Query 001848
Match_columns 1005
No_of_seqs 470 out of 1505
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02194 PXA: PXA domain; Int 100.0 8.7E-36 1.9E-40 307.5 18.3 181 106-287 1-184 (185)
2 smart00313 PXA Domain associat 100.0 5.8E-34 1.3E-38 293.2 17.7 173 107-288 2-175 (176)
3 cd06872 PX_SNX19_like_plant Th 99.9 1.2E-23 2.6E-28 200.2 12.1 106 666-771 1-106 (107)
4 cd06877 PX_SNX14 The phosphoin 99.9 1.7E-21 3.7E-26 188.8 12.8 107 665-772 2-119 (119)
5 cd06878 PX_SNX25 The phosphoin 99.9 1.3E-21 2.9E-26 191.6 12.1 107 665-772 8-127 (127)
6 cd07276 PX_SNX16 The phosphoin 99.9 1.6E-21 3.4E-26 186.6 11.7 107 665-772 3-110 (110)
7 cd06870 PX_CISK The phosphoino 99.9 2.8E-21 6.1E-26 184.5 11.3 104 667-772 4-109 (109)
8 cd07279 PX_SNX20_21_like The p 99.9 3E-21 6.5E-26 185.1 11.5 105 666-771 1-111 (112)
9 cd06873 PX_SNX13 The phosphoin 99.9 4.4E-21 9.5E-26 186.2 12.5 109 663-772 2-120 (120)
10 cd07301 PX_SNX21 The phosphoin 99.8 1.2E-20 2.7E-25 181.0 11.5 104 667-771 2-111 (112)
11 cd07280 PX_YPT35 The phosphoin 99.8 2.5E-20 5.4E-25 180.9 11.5 104 667-771 4-120 (120)
12 cd06875 PX_IRAS The phosphoino 99.8 5.4E-20 1.2E-24 177.6 12.4 103 665-773 3-106 (116)
13 cd06861 PX_Vps5p The phosphoin 99.8 4.9E-20 1.1E-24 176.9 11.8 104 667-771 2-111 (112)
14 cd06882 PX_p40phox The phospho 99.8 5.5E-20 1.2E-24 179.3 12.3 110 664-776 2-122 (123)
15 cd06897 PX_SNARE The phosphoin 99.8 6.4E-20 1.4E-24 174.4 11.5 102 666-772 1-108 (108)
16 cd06871 PX_MONaKA The phosphoi 99.8 1.6E-19 3.4E-24 175.4 12.1 109 661-777 3-113 (120)
17 cd07300 PX_SNX20 The phosphoin 99.8 1.9E-19 4.1E-24 173.3 11.5 104 668-772 3-112 (114)
18 cd06880 PX_SNX22 The phosphoin 99.8 2.8E-19 6.1E-24 171.1 12.2 101 666-773 1-103 (110)
19 cd06867 PX_SNX41_42 The phosph 99.8 1.6E-19 3.5E-24 173.2 10.4 100 668-772 2-112 (112)
20 cd06859 PX_SNX1_2_like The pho 99.8 2.2E-19 4.7E-24 172.4 10.9 105 666-771 1-113 (114)
21 cd06886 PX_SNX27 The phosphoin 99.8 2.3E-19 4.9E-24 170.7 10.9 100 666-771 4-105 (106)
22 cd07282 PX_SNX2 The phosphoino 99.8 2.6E-19 5.6E-24 174.8 11.5 106 666-771 1-123 (124)
23 cd06898 PX_SNX10 The phosphoin 99.8 3.3E-19 7.2E-24 171.4 11.9 103 668-771 2-112 (113)
24 cd07295 PX_Grd19 The phosphoin 99.8 3.8E-19 8.3E-24 171.7 12.2 107 666-773 2-115 (116)
25 cd07281 PX_SNX1 The phosphoino 99.8 3.3E-19 7.1E-24 174.1 11.5 106 666-771 1-123 (124)
26 cd06864 PX_SNX4 The phosphoino 99.8 3E-19 6.6E-24 175.5 11.1 106 666-771 1-128 (129)
27 cd07293 PX_SNX3 The phosphoino 99.8 5.2E-19 1.1E-23 172.4 12.5 107 666-772 2-121 (123)
28 cd06865 PX_SNX_like The phosph 99.8 3.4E-19 7.4E-24 173.1 11.1 104 668-771 2-119 (120)
29 cd07277 PX_RUN The phosphoinos 99.8 4.4E-19 9.5E-24 171.7 10.9 104 666-772 1-106 (118)
30 cd06862 PX_SNX9_18_like The ph 99.8 4.9E-19 1.1E-23 173.0 11.2 103 667-773 2-108 (125)
31 cd07286 PX_SNX18 The phosphoin 99.8 4.2E-19 9E-24 173.3 10.6 102 667-772 2-107 (127)
32 cd06876 PX_MDM1p The phosphoin 99.8 7.1E-19 1.5E-23 173.7 12.4 111 655-770 13-132 (133)
33 cd06894 PX_SNX3_like The phosp 99.8 6.8E-19 1.5E-23 171.7 12.0 107 666-772 2-121 (123)
34 cd06860 PX_SNX7_30_like The ph 99.8 6.8E-19 1.5E-23 170.0 11.7 105 667-771 2-115 (116)
35 cd06868 PX_HS1BP3 The phosphoi 99.8 6.4E-19 1.4E-23 171.1 11.0 104 666-772 2-120 (120)
36 cd06863 PX_Atg24p The phosphoi 99.8 9.2E-19 2E-23 169.4 11.9 106 666-771 1-117 (118)
37 cd07283 PX_SNX30 The phosphoin 99.8 1.1E-18 2.4E-23 168.4 11.8 105 667-771 2-115 (116)
38 cd06866 PX_SNX8_Mvp1p_like The 99.8 1.7E-18 3.8E-23 164.4 10.7 88 680-771 15-104 (105)
39 cd07285 PX_SNX9 The phosphoino 99.8 1.6E-18 3.6E-23 168.8 10.7 103 667-773 2-109 (126)
40 cd07284 PX_SNX7 The phosphoino 99.8 2.4E-18 5.3E-23 166.1 11.7 106 666-771 1-115 (116)
41 cd06881 PX_SNX15_like The phos 99.8 2.8E-18 6.1E-23 166.0 10.8 101 667-771 4-116 (117)
42 cd07294 PX_SNX12 The phosphoin 99.8 5.7E-18 1.2E-22 166.8 13.1 108 666-773 4-124 (132)
43 cd06883 PX_PI3K_C2 The phospho 99.8 4E-18 8.6E-23 163.0 11.7 103 668-771 2-108 (109)
44 cd06885 PX_SNX17_31 The phosph 99.7 2.6E-18 5.7E-23 162.9 9.2 99 667-771 1-102 (104)
45 cd06893 PX_SNX19 The phosphoin 99.7 3.6E-18 7.7E-23 168.4 10.2 106 665-771 3-131 (132)
46 cd06874 PX_KIF16B_SNX23 The ph 99.7 8.3E-18 1.8E-22 164.7 11.6 98 666-765 1-101 (127)
47 cd07287 PX_RPK118_like The pho 99.7 8.3E-18 1.8E-22 162.8 11.3 100 668-771 5-117 (118)
48 cd07288 PX_SNX15 The phosphoin 99.7 1.7E-17 3.7E-22 160.7 10.8 101 667-771 4-117 (118)
49 cd06884 PX_PI3K_C2_68D The pho 99.7 6.9E-17 1.5E-21 154.8 11.9 104 667-771 3-110 (111)
50 cd06879 PX_UP1_plant The phosp 99.7 4.5E-17 9.7E-22 160.3 10.4 92 680-772 41-138 (138)
51 cd06895 PX_PLD The phosphoinos 99.7 5.7E-17 1.2E-21 161.2 10.6 106 664-772 2-140 (140)
52 cd06869 PX_UP2_fungi The phosp 99.7 1.2E-16 2.5E-21 155.1 11.5 86 679-771 29-118 (119)
53 cd06093 PX_domain The Phox Hom 99.7 2.4E-16 5.2E-21 146.7 12.0 102 668-770 2-105 (106)
54 cd06888 PX_FISH The phosphoino 99.7 2.6E-16 5.7E-21 152.4 12.2 104 667-771 3-118 (119)
55 cd07296 PX_PLD1 The phosphoino 99.7 2.2E-16 4.7E-21 154.9 11.2 108 664-772 2-135 (135)
56 smart00312 PX PhoX homologous 99.7 3.8E-16 8.3E-21 146.4 9.6 92 679-770 8-105 (105)
57 cd07289 PX_PI3K_C2_alpha The p 99.6 1.1E-15 2.3E-20 145.6 11.2 103 668-771 2-108 (109)
58 cd06887 PX_p47phox The phospho 99.6 1.4E-15 3E-20 147.2 12.2 103 667-773 3-117 (118)
59 PF00787 PX: PX domain; Inter 99.6 1.3E-15 2.9E-20 143.3 9.5 106 665-772 3-113 (113)
60 cd07290 PX_PI3K_C2_beta The ph 99.6 6.4E-15 1.4E-19 140.3 11.8 101 669-771 3-108 (109)
61 cd06890 PX_Bem1p The phosphoin 99.6 8.5E-15 1.8E-19 140.8 11.4 99 667-771 2-111 (112)
62 cd06891 PX_Vps17p The phosphoi 99.6 1.6E-14 3.4E-19 143.2 11.0 106 663-771 27-139 (140)
63 KOG2527 Sorting nexin SNX11 [I 99.5 8.9E-15 1.9E-19 140.7 6.0 108 665-773 17-131 (144)
64 PF08628 Nexin_C: Sorting nexi 99.5 4.5E-14 9.7E-19 135.8 7.2 59 941-999 1-60 (113)
65 cd07297 PX_PLD2 The phosphoino 99.5 2.8E-13 6E-18 130.6 9.9 107 664-772 2-130 (130)
66 KOG1259 Nischarin, modulator o 99.4 1.4E-13 3.1E-18 148.8 7.3 119 680-806 24-146 (490)
67 cd07292 PX_SNX6 The phosphoino 99.4 1.3E-12 2.7E-17 128.0 10.0 102 666-771 3-140 (141)
68 cd07291 PX_SNX5 The phosphoino 99.4 1.2E-12 2.6E-17 128.3 9.5 102 666-771 3-140 (141)
69 cd06889 PX_NoxO1 The phosphoin 99.4 3.4E-12 7.3E-17 123.7 11.8 102 665-771 5-120 (121)
70 cd06892 PX_SNX5_like The phosp 99.4 2.6E-12 5.6E-17 127.2 9.7 101 667-771 4-140 (141)
71 KOG2273 Membrane coat complex 99.2 5.7E-11 1.2E-15 141.4 10.1 108 666-773 110-228 (503)
72 cd06896 PX_PI3K_C2_gamma The p 99.1 2.2E-10 4.9E-15 106.2 8.5 84 684-770 13-99 (101)
73 KOG2528 Sorting nexin SNX9/SH3 98.9 1.5E-09 3.3E-14 122.5 6.9 112 665-780 185-302 (490)
74 KOG2101 Intermediate filament- 98.8 2.3E-08 5E-13 114.5 12.9 221 676-996 128-362 (362)
75 COG5391 Phox homology (PX) dom 98.7 1.1E-07 2.3E-12 113.1 13.1 100 663-762 130-243 (524)
76 KOG3784 Sorting nexin protein 98.4 4.6E-07 9.9E-12 102.1 6.5 89 679-773 13-103 (407)
77 KOG0905 Phosphoinositide 3-kin 98.0 1.3E-05 2.8E-10 99.2 9.6 106 666-772 1376-1485(1639)
78 KOG4773 NADPH oxidase [Energy 97.9 1.1E-05 2.5E-10 89.5 4.3 108 663-773 19-138 (386)
79 cd07298 PX_RICS The phosphoino 97.4 0.00053 1.2E-08 65.4 8.0 82 683-770 27-114 (115)
80 cd07278 PX_RICS_like The phosp 96.9 0.0035 7.6E-08 59.7 8.2 86 680-771 23-114 (114)
81 cd07299 PX_TCGAP The phosphoin 96.9 0.0036 7.7E-08 59.5 7.9 84 681-770 23-112 (113)
82 KOG2101 Intermediate filament- 92.9 0.079 1.7E-06 61.2 3.5 41 241-282 1-42 (362)
83 KOG1660 Sorting nexin SNX6/TFA 88.5 0.82 1.8E-05 52.0 6.1 78 696-773 55-164 (399)
84 PLN02866 phospholipase D 84.3 1.3 2.9E-05 57.0 5.5 90 683-773 32-172 (1068)
85 KOG1329 Phospholipase D1 [Lipi 53.5 13 0.00028 47.4 4.0 102 664-773 45-165 (887)
86 PF08405 Calici_PP_N: Viral po 37.3 79 0.0017 36.1 6.5 73 915-995 194-280 (358)
87 PF11674 DUF3270: Protein of u 27.2 1.4E+02 0.003 28.4 5.4 36 21-56 44-79 (90)
88 PF03649 UPF0014: Uncharacteri 23.7 1.8E+02 0.0039 32.5 6.5 49 9-59 32-80 (250)
89 PF04304 DUF454: Protein of un 23.4 2E+02 0.0043 25.4 5.5 42 17-60 27-68 (71)
90 PF11872 DUF3392: Protein of u 23.4 64 0.0014 31.5 2.5 33 939-971 11-46 (106)
91 PF09581 Spore_III_AF: Stage I 20.1 1.1E+02 0.0024 31.9 3.8 43 234-277 6-50 (188)
No 1
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=100.00 E-value=8.7e-36 Score=307.48 Aligned_cols=181 Identities=31% Similarity=0.606 Sum_probs=158.9
Q ss_pred ChhHHHHHHHHHHHHHHhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 001848 106 SPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT 185 (1005)
Q Consensus 106 sp~Vd~aL~~li~~IIrDFV~~sWY~~IS~D~eF~~elr~~L~~~i~~L~~Rl~~VD~~~lL~~~lv~ll~~HL~~yr~A 185 (1005)
||.|+++|++++++|+|||| .+||+.||+|++|+++++..|++++.++..|+++||+.++++.+++++++.|++.||.|
T Consensus 1 s~~vd~~l~~li~~I~rdfV-~sWY~~Is~d~~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl~~~r~a 79 (185)
T PF02194_consen 1 SPEVDEALHELIDLILRDFV-NSWYSKISPDPEFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHLRDYREA 79 (185)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCcchhhhhHHHHHHHHhcC-CCCcc-CCChHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhH
Q 001848 186 QAKIEKQHSEPLTIERRDIEIRCVLAAEN-KLHPA-LFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACA 263 (1005)
Q Consensus 186 ~~~v~~~~~~~ls~e~rd~~l~~~l~~~~-~LHpA-L~s~e~E~~YLR~l~e~LL~~LLP~~d~~s~~~r~LLREILA~~ 263 (1005)
+++.+.........+.....+..+..... .+||| +.+++.|.+|||.+++.||+.+||+++.+|++++.|+||||||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~a~~~~~~~e~~ylr~l~~~ll~~llp~~~~~s~~~~~l~rEILa~~ 159 (185)
T PF02194_consen 80 RERLSEDSSSSSQSESSELDLFIASEYEKAHLHPAVLSSPESELEYLRKLSERLLPFLLPPEELSSPPVRLLLREILACQ 159 (185)
T ss_pred HhhhccccccccccchhhhHHHHHHhccccCCCchhccccchHHHHHHHHHHHHHHHHCChhhccccHHHHHHHHHHHHH
Confidence 99984332221111111222333333334 49999 88999999999999999999999999999999999999999999
Q ss_pred hHHhhhc-cCChhHHHHHHHHHHHH
Q 001848 264 VMRPVLN-LANPRFINERIESLAVS 287 (1005)
Q Consensus 264 VL~Pli~-LSDPD~INq~Ii~ll~~ 287 (1005)
||.|+|+ +|||||||++|++++++
T Consensus 160 VL~p~i~~lsdPd~iN~~ii~~~~~ 184 (185)
T PF02194_consen 160 VLLPLIDKLSDPDFINQLIIKLLEK 184 (185)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 99999999999998875
No 2
>smart00313 PXA Domain associated with PX domains. unpubl. observations
Probab=100.00 E-value=5.8e-34 Score=293.24 Aligned_cols=173 Identities=22% Similarity=0.343 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHHHHHhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 001848 107 PVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQ 186 (1005)
Q Consensus 107 p~Vd~aL~~li~~IIrDFV~~sWY~~IS~D~eF~~elr~~L~~~i~~L~~Rl~~VD~~~lL~~~lv~ll~~HL~~yr~A~ 186 (1005)
+.|+++|++++++|||||| .+||++||+|++|+++++..|++++.+|++|++++|++++++.+++..+..|++..++|.
T Consensus 2 ~~i~~~L~~li~~IirdfV-~sWY~~is~d~~F~~~i~~~l~~~~~~l~~Rl~~vD~~~ll~~~i~~~~~~~~~~a~~a~ 80 (176)
T smart00313 2 AQLEEPLQLLISKIIRDYV-QGWYKGVSEDPSFLREIEQTLEYILRQLYRRLSRQDSAHLILYEILKNLISTITNALEAV 80 (176)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999 699999999999999999999999999999999999999997766666666665444332
Q ss_pred HHhhhccCCCcchhhhhHHHHHHHHhcCCCCccCCChHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhHhHH
Q 001848 187 AKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMR 266 (1005)
Q Consensus 187 ~~v~~~~~~~ls~e~rd~~l~~~l~~~~~LHpAL~s~e~E~~YLR~l~e~LL~~LLP~~d~~s~~~r~LLREILA~~VL~ 266 (1005)
.+... . .. ....++..+ ....+|||+.+++.|.+|||.+++.||+.+||+++.+|+++|.|+||||||+||.
T Consensus 81 ~~~~~--~-~~----~~~~~~~~~-~~~~lh~al~~~~~e~~ylR~~~~~lL~~lLp~~~~~s~~~r~llREIla~~VL~ 152 (176)
T smart00313 81 LRFAS--P-QI----PSTEIDLQY-AETAIHKALSSPSNELTYRRQLVEMLLKFLLPEDSLCSRLHRCLLREVLAMQVIL 152 (176)
T ss_pred HcccC--C-cC----ccccHHHHH-hhccCChhhcCcchHHHHHHHHHHHHHHHhCCHhhccChHHHHHHHHHHHHHHHH
Confidence 22110 0 00 111223323 3456999999999999999999999999999999999999999999999999999
Q ss_pred hhhc-cCChhHHHHHHHHHHHHH
Q 001848 267 PVLN-LANPRFINERIESLAVSM 288 (1005)
Q Consensus 267 Pli~-LSDPD~INq~Ii~ll~~~ 288 (1005)
|+|+ +|||||||++|++++++.
T Consensus 153 p~i~~lsdPd~iN~~Ii~l~~~~ 175 (176)
T smart00313 153 PLITHLSDPDTINLCIILLFSSS 175 (176)
T ss_pred HHHHHccCchHHHHHHHHHhhcc
Confidence 9999 999999999999998764
No 3
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.90 E-value=1.2e-23 Score=200.16 Aligned_cols=106 Identities=63% Similarity=1.064 Sum_probs=99.0
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHcccCCCCCCCCccccCCCCCHHHHHHHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKL 745 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~~p~~~p~LP~Kk~f~~~~d~~flEkRr~~ 745 (1005)
++|+|.+++++++|+++|++|.|+|....+..|+|.||||||++||++|++++...++||+|+++.++++++|||+||.+
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~~~~~~~~lP~K~~~~~~~~~~fie~Rr~~ 80 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKEVPKYNLELPPKRFLSSSLDGAFIEERCKL 80 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHhccCCCCCCCCccccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999999865679999999999999999999877667899999998568999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhhhccccc
Q 001848 746 LDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 746 LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
||.||+.|+++|.+++++.|++||..
T Consensus 81 Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 81 LDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 99999999999999999999999975
No 4
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.86 E-value=1.7e-21 Score=188.78 Aligned_cols=107 Identities=23% Similarity=0.461 Sum_probs=97.6
Q ss_pred eEEEEEeceEEEeC--CCCCeEEEEEEEEeC-------CCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCC
Q 001848 665 KLRCEVLGANIVKS--DSRTFAVYAIAVTDS-------NNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTG 733 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~--g~k~ytvY~I~V~~~-------~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~ 733 (1005)
.++++|+++++..+ +++.|++|.|+|+.. ....|+|.||||||.+||.+|++ |+. ..|+||+|+++ ++
T Consensus 2 ~~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~-~~ 80 (119)
T cd06877 2 AWRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIF-GP 80 (119)
T ss_pred cceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCccc-CC
Confidence 47899999998866 788999999999963 14689999999999999999998 887 47899999999 88
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 734 ~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
++++|+++||.+||.||+.|+++|.++.++.|++||+.+
T Consensus 81 ~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 81 KSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 999999999999999999999999999999999999863
No 5
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.86 E-value=1.3e-21 Score=191.57 Aligned_cols=107 Identities=26% Similarity=0.491 Sum_probs=97.1
Q ss_pred eEEEEEeceEEEeCCCCCeEEEEEEEEeCC---------CCeEEEEeccchHHHHHHHHHc-ccCC---CCCCCCccccC
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN---------NNSWSIKRRFRHFEELHRRLKF-FQEY---NLHLPPKHFLS 731 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~---------~~~w~V~RRYSeF~~Lh~~Lk~-~p~~---~p~LP~Kk~f~ 731 (1005)
+++|.|++++++.++++.|++|.|.|+..+ ...|+|.||||||++||++|++ ||.. .+|+|||++|
T Consensus 8 ~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~- 86 (127)
T cd06878 8 KWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWF- 86 (127)
T ss_pred cceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCcccc-
Confidence 589999999998889999999999999762 3569999999999999999998 8763 4667789998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 732 TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 732 ~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
++++++|+|+||.+||.|||.|+++|.++.++.|++||+.+
T Consensus 87 ~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 87 KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSPS 127 (127)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCCC
Confidence 88999999999999999999999999999999999999864
No 6
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.86 E-value=1.6e-21 Score=186.57 Aligned_cols=107 Identities=27% Similarity=0.559 Sum_probs=97.9
Q ss_pred eEEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCCCCCCCCccccCCCCCHHHHHHHH
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
.+++.|.+++++++ .+.|++|.|+|...++..|.|.||||||.+||.+|++ ||...|+||+|++|+++++++||++||
T Consensus 3 ~~~~~i~~~~~~~~-~~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~fie~Rr 81 (110)
T cd07276 3 PIRPPILGYEVMEE-RARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPGFRLSLPPKRWFKDNFDPDFLEERQ 81 (110)
T ss_pred CccceeeeEEEeec-CCCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCCCCCCCCCcceecccCCHHHHHHHH
Confidence 35889999998876 5689999999998756899999999999999999998 988778999999984479999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
.+||.||+.|+++|.+++++.+++||+++
T Consensus 82 ~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 82 LGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 99999999999999999999999999864
No 7
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.85 E-value=2.8e-21 Score=184.51 Aligned_cols=104 Identities=27% Similarity=0.513 Sum_probs=95.0
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCCCCCCCCccccCC-CCCHHHHHHHHH
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLST-GLDVSVIQERCK 744 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~~p~LP~Kk~f~~-~~d~~flEkRr~ 744 (1005)
.+.|+.+....+++++|++|.|+|..+ +..|.|+||||||++||++|++ ||...++||+|++| + +++++||++||.
T Consensus 4 ~~~i~~~~~~~~~~~~~~~Y~I~v~~~-~~~~~v~RRYseF~~L~~~L~~~~~~~~~~lP~K~~~-~~~~~~~~ie~Rr~ 81 (109)
T cd06870 4 SVSIPSSDEDREKKKRFTVYKVVVSVG-RSSWFVFRRYAEFDKLYESLKKQFPASNLKIPGKRLF-GNNFDPDFIKQRRA 81 (109)
T ss_pred ceeeccceeeccCCCCeEEEEEEEEEC-CeEEEEEeehHHHHHHHHHHHHHCcccCcCCCCCccc-ccCCCHHHHHHHHH
Confidence 356777776667789999999999987 7899999999999999999998 99877789999999 7 899999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 745 ~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
+||.||+.|+++|.+++++.|.+||..+
T Consensus 82 ~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 82 GLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 9999999999999999999999999863
No 8
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.85 E-value=3e-21 Score=185.13 Aligned_cols=105 Identities=26% Similarity=0.514 Sum_probs=97.5
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC---CCeEEEEeccchHHHHHHHHHc-ccCC--CCCCCCccccCCCCCHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN---NNSWSIKRRFRHFEELHRRLKF-FQEY--NLHLPPKHFLSTGLDVSVI 739 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~---~~~w~V~RRYSeF~~Lh~~Lk~-~p~~--~p~LP~Kk~f~~~~d~~fl 739 (1005)
++|.|+++.++++++++|++|.|+|.... ...|.|+||||||++||++|++ ||.. .|+||+|+++ ++++++||
T Consensus 1 ~~~~i~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~-~~~~~~~i 79 (112)
T cd07279 1 LKFEIVSARTVKEGEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLM-GNFSSELI 79 (112)
T ss_pred CeEEeccCeEEcCCCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeec-ccCCHHHH
Confidence 47999999999999999999999998753 3579999999999999999997 9873 5789999998 89999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 740 EkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
++||.+||.||+.|+++|.+++++.|++||..
T Consensus 80 e~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 80 AERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred HHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 99999999999999999999999999999975
No 9
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.85 E-value=4.4e-21 Score=186.24 Aligned_cols=109 Identities=38% Similarity=0.636 Sum_probs=99.3
Q ss_pred ceeEEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCH
Q 001848 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDV 736 (1005)
Q Consensus 663 ~~~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~ 736 (1005)
.++++|.|+++++++++++.|++|.|+|.... ...|+|.||||||.+||++|++ ||. ..|+||+|++| +++++
T Consensus 2 ~~~~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~-~~~~~ 80 (120)
T cd06873 2 KFKLTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTF-NNLDR 80 (120)
T ss_pred CcEEEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCccc-CCCCH
Confidence 35799999999999999999999999998742 3689999999999999999998 887 47899999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCc----hhhhcccccc
Q 001848 737 SVIQERCKLLDRYLKMLLQLPTVSGS----IEVWDFLSVD 772 (1005)
Q Consensus 737 ~flEkRr~~LE~YLq~Ll~~p~l~~s----~~l~~FL~~~ 772 (1005)
+|+++|+.+||.||+.|+++|.++++ ..+.+||+.+
T Consensus 81 ~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~~ 120 (120)
T cd06873 81 AFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEPG 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999 5778888753
No 10
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.84 E-value=1.2e-20 Score=180.98 Aligned_cols=104 Identities=28% Similarity=0.500 Sum_probs=95.4
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCC---CCeEEEEeccchHHHHHHHHHc-ccCC--CCCCCCccccCCCCCHHHHH
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN---NNSWSIKRRFRHFEELHRRLKF-FQEY--NLHLPPKHFLSTGLDVSVIQ 740 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~---~~~w~V~RRYSeF~~Lh~~Lk~-~p~~--~p~LP~Kk~f~~~~d~~flE 740 (1005)
.+.|.++.++++|.++|++|.|.|...+ +..|.|+||||||++||++|++ ||.. .++||+|+++ ++++++||+
T Consensus 2 ~~~v~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~-~~~~~~~ie 80 (112)
T cd07301 2 LFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLR-KNFTAETIA 80 (112)
T ss_pred EEEECCCeEeccCCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCccc-CCCCHHHHH
Confidence 5789999999999999999999998542 5689999999999999999997 8874 3689999998 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 741 kRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+||.+||.||+.|+++|.++.++.|++||..
T Consensus 81 ~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 81 KRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 9999999999999999999999999999975
No 11
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.83 E-value=2.5e-20 Score=180.90 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=95.6
Q ss_pred EEEEeceEEEeCC--CCCeEEEEEEEEeCC--CCeEEEEeccchHHHHHHHHHc-ccCC----CCCCCCccccCC----C
Q 001848 667 RCEVLGANIVKSD--SRTFAVYAIAVTDSN--NNSWSIKRRFRHFEELHRRLKF-FQEY----NLHLPPKHFLST----G 733 (1005)
Q Consensus 667 ~v~I~~~~~~~~g--~k~ytvY~I~V~~~~--~~~w~V~RRYSeF~~Lh~~Lk~-~p~~----~p~LP~Kk~f~~----~ 733 (1005)
.+.|+++.+++++ +++|++|.|+|.+.. +..|.|+||||||.+||.+|++ ||.. .|+||+|+++ + +
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~-~~~~~~ 82 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPW-YDSRVN 82 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCccc-cccccc
Confidence 5789999998765 799999999999874 5799999999999999999998 9874 5899999998 5 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 734 ~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
++.+|+|+||.+||.||+.|+++|.+++++.|++||+.
T Consensus 83 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 83 LNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 99999999999999999999999999999999999973
No 12
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.82 E-value=5.4e-20 Score=177.62 Aligned_cols=103 Identities=28% Similarity=0.462 Sum_probs=94.8
Q ss_pred eEEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCCCCCCCCccccCCCCCHHHHHHHH
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
...+.|++++.. ++|++|.|+|+.+ +..|+|.||||||.+||++|++ ++...++||+|++| ++++++|+++||
T Consensus 3 ~~~v~I~~~~~~----~~~~~Y~I~V~~~-~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~P~Kk~~-~~~~~~~ie~Rr 76 (116)
T cd06875 3 ETKIRIPSAETV----EGYTVYIIEVKVG-SVEWTVKHRYSDFAELHDKLVAEHKVDKDLLPPKKLI-GNKSPSFVEKRR 76 (116)
T ss_pred CEEEEECCEEEE----CCEEEEEEEEEEC-CeEEEEEecHHHHHHHHHHHHHHcCcccCcCCCcccc-CCCCHHHHHHHH
Confidence 358899999765 4699999999987 7899999999999999999998 74456889999999 899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
.+||.||+.|++++.++.+++|.+||+..+
T Consensus 77 ~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~ 106 (116)
T cd06875 77 KELEIYLQTLLSFFQKTMPRELAHFLDFHK 106 (116)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHhCCCc
Confidence 999999999999999999999999999997
No 13
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.82 E-value=4.9e-20 Score=176.85 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=95.4
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccCC-CCCCCCccccCCCCCHHHHH
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQ 740 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~~-~p~LP~Kk~f~~~~d~~flE 740 (1005)
.+.|.+...++++.++|++|.|++.... ...|.|+||||||.+||++|++ ||+. .|+||+|+++ ++++++|+|
T Consensus 2 ~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~-~~~~~~fie 80 (112)
T cd06861 2 EITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSV-GRFDDNFVE 80 (112)
T ss_pred EEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccc-cCCCHHHHH
Confidence 5778888888888889999999999763 3689999999999999999997 9984 7999999998 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 741 kRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+||.+||.||+.|++||.+++++.|++||+.
T Consensus 81 ~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 81 QRRAALEKMLRKIANHPVLQKDPDFRLFLES 111 (112)
T ss_pred HHHHHHHHHHHHHHCCcccccCcHHHHhcCC
Confidence 9999999999999999999999999999975
No 14
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.82 E-value=5.5e-20 Score=179.28 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=97.8
Q ss_pred eeEEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC---------CCCCCCCccccCCC
Q 001848 664 FKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------YNLHLPPKHFLSTG 733 (1005)
Q Consensus 664 ~~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~---------~~p~LP~Kk~f~~~ 733 (1005)
++|+|.|.+.+.. .|.+.|++|.|+|...++..|.|+||||||.+||.+|++ ||. ..|+||+|++| ++
T Consensus 2 ~~i~~~I~~~~~~-~~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~-~~ 79 (123)
T cd06882 2 VAVSATIADIEEK-RGFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV-GR 79 (123)
T ss_pred CcEEEEEeeeeEE-eCCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec-Cc
Confidence 4689999998754 567899999999998767799999999999999999997 884 26889999998 66
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCC-CCCchhhhccccccccCc
Q 001848 734 LDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQTY 776 (1005)
Q Consensus 734 ~d~~flEkRr~~LE~YLq~Ll~~p~-l~~s~~l~~FL~~~~~~y 776 (1005)
.+ +|+++||.+||.||+.|+++|. +++|+.|+.||...+.+|
T Consensus 80 ~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~d~ 122 (123)
T cd06882 80 KA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTESDS 122 (123)
T ss_pred cH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCcccc
Confidence 65 9999999999999999999975 999999999999988665
No 15
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.82 E-value=6.4e-20 Score=174.40 Aligned_cols=102 Identities=25% Similarity=0.433 Sum_probs=93.5
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCC-CCCCCCccccCC--CCCHHHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLST--GLDVSVIQE 741 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~-~p~LP~Kk~f~~--~~d~~flEk 741 (1005)
+++.|+++... +++|++|.|+|... +..|.|.||||||.+||++|++ ||.. .|+||+|+++ + +.++++||+
T Consensus 1 ~~v~ip~~~~~---~~~~~~Y~I~v~~~-~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~-~~~~~~~~~ie~ 75 (108)
T cd06897 1 LEISIPTTSVS---PKPYTVYNIQVRLP-LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWF-LSTSSNPKLVEE 75 (108)
T ss_pred CeEEcCCeEEc---CCCeEEEEEEEEcC-CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEe-cccCCCHHHHHH
Confidence 47889998766 46799999999988 7899999999999999999998 8874 6899999998 5 899999999
Q ss_pred HHHHHHHHHHHHhcCC--CCCCchhhhcccccc
Q 001848 742 RCKLLDRYLKMLLQLP--TVSGSIEVWDFLSVD 772 (1005)
Q Consensus 742 Rr~~LE~YLq~Ll~~p--~l~~s~~l~~FL~~~ 772 (1005)
||.+||.||+.|+++| .+++|+.+++||+++
T Consensus 76 Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 76 RRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 9999999999999999 999999999999863
No 16
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.81 E-value=1.6e-19 Score=175.43 Aligned_cols=109 Identities=29% Similarity=0.551 Sum_probs=96.0
Q ss_pred cCceeEEEEEeceEEEeCCCCCeEEEEEEEEeCC--CCeEEEEeccchHHHHHHHHHcccCCCCCCCCccccCCCCCHHH
Q 001848 661 DSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN--NNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSV 738 (1005)
Q Consensus 661 ~~~~~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~--~~~w~V~RRYSeF~~Lh~~Lk~~p~~~p~LP~Kk~f~~~~d~~f 738 (1005)
|.+++|+|.|++.+. .++|++|.|+|+.+. +..|.|+||||||++||++|+.. +..++||+|+++ ++++++|
T Consensus 3 ~~~~~~~~~i~~~~~----~~~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~-~~~~plP~K~~~-g~~~~~~ 76 (120)
T cd06871 3 DDTVPLTCVIEASQN----IQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQIS-GISLPLPPKKLI-GNMDREF 76 (120)
T ss_pred CCCceeEEEEecCCC----ccCcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHc-CCCCCCCCcccc-CCCCHHH
Confidence 667899999999863 346999999998752 46999999999999999999963 234679999999 8999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhhhccccccccCcc
Q 001848 739 IQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYA 777 (1005)
Q Consensus 739 lEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~~~y~ 777 (1005)
+++||.+||.||+.|+++|.+++++.+++||+..+ |.
T Consensus 77 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~--~~ 113 (120)
T cd06871 77 IAERQQGLQNYLNVILMNPILASCLPVKKFLDPNN--YS 113 (120)
T ss_pred HHHHHHHHHHHHHHHHcChhhccCHHHHHhcCccc--CC
Confidence 99999999999999999999999999999998765 63
No 17
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.80 E-value=1.9e-19 Score=173.35 Aligned_cols=104 Identities=31% Similarity=0.456 Sum_probs=93.4
Q ss_pred EEEeceEEEeCCCCCeEEEEEEEEeCC---CCeEEEEeccchHHHHHHHHHc-ccC-C-CCCCCCccccCCCCCHHHHHH
Q 001848 668 CEVLGANIVKSDSRTFAVYAIAVTDSN---NNSWSIKRRFRHFEELHRRLKF-FQE-Y-NLHLPPKHFLSTGLDVSVIQE 741 (1005)
Q Consensus 668 v~I~~~~~~~~g~k~ytvY~I~V~~~~---~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~-~p~LP~Kk~f~~~~d~~flEk 741 (1005)
.+|+++..+..+.++|++|.|.+...+ ...|+|.||||||.+||..|++ |+. . .|+||+|+++ ++++++||++
T Consensus 3 ~~i~~~~~~~~~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~-~~~~~~~ie~ 81 (114)
T cd07300 3 FEIPSARIIEQTISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLT-GNFSEEIIAE 81 (114)
T ss_pred EEecCceeeccCCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCccc-CCCCHHHHHH
Confidence 678899888888888999999874332 4689999999999999999987 876 3 6889999998 8999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 742 RCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 742 Rr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
||.+||.||+.|+++|.++.++.|++||...
T Consensus 82 Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 82 RRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 9999999999999999999999999999876
No 18
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.80 E-value=2.8e-19 Score=171.15 Aligned_cols=101 Identities=23% Similarity=0.483 Sum_probs=91.9
Q ss_pred EEEEEeceEEEeCC-CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCCCCCCCCccccCCCCCHHHHHHHH
Q 001848 666 LRCEVLGANIVKSD-SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 666 i~v~I~~~~~~~~g-~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
|.+.|+++..+.++ ++.|++|.|+|..+ +..|.|+||||||++||++|++ |+ .|+||+|++ ++++++|+++||
T Consensus 1 ~~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~-~~~~~v~RRYseF~~Lh~~L~~~~~--~p~~P~K~~--~~~~~~~ie~Rr 75 (110)
T cd06880 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVN-GRRHTVEKRYSEFHALHKKLKKSIK--TPDFPPKRV--RNWNPKVLEQRR 75 (110)
T ss_pred CEEEeCcEEEeeCCCCCCeEEEEEEEEEC-CeEEEEEccHHHHHHHHHHHHHHCC--CCCCCCCCc--cCCCHHHHHHHH
Confidence 57899999887654 68999999999987 6799999999999999999998 76 789999997 478999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
.+||.||+.|+.+|. .+.+|.+||+...
T Consensus 76 ~~Le~yL~~ll~~~~--~s~~l~~FL~~~~ 103 (110)
T cd06880 76 QGLEAYLQGLLKINE--LPKQLLDFLGVRH 103 (110)
T ss_pred HHHHHHHHHHHcCcc--ccHHHHHHhCCCC
Confidence 999999999999998 5899999999986
No 19
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.80 E-value=1.6e-19 Score=173.15 Aligned_cols=100 Identities=28% Similarity=0.482 Sum_probs=89.2
Q ss_pred EEEeceEEEeCC-CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccC--------CCCCH
Q 001848 668 CEVLGANIVKSD-SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS--------TGLDV 736 (1005)
Q Consensus 668 v~I~~~~~~~~g-~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~--------~~~d~ 736 (1005)
+.|+++..+++| +++|++|.|++.. |+|.||||||++||++|++ ||+ ..|+||+|+.+. +++++
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~-----~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~ 76 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG-----SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDA 76 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee-----EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcH
Confidence 468888888775 6789999998753 9999999999999999998 998 479999998762 25899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 737 ~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
+|||+||.+||.||+.|+++|.+++|+.|.+||+.+
T Consensus 77 ~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 77 KIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 999999999999999999999999999999999863
No 20
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.80 E-value=2.2e-19 Score=172.38 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=95.1
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHH--
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVS-- 737 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~-- 737 (1005)
+.+.|.+.+++++|.++|++|.|.|.... +..|.|+|||+||.+||++|++ ||+ ..|+||+|+++ ++++.+
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~-~~~~~~~~ 79 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAV-GRFKVKFE 79 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCccc-CccCccHH
Confidence 46889999999999999999999998752 3689999999999999999998 887 47999999998 777655
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 738 flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
|+++||.+||.||+.|+++|.+++++.|..||+.
T Consensus 80 ~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 80 FIEKRRAALERFLRRIAAHPVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHHHHHHhcChhhccCcHHHhhcCC
Confidence 9999999999999999999999999999999975
No 21
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.80 E-value=2.3e-19 Score=170.69 Aligned_cols=100 Identities=27% Similarity=0.397 Sum_probs=91.6
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
|++.|+++..+.+++++|++|.|++.. .|.|.||||||.+||.+|++ |+. ..|+||+|+++ +++.+|+|+||
T Consensus 4 ~~i~Ip~~~~~~~~~~~yvvY~I~~~~----~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~--~~~~~~ie~Rr 77 (106)
T cd06886 4 VPISIPDYKHVEQNGEKFVVYNIYMAG----RQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPF--SLSEQQLDARR 77 (106)
T ss_pred ceEecCCcceEcCCCCcEEEEEEEEcC----CEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCHHHHHHHH
Confidence 789999998877778899999998862 69999999999999999998 887 46999999998 47899999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
.+||.||+.|+++|.+++|+.|.+||+.
T Consensus 78 ~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 78 RGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 9999999999999999999999999974
No 22
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.80 E-value=2.6e-19 Score=174.84 Aligned_cols=106 Identities=22% Similarity=0.388 Sum_probs=92.6
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-cc--C-CCCCCCCccccCC-----
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQ--E-YNLHLPPKHFLST----- 732 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p--~-~~p~LP~Kk~f~~----- 732 (1005)
|.+.|.+.+..++|.+.|++|.|++.+.- ...|.|+||||||.+||.+|++ |+ + ..||+|+|++++.
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 45778888888888889999999987531 4689999999999999999997 86 3 3799999998731
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 733 ----GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 733 ----~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++++|+|+||.+||.||++|++||.+++++.|+.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 358999999999999999999999999999999999974
No 23
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.80 E-value=3.3e-19 Score=171.44 Aligned_cols=103 Identities=25% Similarity=0.359 Sum_probs=91.6
Q ss_pred EEEeceEEEeC-CCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCC-HHHH
Q 001848 668 CEVLGANIVKS-DSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLD-VSVI 739 (1005)
Q Consensus 668 v~I~~~~~~~~-g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d-~~fl 739 (1005)
|.|.+..+..+ ++++|++|.|.+..+. ...|.|+||||||.+||.+|++ ||. ..|+||+|++| ++++ ++||
T Consensus 2 v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~-~~~~~~~fi 80 (113)
T cd06898 2 VEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLF-GRFNNEGFI 80 (113)
T ss_pred eEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccc-cCCCCHHHH
Confidence 56677776655 7789999999998753 2578999999999999999998 887 57999999999 7777 9999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 740 EkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
++||.+||.||+.|+++|.+.+++.|..||+.
T Consensus 81 e~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 81 EERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 99999999999999999999999999999974
No 24
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.79 E-value=3.8e-19 Score=171.72 Aligned_cols=107 Identities=25% Similarity=0.294 Sum_probs=95.5
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVI 739 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~fl 739 (1005)
+.|.|.+.....+|.+.|++|.|.+.++. ...|.|+||||||.+||.+|++ ||+ ..|+||+|.++ ++++++|+
T Consensus 2 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~-~~~~~~~i 80 (116)
T cd07295 2 LEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFT-NRFSDEVI 80 (116)
T ss_pred eEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccc-cCCCHHHH
Confidence 46778888888888899999999987542 3679999999999999999998 888 47999999987 88999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-Cchhhhccccccc
Q 001848 740 QERCKLLDRYLKMLLQLPTVS-GSIEVWDFLSVDS 773 (1005)
Q Consensus 740 EkRr~~LE~YLq~Ll~~p~l~-~s~~l~~FL~~~~ 773 (1005)
|+||.+||.||+.|++||.++ .++.+.+||+.++
T Consensus 81 e~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 81 EERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence 999999999999999999998 5899999999874
No 25
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.79 E-value=3.3e-19 Score=174.11 Aligned_cols=106 Identities=21% Similarity=0.404 Sum_probs=93.5
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC---CCCCCCCccccCC-----
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE---YNLHLPPKHFLST----- 732 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~---~~p~LP~Kk~f~~----- 732 (1005)
+.+.|.+.+...+|.++|++|.|.++... ...|.|.||||||.+||.+|++ |+. ..|++|+|++++.
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 46889999998898999999999998752 4699999999999999999997 763 3688999998721
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 733 ----GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 733 ----~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++.+|+|+||.+||.||+.|++||.+++++.|.+||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 GKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 358999999999999999999999999999999999975
No 26
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.79 E-value=3e-19 Score=175.48 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=91.6
Q ss_pred EEEEEeceEEEeCC-----CCCeEEEEEEEEeCC--------CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCcccc
Q 001848 666 LRCEVLGANIVKSD-----SRTFAVYAIAVTDSN--------NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFL 730 (1005)
Q Consensus 666 i~v~I~~~~~~~~g-----~k~ytvY~I~V~~~~--------~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f 730 (1005)
|++.|.+.+...+| +++|++|.|++.... ...|.|+||||||++||.+|.+ ||+ ..|+||+|+++
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 35677777765554 348999999999763 2478999999999999999998 998 47999999864
Q ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 731 -------STGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 731 -------~~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
.++++++|+|+||.+||.||+.|++||.+++++.|.+||+.
T Consensus 81 ~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~ 128 (129)
T cd06864 81 FMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTH 128 (129)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCC
Confidence 25889999999999999999999999999999999999975
No 27
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.79 E-value=5.2e-19 Score=172.44 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=96.2
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHcccC-CCCCCCCccccC--------C
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFLS--------T 732 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~~p~-~~p~LP~Kk~f~--------~ 732 (1005)
+.+.|.+.....+|.++|++|.|.++++. ...|.|+||||||.+||..|+++++ ..|++|+|+++. +
T Consensus 2 ~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd07293 2 LEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKALFRQLPFRGDDG 81 (123)
T ss_pred eEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCCCCchhhhcccccccC
Confidence 57788888888888899999999999763 3689999999999999999998666 579999999873 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 733 ~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
+++++|+|+||++||.||+.|++||.+++++.|..||+.+
T Consensus 82 ~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 82 IFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 7899999999999999999999999999999999999865
No 28
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.79 E-value=3.4e-19 Score=173.07 Aligned_cols=104 Identities=21% Similarity=0.358 Sum_probs=91.0
Q ss_pred EEEeceEEEeC------CCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCC--C
Q 001848 668 CEVLGANIVKS------DSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLST--G 733 (1005)
Q Consensus 668 v~I~~~~~~~~------g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~--~ 733 (1005)
|.|.+.+...+ ++++|++|.|++.... ...|+|+|||+||.+||.+|++ ||+ ..|++|+|.++++ +
T Consensus 2 i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~ 81 (120)
T cd06865 2 ITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVM 81 (120)
T ss_pred eEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCcccccccc
Confidence 56666666544 4589999999999763 4799999999999999999998 998 5799999999843 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 734 ~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
++++|||+||.+||.||+.|+.||.+++++.|..||+.
T Consensus 82 ~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 82 QSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 69999999999999999999999999999999999975
No 29
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.79 E-value=4.4e-19 Score=171.66 Aligned_cols=104 Identities=25% Similarity=0.433 Sum_probs=92.6
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
|++.|+.+....+|++.|++|.|+|+.+ +..|.|.||||||++||++|++ ||. ..|+||+|+++ ++++.+|+|+||
T Consensus 1 ~~v~IPs~~~~g~~~~~y~vY~I~v~~~-~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~-g~~~~~~ie~Rr 78 (118)
T cd07277 1 INVWIPSVFLRGKGSDAHHVYQVYIRIR-DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAI-GNKDAKFVEERR 78 (118)
T ss_pred CEEEcCcEEEecCCCCCEEEEEEEEEEC-CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCcc-CCCCHHHHHHHH
Confidence 5789999998888889999999999987 7899999999999999999998 887 46899999999 899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
.+||.||+.|+.+ .+...+++.+||+..
T Consensus 79 ~~Le~yL~~ll~~-~~~~~~~~~~~~~~~ 106 (118)
T cd07277 79 KRLQVYLRRVVNT-LIQTSPELTACPSKE 106 (118)
T ss_pred HHHHHHHHHHHHH-HHHhCchhhcCCCHH
Confidence 9999999999996 555566777777654
No 30
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.79 E-value=4.9e-19 Score=173.02 Aligned_cols=103 Identities=24% Similarity=0.396 Sum_probs=93.3
Q ss_pred EEEEeceEEEe--CCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHH
Q 001848 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQER 742 (1005)
Q Consensus 667 ~v~I~~~~~~~--~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkR 742 (1005)
+|.|.+.+... .|+++|++|.|.+.. ..|.|.||||||++||.+|.+ ||+ ..|+||+|+++ ++++.+||++|
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~---~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~-~~~~~~fie~R 77 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH---TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVT-GRFEEDFIEKR 77 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec---CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccc-cCCCHHHHHHH
Confidence 56777777654 567899999999875 489999999999999999998 998 47999999998 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 743 r~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
|.+||.||+.|++||.+++++.|.+||+..+
T Consensus 78 r~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 78 RERLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred HHHHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 9999999999999999999999999999864
No 31
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.79 E-value=4.2e-19 Score=173.31 Aligned_cols=102 Identities=20% Similarity=0.359 Sum_probs=92.7
Q ss_pred EEEEeceEEEe--CCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCC-CCCCCCccccCCCCCHHHHHHH
Q 001848 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQER 742 (1005)
Q Consensus 667 ~v~I~~~~~~~--~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~-~p~LP~Kk~f~~~~d~~flEkR 742 (1005)
-|+|.+.+... +|.++|++|.|.+... .|.|.||||||.+||..|.+ ||+. .|++|+|+.+ ++++++||++|
T Consensus 2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~~---~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~-g~f~~~FIe~R 77 (127)
T cd07286 2 QCTIDDPTKQTKFKGMKSYISYKLVPSHT---GLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQAT-GRFEEDFISKR 77 (127)
T ss_pred eEEeCCCcccCCCCCCcCEEEEEEEEecC---ceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcC-CCCCHHHHHHH
Confidence 36777777665 6788999999987544 69999999999999999998 9994 8999999998 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 743 r~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
|.+||.||+.|+.||.++.++.|..||+.+
T Consensus 78 r~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 78 RKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 999999999999999999999999999976
No 32
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.79 E-value=7.1e-19 Score=173.72 Aligned_cols=111 Identities=33% Similarity=0.533 Sum_probs=97.0
Q ss_pred cccccccCceeEEEEEeceEEEeC-CCCCeEEEEEEEEeCCC----CeEEEEeccchHHHHHHHHHc-ccCC-CCCCCCc
Q 001848 655 QNSLMVDSFFKLRCEVLGANIVKS-DSRTFAVYAIAVTDSNN----NSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPK 727 (1005)
Q Consensus 655 ~~~~~~~~~~~i~v~I~~~~~~~~-g~k~ytvY~I~V~~~~~----~~w~V~RRYSeF~~Lh~~Lk~-~p~~-~p~LP~K 727 (1005)
.+++++. .++.|+++....+ +++.|++|.|+|+..++ ..|.|.||||||.+||.+|++ ||.. .|+||+|
T Consensus 13 ~~~~~~~----~~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K 88 (133)
T cd06876 13 DNSLYGR----TRVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQK 88 (133)
T ss_pred cccccCc----ceEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCcc
Confidence 4556653 3788999887654 47899999999998642 489999999999999999998 9884 7899999
Q ss_pred cccCCCC--CHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccc
Q 001848 728 HFLSTGL--DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLS 770 (1005)
Q Consensus 728 k~f~~~~--d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~ 770 (1005)
+++ ++. +.+|+++||.+||.||+.|+++|.+++++.|.+||+
T Consensus 89 ~~~-~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 89 RKI-SLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred ccc-cCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 998 665 899999999999999999999999999999999995
No 33
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.79 E-value=6.8e-19 Score=171.68 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=95.7
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHcccC-CCCCCCCcccc--------CC
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFL--------ST 732 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~~p~-~~p~LP~Kk~f--------~~ 732 (1005)
|.+.|.+.+...+|.+.|++|.|++..+. ...|.|+||||||.+||.+|++.|+ ..|+||+|+++ .+
T Consensus 2 ~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd06894 2 LEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDDG 81 (123)
T ss_pred eEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHcCCCccCCCCCCceecccccccccC
Confidence 57788888888888999999999998652 3689999999999999999997666 57999999985 26
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 733 ~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
+++++|+|+||.+||.||+.|++||.+++++.|..||+..
T Consensus 82 ~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 82 IFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 7899999999999999999999999999999999999876
No 34
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.78 E-value=6.8e-19 Score=170.03 Aligned_cols=105 Identities=19% Similarity=0.330 Sum_probs=93.2
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccC---CCCCHH
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS---TGLDVS 737 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~---~~~d~~ 737 (1005)
.+.|.+.+...++.++|++|.|+++... ...|.|.|||+||.+||.+|.+ ||+ ..|+||+|+.+. ++++++
T Consensus 2 ~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~ 81 (116)
T cd06860 2 FITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSPE 81 (116)
T ss_pred EEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCHH
Confidence 4667777777777889999999988642 4699999999999999999998 998 479999999841 578999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 738 flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
|+++||.+||.||+.|++||.+++++.|..||+.
T Consensus 82 fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 82 FVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999999999999999975
No 35
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.78 E-value=6.4e-19 Score=171.10 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=90.8
Q ss_pred EEEEEeceEEE-eCCCCCeEEEEEEEEeCC----C--------CeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCcccc
Q 001848 666 LRCEVLGANIV-KSDSRTFAVYAIAVTDSN----N--------NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFL 730 (1005)
Q Consensus 666 i~v~I~~~~~~-~~g~k~ytvY~I~V~~~~----~--------~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f 730 (1005)
|.+.|+.++.. +++.++|++|.|.|.... . ..|.|.||||||++||++|++ ||+ ..|+||+|+++
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 46778888754 346788999999987642 1 279999999999999999998 998 47999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 731 STGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 731 ~~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
+ +++|+++||.+||.||+.|+++|.+++|+.|.+||.++
T Consensus 82 -~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 -V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred -C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 4 89999999999999999999999999999999999863
No 36
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.78 E-value=9.2e-19 Score=169.41 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=92.4
Q ss_pred EEEEEeceEEEe-CCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCcccc----CCCC
Q 001848 666 LRCEVLGANIVK-SDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFL----STGL 734 (1005)
Q Consensus 666 i~v~I~~~~~~~-~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f----~~~~ 734 (1005)
|.|.|.+.+... +++++|++|.|+|.... ...|.|.|||+||++||+.|.+ ||+ ..|+||+|+.+ ++++
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~ 80 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRF 80 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCC
Confidence 356677777655 56889999999998753 2689999999999999999998 998 47999999975 2568
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 735 d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++|+++||++||.||+.|+++|.+++++.|..||+.
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 9999999999999999999999999999999999964
No 37
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.78 E-value=1.1e-18 Score=168.44 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=93.2
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccC---CCCCHH
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS---TGLDVS 737 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~---~~~d~~ 737 (1005)
-|.|.+.....+|..+|++|.|++.+.. ...|.|.||||||.+||+.|.+ ||+ ..||||+|+++. ++++++
T Consensus 2 ~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~ 81 (116)
T cd07283 2 FVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEE 81 (116)
T ss_pred EEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCHH
Confidence 4677788777778889999999999763 3689999999999999999997 998 579999998652 457899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 738 flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
|+|+||.+||.||+.|++||.+++++.|..||..
T Consensus 82 fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 82 FVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999999999999999975
No 38
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.77 E-value=1.7e-18 Score=164.40 Aligned_cols=88 Identities=24% Similarity=0.327 Sum_probs=81.9
Q ss_pred CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 001848 680 SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLP 757 (1005)
Q Consensus 680 ~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~~p 757 (1005)
...|++|.|++.. ..|.|.||||||++||.+|++ ||+ ..|+||+|+++ ++++++|+++||.+||.||+.|+++|
T Consensus 15 ~~~y~~Y~i~~~~---~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~-~~~~~~~ie~Rr~~Le~fL~~l~~~p 90 (105)
T cd06866 15 FLKHVEYEVSSKR---FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIG-GSADREFLEARRRGLSRFLNLVARHP 90 (105)
T ss_pred ccCCEEEEEEEec---CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccc-cCCCHHHHHHHHHHHHHHHHHHhcCh
Confidence 3489999999875 479999999999999999997 998 57899999999 79999999999999999999999999
Q ss_pred CCCCchhhhccccc
Q 001848 758 TVSGSIEVWDFLSV 771 (1005)
Q Consensus 758 ~l~~s~~l~~FL~~ 771 (1005)
.+++++.|.+||+.
T Consensus 91 ~l~~s~~l~~FL~~ 104 (105)
T cd06866 91 VLSEDELVRTFLTE 104 (105)
T ss_pred hhccChHHHhhcCC
Confidence 99999999999975
No 39
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.76 E-value=1.6e-18 Score=168.81 Aligned_cols=103 Identities=22% Similarity=0.367 Sum_probs=92.0
Q ss_pred EEEEeceEEEe--CCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-C-CCCCCCccccCCCCCHHHHHH
Q 001848 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-Y-NLHLPPKHFLSTGLDVSVIQE 741 (1005)
Q Consensus 667 ~v~I~~~~~~~--~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~-~p~LP~Kk~f~~~~d~~flEk 741 (1005)
.|.|.+.+... +|.++|++|.|..+.. .+.|.||||||.+||+.|.+ |+. . .||+|+|+++ ++++++||++
T Consensus 2 ~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~~---~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~-g~f~~~FIe~ 77 (126)
T cd07285 2 DCVVADPRKGSKMYGLKSYIEYQLTPTNT---NRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT-GRFEEEFIKM 77 (126)
T ss_pred EEEEcCcccccCCCCCcCeEEEEEEeccC---CeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCcccc-CCCCHHHHHH
Confidence 46677776654 5678999999988754 68999999999999999997 865 3 7999999998 8999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 742 RCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 742 Rr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
||.+||.||+.|++||.++.++.|..||+..+
T Consensus 78 Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~ 109 (126)
T cd07285 78 RMERLQAWMTRMCRHPVISESEVFQQFLNFRD 109 (126)
T ss_pred HHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCC
Confidence 99999999999999999999999999999865
No 40
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.76 E-value=2.4e-18 Score=166.08 Aligned_cols=106 Identities=22% Similarity=0.326 Sum_probs=93.8
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccC---CCCCH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS---TGLDV 736 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~---~~~d~ 736 (1005)
|.+.|.+.+...+|.+.|+.|.|.+.+.. ...|.|.||||||.+||..|.+ ||+ ..||+|+|.++. +++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 80 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNE 80 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCH
Confidence 35677788777788889999999999753 4689999999999999999998 998 479999998762 34689
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 737 ~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+|+++||++||.||++|+.||.++.+++|+.||+.
T Consensus 81 ~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 81 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 99999999999999999999999999999999974
No 41
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.76 E-value=2.8e-18 Score=165.97 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=88.4
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCC------CCeEEEEeccchHHHHHHHHHc-ccC-----CCCCCCCccccCCCC
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN------NNSWSIKRRFRHFEELHRRLKF-FQE-----YNLHLPPKHFLSTGL 734 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~------~~~w~V~RRYSeF~~Lh~~Lk~-~p~-----~~p~LP~Kk~f~~~~ 734 (1005)
++.|.+++..+ ++|++|.|.+.... ...|.|+||||||.+||++|++ |+. ..|+||+|++| +++
T Consensus 4 ~~~V~d~~~~~---~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~-g~~ 79 (117)
T cd06881 4 SFTVTDTRRHK---KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYF-GRF 79 (117)
T ss_pred EEEecCcceec---CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCccc-CCC
Confidence 56777777653 57999999998521 2589999999999999999997 754 35899999999 899
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 735 d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++||++||.+||.||+.|+++|.++.++.|++||+.
T Consensus 80 ~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 80 DAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 9999999999999999999999999999999999974
No 42
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.76 E-value=5.7e-18 Score=166.84 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=96.8
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHcccC-CCCCCCCccccC--------C
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFLS--------T 732 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~~p~-~~p~LP~Kk~f~--------~ 732 (1005)
|.+.|.+.+.+.+|.++|++|.|.+.+.. ...|.|.||||||.+||++|++.++ ..|+||+|+++. +
T Consensus 4 ~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP~K~~~~~~~~~~~~~ 83 (132)
T cd07294 4 LEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEG 83 (132)
T ss_pred EEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCCCCceecccccccccc
Confidence 68889999999999999999999988653 3689999999999999999997666 578999999731 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 733 ~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
+++++|+|+||.+||.||+.|++||.+++++.|..||+.+.
T Consensus 84 ~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~ 124 (132)
T cd07294 84 IFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDET 124 (132)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCC
Confidence 78999999999999999999999999999999999999886
No 43
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.76 E-value=4e-18 Score=162.97 Aligned_cols=103 Identities=27% Similarity=0.400 Sum_probs=89.4
Q ss_pred EEEeceEEEeCCCCCeEEEEEEEEeCC-CCeEEEEeccchHHHHHHHHHc-ccCC-CCCCCCccccCCCCCHHHHHHHHH
Q 001848 668 CEVLGANIVKSDSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQERCK 744 (1005)
Q Consensus 668 v~I~~~~~~~~g~k~ytvY~I~V~~~~-~~~w~V~RRYSeF~~Lh~~Lk~-~p~~-~p~LP~Kk~f~~~~d~~flEkRr~ 744 (1005)
|+|.|++...+ ..+|++|.|+|+..+ +..|+|.||||||++||++|++ ||.. .|+||+|++++.+.+.+++++|+.
T Consensus 2 ~~i~~~~~~~~-~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~e~R~~ 80 (109)
T cd06883 2 VSVFGFQKRYS-PEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVAERRKI 80 (109)
T ss_pred cEEEEEEEEec-CCceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHHHHHHH
Confidence 67888865544 456999999999975 5789999999999999999998 9884 789999999844456789999999
Q ss_pred HHHHHHHHHhcCC-CCCCchhhhccccc
Q 001848 745 LLDRYLKMLLQLP-TVSGSIEVWDFLSV 771 (1005)
Q Consensus 745 ~LE~YLq~Ll~~p-~l~~s~~l~~FL~~ 771 (1005)
+||.||+.|++.| .+++|+.|++||..
T Consensus 81 ~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 81 ELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 9999999999984 89999999999874
No 44
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.75 E-value=2.6e-18 Score=162.89 Aligned_cols=99 Identities=23% Similarity=0.376 Sum_probs=88.4
Q ss_pred EEEEeceEEEeC-CCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHH
Q 001848 667 RCEVLGANIVKS-DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 667 ~v~I~~~~~~~~-g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
++.|++++...+ ++++|++|.|+|. ..|.+.||||||.+||.+|.+ ||. ..|+||+|+++ +++.+|||+||
T Consensus 1 ~v~I~~~~~~~~~~~~~y~~Y~I~v~----~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~--~~~~~~ie~Rr 74 (104)
T cd06885 1 HFSIPDTQELSDEGGSTYVAYNIHIN----GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLL--PLTPAQLEERR 74 (104)
T ss_pred CCccCCcceeccCCCCcEEEEEEEEC----CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccc--cCCHHHHHHHH
Confidence 367888876654 7899999999985 258899999999999999998 887 57999999998 47889999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
.+||.||+.|+++|.++.++.|.+||..
T Consensus 75 ~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 75 LQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred HHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 9999999999999999999999999864
No 45
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.75 E-value=3.6e-18 Score=168.41 Aligned_cols=106 Identities=25% Similarity=0.466 Sum_probs=89.6
Q ss_pred eEEEEEeceEEEeCCCCCeEEEEEEEEeCC---------------CCeEEEEeccchHHHHHHHHHcccC----CCCCCC
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN---------------NNSWSIKRRFRHFEELHRRLKFFQE----YNLHLP 725 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~---------------~~~w~V~RRYSeF~~Lh~~Lk~~p~----~~p~LP 725 (1005)
.|.-.|.+.+.+.+|.+.|++|.|.+.+.. ...|.|.||||||.+||++|++.+. ..+++|
T Consensus 3 ~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P 82 (132)
T cd06893 3 RIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGP 82 (132)
T ss_pred cccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCC
Confidence 456677778888888899999999986431 2689999999999999999997322 134677
Q ss_pred Cccc----cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 726 PKHF----LSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 726 ~Kk~----f~~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+|++ + ++++++|||+||.+||.||+.|+++|.++.+++|++||+.
T Consensus 83 ~k~~p~lp~-g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 83 PKRLFDLPF-GNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CccCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 7765 4 8999999999999999999999999999999999999975
No 46
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.74 E-value=8.3e-18 Score=164.72 Aligned_cols=98 Identities=20% Similarity=0.447 Sum_probs=88.0
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
|++.|+++....+|.++|++|.|+|+.. +..|+|+||||||.+||++|++ ||. ..|+||+|++| ++.+++|+|+||
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~~-~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~-g~~~~~~ie~Rr 78 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITVL-DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLF-GNKSERVAKERR 78 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEEC-CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceec-CCCCHHHHHHHH
Confidence 4789999987777788999999999987 6789999999999999999997 887 46889999999 899999999999
Q ss_pred HHHHHHHHHHhcC-CCCCCchhh
Q 001848 744 KLLDRYLKMLLQL-PTVSGSIEV 765 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~-p~l~~s~~l 765 (1005)
.+||.||+.|++. +.+..|+.+
T Consensus 79 ~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 79 RQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHHhchhccCCccc
Confidence 9999999999995 777877754
No 47
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.74 E-value=8.3e-18 Score=162.76 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=85.7
Q ss_pred EEEeceEEEeCCCCCeEEEEEEEEeCC--C----CeEEEEeccchHHHHHHHHHc-ccC------CCCCCCCccccCCCC
Q 001848 668 CEVLGANIVKSDSRTFAVYAIAVTDSN--N----NSWSIKRRFRHFEELHRRLKF-FQE------YNLHLPPKHFLSTGL 734 (1005)
Q Consensus 668 v~I~~~~~~~~g~k~ytvY~I~V~~~~--~----~~w~V~RRYSeF~~Lh~~Lk~-~p~------~~p~LP~Kk~f~~~~ 734 (1005)
..|.+.+..+ ++|++|.|++.... . ..|+|+||||||.+||+.|+. |+. ..|++|+|++| +++
T Consensus 5 ~~V~dp~~~~---~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~-g~~ 80 (118)
T cd07287 5 YTVTDPRRHP---KGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF-GRF 80 (118)
T ss_pred EEecCCeEcC---CCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceee-cCC
Confidence 4556666443 35999999887542 1 579999999999999999997 763 25889999999 899
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 735 d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++|||+||.+||.||+.+.++|.++++++|++||..
T Consensus 81 d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 81 DESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 9999999999999999999999999999999999975
No 48
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.72 E-value=1.7e-17 Score=160.72 Aligned_cols=101 Identities=15% Similarity=0.275 Sum_probs=86.3
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCC------CCeEEEEeccchHHHHHHHHHc-ccC------CCCCCCCccccCCC
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN------NNSWSIKRRFRHFEELHRRLKF-FQE------YNLHLPPKHFLSTG 733 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~------~~~w~V~RRYSeF~~Lh~~Lk~-~p~------~~p~LP~Kk~f~~~ 733 (1005)
...|.+.+.+++ +|++|.|.+.... ...|+|+||||||.+||++|.. +++ ..|++|+|+++ ++
T Consensus 4 ~~~V~dp~~~~~---gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~-g~ 79 (118)
T cd07288 4 FYSVTDPRTHPK---GYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVF-GR 79 (118)
T ss_pred EEEecCCcCcCC---CcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceee-cc
Confidence 345666655444 4999999986431 3589999999999999999995 544 26899999998 89
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 734 ~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
++++|||+||.+||.||+.|++||.++++++|++||+.
T Consensus 80 f~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 80 FEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 99999999999999999999999999999999999975
No 49
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.70 E-value=6.9e-17 Score=154.81 Aligned_cols=104 Identities=25% Similarity=0.329 Sum_probs=91.3
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCCC-CeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHH
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~~-~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr 743 (1005)
+|.|.|++... +.++|++|.|+|+..++ ..|.|+|||+||.+||++|++ ||. ..|+||+|.+++++.+.++.|+|+
T Consensus 3 ~v~v~~~~kr~-~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~ 81 (111)
T cd06884 3 RVTVVGFQKRY-DPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRK 81 (111)
T ss_pred EEEEEEEEEEe-cCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHH
Confidence 67888887643 36789999999997654 789999999999999999997 997 467899998885567889999999
Q ss_pred HHHHHHHHHHhcC-CCCCCchhhhccccc
Q 001848 744 KLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1005)
Q Consensus 744 ~~LE~YLq~Ll~~-p~l~~s~~l~~FL~~ 771 (1005)
.+||.||+.|++. |.+++|+.+..||..
T Consensus 82 ~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 82 QDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred HHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 9999999999996 789999999999864
No 50
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.70 E-value=4.5e-17 Score=160.33 Aligned_cols=92 Identities=27% Similarity=0.386 Sum_probs=83.1
Q ss_pred CCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHH
Q 001848 680 SRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKML 753 (1005)
Q Consensus 680 ~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~L 753 (1005)
+..-++|.|+|.... ...|.|.||||||.+||++|++ ||+ ..|++|+|+++ ++++++|+|+||.+||.||+.|
T Consensus 41 ~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l-~~~~~~fiEeRR~gLE~fLq~L 119 (138)
T cd06879 41 NAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLL-RMKNRALLEERRHSLEEWMGKL 119 (138)
T ss_pred CCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccc-cCCCHHHHHHHHHHHHHHHHHH
Confidence 345578999999873 2589999999999999999997 987 57889999998 8999999999999999999999
Q ss_pred hcCCCCCCchhhhcccccc
Q 001848 754 LQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 754 l~~p~l~~s~~l~~FL~~~ 772 (1005)
+++|.++.++.+.+||+++
T Consensus 120 l~~p~l~~s~~v~~FLele 138 (138)
T cd06879 120 LSDIDLSRSVPVASFLELE 138 (138)
T ss_pred HcCccccCCHHHHHHhCCC
Confidence 9999999999999999863
No 51
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.70 E-value=5.7e-17 Score=161.24 Aligned_cols=106 Identities=26% Similarity=0.490 Sum_probs=89.0
Q ss_pred eeEEEEEeceEEEeCC--CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHcc-cCCC-------------------
Q 001848 664 FKLRCEVLGANIVKSD--SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFF-QEYN------------------- 721 (1005)
Q Consensus 664 ~~i~v~I~~~~~~~~g--~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~~-p~~~------------------- 721 (1005)
++++|+|++++....+ ...|++|.|+|+.+ +..|+|+|||+||.+||++|+.+ +...
T Consensus 2 ~~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g-~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~ 80 (140)
T cd06895 2 EPIKARITDVERSGTTRHLLNPNLYTIELQHG-QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSR 80 (140)
T ss_pred CCcEEEEeEEeccCCCCCCCceEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhcccccc
Confidence 4689999999876553 57799999999988 78999999999999999999984 3333
Q ss_pred -----------CCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 722 -----------LHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 722 -----------p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
|.||.|... + .+++++++|+++||.||+.|+.+|.+++++++++||+.+
T Consensus 81 ~~~~~~~~~~lP~lP~~~~~-~-~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeVS 140 (140)
T cd06895 81 KPEREKKNRRLPSLPALPDI-L-VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEVS 140 (140)
T ss_pred ccccccccccCCCCCCcccc-c-cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhccC
Confidence 444544443 2 379999999999999999999999999999999999864
No 52
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.69 E-value=1.2e-16 Score=155.06 Aligned_cols=86 Identities=28% Similarity=0.368 Sum_probs=78.6
Q ss_pred CCCCeEEEEEEEEeCCC--CeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHh
Q 001848 679 DSRTFAVYAIAVTDSNN--NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLL 754 (1005)
Q Consensus 679 g~k~ytvY~I~V~~~~~--~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll 754 (1005)
+++.|++|.|+|+..++ ..|.|.||||||++||++|++ ||+ ..|+||+|+. .++|+||.+||.||+.|+
T Consensus 29 ~~~~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~-------~~~E~Rr~~Le~yL~~Ll 101 (119)
T cd06869 29 RSKHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK-------LPREKLRLSLRQYLRSLL 101 (119)
T ss_pred CCCceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch-------hHHHHHHHHHHHHHHHHh
Confidence 46789999999999865 699999999999999999997 998 5789999986 478999999999999999
Q ss_pred cCCCCCCchhhhccccc
Q 001848 755 QLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 755 ~~p~l~~s~~l~~FL~~ 771 (1005)
++|.+++|++|.+||..
T Consensus 102 ~~p~l~~s~~~~~FL~~ 118 (119)
T cd06869 102 KDPEVAHSSILQEFLTS 118 (119)
T ss_pred cChhhhcChHHHHhhCC
Confidence 99999999999999974
No 53
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.68 E-value=2.4e-16 Score=146.70 Aligned_cols=102 Identities=37% Similarity=0.640 Sum_probs=93.4
Q ss_pred EEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHHHH
Q 001848 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKL 745 (1005)
Q Consensus 668 v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr~~ 745 (1005)
+.|.++....++++.+++|.|.++..++..|.|+|||+||.+||+.|++ ++. ..|+||+|.++ +..+.+++++|+.+
T Consensus 2 i~I~~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~-~~~~~~~~~~R~~~ 80 (106)
T cd06093 2 VSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLF-GNLDPEFIEERRKQ 80 (106)
T ss_pred EEeCCceEEcCCCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCccc-ccCCHHHHHHHHHH
Confidence 6788888776677889999999999855899999999999999999998 886 57999999998 67899999999999
Q ss_pred HHHHHHHHhcCCCCCCchhhhcccc
Q 001848 746 LDRYLKMLLQLPTVSGSIEVWDFLS 770 (1005)
Q Consensus 746 LE~YLq~Ll~~p~l~~s~~l~~FL~ 770 (1005)
|+.||+.|+++|.+..++.+.+||+
T Consensus 81 L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 81 LEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred HHHHHHHHhcCcccccChHHHHHhC
Confidence 9999999999999999999999986
No 54
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.68 E-value=2.6e-16 Score=152.44 Aligned_cols=104 Identities=30% Similarity=0.362 Sum_probs=89.8
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC----------CCCCCCCccccCCCCC
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTGLD 735 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~----------~~p~LP~Kk~f~~~~d 735 (1005)
.|.|.+++.... ..+|.+|.|+|+..++..|.|+|||+||.+||++|++ ||. ..|.||+|++|+++..
T Consensus 3 ~~~v~~~ekr~~-~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~ 81 (119)
T cd06888 3 DVKVIDVEKRRA-PSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHI 81 (119)
T ss_pred eEEEEEEEEEec-CCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchh
Confidence 678888887664 4456699999999888999999999999999999998 986 2578999999933445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCCchhhhccccc
Q 001848 736 VSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSV 771 (1005)
Q Consensus 736 ~~flEkRr~~LE~YLq~Ll~~p-~l~~s~~l~~FL~~ 771 (1005)
.+++++|+..|+.||+.|+..| .++.|+.++.|+..
T Consensus 82 ~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 82 RDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 7799999999999999999985 68899999999875
No 55
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.67 E-value=2.2e-16 Score=154.85 Aligned_cols=108 Identities=29% Similarity=0.596 Sum_probs=88.6
Q ss_pred eeEEEEEeceEEEeCC----CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHcccCC-CCCCCCccc---------
Q 001848 664 FKLRCEVLGANIVKSD----SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEY-NLHLPPKHF--------- 729 (1005)
Q Consensus 664 ~~i~v~I~~~~~~~~g----~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~~p~~-~p~LP~Kk~--------- 729 (1005)
++|+|+|.+++....+ ...|++|.|+|+.+ ...|+|+|||+||.+||++|..|... .++||+|++
T Consensus 2 ~~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g-~~~w~V~rRy~~F~~Lh~~L~~~~~~~~~plP~k~~~~~r~~~~~ 80 (135)
T cd07296 2 CPIKARVLEVERFTSTSDVKKPSLNVYTIELTHG-EFTWQVKRKFKHFQELHRELLRYKAFIRIPIPTRSHTVRRQTIKR 80 (135)
T ss_pred CceEEEEEEEEEeeccccccccceEEEEEEEEeC-CEEEEEEeehHHHHHHHHHHHhcCCCCCCCCCcccchhhcccccc
Confidence 5799999999864433 45799999999988 78999999999999999999986553 567889877
Q ss_pred --------cCCCCCHHHHH----HHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 730 --------LSTGLDVSVIQ----ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 730 --------f~~~~d~~flE----kRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
|....+....| +||++||+||+.|+++|.+++++++++||+.+
T Consensus 81 ~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeVs 135 (135)
T cd07296 81 GEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDVS 135 (135)
T ss_pred ccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheecC
Confidence 42122223344 89999999999999999999999999999864
No 56
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.65 E-value=3.8e-16 Score=146.42 Aligned_cols=92 Identities=32% Similarity=0.561 Sum_probs=78.6
Q ss_pred CCCCeEEEEEEEEeCC-CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccC--CCCCHHHHHHHHHHHHHHHHHH
Q 001848 679 DSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS--TGLDVSVIQERCKLLDRYLKML 753 (1005)
Q Consensus 679 g~k~ytvY~I~V~~~~-~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~--~~~d~~flEkRr~~LE~YLq~L 753 (1005)
|++.+++|.|+|.... ...|.|.||||||.+||++|++ ||. ..|+||+|++++ ++.+++++++|+.+||.||+.|
T Consensus 8 ~~~~~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l 87 (105)
T smart00312 8 GDGKHYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSL 87 (105)
T ss_pred CCCceEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3445556666666553 4799999999999999999998 887 478999999983 2689999999999999999999
Q ss_pred hcCCCCCC-chhhhcccc
Q 001848 754 LQLPTVSG-SIEVWDFLS 770 (1005)
Q Consensus 754 l~~p~l~~-s~~l~~FL~ 770 (1005)
+++|.+++ |++|.+||+
T Consensus 88 ~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 88 LNHPELINESEVVLSFLE 105 (105)
T ss_pred HcCHhhhccChHHHHhcC
Confidence 99999999 999999985
No 57
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.64 E-value=1.1e-15 Score=145.56 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=86.6
Q ss_pred EEEeceEEEeCCCCCeEEEEEEEEeCCCC-eEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHHH
Q 001848 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNN-SWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCK 744 (1005)
Q Consensus 668 v~I~~~~~~~~g~k~ytvY~I~V~~~~~~-~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr~ 744 (1005)
|+|++++......+ |.+|.|+|++.++. ...|+|||+||.+||++|++ ||. ..|.||+|.+++++...+.+|+|+.
T Consensus 2 ~~V~~f~Kr~~p~k-~yvY~i~V~~~~~~~~~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~vae~R~~ 80 (109)
T cd07289 2 VSVFTYHKRYNPDK-HYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVAAKRKV 80 (109)
T ss_pred cEEeeEEEEEcCCC-eEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHHHHHHH
Confidence 67888875544344 45999999998653 25599999999999999998 997 5899999999843445799999999
Q ss_pred HHHHHHHHHhcC-CCCCCchhhhccccc
Q 001848 745 LLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1005)
Q Consensus 745 ~LE~YLq~Ll~~-p~l~~s~~l~~FL~~ 771 (1005)
+||.||+.|++. |.+++|+.+..||..
T Consensus 81 ~L~~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 81 ELNSYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHcCChhhhcChHHHHhccc
Confidence 999999999997 579999999999864
No 58
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.64 E-value=1.4e-15 Score=147.15 Aligned_cols=103 Identities=28% Similarity=0.381 Sum_probs=89.6
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC----------CCCCCCCccccCCCCC
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTGLD 735 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~----------~~p~LP~Kk~f~~~~d 735 (1005)
.|.|.|++.... .+.|++|.|+|...++..|+|+|||+||.+||.+|++ ||. ..|.||+|.+| ++.
T Consensus 3 ~~~~~~~~kr~~-~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~-~~~- 79 (118)
T cd06887 3 HIALLGFEKRFV-PSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF-DGQ- 79 (118)
T ss_pred eEEEEEEEEeec-CCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc-Ccc-
Confidence 678888876543 5679999999999778899999999999999999998 985 26889999998 543
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCCchhhhccccccc
Q 001848 736 VSVIQERCKLLDRYLKMLLQL-PTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 736 ~~flEkRr~~LE~YLq~Ll~~-p~l~~s~~l~~FL~~~~ 773 (1005)
++.|+|+.+||.||+.|+.. +.+++|+.++.||...+
T Consensus 80 -~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~~ 117 (118)
T cd06887 80 -RAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVRP 117 (118)
T ss_pred -hHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcCC
Confidence 99999999999999999875 58999999999998764
No 59
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.62 E-value=1.3e-15 Score=143.29 Aligned_cols=106 Identities=31% Similarity=0.555 Sum_probs=89.2
Q ss_pred eEEEEEeceEEEeCCCCCeEEEEEEEEeCC-CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCC--CCCHHHH
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLST--GLDVSVI 739 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~-~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~--~~d~~fl 739 (1005)
-+.|.|++.+.. +++..++|.++|.... ...|.|+|||+||.+||.+|++ ++. ..|+||+|.++.. +.+.+++
T Consensus 3 ~~~v~v~~~~~~--~~~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~~~~ 80 (113)
T PF00787_consen 3 IIQVSVVDPETS--GNKKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDPEFI 80 (113)
T ss_dssp EEEEEEEEEEEE--SSSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSHHHH
T ss_pred EEEEEEcCCEEE--cCCCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccHHHH
Confidence 367888888766 3445566666666664 4899999999999999999998 886 4789999999832 4899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 740 EkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
++|+..|+.||+.|+++|.+..++.+..||+.+
T Consensus 81 ~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 81 EERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 999999999999999999999999999999853
No 60
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.60 E-value=6.4e-15 Score=140.33 Aligned_cols=101 Identities=21% Similarity=0.338 Sum_probs=83.5
Q ss_pred EEeceEEEeCCCCCeEEEEEEEEeCCC-CeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCC-HHHHHHHHH
Q 001848 669 EVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLD-VSVIQERCK 744 (1005)
Q Consensus 669 ~I~~~~~~~~g~k~ytvY~I~V~~~~~-~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d-~~flEkRr~ 744 (1005)
-+.|.+..-...| |.+|.|+|++.++ ..|.|+|||+||.+||++|++ ||. ..|.||+|.++ +..+ ++.+|+|+.
T Consensus 3 ~~~~~~kr~~p~k-~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~-g~s~~~~vae~R~~ 80 (109)
T cd07290 3 FLCRHESTFNPSK-GYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVI-GRSRGEAVAERRKE 80 (109)
T ss_pred eEeeeeEEecCCC-cEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCccc-CccccHHHHHHHHH
Confidence 3455554444445 4459999999854 459999999999999999998 998 48999999998 5544 799999999
Q ss_pred HHHHHHHHHhcC-CCCCCchhhhccccc
Q 001848 745 LLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1005)
Q Consensus 745 ~LE~YLq~Ll~~-p~l~~s~~l~~FL~~ 771 (1005)
+|+.||+.|+.. |.+++|+.++.||..
T Consensus 81 ~L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 81 ELNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHcCChheecCHHHHHhccc
Confidence 999999998885 789999999999864
No 61
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.58 E-value=8.5e-15 Score=140.78 Aligned_cols=99 Identities=24% Similarity=0.242 Sum_probs=87.1
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCC---------CCCCCCccccCCCCCH
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY---------NLHLPPKHFLSTGLDV 736 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~---------~p~LP~Kk~f~~~~d~ 736 (1005)
+|.|+++...+ .+.+|.|+|+..++..|.|.|||+||.+||.+|.+ ||.. .|.||+|... ..+.
T Consensus 2 ~~~V~~~~~~~----~~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~--~~~~ 75 (112)
T cd06890 2 SASVESVLLED----NRYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD--VVND 75 (112)
T ss_pred eEEEEEEEEEC----CEEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC--cchh
Confidence 68888887763 37899999999879999999999999999999998 9841 4777777654 4688
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCCchhhhccccc
Q 001848 737 SVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSV 771 (1005)
Q Consensus 737 ~flEkRr~~LE~YLq~Ll~~p-~l~~s~~l~~FL~~ 771 (1005)
+++++|+.+|+.||+.|+.+| .+.+|+.+++||..
T Consensus 76 ~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 76 SISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 999999999999999999999 99999999999864
No 62
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.56 E-value=1.6e-14 Score=143.16 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=92.2
Q ss_pred ceeEEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeE-EEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCC
Q 001848 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSW-SIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLD 735 (1005)
Q Consensus 663 ~~~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w-~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d 735 (1005)
...|.++|.+.+.+++ +|+.|.+.++++- ...+ .|.||||||.+||++|.. +++ ..|++|+|.++.+..+
T Consensus 27 ~~~l~i~Vtd~ek~G~---~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~ 103 (140)
T cd06891 27 KYFLRVRVTGIERNKS---KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNN 103 (140)
T ss_pred CceEEEEEeCceecCC---CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCC
Confidence 4568999999987654 6889999887542 3456 799999999999999997 888 5799999997547788
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 736 VSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 736 ~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
.+|+++||.+||.||++++.||.+..+++|+.||+.
T Consensus 104 ~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 104 EEDARKLKANLQRWFNRVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhcc
Confidence 999999999999999999999999999999999974
No 63
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.9e-15 Score=140.67 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=91.8
Q ss_pred eEEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCC-CHH
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGL-DVS 737 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~-d~~ 737 (1005)
-+.+.|.+.....++...||-|.|.+.++. ...-.|.||||||++||..|+. -.. ..|+||+|.++ .++ ..+
T Consensus 17 fLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~-~~~~fre 95 (144)
T KOG2527|consen 17 FLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALF-RQLPFRE 95 (144)
T ss_pred eEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHH-hcCchHH
Confidence 367778887777777889999999998874 3567899999999999999997 333 47999999998 443 349
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 738 flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
|||+||++||.||+.++.||.+.++..|..||....
T Consensus 96 ~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~ 131 (144)
T KOG2527|consen 96 FIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSEL 131 (144)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhh
Confidence 999999999999999999999999999999987663
No 64
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=99.48 E-value=4.5e-14 Score=135.75 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=57.0
Q ss_pred chh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHhhcCCCccccc
Q 001848 941 WIR-RKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIP 999 (1005)
Q Consensus 941 WlR-Rq~~~v~kqilq~~~Gdti~~~i~~~v~~l~~e~~va~yI~~~~~~lWP~g~~~~~ 999 (1005)
||| |++++++||+|+++||++||+||++.|.|+++|++|+.||+.++++|||||++..+
T Consensus 1 Wlr~r~i~~~l~~~l~~~~g~tI~r~i~~~v~~l~se~~v~~~i~~l~~~lwP~g~~~~~ 60 (113)
T PF08628_consen 1 WLRRRQILAVLQQILRQTFGSTIERKIRDQVEWLTSEEQVARYIQLLRESLWPNGKLAEP 60 (113)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 999 99999999999999999999999999999999999999999999999999988754
No 65
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.45 E-value=2.8e-13 Score=130.57 Aligned_cols=107 Identities=24% Similarity=0.395 Sum_probs=86.7
Q ss_pred eeEEEEEeceEEEeCCCCCe--EEEEEEEEeCCCCeEEEEeccchHHHHHHHHHcccC--CCCCCCCc-----cccC---
Q 001848 664 FKLRCEVLGANIVKSDSRTF--AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQE--YNLHLPPK-----HFLS--- 731 (1005)
Q Consensus 664 ~~i~v~I~~~~~~~~g~k~y--tvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~~p~--~~p~LP~K-----k~f~--- 731 (1005)
++|+|+|.+++..+.|++.+ ++|+|+++.+ ...|+|.|||.+|++||+.|..|.. ..+|+|.. ..+.
T Consensus 2 ~pi~~~V~~~er~~s~s~~~~~~lYtIeltHG-~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~ 80 (130)
T cd07297 2 VPVTAKVENTERYTTGSKVHVCTLYTVRLTHG-EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLT 80 (130)
T ss_pred CceEEEEEEEEEeecccccccceeEEEEEecC-ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhcccccccc
Confidence 57999999999998888877 8999999999 6999999999999999999987544 22344421 1100
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcccccc
Q 001848 732 ----------TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 732 ----------~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~ 772 (1005)
+.. .+-+..|+++||+||+.||.+|..++.++..+||+++
T Consensus 81 ~~mP~LP~~~~~~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeVS 130 (130)
T cd07297 81 EEMPSLPGTDREA-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAVS 130 (130)
T ss_pred CcCCCCCCCCchh-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeecC
Confidence 111 3557789999999999999999999999999999864
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.43 E-value=1.4e-13 Score=148.83 Aligned_cols=119 Identities=26% Similarity=0.392 Sum_probs=95.4
Q ss_pred CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCCCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC-C
Q 001848 680 SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL-P 757 (1005)
Q Consensus 680 ~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~~-p 757 (1005)
..+|++|.|+|+.+ ...|+|.|||+||+.||.+|.. ..-.+--||||+++ |+.++.|+|+|+++||.|||.|+.. |
T Consensus 24 ~~~~t~y~i~v~~g-~~ew~v~~ry~df~~lheklv~e~~i~k~llppkk~i-g~~~~s~~e~r~~~leiylq~ll~~f~ 101 (490)
T KOG1259|consen 24 SGGVTYYDIKVRVG-KVEWLVERRYRDFANLHEKLVGEISISKKLLPPKKLV-GNKQPSFLEQRREQLEIYLQELLIYFR 101 (490)
T ss_pred cCceEEEEEEEEec-ceeeeehhhhhHHHHHHHHhhhhheeccccCCchhhc-CCCChhHHHHHHHHHHHHHHHHHHHcc
Confidence 45799999999998 7899999999999999999984 32223349999998 9999999999999999999999884 4
Q ss_pred CCCCchhhhccccccccCcccCCCchhhhhhhccccCCCCcc--ccccccc
Q 001848 758 TVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSVDLEDKPSER--STKFTNS 806 (1005)
Q Consensus 758 ~l~~s~~l~~FL~~~~~~y~~~~~~s~~~tl~~~~~~~~~d~--~~~~~n~ 806 (1005)
... -..+-+||.-.. | ++..+++.||..++++|+.. ..++++.
T Consensus 102 ~~~-pr~la~fl~f~~--y---~i~~~~~~la~~~~e~g~~ll~~~~~~~~ 146 (490)
T KOG1259|consen 102 TEL-PRALAEFLDFNK--Y---DIIYLLQDLAKLFNESGDALLSSKKEYNL 146 (490)
T ss_pred ccC-HHHHHHHhccch--H---HHHHHHHHHHHHHHhhhHHHhccCceecc
Confidence 332 246667776553 6 56788999999999888776 4445543
No 67
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.39 E-value=1.3e-12 Score=128.04 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=82.5
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc---ccC-CCCCCCCccccC------
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS------ 731 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~---~p~-~~p~LP~Kk~f~------ 731 (1005)
+.+.|.++-..++ .+.|.|..++.- .....|.||||||.+||.+|.+ |++ ..||+|+|..|.
T Consensus 3 l~v~isD~~~~~d----~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~ 78 (141)
T cd07292 3 LQVDISDALSERD----KVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKL 78 (141)
T ss_pred eEEEcccccccCC----ceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHH
Confidence 5677777765544 399999987652 4679999999999999999983 788 579999997762
Q ss_pred -------CCCCHHHHH---------------HHHHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 732 -------TGLDVSVIQ---------------ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 732 -------~~~d~~flE---------------kRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++..++.+ +|+.+||.|||+|.+||.++++..|+.||+-
T Consensus 79 ~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 79 QKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 334445555 6778899999999999999999999999974
No 68
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.38 E-value=1.2e-12 Score=128.34 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=81.2
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc---ccC-CCCCCCCccccC------
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS------ 731 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~---~p~-~~p~LP~Kk~f~------ 731 (1005)
+.+.|.++-..++ ++.|.|..++.- +....|.||||||.+||++|.+ |++ ..||+|+|..+.
T Consensus 3 l~i~vsD~~~~~d----~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~ 78 (141)
T cd07291 3 LQIDIPDALSERD----KVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKM 78 (141)
T ss_pred cEEEeccccccCC----CEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhh
Confidence 4567777755444 699999987642 4679999999999999999984 788 579999998872
Q ss_pred -------CCCC-HHHHHHH--------------HHHHHHHHHHHhcCCCCCCchhhhccccc
Q 001848 732 -------TGLD-VSVIQER--------------CKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 732 -------~~~d-~~flEkR--------------r~~LE~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++. .+|++.| +.+||.|||+|..||.+++++.|+.||+.
T Consensus 79 ~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 79 QKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEY 140 (141)
T ss_pred hhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccC
Confidence 2233 4566644 35699999999999999999999999985
No 69
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.37 E-value=3.4e-12 Score=123.68 Aligned_cols=102 Identities=28% Similarity=0.345 Sum_probs=85.6
Q ss_pred eEEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC----------CCCCCCCccccCCC
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTG 733 (1005)
Q Consensus 665 ~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~----------~~p~LP~Kk~f~~~ 733 (1005)
..+|...|.+. ...+.+|.|.|+..++..|.|+|||+||.+||.+|++ ||. ..|.||+|.++ ++
T Consensus 5 ~~~v~~~g~~k----~~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~-~~ 79 (121)
T cd06889 5 PVDVQGVGVMQ----KRRHKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSL-GS 79 (121)
T ss_pred eEEEEEEeeec----ccceeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCccc-CC
Confidence 45666666653 3346699999999989999999999999999999998 984 16899999998 55
Q ss_pred C--CHHHHHHHHHHHHHHHHHHhcC-CCCCCchhhhccccc
Q 001848 734 L--DVSVIQERCKLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1005)
Q Consensus 734 ~--d~~flEkRr~~LE~YLq~Ll~~-p~l~~s~~l~~FL~~ 771 (1005)
. ..+.-++|+..|+.|++.|+.. |.+++|+.++.||..
T Consensus 80 ~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 80 LKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 4 3446789999999999999997 579999999999875
No 70
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.35 E-value=2.6e-12 Score=127.21 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=84.0
Q ss_pred EEEEeceEEEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc---ccC-CCCCCCCccccC-------
Q 001848 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS------- 731 (1005)
Q Consensus 667 ~v~I~~~~~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~---~p~-~~p~LP~Kk~f~------- 731 (1005)
.+.|.++--. +.++.|.|..++.- .....|.|||+||.+||.+|.+ |++ ..||+|+|..+.
T Consensus 4 ~~~i~da~~~----~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~ 79 (141)
T cd06892 4 QVDISDALSE----RDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQ 79 (141)
T ss_pred eeeccccccc----CCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceee
Confidence 4555555333 34899999987652 4789999999999999999994 788 579999997541
Q ss_pred ------CCCCHHHHHHHHHHH---------------HHHHHHHhcCCCCCCchhhhccccc
Q 001848 732 ------TGLDVSVIQERCKLL---------------DRYLKMLLQLPTVSGSIEVWDFLSV 771 (1005)
Q Consensus 732 ------~~~d~~flEkRr~~L---------------E~YLq~Ll~~p~l~~s~~l~~FL~~ 771 (1005)
+++..+|+++|+..| |.||+++..||.+.++..|..||+.
T Consensus 80 klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 80 KLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred ecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 358899999999999 5899999999999999999999975
No 71
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=5.7e-11 Score=141.42 Aligned_cols=108 Identities=26% Similarity=0.395 Sum_probs=94.0
Q ss_pred EEEEEeceE-EEeCCCCCeEEEEEEEEeCC----CCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCC----CC
Q 001848 666 LRCEVLGAN-IVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLST----GL 734 (1005)
Q Consensus 666 i~v~I~~~~-~~~~g~k~ytvY~I~V~~~~----~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~----~~ 734 (1005)
+.+.++..+ -..++.++|..|.|.+.... .....|+|||+||..||..|.. ||+ ..||+|+|..... .+
T Consensus 110 ~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~~ 189 (503)
T KOG2273|consen 110 LSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDSF 189 (503)
T ss_pred eeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCCC
Confidence 555666555 34556789999999998863 4678999999999999999998 999 5799999998744 57
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 735 d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
+.+|+++||++|+.||+++..||.++++..|+.||+.+.
T Consensus 190 s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 190 SDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS 228 (503)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence 999999999999999999999999999999999999995
No 72
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.11 E-value=2.2e-10 Score=106.16 Aligned_cols=84 Identities=30% Similarity=0.350 Sum_probs=73.3
Q ss_pred EEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC-CCCC
Q 001848 684 AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL-PTVS 760 (1005)
Q Consensus 684 tvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~~-p~l~ 760 (1005)
.+|.|+|...++..-.|+|+|.||.+||++|++ ||. ..|.||.+-.+ +-.+. -++|.+.||.||+.|++. |.++
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~-~~~~~--~~~R~~~L~~Yl~~Ll~~~~eVa 89 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHL-PFTDS--DHKRVRDLNHYLEQLLSGSREVA 89 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCcccc-CcccH--HHHHHHHHHHHHHHHHccCHHHh
Confidence 479999999878899999999999999999998 999 57999999654 33333 478999999999999996 6899
Q ss_pred Cchhhhcccc
Q 001848 761 GSIEVWDFLS 770 (1005)
Q Consensus 761 ~s~~l~~FL~ 770 (1005)
+|+.+..|+.
T Consensus 90 ~sd~v~sFF~ 99 (101)
T cd06896 90 NSDCVLSFFL 99 (101)
T ss_pred cchHHHHHhh
Confidence 9999999974
No 73
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.5e-09 Score=122.50 Aligned_cols=112 Identities=22% Similarity=0.367 Sum_probs=94.3
Q ss_pred eEEEEEeceEEE--eCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccCC-CCCCCCccccCCCCCHHHHH
Q 001848 665 KLRCEVLGANIV--KSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQ 740 (1005)
Q Consensus 665 ~i~v~I~~~~~~--~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~~-~p~LP~Kk~f~~~~d~~flE 740 (1005)
..+|.|.+.... -.|-|+|+.|.+.-+.. ..| |.|||..|.+||.+|.. |+.+ .|+||.|..- +++..+||+
T Consensus 185 ~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~t--~~~-v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~-gr~Ee~fi~ 260 (490)
T KOG2528|consen 185 PFRCVVDDPKKESKFKGLKSYIAYQLTPTHT--NIS-VSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVT-GRFEEDFIE 260 (490)
T ss_pred CeeEEecCcccccccccchheeEeeeccccc--Ccc-hhhcccccHHHHHHHHhhcccccCCCCCccccc-cchhHHHHH
Confidence 578888876543 24678999999976655 234 99999999999999996 9884 7999999996 999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhhhcccccc--ccCcccCC
Q 001848 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD--SQTYAFSN 780 (1005)
Q Consensus 741 kRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~--~~~y~~~~ 780 (1005)
+||++|+.|++.++.||.+.+|+.+..||.-. .+.|..|+
T Consensus 261 ~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GK 302 (490)
T KOG2528|consen 261 KRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGK 302 (490)
T ss_pred HHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcccccccccc
Confidence 99999999999999999999999999999874 44564433
No 74
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=2.3e-08 Score=114.51 Aligned_cols=221 Identities=20% Similarity=0.236 Sum_probs=140.7
Q ss_pred EeCCCCCeEEEEEEEEeCCCC----eEEEEeccchHHHHHHHHHc-c-cCCC---CCCC---CccccCCCCCHHHHHHHH
Q 001848 676 VKSDSRTFAVYAIAVTDSNNN----SWSIKRRFRHFEELHRRLKF-F-QEYN---LHLP---PKHFLSTGLDVSVIQERC 743 (1005)
Q Consensus 676 ~~~g~k~ytvY~I~V~~~~~~----~w~V~RRYSeF~~Lh~~Lk~-~-p~~~---p~LP---~Kk~f~~~~d~~flEkRr 743 (1005)
..+..++|++|.+.|...+.. .|+|+|||+||+.||.+|++ | |... +.+| .++.+.++++..++.+|+
T Consensus 128 ~~~~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 207 (362)
T KOG2101|consen 128 SREKSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERS 207 (362)
T ss_pred ccccccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhh
Confidence 345577899999999987433 59999999999999999998 8 5643 3333 233444899999999999
Q ss_pred HHHHHHH--HHHhcCCCCCCchhhhccccccccCcccCCCchhhhhhhccccCCCCcccccccccccccccccccccccc
Q 001848 744 KLLDRYL--KMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSYRSEHL 821 (1005)
Q Consensus 744 ~~LE~YL--q~Ll~~p~l~~s~~l~~FL~~~~~~y~~~~~~s~~~tl~~~~~~~~~d~~~~~~n~v~~l~~~~~~~~~~l 821 (1005)
..++.|| +-...++...++..+. +.....+.+. ............+.
T Consensus 208 ~~~~~fl~~~f~~~~~~~~~~~~~~-~~~~~~~~~~--------------------~~~~e~~~~~~~~~---------- 256 (362)
T KOG2101|consen 208 EALEEFLSLQFKDSKPSNVNCKKVM-LLLLEFPDLL--------------------PSLEELWTEFERLS---------- 256 (362)
T ss_pred hhHHHHHHhhhhhccccccchHHhh-ccccccCccC--------------------cchhhhhhhhhhhh----------
Confidence 9999999 5555556555554444 1111110000 00000000000000
Q ss_pred CCccccccccccccccccccccccccccCCCCCCcchhcccccccccCCCCccccCCCcccccCCCCCCCCCCCCchhhh
Q 001848 822 GSESKESAGQAKHNFVAEGQKFNVKEMSRSPVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRKSDGLEETS 901 (1005)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1005)
.... . .... . + .. .+.
T Consensus 257 -------------------~~~~---------~-~~~~-~-----------------~--------------~~---~~~ 272 (362)
T KOG2101|consen 257 -------------------EFSR---------K-LKVL-R-----------------D--------------NH---EIL 272 (362)
T ss_pred -------------------hhhh---------h-hhhh-c-----------------c--------------ch---hhh
Confidence 0000 0 0000 0 0 00 000
Q ss_pred hhhccCCCCCCCCCccCCCCchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHH
Q 001848 902 ESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVAS 981 (1005)
Q Consensus 902 ~~~~d~~~~~~iP~e~~~p~~~~pil~LvdeVF~L~~~~WlRRq~~~v~kqilq~~~Gdti~~~i~~~v~~l~~e~~va~ 981 (1005)
.. ..+..+.-+.|+.+..+++...+....+..-.|..-.-.+..+|+.+..|.+.+++++.+.+++.........
T Consensus 273 ~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (362)
T KOG2101|consen 273 AK-----LVDPLKLLLSEEQVPLDLLRFRLHLWLLGLFSPLLQSRTAELKQITQLGALNKLDDSLPDELRSLIRAYTSRK 347 (362)
T ss_pred hh-----cCCchhHhHhHhhhhHHHhhhhHhhccccCcCccccCchHHHHHHHhccchhhhHHhhhHHHHhhhhhhHHHH
Confidence 00 0111222223334555666667777666667888888899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcc
Q 001848 982 GIKRLEQVIILLLTN 996 (1005)
Q Consensus 982 yI~~~~~~lWP~g~~ 996 (1005)
+|.++-+++||.|.+
T Consensus 348 ~i~~~~~~l~~~~~~ 362 (362)
T KOG2101|consen 348 GIEAIFEILQPSGLN 362 (362)
T ss_pred HHHHHHHHhccccCC
Confidence 999999999999863
No 75
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=113.07 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=80.0
Q ss_pred ceeEEEEEeceEEEe-CCCCCeEEEEEEEEeCC----CCeE---EEEeccchHHHHHHHHHc-ccC-CCCCCCCccccC-
Q 001848 663 FFKLRCEVLGANIVK-SDSRTFAVYAIAVTDSN----NNSW---SIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS- 731 (1005)
Q Consensus 663 ~~~i~v~I~~~~~~~-~g~k~ytvY~I~V~~~~----~~~w---~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~- 731 (1005)
...+.+..+...... +....|+.|.|...... .... +|.||||||..||..|.. ||. ..|+||+|++.+
T Consensus 130 ~~~~~~~~p~s~~~~~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~ 209 (524)
T COG5391 130 FISSTVSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSE 209 (524)
T ss_pred HhhhccccchhcccccccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhcc
Confidence 334455555554332 33567999998877653 3344 999999999999999997 998 579999999974
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 001848 732 ---TGLDVSVIQERCKLLDRYLKMLLQLPTVSGS 762 (1005)
Q Consensus 732 ---~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s 762 (1005)
++++++|+++|+..|+.|++.+..||.+.++
T Consensus 210 ~~~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~ 243 (524)
T COG5391 210 YYGDRFSDEFIEERRQSLQNFLRRVSTHPLLSNY 243 (524)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 5899999999999999999999999998863
No 76
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.6e-07 Score=102.08 Aligned_cols=89 Identities=26% Similarity=0.403 Sum_probs=79.6
Q ss_pred CCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 001848 679 DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL 756 (1005)
Q Consensus 679 g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~~ 756 (1005)
+...|++|.|++.. .+...+||++|..||..|++ |.+ ..|+||+|+.| .+++.-+++||.+||+||+.+.++
T Consensus 13 ~~~~ytaynih~nG----~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f--~L~~~~~~~rr~~leqylqa~~q~ 86 (407)
T KOG3784|consen 13 SLERYTAYNIHING----RQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF--KLTPQQLDSRRRGLEQYLQAVCQD 86 (407)
T ss_pred Ccccccceeeeecc----eeEEEEehHHHHhHHHHHHHHhhcccCCCCCccccc--CCChhhhHHHHHHHHHHHHHHhcC
Confidence 56689999999853 47888999999999999997 555 47999999998 799999999999999999999999
Q ss_pred CCCCCchhhhccccccc
Q 001848 757 PTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 757 p~l~~s~~l~~FL~~~~ 773 (1005)
|.+..+..+..||..-+
T Consensus 87 ~~l~~s~~~~~fL~~~q 103 (407)
T KOG3784|consen 87 PVLARSELVQKFLMRAQ 103 (407)
T ss_pred ccccchhhhhHHHHhcc
Confidence 99999999999988765
No 77
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.04 E-value=1.3e-05 Score=99.24 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=86.4
Q ss_pred EEEEEeceEEEeCCCCCeEEEEEEEEeCCC-CeEEEEeccchHHHHHHHHHc-ccC-CCCCCCCccccCCCCCHHHHHHH
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQER 742 (1005)
Q Consensus 666 i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~-~~w~V~RRYSeF~~Lh~~Lk~-~p~-~~p~LP~Kk~f~~~~d~~flEkR 742 (1005)
..|.|..++..-. ..++..|.|+|.+.+. ..-.++|-|.||.+||++|+. ||. ..|.||..-..+...-.+..++|
T Consensus 1376 ~~v~v~~f~K~~~-pnK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~grsnikaVA~kR 1454 (1639)
T KOG0905|consen 1376 SEVTVLKFEKHYS-PNKIYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLGRSNIKAVAEKR 1454 (1639)
T ss_pred EEEEEEEeeeecc-CCceEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeecccchhHHHHHH
Confidence 5677777764333 3456799999999853 678899999999999999997 998 57889988776333446789999
Q ss_pred HHHHHHHHHHHhcC-CCCCCchhhhcccccc
Q 001848 743 CKLLDRYLKMLLQL-PTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 743 r~~LE~YLq~Ll~~-p~l~~s~~l~~FL~~~ 772 (1005)
...|+.||..|++- +++++|+.++.|+..-
T Consensus 1455 ~~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1455 IIELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred HHHHHHHHHHHhcCCchhhccceeeeeechh
Confidence 99999999999996 6899999999997655
No 78
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.86 E-value=1.1e-05 Score=89.46 Aligned_cols=108 Identities=23% Similarity=0.336 Sum_probs=90.1
Q ss_pred ceeEEEEEeceEEEeCCCCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc-ccC-C---------CCCCCCccccC
Q 001848 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-Y---------NLHLPPKHFLS 731 (1005)
Q Consensus 663 ~~~i~v~I~~~~~~~~g~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~-~p~-~---------~p~LP~Kk~f~ 731 (1005)
.+.+.+.|.+++. +-+..++.+|.|+|...++....|+|||.||+.+|.+|++ |+. . .|+||.+.+|
T Consensus 19 di~~~~kvi~~ek-e~~f~~hFvyVievkw~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~f- 96 (386)
T KOG4773|consen 19 DIAIPAKVIDAEK-ERSFTSHFVYVIEVKWYGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYF- 96 (386)
T ss_pred cccchHHHHhHHH-hcccchheEEEEEehhhccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEe-
Confidence 3456777777762 2234457899999999878899999999999999999998 764 1 4799999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCC-CCCchhhhccccccc
Q 001848 732 TGLDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDS 773 (1005)
Q Consensus 732 ~~~d~~flEkRr~~LE~YLq~Ll~~p~-l~~s~~l~~FL~~~~ 773 (1005)
.+..+-.|+|...|+.|+.-|++.|. +..++.|+.|+-+..
T Consensus 97 -dfkqe~Ae~r~~~ln~y~e~LlslPi~~l~~p~l~~fffvsp 138 (386)
T KOG4773|consen 97 -DFKQEIAEERIPALNAYCEWLLSLPIGRLGGPGLRPFFFVSP 138 (386)
T ss_pred -chhhhhhhhhhHHHHHHHHHHHhcchhhcCCCCceeeeeecc
Confidence 46788999999999999999999997 567899999988886
No 79
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.42 E-value=0.00053 Score=65.44 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=64.3
Q ss_pred eEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc--ccC---CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 001848 683 FAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLP 757 (1005)
Q Consensus 683 ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~--~p~---~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~~p 757 (1005)
=++|.|+|... +..|.|.|+|-||.-|.+.|.. |.- ..++||++... .-.++++ ...|-+||.++..+.
T Consensus 27 e~~~~v~v~Cq-grsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~~~~l--~~~~~~v---~~~l~~YL~RlS~Ia 100 (115)
T cd07298 27 ELVYLVQIACQ-GRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPRSDSL--KDSPESV---TQMLMAYLSRLSAIA 100 (115)
T ss_pred CeEEEEEEEeC-CCceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCCcccc--cccHHHH---HHHHHHHHHHHHHHh
Confidence 37999999998 7899999999999999999987 543 25789987654 3445666 568999999998873
Q ss_pred -CCCCchhhhcccc
Q 001848 758 -TVSGSIEVWDFLS 770 (1005)
Q Consensus 758 -~l~~s~~l~~FL~ 770 (1005)
..-+|-.+..||+
T Consensus 101 ~~~~nCGPvLtWle 114 (115)
T cd07298 101 GNKINCGPALTWME 114 (115)
T ss_pred hCCccchhcceeee
Confidence 4566667777765
No 80
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.94 E-value=0.0035 Score=59.73 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=63.8
Q ss_pred CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc--ccC---CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHh
Q 001848 680 SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLL 754 (1005)
Q Consensus 680 ~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~--~p~---~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll 754 (1005)
+.+.++|.|+|+.+ ++.|.|.|.|-+|..|.++|.. |.- ...+||+--.. .-.++-+ ...|..||.++.
T Consensus 23 ~~k~~~~~v~V~cq-g~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~--~~~~~~~---~~~l~~YL~RlS 96 (114)
T cd07278 23 SGKELVYLVQVQCQ-GKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE--KREQQNL---HQVLSDYLKRLS 96 (114)
T ss_pred CCCceEEEEEEEeC-CcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc--cchHHHH---HHHHHHHHHHHH
Confidence 34578999999998 7999999999999999999987 543 24677774332 2222333 458999999999
Q ss_pred cCC-CCCCchhhhccccc
Q 001848 755 QLP-TVSGSIEVWDFLSV 771 (1005)
Q Consensus 755 ~~p-~l~~s~~l~~FL~~ 771 (1005)
.+. ..-+|-.+..||++
T Consensus 97 ~Ia~~~inCGPvLtWlei 114 (114)
T cd07278 97 SIAGNLLNCGPVLNWLEL 114 (114)
T ss_pred HHhcCcccchhcceeeeC
Confidence 874 56677777777753
No 81
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.91 E-value=0.0036 Score=59.50 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=62.0
Q ss_pred CCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc--ccC---CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 001848 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQ 755 (1005)
Q Consensus 681 k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~--~p~---~~p~LP~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~ 755 (1005)
.+.++|.|+|... ++.|.|.|.|-||..|.++|.. |.- ...+||+---. + ... +.=...|..||.+|..
T Consensus 23 ~k~~~flv~V~cq-grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l-~-~~~---~~~~~~l~~YL~RlS~ 96 (113)
T cd07299 23 EKDLVFLVQVTCQ-GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEI-G-DRL---QILTPLLSEYLNRLTG 96 (113)
T ss_pred CCceEEEEEEEec-CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccc-c-chH---HHHHHHHHHHHHHHHH
Confidence 3578999999998 7899999999999999999987 543 24677765322 1 112 2334689999999988
Q ss_pred CC-CCCCchhhhcccc
Q 001848 756 LP-TVSGSIEVWDFLS 770 (1005)
Q Consensus 756 ~p-~l~~s~~l~~FL~ 770 (1005)
+. ..-+|-.+..|++
T Consensus 97 Ia~~~inCGPVLtWme 112 (113)
T cd07299 97 IVDSNLNCGPVLTWME 112 (113)
T ss_pred HhcCCccccccceeee
Confidence 73 4666667777765
No 82
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=0.079 Score=61.16 Aligned_cols=41 Identities=44% Similarity=0.784 Sum_probs=39.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHhHhHHhhhc-cCChhHHHHHHH
Q 001848 241 TFRPQDLQCSFFRYIVRELLACAVMRPVLN-LANPRFINERIE 282 (1005)
Q Consensus 241 LLP~~d~~s~~~r~LLREILA~~VL~Pli~-LSDPD~INq~Ii 282 (1005)
++|+.+..|.++++ +||+++|++++|+++ .|+|+.+|+.++
T Consensus 1 ~~~~~~~~~~~~~~-~re~~~~~~~~p~~~~~s~~~~~~~~~~ 42 (362)
T KOG2101|consen 1 ILPPEDLQCPLVRT-VREVVATCVILPLLNYASDPDIINQLIV 42 (362)
T ss_pred CCCcccccchHHhh-hhhHHHHHHHHHHHhhcCChhhhhHHhc
Confidence 36889999999999 999999999999999 899999999998
No 83
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=88.54 E-value=0.82 Score=51.96 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=58.7
Q ss_pred CeEEEEeccchHHHHHHHHHc---ccC-CCCCCCCccccC-------------CCCCHHHHHHHHHHH------------
Q 001848 696 NSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS-------------TGLDVSVIQERCKLL------------ 746 (1005)
Q Consensus 696 ~~w~V~RRYSeF~~Lh~~Lk~---~p~-~~p~LP~Kk~f~-------------~~~d~~flEkRr~~L------------ 746 (1005)
....|.|---+|++||..+.. |.+ +.||-|++.-|. +++..+-.-+-+..|
T Consensus 55 ~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK~elEaeyLA~fKKTv 134 (399)
T KOG1660|consen 55 PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKMKQELEAEYLARFKKTV 134 (399)
T ss_pred CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHHHHHhhhHHHHHHHHhh
Confidence 567788888999999999985 666 467788776652 344443333334444
Q ss_pred ---HHHHHHHhcCCCCCCchhhhccccccc
Q 001848 747 ---DRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 747 ---E~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
|.||++|..||.++....+.-||+.++
T Consensus 135 amhEvfl~RlaahPvlr~d~nf~vflEy~q 164 (399)
T KOG1660|consen 135 AMHEVFLRRLAAHPVLRLDQNFSVFLEYDQ 164 (399)
T ss_pred ccHHHHHHHHhcCCeeecccchhhhhhhcc
Confidence 569999999999999999999999884
No 84
>PLN02866 phospholipase D
Probab=84.31 E-value=1.3 Score=57.02 Aligned_cols=90 Identities=23% Similarity=0.321 Sum_probs=64.0
Q ss_pred eEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc--cc---------------C-----CCC-----------CCC----
Q 001848 683 FAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQ---------------E-----YNL-----------HLP---- 725 (1005)
Q Consensus 683 ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~--~p---------------~-----~~p-----------~LP---- 725 (1005)
--.|+|+++.. ...|.++|.-++-.-||-.|++ |- + ..+ ..|
T Consensus 32 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1068)
T PLN02866 32 LLSYTIELQYK-QFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVPLHHD 110 (1068)
T ss_pred EEEEEEEEEEe-eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccccccccccccccch
Confidence 46799999998 7899999998887777766653 20 0 000 122
Q ss_pred ---------Ccccc---C--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 726 ---------PKHFL---S--TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 726 ---------~Kk~f---~--~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
..-.+ . -.-.+.+..+++.+||+||+.+|.++.+.+++++.+||+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~ 172 (1068)
T PLN02866 111 ESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSK 172 (1068)
T ss_pred hhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeece
Confidence 11111 0 012445667778889999999999999999999999999997
No 85
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=53.52 E-value=13 Score=47.44 Aligned_cols=102 Identities=20% Similarity=0.323 Sum_probs=72.0
Q ss_pred eeEEEEEeceEEEeCC--CCCeEEEEEEEEeCCCCeEEEEeccchHHHHHHHHHc------ccC--C---------CCCC
Q 001848 664 FKLRCEVLGANIVKSD--SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF------FQE--Y---------NLHL 724 (1005)
Q Consensus 664 ~~i~v~I~~~~~~~~g--~k~ytvY~I~V~~~~~~~w~V~RRYSeF~~Lh~~Lk~------~p~--~---------~p~L 724 (1005)
..+.+.|.+.+.-..+ ..+-..|++....+ ...|+|++-|..|..+|..|.. ++. + .|..
T Consensus 45 ~~v~~~~~~~~~~~~~~~~~~~~~y~v~L~hG-~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 123 (887)
T KOG1329|consen 45 VPVFAAVVGVERPTSHPFVPSSGSYTVELLHG-TLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSG 123 (887)
T ss_pred CcccccccceecccccccccCCcceeeeeecC-cEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCC
Confidence 3456666666543332 23447899999887 7789999999999999999952 221 0 1222
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccccc
Q 001848 725 PPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 725 P~Kk~f~~~~d~~flEkRr~~LE~YLq~Ll~~p~l~~s~~l~~FL~~~~ 773 (1005)
|..... ..-+|+..+|.||.-++..+.+.+...+.+||+.+.
T Consensus 124 ~~~~~~-------~~~~~~~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~ 165 (887)
T KOG1329|consen 124 PRSSLN-------SSMEKRKTLENYLTVVLHKARYRRTHVIYEFLENSR 165 (887)
T ss_pred ccCCcc-------cchhhhhhccchheeeechhhhhchhhhhcccccch
Confidence 222221 114556669999999999999999999999999886
No 86
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=37.29 E-value=79 Score=36.12 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=53.5
Q ss_pred CccCCCCchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHhcchhHHHHH-H
Q 001848 915 TEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMG----------DAFDDWLMEKIQLLRRGSVVASG-I 983 (1005)
Q Consensus 915 ~e~~~p~~~~pil~LvdeVF~L~~~~WlRRq~~~v~kqilq~~~G----------dti~~~i~~~v~~l~~e~~va~y-I 983 (1005)
-=|+||.++.=|-.|.++ |+||+-- -+++-++-.++| ++|-|.+......|+.-.++.+| |
T Consensus 194 IfWtPPDVssfiasl~~d-~~~qGPe-------dla~d~vP~~lGGiGm~~GfT~ekigr~l~sa~~~Lra~~~lG~ygi 265 (358)
T PF08405_consen 194 IFWTPPDVSSFIASLLGD-FQLQGPE-------DLAKDLVPVLLGGIGMALGFTSEKIGRMLSSAASGLRAATELGQYGI 265 (358)
T ss_pred ccCCCccHHHHHHHHccc-ccccCcc-------hHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999887 8999863 334444555554 57888999999999988888765 4
Q ss_pred HHH---HHhhcCCCc
Q 001848 984 KRL---EQVIILLLT 995 (1005)
Q Consensus 984 ~~~---~~~lWP~g~ 995 (1005)
.-| ..-+||...
T Consensus 266 ei~~~i~kw~fp~~~ 280 (358)
T PF08405_consen 266 EIFKLIMKWFFPKKD 280 (358)
T ss_pred HHHHHHHHHcCCCCc
Confidence 444 456788754
No 87
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=27.21 E-value=1.4e+02 Score=28.43 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHhHHHHHHHHHHH
Q 001848 21 RIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIIL 56 (1005)
Q Consensus 21 ~~v~~~~~~~~la~ll~~t~~s~wln~~~a~llv~~ 56 (1005)
|+..+|++.++++|++--+-.+.|+-+++|+++..+
T Consensus 44 nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~ 79 (90)
T PF11674_consen 44 NIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLA 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566778888888998655657778888888776643
No 88
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=23.70 E-value=1.8e+02 Score=32.47 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=39.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhhHhHHHHHHHHHHHHhh
Q 001848 9 VNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRY 59 (1005)
Q Consensus 9 ~~~~~l~e~~k~~~v~~~~~~~~la~ll~~t~~s~wln~~~a~llv~~~~~ 59 (1005)
.-.+|++--+=+.++.++++|++|.|+..+ .|.|+++.+.++++.+..|
T Consensus 32 ~l~~~l~~a~~R~~vQL~~vG~vL~~if~~--~~~~~~~l~~~~M~~~As~ 80 (250)
T PF03649_consen 32 GLERDLLIASLRMVVQLLLVGYVLHYIFKL--NNPWLVILWLLVMILVASF 80 (250)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHH
Confidence 445788888888889999999999998633 5899999988888877555
No 89
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=23.43 E-value=2e+02 Score=25.35 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcchhhHhHHHHHHHHHHHHhhc
Q 001848 17 EGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYF 60 (1005)
Q Consensus 17 ~~k~~~v~~~~~~~~la~ll~~t~~s~wln~~~a~llv~~~~~l 60 (1005)
.+|.+++....+.++++.++ ...+.|+-+.++++++...-|+
T Consensus 27 k~K~~a~~~m~~~~~~s~~~--~~~~~~~~~~l~~~~~~~~~~i 68 (71)
T PF04304_consen 27 KAKIRALLMMWLSMGISAFF--FVPNLWVRIVLAAILLIVAIYI 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHh
Confidence 37888877777777777433 2345788777777777655554
No 90
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=23.37 E-value=64 Score=31.48 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=25.3
Q ss_pred CcchhHHHHHHHHHHHH---HhhhhhHHHHHHHHHH
Q 001848 939 GGWIRRKAFWVAKQVLQ---LGMGDAFDDWLMEKIQ 971 (1005)
Q Consensus 939 ~~WlRRq~~~v~kqilq---~~~Gdti~~~i~~~v~ 971 (1005)
++|+|--+--|+--++- .+|||.||++++..+.
T Consensus 11 g~~lrp~l~eIs~AlvA~lLVv~G~~IN~~lrr~l~ 46 (106)
T PF11872_consen 11 GRWLRPYLSEISLALVACLLVVYGDDINRFLRRLLS 46 (106)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 58888776666555543 6899999999998874
No 91
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=20.13 E-value=1.1e+02 Score=31.94 Aligned_cols=43 Identities=16% Similarity=0.532 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCCCCChhHHHHHHHHHHhHhHHhhhc-c-CChhHH
Q 001848 234 MDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLN-L-ANPRFI 277 (1005)
Q Consensus 234 ~e~LL~~LLP~~d~~s~~~r~LLREILA~~VL~Pli~-L-SDPD~I 277 (1005)
.-.++-.|||...++ +.+|.++-=+|.+.||.|++. + .|+++.
T Consensus 6 l~~~ie~LlP~~~~k-kYvr~v~GLili~~il~Pil~l~~~~~~~~ 50 (188)
T PF09581_consen 6 LATFIEMLLPNSKYK-KYVRFVLGLILILAILSPILSLFGGDPDLE 50 (188)
T ss_pred HHHHHHHhCCchhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 345677889988887 899999999999999999999 6 666654
Done!