-dG--~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
.+..+..+.+.. ..++ ++++|+..-++ .| ++.++++++. .++|||+-..-.+
T Consensus 146 ~~~~e~~~~~~~-~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----------------------~~ipvia~GGi~~ 201 (233)
T PRK00748 146 VTAEDLAKRFED-AGVKAIIYTDISRDGTLSGPNVEATRELAAA-----------------------VPIPVIASGGVSS 201 (233)
T ss_pred CCHHHHHHHHHh-cCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCC
Confidence 344555555554 2356 78888754322 33 6788888752 2589999998899
Q ss_pred HHhHHHHHHCC-CCEEEe
Q 001846 966 HATFDECLKCG-MDGYVS 982 (1006)
Q Consensus 966 ~~~~~~~~~aG-~d~yl~ 982 (1006)
.++..++++.| +++.+.
T Consensus 202 ~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 202 LDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHcCCccEEEE
Confidence 99999999998 999875
No 311
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=41.36 E-value=2e+02 Score=31.54 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=60.5
Q ss_pred CCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhH
Q 001846 890 ASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF 969 (1006)
Q Consensus 890 ~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~ 969 (1006)
...-.+.+.+.. ..||.|++|++--.+|--++...||..+. ..++.++=....+....
T Consensus 20 ~~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~~~a~~~---------------------~g~~~~VRvp~~~~~~i 77 (249)
T TIGR03239 20 LGNPITTEVLGL-AGFDWLLLDGEHAPNDVLTFIPQLMALKG---------------------SASAPVVRPPWNEPVII 77 (249)
T ss_pred CCCcHHHHHHHh-cCCCEEEEecccCCCCHHHHHHHHHHHhh---------------------cCCCcEEECCCCCHHHH
Confidence 344456666655 35999999999999999888888886432 12334444466788899
Q ss_pred HHHHHCCCCEEEeCCC-CHHHHHHHHHH
Q 001846 970 DECLKCGMDGYVSKPF-EEENLYRELAK 996 (1006)
Q Consensus 970 ~~~~~aG~d~yl~KP~-~~~~L~~~l~~ 996 (1006)
.+++++|+++.+.-=+ +.++..++++.
T Consensus 78 ~r~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 78 KRLLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred HHHhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 9999999999987333 55666655543
No 312
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=41.19 E-value=82 Score=35.37 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccccCCCCCCCHH
Q 001846 36 WLPKALVLWIMGMAFISMSIYRGMDEENKIRRKEVLGSMCDQRARMLQDQFNVTVNHVHALTILVSTFHYFKNPSALDQD 115 (1006)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~v~~~ 115 (1006)
-+-++|+++++.-++++..+|.+..++...++++.+ ++|.++++..+| ++++
T Consensus 7 vR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l----~~~~~~~~~kyn------------------------~s~~ 58 (350)
T KOG4404|consen 7 VRTLLLIVCTFTYLLVGAAVFDALESENEARERERL----ERRLANLKRKYN------------------------LSEE 58 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH----HHHHHHHHHhhC------------------------CCHH
Confidence 345677777778888999999988877766555553 566666666665 8889
Q ss_pred HHHHHHHHhhhhCCC
Q 001846 116 TFAEYTTRTAFERPL 130 (1006)
Q Consensus 116 ~f~~~~~~~~~~~p~ 130 (1006)
||+.+..-.+.-.|.
T Consensus 59 d~r~~er~i~~s~ph 73 (350)
T KOG4404|consen 59 DYRELERVILKSEPH 73 (350)
T ss_pred HHHHHHHHHHhcCcc
Confidence 999887766555555
No 313
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=40.72 E-value=2.1e+02 Score=32.28 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=58.6
Q ss_pred HHHHHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCC---C--CCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCc
Q 001846 875 AAGALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQ---M--PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTA 948 (1006)
Q Consensus 875 l~~~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~---M--P~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~ 948 (1006)
+-..+++.|..|. .+.+.++|....+. ..|.|+..-. . ....-+++++++++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~--GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA--GADAVIAEGMESGGHIGELTTMALVPQVVDA------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc--CCCEEEEECcccCCCCCCCcHHHHHHHHHHH-------------------
Confidence 4455677787754 57788888766553 4898887432 1 122347788888752
Q ss_pred ccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 949 KRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 949 ~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.++|||+--+-.+.++..+++..|+|+.+.
T Consensus 160 ----~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 ----VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 158999988888889999999999998754
No 314
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=40.33 E-value=2.8e+02 Score=34.12 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=64.5
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCH-HHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASA-KAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g-~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+..++++|.|+...+.+ ++.|+.+.+.+-. .+.++...- .+.|.++.-..=+..+ ..++..+|+.
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~i-~~a~~viv~~~~~~~~-~~iv~~~~~~-------- 505 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGYEA-GEIVASAREK-------- 505 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcCc-cccCEEEEEcCChHHH-HHHHHHHHHH--------
Confidence 44689999988765443 4568887765533 345555543 3578777654321111 2344555653
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.++.+||+-+.+ ++..+.+.++|+|..+. | .+.+-+.+.+.+..
T Consensus 506 --------------~~~~~iiar~~~--~~~~~~l~~~Gad~vv~-p--~~~~a~~i~~~l~~ 549 (558)
T PRK10669 506 --------------RPDIEIIARAHY--DDEVAYITERGANQVVM-G--EREIARTMLELLET 549 (558)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHcCCCEEEC-h--HHHHHHHHHHHhcC
Confidence 235688887653 56666778999996663 3 44555566666544
No 315
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=40.24 E-value=74 Score=33.17 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=40.6
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCC--eE-EEeCCHHHHHHHhcCCCCCcEEEEeC
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGA--TV-ECAASAKAALDKLQSPHCFDACFMDI 912 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~--~v-~~a~~g~eAl~~l~~~~~~DlIlmDi 912 (1006)
.++++||-|.....+++.-++..|. .+ ....|...++..+.....||+||+|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 5799999999999999998888773 23 33455557777776544599999996
No 316
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=40.00 E-value=60 Score=32.21 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=44.8
Q ss_pred cccceEEEecCcHHHHHHHHHHHhhcCCeEEEeC----CHHHHHHHhcCCCCCcEEEEeCCCCC
Q 001846 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAA----SAKAALDKLQSPHCFDACFMDIQMPE 916 (1006)
Q Consensus 857 ~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~----~g~eAl~~l~~~~~~DlIlmDi~MP~ 916 (1006)
+.|++|+|+.......+-+..+|.+.|+.|+.++ |.++++. .-|+|+.-.--|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------hCCEEEEecCCCC
Confidence 4688999999999999999999999999999998 5555432 2599988876664
No 317
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=39.99 E-value=4e+02 Score=29.29 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=68.0
Q ss_pred HHHHHhhcCCeEEEe--CCHHHHHHHhcCCCCCcEEEEeCCCCCCCH-----HHHHHHHHhhhchhhhhhccCCCCcCCC
Q 001846 875 AAGALKKFGATVECA--ASAKAALDKLQSPHCFDACFMDIQMPEMDG-----FEATRRIRQMESKANEQMMNGGSSVDGT 947 (1006)
Q Consensus 875 l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~~e~~~~~~~~~~~~~~~~~ 947 (1006)
+.+.|-+.||.|... .|..-|-+ +..-. -.++|=+--|.-.| -..++.|++
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~r-Led~G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e------------------- 186 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKH-LEDIG--CATVMPLGSPIGSGQGLQNLLNLQIIIE------------------- 186 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHH-HHHcC--CeEEeeccCcccCCCCCCCHHHHHHHHH-------------------
Confidence 445566789998754 44444433 33322 45677777776655 345666664
Q ss_pred cccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE-----eCCCCHHHHHHHHHHHh
Q 001846 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYV-----SKPFEEENLYRELAKFF 998 (1006)
Q Consensus 948 ~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~~~l 998 (1006)
...+|||.=.+-...++...+++.|+|+.+ .|--++.++..+++...
T Consensus 187 ----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV 238 (267)
T CHL00162 187 ----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238 (267)
T ss_pred ----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHH
Confidence 236899998889999999999999999984 56678877777776543
No 318
>PRK11677 hypothetical protein; Provisional
Probab=39.96 E-value=1.5e+02 Score=29.30 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001846 338 FFLFVIGLLVGYILYGAA 355 (1006)
Q Consensus 338 ~~~~~i~ll~~~~~~~~~ 355 (1006)
++.+++|+++|+++.+..
T Consensus 7 ~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 355567777777766543
No 319
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=39.65 E-value=3.1e+02 Score=29.72 Aligned_cols=83 Identities=19% Similarity=0.102 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCeEEE--eCCHHHHHHHhcCCCCCcEEEEeCCCCCCCH-----HHHHHHHHhhhchhhhhhccCCCCcCC
Q 001846 874 VAAGALKKFGATVEC--AASAKAALDKLQSPHCFDACFMDIQMPEMDG-----FEATRRIRQMESKANEQMMNGGSSVDG 946 (1006)
Q Consensus 874 ~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~~e~~~~~~~~~~~~~~~~ 946 (1006)
.+.+.|-+.||.|.. ..|..-|-+...- . -.++|=+--|.-.| -..++.|++.
T Consensus 114 ~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-G--caavMPlgsPIGSg~Gi~n~~~l~~i~~~----------------- 173 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPYCTDDPVLAKRLEDA-G--CAAVMPLGSPIGSGRGIQNPYNLRIIIER----------------- 173 (247)
T ss_dssp HHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T---SEBEEBSSSTTT---SSTHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHHHC-C--CCEEEecccccccCcCCCCHHHHHHHHHh-----------------
Confidence 345567788999874 4455555443332 2 34677777787666 3566777652
Q ss_pred CcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 947 TAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 947 ~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
..+|||+=.+-..+.+...+++.|+|+.|.
T Consensus 174 ------~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 174 ------ADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp ------GSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred ------cCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 168999988889999999999999999986
No 320
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=39.54 E-value=2.2e+02 Score=28.95 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=49.8
Q ss_pred cCCeEEE-eCCHHHHHHHhcCCCCCcEEEEeCCCC--------CCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCC
Q 001846 882 FGATVEC-AASAKAALDKLQSPHCFDACFMDIQMP--------EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDE 952 (1006)
Q Consensus 882 ~G~~v~~-a~~g~eAl~~l~~~~~~DlIlmDi~MP--------~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~ 952 (1006)
.+..+.. +.+..++.+.... .+|.|+.+---| .-.|.+.++++++.
T Consensus 94 ~~~~~g~~~~t~~~~~~~~~~--g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 148 (196)
T cd00564 94 PDLIIGVSTHSLEEALRAEEL--GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL----------------------- 148 (196)
T ss_pred CCCEEEeeCCCHHHHHHHhhc--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----------------------
Confidence 3444433 3566666665543 489998764433 23567778887752
Q ss_pred CCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 953 LHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 953 ~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.++||++.-+- ..+...++.++|+|++..
T Consensus 149 ~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 149 VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 25899988665 578889999999998854
No 321
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=39.13 E-value=3.2e+02 Score=30.59 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=41.3
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEE------EeCCCCHHHHHHHHHHHhccCC
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGY------VSKPFEEENLYRELAKFFKSKP 1002 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~y------l~KP~~~~~L~~~l~~~l~~~~ 1002 (1006)
++|||+...-.+.++..+++.+|+|.. +..|.-..++.+.+.+|+..+.
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999854 4578888888888888887544
No 322
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.08 E-value=75 Score=35.09 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=32.3
Q ss_pred CCcEEEEecC------CCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 954 HLPILAMTAD------VIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 954 ~~PIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
.+|++.||=. ..+....+|.++|+|+.+.--+..++....+..+
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 5899999854 4456688999999999999766666655444433
No 323
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=39.04 E-value=56 Score=33.97 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=34.4
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
||+||.....-.-+..+|++.|+.+.+..+-...++.+.. ..||.|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA-LLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh-cCCCEEEE
Confidence 8999999999999999999999998887654322333332 24785554
No 324
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=38.76 E-value=54 Score=40.25 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.2
Q ss_pred EEEEEEEecCCCCChhHHhhhccccccC
Q 001846 603 TLMVCVEDTGIGIPLSAQERVFMPFMQA 630 (1006)
Q Consensus 603 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~ 630 (1006)
.+.+.|.|+|.|+..++++.+=++|+..
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 3568999999999999999998888754
No 325
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=38.68 E-value=2.3e+02 Score=30.97 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCcEEEEecCCCHHhHHHHHHCC-CCEEEe------CCCCHHHHHHHHH
Q 001846 954 HLPILAMTADVIHATFDECLKCG-MDGYVS------KPFEEENLYRELA 995 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG-~d~yl~------KP~~~~~L~~~l~ 995 (1006)
++|||+.-.-.+.++..++++.| +|+.+. +=++.+++.+.++
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 58999999999999999999988 999544 3456665555444
No 326
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=38.56 E-value=46 Score=40.06 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred EEEEEecCCCCChhHHhhhccccccC
Q 001846 605 MVCVEDTGIGIPLSAQERVFMPFMQA 630 (1006)
Q Consensus 605 ~i~V~DtG~GI~~e~~~~iF~pF~q~ 630 (1006)
.+.|+|+|.||-.++++-+-++|...
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 36788999999999999999999754
No 327
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=38.54 E-value=2.9e+02 Score=31.46 Aligned_cols=105 Identities=16% Similarity=0.071 Sum_probs=65.5
Q ss_pred ecCcHHHHHHHHHHHhhcCCeE--EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCC-----HHHHHHHHHhhhchhhhhh
Q 001846 865 VDDNGVNRMVAAGALKKFGATV--ECAASAKAALDKLQSPHCFDACFMDIQMPEMD-----GFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 865 VDDn~~n~~~l~~~L~~~G~~v--~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~md-----G~e~~~~IR~~e~~~~~~~ 937 (1006)
..|.....+..+.+ -+.|+.| .|++|...|-....- . + +.+|=+-=|.-. --+.++.+++.
T Consensus 180 lpd~~~~v~aa~~L-~~~Gf~v~~yc~~d~~~a~~l~~~-g-~-~avmPl~~pIGsg~gv~~p~~i~~~~e~-------- 247 (326)
T PRK11840 180 YPDMVETLKATEIL-VKEGFQVMVYCSDDPIAAKRLEDA-G-A-VAVMPLGAPIGSGLGIQNPYTIRLIVEG-------- 247 (326)
T ss_pred ccCHHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHhc-C-C-EEEeeccccccCCCCCCCHHHHHHHHHc--------
Confidence 44444444444444 4559987 678888887665443 3 3 444432222222 34556666642
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe-----CCCCHHHHHHHHHH
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS-----KPFEEENLYRELAK 996 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~ 996 (1006)
..+|||.=.+-...++...+++.|+|+.+. |-=++-...++.+.
T Consensus 248 ---------------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~ 296 (326)
T PRK11840 248 ---------------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKL 296 (326)
T ss_pred ---------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHH
Confidence 258999888888999999999999999864 54555555555443
No 328
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=38.36 E-value=2.2e+02 Score=31.58 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=65.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEE--eCCHHH---HHHHhcCCCCCcEEEEeCCCCCCCH---------------
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVEC--AASAKA---ALDKLQSPHCFDACFMDIQMPEMDG--------------- 919 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~--a~~g~e---Al~~l~~~~~~DlIlmDi~MP~mdG--------------- 919 (1006)
-|||=+|-|+...+.....-+++|..+.. +.-.++ -.++++. +.||++++= +-||
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~-~~PDIlViT----GHD~~~K~~~d~~dl~~Yr 180 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE-YRPDILVIT----GHDGYLKNKKDYSDLNNYR 180 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH-cCCCEEEEe----CchhhhcCCCChhhhhhhh
Confidence 38999999999998888888888877653 222222 2334444 779988762 2233
Q ss_pred -----HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCC
Q 001846 920 -----FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984 (1006)
Q Consensus 920 -----~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP 984 (1006)
.|+.+..|+.++.. ==+++-|-+-+...+..++|||| |=+-|
T Consensus 181 nSkyFVeaV~~aR~~ep~~----------------------D~LVIfAGACQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 181 NSKYFVEAVKEARKYEPNL----------------------DDLVIFAGACQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred ccHHHHHHHHHHHhcCCCc----------------------ccEEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 46777777765421 12334467789999999999998 54444
No 329
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=38.32 E-value=2.2e+02 Score=29.03 Aligned_cols=96 Identities=15% Similarity=0.300 Sum_probs=56.3
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCC--eEE-EeCCHHHHHHHhcCCCCCcEEEEe---------------C--CCCCCC
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGA--TVE-CAASAKAALDKLQSPHCFDACFMD---------------I--QMPEMD 918 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~--~v~-~a~~g~eAl~~l~~~~~~DlIlmD---------------i--~MP~md 918 (1006)
..+|.-||=|+.....++.=.+-+|. .+. ...|-.+.+..++....+|+||+| + .|..++
T Consensus 21 ~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~ 100 (163)
T PF09445_consen 21 FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFN 100 (163)
T ss_dssp T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BSSGGGGGSSSB-TTTSSSS--
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCCCccccccCccCHHHccCCCC
Confidence 45899999999999999999999985 344 455666655444432227999986 3 556667
Q ss_pred HHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Q 001846 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 919 G~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l 998 (1006)
+.++++..++. .|-|++ ||++-.+..+|.+...++.
T Consensus 101 ~~~l~~~~~~~-------------------------t~nv~l-------------------~LPRn~dl~ql~~~~~~l~ 136 (163)
T PF09445_consen 101 LEDLLKAARKI-------------------------TPNVVL-------------------FLPRNSDLNQLSQLTRELF 136 (163)
T ss_dssp HHHHHHHHHHH--------------------------S-EEE-------------------EEETTB-HHHHHHT----T
T ss_pred HHHHHHHHHhh-------------------------CCCEEE-------------------EeCCCCCHHHHHHHhcccc
Confidence 77777776653 223333 8888999999877765543
No 330
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.19 E-value=1.4e+02 Score=33.49 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=48.1
Q ss_pred eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCC
Q 001846 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964 (1006)
Q Consensus 885 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~ 964 (1006)
....+.+-+||.+.+.. ..|+|.+| +|+.-+=-++.+.+|.. .++ ..|..++..
T Consensus 202 IeVEv~tl~ea~eal~~--gaDiI~LD-nm~~e~vk~av~~~~~~----------------------~~~-v~ieaSGGI 255 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAE--GAELVLLD-NFPVWQTQEAVQRRDAR----------------------APT-VLLESSGGL 255 (289)
T ss_pred EEEEcCCHHHHHHHHHc--CCCEEEeC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 34567899999999864 48999999 44422222223322221 112 367889999
Q ss_pred CHHhHHHHHHCCCCEEE
Q 001846 965 IHATFDECLKCGMDGYV 981 (1006)
Q Consensus 965 ~~~~~~~~~~aG~d~yl 981 (1006)
+.+...+..+.|+|.+.
T Consensus 256 ~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 256 TLDTAAAYAETGVDYLA 272 (289)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999999664
No 331
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=38.15 E-value=4.4e+02 Score=26.62 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 331 WTALTTAFFLFVIGLLVGYILYGAAIHI 358 (1006)
Q Consensus 331 w~~~~~~~~~~~i~ll~~~~~~~~~~~~ 358 (1006)
|..++..+.++++.+++.+++|......
T Consensus 9 ~~~~~~~inflil~~lL~~fl~kpi~~~ 36 (164)
T PRK14473 9 GLLIAQLINFLLLIFLLRTFLYRPVLNL 36 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455556666554433
No 332
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=37.72 E-value=3e+02 Score=29.07 Aligned_cols=104 Identities=10% Similarity=0.040 Sum_probs=57.8
Q ss_pred HHHHHHH---cCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEcc-CccccCCCc-chhHhhhhcCCCCCcCCCCeE
Q 001846 718 TQYHLNR---LGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEK-DCWISGEDS-GFNAQLLDWKPNGHVFKLPKL 792 (1006)
Q Consensus 718 ~~~~l~~---~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 792 (1006)
....|+. .|+.+..+.+..++.+.... ..||++++|. |..+++.++ .....+....+ .. ++
T Consensus 6 i~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--------~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p-----~~-~i 71 (207)
T PRK11475 6 IESLFRKFPGNPYKLHTFSSQSSFQDAMSR--------ISFSAVIFSLSAMRSERREGLSCLTELAIKFP-----RM-RR 71 (207)
T ss_pred HHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--------CCCCEEEeeccccCCCCCCHHHHHHHHHHHCC-----CC-CE
Confidence 3444543 56666778888888776432 4679998664 333344332 22222222111 23 44
Q ss_pred EEEecCCChhHHHHHH-hCCCCceeecccchHHHHHHHHHHhhcc
Q 001846 793 ILLATNISKDECDKAK-AGGFADTVIMKPLRASMIAACLQQVLST 836 (1006)
Q Consensus 793 ill~~~~~~~~~~~~~-~~~~~~~~l~kPl~~~~l~~~l~~~l~~ 836 (1006)
++++............ ..| ...++.||.....+..++..++..
T Consensus 72 Ivlt~~~~~~~~~~~~~~~G-a~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 72 LVIADDDIEARLIGSLSPSP-LDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred EEEeCCCCHHHHHHHHHHcC-CeEEEecCCCHHHHHHHHHHHHCC
Confidence 4444433222222221 234 457899999999999999887753
No 333
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.71 E-value=3.3e+02 Score=28.99 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=52.2
Q ss_pred HHhhcCCeEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCC-------CCHHHHHHHHHhhhchhhhhhccCCCCcCCCcc
Q 001846 878 ALKKFGATVE-CAASAKAALDKLQSPHCFDACFMDIQMPE-------MDGFEATRRIRQMESKANEQMMNGGSSVDGTAK 949 (1006)
Q Consensus 878 ~L~~~G~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-------mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~ 949 (1006)
.+++.+..+. .+.+.+++....+ ...|.|+.+-.-++ ...++.++++|+.
T Consensus 97 ~~~~~~i~~i~~v~~~~~~~~~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-------------------- 154 (236)
T cd04730 97 RLKAAGIKVIPTVTSVEEARKAEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-------------------- 154 (236)
T ss_pred HHHHcCCEEEEeCCCHHHHHHHHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH--------------------
Confidence 3445565544 3456666554443 34788877542111 2457788888752
Q ss_pred cCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeC
Q 001846 950 RDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983 (1006)
Q Consensus 950 ~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~K 983 (1006)
..+||++.-+-...++..+++++|+|+.+.-
T Consensus 155 ---~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 ---VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ---hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 1579998777767788999999999988654
No 334
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=37.57 E-value=2.3e+02 Score=29.23 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=48.9
Q ss_pred EEeCCHHHHHHHhcCCCCCcEEEEeCCCC--------CCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEE
Q 001846 887 ECAASAKAALDKLQSPHCFDACFMDIQMP--------EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPIL 958 (1006)
Q Consensus 887 ~~a~~g~eAl~~l~~~~~~DlIlmDi~MP--------~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PII 958 (1006)
..+.+..++.+..+ ...|.|+.+--.| ...|++.++.+.+.- ..+||+
T Consensus 101 ~s~h~~~e~~~a~~--~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~----------------------~~~pv~ 156 (196)
T TIGR00693 101 VSTHNLEELAEAEA--EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS----------------------IDIPIV 156 (196)
T ss_pred EeCCCHHHHHHHhH--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----------------------CCCCEE
Confidence 45677777766443 3489998765444 224788888886521 147988
Q ss_pred EEecCCCHHhHHHHHHCCCCEEEe
Q 001846 959 AMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 959 alTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
++-+ ...+...++++.|++++..
T Consensus 157 a~GG-I~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 157 AIGG-ITLENAAEVLAAGADGVAV 179 (196)
T ss_pred EECC-cCHHHHHHHHHcCCCEEEE
Confidence 8754 4678888999999998753
No 335
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.51 E-value=2.7e+02 Score=31.05 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=59.5
Q ss_pred eEEEecCcHHHHHHHHHHHh---hcC--C-eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhh
Q 001846 861 KILVVDDNGVNRMVAAGALK---KFG--A-TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKAN 934 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~---~~G--~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~ 934 (1006)
.|||-|++-... -+...++ +.. . ....+++-+||.+.++. ..|+|++|=..|++ =-++.+.++...
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a--gaDiI~LDn~~~e~-l~~~v~~l~~~~---- 227 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA--GADIIMLDNMTPEE-IREVIEALKREG---- 227 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc--CcCEEEECCCCHHH-HHHHHHHHHhcC----
Confidence 477777764433 3333333 222 1 24458899999999865 47999999654332 122333333210
Q ss_pred hhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE
Q 001846 935 EQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981 (1006)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl 981 (1006)
.. +-..|..++....+...+..+.|+|.+.
T Consensus 228 ----------------~~-~~~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 228 ----------------LR-ERVKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred ----------------cC-CCEEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 01 1246788899999999999999999664
No 336
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.31 E-value=4.7e+02 Score=26.72 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=72.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHH
Q 001846 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDV 464 (1006)
Q Consensus 385 Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v 464 (1006)
+.+-+.|||=.|..+|..-++||.+..-+ .+..+.|..|...+ .+.|.|+|+--|.-----..||-.+. +.+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~ad---dDAm~LIrsSArna----s~rLqFaR~AFGAsgSag~~iDtgea-ek~ 89 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGAD---DDAMDLIRSSARNA----SVRLQFARLAFGASGSAGASIDTGEA-EKA 89 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCcc---HHHHHHHHHHhhhH----HHHHHHHHHHhcccccccccccchhH-HHH
Confidence 45679999999999999999999876654 34556666666654 35678999876544333344555543 222
Q ss_pred HHHHHHHHHhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhccCCCCe-EEEEE
Q 001846 465 LSLFSEKSRNKGIELAVFVSDKVPEFVLGDPGRFRQIITNLVGNSVKFTERGH-IFVKV 522 (1006)
Q Consensus 465 ~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rl~QIl~NLl~NAiKfT~~G~-I~v~v 522 (1006)
...| .+.+| -++....... .-...+. ..+.||+-=|--.-++|. +.+++
T Consensus 90 A~~~--~a~ek-pe~~W~g~r~-----~~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 90 AQDF--FANEK-PELTWNGPRA-----ILPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHH--HhccC-CcccccCChh-----hcCcchH-HHHHHHHHHHcccCCCCCeeEEEe
Confidence 2222 12233 4554433221 1233343 357788877766667764 44444
No 337
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=37.09 E-value=1.9e+02 Score=25.27 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=46.6
Q ss_pred hHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeEeecHHHHHHHHHHHH
Q 001846 389 VSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKALIALINEVLDRAKIEARKLELEAVLFNLRAILDDVLSLF 468 (1006)
Q Consensus 389 vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie~g~~~l~~~~~dL~~ll~~v~~~~ 468 (1006)
+.|=++|=|..|.+++.+-.....+++.+..+..+......+. ++-+.|.-+ + ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia-~vh~~L~~~----~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIA-LVHEQLYQS----E----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHhcC----C----CCCeecHHHHHHHHHHHH
Confidence 5799999999999999988766666665555554444333332 223332221 1 234689999999988766
Q ss_pred H
Q 001846 469 S 469 (1006)
Q Consensus 469 ~ 469 (1006)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 338
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=37.09 E-value=6.9 Score=47.38 Aligned_cols=50 Identities=28% Similarity=0.510 Sum_probs=30.8
Q ss_pred EEEEecCCCCChhHHhh--------hccccccCCC----CCCCCCCCccccHHHHHHHHHHh
Q 001846 606 VCVEDTGIGIPLSAQER--------VFMPFMQADS----STSRHYGGTGIGLSISKCLVELM 655 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~~--------iF~pF~q~~~----s~s~~~gGtGLGLsI~k~Lv~lm 655 (1006)
|+|.|+|.|||-+.+++ ||.-..-... +-.-..|=.|.|.|.|.-|-+..
T Consensus 70 isV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 70 ISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred EEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceE
Confidence 89999999999887544 4443321111 11111234689999988876543
No 339
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=36.90 E-value=2.2e+02 Score=29.53 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=54.2
Q ss_pred hcCCe-EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEE
Q 001846 881 KFGAT-VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959 (1006)
Q Consensus 881 ~~G~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIa 959 (1006)
++|.. +.-+.+.+|+.+.++. .+|.|-++- ++.. |.+.++.++.. .+++|+++
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~~~--Gad~i~~~p-~~~~-g~~~~~~l~~~----------------------~~~~p~~a 148 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQALEL--GADIVKLFP-AEAV-GPAYIKALKGP----------------------FPQVRFMP 148 (190)
T ss_pred HcCCcEECCcCCHHHHHHHHHC--CCCEEEEcC-Cccc-CHHHHHHHHhh----------------------CCCCeEEE
Confidence 34443 3356688999888754 479998864 4444 99999998752 22578887
Q ss_pred EecCCCHHhHHHHHHCCCCEEEeC
Q 001846 960 MTADVIHATFDECLKCGMDGYVSK 983 (1006)
Q Consensus 960 lTa~~~~~~~~~~~~aG~d~yl~K 983 (1006)
.-+- +.+...+++++|++....-
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEc
Confidence 6554 8889999999999987543
No 340
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=36.86 E-value=6e+02 Score=27.81 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=13.6
Q ss_pred ecHHHHHHHHHH-HH--HHHhccC
Q 001846 493 GDPGRFRQIITN-LV--GNSVKFT 513 (1006)
Q Consensus 493 gD~~rl~QIl~N-Ll--~NAiKfT 513 (1006)
.+..+++..|.. ++ +..+.|.
T Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~f~ 212 (250)
T PRK14474 189 DLRAQILESLHQTHLIPGTDIHFV 212 (250)
T ss_pred HHHHHHHHHHHHHhcCCCCceeee
Confidence 466778888887 77 4445554
No 341
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=36.04 E-value=4.9e+02 Score=26.61 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=12.2
Q ss_pred CchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001846 328 STPWTALTTAFFL-FVIGLLVGYILYGAAI 356 (1006)
Q Consensus 328 ~~~w~~~~~~~~~-~~i~ll~~~~~~~~~~ 356 (1006)
..+|..+.+.++. +++.+++.+++|..+.
T Consensus 15 ~~~~~t~~~~iInFliL~~lL~~~l~~pi~ 44 (173)
T PRK13453 15 GVEWGTVIVTVLTFIVLLALLKKFAWGPLK 44 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445444443333 3333334445554443
No 342
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=35.77 E-value=2.2e+02 Score=31.42 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=65.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEE--e---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCH---------------
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVEC--A---ASAKAALDKLQSPHCFDACFMDIQMPEMDG--------------- 919 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~--a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--------------- 919 (1006)
-+||=+|-|+...+.....-+++|..+.- + .-.+.-.+.+++ +.||++++= +-||
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~-~~PDIlViT----GHD~~~K~~~d~~dl~~Yr 179 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE-VRPDILVIT----GHDAYSKNKGNYMDLNAYR 179 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH-hCCCEEEEe----CchhhhcCCCChhhhhhhh
Confidence 48999999999998888888888876542 2 223333445554 679988762 2222
Q ss_pred -----HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCC
Q 001846 920 -----FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984 (1006)
Q Consensus 920 -----~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP 984 (1006)
.|+.+..|+.++. .==+++-|-+-+...+..++|||| |=+-|
T Consensus 180 nSkyFVeaVk~aR~y~~~----------------------~D~LVIFAGACQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 180 HSKYFVETVREARKYVPS----------------------LDQLVIFAGACQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred hhHHHHHHHHHHHhcCCC----------------------cccEEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 3567777765532 112444567789999999999998 55544
No 343
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=35.43 E-value=1.8e+02 Score=36.09 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=60.6
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHH-HHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA-ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~e-Al~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+..++++|.|+...+.+ ++.|+.+...+-.+. .++...- ...|+++.-..=+ .+-..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi-~~A~~vv~~~~d~-~~n~~i~~~~r~~-------- 488 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGA-EKAEAIVITCNEP-EDTMKIVELCQQH-------- 488 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCC-ccCCEEEEEeCCH-HHHHHHHHHHHHH--------
Confidence 44689999988765543 457888776654443 4444433 3467777655433 2234566667753
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~K 983 (1006)
.++++||+-+.+ .+..++..++|+|..+.-
T Consensus 489 --------------~p~~~IiaRa~~--~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 489 --------------FPHLHILARARG--RVEAHELLQAGVTQFSRE 518 (601)
T ss_pred --------------CCCCeEEEEeCC--HHHHHHHHhCCCCEEEcc
Confidence 346788887654 566778889999987743
No 344
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=35.41 E-value=64 Score=28.17 Aligned_cols=47 Identities=15% Similarity=0.346 Sum_probs=34.5
Q ss_pred eeeceeecCCcccceEEEeecccCCCCCCCCHHHHHHhhccceecccchhHHHHHHHh
Q 001846 209 LTRPFRLLGSHHLGVVLTFPVYKSKLPPRSTVEERIKATAGYIGGPFDVESLVENLLG 266 (1006)
Q Consensus 209 lt~p~~l~~~~~~g~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll~ 266 (1006)
+|.|+.=..++++-+.+..|||..+ ..+.|.+++.++++.|.+.+..
T Consensus 1 ~s~py~~~~~~~~vi~~s~pi~~~~-----------g~~~Gvv~~di~l~~l~~~i~~ 47 (81)
T PF02743_consen 1 WSEPYVDAATGQPVITISVPIYDDD-----------GKIIGVVGIDISLDQLSEIISN 47 (81)
T ss_dssp E---EEETTTTEEEEEEEEEEEETT-----------TEEEEEEEEEEEHHHHHHHHTT
T ss_pred CCcCEEeCCCCcEEEEEEEEEECCC-----------CCEEEEEEEEeccceeeeEEEe
Confidence 4778887777889999999999843 4458999999999987664433
No 345
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.09 E-value=3.3e+02 Score=24.82 Aligned_cols=11 Identities=27% Similarity=0.911 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 001846 342 VIGLLVGYILY 352 (1006)
Q Consensus 342 ~i~ll~~~~~~ 352 (1006)
+++++++|..+
T Consensus 13 v~~~i~~y~~~ 23 (87)
T PF10883_consen 13 VVALILAYLWW 23 (87)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 346
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=35.04 E-value=80 Score=35.02 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCcEE--EEecCCCHHhHHHHHHCCCCEEE-----eCCCCHHHHHHHHHHHh
Q 001846 954 HLPIL--AMTADVIHATFDECLKCGMDGYV-----SKPFEEENLYRELAKFF 998 (1006)
Q Consensus 954 ~~PII--alTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~~~l 998 (1006)
++||| +.-.-.++++...++++|+|++. .|.-++.+..+.+.+.+
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai 248 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEAT 248 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHH
Confidence 58998 77777799999999999999984 45556666555554443
No 347
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=34.88 E-value=2.4e+02 Score=29.12 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=51.9
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcC--CeEEEeCCHHHHHHHhcC-CCCCcEEEEeCCCCCCCHHHHHHHHHh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFG--ATVECAASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRIRQ 928 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G--~~v~~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~e~~~~IR~ 928 (1006)
.+++|+.+++..+..+..+++.+| |.|..+.+-+++++.++. ...+.|+..+.+.+. ....||+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~-----~~~~ir~ 98 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD-----VEPEIRE 98 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc-----hHHHHHH
Confidence 479999999999999999999998 569999999999998863 234778888887766 4555654
No 348
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.29 E-value=3.3e+02 Score=30.36 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=47.1
Q ss_pred EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 886 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
.+.+.|-+||.+.+.. .+|+|++|= |+..+=-++...++. ..+|..++...
T Consensus 197 eVEv~slee~~ea~~~--gaDiImLDn-~s~e~l~~av~~~~~--------------------------~~~leaSGgI~ 247 (281)
T PRK06543 197 EVEVDRLDQIEPVLAA--GVDTIMLDN-FSLDDLREGVELVDG--------------------------RAIVEASGNVN 247 (281)
T ss_pred EEEeCCHHHHHHHHhc--CCCEEEECC-CCHHHHHHHHHHhCC--------------------------CeEEEEECCCC
Confidence 3568999999998864 489999994 333222333333321 12788899999
Q ss_pred HHhHHHHHHCCCCEE
Q 001846 966 HATFDECLKCGMDGY 980 (1006)
Q Consensus 966 ~~~~~~~~~aG~d~y 980 (1006)
.+...+..+.|+|-.
T Consensus 248 ~~ni~~yA~tGVD~I 262 (281)
T PRK06543 248 LNTVGAIASTGVDVI 262 (281)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999954
No 349
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=33.78 E-value=2.1e+02 Score=26.85 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=42.8
Q ss_pred cCcHHHHHHHHHHHhhcCCeEEEeC---CHHHHHHHhcCCCCCcEEEEeCCCCCCC-HHHHHHHHHh
Q 001846 866 DDNGVNRMVAAGALKKFGATVECAA---SAKAALDKLQSPHCFDACFMDIQMPEMD-GFEATRRIRQ 928 (1006)
Q Consensus 866 DDn~~n~~~l~~~L~~~G~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~md-G~e~~~~IR~ 928 (1006)
|-.+.....+..+|++.|+++.... ...+.++.+.. ..||+|.+.+.+.... .++.++++|+
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-EDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-cCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5566677888999999999988653 44555565555 5699999998776532 3444555554
No 350
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=33.34 E-value=3.3e+02 Score=28.34 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=50.4
Q ss_pred HHHHHHhhcCCeEEE---eCCHHHHHHHhcCCCCCcEEEEeCCCCCCCH-------HHHHHHHHhhhchhhhhhccCCCC
Q 001846 874 VAAGALKKFGATVEC---AASAKAALDKLQSPHCFDACFMDIQMPEMDG-------FEATRRIRQMESKANEQMMNGGSS 943 (1006)
Q Consensus 874 ~l~~~L~~~G~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-------~e~~~~IR~~e~~~~~~~~~~~~~ 943 (1006)
.....+++.|..+.. ..+..+.++.+.. ..|.|+.+-.-|+..| ++.++++|++-.
T Consensus 95 ~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~--~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~------------ 160 (210)
T TIGR01163 95 RLLQLIKDLGAKAGIVLNPATPLEFLEYVLP--DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID------------ 160 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHHh--hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH------------
Confidence 333556666765433 3345666666643 2576766554454444 344455554321
Q ss_pred cCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeC
Q 001846 944 VDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSK 983 (1006)
Q Consensus 944 ~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~K 983 (1006)
....++||++ .+-...+...++.+.|+|.++.-
T Consensus 161 ------~~~~~~~i~v-~GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 161 ------ENGLSILIEV-DGGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred ------hcCCCceEEE-ECCcCHHHHHHHHHcCCCEEEEC
Confidence 0122467644 44556788889999999988653
No 351
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.87 E-value=2.6e+02 Score=29.84 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHhhcCC-eEEEeCCHHHHHHHhcC--CCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCC
Q 001846 877 GALKKFGA-TVECAASAKAALDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953 (1006)
Q Consensus 877 ~~L~~~G~-~v~~a~~g~eAl~~l~~--~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~ 953 (1006)
..|.+.+. -|.-..+.++|++..+. ...+++| .+-|-.-+|+++++.+|+.- +
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~----------------------p 65 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEV----------------------P 65 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHC----------------------C
Confidence 34444443 34456677777665432 1235554 33344447888888888521 1
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~ 993 (1006)
++ +|..-.-.+.++.+.+.++|++ |+.-|.--.++.+.
T Consensus 66 ~~-~IGAGTVl~~~~a~~a~~aGA~-FivsP~~~~~vi~~ 103 (212)
T PRK05718 66 EA-LIGAGTVLNPEQLAQAIEAGAQ-FIVSPGLTPPLLKA 103 (212)
T ss_pred CC-EEEEeeccCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 22 2222223445777888888888 55556443344433
No 352
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.86 E-value=4.5e+02 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001846 338 FFLFVIGLLVGYILYGAAI 356 (1006)
Q Consensus 338 ~~~~~i~ll~~~~~~~~~~ 356 (1006)
++.+++|+++|+++.+...
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455667777776655443
No 353
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=32.52 E-value=43 Score=35.17 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=37.5
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
|||||.....-.-+...|++.|+++.+..+.+..++.+.. ..||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN-MKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh-CCCCEEEE
Confidence 8999999999999999999999999888776544444443 35887776
No 354
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.49 E-value=1.6e+02 Score=33.04 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=45.3
Q ss_pred EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCH
Q 001846 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966 (1006)
Q Consensus 887 ~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~ 966 (1006)
..+.|.+||.+.+.. ..|+|.+| +|...+=-++.+.+|+ ...++| +..++..+.
T Consensus 201 VEv~tleea~eA~~~--GaD~I~LD-n~~~e~l~~av~~~~~----------------------~~~~i~-leAsGGIt~ 254 (288)
T PRK07428 201 VETETLEQVQEALEY--GADIIMLD-NMPVDLMQQAVQLIRQ----------------------QNPRVK-IEASGNITL 254 (288)
T ss_pred EECCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHHHHh----------------------cCCCeE-EEEECCCCH
Confidence 457899999998864 48999999 3322211222333322 122455 455677789
Q ss_pred HhHHHHHHCCCCEEE
Q 001846 967 ATFDECLKCGMDGYV 981 (1006)
Q Consensus 967 ~~~~~~~~aG~d~yl 981 (1006)
+...+..+.|+|...
T Consensus 255 ~ni~~ya~tGvD~Is 269 (288)
T PRK07428 255 ETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHcCCCEEE
Confidence 999999999999764
No 355
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.39 E-value=2.9e+02 Score=25.72 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=27.1
Q ss_pred CHHhHHHHHHCCCCEEEeCCC--CHHHHHHHHHHHhc
Q 001846 965 IHATFDECLKCGMDGYVSKPF--EEENLYRELAKFFK 999 (1006)
Q Consensus 965 ~~~~~~~~~~aG~d~yl~KP~--~~~~L~~~l~~~l~ 999 (1006)
..+....|+++|.+=|+-||+ +.+++.+.++..-+
T Consensus 75 h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 75 HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 345567899999999999998 88888777665543
No 356
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=32.21 E-value=2.3e+02 Score=36.05 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=70.6
Q ss_pred HHHHHHhhcCCeEEE--eCCHHHHHHHhcCCCCCcEEEEeCCCC-C----CCHHHHHHHHHhhhchhhhhhccCCCCcCC
Q 001846 874 VAAGALKKFGATVEC--AASAKAALDKLQSPHCFDACFMDIQMP-E----MDGFEATRRIRQMESKANEQMMNGGSSVDG 946 (1006)
Q Consensus 874 ~l~~~L~~~G~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi~MP-~----mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~ 946 (1006)
..-..|++.|+.+.. +.+|...+..+.. -++|.|=+|..+- . -....+++.|..+-.
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~-l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 745 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVS-LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQ--------------- 745 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhh-CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHH---------------
Confidence 344568899998765 5677788887775 4599999986441 1 112334444443321
Q ss_pred CcccCCCCCcEEEEecCCCHHhHHHHHHCCCC----EEEeCCCCHHHHHHHHHHHh
Q 001846 947 TAKRDELHLPILAMTADVIHATFDECLKCGMD----GYVSKPFEEENLYRELAKFF 998 (1006)
Q Consensus 947 ~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~~L~~~l~~~l 998 (1006)
..++.+| .++-.+.+....+.+.|+| .|+.||...++|...|+++.
T Consensus 746 -----~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~ 795 (799)
T PRK11359 746 -----SLNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVL 795 (799)
T ss_pred -----HCCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhcc
Confidence 1245555 4566778888889999998 35899999999999888773
No 357
>PRK12704 phosphodiesterase; Provisional
Probab=31.79 E-value=40 Score=41.00 Aligned_cols=44 Identities=9% Similarity=-0.084 Sum_probs=37.5
Q ss_pred cEEEEecCCCHH--hHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 956 PILAMTADVIHA--TFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 956 PIIalTa~~~~~--~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
.+|++|+..... ....+++.|+.|+..||+.+++++..+.+-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 388899877665 78889999999999999999999988877553
No 358
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=31.69 E-value=1.9e+02 Score=32.34 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=50.3
Q ss_pred eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCC
Q 001846 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964 (1006)
Q Consensus 885 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~ 964 (1006)
..+.+.+-+||.+.++. .+|+|++| +|+.-+=-++.+.+++. .+ -.++..++..
T Consensus 192 IeVEv~tleqa~ea~~a--gaDiI~LD-n~~~e~l~~av~~~~~~----------------------~~-~~~leaSGGI 245 (284)
T PRK06096 192 IVVEADTPKEAIAALRA--QPDVLQLD-KFSPQQATEIAQIAPSL----------------------AP-HCTLSLAGGI 245 (284)
T ss_pred EEEECCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHHhhcc----------------------CC-CeEEEEECCC
Confidence 34457899999998864 48999999 45444334444444321 11 2478899999
Q ss_pred CHHhHHHHHHCCCCEEE
Q 001846 965 IHATFDECLKCGMDGYV 981 (1006)
Q Consensus 965 ~~~~~~~~~~aG~d~yl 981 (1006)
..+...+..+.|+|-..
T Consensus 246 ~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 246 NLNTLKNYADCGIRLFI 262 (284)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999999654
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=30.85 E-value=5e+02 Score=29.76 Aligned_cols=107 Identities=11% Similarity=0.168 Sum_probs=57.9
Q ss_pred cceEEEecCcH---HHHHHHHHHHhhcCCeEEEeCCH-------HHHHHHhcCCCCCcEEEEeCCCCCCC--HHHHHHHH
Q 001846 859 GKKILVVDDNG---VNRMVAAGALKKFGATVECAASA-------KAALDKLQSPHCFDACFMDIQMPEMD--GFEATRRI 926 (1006)
Q Consensus 859 ~~~ILvVDDn~---~n~~~l~~~L~~~G~~v~~a~~g-------~eAl~~l~~~~~~DlIlmDi~MP~md--G~e~~~~I 926 (1006)
+.+|++++-|. -....+.......|..+.....+ .+|++.... ..+|+||+|-- +.. -.+++.++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~-~~~DvVLIDTa--Gr~~~~~~lm~eL 244 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA-RGIDVVLIDTA--GRMHTDANLMDEL 244 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh-CCCCEEEEECC--CccCCcHHHHHHH
Confidence 34787777652 23344555566677766654433 244555444 45899999974 332 24455666
Q ss_pred HhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHH--H--HCCCCEEEeCCCC
Q 001846 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC--L--KCGMDGYVSKPFE 986 (1006)
Q Consensus 927 R~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~--~--~aG~d~yl~KP~~ 986 (1006)
+.+... ..++.-++++.|....+....+ + ..|.++.|.-=++
T Consensus 245 ~~i~~~------------------~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 245 KKIVRV------------------TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHHHh------------------hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 554221 1123446666665554444332 2 3688887543333
No 360
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.44 E-value=6e+02 Score=25.94 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001846 343 IGLLVGYILYGAAI 356 (1006)
Q Consensus 343 i~ll~~~~~~~~~~ 356 (1006)
+.+++.+++|....
T Consensus 31 l~~lL~~~l~kpi~ 44 (175)
T PRK14472 31 VLLILKKIAWGPIL 44 (175)
T ss_pred HHHHHHHHhHHHHH
Confidence 33334444544433
No 361
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.32 E-value=4.4e+02 Score=31.25 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=60.5
Q ss_pred cceEEEecCcHHH---HHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCH--HHHHHHHHhhhchh
Q 001846 859 GKKILVVDDNGVN---RMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDG--FEATRRIRQMESKA 933 (1006)
Q Consensus 859 ~~~ILvVDDn~~n---~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~e~~~ 933 (1006)
+.+|.+|+-|+-- ...+..+-+..|..+..+.+..+....+.....+|+||+|. |++.. ...+..++++-..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~- 327 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEF- 327 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhc-
Confidence 4578888877631 22344444456777777777776555554434589999996 33322 2233444432110
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHH----HCCCCEEEeCCCCH
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL----KCGMDGYVSKPFEE 987 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~----~aG~d~yl~KP~~~ 987 (1006)
.....-..+++++.....+..+.. ..|.+.+|.--++.
T Consensus 328 ----------------~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDe 369 (424)
T PRK05703 328 ----------------SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDE 369 (424)
T ss_pred ----------------cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccc
Confidence 001122377788877766655443 44777665433443
No 362
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=30.13 E-value=5.1e+02 Score=29.78 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=58.9
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccC
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNG 940 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~ 940 (1006)
||=|-+|...-.+.++ +++..|....++..-.-..+-. .+|-.| +++++.||+.
T Consensus 147 KIRI~~d~~kTvd~ak-~~e~aG~~~ltVHGRtr~~kg~-------------~~~pad-~~~i~~v~~~----------- 200 (358)
T KOG2335|consen 147 KIRIFVDLEKTVDYAK-MLEDAGVSLLTVHGRTREQKGL-------------KTGPAD-WEAIKAVREN----------- 200 (358)
T ss_pred EEEecCcHHHHHHHHH-HHHhCCCcEEEEecccHHhcCC-------------CCCCcC-HHHHHHHHHh-----------
Confidence 6777788888887776 6778899888776554332211 223333 7899999862
Q ss_pred CCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHH-CCCCEEEe
Q 001846 941 GSSVDGTAKRDELHLPILAMTADVIHATFDECLK-CGMDGYVS 982 (1006)
Q Consensus 941 ~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~-aG~d~yl~ 982 (1006)
.+.+||||=-.-...++..+|++ -|+|+.++
T Consensus 201 -----------~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 201 -----------VPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred -----------CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 12377776655556779999999 89999876
No 363
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.03 E-value=2.2e+02 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001846 334 LTTAFFLFVIGLLVGYILYGAAIHIVKVEDD 364 (1006)
Q Consensus 334 ~~~~~~~~~i~ll~~~~~~~~~~~~~~~~~~ 364 (1006)
++..++.++||++++.+.........+++++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~q~~l~~e 33 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQKQAKLEQE 33 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 4445555666777766665555444444433
No 364
>PRK00811 spermidine synthase; Provisional
Probab=29.87 E-value=2.1e+02 Score=31.92 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=40.2
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcC------CeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCC
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFG------ATV-ECAASAKAALDKLQSPHCFDACFMDIQMPE 916 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G------~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~ 916 (1006)
.+|.+||=|+...++++..|...+ -.+ ....|+.+.+.. ....||+|++|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 479999999999999999887532 223 346777776654 2346999999986664
No 365
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.65 E-value=3.1e+02 Score=29.22 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=52.2
Q ss_pred HHHhhcCC-eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCC
Q 001846 877 GALKKFGA-TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955 (1006)
Q Consensus 877 ~~L~~~G~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1006)
..|.+.+. -|....+.++|+...+.-..-.+=++.+-|-.-++++++++|++.-+. .++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~-------------------~p~- 67 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKD-------------------DPE- 67 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCC-------------------CCC-
Confidence 34444443 344556666666554321111233446666667788888888752100 001
Q ss_pred cEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Q 001846 956 PILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993 (1006)
Q Consensus 956 PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~ 993 (1006)
-+|..-.-.+.++.+.+.++|++ |+.-|.-..++.+.
T Consensus 68 ~~vGaGTV~~~~~~~~a~~aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 68 VLIGAGTVLDAVTARLAILAGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred eEEeeeeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 13444344567778889999998 55556555555443
No 366
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=29.50 E-value=6.2e+02 Score=25.80 Aligned_cols=56 Identities=20% Similarity=0.067 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 001846 345 LLVGYILYGAAIHI-----VKVEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGI 400 (1006)
Q Consensus 345 ll~~~~~~~~~~~~-----~~~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I 400 (1006)
+++.+++|..+..+ ..+.+.+.+.++.+.+++.....-.+-++....|-..=+...
T Consensus 34 ~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a 94 (174)
T PRK07352 34 GLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADA 94 (174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444333 233344444444444444443333334454444444444333
No 367
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=29.38 E-value=3e+02 Score=30.61 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=46.6
Q ss_pred EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCH
Q 001846 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966 (1006)
Q Consensus 887 ~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~ 966 (1006)
+.++|.+|+.++++. .+|+|++|=.-|+ .=-++.+.++ ...-.++-.|+..+.
T Consensus 193 VEvesle~~~eAl~a--gaDiImLDNm~~e-~~~~av~~l~------------------------~~~~~~lEaSGgIt~ 245 (280)
T COG0157 193 VEVESLEEAEEALEA--GADIIMLDNMSPE-ELKEAVKLLG------------------------LAGRALLEASGGITL 245 (280)
T ss_pred EEcCCHHHHHHHHHc--CCCEEEecCCCHH-HHHHHHHHhc------------------------cCCceEEEEeCCCCH
Confidence 358999999999875 4899999943331 1122222221 012357889999999
Q ss_pred HhHHHHHHCCCCEE
Q 001846 967 ATFDECLKCGMDGY 980 (1006)
Q Consensus 967 ~~~~~~~~aG~d~y 980 (1006)
+...+..+.|+|-+
T Consensus 246 ~ni~~yA~tGVD~I 259 (280)
T COG0157 246 ENIREYAETGVDVI 259 (280)
T ss_pred HHHHHHhhcCCCEE
Confidence 99999999999844
No 368
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=28.85 E-value=1.2e+02 Score=31.42 Aligned_cols=47 Identities=15% Similarity=0.375 Sum_probs=32.1
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEE
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACF 909 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIl 909 (1006)
+||||+|-....-.-+..+|++.|+++........-.+.+. .+|.|+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~---~~d~iI 48 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE---NFSHIL 48 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc---cCCEEE
Confidence 58999997777666799999999998877663221122232 367666
No 369
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.82 E-value=1.6e+02 Score=33.59 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCCCCH-HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHH
Q 001846 893 KAALDKLQSPHCFDACFMDIQMPEMDG-FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE 971 (1006)
Q Consensus 893 ~eAl~~l~~~~~~DlIlmDi~MP~mdG-~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~ 971 (1006)
+++.++++..-..|+|.+|+.-|..+. .|++++||+. .+.+|||+=.. .+.++...
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~----------------------~p~~~vi~g~V-~t~e~a~~ 156 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH----------------------LPETFVIAGNV-GTPEAVRE 156 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh----------------------CCCCeEEEEec-CCHHHHHH
Confidence 555555543213599999999865433 4567777752 23477777322 26788899
Q ss_pred HHHCCCCEEE
Q 001846 972 CLKCGMDGYV 981 (1006)
Q Consensus 972 ~~~aG~d~yl 981 (1006)
+.++|+|...
T Consensus 157 l~~aGad~i~ 166 (326)
T PRK05458 157 LENAGADATK 166 (326)
T ss_pred HHHcCcCEEE
Confidence 9999999865
No 370
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=28.59 E-value=7.3e+02 Score=26.28 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001846 361 VEDDFHKMQELKVRAEAADV 380 (1006)
Q Consensus 361 ~~~~~~~l~~~k~~ae~a~~ 380 (1006)
+..++.+.++.+.+++....
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~ 108 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVA 108 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444454444444433
No 371
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=28.50 E-value=1.3e+02 Score=33.52 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCcEE--EEecCCCHHhHHHHHHCCCCEEE-----eCCCCHHHHHHHHHHHhc
Q 001846 954 HLPIL--AMTADVIHATFDECLKCGMDGYV-----SKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 954 ~~PII--alTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~~~l~ 999 (1006)
++||| +.-.-.++++...++++|+|+++ .|.-++.+..+.+.+.+.
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 58998 77666699999999999999984 344466666555555443
No 372
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.48 E-value=2.9e+02 Score=34.57 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=59.4
Q ss_pred cceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHH-HHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKFGATVECAASAKA-ALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~e-Al~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
+..+.++|.|+...+.+ ++.|+.+...+-.+. .++...- +..|+++.-..=++. -..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi-~~A~~vvv~~~d~~~-n~~i~~~ar~~-------- 488 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGA-AKAEVLINAIDDPQT-SLQLVELVKEH-------- 488 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhcCC-CcCCEEEEEeCCHHH-HHHHHHHHHHh--------
Confidence 34689999998876544 446888776543333 3444433 347888776643333 35566677753
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl 981 (1006)
.++++|++-+.+ .+...+..++|+|..+
T Consensus 489 --------------~p~~~iiaRa~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 --------------FPHLQIIARARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEe
Confidence 346788887654 5667788899999764
No 373
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.99 E-value=4e+02 Score=27.25 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=54.4
Q ss_pred HHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCC-------CHHHHHHHHHhhhchhhhhhccCCCCcCCC
Q 001846 875 AAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEM-------DGFEATRRIRQMESKANEQMMNGGSSVDGT 947 (1006)
Q Consensus 875 l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~m-------dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~ 947 (1006)
.+..+.....--..+.|.+|+.+..+. ..|.|+.----|-- -|++..+++++.
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~~--g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~------------------ 147 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEEL--GADYVFLGPVFPTSSKPGAPPLGLDGLREIARA------------------ 147 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHHC--TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH------------------
T ss_pred hhhhcccceEEEeecCcHHHHHHhhhc--CCCEEEECCccCCCCCccccccCHHHHHHHHHh------------------
Confidence 445555544445578899997766543 47999887654433 488888888763
Q ss_pred cccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEE
Q 001846 948 AKRDELHLPILAMTADVIHATFDECLKCGMDGYV 981 (1006)
Q Consensus 948 ~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl 981 (1006)
.++||+|+-+- +.+...++.++|++++-
T Consensus 148 -----~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 148 -----SPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp -----TSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred -----CCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 25899999764 57778889999999874
No 374
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.98 E-value=6.3e+02 Score=28.02 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=56.3
Q ss_pred ceEEEecCcHH---HHHHHHHHHhhcCCeEEEeCCHHH---HHHHhcCCCCCcEEEEeCCCCCCC--HHHHHHHHHhhhc
Q 001846 860 KKILVVDDNGV---NRMVAAGALKKFGATVECAASAKA---ALDKLQSPHCFDACFMDIQMPEMD--GFEATRRIRQMES 931 (1006)
Q Consensus 860 ~~ILvVDDn~~---n~~~l~~~L~~~G~~v~~a~~g~e---Al~~l~~~~~~DlIlmDi~MP~md--G~e~~~~IR~~e~ 931 (1006)
.++.+++=|.. ....++...+..|+.+..+.+..+ +++.+.....+|+||+|. |+.. .-+.++++++...
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt--~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCcCCHHHHHHHHHHHh
Confidence 35555554321 233445555667888887776643 444444334599999996 3332 2344555554321
Q ss_pred hhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHH----HHCCCCEEEeCCCC
Q 001846 932 KANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC----LKCGMDGYVSKPFE 986 (1006)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~----~~aG~d~yl~KP~~ 986 (1006)
. ..+.-.+++++|.....+..+. -..+.++.|.-=++
T Consensus 182 ~------------------~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 182 Q------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred h------------------hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 1 1112246777776555443322 34577777543333
No 375
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.84 E-value=5.7e+02 Score=28.94 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=61.1
Q ss_pred ceEEEe--cCcHH---HHHHHHHHHhhcCCeEEEeCCHHHHHHH----h------------c-CCCCCcEEEEeCCCCCC
Q 001846 860 KKILVV--DDNGV---NRMVAAGALKKFGATVECAASAKAALDK----L------------Q-SPHCFDACFMDIQMPEM 917 (1006)
Q Consensus 860 ~~ILvV--DDn~~---n~~~l~~~L~~~G~~v~~a~~g~eAl~~----l------------~-~~~~~DlIlmDi~MP~m 917 (1006)
++|+|+ -+.+. ....+...|++.|+++....+....+.. . . ....+|+|+. =+-
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 357776 23333 3455566778889998876543332210 0 0 0112566654 267
Q ss_pred CHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Q 001846 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKF 997 (1006)
Q Consensus 918 dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 997 (1006)
|| .+++..|... ...+||+.+-. |=-+||+ .++++++.++|.++
T Consensus 82 DG-T~L~aar~~~---------------------~~~~PilGIN~-------------G~lGFL~-~~~~~~~~~~l~~i 125 (306)
T PRK03372 82 DG-TILRAAELAR---------------------AADVPVLGVNL-------------GHVGFLA-EAEAEDLDEAVERV 125 (306)
T ss_pred CH-HHHHHHHHhc---------------------cCCCcEEEEec-------------CCCceec-cCCHHHHHHHHHHH
Confidence 88 3445555421 22589998853 6678998 48899999999998
Q ss_pred hcc
Q 001846 998 FKS 1000 (1006)
Q Consensus 998 l~~ 1000 (1006)
++.
T Consensus 126 ~~g 128 (306)
T PRK03372 126 VDR 128 (306)
T ss_pred HcC
Confidence 864
No 376
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.79 E-value=2.8e+02 Score=29.39 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=18.2
Q ss_pred CCCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Q 001846 963 DVIHATFDECLKCGMDGYVSKPFEEENLYRE 993 (1006)
Q Consensus 963 ~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~ 993 (1006)
-.+.++.+.+.++|++ |+.-|.--.++.+.
T Consensus 67 Vl~~~~a~~a~~aGA~-FivsP~~~~~v~~~ 96 (204)
T TIGR01182 67 VLNPEQLRQAVDAGAQ-FIVSPGLTPELAKH 96 (204)
T ss_pred CCCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 3456677788888887 44446544444433
No 377
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=27.56 E-value=5.3e+02 Score=27.96 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCcEEEEecCCCHHhHHHHHHC-CCCEEEe------CCCCHHHHHHHHHH
Q 001846 954 HLPILAMTADVIHATFDECLKC-GMDGYVS------KPFEEENLYRELAK 996 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~a-G~d~yl~------KP~~~~~L~~~l~~ 996 (1006)
.+|||+--.-.+.++..++++. |+++.+. .=++.+++.+.+.+
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 5899999988899999999975 9998876 44666776666543
No 378
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=27.54 E-value=59 Score=39.94 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.2
Q ss_pred EEEEecCCCCChhHHhhhccccc
Q 001846 606 VCVEDTGIGIPLSAQERVFMPFM 628 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~~iF~pF~ 628 (1006)
|+|.|+|.||++...+-+-.+++
T Consensus 52 IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 52 IEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred EEEecCCCCCCccchhhhhhhhh
Confidence 89999999999887666555544
No 379
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=27.37 E-value=3.6e+02 Score=28.49 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=29.1
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEEE--eCCCCHHHHHHHHHHH
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGYV--SKPFEEENLYRELAKF 997 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~yl--~KP~~~~~L~~~l~~~ 997 (1006)
.+||+...--.+....+.|.++|+|..+ ..-+..+.+.+.+..+
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 5888876544556678889999999987 3223445555555443
No 380
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=27.35 E-value=3.8e+02 Score=28.81 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=53.7
Q ss_pred HHhhcCCeEEE----------eCCHHHHHHHhcCCCCCcEEEEeCCCCCC----------CHHHHHHHHHhhhchhhhhh
Q 001846 878 ALKKFGATVEC----------AASAKAALDKLQSPHCFDACFMDIQMPEM----------DGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 878 ~L~~~G~~v~~----------a~~g~eAl~~l~~~~~~DlIlmDi~MP~m----------dG~e~~~~IR~~e~~~~~~~ 937 (1006)
+|++.|..|.. ..--.+|++++.+ ..+|+++++.-||-- +--|+++-++..-
T Consensus 144 ~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~-~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR------- 215 (275)
T COG1856 144 LLKENGIRVVPHITIGLDFGKIHGEFKAIDILVN-YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYAR------- 215 (275)
T ss_pred HHHHcCceeceeEEEEeccCcccchHHHHHHHhc-CCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHH-------
Confidence 46667765432 3456789999986 569999999999842 3345555555421
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhH----HHHHHCCCCEEEeCCCC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATF----DECLKCGMDGYVSKPFE 986 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~----~~~~~aG~d~yl~KP~~ 986 (1006)
...++ ||+.=-+...-+.+ .++..+|.| -|++|..
T Consensus 216 ------------~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd-~It~P~~ 254 (275)
T COG1856 216 ------------KKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVD-RITFPPR 254 (275)
T ss_pred ------------HhCCC-CeeEeecCcCchhHHHHHHHHHHcCCc-eeecCCc
Confidence 11234 66555554444433 356778887 5788854
No 381
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=27.24 E-value=1.2e+02 Score=32.78 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=20.6
Q ss_pred eEEecHHHHHHHHHHHHHHHhccCC
Q 001846 490 FVLGDPGRFRQIITNLVGNSVKFTE 514 (1006)
Q Consensus 490 ~v~gD~~rl~QIl~NLl~NAiKfT~ 514 (1006)
.+.|||.|..+|-. |++|+-+-..
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~ 44 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVAS 44 (248)
T ss_pred EecCCHHHHHHHHH-Hhccchhhhh
Confidence 56799999999988 9999987664
No 382
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=27.14 E-value=4e+02 Score=31.68 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=64.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhcc
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMN 939 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~ 939 (1006)
.+++||-|.+. +..++.+.+.......-.-+.++..+.+.. .|+.++=- ..+.=|+-+++.+-
T Consensus 291 ~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~---aDv~V~pS-~~E~~g~~vlEAmA------------ 353 (465)
T PLN02871 291 ARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS---GDVFVMPS-ESETLGFVVLEAMA------------ 353 (465)
T ss_pred cEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH---CCEEEECC-cccccCcHHHHHHH------------
Confidence 36888887654 344555554443333334455676666653 57776522 22333443444332
Q ss_pred CCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHC---CCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 940 GGSSVDGTAKRDELHLPILAMTADVIHATFDECLKC---GMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 940 ~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~a---G~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||+-...... +.++. |-++++..|-+.++|.++|.+++..
T Consensus 354 -------------~G~PVI~s~~gg~~----eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 354 -------------SGVPVVAARAGGIP----DIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred -------------cCCCEEEcCCCCcH----hhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 25899965443332 34444 8899999999999999999998864
No 383
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.06 E-value=6.5e+02 Score=25.20 Aligned_cols=19 Identities=5% Similarity=0.223 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001846 338 FFLFVIGLLVGYILYGAAI 356 (1006)
Q Consensus 338 ~~~~~i~ll~~~~~~~~~~ 356 (1006)
+.++++.+++.+++|....
T Consensus 13 inF~il~~iL~~f~~kpi~ 31 (159)
T PRK13461 13 INFIILLLILKHFFFDKIK 31 (159)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3333333344455554443
No 384
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=26.82 E-value=7.4e+02 Score=28.52 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=63.5
Q ss_pred eEEEecCcH--------HHHHHHHHHHhhcCCeEEEeC--CHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhh
Q 001846 861 KILVVDDNG--------VNRMVAAGALKKFGATVECAA--SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQME 930 (1006)
Q Consensus 861 ~ILvVDDn~--------~n~~~l~~~L~~~G~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e 930 (1006)
+++||.|.+ .....+..+.++.+-.+.... +.++..+.+.. .|++++=-...+.=|.-+++.+-
T Consensus 226 ~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~---aDv~v~pS~~~E~f~~~~lEAma--- 299 (380)
T PRK15484 226 KLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL---ADLVVVPSQVEEAFCMVAVEAMA--- 299 (380)
T ss_pred EEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh---CCEEEeCCCCccccccHHHHHHH---
Confidence 566775432 223344555555565555443 35565565543 58887633333333433333332
Q ss_pred chhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEE-EeCCCCHHHHHHHHHHHhcc
Q 001846 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGY-VSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~y-l~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||+...... .+.+..|.++| +..|.+.++|.++|.+++..
T Consensus 300 ----------------------~G~PVI~s~~gg~----~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 300 ----------------------AGKPVLASTKGGI----TEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred ----------------------cCCCEEEeCCCCc----HhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 2589987543332 34456688999 66899999999999998764
No 385
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=26.49 E-value=5.1e+02 Score=32.96 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=36.7
Q ss_pred ccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 858 ~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
.+++|||||-...+...+..+|++.|+.+.++.+... .+.... ..||.|++
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~-~~~~~~-~~~DgLIL 565 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA-EAAFDE-RRPDLVVL 565 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC-hhhhhh-cCCCEEEE
Confidence 5689999998877888999999999999887755421 112222 34887766
No 386
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.36 E-value=1.6e+02 Score=32.88 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=40.9
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEE------EeCCCCHHHHHHHHHHHhccCC
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGY------VSKPFEEENLYRELAKFFKSKP 1002 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~y------l~KP~~~~~L~~~l~~~l~~~~ 1002 (1006)
++|||+...-.+.++..+++++|+|.. +.-|.-..++.+.+.++++.+.
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcC
Confidence 589999998889999999999999865 4468778888888888887553
No 387
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.35 E-value=3.6e+02 Score=22.60 Aligned_cols=15 Identities=33% Similarity=0.917 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001846 337 AFFLFVIGLLVGYIL 351 (1006)
Q Consensus 337 ~~~~~~i~ll~~~~~ 351 (1006)
.++.+++|+++++++
T Consensus 24 il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 24 ILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555544
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.27 E-value=1.6e+02 Score=24.77 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=28.9
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 001846 385 FLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQICGKAL 430 (1006)
Q Consensus 385 Fla~vSHELRTPLn~I~g~~elL~~~~l~~~q~~~l~~i~~s~~~L 430 (1006)
-+...-||+.+=|+.|.|++++= -.++..+|++.+....+..
T Consensus 15 ~lR~~RHD~~NhLqvI~gllqlg----~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQLG----KYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999998752 2244556766665555544
No 389
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=26.15 E-value=11 Score=47.89 Aligned_cols=16 Identities=44% Similarity=0.713 Sum_probs=13.6
Q ss_pred EEEEecCCCCChhHHh
Q 001846 606 VCVEDTGIGIPLSAQE 621 (1006)
Q Consensus 606 i~V~DtG~GI~~e~~~ 621 (1006)
|+|+|+|.|||-+..+
T Consensus 163 ItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 163 VEISDNGRGIPCDVSE 178 (903)
T ss_pred EEEEeCCccccccccc
Confidence 8999999999986544
No 390
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.07 E-value=5.6e+02 Score=28.73 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCCeEEEeCCHHHHHHH----------h---c-CCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 872 RMVAAGALKKFGATVECAASAKAALDK----------L---Q-SPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 872 ~~~l~~~L~~~G~~v~~a~~g~eAl~~----------l---~-~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
...+...|++.|+++.......+.+.. . . ....+|+|+. =+-|| .+++..|...
T Consensus 18 ~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T~L~aa~~~~------- 85 (292)
T PRK01911 18 IQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDG-TFLRTATYVG------- 85 (292)
T ss_pred HHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcH-HHHHHHHHhc-------
Confidence 345556777889988875543322210 0 0 0113577665 36788 4555555431
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
...+||+.+-. |=-+||+ .++++++.+.|.++++..
T Consensus 86 --------------~~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 86 --------------NSNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred --------------CCCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 23689998753 6668887 689999999999988653
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.02 E-value=8.6e+02 Score=26.88 Aligned_cols=109 Identities=14% Similarity=0.221 Sum_probs=57.5
Q ss_pred cceEEEecCcH---HHHHHHHHHHhhcCCeEEEeCCH-------HHHHHHhcCCCCCcEEEEeCCCCCCCH--HHHHHHH
Q 001846 859 GKKILVVDDNG---VNRMVAAGALKKFGATVECAASA-------KAALDKLQSPHCFDACFMDIQMPEMDG--FEATRRI 926 (1006)
Q Consensus 859 ~~~ILvVDDn~---~n~~~l~~~L~~~G~~v~~a~~g-------~eAl~~l~~~~~~DlIlmDi~MP~mdG--~e~~~~I 926 (1006)
+++|+++|-|. .....++...+..|..+.....+ .+++..... ..||+||+|. |+... -....++
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~-~~~D~ViIDT--~G~~~~d~~~~~el 176 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA-RNIDVVLIDT--AGRLQNKVNLMDEL 176 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH-CCCCEEEEeC--CCCCcchHHHHHHH
Confidence 46899998654 12345555666777666544322 233433333 4599999997 33332 2334445
Q ss_pred HhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHH----HCCCCEEEe
Q 001846 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECL----KCGMDGYVS 982 (1006)
Q Consensus 927 R~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~----~aG~d~yl~ 982 (1006)
+++....... -...++-.++++.+....++...+. ..|.++.|.
T Consensus 177 ~~~~~~~~~~------------~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 177 KKIKRVIKKV------------DKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHhcc------------cCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 4432211000 0012344578888877665544432 257777754
No 392
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.90 E-value=7.6e+02 Score=30.07 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=60.5
Q ss_pred eEEEecCc---HHHHHHHHHHHhh-c-CCeEE--EeCCHHHHHHHhcCCCCCcEEEEeC--------------CCCCCCH
Q 001846 861 KILVVDDN---GVNRMVAAGALKK-F-GATVE--CAASAKAALDKLQSPHCFDACFMDI--------------QMPEMDG 919 (1006)
Q Consensus 861 ~ILvVDDn---~~n~~~l~~~L~~-~-G~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi--------------~MP~mdG 919 (1006)
.|+++|=- ..+..-.-..+++ + +..+. -+.+.++|....+. ..|.|..-+ -.|...-
T Consensus 262 d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a--GaD~i~vg~g~G~~~~t~~~~~~g~~~~~~ 339 (505)
T PLN02274 262 DVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA--GVDGLRVGMGSGSICTTQEVCAVGRGQATA 339 (505)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc--CcCEEEECCCCCccccCccccccCCCcccH
Confidence 46666632 2221122333343 4 34554 37888888887754 478886632 1233333
Q ss_pred HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 920 ~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
+..+.++.+ ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 340 i~~~~~~~~-----------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 340 VYKVASIAA-----------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHHHH-----------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 444444442 1258999999999999999999999998764
No 393
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=25.80 E-value=1.2e+02 Score=26.75 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=41.6
Q ss_pred eCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHh
Q 001846 889 AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968 (1006)
Q Consensus 889 a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~ 968 (1006)
|...++.++.+.....+.+-..||. +.-++.+ + -...+||+.+........
T Consensus 13 C~~a~~~L~~~~~~~~~~l~~vDI~----~d~~l~~---~----------------------Y~~~IPVl~~~~~~~~~~ 63 (81)
T PF05768_consen 13 CDEAKEILEEVAAEFPFELEEVDID----EDPELFE---K----------------------YGYRIPVLHIDGIRQFKE 63 (81)
T ss_dssp HHHHHHHHHHCCTTSTCEEEEEETT----TTHHHHH---H----------------------SCTSTSEEEETT-GGGCT
T ss_pred HHHHHHHHHHHHhhcCceEEEEECC----CCHHHHH---H----------------------hcCCCCEEEEcCcccccc
Confidence 3345555555554566899999997 3223222 1 123799998865322111
Q ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHH
Q 001846 969 FDECLKCGMDGYVSKPFEEENLYRELA 995 (1006)
Q Consensus 969 ~~~~~~aG~d~yl~KP~~~~~L~~~l~ 995 (1006)
.-.+.-||+.++|.+.|+
T Consensus 64 ---------~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 64 ---------QEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp ---------SEEEESSB-HHHHHHHHH
T ss_pred ---------cceeCCCCCHHHHHHHhC
Confidence 467788999999988764
No 394
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=25.69 E-value=87 Score=32.55 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=35.4
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
|||||.....-.-+..+|++.|++|..+.+.+--++.+.. ..||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ-LAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-cCCCeEEE
Confidence 8999999988888999999999999988866422333333 24676654
No 395
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=25.60 E-value=2.2e+02 Score=29.69 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.6
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
|+|||=..-|...+.+.|++.|+.+....+..+ +. .+|.|++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l~---~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----IL---SADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----hc---cCCEEEE
Confidence 578888888999999999999999999887553 22 3898887
No 396
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.59 E-value=5.6e+02 Score=26.47 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=49.2
Q ss_pred HHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCH-------HHHHHHHHhhhchhhhhhccCCCCcC
Q 001846 876 AGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMDG-------FEATRRIRQMESKANEQMMNGGSSVD 945 (1006)
Q Consensus 876 ~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-------~e~~~~IR~~e~~~~~~~~~~~~~~~ 945 (1006)
...+++.|..+... .+..+.++.+.. . .|.++.+...|+-+| .+..+++|+.-.+
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~------------- 162 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLD-E-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPE------------- 162 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHh-h-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHh-------------
Confidence 34445566653322 223455555543 2 687777765566544 3444555543210
Q ss_pred CCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 946 ~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
..+++||++ .+-...+...++.++|+|+++.
T Consensus 163 -----~~~~~pi~v-~GGI~~env~~~~~~gad~iiv 193 (211)
T cd00429 163 -----NNLNLLIEV-DGGINLETIPLLAEAGADVLVA 193 (211)
T ss_pred -----cCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 123468654 4456678888999999999875
No 397
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.28 E-value=3.1e+02 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=17.1
Q ss_pred CCCHHhHHHHHHCCCCEEEeCCCCHHHHHH
Q 001846 963 DVIHATFDECLKCGMDGYVSKPFEEENLYR 992 (1006)
Q Consensus 963 ~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~ 992 (1006)
-.+.++.++|.++|++ |+.-|.--.++.+
T Consensus 63 Vl~~e~a~~ai~aGA~-FivSP~~~~~vi~ 91 (201)
T PRK06015 63 ILNAKQFEDAAKAGSR-FIVSPGTTQELLA 91 (201)
T ss_pred CcCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 3456667777777777 4444544444443
No 398
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=25.20 E-value=4.1e+02 Score=30.10 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=65.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe--EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT--VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQM 937 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~--v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~ 937 (1006)
.+++++.|.+. +..+...++..|.. +.......+..+.+.. .|+.++= ...+-=|.-+++.+.
T Consensus 230 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~---adi~v~p-S~~Eg~~~~~lEAma---------- 294 (374)
T TIGR03088 230 LRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA---LDLFVLP-SLAEGISNTILEAMA---------- 294 (374)
T ss_pred eEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh---cCEEEec-cccccCchHHHHHHH----------
Confidence 46888877654 35567777777653 4333333344444433 5776642 122333445555543
Q ss_pred ccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 938 MNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||+--... ..+.+..|-++++..|-+.++|.++|.+++..
T Consensus 295 ---------------~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 295 ---------------SGLPVIATAVGG----NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred ---------------cCCCEEEcCCCC----cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 258998733222 33456678889999999999999999988753
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.04 E-value=6.8e+02 Score=29.65 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=57.9
Q ss_pred cceEEEecCcHH---HHHHHHHHHhhcCCeEEEeCCHHHHHHH---hcCCCCCcEEEEeCCCCCCCH--HHHHHHHHhhh
Q 001846 859 GKKILVVDDNGV---NRMVAAGALKKFGATVECAASAKAALDK---LQSPHCFDACFMDIQMPEMDG--FEATRRIRQME 930 (1006)
Q Consensus 859 ~~~ILvVDDn~~---n~~~l~~~L~~~G~~v~~a~~g~eAl~~---l~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~e 930 (1006)
++++++++=|.. -...++..-+..|+.+..+.+..+..+. ++....+|+||+|- |+.+- .+.++++++.-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT--aGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETM 346 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC--ccccCcCHHHHHHHHHHH
Confidence 457887776543 2334444445568888777766554443 33323589999995 33322 34455554432
Q ss_pred chhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHH----HHCCCCEEEeCCCC
Q 001846 931 SKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDEC----LKCGMDGYVSKPFE 986 (1006)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~----~~aG~d~yl~KP~~ 986 (1006)
.. ..++-.+++++|.....+.... -..|.+++|.-=+|
T Consensus 347 k~------------------~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 347 GQ------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred hh------------------cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 11 1123346667775554442222 24588888653344
No 400
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.02 E-value=9.8e+02 Score=26.61 Aligned_cols=66 Identities=9% Similarity=0.052 Sum_probs=46.6
Q ss_pred EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCH
Q 001846 887 ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966 (1006)
Q Consensus 887 ~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~ 966 (1006)
..+.+.+||.+..+. ..|.|.+|- =|.+.++++++.- ..++|+.| .+....
T Consensus 193 vsv~tleea~~A~~~--gaDyI~lD~-----~~~e~l~~~~~~~---------------------~~~i~i~A-iGGIt~ 243 (277)
T PRK08072 193 VETETEEQVREAVAA--GADIIMFDN-----RTPDEIREFVKLV---------------------PSAIVTEA-SGGITL 243 (277)
T ss_pred EEeCCHHHHHHHHHc--CCCEEEECC-----CCHHHHHHHHHhc---------------------CCCceEEE-ECCCCH
Confidence 467899998887753 489999983 2457777776531 12355444 456788
Q ss_pred HhHHHHHHCCCCEEE
Q 001846 967 ATFDECLKCGMDGYV 981 (1006)
Q Consensus 967 ~~~~~~~~aG~d~yl 981 (1006)
+...++.++|+|..-
T Consensus 244 ~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 244 ENLPAYGGTGVDYIS 258 (277)
T ss_pred HHHHHHHHcCCCEEE
Confidence 889999999999764
No 401
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=24.95 E-value=3.1e+02 Score=27.47 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCCCCCHH-------HHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCC
Q 001846 904 CFDACFMDIQMPEMDGF-------EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCG 976 (1006)
Q Consensus 904 ~~DlIlmDi~MP~mdG~-------e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG 976 (1006)
..|.+.++-..+...+. ...+.++. ...+||++..+-...++..+++++|
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~pi~~~GGi~~~~~~~~~~~~G 192 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----------------------GSKVPVIAGGGINDPEDAAEALALG 192 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----------------------cCCCCEEEECCCCCHHHHHHHHHhC
Confidence 47999888877755432 22333322 2368999988777779999999999
Q ss_pred CCEEEe
Q 001846 977 MDGYVS 982 (1006)
Q Consensus 977 ~d~yl~ 982 (1006)
+|.+..
T Consensus 193 ad~v~v 198 (200)
T cd04722 193 ADGVIV 198 (200)
T ss_pred CCEEEe
Confidence 998864
No 402
>PLN02335 anthranilate synthase
Probab=24.86 E-value=1.4e+02 Score=31.90 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=33.5
Q ss_pred ccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 858 RGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 858 ~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
..++|||||-..-....+...|++.|+.+.++.+....++.+.. ..||.|++
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~-~~~d~iVi 68 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR-KNPRGVLI 68 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh-cCCCEEEE
Confidence 45689999854455666888889999988887653211233322 34776655
No 403
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=24.76 E-value=2e+02 Score=31.47 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=41.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe--EE-EeCCHHHHHHHhcC----CCCCcEEEEeCC
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT--VE-CAASAKAALDKLQS----PHCFDACFMDIQ 913 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~--v~-~a~~g~eAl~~l~~----~~~~DlIlmDi~ 913 (1006)
-+|.-+|=|+.....++..+++.|+. |. ...+..+.+..+.. ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 37999999999999999999999852 43 45666777766532 146999999986
No 404
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=24.69 E-value=7.6e+02 Score=25.18 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 001846 361 VEDDFHKMQELKVRAEAADVAKSQFLATVSHEIRTPMNGIL 401 (1006)
Q Consensus 361 ~~~~~~~l~~~k~~ae~a~~aKs~Fla~vSHELRTPLn~I~ 401 (1006)
+..++.+.++.+.+++.....-.+-++..--|.+.=++...
T Consensus 52 I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 92 (173)
T PRK13460 52 VQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAK 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333323334444444444444333
No 405
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=24.69 E-value=3.1e+02 Score=30.99 Aligned_cols=75 Identities=9% Similarity=0.013 Sum_probs=45.2
Q ss_pred EEEeCCHHHHHHHhcC----CCCCcEEEEeCC--CCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEE
Q 001846 886 VECAASAKAALDKLQS----PHCFDACFMDIQ--MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959 (1006)
Q Consensus 886 v~~a~~g~eAl~~l~~----~~~~DlIlmDi~--MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIa 959 (1006)
...+.+-+||.+.++- ....|+|++|=. -|+- .-+....+++.-... .... .+.
T Consensus 207 eVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~-~~~~~e~l~~av~~~------------------~~~~-~lE 266 (308)
T PLN02716 207 EVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-GDVDVSMLKEAVELI------------------NGRF-ETE 266 (308)
T ss_pred EEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc-cCCCHHHHHHHHHhh------------------CCCc-eEE
Confidence 3457889999998860 024899999953 1221 111122222211000 0123 488
Q ss_pred EecCCCHHhHHHHHHCCCCEE
Q 001846 960 MTADVIHATFDECLKCGMDGY 980 (1006)
Q Consensus 960 lTa~~~~~~~~~~~~aG~d~y 980 (1006)
.++....+...+..+.|+|-.
T Consensus 267 aSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 267 ASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred EECCCCHHHHHHHHHcCCCEE
Confidence 899999999999999999954
No 406
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=24.69 E-value=1.9e+02 Score=30.13 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=44.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCe--EE-EeCCHHHHHHHhcC-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGAT--VE-CAASAKAALDKLQS-PHCFDACFMDIQMPEMDGFEATRRI 926 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~--v~-~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~e~~~~I 926 (1006)
.++..||.++.....++.-++..|.. +. ...|..+++..+.. ...||+|++|-=...-.--+++..+
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 37999999999999999988887763 33 44555566654432 2348999999655432223344444
No 407
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.51 E-value=1.4e+02 Score=33.02 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=26.3
Q ss_pred CCCcEEEEecCC------CHHhHHHHHHCCCCEEEeCCCCHH
Q 001846 953 LHLPILAMTADV------IHATFDECLKCGMDGYVSKPFEEE 988 (1006)
Q Consensus 953 ~~~PIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~ 988 (1006)
..+||+.||=.. .+.-..+|.++|+|+.|.-=+.++
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~e 134 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPE 134 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChH
Confidence 368999999433 345577899999999998544433
No 408
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.50 E-value=5.5e+02 Score=28.83 Aligned_cols=66 Identities=15% Similarity=0.000 Sum_probs=46.0
Q ss_pred EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 886 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
...+.+-+||.+.+.. ..|+|++|=.-|+ +=-++.+.++. -.++..++...
T Consensus 201 eVEv~tleea~~a~~a--gaDiImLDnmspe-~l~~av~~~~~--------------------------~~~leaSGGI~ 251 (290)
T PRK06559 201 EVEVESLAAAEEAAAA--GADIIMLDNMSLE-QIEQAITLIAG--------------------------RSRIECSGNID 251 (290)
T ss_pred EEECCCHHHHHHHHHc--CCCEEEECCCCHH-HHHHHHHHhcC--------------------------ceEEEEECCCC
Confidence 3457999999998865 4899999943322 22233332221 24788899999
Q ss_pred HHhHHHHHHCCCCEE
Q 001846 966 HATFDECLKCGMDGY 980 (1006)
Q Consensus 966 ~~~~~~~~~aG~d~y 980 (1006)
.+...+..+.|+|-.
T Consensus 252 ~~ni~~yA~tGVD~I 266 (290)
T PRK06559 252 MTTISRFRGLAIDYV 266 (290)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999954
No 409
>PRK04302 triosephosphate isomerase; Provisional
Probab=24.49 E-value=7.8e+02 Score=26.14 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEEEeC
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGYVSK 983 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~yl~K 983 (1006)
++||++=.+-...++...+++.|+|+++.-
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 589998887778999999999999999753
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.20 E-value=7.1e+02 Score=29.18 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=60.7
Q ss_pred cceEEEecCcHH---HHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEEeCC--CCCCCHHHHHHHHHhhhchh
Q 001846 859 GKKILVVDDNGV---NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFMDIQ--MPEMDGFEATRRIRQMESKA 933 (1006)
Q Consensus 859 ~~~ILvVDDn~~---n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~--MP~mdG~e~~~~IR~~e~~~ 933 (1006)
+++|.+|+-|.. -...++.+-+..|..+.++.+..+....+.....+|+||+|-- +| -|-.. +.+++++-...
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~~ 283 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSP-KDFMK-LAEMKELLNAC 283 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHhc
Confidence 457888776642 2223444555567888888877665554443356999999963 22 23332 34444332110
Q ss_pred hhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHH----CCCCEEEe
Q 001846 934 NEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLK----CGMDGYVS 982 (1006)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~----aG~d~yl~ 982 (1006)
....-.+++++|.....+..+.++ .|.++.|.
T Consensus 284 -----------------~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 284 -----------------GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred -----------------CCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 011235788999888777665543 46777754
No 411
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.19 E-value=3.2e+02 Score=29.88 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCCC-C--HHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHh
Q 001846 892 AKAALDKLQSPHCFDACFMDIQMPEM-D--GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHAT 968 (1006)
Q Consensus 892 g~eAl~~l~~~~~~DlIlmDi~MP~m-d--G~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~ 968 (1006)
..+.++.+.+...-.++++|+.--++ . -+++++++++. ..+|||+--.-.+.++
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~-----------------------~~ipvIasGGv~s~eD 210 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA-----------------------LKIPLIALGGAGSLDD 210 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444544432222466676642211 1 26777888752 3689999999999999
Q ss_pred HHHHH-HCCCCEEE-eCCCC
Q 001846 969 FDECL-KCGMDGYV-SKPFE 986 (1006)
Q Consensus 969 ~~~~~-~aG~d~yl-~KP~~ 986 (1006)
..+++ +.|+|+.+ .++|.
T Consensus 211 ~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 211 IVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred HHHHHHHCCCCEEEEcceee
Confidence 99999 79999874 34443
No 412
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.10 E-value=5.2e+02 Score=27.80 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=51.2
Q ss_pred HHHhhcCC-eEEEeCCHHHHHHHhcC--CCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCC
Q 001846 877 GALKKFGA-TVECAASAKAALDKLQS--PHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDEL 953 (1006)
Q Consensus 877 ~~L~~~G~-~v~~a~~g~eAl~~l~~--~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~ 953 (1006)
..|.+.+. -|....+.++|++..+. ...+. .+.+-|-.-+++++++.|++.-.+ ..+
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~------------------~~p 69 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAK------------------ELP 69 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHh------------------hCC
Confidence 34444443 34456677777665431 12233 345566666678888887642110 011
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRE 993 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~ 993 (1006)
++ +|..-.-.+.++.+.+.++|++ |+.-|.--.++.+.
T Consensus 70 ~~-~vGaGTVl~~e~a~~a~~aGA~-FiVsP~~~~~v~~~ 107 (222)
T PRK07114 70 GM-ILGVGSIVDAATAALYIQLGAN-FIVTPLFNPDIAKV 107 (222)
T ss_pred Ce-EEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 11 3444444567778888999998 55556554444443
No 413
>PRK10742 putative methyltransferase; Provisional
Probab=24.04 E-value=7.2e+02 Score=27.25 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=43.4
Q ss_pred cceEEEecCcHHHHHHHHHHHhhc------CC----eEE-EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCC
Q 001846 859 GKKILVVDDNGVNRMVAAGALKKF------GA----TVE-CAASAKAALDKLQSPHCFDACFMDIQMPEMD 918 (1006)
Q Consensus 859 ~~~ILvVDDn~~n~~~l~~~L~~~------G~----~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~md 918 (1006)
|-+|..||-++....+++.-|++. +. .+. ...|..+.+.... ..||+|++|-.-|.-.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~--~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT--PRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC--CCCcEEEECCCCCCCc
Confidence 446999999999999999999874 21 122 3466666666543 3599999999999754
No 414
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=24.01 E-value=8.3e+02 Score=25.50 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=54.7
Q ss_pred HHHHhhcCCeEEEe---CCHHHHHHHhcCCCCCcEEEEeCCCCCCCHH-------HHHHHHHhhhchhhhhhccCCCCcC
Q 001846 876 AGALKKFGATVECA---ASAKAALDKLQSPHCFDACFMDIQMPEMDGF-------EATRRIRQMESKANEQMMNGGSSVD 945 (1006)
Q Consensus 876 ~~~L~~~G~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-------e~~~~IR~~e~~~~~~~~~~~~~~~ 945 (1006)
...+++.|..+... .+..+.++.+.. ..|.|+++-.-|+.+|- +-++++|+.-.
T Consensus 102 ~~~~~~~~~~~g~~~~~~t~~e~~~~~~~--~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~-------------- 165 (220)
T PRK05581 102 LQLIKSAGIKAGLVLNPATPLEPLEDVLD--LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLID-------------- 165 (220)
T ss_pred HHHHHHcCCEEEEEECCCCCHHHHHHHHh--hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHH--------------
Confidence 34445567654332 244555555533 26777776555655542 33444443210
Q ss_pred CCcccCCCCC-cEEEEecCCCHHhHHHHHHCCCCEEEe-----CCCCHHHHHHHHHH
Q 001846 946 GTAKRDELHL-PILAMTADVIHATFDECLKCGMDGYVS-----KPFEEENLYRELAK 996 (1006)
Q Consensus 946 ~~~~~~~~~~-PIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~ 996 (1006)
..++ |.|++.+-...+...++.++|+|.++. +.=++.+-.+.+.+
T Consensus 166 ------~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 166 ------ERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred ------hcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 0123 567777777888888999999997754 43344444444443
No 415
>PRK11677 hypothetical protein; Provisional
Probab=23.96 E-value=4.3e+02 Score=26.13 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccc
Q 001846 36 WLPKALVLWIMGMAFISMSIYRGMD 60 (1006)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (1006)
|+-.++ ++| .++++++++..+.+
T Consensus 3 W~~a~i-~li-vG~iiG~~~~R~~~ 25 (134)
T PRK11677 3 WEYALI-GLV-VGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHH-HHH-HHHHHHHHHHhhcc
Confidence 553433 333 33334444433333
No 416
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=23.84 E-value=9.9e+02 Score=29.01 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=62.9
Q ss_pred ccceEEEe--cCcHHHHHH---HHHHHh-hcCCeEEEeCCHHHHHHH----------------hc-CCCCCcEEEEeCCC
Q 001846 858 RGKKILVV--DDNGVNRMV---AAGALK-KFGATVECAASAKAALDK----------------LQ-SPHCFDACFMDIQM 914 (1006)
Q Consensus 858 ~~~~ILvV--DDn~~n~~~---l~~~L~-~~G~~v~~a~~g~eAl~~----------------l~-~~~~~DlIlmDi~M 914 (1006)
..++|+|| -+.+....+ +...|+ ..|+.|....+....+.. .. -...+|+|+.
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs---- 268 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT---- 268 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----
Confidence 35678888 344444444 344555 578888775443222210 00 0013566664
Q ss_pred CCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHH
Q 001846 915 PEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYREL 994 (1006)
Q Consensus 915 P~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l 994 (1006)
=+-|| .+++..|... ...+||+.+. .|=-+||+ +++++++...|
T Consensus 269 iGGDG-TlL~Aar~~~---------------------~~~iPILGIN-------------~G~LGFLt-~i~~~e~~~~L 312 (508)
T PLN02935 269 LGGDG-TVLWAASMFK---------------------GPVPPVVPFS-------------MGSLGFMT-PFHSEQYRDCL 312 (508)
T ss_pred ECCcH-HHHHHHHHhc---------------------cCCCcEEEEe-------------CCCcceec-ccCHHHHHHHH
Confidence 26788 4566666532 2358999874 47778986 79999999999
Q ss_pred HHHhcc
Q 001846 995 AKFFKS 1000 (1006)
Q Consensus 995 ~~~l~~ 1000 (1006)
.++++.
T Consensus 313 e~il~G 318 (508)
T PLN02935 313 DAILKG 318 (508)
T ss_pred HHHHcC
Confidence 999864
No 417
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=23.82 E-value=2.2e+02 Score=28.50 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=39.3
Q ss_pred ccceEEEecCcHHHHHHHHHHHhhcCCeEEE---------------eCCHHHHHHHhc---CCCCCcEEEEe-CCCCCCC
Q 001846 858 RGKKILVVDDNGVNRMVAAGALKKFGATVEC---------------AASAKAALDKLQ---SPHCFDACFMD-IQMPEMD 918 (1006)
Q Consensus 858 ~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~---------------a~~g~eAl~~l~---~~~~~DlIlmD-i~MP~md 918 (1006)
+++|+||..--.+....+..+|+..++.+.. ...+- ....+. ....||+|||| ++--+-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEeccccCCHH
Confidence 4568999999999999999999877643321 11111 122221 12359999999 4443333
Q ss_pred HHHHHHHHHhh
Q 001846 919 GFEATRRIRQM 929 (1006)
Q Consensus 919 G~e~~~~IR~~ 929 (1006)
-+-+.-.|+..
T Consensus 111 sIA~rg~l~~~ 121 (148)
T PF07652_consen 111 SIAARGYLREL 121 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhheeHHHh
Confidence 34444455554
No 418
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.71 E-value=7e+02 Score=27.57 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=42.7
Q ss_pred EEecCcHHH---HHHHHHHHhhcCCeEEE-------eCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Q 001846 863 LVVDDNGVN---RMVAAGALKKFGATVEC-------AASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQ 928 (1006)
Q Consensus 863 LvVDDn~~n---~~~l~~~L~~~G~~v~~-------a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~ 928 (1006)
+|.+|++.- ...++..+++.|.++.. ..|-...+..++. ..+|+|++-.. ..++..+++++++
T Consensus 142 il~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~-~~pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 142 TTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA-GGPDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred EEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEEecc--cchHHHHHHHHHH
Confidence 444555543 34566778888988654 2466677777876 46999998654 3377778888875
No 419
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=23.65 E-value=5.1e+02 Score=30.25 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=59.0
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEE---------------EeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHH
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVE---------------CAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATR 924 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~---------------~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~ 924 (1006)
.+++||-|.+.....+...+++.|.... .+..-.+.-..+.. -|++++=-...+.-|...++
T Consensus 263 ~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~---aDi~~v~~S~~e~~g~~~lE 339 (425)
T PRK05749 263 LLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI---ADIAFVGGSLVKRGGHNPLE 339 (425)
T ss_pred cEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh---CCEEEECCCcCCCCCCCHHH
Confidence 3688888887654567777888786432 22222333333322 47766522221112322222
Q ss_pred HHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhH-HHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 925 RIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATF-DECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 925 ~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~-~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+ .+.+|||+--......+. +...+. +++..|-+.++|.++|.+++.+
T Consensus 340 Am-------------------------a~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 340 PA-------------------------AFGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred HH-------------------------HhCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhcC
Confidence 22 235799863221222222 222233 4667788999999999988763
No 420
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=23.61 E-value=3.5e+02 Score=28.97 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=48.3
Q ss_pred CHHHHHHHhcCCCCCcEEEEeCCCCCC-CH--HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHH
Q 001846 891 SAKAALDKLQSPHCFDACFMDIQMPEM-DG--FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHA 967 (1006)
Q Consensus 891 ~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG--~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~ 967 (1006)
+..+..+.+.... ..+|++|+.--++ .| +++++++++. ..+|||+=-+-.+.+
T Consensus 142 ~~~~~~~~~~~~g-~~ii~tdI~~dGt~~G~d~eli~~i~~~-----------------------~~~pvia~GGi~s~e 197 (221)
T TIGR00734 142 SLEEVRDFLNSFD-YGLIVLDIHSVGTMKGPNLELLTKTLEL-----------------------SEHPVMLGGGISGVE 197 (221)
T ss_pred cHHHHHHHHHhcC-CEEEEEECCccccCCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHH
Confidence 4444444443322 3688899876443 33 6788888752 258999988888899
Q ss_pred hHHHHHHCCCCEEEe
Q 001846 968 TFDECLKCGMDGYVS 982 (1006)
Q Consensus 968 ~~~~~~~aG~d~yl~ 982 (1006)
+..++.++|+++.+.
T Consensus 198 d~~~l~~~Ga~~viv 212 (221)
T TIGR00734 198 DLELLKEMGVSAVLV 212 (221)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999875
No 421
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=23.60 E-value=5.8e+02 Score=30.96 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=58.6
Q ss_pred ceEEEecC----cHHHHHHHHHHHhhc-CCeEEE--eCCHHHHHHHhcCCCCCcEEEEeC--------------CCCCCC
Q 001846 860 KKILVVDD----NGVNRMVAAGALKKF-GATVEC--AASAKAALDKLQSPHCFDACFMDI--------------QMPEMD 918 (1006)
Q Consensus 860 ~~ILvVDD----n~~n~~~l~~~L~~~-G~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi--------------~MP~md 918 (1006)
-.++++|- .......++.+-+.+ +..+.. +.+.++|...... ..|.|.+.+ -.|
T Consensus 254 ~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a--Gad~I~vg~g~Gs~~~t~~~~~~g~p--- 328 (495)
T PTZ00314 254 VDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA--GADGLRIGMGSGSICITQEVCAVGRP--- 328 (495)
T ss_pred CCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc--CCCEEEECCcCCcccccchhccCCCC---
Confidence 35777773 333334444443343 334433 6677777766653 368775432 233
Q ss_pred HHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 919 GFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 919 G~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.+.++..+++.-. ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 329 ~~~ai~~~~~~~~--------------------~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 329 QASAVYHVARYAR--------------------ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred hHHHHHHHHHHHh--------------------hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 2344444443211 2258999988888899999999999998764
No 422
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.37 E-value=7e+02 Score=28.04 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=60.4
Q ss_pred eEEEe--cCcHHHH---HHHHHHHhhcCCeEEEeCCHHH---HH------------HHhcCCCCCcEEEEeCCCCCCCHH
Q 001846 861 KILVV--DDNGVNR---MVAAGALKKFGATVECAASAKA---AL------------DKLQSPHCFDACFMDIQMPEMDGF 920 (1006)
Q Consensus 861 ~ILvV--DDn~~n~---~~l~~~L~~~G~~v~~a~~g~e---Al------------~~l~~~~~~DlIlmDi~MP~mdG~ 920 (1006)
+|+|+ -+.+... ..+...|++.|+++........ +. ..+ ....|+|+. =+-||
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vi~----lGGDG- 79 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTEL--GQYCDLVAV----LGGDG- 79 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhc--CcCCCEEEE----ECCcH-
Confidence 57766 2333333 3455567788998876432111 11 011 113577665 26788
Q ss_pred HHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 921 EATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 921 e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
.+++..|... ...+||+.+- .|=-+||+ .++++++.+.|.++++.
T Consensus 80 T~L~aa~~~~---------------------~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 80 TFLSVAREIA---------------------PRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEG 124 (296)
T ss_pred HHHHHHHHhc---------------------ccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcC
Confidence 4556665432 2368999886 36688999 59999999999998864
No 423
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=23.30 E-value=2.6e+02 Score=31.32 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=46.3
Q ss_pred eEEEecCcHHHHHHHHHHHhhc--CCe---E-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHH
Q 001846 861 KILVVDDNGVNRMVAAGALKKF--GAT---V-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEA 922 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~--G~~---v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~ 922 (1006)
.|+++|=+....++-+.+|... ||+ | ....||...++.++. ..||+|+.|..=|.+.+-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~-~~~dVii~dssdpvgpa~~l 213 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE-NPFDVIITDSSDPVGPACAL 213 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc-CCceEEEEecCCccchHHHH
Confidence 5888888887777777777643 442 2 234599999998865 56999999999999988654
No 424
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=23.20 E-value=6.6e+02 Score=28.16 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=61.2
Q ss_pred eEEEe--cCcHHH---HHHHHHHHhhcCCeEEEeCCHHHHH----------HHhcCCCCCcEEEEeCCCCCCCHHHHHHH
Q 001846 861 KILVV--DDNGVN---RMVAAGALKKFGATVECAASAKAAL----------DKLQSPHCFDACFMDIQMPEMDGFEATRR 925 (1006)
Q Consensus 861 ~ILvV--DDn~~n---~~~l~~~L~~~G~~v~~a~~g~eAl----------~~l~~~~~~DlIlmDi~MP~mdG~e~~~~ 925 (1006)
+|+|+ .+.+.. ...+...|++.|+++....+..... +.+ ...+|+|+. =+-|| .+++.
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~----~GGDG-t~l~~ 79 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI--GARADLAVV----LGGDG-TMLGI 79 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh--ccCCCEEEE----ECCcH-HHHHH
Confidence 46666 233333 3455566778898877654322211 111 124788776 36787 45666
Q ss_pred HHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 926 IRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 926 IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
+|... ...+||+.+. .|=-+||+ .++++++.+.|.++++.
T Consensus 80 ~~~~~---------------------~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 80 GRQLA---------------------PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred HHHhc---------------------CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 66532 2368999875 35668988 79999999999998754
No 425
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=23.17 E-value=2.8e+02 Score=29.80 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=53.3
Q ss_pred CCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCC-CH--HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEE
Q 001846 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEM-DG--FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILA 959 (1006)
Q Consensus 883 G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG--~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIa 959 (1006)
|+.-...-+..+.++.+.....-.+|++|+.=-++ .| +++++++++.- ++|+|+
T Consensus 140 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~-----------------------~~~via 196 (229)
T PF00977_consen 140 GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV-----------------------NIPVIA 196 (229)
T ss_dssp TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH-----------------------SSEEEE
T ss_pred CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc-----------------------CCCEEE
Confidence 44444455677777766554445689999865533 23 57777777531 689999
Q ss_pred EecCCCHHhHHHHHHCCCCEEEe
Q 001846 960 MTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 960 lTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
--+-.+.++..++.+.|+++.+.
T Consensus 197 sGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 197 SGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp ESS--SHHHHHHHHHTTECEEEE
T ss_pred ecCCCCHHHHHHHHHCCCcEEEE
Confidence 88888999999999999999875
No 426
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.92 E-value=1.5e+02 Score=32.33 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=48.5
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcC-----CeE-EEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCH-----HHHHHHHHh
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFG-----ATV-ECAASAKAALDKLQSPHCFDACFMDIQMPEMDG-----FEATRRIRQ 928 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G-----~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~ 928 (1006)
.+|-+||=|+...++++..+.... -.+ ....||..-++..... .||+|++|+.-|...+ .|..+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEE-KYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST--EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCC-cccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 479999999999999999887532 122 3688999988776542 6999999998886554 355555554
No 427
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=22.90 E-value=2.4e+02 Score=29.90 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=27.3
Q ss_pred CCcEEEEecC----------CCHHhHHHHHHCCCCEEEe-------CC--CCHHHHHHHHHH
Q 001846 954 HLPILAMTAD----------VIHATFDECLKCGMDGYVS-------KP--FEEENLYRELAK 996 (1006)
Q Consensus 954 ~~PIIalTa~----------~~~~~~~~~~~aG~d~yl~-------KP--~~~~~L~~~l~~ 996 (1006)
.+|||.++.. ...+...+|.++|+| ++. +| -...++.+.+++
T Consensus 56 ~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 56 DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 4788766541 234567899999999 554 35 455666666655
No 428
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.82 E-value=2.9e+02 Score=30.86 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=45.7
Q ss_pred EEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 886 VECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 886 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
...+.+-+||.+.++. .+|+|++|=.-| -++-+.+... ....| +..++...
T Consensus 198 eVEv~tleea~ea~~~--gaDiI~LDn~s~----e~l~~av~~~----------------------~~~~~-leaSGGI~ 248 (281)
T PRK06106 198 EVEVDTLDQLEEALEL--GVDAVLLDNMTP----DTLREAVAIV----------------------AGRAI-TEASGRIT 248 (281)
T ss_pred EEEeCCHHHHHHHHHc--CCCEEEeCCCCH----HHHHHHHHHh----------------------CCCce-EEEECCCC
Confidence 3568899999999864 489999994332 2222222211 01233 78899999
Q ss_pred HHhHHHHHHCCCCEEE
Q 001846 966 HATFDECLKCGMDGYV 981 (1006)
Q Consensus 966 ~~~~~~~~~aG~d~yl 981 (1006)
.+...+..+.|+|-..
T Consensus 249 ~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 249 PETAPAIAASGVDLIS 264 (281)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 9999999999998553
No 429
>PRK05670 anthranilate synthase component II; Provisional
Probab=22.68 E-value=1.5e+02 Score=30.66 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=33.3
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
|||+|-....-.-+...|.+.|+.+..........+.+.. ..||.|++
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA-LNPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh-CCCCEEEE
Confidence 8999988888888999999999998876554211122222 23786665
No 430
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=22.51 E-value=4.4e+02 Score=29.50 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=25.8
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEEE
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGYV 981 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~yl 981 (1006)
++|||+...-.+.++..+++.+|||...
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 6899999999999999999999999764
No 431
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.47 E-value=3.2e+02 Score=28.64 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=35.7
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
+|+|+|-.--|...+...|++.|+++....+..+ + ..||.|++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~---~~~d~iii 44 (200)
T PRK13143 2 MIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I---LDADGIVL 44 (200)
T ss_pred eEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H---ccCCEEEE
Confidence 7999999999999999999999999998876432 2 24898887
No 432
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.47 E-value=7.6e+02 Score=27.72 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=60.3
Q ss_pred eEEEe--cCcH---HHHHHHHHHHhhcCCeEEEeCCHHHHHH-----H---hcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001846 861 KILVV--DDNG---VNRMVAAGALKKFGATVECAASAKAALD-----K---LQSPHCFDACFMDIQMPEMDGFEATRRIR 927 (1006)
Q Consensus 861 ~ILvV--DDn~---~n~~~l~~~L~~~G~~v~~a~~g~eAl~-----~---l~~~~~~DlIlmDi~MP~mdG~e~~~~IR 927 (1006)
+|.|| .+.+ ...+.+...|++.|+++.......+.+. . ......+|+|+. =+-||. +++..|
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 80 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAAR 80 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHHH
Confidence 56666 2333 3344556667888998877554322111 0 001124777765 266773 444455
Q ss_pred hhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 928 QMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 928 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
... ...+||+.+.. |=-+|++ .++++++.++|.++++.
T Consensus 81 ~~~---------------------~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 81 ALA---------------------RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred Hhc---------------------CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcC
Confidence 421 23689998764 6667885 69999999999998864
No 433
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.35 E-value=81 Score=32.76 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=35.9
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
||+||.....-.-+..+|++.|+++..+.+.+..++.+.. ..||.|++
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iil 49 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA-LKPQKIVI 49 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-cCCCEEEE
Confidence 8999999888888999999999998887775422333333 24787766
No 434
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.35 E-value=2.3e+02 Score=32.16 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHH----HHHCCC--CEEEe
Q 001846 920 FEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDE----CLKCGM--DGYVS 982 (1006)
Q Consensus 920 ~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~----~~~aG~--d~yl~ 982 (1006)
-|+++.++++.. ..++|.|+|+|-++.+...+ +.++|+ +|||.
T Consensus 227 ~eA~~~f~eq~~--------------------~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 275 (325)
T TIGR01232 227 EEAAQHFKDQDA--------------------ATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLC 275 (325)
T ss_pred HHHHHHHHHHhh--------------------ccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 478888886432 24799999999998776554 567898 79985
No 435
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.28 E-value=4.7e+02 Score=29.30 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=64.0
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCC--eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGA--TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~--~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+++++.+.+. ...++...++.|. .|.....-.+..+.+.. .|++++=-. .+.-|.-+++.+.
T Consensus 229 ~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~---~d~~v~ps~-~E~~~~~~~EAma----------- 292 (371)
T cd04962 229 RLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI---ADLFLLPSE-KESFGLAALEAMA----------- 292 (371)
T ss_pred eEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh---cCEEEeCCC-cCCCccHHHHHHH-----------
Confidence 5666665543 3445556666654 35554444444444432 587776432 3344555554443
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFK 999 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~ 999 (1006)
..+|+|+..... ..+.+..|.++|+.+|-+.++|.+++.+++.
T Consensus 293 --------------~g~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 293 --------------CGVPVVASNAGG----IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred --------------cCCCEEEeCCCC----chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 258998843322 3456677889999999999999999988875
No 436
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=21.92 E-value=2e+02 Score=24.52 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=9.5
Q ss_pred HHHHHHhhhhhHHHHH
Q 001846 65 IRRKEVLGSMCDQRAR 80 (1006)
Q Consensus 65 ~~~~~~~~~~~~~~~~ 80 (1006)
..|+..|+.-.++++|
T Consensus 39 ~qrr~iL~~v~r~~aR 54 (67)
T COG3114 39 LQRRAILRGVARQRAR 54 (67)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666665554
No 437
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.80 E-value=8.5e+02 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001846 360 KVEDDFHKMQELKVRAEAA 378 (1006)
Q Consensus 360 ~~~~~~~~l~~~k~~ae~a 378 (1006)
.+..++.+.++.+.+++..
T Consensus 45 ~I~~~l~~Ae~~k~eAe~~ 63 (167)
T PRK14475 45 KIQAELDEAQRLREEAQAL 63 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 438
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.65 E-value=1e+03 Score=25.98 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=54.3
Q ss_pred EEEecCcHHHHHHHHHHHhhcCCeEE--EeC-CHHHHHHHh-cCCCCCcEEEEeCCCCCCC---------HHHHHHHHHh
Q 001846 862 ILVVDDNGVNRMVAAGALKKFGATVE--CAA-SAKAALDKL-QSPHCFDACFMDIQMPEMD---------GFEATRRIRQ 928 (1006)
Q Consensus 862 ILvVDDn~~n~~~l~~~L~~~G~~v~--~a~-~g~eAl~~l-~~~~~~DlIlmDi~MP~md---------G~e~~~~IR~ 928 (1006)
|++.|--......+...++++|.... ++. +..+-+..+ .....|..++. . + +-. -.+.++++|+
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHHHHHh
Confidence 55555544455566677788887643 222 223333333 22222555433 2 1 222 3556666664
Q ss_pred hhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCC
Q 001846 929 MESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKP 984 (1006)
Q Consensus 929 ~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP 984 (1006)
. ...||++=-+-.+.++..++.++|+|+++.-.
T Consensus 196 ~-----------------------~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 196 Y-----------------------SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred h-----------------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 2 14576653333458899999999999998764
No 439
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.59 E-value=2.7e+02 Score=30.21 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=27.5
Q ss_pred CCcEEEEe-----cCCCHHhHHHHHHCCCCEEEeC--CCC-HHHHHHHHHH
Q 001846 954 HLPILAMT-----ADVIHATFDECLKCGMDGYVSK--PFE-EENLYRELAK 996 (1006)
Q Consensus 954 ~~PIIalT-----a~~~~~~~~~~~~aG~d~yl~K--P~~-~~~L~~~l~~ 996 (1006)
++|++.|| .........+|.++|+|+++.- |++ .+++.+.+..
T Consensus 74 ~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~ 124 (244)
T PRK13125 74 SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEI 124 (244)
T ss_pred CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHH
Confidence 67987775 2233444778999999999884 454 3455444433
No 440
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=21.51 E-value=85 Score=33.42 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred eEEecHHHHHHHHHHHHHHHhccCC
Q 001846 490 FVLGDPGRFRQIITNLVGNSVKFTE 514 (1006)
Q Consensus 490 ~v~gD~~rl~QIl~NLl~NAiKfT~ 514 (1006)
.+-|||.|-+-|-.|++.|++++++
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vne 42 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNE 42 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhh
Confidence 3569999999999999999999984
No 441
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.43 E-value=6e+02 Score=27.18 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=51.1
Q ss_pred CHHHHHHHhcCCCCCc-EEEEeCCCC---CCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCH
Q 001846 891 SAKAALDKLQSPHCFD-ACFMDIQMP---EMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIH 966 (1006)
Q Consensus 891 ~g~eAl~~l~~~~~~D-lIlmDi~MP---~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~ 966 (1006)
+..+..+.+.. ..++ +++.|+..- ..-.++.++++++. .++||++--.-.+.
T Consensus 150 ~~~~~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~iPvia~GGI~~~ 205 (241)
T PRK13585 150 TPVEAAKRFEE-LGAGSILFTNVDVEGLLEGVNTEPVKELVDS-----------------------VDIPVIASGGVTTL 205 (241)
T ss_pred CHHHHHHHHHH-cCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCH
Confidence 44555555544 3355 555565321 12346778888752 25899998888888
Q ss_pred HhHHHHHHCCCCEEE------eCCCCHHHHHHH
Q 001846 967 ATFDECLKCGMDGYV------SKPFEEENLYRE 993 (1006)
Q Consensus 967 ~~~~~~~~aG~d~yl------~KP~~~~~L~~~ 993 (1006)
++..++.++|+++.+ ..|+..+++...
T Consensus 206 ~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 206 DDLRALKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred HHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 889899999999875 356666655443
No 442
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.38 E-value=3.5e+02 Score=28.42 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=59.6
Q ss_pred HHHHHHhhcCCeEEEe--CCHHHHHHHhcCCCCCcEEEEeCCCCC-----CCHHHHHHHHHhhhchhhhhhccCCCCcCC
Q 001846 874 VAAGALKKFGATVECA--ASAKAALDKLQSPHCFDACFMDIQMPE-----MDGFEATRRIRQMESKANEQMMNGGSSVDG 946 (1006)
Q Consensus 874 ~l~~~L~~~G~~v~~a--~~g~eAl~~l~~~~~~DlIlmDi~MP~-----mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~ 946 (1006)
-....|++.|+.+... ..+...++.+.. -.||.|=+|..+.. ......++.|...-+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~-~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~--------------- 199 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKR-LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH--------------- 199 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH---------------
Confidence 3445578889987764 455666667765 45899999965421 223445555554321
Q ss_pred CcccCCCCCcEEEEecCCCHHhHHHHHHCCCC----EEEeCCCCHH
Q 001846 947 TAKRDELHLPILAMTADVIHATFDECLKCGMD----GYVSKPFEEE 988 (1006)
Q Consensus 947 ~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~ 988 (1006)
..++++| .+.-.+.+....+.+.|++ .|+.||.+.+
T Consensus 200 -----~~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 200 -----SLGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred -----HCCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 1235554 5777788899999999996 3577887653
No 443
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=21.36 E-value=6.9e+02 Score=28.91 Aligned_cols=116 Identities=17% Similarity=0.079 Sum_probs=67.9
Q ss_pred ccccceEEEecCcHHHHHHHHHHHhhcCCeEEEe--------CC---HHHHHHHhcCCCCCcEE-EEeCCCCCCCHHHHH
Q 001846 856 LLRGKKILVVDDNGVNRMVAAGALKKFGATVECA--------AS---AKAALDKLQSPHCFDAC-FMDIQMPEMDGFEAT 923 (1006)
Q Consensus 856 ~~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a--------~~---g~eAl~~l~~~~~~DlI-lmDi~MP~mdG~e~~ 923 (1006)
.+.|++|||--.. ....+...|++.|+++... .+ ..+++..+.. ..||.| |+. .+|.++.
T Consensus 8 pL~g~rIlvtr~~--~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~-~~~d~vvfTS-----~ngv~~~ 79 (381)
T PRK07239 8 PLAGFTVGVTAAR--RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIA-APPDIVVATT-----GIGFRGW 79 (381)
T ss_pred CCCCcEEEEeccC--CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHc-CCCCEEEEeC-----hHHHHHH
Confidence 4678999999754 4567778999999987663 12 1234444432 347755 454 4676653
Q ss_pred -HHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCC-EEEeCCCCHHHHHHHHHH
Q 001846 924 -RRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMD-GYVSKPFEEENLYRELAK 996 (1006)
Q Consensus 924 -~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d-~yl~KP~~~~~L~~~l~~ 996 (1006)
+.+++...... . .....++||.++- +.+...+.+.|.. ++++.-++.+.|.+.+..
T Consensus 80 ~~~l~~~~~~~~--~-----------~~~l~~~~i~aVG----~~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~ 137 (381)
T PRK07239 80 VEAADGWGLADE--L-----------LEALSSARLLARG----PKATGAIRAAGLREEWSPASESSAEVLEYLLE 137 (381)
T ss_pred HHHHHHcCChHH--H-----------HHHHcCCeEEEEC----ccHHHHHHHcCCCCccCCCCCccHHHHHHHhc
Confidence 33333211000 0 0001257777763 3344555678875 677777888888887765
No 444
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.32 E-value=8.2e+02 Score=28.84 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=49.2
Q ss_pred EeCCHHHHHHHhcCCCCCcEEEEeCCCCC-------C-----CHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCC
Q 001846 888 CAASAKAALDKLQSPHCFDACFMDIQMPE-------M-----DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHL 955 (1006)
Q Consensus 888 ~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-------m-----dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1006)
-+.+.++|..+++. ..|.|..-+- |+ . .-++++..+++.- ....+
T Consensus 201 ~V~T~e~a~~l~~a--GaD~I~vG~g-~Gs~c~tr~~~g~g~p~ltai~~v~~~~--------------------~~~~v 257 (404)
T PRK06843 201 NIVTKEAALDLISV--GADCLKVGIG-PGSICTTRIVAGVGVPQITAICDVYEVC--------------------KNTNI 257 (404)
T ss_pred ecCCHHHHHHHHHc--CCCEEEECCC-CCcCCcceeecCCCCChHHHHHHHHHHH--------------------hhcCC
Confidence 47888888887764 4788874321 11 1 1244554554321 12358
Q ss_pred cEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 956 PILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 956 PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
||||=-.-....+..+|+.+||+.++.
T Consensus 258 pVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 258 CIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999998754
No 445
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.06 E-value=5.1e+02 Score=26.86 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcE-EEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHH
Q 001846 918 DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI-LAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAK 996 (1006)
Q Consensus 918 dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PI-IalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~ 996 (1006)
-|++.+++||+. ...|+ +.+..+......+.|.++|+|+.+.-....+.....++.
T Consensus 43 ~~~~~v~~i~~~-----------------------~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY-----------------------TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc-----------------------CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 578889999852 13455 324444456677888899999977754444444444433
No 446
>PRK13566 anthranilate synthase; Provisional
Probab=21.00 E-value=1.9e+02 Score=36.82 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=39.3
Q ss_pred cccceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 857 LRGKKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 857 ~~~~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
..+++|||||-...+...+..+|++.|++|......... +.+.. ..||.|++
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~~-~~~DgVVL 575 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLDR-VNPDLVVL 575 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhhh-cCCCEEEE
Confidence 357899999988888899999999999999887766432 22222 35898765
No 447
>PRK05637 anthranilate synthase component II; Provisional
Probab=20.95 E-value=1.3e+02 Score=32.02 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=36.8
Q ss_pred ceEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 860 KKILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 860 ~~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
++||++|-..-+..-+...|++.|+.++++.+... ++.+.. ..||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~-~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA-ANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh-cCCCEEEE
Confidence 37999999888888899999999999888876432 222322 34787777
No 448
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=20.90 E-value=4.8e+02 Score=25.22 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCchhHHHHHHHHHHHcCCEEEEeCCHHHHHHHhhccCCCCCCCCCCcEEEEccCccccCCCcchhHhhh
Q 001846 699 GFKGLKAVVVDEKPVRAAVTQYHLNRLGIMVKMSSSIKDASSTAKNGLTSSEDKFQPDIILVEKDCWISGEDSGFNAQLL 778 (1006)
Q Consensus 699 ~~~g~r~lvvd~~~~~~~~~~~~l~~~G~~v~~~~s~~~a~~~~~~~~~~~~~~~~~~~ilid~~~~~~~~~~~~~~~~~ 778 (1006)
.+.|.+...|+.+...+..+...|..-+..|...+++.+.- ...+|++++.-.......-.....++.
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~lp------------~~hYD~~Ll~vavtfr~n~tm~~~~l~ 75 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSALP------------PAHYDMMLLGVAVTFRENLTMQHERLA 75 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccccccC------------hhhhceeeecccccccCCchHHHHHHH
Confidence 46789999999999999999999999999998877665431 245777776433221111111111111
Q ss_pred hcCCCCCcCCCCeEEEEec-CCChhHHHHHHhCCCCceeecccchHHHHHHHH
Q 001846 779 DWKPNGHVFKLPKLILLAT-NISKDECDKAKAGGFADTVIMKPLRASMIAACL 830 (1006)
Q Consensus 779 ~~~~~~~~~~~~~~ill~~-~~~~~~~~~~~~~~~~~~~l~kPl~~~~l~~~l 830 (1006)
.. ..+...++++- +......++.+..|. ..++.||+....|...+
T Consensus 76 ~A------l~mtd~vilalPs~~qv~AeqLkQ~g~-~~CllKPls~~rLlptl 121 (140)
T COG4999 76 KA------LSMTDFVILALPSHAQVNAEQLKQDGA-GACLLKPLSSTRLLPTL 121 (140)
T ss_pred HH------HhhhcceEEecCcHHHHhHHHHhhcch-HhHhhCcchhhhhHHHH
Confidence 11 11222333332 223344555555554 46899999888776643
No 449
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.73 E-value=4.7e+02 Score=28.13 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCeEEEeCCHHHHHHHhcCCCCCc-EEEEeCC----CCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcE
Q 001846 883 GATVECAASAKAALDKLQSPHCFD-ACFMDIQ----MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPI 957 (1006)
Q Consensus 883 G~~v~~a~~g~eAl~~l~~~~~~D-lIlmDi~----MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PI 957 (1006)
|..-....+..+.+..+.. ..+| +++.++. +++-+ ++.++++++ ...+|+
T Consensus 142 ~~~~~~~~~~~~~~~~l~~-~G~d~i~v~~i~~~g~~~g~~-~~~i~~i~~-----------------------~~~~pv 196 (243)
T cd04731 142 GGRKPTGLDAVEWAKEVEE-LGAGEILLTSMDRDGTKKGYD-LELIRAVSS-----------------------AVNIPV 196 (243)
T ss_pred CCceecCCCHHHHHHHHHH-CCCCEEEEeccCCCCCCCCCC-HHHHHHHHh-----------------------hCCCCE
Q ss_pred EEEecCCCHHhHHHHHHC-CCCEEEe
Q 001846 958 LAMTADVIHATFDECLKC-GMDGYVS 982 (1006)
Q Consensus 958 IalTa~~~~~~~~~~~~a-G~d~yl~ 982 (1006)
|+.-.-.+.++..++++. |+|+.+.
T Consensus 197 ia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 197 IASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred EEeCCCCCHHHHHHHHHhCCCCEEEE
No 450
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.67 E-value=1.1e+02 Score=35.30 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCcEEEEecCCCHHhHHHHHHCCCCEE------EeC-CCCHHHHHHHHHHHhcc
Q 001846 954 HLPILAMTADVIHATFDECLKCGMDGY------VSK-PFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 954 ~~PIIalTa~~~~~~~~~~~~aG~d~y------l~K-P~~~~~L~~~l~~~l~~ 1000 (1006)
.+|||++.+-.+.++..+++.+|||.. +.+ |.-..++.+.|.+|++.
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 589999999999999999999999954 566 88888899999988864
No 451
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.54 E-value=6.1e+02 Score=27.49 Aligned_cols=84 Identities=20% Similarity=0.187 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCCeEEEeC--CHHHHHHHhcCCCCCcEEEEeCCCCCCCHH-----HHHHHHHhhhchhhhhhccCCCCcC
Q 001846 873 MVAAGALKKFGATVECAA--SAKAALDKLQSPHCFDACFMDIQMPEMDGF-----EATRRIRQMESKANEQMMNGGSSVD 945 (1006)
Q Consensus 873 ~~l~~~L~~~G~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-----e~~~~IR~~e~~~~~~~~~~~~~~~ 945 (1006)
--..+.|-+.||.|.... |.--| +.+.+-. -..+|=+--|.-+|. ..++-|++
T Consensus 120 l~Aae~Lv~eGF~VlPY~~dD~v~a-rrLee~G--caavMPl~aPIGSg~G~~n~~~l~iiie----------------- 179 (262)
T COG2022 120 LKAAEQLVKEGFVVLPYTTDDPVLA-RRLEEAG--CAAVMPLGAPIGSGLGLQNPYNLEIIIE----------------- 179 (262)
T ss_pred HHHHHHHHhCCCEEeeccCCCHHHH-HHHHhcC--ceEeccccccccCCcCcCCHHHHHHHHH-----------------
Confidence 345567778899987544 44434 3343322 467788888877664 34555554
Q ss_pred CCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 946 GTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 946 ~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
...+|||+=.+-..+.+...+++.|+|+.|.
T Consensus 180 ------~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 180 ------EADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred ------hCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 2279999999999999999999999999975
No 452
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.51 E-value=6.3e+02 Score=27.12 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCHHHHHHHhcCCCCCc-EEEEeCC-CC-C-CCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCC
Q 001846 890 ASAKAALDKLQSPHCFD-ACFMDIQ-MP-E-MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVI 965 (1006)
Q Consensus 890 ~~g~eAl~~l~~~~~~D-lIlmDi~-MP-~-mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~ 965 (1006)
.+..+..+.+.. . ++ +++.|+. +- + ..-++++++|++. ..+||++=-+-.+
T Consensus 30 ~dp~~~a~~~~~-~-~~~l~ivDldga~~g~~~n~~~i~~i~~~-----------------------~~~pv~~gGGIrs 84 (228)
T PRK04128 30 GDPVEIALRFSE-Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE-----------------------TGLKVQVGGGLRT 84 (228)
T ss_pred CCHHHHHHHHHH-h-CCEEEEEECcchhcCCcchHHHHHHHHhh-----------------------CCCCEEEcCCCCC
Confidence 467777777765 3 55 7778876 21 2 1347888888752 2578887767778
Q ss_pred HHhHHHHHHCCCCEEEe--CCCCHHHHHHHHHHH
Q 001846 966 HATFDECLKCGMDGYVS--KPFEEENLYRELAKF 997 (1006)
Q Consensus 966 ~~~~~~~~~aG~d~yl~--KP~~~~~L~~~l~~~ 997 (1006)
.++.+++++.|++..+. .-++++-+.+..++|
T Consensus 85 ~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~ 118 (228)
T PRK04128 85 YESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEF 118 (228)
T ss_pred HHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHc
Confidence 89999999999998775 345666555555554
No 453
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=20.48 E-value=9.6e+02 Score=26.10 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=62.5
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeC--CHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhc
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAA--SAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMM 938 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~ 938 (1006)
+++++.+.+......... .....|.... +.++..+.+.. .|++++=-...+.-|.-+++.+.
T Consensus 222 ~l~i~G~~~~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~---ad~~i~ps~~~e~~~~~~~Ea~a----------- 285 (359)
T cd03823 222 ELVIVGNGLELEEESYEL--EGDPRVEFLGAYPQEEIDDFYAE---IDVLVVPSIWPENFPLVIREALA----------- 285 (359)
T ss_pred EEEEEcCchhhhHHHHhh--cCCCeEEEeCCCCHHHHHHHHHh---CCEEEEcCcccCCCChHHHHHHH-----------
Confidence 677777665443322211 2233444433 34666665543 58877532223334445555543
Q ss_pred cCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Q 001846 939 NGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKS 1000 (1006)
Q Consensus 939 ~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~ 1000 (1006)
..+|||+.... ...+.+..|.++++.+|-+.++|.+++.+++..
T Consensus 286 --------------~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 286 --------------AGVPVIASDIG----GMAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred --------------CCCCEEECCCC----CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 25788863322 234456678889999999999999999998863
No 454
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=20.47 E-value=3.8e+02 Score=30.12 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=46.8
Q ss_pred eEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCC
Q 001846 885 TVECAASAKAALDKLQSPHCFDACFMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADV 964 (1006)
Q Consensus 885 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~ 964 (1006)
....+.+.+||.+.++. .+|+|++|=.-| |-++++-++.. .+ .+|..++..
T Consensus 211 IeVEv~sleea~ea~~~--gaDiI~LDn~s~-----e~~~~av~~~~---------------------~~-~~ieaSGGI 261 (296)
T PRK09016 211 VEVEVENLDELDQALKA--GADIIMLDNFTT-----EQMREAVKRTN---------------------GR-ALLEVSGNV 261 (296)
T ss_pred EEEEeCCHHHHHHHHHc--CCCEEEeCCCCh-----HHHHHHHHhhc---------------------CC-eEEEEECCC
Confidence 34568899999999875 479999995443 22232222110 12 367788899
Q ss_pred CHHhHHHHHHCCCCEEE
Q 001846 965 IHATFDECLKCGMDGYV 981 (1006)
Q Consensus 965 ~~~~~~~~~~aG~d~yl 981 (1006)
+.+...+..+.|+|-..
T Consensus 262 ~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 262 TLETLREFAETGVDFIS 278 (296)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999999553
No 455
>PRK07695 transcriptional regulator TenI; Provisional
Probab=20.45 E-value=5.4e+02 Score=26.76 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=42.8
Q ss_pred eCCHHHHHHHhcCCCCCcEEEEeCCCC-----C--CCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEe
Q 001846 889 AASAKAALDKLQSPHCFDACFMDIQMP-----E--MDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961 (1006)
Q Consensus 889 a~~g~eAl~~l~~~~~~DlIlmDi~MP-----~--mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalT 961 (1006)
+.+.+++.+..+. ..|.|+..--.| + ..|++.++++++. .++||+++-
T Consensus 102 ~~s~e~a~~a~~~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-----------------------~~ipvia~G 156 (201)
T PRK07695 102 VHSLEEAIQAEKN--GADYVVYGHVFPTDCKKGVPARGLEELSDIARA-----------------------LSIPVIAIG 156 (201)
T ss_pred CCCHHHHHHHHHc--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-----------------------CCCCEEEEc
Confidence 4566665544332 367776543221 1 2367777777641 258999876
Q ss_pred cCCCHHhHHHHHHCCCCEE
Q 001846 962 ADVIHATFDECLKCGMDGY 980 (1006)
Q Consensus 962 a~~~~~~~~~~~~aG~d~y 980 (1006)
+- ..++..+++++|++++
T Consensus 157 GI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 157 GI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CC-CHHHHHHHHHcCCCEE
Confidence 65 7888999999999987
No 456
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.39 E-value=3e+02 Score=29.59 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCeEEEeCCHHHHHHHhcCCCCCcEEEEeCCCCCC-CHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEe
Q 001846 883 GATVECAASAKAALDKLQSPHCFDACFMDIQMPEM-DGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMT 961 (1006)
Q Consensus 883 G~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalT 961 (1006)
|+.-..-.+..++++.+.+. .-.+|++|+.=-+| .|++ .+.+. ..++|||+--
T Consensus 136 gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d---~l~~~----------------------~~~~pviasG 189 (228)
T PRK04128 136 GWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE---EIERF----------------------WGDEEFIYAG 189 (228)
T ss_pred CCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH---HHHHh----------------------cCCCCEEEEC
Confidence 44444455667777776543 34799999987765 7777 33221 1258999999
Q ss_pred cCCCHHhHHHHHHCCCCEEEe
Q 001846 962 ADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 962 a~~~~~~~~~~~~aG~d~yl~ 982 (1006)
+-.+.++..++.+.|+++.+.
T Consensus 190 Gv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 190 GVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 999999999999999998764
No 457
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.34 E-value=1e+03 Score=27.65 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=42.0
Q ss_pred CHHHHHHHhcCCCCCcEEEEeCC-------CCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecC
Q 001846 891 SAKAALDKLQSPHCFDACFMDIQ-------MPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTAD 963 (1006)
Q Consensus 891 ~g~eAl~~l~~~~~~DlIlmDi~-------MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~ 963 (1006)
+..+-.+.+.+ ...|+|.++-. .+.-+-.++.+.+++ ..+|||+ -.-
T Consensus 142 ~~~e~a~~l~e-aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~------------------------~~ipVIa-G~V 195 (368)
T PRK08649 142 RAQELAPTVVE-AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE------------------------LDVPVIV-GGC 195 (368)
T ss_pred CHHHHHHHHHH-CCCCEEEEeccchhhhccCCcCCHHHHHHHHHH------------------------CCCCEEE-eCC
Confidence 34555555554 45899998653 222244555555543 1589988 334
Q ss_pred CCHHhHHHHHHCCCCEEEe
Q 001846 964 VIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 964 ~~~~~~~~~~~aG~d~yl~ 982 (1006)
.+.+...+++++|+|..+.
T Consensus 196 ~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 196 VTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 5677888899999999854
No 458
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.30 E-value=5.9e+02 Score=31.44 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=62.8
Q ss_pred ceEEEe--cCcHHHH---HHHHHHHhhcCCeEEEeCCHHHHHHH-h-------cCCCCCcEEEEeCCCCCCCHHHHHHHH
Q 001846 860 KKILVV--DDNGVNR---MVAAGALKKFGATVECAASAKAALDK-L-------QSPHCFDACFMDIQMPEMDGFEATRRI 926 (1006)
Q Consensus 860 ~~ILvV--DDn~~n~---~~l~~~L~~~G~~v~~a~~g~eAl~~-l-------~~~~~~DlIlmDi~MP~mdG~e~~~~I 926 (1006)
.+|.|| -+.+... ..+...|++.|+++....+....+.. . .....+|+|+. =+-|| .+++..
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T~L~aa 365 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDG-TVLRAS 365 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcH-HHHHHH
Confidence 467777 2333333 34455677789888876543332221 0 00113566654 26788 456666
Q ss_pred HhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccC
Q 001846 927 RQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEENLYRELAKFFKSK 1001 (1006)
Q Consensus 927 R~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~l~~~ 1001 (1006)
|... ...+||+.+. .|=-+||+ .++++++.+.|.++++..
T Consensus 366 ~~~~---------------------~~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 366 KLVN---------------------GEEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred HHhc---------------------CCCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHcCC
Confidence 6532 2368999875 36678988 799999999999988653
No 459
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.11 E-value=6.4e+02 Score=26.47 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEE------EEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCc
Q 001846 871 NRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDAC------FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSV 944 (1006)
Q Consensus 871 n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlI------lmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~ 944 (1006)
...++..+=+++-.-.--+++-+||+...+. .||+| ...-..+.-.-|++++++++.
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~~--G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~--------------- 143 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAEL--GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA--------------- 143 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT--T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHHc--CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---------------
Q ss_pred CCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEe
Q 001846 945 DGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVS 982 (1006)
Q Consensus 945 ~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~ 982 (1006)
.+|||+=--..+++...+|+++|++..+.
T Consensus 144 ---------~~pvIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 144 ---------DVPVIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp ---------TSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred ---------CCcEeecCCCCCHHHHHHHHhcCCeEEEE
No 460
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.08 E-value=2.5e+02 Score=29.62 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=35.0
Q ss_pred EEeCCCCCCCHHHHHHHHHhhhchhhhhhccCCCCcCCCcccCCCCCcEEEEecCCCHHhHHHHHHCCCCEEEeCCCCHH
Q 001846 909 FMDIQMPEMDGFEATRRIRQMESKANEQMMNGGSSVDGTAKRDELHLPILAMTADVIHATFDECLKCGMDGYVSKPFEEE 988 (1006)
Q Consensus 909 lmDi~MP~mdG~e~~~~IR~~e~~~~~~~~~~~~~~~~~~~~~~~~~PIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~ 988 (1006)
++.+-|-.-+.+++++++|+..+ + -+|..-.-.+.++.+.|.++|++-.++-=++++
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p----------------------~-~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~ 92 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFP----------------------D-LLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPE 92 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHT----------------------T-SEEEEES--SHHHHHHHHHHT-SEEEESS--HH
T ss_pred EEEEecCCccHHHHHHHHHHHCC----------------------C-CeeEEEeccCHHHHHHHHHcCCCEEECCCCCHH
Confidence 34555666678888888886322 2 144444455678888999999985555334444
Q ss_pred HHHH
Q 001846 989 NLYR 992 (1006)
Q Consensus 989 ~L~~ 992 (1006)
-+..
T Consensus 93 v~~~ 96 (196)
T PF01081_consen 93 VIEY 96 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 461
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.07 E-value=3.6e+02 Score=28.25 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=35.1
Q ss_pred eEEEecCcHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHhcCCCCCcEEEE
Q 001846 861 KILVVDDNGVNRMVAAGALKKFGATVECAASAKAALDKLQSPHCFDACFM 910 (1006)
Q Consensus 861 ~ILvVDDn~~n~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~~DlIlm 910 (1006)
.|+|+|=..-|...+...|++.|+.+....+..+ +. .||.|++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~----l~---~~d~iii 43 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEE----IL---AADGVIL 43 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHH----hc---cCCEEEE
Confidence 3789998889999999999999999999877543 22 3898886
No 462
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=20.03 E-value=84 Score=34.76 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=27.2
Q ss_pred cccccccchhhhcccCcccceeeeecCcchhHHHH---HHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 001846 7 KNHCHSVALKVNEQMGTKIGYTFIQSNRAWLPKAL---VLWIMGMAFISMSIYRGMDEENKIRRKEV 70 (1006)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (1006)
.-||-++.++....-.....-.-....|.|+|+.+ ++-+++..++++.+++....-.+.|++|.
T Consensus 182 ~~GHfslVV~~~~~~~~~~~~~~~~~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eM 248 (278)
T PF06697_consen 182 RQGHFSLVVPSPAPPPAPPPPGAPPRKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEM 248 (278)
T ss_pred cCceEEEEEcCCCCCCCCCCcccccCCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34566677666644322111111113333444422 33333444444555555544444444444
Done!