BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001849
(1005 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 32/214 (14%)
Query: 562 LVSFPEVALPSKLKKIEISSCDA--LKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQL 619
L FP+ A +L ++ + DA L LP+ + LE L ++ A +
Sbjct: 93 LPQFPDQAF--RLSHLQHXTIDAAGLXELPDT--XQQFAGLETLTLARNPLRALPASIAS 148
Query: 620 PPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSK-NELPA 678
L+ L I C + L +SG EH + + SL ++ LPA
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASG--------EHQGLVNLQSLRLEWTGIRSLPA 200
Query: 679 T------LESLEVGNLP-----------PSLKLLLVWGCSKLESIAEMLDNNTSLEKINI 721
+ L+SL++ N P P L+ L + GC+ L + + L+++ +
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260
Query: 722 SGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSP 755
C NL TLP +H L QL+++ + C NL P
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 25/180 (13%)
Query: 561 SLVSFPEVALPS------KLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY- 613
+L P ALP+ +L+++ I +C L LPE + T++S E + SL
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLE 191
Query: 614 IAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRR-YTSSLLEHLEIYSCPSLTCIFS 672
G++ P+ I + N+++L + + G + LE L++ C +L
Sbjct: 192 WTGIRSLPA----SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL----- 242
Query: 673 KNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPS 732
+N P + G P LK L++ CS L ++ + T LEK+++ GC NL LPS
Sbjct: 243 RNYPP-----IFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 656 LEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSL----KLLLVWGCSKLESIAEMLD 711
L L I +CP LT ELP L S + L L L W + + S+ +
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEW--TGIRSLPASIA 203
Query: 712 NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPE--GGLPCAKLAMLAI 769
N +L+ + I L L +H+L +L+E+ + C L + P GG A L L +
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLIL 260
Query: 770 YNCKRLEALPKGLHNLKSLQELRIGKGV---ALPSLEEDGLPTNLHVLL 815
+C L LP +H L L++L + V LPSL LP N +L+
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILV 308
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Query: 32 FSRYLRHLSYIRGDYDGVQRFGDLYDIQ-------HLRTFLPVILSNSKPGYLA------ 78
S++ RH + R + R + + Q L+ ++ ++PG +A
Sbjct: 32 LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91
Query: 79 --PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYN 136
P + +L L+ ++ + ELPD+ L L L+ +R LP S++ L
Sbjct: 92 PLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNR 151
Query: 137 LHSLLLEDCDRLEKLCADMGN---------LVKLHHLKNSNTKSLEEMPVGIGRLTCLQT 187
L L + C L +L + + LV L L+ T + +P I L L++
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKS 210
Query: 188 L 188
L
Sbjct: 211 L 211
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 58 IQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYL 117
++HL + LS + + SML +LL+LQ +++ G + P + L YLR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 118 NLSGTEIRTLPESV-SKLYNLHSLLLE 143
N+SG ++ TL ESV + NL +L+L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 87 KLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLED 144
+L SL L G ++ LP+ V L L YLNLS ++++LP V KL L L L +
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 145 CDRLEKLCADMGNLVKLHHLKNSN--TKSLEEMPVGI-GRLTCLQ 186
++L+ L G KL LK+ L+ +P G+ RLT LQ
Sbjct: 109 TNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 131/331 (39%), Gaps = 88/331 (26%)
Query: 556 IYGCRSLVSFPEVALPSKLKK--IEISSCDALKSLPE--AWMCDTNSSLE---------I 602
+ C SL PE LP LK ++ ++ AL LP ++ +N+ LE
Sbjct: 97 VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154
Query: 603 LEISGCDSLTYIAGVQLPPSLKRL--------KICHCDNIRTLTVEEGIQCSSGRRYT-- 652
L+I D+ + LPPSL+ + ++ N+ LT S +
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP 214
Query: 653 ---------SSLLEHL-EIYSCPSLTCIFSKN-------ELPATLESLEVGN-------- 687
+++LE L E+ + P LT I++ N +LP +LE+L V +
Sbjct: 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE 274
Query: 688 LPPSLKLL-----LVWGCSKL-----------ESIAEMLDNNTSLEKINISGCG--NLQT 729
LP SL L + G S+L I + D SLE++N+S L
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA 334
Query: 730 LPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYN-CKRLEALPKGLHNLKSL 788
LP L L IAS +L PE LP + YN + +P +S+
Sbjct: 335 LPPRLERL-------IASFNHLAEVPE--LPQNLKQLHVEYNPLREFPDIP------ESV 379
Query: 789 QELRIGKGVALPSLEEDGLPTNLHVLLINGN 819
++LR+ +A E LP NL L + N
Sbjct: 380 EDLRMNSHLA----EVPELPQNLKQLHVETN 406
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 91 LRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLED 144
++V L RI+ +P V L+ L+ LN++ +++++P+ V +L +L + L D
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 85 LLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLED 144
+ K L L G + ELP + +L LR L+LS + +LP + + L D
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302
Query: 145 CDRLEKLCADMGNLVKLHHL 164
+ + L + GNL L L
Sbjct: 303 -NMVTTLPWEFGNLCNLQFL 321
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 82 LPKLLK-LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSL 140
LP +K L +LRV L R+ LP +G L+Y + TLP L NL L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Query: 141 LLE 143
+E
Sbjct: 322 GVE 324
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCD 146
L ++R +L G ++ ++ ++ +L L YL L+G ++++LP V KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 147 RLEKLCADMGN-LVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRE-- 203
+L+ L + + L L +L N L+ +P G+ L L + + L E
Sbjct: 120 QLQSLPDGVFDKLTNLTYL-NLAHNQLQSLPKGV--FDKLTNLTELDLSYNQLQSLPEGV 176
Query: 204 LKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLR 245
LTQL+ N + D DR +L+ +WL
Sbjct: 177 FDKLTQLKDLRLYQN-----QLKSVPDGVFDRLTSLQYIWLH 213
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 43 RGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIL 102
+G + G FGDL I+ I N + + L KL +R+ +
Sbjct: 47 KGAFSG---FGDLEKIE--------ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95
Query: 103 ELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKL 161
P++ +L L+YL +S T I+ LP+ V K+++L +LL+ D + + + V L
Sbjct: 96 N-PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
Query: 600 LEILEISGCDSLTYIAGVQLP--PSLKRLKICHCDNIRTLTVEEGIQCSSGRRY---TSS 654
LE +EIS D L I P L ++I +N+ + E Q +Y +++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNT 114
Query: 655 LLEHL-EIYSCPSLTCIFSKNELPATLESLEVGNLPP-SLKLLLVW-GCSKLESIAEMLD 711
++HL +++ SL + + + ++E + S + +++W + ++ I
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF 174
Query: 712 NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLP-CAKLAMLAIY 770
N T L+++N+S NL+ LP+ + + I S + S P GL KL + Y
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234
Query: 771 NCKRLEALPK 780
N K+L L K
Sbjct: 235 NLKKLPTLEK 244
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 104 LPDSVGDLRYLR----YLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV 159
+P S+G L LR +LN+ EI P+ + + L +L+L+ D ++ + + N
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 160 KLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
L+ + SN + E+P IGRL L L
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 43 RGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIL 102
+G + G FGDL I+ I N + + L KL +R+ +
Sbjct: 47 KGAFSG---FGDLEKIE--------ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95
Query: 103 ELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKL 161
P++ +L L+YL +S T I+ LP+ V K+++L +LL+ D + + + V L
Sbjct: 96 N-PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
Query: 600 LEILEISGCDSLTYIAGVQLP--PSLKRLKICHCDNIRTLTVEEGIQCSSGRRY---TSS 654
LE +EIS D L I P L ++I +N+ + E Q +Y +++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNT 114
Query: 655 LLEHL-EIYSCPSLTCIFSKNELPATLESLEVGNLPP-SLKLLLVW-GCSKLESIAEMLD 711
++HL +++ SL + + + ++E + S + +++W + ++ I
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174
Query: 712 NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLP-CAKLAMLAIY 770
N T L+++N+S NL+ LP+ + + I S + S P GL KL + Y
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234
Query: 771 NCKRLEALPK 780
N K+L L K
Sbjct: 235 NLKKLPTLEK 244
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 104 LPDSVGDLRYLR----YLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV 159
+P S+G L LR +LN+ EI P+ + + L +L+L+ D ++ + + N
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 160 KLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
L+ + SN + E+P IGRL L L
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 690 PSLKLLLVWGCSK--------LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQ 741
PSL L + G +K LE++ + + + S + I S C NLQ L NL LQ
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-----LRNLSHLQ 379
Query: 742 EISIASCGNLVSSPEGGLPCAKLAMLAI-YNCKRLEALPKGLHNLKSLQELRIGKGVALP 800
++++ L E C +L +L + + +++ NL L+ L + +
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439
Query: 801 SLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCD 848
S E+ DGLP L L + GN K I++ L L + CD
Sbjct: 440 SSEQLFDGLPA-LQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD 487
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCD 146
L ++R +L G ++ ++ ++ +L L YL L+G ++++LP V KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 147 RLEKL----CADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLR 202
+L+ L + NL L+ N L+ +P G+ L L + + L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHN----QLQSLPKGV--FDKLTNLTRLDLDNNQLQSLP 173
Query: 203 E--LKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244
E LTQL+ N + D DR +L +WL
Sbjct: 174 EGVFDKLTQLKQLSL-----NDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 32/175 (18%)
Query: 34 RYLRHLSYIRGDYDGVQR-----FGDLYDI------------------QHLRTFLPVILS 70
R L L+++ DY+ +Q F DL ++ HL + L
Sbjct: 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 71 NSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGD-LRYLRYLNLSGTEIRTLPE 129
++ L + +L KL+ LR L ++ +P D L L+ L+LS +++++P
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELR---LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 130 -SVSKLYNLHSLLLE----DCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI 179
+ +L L ++ L DC R E L + +K+ ++L E P G+
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDGV 227
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 38 HLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLR 97
HLS + + FG L +++L ++ N S+ P L LQ+LR+ ++
Sbjct: 111 HLSSLSSSW-----FGPLSSLKYLN-----LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 160
Query: 98 GYRILELPDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLH--SLLLEDCDRLEKLCAD 154
+ + D G L L L + +R +S+ + ++H +L L + L ++ AD
Sbjct: 161 TFSEIRRIDFAG-LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 219
Query: 155 MGNLVKLHHLKNSNTKSLEEMPVGIGRLT 183
+ + V+ L+++N + P+ + ++
Sbjct: 220 ILSSVRYLELRDTNLARFQFSPLPVDEVS 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,851,139
Number of Sequences: 62578
Number of extensions: 1187586
Number of successful extensions: 2408
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2370
Number of HSP's gapped (non-prelim): 67
length of query: 1005
length of database: 14,973,337
effective HSP length: 108
effective length of query: 897
effective length of database: 8,214,913
effective search space: 7368776961
effective search space used: 7368776961
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)