Query 001848
Match_columns 1005
No_of_seqs 393 out of 1505
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 16:11:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001848.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1145-1149//hhsearch_pdb/001848hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xte_A Serine/threonine-protei 1.0 1 1 172.0 10.2 106 666-773 8-115 (154)
2 4akv_A Sorting nexin-33; trans 1.0 1 1 167.4 4.4 106 664-773 40-149 (386)
3 3iq2_A Sorting nexin-7; SNX7, 1.0 1 1 167.1 12.2 111 663-773 6-125 (138)
4 1ocs_A Sorting nexin GRD19; so 1.0 1 1 166.6 11.3 109 665-773 35-159 (162)
5 2csk_A Sorting nexin 12; SNX12 1.0 1 1 166.2 12.3 115 665-779 10-139 (146)
6 3dyt_A Sorting nexin-9; 3-heli 1.0 1 1 164.6 4.7 106 664-773 19-129 (366)
7 2i4k_A Sorting nexin-1, SNX1; 1.0 1 1 164.0 1.0 108 664-772 2-127 (128)
8 1h6h_A Neutrophil cytosol fact 1.0 1 1 162.5 10.5 111 663-776 18-139 (143)
9 3p0c_A Nischarin; structural g 1.0 1 1 160.3 8.9 104 666-777 23-127 (130)
10 3lui_A Sorting nexin-17, SNX17 1.0 1 1 160.2 7.2 103 665-773 3-109 (115)
No 1
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=1.00 E-value=1 Score=172.05 Aligned_cols=106 Identities=25% Similarity=0.497 Sum_probs=99.4
Q ss_pred EEEEEECEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCCCCCCCCC-CCCHHHHHHHH
Q ss_conf 899980208980898772999999982799748998122019999999970-2378888999522489-89978999999
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLST-GLDVSVIQERC 743 (1005)
Q Consensus 666 i~v~I~~~~i~~~g~k~y~vY~I~V~~~~~~~w~V~RRYSeF~~LH~~Lk~-yp~~~p~LP~K~~f~~-n~d~~fiEkRr 743 (1005)
++|.|++++.+.++++.|++|.|+|+.+ +..|.|+||||||.+||.+|++ ||...++||+|++| + +++++|+|+||
T Consensus 8 ~~v~I~~~~~~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~-g~~~~~~~ie~Rr 85 (154)
T 1xte_A 8 PSVSIPSSDEHREKKKRFTVYKVLVSVG-RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIF-GDNFDPDFIKQRR 85 (154)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCS-SCTTCHHHHHHHH
T ss_pred CEEEECCCEEEECCCCCEEEEEEEEEEC-CEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHH
T ss_conf 8899899589743899889999999989-9799998237999999999987778986538996424-7879999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
Q ss_conf 999999999752988778644421356555
Q 001848 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 744 ~~Le~YLq~LL~~p~i~~s~~l~~FL~~~~ 773 (1005)
.+||.||+.|+.+|.++.++.|+.||+...
T Consensus 86 ~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~ 115 (154)
T 1xte_A 86 AGLNEFIQNLVRYPELYNHPDVRAFLQMDS 115 (154)
T ss_dssp HHHHHHHHHHTTCHHHHTSHHHHHHTTTTC
T ss_pred HHHHHHHHHHHCCHHHCCCHHHHHHHCCCC
T ss_conf 999999999974963406969998738998
No 2
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=167.38 Aligned_cols=106 Identities=23% Similarity=0.346 Sum_probs=96.9
Q ss_pred EEEEEEEECEEEEE--CCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC-CCC-CCCCCCCCCCCCCCCCHHHH
Q ss_conf 22899980208980--898772999999982799748998122019999999970-237-88889995224898997899
Q 001848 664 FKLRCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVI 739 (1005)
Q Consensus 664 v~i~v~I~~~~i~~--~g~k~y~vY~I~V~~~~~~~w~V~RRYSeF~~LH~~Lk~-yp~-~~p~LP~K~~f~~n~d~~fi 739 (1005)
.++.|.|.++..+. +|.++|++|.|+++.. .|.|+||||||.+||.+|.+ ||. ..|+||+|+++ ++++++|+
T Consensus 40 ~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~~---~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~-g~~~~~fi 115 (386)
T 4akv_A 40 HPFACSVEDPTKQTKFKGIKSYISYKLTPTHA---ASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQAT-GRFEEDFI 115 (386)
T ss_dssp SCCCEEEECC------------CCEEEEETTS---SSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC-------CCTT
T ss_pred CCEEEEECCCEEECCCCCCCCEEEEEEEEEEC---CEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCHHHH
T ss_conf 98699973966745778976859999999867---768982788999999999986889878999998235-79998999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
Q ss_conf 9999999999999752988778644421356555
Q 001848 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 740 EkRr~~Le~YLq~LL~~p~i~~s~~l~~FL~~~~ 773 (1005)
++||.+||.||+.|+.+|.++.++.|..||+.++
T Consensus 116 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 116 EKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD 149 (386)
T ss_dssp THHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCC
T ss_conf 9999999999999967974407939999737998
No 3
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=167.13 Aligned_cols=111 Identities=22% Similarity=0.312 Sum_probs=100.5
Q ss_pred CEEEEEEEECEEEEECCCCCEEEEEEEEEECC----CCEEEEEECCCHHHHHHHHHHC-CCC-CCCCCCCCCCCC---CC
Q ss_conf 52289998020898089877299999998279----9748998122019999999970-237-888899952248---98
Q 001848 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS---TG 733 (1005)
Q Consensus 663 ~v~i~v~I~~~~i~~~g~k~y~vY~I~V~~~~----~~~w~V~RRYSeF~~LH~~Lk~-yp~-~~p~LP~K~~f~---~n 733 (1005)
...+.|.|.++.++.+|+++|++|.|+|+... +..|.|+||||||.+||.+|++ ||. ..|+||+|+++. ++
T Consensus 6 ~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~ 85 (138)
T 3iq2_A 6 LKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVER 85 (138)
T ss_dssp CCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGG
T ss_pred CCEEEEEECCCEEECCCCCCEEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCC
T ss_conf 65279998797895479889899999999778876777579982769999999999977868556779961320121025
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
Q ss_conf 9978999999999999999752988778644421356555
Q 001848 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 734 ~d~~fiEkRr~~Le~YLq~LL~~p~i~~s~~l~~FL~~~~ 773 (1005)
++++|+|+||++||.||+.|+++|.+++++.|..||+.++
T Consensus 86 ~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~ 125 (138)
T 3iq2_A 86 FNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQA 125 (138)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHCCCC
T ss_conf 9999999999999999999976971404918983507999
No 4
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=1.00 E-value=1 Score=166.62 Aligned_cols=109 Identities=23% Similarity=0.325 Sum_probs=98.1
Q ss_pred EEEEEEECEEEE---E-CCCCCEEEEEEEEEECC----CCEEEEEECCCHHHHHHHHHHC-C-----CC-CCCCCCCCCC
Q ss_conf 289998020898---0-89877299999998279----9748998122019999999970-2-----37-8888999522
Q 001848 665 KLRCEVLGANIV---K-SDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-F-----QE-YNLHLPPKHF 729 (1005)
Q Consensus 665 ~i~v~I~~~~i~---~-~g~k~y~vY~I~V~~~~----~~~w~V~RRYSeF~~LH~~Lk~-y-----p~-~~p~LP~K~~ 729 (1005)
-+.+.|.++..+ + ++++.|++|.|+|+... +..|.|+||||||.+||++|++ | |. ..|+||+|++
T Consensus 35 ~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~ 114 (162)
T 1ocs_A 35 FLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKIL 114 (162)
T ss_dssp CEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCC
T ss_pred EEEEEEECCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 59999807999624677888776999999997788777650589725999999999999874202689851788999742
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHCCCCCCC
Q ss_conf 48989978999999999999999752988778-644421356555
Q 001848 730 LSTGLDVSVIQERCKLLDRYLKMLLQLPTVSG-SIEVWDFLSVDS 773 (1005)
Q Consensus 730 f~~n~d~~fiEkRr~~Le~YLq~LL~~p~i~~-s~~l~~FL~~~~ 773 (1005)
+.++++++|+|+||.+||.||+.|+++|.++. ++.|..||+.++
T Consensus 115 ~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~ 159 (162)
T 1ocs_A 115 LSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 (162)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHCCCCC
T ss_conf 456799999999999999999999769876637989997677744
No 5
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=166.22 Aligned_cols=115 Identities=19% Similarity=0.290 Sum_probs=100.8
Q ss_pred EEEEEEECEEEEECCCCCEEEEEEEEEECC----CCEEEEEECCCHHHHHHHHHHCCCC-CCCCCCCCCCCC--------
Q ss_conf 289998020898089877299999998279----9748998122019999999970237-888899952248--------
Q 001848 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFLS-------- 731 (1005)
Q Consensus 665 ~i~v~I~~~~i~~~g~k~y~vY~I~V~~~~----~~~w~V~RRYSeF~~LH~~Lk~yp~-~~p~LP~K~~f~-------- 731 (1005)
.+.+.|.++..+.+|++.|++|.|+|+... ...|.|+||||||.+||++|+++|. ..|+||+|+++.
T Consensus 10 ~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iP~lP~K~~~~~~~~~~~~ 89 (146)
T 2csk_A 10 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDE 89 (146)
T ss_dssp CCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSSSSCCCCCCSCCCCCCSSTTCCCS
T ss_pred CEEEEECCCEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 17999848669617987889999999988887676714999219999999999986569717899997143101311556
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC--CCCCCC
Q ss_conf 989978999999999999999752988778644421356555--575568
Q 001848 732 TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS--QTYAFS 779 (1005)
Q Consensus 732 ~n~d~~fiEkRr~~Le~YLq~LL~~p~i~~s~~l~~FL~~~~--~~y~~~ 779 (1005)
++++++|+|+||.+||.||+.|+++|.++.++.+..||+..+ +.|..+
T Consensus 90 g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g 139 (146)
T 2csk_A 90 GIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPG 139 (146)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCCSSCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHCCCCCHHHHHCCC
T ss_conf 77899999999999999999997494030491898563898412331567
No 6
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=1.00 E-value=1 Score=164.55 Aligned_cols=106 Identities=22% Similarity=0.361 Sum_probs=96.1
Q ss_pred EEEEEEEECEEEEE--CCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC-CCC-C-CCCCCCCCCCCCCCCHHH
Q ss_conf 22899980208980--898772999999982799748998122019999999970-237-8-888999522489899789
Q 001848 664 FKLRCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-Y-NLHLPPKHFLSTGLDVSV 738 (1005)
Q Consensus 664 v~i~v~I~~~~i~~--~g~k~y~vY~I~V~~~~~~~w~V~RRYSeF~~LH~~Lk~-yp~-~-~p~LP~K~~f~~n~d~~f 738 (1005)
..+.|.|.++..++ +|.+.|++|.|+++. ..|.|+||||||.+||..|.+ ||. . .|+||+|+++ ++++++|
T Consensus 19 ~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~---~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~-g~~~~~f 94 (366)
T 3dyt_A 19 STFDCVVADPRKGSKMYGLKSYIEYQLTPTN---TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT-GRFEEEF 94 (366)
T ss_dssp SCCCEEEECGGGSSSCCCCCSSCEEEEEETT---CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC------------C
T ss_pred CCEEEEECCCEEECCCCCCCCEEEEEEEEEC---CCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHH
T ss_conf 9869997086462687898686999999964---80789833999999999998868986747899487426-8999899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
Q ss_conf 99999999999999752988778644421356555
Q 001848 739 IQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 739 iEkRr~~Le~YLq~LL~~p~i~~s~~l~~FL~~~~ 773 (1005)
+++||.+||.||+.|+.||.++.++.|+.||+.++
T Consensus 95 ie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 95 IKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD 129 (366)
T ss_dssp HHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCC
T ss_conf 99999999999999967986638859998619996
No 7
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=164.00 Aligned_cols=108 Identities=21% Similarity=0.408 Sum_probs=96.2
Q ss_pred EEEEEEEECEEEEECCCCCEEEEEEEEEEC----CCCEEEEEECCCHHHHHHHHHHC-CCC---CCCCCCCCCCCCCC--
Q ss_conf 228999802089808987729999999827----99748998122019999999970-237---88889995224898--
Q 001848 664 FKLRCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF-FQE---YNLHLPPKHFLSTG-- 733 (1005)
Q Consensus 664 v~i~v~I~~~~i~~~g~k~y~vY~I~V~~~----~~~~w~V~RRYSeF~~LH~~Lk~-yp~---~~p~LP~K~~f~~n-- 733 (1005)
+.++|.|.+++.+++|++.|++|.|+|+.. ....|.|+||||||.+||++|++ ||. ..|+||+|+++ ++
T Consensus 2 ~~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~-~~~~ 80 (128)
T 2i4k_A 2 FDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI-GMTK 80 (128)
T ss_dssp CSCCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSS-SSSS
T ss_pred EEEEEEECCCEEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CHHH
T ss_conf 248999779549638973789999999976887788838999584999999999998578887476999998602-1123
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC
Q ss_conf --------997899999999999999975298877864442135655
Q 001848 734 --------LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1005)
Q Consensus 734 --------~d~~fiEkRr~~Le~YLq~LL~~p~i~~s~~l~~FL~~~ 772 (1005)
++++|+|+||.+||.||+.|+++|.+++++.+..||+.+
T Consensus 81 ~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 81 VKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC
T ss_conf 33067777898999999999999999997693310584899860889
No 8
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=1.00 E-value=1 Score=162.49 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=97.4
Q ss_pred CEEEEEEEECEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC-CCC---------CCCCCCCCCCCCC
Q ss_conf 522899980208980898772999999982799748998122019999999970-237---------8888999522489
Q 001848 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------YNLHLPPKHFLST 732 (1005)
Q Consensus 663 ~v~i~v~I~~~~i~~~g~k~y~vY~I~V~~~~~~~w~V~RRYSeF~~LH~~Lk~-yp~---------~~p~LP~K~~f~~ 732 (1005)
.+.++|.|++++..+ ++..|++|.|+|+..++..|.|+||||||++||++|++ ||. ..|+||+|+++ +
T Consensus 18 ~~~i~v~I~~~e~~~-~~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~-~ 95 (143)
T 1h6h_A 18 DVAISANIADIEEKR-GFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYV-G 95 (143)
T ss_dssp TCEEEEEEEEEEEEC-SSSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCS-S
T ss_pred CCEEEEEECCCCCCC-CCCCEEEEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-C
T ss_conf 773899984830147-88776999999998189789999569999999999998774010368888873559898356-8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHCCCCCCCCCC
Q ss_conf 89978999999999999999752988-778644421356555575
Q 001848 733 GLDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQTY 776 (1005)
Q Consensus 733 n~d~~fiEkRr~~Le~YLq~LL~~p~-i~~s~~l~~FL~~~~~~y 776 (1005)
+ +++|+|+||.+||.||+.|+++|. ++.|+.+++||+..+.++
T Consensus 96 ~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~d~ 139 (143)
T 1h6h_A 96 V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDS 139 (143)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCCC
T ss_conf 6-8899999999999999999838776655989999868995313
No 9
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=1.00 E-value=1 Score=160.29 Aligned_cols=104 Identities=30% Similarity=0.478 Sum_probs=93.6
Q ss_pred EEEEEECEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 899980208980898772999999982799748998122019999999970-2378888999522489899789999999
Q 001848 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCK 744 (1005)
Q Consensus 666 i~v~I~~~~i~~~g~k~y~vY~I~V~~~~~~~w~V~RRYSeF~~LH~~Lk~-yp~~~p~LP~K~~f~~n~d~~fiEkRr~ 744 (1005)
..+.|.+++ .++.|++|.|+|+.+ +..|.|+||||||.+||++|++ |+...|+||+|+++ ++++++|+|+||.
T Consensus 23 ~~v~I~~~~----~~~~y~~Y~I~v~~~-~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP~K~~~-g~~~~~~ie~Rr~ 96 (130)
T 3p0c_A 23 MEARVVGSE----LVDTYTVYIIQVTDG-SHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKII-GKNSRSLVEKREK 96 (130)
T ss_dssp CEEEEEEEE----CSSSSCEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCCCCCCC-SCCCSCSHHHHHH
T ss_pred EEEEEEECC----CCCCEEEEEEEEEEC-CEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCHHHHHHHHH
T ss_conf 588987222----468879999999979-9479998318879999999999859787779973203-3689899999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 999999997529887786444213565555755
Q 001848 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYA 777 (1005)
Q Consensus 745 ~Le~YLq~LL~~p~i~~s~~l~~FL~~~~~~y~ 777 (1005)
+||.||+.|+++|.++.++.+..||+... |.
T Consensus 97 ~Le~yL~~l~~~p~l~~s~~l~~FL~~~~--~~ 127 (130)
T 3p0c_A 97 DLEVYLQKLLAAFPGVTPRVLAHFLHFHF--YE 127 (130)
T ss_dssp HHHHHHHHHHHTSCSEECHHHHHHHHSCT--TC
T ss_pred HHHHHHHHHHCCHHHHCCHHHHHHHCCCC--CC
T ss_conf 99999999973951445879998709976--55
No 10
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=1.00 E-value=1 Score=160.18 Aligned_cols=103 Identities=18% Similarity=0.355 Sum_probs=94.1
Q ss_pred EEEEEEECEEEEEC--CCCCEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC-CCC-CCCCCCCCCCCCCCCCHHHHH
Q ss_conf 28999802089808--98772999999982799748998122019999999970-237-888899952248989978999
Q 001848 665 KLRCEVLGANIVKS--DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQ 740 (1005)
Q Consensus 665 ~i~v~I~~~~i~~~--g~k~y~vY~I~V~~~~~~~w~V~RRYSeF~~LH~~Lk~-yp~-~~p~LP~K~~f~~n~d~~fiE 740 (1005)
.+++.|++++.+.+ |+++|++|.|+|. ..|.|+||||||.+||.+|++ ||. ..|+||+|+++ +++++|+|
T Consensus 3 ~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~----~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~--~~~~~~ie 76 (115)
T 3lui_A 3 AMHFSIPETESRSGDSGGSAYVAYNIHVN----GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLF--SLTPAEVE 76 (115)
T ss_dssp --CEEEEEEEEEC-----CCEEEEEEEET----TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSS--CCCHHHHH
T ss_pred CEEEEECCEEEECCCCCCCCEEEEEEEEC----CEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCHHHHH
T ss_conf 57999789689537899978899999989----7389995288899999999887689868999797366--89989999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
Q ss_conf 999999999999752988778644421356555
Q 001848 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1005)
Q Consensus 741 kRr~~Le~YLq~LL~~p~i~~s~~l~~FL~~~~ 773 (1005)
+||.+||.||+.|+++|.+++++.++.||+.++
T Consensus 77 ~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 109 (115)
T 3lui_A 77 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ 109 (115)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHCCHHHHHHHCCCH
T ss_conf 999999999999974951414918999878077
Done!