Query 001849
Match_columns 1005
No_of_seqs 711 out of 5256
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3E-41 6.4E-46 424.0 25.5 227 525-799 380-607 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-40 5.6E-45 415.5 27.9 302 525-888 284-588 (968)
3 PLN03210 Resistant to P. syrin 99.9 9.1E-26 2E-30 282.5 30.2 186 1-188 490-686 (1153)
4 KOG0472 Leucine-rich repeat pr 99.9 4.3E-30 9.4E-35 256.8 -9.4 100 87-188 43-142 (565)
5 PLN03210 Resistant to P. syrin 99.9 9.8E-26 2.1E-30 282.2 23.0 408 489-982 552-981 (1153)
6 KOG0618 Serine/threonine phosp 99.9 4E-29 8.6E-34 275.9 -7.6 262 525-846 241-509 (1081)
7 KOG0472 Leucine-rich repeat pr 99.9 1.3E-29 2.8E-34 253.4 -11.6 421 60-608 46-468 (565)
8 KOG4194 Membrane glycoprotein 99.9 2.3E-26 5E-31 240.7 3.4 360 497-926 80-447 (873)
9 KOG4194 Membrane glycoprotein 99.9 7.4E-26 1.6E-30 236.9 4.8 359 91-558 80-448 (873)
10 KOG0618 Serine/threonine phosp 99.9 1.4E-26 2.9E-31 256.1 -4.5 462 87-795 43-509 (1081)
11 KOG0444 Cytoskeletal regulator 99.9 5.3E-25 1.2E-29 231.7 -3.5 365 467-931 6-375 (1255)
12 KOG0444 Cytoskeletal regulator 99.9 9.6E-25 2.1E-29 229.9 -6.3 345 466-889 30-380 (1255)
13 KOG4658 Apoptotic ATPase [Sign 99.9 3.2E-22 6.9E-27 236.2 11.1 184 1-193 483-675 (889)
14 PRK15387 E3 ubiquitin-protein 99.6 2.4E-15 5.1E-20 174.2 15.7 92 525-631 201-292 (788)
15 KOG4237 Extracellular matrix p 99.6 9.2E-17 2E-21 161.9 0.6 116 78-194 79-199 (498)
16 KOG4237 Extracellular matrix p 99.6 3.4E-17 7.4E-22 164.9 -2.5 88 465-561 271-358 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 6E-15 1.3E-19 170.8 14.6 110 497-631 203-312 (788)
18 KOG0617 Ras suppressor protein 99.5 3.3E-16 7.2E-21 139.1 -4.7 130 53-190 27-157 (264)
19 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.7E-18 161.4 11.3 74 549-631 178-251 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.4 1.3E-13 2.9E-18 163.7 9.3 261 53-335 517-787 (889)
21 KOG0617 Ras suppressor protein 99.4 3.7E-15 8.1E-20 132.5 -2.9 146 34-190 33-180 (264)
22 PRK15370 E3 ubiquitin-protein 99.4 2.4E-13 5.1E-18 159.1 10.6 83 89-179 178-260 (754)
23 cd00116 LRR_RI Leucine-rich re 99.1 5.5E-12 1.2E-16 137.9 -0.5 60 690-749 137-204 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 3.4E-12 7.5E-17 139.6 -3.3 60 690-749 81-148 (319)
25 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 106.4 5.1 131 53-194 13-151 (175)
26 KOG4341 F-box protein containi 98.9 4.8E-11 1E-15 122.4 -5.3 257 546-848 161-437 (483)
27 KOG4341 F-box protein containi 98.9 5.6E-11 1.2E-15 121.8 -6.1 139 492-634 187-333 (483)
28 KOG0532 Leucine-rich repeat (L 98.8 4.1E-10 8.9E-15 119.9 -3.5 104 82-188 91-194 (722)
29 PF14580 LRR_9: Leucine-rich r 98.8 4.7E-09 1E-13 99.6 3.4 100 87-190 17-120 (175)
30 COG4886 Leucine-rich repeat (L 98.7 7.6E-09 1.7E-13 116.4 5.3 104 85-190 112-216 (394)
31 KOG3207 Beta-tubulin folding c 98.7 1.7E-09 3.7E-14 111.8 -0.2 186 710-904 142-335 (505)
32 KOG0532 Leucine-rich repeat (L 98.6 1.7E-09 3.8E-14 115.3 -3.3 102 87-191 73-174 (722)
33 COG4886 Leucine-rich repeat (L 98.6 4.7E-08 1E-12 110.0 5.8 126 54-188 111-237 (394)
34 KOG3207 Beta-tubulin folding c 98.6 1.5E-08 3.3E-13 104.9 0.8 149 34-188 121-276 (505)
35 PF13855 LRR_8: Leucine rich r 98.5 6.7E-08 1.4E-12 75.1 3.7 57 89-145 1-59 (61)
36 PRK15386 type III secretion pr 98.5 4E-07 8.8E-12 97.1 10.6 93 710-817 48-140 (426)
37 PLN03150 hypothetical protein; 98.5 1.1E-07 2.4E-12 111.7 6.7 99 90-188 419-520 (623)
38 KOG1259 Nischarin, modulator o 98.5 2.4E-08 5.2E-13 97.9 -0.1 100 87-189 282-405 (490)
39 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 72.8 3.8 58 112-170 1-60 (61)
40 PLN03150 hypothetical protein; 98.4 2.9E-07 6.2E-12 108.2 6.2 111 691-801 419-530 (623)
41 KOG1259 Nischarin, modulator o 98.4 5.6E-08 1.2E-12 95.4 -0.3 134 108-251 280-413 (490)
42 PRK15386 type III secretion pr 98.3 1.7E-06 3.6E-11 92.5 9.4 40 689-730 71-110 (426)
43 PF12799 LRR_4: Leucine Rich r 98.2 9.3E-07 2E-11 62.3 3.4 40 89-128 1-40 (44)
44 KOG2120 SCF ubiquitin ligase, 98.2 6.2E-08 1.3E-12 95.2 -4.2 182 690-905 185-373 (419)
45 KOG0531 Protein phosphatase 1, 98.1 3.7E-07 8.1E-12 102.6 -1.1 107 80-190 86-193 (414)
46 KOG2120 SCF ubiquitin ligase, 98.1 4.7E-08 1E-12 96.0 -7.2 88 525-612 185-274 (419)
47 PF12799 LRR_4: Leucine Rich r 97.9 7.5E-06 1.6E-10 57.7 3.0 40 112-152 1-40 (44)
48 KOG1909 Ran GTPase-activating 97.9 2.4E-06 5.2E-11 86.6 0.6 83 690-773 30-131 (382)
49 KOG4579 Leucine-rich repeat (L 97.8 4.4E-06 9.5E-11 72.7 -0.2 91 86-178 50-141 (177)
50 KOG1859 Leucine-rich repeat pr 97.8 9.6E-07 2.1E-11 97.4 -6.0 103 82-188 102-237 (1096)
51 KOG1909 Ran GTPase-activating 97.8 4.1E-06 9E-11 85.0 -1.2 217 705-930 21-282 (382)
52 KOG0531 Protein phosphatase 1, 97.7 8E-06 1.7E-10 91.9 0.7 191 525-795 72-264 (414)
53 KOG2982 Uncharacterized conser 97.5 4.1E-05 8.9E-10 75.8 2.3 108 496-608 46-156 (418)
54 KOG4579 Leucine-rich repeat (L 97.5 1.4E-05 3.1E-10 69.6 -1.1 93 54-154 48-141 (177)
55 KOG3665 ZYG-1-like serine/thre 97.5 6E-05 1.3E-09 88.4 3.2 105 59-170 122-231 (699)
56 KOG2982 Uncharacterized conser 97.5 0.00016 3.5E-09 71.8 5.2 189 711-911 68-265 (418)
57 KOG1859 Leucine-rich repeat pr 97.4 5.8E-06 1.3E-10 91.4 -5.6 103 87-194 162-265 (1096)
58 KOG1947 Leucine rich repeat pr 97.3 2.3E-05 5.1E-10 91.3 -3.1 64 571-634 242-308 (482)
59 KOG1644 U2-associated snRNP A' 97.3 0.00035 7.5E-09 65.7 5.0 103 87-192 40-149 (233)
60 KOG1947 Leucine rich repeat pr 97.3 1.9E-05 4.1E-10 92.1 -4.5 82 832-934 357-443 (482)
61 KOG3665 ZYG-1-like serine/thre 97.2 0.00018 3.9E-09 84.4 3.4 129 34-171 122-262 (699)
62 COG5238 RNA1 Ran GTPase-activa 96.9 0.00017 3.7E-09 70.6 -0.9 94 82-176 23-136 (388)
63 PF00560 LRR_1: Leucine Rich R 96.5 0.00096 2.1E-08 38.9 0.6 19 114-132 2-20 (22)
64 KOG1644 U2-associated snRNP A' 96.4 0.0034 7.4E-08 59.3 4.2 99 91-193 21-123 (233)
65 KOG2123 Uncharacterized conser 96.4 0.00041 8.9E-09 68.3 -2.2 99 88-189 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.3 0.0019 4.1E-08 63.8 1.7 104 87-193 41-153 (260)
67 KOG2123 Uncharacterized conser 96.0 0.0007 1.5E-08 66.8 -2.5 80 85-165 36-123 (388)
68 COG5238 RNA1 Ran GTPase-activa 96.0 0.00097 2.1E-08 65.5 -1.8 83 690-773 30-131 (388)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.003 6.4E-08 36.9 0.7 22 90-111 1-22 (22)
70 KOG2739 Leucine-rich acidic nu 95.6 0.0082 1.8E-07 59.5 2.8 113 397-536 41-154 (260)
71 PF13306 LRR_5: Leucine rich r 95.3 0.048 1E-06 49.9 6.8 118 53-185 6-128 (129)
72 PF13504 LRR_7: Leucine rich r 94.8 0.017 3.7E-07 31.1 1.3 16 113-128 2-17 (17)
73 KOG0473 Leucine-rich repeat pr 94.6 0.0015 3.3E-08 62.6 -5.2 87 84-171 37-123 (326)
74 KOG0473 Leucine-rich repeat pr 94.6 0.0019 4.2E-08 62.0 -4.6 88 101-190 30-118 (326)
75 PF13504 LRR_7: Leucine rich r 93.9 0.039 8.5E-07 29.7 1.5 17 89-105 1-17 (17)
76 PF13306 LRR_5: Leucine rich r 93.6 0.14 3.1E-06 46.7 5.8 102 80-188 2-108 (129)
77 smart00369 LRR_TYP Leucine-ric 92.1 0.13 2.9E-06 31.3 2.2 20 111-130 1-20 (26)
78 smart00370 LRR Leucine-rich re 92.1 0.13 2.9E-06 31.3 2.2 20 111-130 1-20 (26)
79 KOG3864 Uncharacterized conser 92.0 0.034 7.4E-07 52.9 -0.8 85 809-906 101-187 (221)
80 KOG3864 Uncharacterized conser 91.9 0.024 5.2E-07 53.8 -1.8 82 762-846 101-185 (221)
81 smart00370 LRR Leucine-rich re 87.2 0.46 9.9E-06 28.9 1.8 21 88-108 1-21 (26)
82 smart00369 LRR_TYP Leucine-ric 87.2 0.46 9.9E-06 28.9 1.8 21 88-108 1-21 (26)
83 smart00365 LRR_SD22 Leucine-ri 79.0 1.6 3.4E-05 26.6 1.7 17 111-127 1-17 (26)
84 smart00364 LRR_BAC Leucine-ric 77.9 1.4 3.1E-05 26.7 1.3 17 113-129 3-19 (26)
85 smart00367 LRR_CC Leucine-rich 72.4 2.5 5.5E-05 25.7 1.4 15 895-909 2-16 (26)
86 PF13516 LRR_6: Leucine Rich r 69.6 1.8 3.9E-05 25.7 0.4 14 112-125 2-15 (24)
87 KOG4308 LRR-containing protein 61.5 0.13 2.8E-06 58.2 -10.4 106 692-797 89-215 (478)
88 smart00368 LRR_RI Leucine rich 56.0 8.9 0.00019 23.8 1.7 14 112-125 2-15 (28)
89 KOG3763 mRNA export factor TAP 45.1 10 0.00022 42.6 1.1 42 525-566 244-287 (585)
90 KOG4308 LRR-containing protein 43.4 1 2.2E-05 51.1 -7.0 85 690-774 115-216 (478)
91 KOG3763 mRNA export factor TAP 29.6 22 0.00047 40.0 0.7 35 690-724 218-254 (585)
92 PF05725 FNIP: FNIP Repeat; I 27.0 84 0.0018 22.0 3.1 17 911-927 27-43 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-41 Score=423.98 Aligned_cols=227 Identities=14% Similarity=0.090 Sum_probs=159.4
Q ss_pred ccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEE
Q 001849 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (1005)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 603 (1005)
++|+.|++++|...+.+|..+..+++|+.|++++|.....+|. +..+++|+.|++++|.....++..+ ..+++|+.|
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L 457 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQML 457 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEE
Confidence 6788888888888788888888999999999999876655553 4567889999999987666666544 567888999
Q ss_pred EEeCCCCCCcccCCCCCCCcceEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhccc
Q 001849 604 EISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESL 683 (1005)
Q Consensus 604 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~ 683 (1005)
++++|.....++.....++|+.|++++|...+.+|..
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~------------------------------------------- 494 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK------------------------------------------- 494 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCccCCccChh-------------------------------------------
Confidence 9988876655555444456666666666433322210
Q ss_pred ccCCCCCCccEEEEcCCCChhhHHHhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCccc
Q 001849 684 EVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAK 763 (1005)
Q Consensus 684 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 763 (1005)
+.. .++|++|++++|...+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|+..+.+|..+..+++
T Consensus 495 -~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 495 -LGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred -hhh-hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 011 146777777777777777777777777888888877777777777777777888888877766677777767777
Q ss_pred ccccccccccccccCccccCCCcccceeecccCCCC
Q 001849 764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVAL 799 (1005)
Q Consensus 764 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l 799 (1005)
|+.|++++|+..+.+|.. +.+..+....+.+|+.+
T Consensus 573 L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 573 LVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred cCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence 777788877777777653 22233334444454433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-40 Score=415.50 Aligned_cols=302 Identities=16% Similarity=0.126 Sum_probs=195.6
Q ss_pred ccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEE
Q 001849 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (1005)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 603 (1005)
++|++|++++|...+.+|..+..+++|+.|++++|.....+|. +..+++|+.|++++|.....+|..+ ..+++|+.|
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L 361 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVL 361 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEE
Confidence 6788888888877778888889999999999999876665553 4568889999999997777777665 678889999
Q ss_pred EEeCCCCCCcccCC-CCCCCcceEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhcc
Q 001849 604 EISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES 682 (1005)
Q Consensus 604 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 682 (1005)
++++|.....++.. ...++|+.|++++|...+.+|..
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~------------------------------------------ 399 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS------------------------------------------ 399 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH------------------------------------------
Confidence 99888544444332 23355666666655432222210
Q ss_pred cccCCCCCCccEEEEcCCCChhhHHHhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCcc
Q 001849 683 LEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA 762 (1005)
Q Consensus 683 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 762 (1005)
+.. .++|+.|++++|...+.+|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|... ..+
T Consensus 400 --~~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~ 475 (968)
T PLN00113 400 --LGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSK 475 (968)
T ss_pred --HhC-CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccc
Confidence 011 1567777777777777777777777777777777777777777667777777777777776655555432 346
Q ss_pred cccccccccccccccCccccCCCcccceeecccCCCCCcccCC-CCCCccceEEecCchhhhhhhhhcCccccccCccce
Q 001849 763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQ 841 (1005)
Q Consensus 763 ~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 841 (1005)
+|+.|++++|.+.+.+|..+.++++|++|++++|.....+|.. ..+++|++|++++|......+ ..+..+++|+.
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~ 551 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQ 551 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCE
Confidence 7777777777777777777777777777777776555555543 334555555555555444333 23455555555
Q ss_pred eeeeccCCCccccCCCCCCCCCCcccCCCCCcceeeecCCCCCcccc
Q 001849 842 LTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT 888 (1005)
Q Consensus 842 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 888 (1005)
|++++|.. ...+|... ..+++|++|++++|+..+.+|
T Consensus 552 L~Ls~N~l-~~~~p~~l---------~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQL-SGEIPKNL---------GNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcc-cccCChhH---------hcCcccCEEeccCCcceeeCC
Confidence 55555432 22344333 244555555555554444454
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=9.1e-26 Score=282.50 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=104.7
Q ss_pred CchhHHHHHHHHhccce-------EEEEccc--ccccccccCcceeEEEEEcCCCcccc-ccccccCCCceeEEeccccc
Q 001849 1 MHDLVSDLAQWAAGEMY-------FTMEYTS--EVNKQQRFSRYLRHLSYIRGDYDGVQ-RFGDLYDIQHLRTFLPVILS 70 (1005)
Q Consensus 1 mHDlv~dla~~~s~~~~-------~~~~~~~--~~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~ 70 (1005)
|||++||||+++++++. +.+.... ..-....-.+.++++++......... ...+|.++++||.|.++...
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999997753 2221110 00000111245677766544433221 12346667777777665432
Q ss_pred CCCCCCCCcccccccccC-CCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccc
Q 001849 71 NSKPGYLAPSMLPKLLKL-QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLE 149 (1005)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~ 149 (1005)
..........+|..+..+ .+||+|++.++.++.+|..| ...+|++|++++|+++.+|.++..+++|++|+|++|+.++
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 100011122344444433 45777777777777776665 4567777777777777776666677777777777666566
Q ss_pred cchhhhcccCCCCEEEccCCcccccccccCCcccccccc
Q 001849 150 KLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (1005)
Q Consensus 150 ~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~L 188 (1005)
.+| .++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 665 36666667777776665455555444444444433
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=4.3e-30 Score=256.78 Aligned_cols=100 Identities=29% Similarity=0.465 Sum_probs=67.9
Q ss_pred cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCEEEc
Q 001849 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN 166 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (1005)
.-..|..|++++|.+..+-+.+.++..|.+|++.+|++.++|++|+.+..++.|+.++ +.+..+|++++.+.+|++|+.
T Consensus 43 ~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhc
Confidence 3344556667777776666666777777777777777777777777777777777777 456667777777777777777
Q ss_pred cCCcccccccccCCcccccccc
Q 001849 167 SNTKSLEEMPVGIGRLTCLQTL 188 (1005)
Q Consensus 167 ~~n~~~~~~p~~i~~L~~L~~L 188 (1005)
++|. ...+|++++++-.|..|
T Consensus 122 s~n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 122 SSNE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred cccc-eeecCchHHHHhhhhhh
Confidence 7776 66666666666555544
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=9.8e-26 Score=282.24 Aligned_cols=408 Identities=20% Similarity=0.283 Sum_probs=239.5
Q ss_pred CccccCCCccEEEeccCC--C---cc-ccchhhHHHHHHHhhccccEEeeccccCccccCcccCCCCCccEEEEcCCCCc
Q 001849 489 GLLQDVCSLKSLEIRSCP--K---LQ-SLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSL 562 (1005)
Q Consensus 489 ~~~~~l~~L~~L~l~~c~--~---l~-~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 562 (1005)
.+|..+.+|+.|.+.... . .. .++ ..+..++++|+.|++.+++ ++.+|..+ .+.+|++|++.+|. +
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-----~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l 623 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-----EGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-L 623 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecC-----cchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-c
Confidence 445666677766664421 1 00 111 1234445667777777654 45566555 45677777777753 4
Q ss_pred cccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccCC-CCCCCcceEeeeecCCCcccccc
Q 001849 563 VSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTLTVE 640 (1005)
Q Consensus 563 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~ 640 (1005)
..++. ...+++|+.|++++|..++.+|.. ..+++|+.|++++|..+..+|.. ..+++|+.|++++|..++.+|..
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 44442 344677777777777666666642 55677777777777666666543 44567777777777766666521
Q ss_pred ccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhcccccCCCCCCccEEEEcCCCChhhHHHhccCCCCCceEE
Q 001849 641 EGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKIN 720 (1005)
Q Consensus 641 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 720 (1005)
. .+++|+.|.+.+|..++. ++ ..+++|++|++++|.+ +.+|..+ .+++|++|.
T Consensus 701 i----------~l~sL~~L~Lsgc~~L~~-~p--------------~~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 701 I----------NLKSLYRLNLSGCSRLKS-FP--------------DISTNISWLDLDETAI-EEFPSNL-RLENLDELI 753 (1153)
T ss_pred C----------CCCCCCEEeCCCCCCccc-cc--------------cccCCcCeeecCCCcc-ccccccc-ccccccccc
Confidence 1 122344444444433332 10 0123455555554432 2233222 234444444
Q ss_pred ecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccceeecccCCCCC
Q 001849 721 ISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALP 800 (1005)
Q Consensus 721 L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~ 800 (1005)
+.++.... ++..+..+ .+.....+++|+.|++++|+.++.+|..++++++|+.|++++|+.++
T Consensus 754 l~~~~~~~-l~~~~~~l----------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 754 LCEMKSEK-LWERVQPL----------------TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccccchhh-cccccccc----------------chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 44322110 00000000 00111123577777777777777777777777777777777777777
Q ss_pred cccCCCCCCccceEEecCchhhhhhhhhcCccccccCccceeeeeccCCCccccCCCCCCCCCCcccCCCCCcceeeecC
Q 001849 801 SLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEG 880 (1005)
Q Consensus 801 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 880 (1005)
.+|....+++|+.|++++|..+...+ ...++|+.|++++|. +..+|... ..+++|++|++++
T Consensus 817 ~LP~~~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n~--i~~iP~si---------~~l~~L~~L~L~~ 878 (1153)
T PLN03210 817 TLPTGINLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRTG--IEEVPWWI---------EKFSNLSFLDMNG 878 (1153)
T ss_pred eeCCCCCccccCEEECCCCCcccccc-------ccccccCEeECCCCC--CccChHHH---------hcCCCCCEEECCC
Confidence 77766566777777777777654322 224678888888874 55677655 3788999999999
Q ss_pred CCCCccccccccCCCCcCeEecCCCCCCCCCCCCCCccc--------------cceeeeccCcchHHhhcccCCCCcccc
Q 001849 881 FPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSS--------------LLQLSINRCPLIEEKCRKDGGQYWDLL 946 (1005)
Q Consensus 881 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~s--------------L~~L~i~~c~~l~~~~~~~~~~~~~~i 946 (1005)
|++++.+|..+..+++|+.+++++|++|+.++-...|.+ ...+.+.+|..|... .|..-
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~-------a~l~~ 951 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE-------ALLQQ 951 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch-------hhhcc
Confidence 999999998889999999999999999987754333322 233456667655421 11100
Q ss_pred CccceeEeCCEEEeecCcceeeeceeeeeecCcccc
Q 001849 947 THIPRVEISDVEMSVDGREVREVREVREVQRGWRTI 982 (1005)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 982 (1005)
+ ..-..+..+|.++|+||.+|+.+.+..++
T Consensus 952 ~------~~~~~~~l~g~evp~~f~hr~~g~sl~~i 981 (1153)
T PLN03210 952 Q------SIFKQLILSGEEVPSYFTHRTTGASLTNI 981 (1153)
T ss_pred c------ccceEEECCCccCchhccCCcccceeeee
Confidence 0 01123455799999999999987666433
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=4e-29 Score=275.91 Aligned_cols=262 Identities=23% Similarity=0.309 Sum_probs=167.6
Q ss_pred ccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEE
Q 001849 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (1005)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 603 (1005)
.+|++++++++. ...+|+++..+.+|+.+...+|.. ..+|. ....++|+.|.+..| .++.+|... ..+.+|+.|
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcc--cccceeeee
Confidence 556666666644 344556666666666666666543 33332 333456666666666 455555443 456666666
Q ss_pred EEeCCCCCCcccCCCCC---CCcceEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhh
Q 001849 604 EISGCDSLTYIAGVQLP---PSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATL 680 (1005)
Q Consensus 604 ~l~~~~~l~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 680 (1005)
++..| .+.++|...+. .+|+.+..+.+ .+..++. +....
T Consensus 316 dL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~-------------------------------~~e~~----- 357 (1081)
T KOG0618|consen 316 DLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPS-------------------------------YEENN----- 357 (1081)
T ss_pred eehhc-cccccchHHHhhhhHHHHHHhhhhc-ccccccc-------------------------------ccchh-----
Confidence 66665 44444432110 11222222221 1111110 00111
Q ss_pred cccccCCCCCCccEEEEcCCCChhhHHHhccCCCCCceEEecCCCCccccc-ccccCCCCccEEEeccCCCcccCCCCCC
Q 001849 681 ESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGL 759 (1005)
Q Consensus 681 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 759 (1005)
.+.|+.|++.+|...+...+.+.+.++|+.|+|++|.+ +.+| ..+.++..|++|+||+| +++.+|....
T Consensus 358 --------~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva 427 (1081)
T KOG0618|consen 358 --------HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGN-KLTTLPDTVA 427 (1081)
T ss_pred --------hHHHHHHHHhcCcccccchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccc-hhhhhhHHHH
Confidence 25799999999999998888999999999999998754 4445 45688999999999999 7999999899
Q ss_pred CcccccccccccccccccCccccCCCcccceeecccCCCCCccc-CCCCC-CccceEEecCchhhhhhhhhcCccccccC
Q 001849 760 PCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLE-EDGLP-TNLHVLLINGNMEIWKSMIERGRGFHRFS 837 (1005)
Q Consensus 760 ~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 837 (1005)
.++.|++|...+|. +..+| .+..+++|+.+|++.| .++.+- ....+ ++|++||++||......- ..|..+.
T Consensus 428 ~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~----~~l~~l~ 500 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDH----KTLKVLK 500 (1081)
T ss_pred hhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccch----hhhHHhh
Confidence 99999999999988 66778 7889999999999975 443322 22444 899999999998533211 2344445
Q ss_pred ccceeeeec
Q 001849 838 SLRQLTIMN 846 (1005)
Q Consensus 838 ~L~~L~l~~ 846 (1005)
++...++.-
T Consensus 501 ~l~~~~i~~ 509 (1081)
T KOG0618|consen 501 SLSQMDITL 509 (1081)
T ss_pred hhhheeccc
Confidence 554444443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-29 Score=253.40 Aligned_cols=421 Identities=19% Similarity=0.240 Sum_probs=236.5
Q ss_pred ceeEEecccccCCCCCCCCcccccccccCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccce
Q 001849 60 HLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139 (1005)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~ 139 (1005)
.+..+++.++. ...+.+++-.+..|.||++++|++.++|.+++.+..++.|+.++|++.++|+.++.+.+|+.
T Consensus 46 ~l~~lils~N~-------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 46 DLQKLILSHND-------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred chhhhhhccCc-------hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 35556665543 34455666689999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccchhhhcccCCCCEEEccCCcccccccccCCcccccccceeeEecccCCCCcccccccccccceeEEecc
Q 001849 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNL 219 (1005)
Q Consensus 140 L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l 219 (1005)
|+.++ +...++|++|+.+..|+.|+..+|+ +.++|.+++.+.+|..|....+.
T Consensus 119 l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~------------------------- 171 (565)
T KOG0472|consen 119 LDCSS-NELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK------------------------- 171 (565)
T ss_pred hhccc-cceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-------------------------
Confidence 99999 5688999999999999999999998 89999999998888877432210
Q ss_pred ccccchhhhhhhhhcCCCCCceEEEEeecCCCCCchhhhHhcccCCCCCCCCcceeEEeccCCCCCCccccCCCCCCccE
Q 001849 220 ENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVT 299 (1005)
Q Consensus 220 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 299 (1005)
..+.++..-.++.| ++++...|..+.+|..++ .+.+|..
T Consensus 172 ------l~~l~~~~i~m~~L---------------------------------~~ld~~~N~L~tlP~~lg--~l~~L~~ 210 (565)
T KOG0472|consen 172 ------LKALPENHIAMKRL---------------------------------KHLDCNSNLLETLPPELG--GLESLEL 210 (565)
T ss_pred ------hhhCCHHHHHHHHH---------------------------------HhcccchhhhhcCChhhc--chhhhHH
Confidence 11111111113333 344444444566666665 5667777
Q ss_pred EEEecCCCCCCCCCCCCCCCCceEEEcCCCCceeeCccccCCCCCCCCCCcceEecCCCccccccccCCCCCCcccCCcc
Q 001849 300 LKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKL 379 (1005)
Q Consensus 300 L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 379 (1005)
|++..|+ ...+|.|+++..|++|++..| .++.++.+... .++++..|++++- ++++ .+++..-+.+|
T Consensus 211 LyL~~Nk-i~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~-----~L~~l~vLDLRdN-klke-----~Pde~clLrsL 277 (565)
T KOG0472|consen 211 LYLRRNK-IRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLK-----HLNSLLVLDLRDN-KLKE-----VPDEICLLRSL 277 (565)
T ss_pred HHhhhcc-cccCCCCCccHHHHHHHhccc-HHHhhHHHHhc-----ccccceeeecccc-cccc-----CchHHHHhhhh
Confidence 7777766 345567777777777776544 34444433211 1444444444432 1111 11223455666
Q ss_pred cEEeeccCccccccCCCCCCCccEEEEccccCccccCCCCCcceEEEEccCCCceeeccccCCCCCCcc-eeccCCcccc
Q 001849 380 RELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSV-VCRDTSNQVF 458 (1005)
Q Consensus 380 ~~L~l~~c~~l~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 458 (1005)
++||+++ +.++ .+|.. ++++ .|+.|.+.|++.-+.....-.-+.+..+ +.++...
T Consensus 278 ~rLDlSN-N~is-~Lp~s------------------Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~--- 333 (565)
T KOG0472|consen 278 ERLDLSN-NDIS-SLPYS------------------LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK--- 333 (565)
T ss_pred hhhcccC-Cccc-cCCcc------------------cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc---
Confidence 6666666 3554 55533 3333 4444444444433211110000000000 0000000
Q ss_pred ccCCCCCCCCCccEEEecccccceeecccCCccccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCc
Q 001849 459 LAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGL 538 (1005)
Q Consensus 459 ~~~~~~~~~~~L~~L~L~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l 538 (1005)
-+|.....-.+-... +.. .........+.+.+.|++++ .+++.+|.+.|...-. .-....+++.|. +
T Consensus 334 ~dglS~se~~~e~~~-------t~~-~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~---~~Vt~VnfskNq-L 400 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAM-------TLP-SESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKS---EIVTSVNFSKNQ-L 400 (565)
T ss_pred cCCCCCCcccccccC-------CCC-CCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhh---cceEEEecccch-H
Confidence 000000000000000 000 00111224456677777777 7788888777644321 236677888865 4
Q ss_pred cccCcccCCCCCccEEEEcCCCCccccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCC
Q 001849 539 VKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGC 608 (1005)
Q Consensus 539 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 608 (1005)
..+|..+..+..+.+.-+..++.+.-+|. ...+++|..|++++| .+..+|..+ ..+..|+.|+++.|
T Consensus 401 ~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 401 CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSFN 468 (565)
T ss_pred hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhh--hhhhhhheeccccc
Confidence 56676665555554443333333333331 233555666666555 455555544 34444555555554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-26 Score=240.65 Aligned_cols=360 Identities=18% Similarity=0.197 Sum_probs=251.2
Q ss_pred ccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccC--CCCCCCCC
Q 001849 497 LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP--EVALPSKL 574 (1005)
Q Consensus 497 L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L 574 (1005)
-+.|++++ +++.++.... +..+ ++|+.+++.+|. ++.+|...+...+|+.|+|.+| .+.++. .+...+.|
T Consensus 80 t~~Ldlsn-Nkl~~id~~~----f~nl-~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 80 TQTLDLSN-NKLSHIDFEF----FYNL-PNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPAL 151 (873)
T ss_pred eeeeeccc-cccccCcHHH----HhcC-Ccceeeeeccch-hhhcccccccccceeEEeeecc-ccccccHHHHHhHhhh
Confidence 44577777 6676665543 2233 777777777643 5666665555556777777775 344443 24456677
Q ss_pred cEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccCC--CCCCCcceEeeeecCCCccccccccccccCCCCCC
Q 001849 575 KKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYT 652 (1005)
Q Consensus 575 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 652 (1005)
+.||++.| .+..++...| ..-.++++|++++| .++.+... ..+.+|-.|.++++. ++.+|
T Consensus 152 rslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr-ittLp-------------- 213 (873)
T KOG4194|consen 152 RSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR-ITTLP-------------- 213 (873)
T ss_pred hhhhhhhc-hhhcccCCCC-CCCCCceEEeeccc-cccccccccccccchheeeecccCc-ccccC--------------
Confidence 77777776 4555554333 33356777777776 33333332 223456666666542 33333
Q ss_pred CCCcceEEEccCCCCcccccCCCcchhhcccccCCCCCCccEEEEcCCCChhhHHHhccCCCCCceEEecCCCCcccccc
Q 001849 653 SSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPS 732 (1005)
Q Consensus 653 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 732 (1005)
.-.|..+ +.|+.|+|..|.+-..-.-.|+++++|+.|.+..|++...-.+
T Consensus 214 -----------------------------~r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 214 -----------------------------QRSFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred -----------------------------HHHhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 1122333 6799999998876655466799999999999999888776667
Q ss_pred cccCCCCccEEEeccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccceeecccCCCCCcccCCC--CCCc
Q 001849 733 GLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDG--LPTN 810 (1005)
Q Consensus 733 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~ 810 (1005)
.|..+.++++|+|+.|+....-..+.+.+++|+.|++++|.+...-++++..+++|++|++++ +.++.++++. -.+.
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQ 342 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHH
Confidence 788899999999999954444444577899999999999998777788888999999999998 5777887763 3588
Q ss_pred cceEEecCchhhhhhhhhcCccccccCccceeeeeccCCCccccCCCCCCCCCCcccCCCCCcceeeecCCCCCccccc-
Q 001849 811 LHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS- 889 (1005)
Q Consensus 811 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 889 (1005)
|++|.++.|......- ..|..+.+|+.|||++|. +...-++. ..+|..+++|+.|++.+ +++++||.
T Consensus 343 Le~LnLs~Nsi~~l~e----~af~~lssL~~LdLr~N~--ls~~IEDa-----a~~f~gl~~LrkL~l~g-Nqlk~I~kr 410 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAE----GAFVGLSSLHKLDLRSNE--LSWCIEDA-----AVAFNGLPSLRKLRLTG-NQLKSIPKR 410 (873)
T ss_pred hhhhcccccchHHHHh----hHHHHhhhhhhhcCcCCe--EEEEEecc-----hhhhccchhhhheeecC-ceeeecchh
Confidence 9999999998655433 578899999999999974 33222221 23456789999999999 68999986
Q ss_pred cccCCCCcCeEecCCCCCCCCCCCCCC-ccccceeeec
Q 001849 890 SIVDLQNLTGLVLGNCPKLKYFPEKGL-PSSLLQLSIN 926 (1005)
Q Consensus 890 ~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~sL~~L~i~ 926 (1005)
.+.+|++|++|++.++ .+.+|-+.+| +..|++|.+.
T Consensus 411 Afsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence 5789999999999994 5888877666 4578887755
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=7.4e-26 Score=236.90 Aligned_cols=359 Identities=19% Similarity=0.190 Sum_probs=201.2
Q ss_pred ccEEEecCCCCccc-CccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccc-hhhhcccCCCCEEEccC
Q 001849 91 LRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKL-CADMGNLVKLHHLKNSN 168 (1005)
Q Consensus 91 Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~ 168 (1005)
-+.||+++|.+..+ +..|.++++|+.+++.+|.++.||...+...+|+.|+|.+| .+.++ .+++..+..||.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh
Confidence 34455665555554 34455555666666665555555555455555555666553 23332 23455555555555555
Q ss_pred CcccccccccCCcccccccceeeEecccCCCCcccccccccccceeEEeccccccchhhhhhhhhcCCCCCceEEEEeec
Q 001849 169 TKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTL 248 (1005)
Q Consensus 169 n~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 248 (1005)
|. +.++|.. .+....++++|+++.|.
T Consensus 159 N~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 159 NL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLASNR 184 (873)
T ss_pred ch-hhcccCC-----------------------------------------------------CCCCCCCceEEeecccc
Confidence 54 4444321 24444567777777666
Q ss_pred CCCCCchhhhHhcccCCCCCCCCcceeEEeccCCCCCCccccCCCCCCccEEEEecCCCCCC-CCCCCCCCCCceEEEcC
Q 001849 249 YGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTA-LPSVGQLPSLKHLTVRG 327 (1005)
Q Consensus 249 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~ 327 (1005)
++.... ..|..+.+|..|.++.|..+.+|...+. .+++|+.|+|..|.+... .-.|.++++|+.|.+..
T Consensus 185 It~l~~---------~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 185 ITTLET---------GHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred cccccc---------ccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence 443322 3444556788888888888888877764 588888888888875433 22677888888888888
Q ss_pred CCCceeeCccccCCCCCCCCCCcceEecCCCccccccccCCCCCCcccCCcccEEeeccCccccccCC----CCCCCccE
Q 001849 328 MSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFP----EHLPALEM 403 (1005)
Q Consensus 328 ~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~ 403 (1005)
|+.-+--...|++ +.+++.|++..-. +...-.+ ....+..|+.|++++ +.+. .|. ++.++|++
T Consensus 255 N~I~kL~DG~Fy~------l~kme~l~L~~N~-l~~vn~g----~lfgLt~L~~L~lS~-NaI~-rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 255 NDISKLDDGAFYG------LEKMEHLNLETNR-LQAVNEG----WLFGLTSLEQLDLSY-NAIQ-RIHIDSWSFTQKLKE 321 (873)
T ss_pred cCcccccCcceee------ecccceeecccch-hhhhhcc----cccccchhhhhccch-hhhh-eeecchhhhccccee
Confidence 8654444444554 6677777776521 2111111 124567777777777 3443 221 34455666
Q ss_pred EEEccccCcc---ccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCccEEEeccccc
Q 001849 404 LVIEGCEELL---VSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQ 480 (1005)
Q Consensus 404 L~l~~c~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~ 480 (1005)
|+++++.... ..+..+..|+.|.+++|.... +....+..+++|++|+|.+|.+
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~------------------------l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH------------------------LAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHH------------------------HHhhHHHHhhhhhhhcCcCCeE
Confidence 6666554332 133345555555555554322 1112334556666666666666
Q ss_pred ceeecccCCccccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCccccCcccCCCCCccEEEEcC
Q 001849 481 TYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYG 558 (1005)
Q Consensus 481 ~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~ 558 (1005)
..........|..+++|+.|.+.+ ++++.++..+| .++ ++|++|||.+|..-..-|.+|..+ .|++|.+..
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAf----sgl-~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF----SGL-EALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EEEEecchhhhccchhhhheeecC-ceeeecchhhh----ccC-cccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 665555555556666666666666 55665555442 222 555555555555554445555555 555555443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-26 Score=256.06 Aligned_cols=462 Identities=23% Similarity=0.264 Sum_probs=282.6
Q ss_pred cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCEEEc
Q 001849 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN 166 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (1005)
+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|.|.+ +.+..+|.++..+++|++||+
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccccc
Confidence 4444888888888888888888888888888888888888888888888888888886 667888888888888888888
Q ss_pred cCCcccccccccCCcccccccceeeEecccCCCCcccccccccccceeEEeccccccchhhhhhhhhcCCCCCceEEEEe
Q 001849 167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW 246 (1005)
Q Consensus 167 ~~n~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 246 (1005)
++|. .+.+|.-+..++.+.++...+
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~------------------------------------------------------ 146 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASN------------------------------------------------------ 146 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhc------------------------------------------------------
Confidence 8887 777776666665554442110
Q ss_pred ecCCCCCchhhhHhcccCCCCCCCCcceeEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceEEE
Q 001849 247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTV 325 (1005)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 325 (1005)
|- ...+++ -..++.+++..+.+...++ ....+.. .|+|
T Consensus 147 N~--------------------------------~~~~lg-------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 147 NE--------------------------------KIQRLG-------QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred ch--------------------------------hhhhhc-------cccchhhhhhhhhcccchhcchhhhhe--eeec
Confidence 00 000000 0115566666666555554 4444444 5777
Q ss_pred cCCCCceeeCccccCCCCCCCCCCcceEecCCCccccccccCCCCCCcccCCcccEEeeccCccccccCCCCCCCccEEE
Q 001849 326 RGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLV 405 (1005)
Q Consensus 326 ~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~ 405 (1005)
.+|... ... ...+++|+.|.... +++. .+--.-
T Consensus 186 r~N~~~-~~d-------------------------------------ls~~~~l~~l~c~r-n~ls-~l~~~g------- 218 (1081)
T KOG0618|consen 186 RYNEME-VLD-------------------------------------LSNLANLEVLHCER-NQLS-ELEISG------- 218 (1081)
T ss_pred ccchhh-hhh-------------------------------------hhhccchhhhhhhh-cccc-eEEecC-------
Confidence 777432 111 11222233222222 1221 111111
Q ss_pred EccccCccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCccEEEecccccceeec
Q 001849 406 IEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWK 485 (1005)
Q Consensus 406 l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~i~~ 485 (1005)
++++.|+...|...+.... ..-.+|+.++++.|++..+
T Consensus 219 --------------~~l~~L~a~~n~l~~~~~~--------------------------p~p~nl~~~dis~n~l~~l-- 256 (1081)
T KOG0618|consen 219 --------------PSLTALYADHNPLTTLDVH--------------------------PVPLNLQYLDISHNNLSNL-- 256 (1081)
T ss_pred --------------cchheeeeccCcceeeccc--------------------------cccccceeeecchhhhhcc--
Confidence 2223333333332211111 1234678888888887776
Q ss_pred ccCCccccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCccccCcccCCCCCccEEEEcCCCCcccc
Q 001849 486 SHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSF 565 (1005)
Q Consensus 486 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~ 565 (1005)
+ .+...+.+|+.+.+.+ +.+..++..-+ .. .+|+.|.+..|. +..+|....++.+|++|++..| .+..+
T Consensus 257 -p-~wi~~~~nle~l~~n~-N~l~~lp~ri~-----~~-~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N-~L~~l 325 (1081)
T KOG0618|consen 257 -P-EWIGACANLEALNANH-NRLVALPLRIS-----RI-TSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN-NLPSL 325 (1081)
T ss_pred -h-HHHHhcccceEecccc-hhHHhhHHHHh-----hh-hhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc-ccccc
Confidence 2 6677888899888888 67766655432 22 778888888865 5677777888999999999996 56677
Q ss_pred CCCCC---CCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCc-ccCCCCCCCcceEeeeecCCCccccccc
Q 001849 566 PEVAL---PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY-IAGVQLPPSLKRLKICHCDNIRTLTVEE 641 (1005)
Q Consensus 566 ~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 641 (1005)
|+... ..+|..|+.+.+ .+...|..- ...++.|+.|++.+|..... +|.......||.|+++++. +.++|..
T Consensus 326 p~~~l~v~~~~l~~ln~s~n-~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas- 401 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSN-KLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPAS- 401 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhc-ccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHH-
Confidence 75222 234677777766 445554221 15567888888888843322 4444566778888888763 3333311
Q ss_pred cccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhcccccCCCCCCccEEEEcCCCChhhHHHhccCCCCCceEEe
Q 001849 642 GIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINI 721 (1005)
Q Consensus 642 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 721 (1005)
.+.++ ..|++|+|++| .+..+|..+..+..|++|..
T Consensus 402 ------------------------------------------~~~kl-e~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 402 ------------------------------------------KLRKL-EELEELNLSGN-KLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred ------------------------------------------HHhch-HHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh
Confidence 01111 46888888887 46667778888888888888
Q ss_pred cCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccceeeccc
Q 001849 722 SGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGK 795 (1005)
Q Consensus 722 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~ 795 (1005)
.+|.+. ..| .+..++.|+.+|++.|......-....+.++|++||++||..+..--..+..+..+...++.-
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 775544 456 677788888888888743322222233447888888888875433333444444554444443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=5.3e-25 Score=231.74 Aligned_cols=365 Identities=18% Similarity=0.204 Sum_probs=220.3
Q ss_pred CCCccEEEecccccceeecccCCccccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCccccCcccC
Q 001849 467 LPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSL 546 (1005)
Q Consensus 467 ~~~L~~L~L~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~ 546 (1005)
++-.+-+++++|.+++-. .+.....++++++|.+.+ .++..+|.+ +..+ .+|++|.+++|+ +..+...+.
T Consensus 6 LpFVrGvDfsgNDFsg~~--FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l-qkLEHLs~~HN~-L~~vhGELs 75 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDR--FPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL-QKLEHLSMAHNQ-LISVHGELS 75 (1255)
T ss_pred cceeecccccCCcCCCCc--CchhHHHhhheeEEEech-hhhhhChHH-----HHHH-hhhhhhhhhhhh-hHhhhhhhc
Confidence 445566778888776431 234456688888888888 677777665 4444 788888888865 445555677
Q ss_pred CCCCccEEEEcCCCCcc-ccC-CCCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccCCCCCCCcc
Q 001849 547 SLSSLREIEIYGCRSLV-SFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLK 624 (1005)
Q Consensus 547 ~l~~L~~L~l~~~~~l~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 624 (1005)
.+|+|+.+.+.+|+.-. .+| +...+..|..|+++.| .++..|... ....++-.|++++| .+..+|..- +.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~L--E~AKn~iVLNLS~N-~IetIPn~l-fi--- 147 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNL--EYAKNSIVLNLSYN-NIETIPNSL-FI--- 147 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhh--hhhcCcEEEEcccC-ccccCCchH-HH---
Confidence 78888888888764322 233 3445677777788777 566677655 55566777777776 344443210 00
Q ss_pred eEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhcccccCCCCCCccEEEEcCCCChh
Q 001849 625 RLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLE 704 (1005)
Q Consensus 625 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~l~~~L~~L~l~~~~~~~ 704 (1005)
+| ..|-.|||++| .++
T Consensus 148 -----------------------------------------nL----------------------tDLLfLDLS~N-rLe 163 (1255)
T KOG0444|consen 148 -----------------------------------------NL----------------------TDLLFLDLSNN-RLE 163 (1255)
T ss_pred -----------------------------------------hh----------------------HhHhhhccccc-hhh
Confidence 01 23555566655 345
Q ss_pred hHHHhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCC-cccCCCCCCCcccccccccccccccccCccccC
Q 001849 705 SIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGN-LVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLH 783 (1005)
Q Consensus 705 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~ 783 (1005)
.+|+.+..+..|++|.|++|...-.--..+..+++|++|.+++.+. +..+|.+.-.+.+|..+|++.|. +..+|..+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHh
Confidence 5555666666666666666654322222333455566666665433 23355555555666666666665 555666666
Q ss_pred CCcccceeecccCCCCCcccCC-CCCCccceEEecCchhhhhhhhhcCccccccCccceeeeeccCCCccccCCCCCCCC
Q 001849 784 NLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKG 862 (1005)
Q Consensus 784 ~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 862 (1005)
++++|+.|++++ ++++.+... +...+|++|+++.|+....+ ..+..++.|+.|.+.+|....+.||.++|
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP-----~avcKL~kL~kLy~n~NkL~FeGiPSGIG--- 313 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLP-----DAVCKLTKLTKLYANNNKLTFEGIPSGIG--- 313 (1255)
T ss_pred hhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccch-----HHHhhhHHHHHHHhccCcccccCCccchh---
Confidence 666666666666 344444332 44456666666666654433 24566777777777777777777776665
Q ss_pred CCcccCCCCCcceeeecCCCCCccccccccCCCCcCeEecCCCCCCCCCCCC-CCccccceeeeccCcch
Q 001849 863 SGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEK-GLPSSLLQLSINRCPLI 931 (1005)
Q Consensus 863 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~l 931 (1005)
.+..|+.+...+ +.++-+|.+++.|..|++|.++. +.|..+|+. -+.+-|++||+..+|.|
T Consensus 314 ------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 314 ------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 566666666666 45666666666666777666654 556666654 23466666776666654
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=9.6e-25 Score=229.85 Aligned_cols=345 Identities=19% Similarity=0.281 Sum_probs=253.4
Q ss_pred CCCCccEEEecccccceeecccCCccccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCcc-ccCcc
Q 001849 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV-KLPQS 544 (1005)
Q Consensus 466 ~~~~L~~L~L~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~-~~~~~ 544 (1005)
.+++++.|.|...++..+ +.-++.+.+|++|.+.+ +++..+..+ +..+ +.|+.+.+.+|+... .+|..
T Consensus 30 qMt~~~WLkLnrt~L~~v----PeEL~~lqkLEHLs~~H-N~L~~vhGE-----Ls~L-p~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQV----PEELSRLQKLEHLSMAH-NQLISVHGE-----LSDL-PRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred HhhheeEEEechhhhhhC----hHHHHHHhhhhhhhhhh-hhhHhhhhh-----hccc-hhhHHHhhhccccccCCCCch
Confidence 578899999988766655 34467889999999999 677766543 4445 889999999987654 67888
Q ss_pred cCCCCCccEEEEcCCCCccccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccC-CCCCCC
Q 001849 545 SLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAG-VQLPPS 622 (1005)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~ 622 (1005)
+..+.-|..|++++| .++..|. +....++-.|++++| .++.+|...| .+++.|-.|++++| .+..+|. ...+..
T Consensus 99 iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lf-inLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLF-INLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccC-ccccCCchHH-HhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 899999999999997 5666764 556788999999998 6899998777 78899999999998 4555443 345567
Q ss_pred cceEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhcccccCCCCCCccEEEEcCCCC
Q 001849 623 LKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSK 702 (1005)
Q Consensus 623 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~l~~~L~~L~l~~~~~ 702 (1005)
|+.|.+++++ |....+...|++ ++|+.|++++-..
T Consensus 175 LqtL~Ls~NP-----------------------L~hfQLrQLPsm----------------------tsL~vLhms~TqR 209 (1255)
T KOG0444|consen 175 LQTLKLSNNP-----------------------LNHFQLRQLPSM----------------------TSLSVLHMSNTQR 209 (1255)
T ss_pred hhhhhcCCCh-----------------------hhHHHHhcCccc----------------------hhhhhhhcccccc
Confidence 8888888875 222223333333 3577777776544
Q ss_pred -hhhHHHhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCcccccccccccccccccCccc
Q 001849 703 -LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG 781 (1005)
Q Consensus 703 -~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~ 781 (1005)
+..+|.++..+.+|..+++|.|+ +..+|+.+.++++|+.|+||+| .++.+......+.+|++|+++.|+ ++.+|..
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a 286 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDA 286 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHH
Confidence 34577788888888888888644 5556888888888888888888 566666666667788888888887 7778888
Q ss_pred cCCCcccceeecccCC-CCCcccCC-CCCCccceEEecCchhhhhhhhhcCccccccCccceeeeeccCCCccccCCCCC
Q 001849 782 LHNLKSLQELRIGKGV-ALPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKAD 859 (1005)
Q Consensus 782 ~~~l~~L~~L~l~~~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 859 (1005)
+..++.|+.|.+.+|. ..+.+|.+ +...+|+++...+|....++ .++..++.|+.|.|+.| .+..+|+.+
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP-----EglcRC~kL~kL~L~~N--rLiTLPeaI- 358 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP-----EGLCRCVKLQKLKLDHN--RLITLPEAI- 358 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc-----hhhhhhHHHHHhccccc--ceeechhhh-
Confidence 8888888888887643 22455654 55666777777766654433 36778888888888877 577777766
Q ss_pred CCCCCcccCCCCCcceeeecCCCCCccccc
Q 001849 860 DKGSGTVLPLPASLTYLRIEGFPNLERLTS 889 (1005)
Q Consensus 860 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 889 (1005)
..++-|+.||++.|+++.--|.
T Consensus 359 --------HlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 359 --------HLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred --------hhcCCcceeeccCCcCccCCCC
Confidence 4778888888888887766554
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=3.2e-22 Score=236.22 Aligned_cols=184 Identities=28% Similarity=0.369 Sum_probs=141.3
Q ss_pred CchhHHHHHHHHhc-----cceEEEEccccc--ccccccCcceeEEEEEcCCCccccccccccCCCceeEEecccccCCC
Q 001849 1 MHDLVSDLAQWAAG-----EMYFTMEYTSEV--NKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSK 73 (1005)
Q Consensus 1 mHDlv~dla~~~s~-----~~~~~~~~~~~~--~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~ 73 (1005)
|||+|||||.|+|+ +|.+++....+. .....-+..+||+++.++.+... ..-..+++|+||.+..+..
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~-- 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD-- 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecch--
Confidence 99999999999999 666555543111 11222346899999999877543 2345677999999988642
Q ss_pred CCCCCcccccccc-cCCCccEEEecCCC-CcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccc
Q 001849 74 PGYLAPSMLPKLL-KLQSLRVFSLRGYR-ILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKL 151 (1005)
Q Consensus 74 ~~~~~~~~~~~~~-~l~~Lr~L~L~~~~-i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 151 (1005)
-...++..+| .++.||||||++|. +.++|++++.|.+||||+|+++.|..+|.++++|+.|.+||+.++.....+
T Consensus 558 ---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 558 ---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred ---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence 1456777888 99999999999876 789999999999999999999999999999999999999999997777777
Q ss_pred hhhhcccCCCCEEEccCCcccccccccCCcccccccceeeEe
Q 001849 152 CADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVV 193 (1005)
Q Consensus 152 p~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~L~~~~~ 193 (1005)
|..+..|.+||+|.+.... ...-...++.+.+|++|..+..
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 7777789999999997664 1111122555555555544444
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.4e-15 Score=174.17 Aligned_cols=92 Identities=29% Similarity=0.361 Sum_probs=58.8
Q ss_pred ccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccCCCCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEE
Q 001849 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (1005)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 604 (1005)
..-..|+++++. ++.+|..+. ++|+.|++.+| .++.+|. .+++|++|++++| .++.+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGN-QLTSLPV-----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCC-ccCcccC-----cccccceee
Confidence 456678888874 456776554 47888888885 4666664 3677888888877 4556653 235777777
Q ss_pred EeCCCCCCcccCCCCCCCcceEeeeec
Q 001849 605 ISGCDSLTYIAGVQLPPSLKRLKICHC 631 (1005)
Q Consensus 605 l~~~~~l~~~~~~~~~~~L~~L~l~~~ 631 (1005)
+++|. ++.++. .+.+|+.|++++|
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N 292 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFGN 292 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcCC
Confidence 77763 444442 3445555555554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=9.2e-17 Score=161.89 Aligned_cols=116 Identities=26% Similarity=0.284 Sum_probs=99.6
Q ss_pred Ccccccccc-cCCCccEEEecCCCCccc-CccccCCCCCcEEEccC-CCCcccChh-hhcccccceeccccccccccchh
Q 001849 78 APSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSG-TEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA 153 (1005)
Q Consensus 78 ~~~~~~~~~-~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~-n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~ 153 (1005)
...+|+..| .+++||+|||++|.|+.| |++|.++..|-.|-+.+ |+|+++|+. |++|..|+.|.+.-|...-...+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 678999999 999999999999999998 89999999988887777 899999965 99999999999988543344456
Q ss_pred hhcccCCCCEEEccCCccccccccc-CCcccccccceeeEec
Q 001849 154 DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVG 194 (1005)
Q Consensus 154 ~i~~L~~L~~L~l~~n~~~~~~p~~-i~~L~~L~~L~~~~~~ 194 (1005)
.+..|++|..|.+.+|. +..++.+ +..+.+++++++-...
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 79999999999999998 8888874 8999999998654443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=3.4e-17 Score=164.94 Aligned_cols=88 Identities=26% Similarity=0.263 Sum_probs=67.8
Q ss_pred CCCCCccEEEecccccceeecccCCccccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCccccCcc
Q 001849 465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS 544 (1005)
Q Consensus 465 ~~~~~L~~L~L~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~ 544 (1005)
..+++|+.|++++|+++.| ..++|.....++.|.+.+ ++++.+....| .++ ..|+.|+|.+|++....|.+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i---~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f----~~l-s~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRI---EDGAFEGAAELQELYLTR-NKLEFVSSGMF----QGL-SGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred hhcccceEeccCCCccchh---hhhhhcchhhhhhhhcCc-chHHHHHHHhh----hcc-ccceeeeecCCeeEEEeccc
Confidence 4567777888888777776 356677888888888888 77777665543 333 88889999998888888888
Q ss_pred cCCCCCccEEEEcCCCC
Q 001849 545 SLSLSSLREIEIYGCRS 561 (1005)
Q Consensus 545 ~~~l~~L~~L~l~~~~~ 561 (1005)
|..+.+|.+|.+-.|+.
T Consensus 342 F~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccceeeeeehccCcc
Confidence 88999999998887654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=6e-15 Score=170.85 Aligned_cols=110 Identities=31% Similarity=0.371 Sum_probs=51.8
Q ss_pred ccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccCCCCCCCCCcE
Q 001849 497 LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKK 576 (1005)
Q Consensus 497 L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 576 (1005)
-..|+++++ .++.+|..- +++|+.|++.+|. ++.+|. .+++|++|++++| .++.+|. .+++|+.
T Consensus 203 ~~~LdLs~~-~LtsLP~~l--------~~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~ 266 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCL--------PAHITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLE 266 (788)
T ss_pred CcEEEcCCC-CCCcCCcch--------hcCCCEEEccCCc-CCCCCC---CCCCCcEEEecCC-ccCcccC--cccccce
Confidence 445555552 555554421 2455666666543 333443 2355666666554 3444442 2455666
Q ss_pred EEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccCCCCCCCcceEeeeec
Q 001849 577 IEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHC 631 (1005)
Q Consensus 577 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 631 (1005)
|++++|. +..+|.. ..+|+.|++++| .++.+|. .+++|+.|++++|
T Consensus 267 L~Ls~N~-L~~Lp~l-----p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N 312 (788)
T PRK15387 267 LSIFSNP-LTHLPAL-----PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN 312 (788)
T ss_pred eeccCCc-hhhhhhc-----hhhcCEEECcCC-ccccccc--cccccceeECCCC
Confidence 6666553 3344421 244555666555 3333332 2334444444443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3.3e-16 Score=139.06 Aligned_cols=130 Identities=25% Similarity=0.352 Sum_probs=103.7
Q ss_pred ccccCCCceeEEecccccCCCCCCCCcccccccccCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhh
Q 001849 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS 132 (1005)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~ 132 (1005)
+.+.+++++..|.+.++. ...+||.+..+++|++|++.+|+|+++|.+++.++.||.|+++-|++..+|..|+
T Consensus 27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 344456666666666554 4667888888888888888888888888888888888888888888888888888
Q ss_pred cccccceecccccccc-ccchhhhcccCCCCEEEccCCcccccccccCCccccccccee
Q 001849 133 KLYNLHSLLLEDCDRL-EKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCS 190 (1005)
Q Consensus 133 ~L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~L~~ 190 (1005)
.++.|++|||.+|+.. ..+|..|..|..|+-|++++|. ...+|.++++|++||.|.+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 8888888888886643 4678888888888888888887 7888888888888887743
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.2e-13 Score=161.36 Aligned_cols=74 Identities=22% Similarity=0.414 Sum_probs=44.0
Q ss_pred CCccEEEEcCCCCccccCCCCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccCCCCCCCcceEee
Q 001849 549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKI 628 (1005)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 628 (1005)
.+...|+++++ .++.+|.. .++.|+.|++++| .+..+|... .++|+.|++++| .++.+|. ..+++|+.|++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP~~l----~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNN-ELKSLPENL----QGNIKTLYANSN-QLTSIPA-TLPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCC-CCCcCChhh----ccCCCEEECCCC-ccccCCh-hhhccccEEEC
Confidence 34577888875 56667642 3567888888887 466777643 257778887776 3444432 12233444444
Q ss_pred eec
Q 001849 629 CHC 631 (1005)
Q Consensus 629 ~~~ 631 (1005)
++|
T Consensus 249 s~N 251 (754)
T PRK15370 249 SIN 251 (754)
T ss_pred cCC
Confidence 433
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.45 E-value=1.3e-13 Score=163.65 Aligned_cols=261 Identities=24% Similarity=0.266 Sum_probs=172.5
Q ss_pred ccccCCCceeEEecccccCCCCCCCCcccccccccCCCccEEEecCCC--CcccCc-cccCCCCCcEEEccCC-CCcccC
Q 001849 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYR--ILELPD-SVGDLRYLRYLNLSGT-EIRTLP 128 (1005)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~lp~-~~~~L~~L~~L~Ls~n-~i~~lp 128 (1005)
+.......+|...+..+. ......-...+.|++|-+.+|. +..++. .|..++.|++|||++| .+.++|
T Consensus 517 ~~~~~~~~~rr~s~~~~~--------~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNK--------IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccchhheeEEEEeccc--------hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 344556677877766543 1222222355589999999997 777764 4788999999999988 478999
Q ss_pred hhhhcccccceeccccccccccchhhhcccCCCCEEEccCCcccccccccCCcccccccceeeEec-ccCCCCccccccc
Q 001849 129 ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVG-KDSGSGLRELKLL 207 (1005)
Q Consensus 129 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L 207 (1005)
++|+.|.+||+|++++ ..+..+|.++++|++|.+||+..+.....+|.....|++||+|.++... ..+...+.++.+|
T Consensus 589 ~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL 667 (889)
T ss_pred hHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence 9999999999999999 6789999999999999999999988666666667779999999887765 3345666677777
Q ss_pred ccccceeEEeccccccchhhhhhhhhcCCCCCceEEEEeecCCCCCchhhhHhcccCCCCCCCCcceeEEeccCCCCCCc
Q 001849 208 TQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPT 287 (1005)
Q Consensus 208 ~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 287 (1005)
..|+ .+.+..... .....+..+..|..+...-.. ...........+..+.+|+.|.+.++.+.....
T Consensus 668 e~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 668 EHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSI------EGCSKRTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred cchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhh------cccccceeecccccccCcceEEEEcCCCchhhc
Confidence 6666 444432111 001112222222221111000 001112233455667788888888887654332
Q ss_pred -cccC---CC-CCCccEEEEecCCCCCCCCCCCCCCCCceEEEcCCCCceeeC
Q 001849 288 -WLGD---SS-FSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLG 335 (1005)
Q Consensus 288 -~~~~---~~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~ 335 (1005)
|... .. |+++..+.+.+|.....+.+....|+|+.|++..|..++.+.
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 2211 11 456666667777766666666677888888888887776654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=3.7e-15 Score=132.46 Aligned_cols=146 Identities=23% Similarity=0.337 Sum_probs=131.6
Q ss_pred cceeEEEEEcCCCccccccccccCCCceeEEecccccCCCCCCCCcccccccccCCCccEEEecCCCCcccCccccCCCC
Q 001849 34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRY 113 (1005)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~ 113 (1005)
+.++++.+..+....+ .+.+.++.+|..|.++++. ..++|.++..+++||.|+++-|++..+|..|+.++.
T Consensus 33 s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 4677888888876554 4778889999999887764 678899999999999999999999999999999999
Q ss_pred CcEEEccCCCCc--ccChhhhcccccceeccccccccccchhhhcccCCCCEEEccCCcccccccccCCccccccccee
Q 001849 114 LRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCS 190 (1005)
Q Consensus 114 L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~L~~ 190 (1005)
|++|||.+|++. .+|..|..++.|+.|.|++ +..+.+|..+++|++|+.|.+..|. +-++|.++|.|+.|++|++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 999999999987 6899999999999999999 5799999999999999999999999 8899999999999999964
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.4e-13 Score=159.06 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=66.8
Q ss_pred CCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCEEEccC
Q 001849 89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN 168 (1005)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 168 (1005)
.+..+|+++++.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 467889999999999987664 579999999999999997665 58999999985 5778887664 4789999999
Q ss_pred CcccccccccC
Q 001849 169 TKSLEEMPVGI 179 (1005)
Q Consensus 169 n~~~~~~p~~i 179 (1005)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 98 66777544
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=5.5e-12 Score=137.93 Aligned_cols=60 Identities=25% Similarity=0.431 Sum_probs=35.7
Q ss_pred CCccEEEEcCCCChh----hHHHhccCCCCCceEEecCCCCccc----ccccccCCCCccEEEeccCC
Q 001849 690 PSLKLLLVWGCSKLE----SIAEMLDNNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCG 749 (1005)
Q Consensus 690 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~~~ 749 (1005)
++|++|++++|.... .+...+..+++|++|++++|.+.+. ++..+..+++|++|++++|.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 467777777776552 2344556666777777777665532 23334445667777777663
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=3.4e-12 Score=139.55 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCccEEEEcCCCChhhHHHhccCCCC---CceEEecCCCCcc----cccccccCC-CCccEEEeccCC
Q 001849 690 PSLKLLLVWGCSKLESIAEMLDNNTS---LEKINISGCGNLQ----TLPSGLHNL-CQLQEISIASCG 749 (1005)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~L~~n~~~~----~~~~~l~~l-~~L~~L~l~~~~ 749 (1005)
++|++|++++|......+..+..+.. |++|++++|.... .+...+..+ ++|++|++++|.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 45666666666555444433333333 6666666655442 112233344 555555555553
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.7e-10 Score=106.36 Aligned_cols=131 Identities=25% Similarity=0.268 Sum_probs=55.5
Q ss_pred ccccCCCceeEEecccccCCCCCCCCcccccccc-cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhh
Q 001849 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV 131 (1005)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i 131 (1005)
+.+.++.++|.|.+.++. ...+..+. .+.+|++|||++|.|+.++ .+..++.|++|++++|+|+.+++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 344566678888777653 33345666 7899999999999999984 6888999999999999999997666
Q ss_pred -hcccccceeccccccccccch--hhhcccCCCCEEEccCCcccccccc----cCCcccccccceeeEec
Q 001849 132 -SKLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPV----GIGRLTCLQTLCSFVVG 194 (1005)
Q Consensus 132 -~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~~p~----~i~~L~~L~~L~~~~~~ 194 (1005)
..+++|++|++++| .+..+- ..++.+++|++|++.+|+ +...+. -+..+++|+.|+...+.
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 47999999999995 454443 457889999999999998 554443 26788889988765544
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=4.8e-11 Score=122.38 Aligned_cols=257 Identities=16% Similarity=0.267 Sum_probs=135.4
Q ss_pred CCCCCccEEEEcCCCCccccCC---CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccCC---CC
Q 001849 546 LSLSSLREIEIYGCRSLVSFPE---VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV---QL 619 (1005)
Q Consensus 546 ~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~ 619 (1005)
..+|++++|.+.+|.++++..- ..++++|++|++..|..++..........+++|++|++++|+.+..-... ..
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 3456666666666665543321 22356666666666666665544434467788888888887666551110 12
Q ss_pred CCCcceEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhcccccCCCCCCccEEEEcC
Q 001849 620 PPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWG 699 (1005)
Q Consensus 620 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~l~~~L~~L~l~~ 699 (1005)
+..++.+...+|..++.-. +...+.. ...+.++++.+
T Consensus 241 ~~~l~~~~~kGC~e~~le~-----------------------------------------l~~~~~~--~~~i~~lnl~~ 277 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEA-----------------------------------------LLKAAAY--CLEILKLNLQH 277 (483)
T ss_pred chhhhhhhhcccccccHHH-----------------------------------------HHHHhcc--ChHhhccchhh
Confidence 2234444444444332100 0000000 12344555555
Q ss_pred CCChhh--HHHhccCCCCCceEEecCCCCccccc--ccccCCCCccEEEeccCCCcccCCCC--CCCccccccccccccc
Q 001849 700 CSKLES--IAEMLDNNTSLEKINISGCGNLQTLP--SGLHNLCQLQEISIASCGNLVSSPEG--GLPCAKLAMLAIYNCK 773 (1005)
Q Consensus 700 ~~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~~~ 773 (1005)
|..+.. +...-.++..|++|+.++|...++.+ .--++.++|+.|.++.|+.++..... ..+++.|+.+++.+|.
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 544432 23444556666777777666654432 11235667777777777655443322 2346677777777765
Q ss_pred cccc--CccccCCCcccceeecccCCCCCcc-----cCC-CCCCccceEEecCchhhhhhhhhcCccccccCccceeeee
Q 001849 774 RLEA--LPKGLHNLKSLQELRIGKGVALPSL-----EED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM 845 (1005)
Q Consensus 774 ~l~~--~p~~~~~l~~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 845 (1005)
.... +-+.-.+++.|+.|.+++|..+++. ... .....|..+.+++|+.+.....+ .+..+++|+.+++-
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le---~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE---HLSICRNLERIELI 434 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH---HHhhCcccceeeee
Confidence 3321 1122246677777777777655443 111 22355667777777766655442 46666777777777
Q ss_pred ccC
Q 001849 846 NCD 848 (1005)
Q Consensus 846 ~~~ 848 (1005)
+|.
T Consensus 435 ~~q 437 (483)
T KOG4341|consen 435 DCQ 437 (483)
T ss_pred chh
Confidence 653
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.86 E-value=5.6e-11 Score=121.84 Aligned_cols=139 Identities=19% Similarity=0.312 Sum_probs=58.3
Q ss_pred ccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCccc--cCcccCCCCCccEEEEcCCCCccccC---
Q 001849 492 QDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYGCRSLVSFP--- 566 (1005)
Q Consensus 492 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~~--- 566 (1005)
..+++|++|++..|..+++..... +..-|++|++|+++.|+.... +.....++..++.+.+.+|...+.-.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~----la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKY----LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHH----HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH
Confidence 345555555555555555433321 222235555555555554432 11222334444444444443322100
Q ss_pred CCCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccCC---CCCCCcceEeeeecCCC
Q 001849 567 EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNI 634 (1005)
Q Consensus 567 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l 634 (1005)
..+....+.++++..|..++.......+..+..|+.|..++|..+++.+.+ ...++|+.+.+..|+.+
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 012233344444445544444332222234455555555555444332211 33344444444444443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=4.1e-10 Score=119.93 Aligned_cols=104 Identities=28% Similarity=0.491 Sum_probs=49.2
Q ss_pred ccccccCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCC
Q 001849 82 LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKL 161 (1005)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 161 (1005)
|.++..+-.|..+.|..|.+..+|.+++++..|.||||+.|++..+|..++.|+ |++|-+++ ++++.+|+.++.+..|
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTL 168 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhH
Confidence 333334444444444444444444444444445555555554444444444443 44444444 3344444444444445
Q ss_pred CEEEccCCcccccccccCCcccccccc
Q 001849 162 HHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (1005)
Q Consensus 162 ~~L~l~~n~~~~~~p~~i~~L~~L~~L 188 (1005)
.+||.+.|. +..+|..++.|.+|+.|
T Consensus 169 ~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 169 AHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred HHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 555555444 44444444444444444
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=4.7e-09 Score=99.62 Aligned_cols=100 Identities=29% Similarity=0.444 Sum_probs=35.7
Q ss_pred cCCCccEEEecCCCCcccCcccc-CCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhh-cccCCCCEE
Q 001849 87 KLQSLRVFSLRGYRILELPDSVG-DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHL 164 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L 164 (1005)
+..++|.|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++ |.+..+++.+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 556789999999999988 4565 6899999999999999995 588999999999999 5677776666 469999999
Q ss_pred EccCCcccccccc--cCCccccccccee
Q 001849 165 KNSNTKSLEEMPV--GIGRLTCLQTLCS 190 (1005)
Q Consensus 165 ~l~~n~~~~~~p~--~i~~L~~L~~L~~ 190 (1005)
++++|+ +..+-. .++.+++|+.|++
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeec
Confidence 999998 555432 2444555555543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=7.6e-09 Score=116.37 Aligned_cols=104 Identities=33% Similarity=0.475 Sum_probs=81.6
Q ss_pred cccCCCccEEEecCCCCcccCccccCCC-CCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCE
Q 001849 85 LLKLQSLRVFSLRGYRILELPDSVGDLR-YLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHH 163 (1005)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~~~~L~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (1005)
+..++.++.|++.+|.++++|...+.+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+.+|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhh
Confidence 3366778888888888888877777774 88888888888888887788888888888888 457777777778888888
Q ss_pred EEccCCcccccccccCCccccccccee
Q 001849 164 LKNSNTKSLEEMPVGIGRLTCLQTLCS 190 (1005)
Q Consensus 164 L~l~~n~~~~~~p~~i~~L~~L~~L~~ 190 (1005)
|++++|. +..+|..++.+..|++|.+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDL 216 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhh
Confidence 8888888 7788877666666776643
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.7e-09 Score=111.80 Aligned_cols=186 Identities=17% Similarity=0.086 Sum_probs=99.9
Q ss_pred ccCCCCCceEEecCCCCccc--ccccccCCCCccEEEeccCCCcccCCCC--CCCcccccccccccccccc-cCccccCC
Q 001849 710 LDNNTSLEKINISGCGNLQT--LPSGLHNLCQLQEISIASCGNLVSSPEG--GLPCAKLAMLAIYNCKRLE-ALPKGLHN 784 (1005)
Q Consensus 710 ~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~~~~l~-~~p~~~~~ 784 (1005)
...|++++.|+|++|-+..- +-.....||+|+.|+|+.|. +...... ...++.|+.|.++.|.+.- .+-.....
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34445555555554432221 11223445555555555552 2222111 1124456666666665431 12223345
Q ss_pred CcccceeecccCCCCC-cccCCCCCCccceEEecCchhhhhhhhhcCccccccCccceeeeeccCCCccccCCCCCCCCC
Q 001849 785 LKSLQELRIGKGVALP-SLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGS 863 (1005)
Q Consensus 785 l~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 863 (1005)
+|+|+.|++.+|+.+. ..-....+..|++|+|++|+.+....- .....+|.|+.|+++.|.+....+|+.. +
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~----s 293 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVE----S 293 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccchhhhhccccCcchhcCCCcc----c
Confidence 6666666666654221 111124556677777777776654321 3467889999999999876666666542 2
Q ss_pred CcccCCCCCcceeeecCCCCCccccc--cccCCCCcCeEecCC
Q 001849 864 GTVLPLPASLTYLRIEGFPNLERLTS--SIVDLQNLTGLVLGN 904 (1005)
Q Consensus 864 ~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~ 904 (1005)
+.....+++|++|++..|+ +...+. .+..+++|+.|.+..
T Consensus 294 ~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence 2333578999999999954 444332 345566777766543
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=1.7e-09 Score=115.26 Aligned_cols=102 Identities=32% Similarity=0.356 Sum_probs=92.9
Q ss_pred cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCEEEc
Q 001849 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN 166 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (1005)
.+.--...||+.|++.++|..++.+..|+.|.|.+|.|..+|..+++|..|.+|||+. +.+..+|..+..|. |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEE
Confidence 6777788999999999999999999999999999999999999999999999999999 57889999998875 999999
Q ss_pred cCCcccccccccCCcccccccceee
Q 001849 167 SNTKSLEEMPVGIGRLTCLQTLCSF 191 (1005)
Q Consensus 167 ~~n~~~~~~p~~i~~L~~L~~L~~~ 191 (1005)
++|+ ++.+|.+++.+..|.+|+..
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhh
Confidence 9999 99999999988888888643
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=4.7e-08 Score=110.00 Aligned_cols=126 Identities=25% Similarity=0.369 Sum_probs=106.2
Q ss_pred cccCCCceeEEecccccCCCCCCCCcccccccccCC-CccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhh
Q 001849 54 DLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQ-SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS 132 (1005)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~ 132 (1005)
.....+.+..+.+..+. ..++++....++ +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+
T Consensus 111 ~~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 183 (394)
T COG4886 111 ELLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183 (394)
T ss_pred hhhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh
Confidence 33455678888776654 567777777775 9999999999999999899999999999999999999999888
Q ss_pred cccccceeccccccccccchhhhcccCCCCEEEccCCcccccccccCCcccccccc
Q 001849 133 KLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (1005)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~L 188 (1005)
.+.+|+.|++++ +.+..+|..++.+..|++|++++|. ....+..++++.++..|
T Consensus 184 ~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 184 NLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 999999999999 6799999888888899999999997 55566666666666655
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.5e-08 Score=104.90 Aligned_cols=149 Identities=19% Similarity=0.113 Sum_probs=69.5
Q ss_pred cceeEEEEEcCCCccccccccccCCCceeEEecccccCCCCCCCCcccccccc-cCCCccEEEecCCCCcccCcc--ccC
Q 001849 34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDS--VGD 110 (1005)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~--~~~ 110 (1005)
++.|.+++.+........-.....|+++|.|.++.+--+ .....-.+. .+++|+.|+++.|++...-++ -..
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-----hHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 345555555444333221123445666666655443110 011112233 666666666666665432211 134
Q ss_pred CCCCcEEEccCCCCc--ccChhhhcccccceeccccccccccchhhhcccCCCCEEEccCCccccccc--ccCCcccccc
Q 001849 111 LRYLRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQ 186 (1005)
Q Consensus 111 L~~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p--~~i~~L~~L~ 186 (1005)
+.+|+.|.|+.|.++ ++-......++|+.|+|.+|+.+..-.....-+..|+.|||++|+ +...+ ..++.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchh
Confidence 556666666666555 232334445666666666653332222233445556666666665 33343 2244455554
Q ss_pred cc
Q 001849 187 TL 188 (1005)
Q Consensus 187 ~L 188 (1005)
.|
T Consensus 275 ~L 276 (505)
T KOG3207|consen 275 QL 276 (505)
T ss_pred hh
Confidence 44
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=6.7e-08 Score=75.07 Aligned_cols=57 Identities=32% Similarity=0.521 Sum_probs=38.4
Q ss_pred CCccEEEecCCCCcccC-ccccCCCCCcEEEccCCCCcccC-hhhhcccccceeccccc
Q 001849 89 QSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLP-ESVSKLYNLHSLLLEDC 145 (1005)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~ 145 (1005)
++|++|++++|+++.+| +.|.++++|++|++++|.|+.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35667777777777765 45667777777777777777664 35667777777777664
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=4e-07 Score=97.06 Aligned_cols=93 Identities=29% Similarity=0.549 Sum_probs=51.4
Q ss_pred ccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccc
Q 001849 710 LDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQ 789 (1005)
Q Consensus 710 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 789 (1005)
+..+.+++.|++++| .+..+|. -.++|++|.+++|..+..+|.... ++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 445677777777777 4444552 123577777777777766665332 3677777777755555553 344
Q ss_pred eeecccCCCCCcccCCCCCCccceEEec
Q 001849 790 ELRIGKGVALPSLEEDGLPTNLHVLLIN 817 (1005)
Q Consensus 790 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 817 (1005)
.|++.+ +....++ .+|++|+.|.+.
T Consensus 116 ~L~L~~-n~~~~L~--~LPssLk~L~I~ 140 (426)
T PRK15386 116 SLEIKG-SATDSIK--NVPNGLTSLSIN 140 (426)
T ss_pred eEEeCC-CCCcccc--cCcchHhheecc
Confidence 455543 2222221 234455555553
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.1e-07 Score=111.66 Aligned_cols=99 Identities=22% Similarity=0.327 Sum_probs=87.9
Q ss_pred CccEEEecCCCCc-ccCccccCCCCCcEEEccCCCCc-ccChhhhcccccceeccccccccccchhhhcccCCCCEEEcc
Q 001849 90 SLRVFSLRGYRIL-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS 167 (1005)
Q Consensus 90 ~Lr~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 167 (1005)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|+.+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998 67999999999999999999997 889999999999999999988778999999999999999999
Q ss_pred CCcccccccccCCcc-cccccc
Q 001849 168 NTKSLEEMPVGIGRL-TCLQTL 188 (1005)
Q Consensus 168 ~n~~~~~~p~~i~~L-~~L~~L 188 (1005)
+|.+.+.+|..++.+ .++..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCcccccCChHHhhccccCceE
Confidence 999888999887653 344444
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=2.4e-08 Score=97.88 Aligned_cols=100 Identities=33% Similarity=0.405 Sum_probs=59.2
Q ss_pred cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccch--------------
Q 001849 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC-------------- 152 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-------------- 152 (1005)
..+.|+.||||+|.|+.+.+++.-++.+|.|++|+|.|..+- .+..|++|+.|||++| .+..+-
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 556667777777777776666666677777777777776663 3666777777777764 233332
Q ss_pred --------hhhcccCCCCEEEccCCccccccc--ccCCcccccccce
Q 001849 153 --------ADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTLC 189 (1005)
Q Consensus 153 --------~~i~~L~~L~~L~l~~n~~~~~~p--~~i~~L~~L~~L~ 189 (1005)
.++++|.+|..||+++|+ +..+- .+||+|+.|+++.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHh
Confidence 234445555555555555 44433 2355555555553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.7e-07 Score=72.79 Aligned_cols=58 Identities=33% Similarity=0.420 Sum_probs=51.0
Q ss_pred CCCcEEEccCCCCcccCh-hhhcccccceeccccccccccch-hhhcccCCCCEEEccCCc
Q 001849 112 RYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTK 170 (1005)
Q Consensus 112 ~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~ 170 (1005)
++|++|++++|+|+.+|. .|.++++|++|++++|. +..+| ..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999984 69999999999999865 55555 578999999999999997
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=2.9e-07 Score=108.24 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=94.9
Q ss_pred CccEEEEcCCCChhhHHHhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCcccccccccc
Q 001849 691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIY 770 (1005)
Q Consensus 691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 770 (1005)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999998888899999999999999999999999999999999999999999998777888888888999999999
Q ss_pred cccccccCccccCCC-cccceeecccCCCCCc
Q 001849 771 NCKRLEALPKGLHNL-KSLQELRIGKGVALPS 801 (1005)
Q Consensus 771 ~~~~l~~~p~~~~~l-~~L~~L~l~~~~~l~~ 801 (1005)
+|.+.+.+|..+..+ .++..+++.+|+.+..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 999888998877653 4566777777765543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=5.6e-08 Score=95.35 Aligned_cols=134 Identities=23% Similarity=0.177 Sum_probs=91.6
Q ss_pred ccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCEEEccCCcccccccccCCccccccc
Q 001849 108 VGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQT 187 (1005)
Q Consensus 108 ~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i~~L~~L~~ 187 (1005)
+..-..|..||||+|.|+.+-+++.-++.++.|++++| .+..+. .+..|.+|++||+++|. +.++-.+-.+|-+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence 33446799999999999999999999999999999995 465553 48999999999999998 6666655566777777
Q ss_pred ceeeEecccCCCCcccccccccccceeEEeccccccchhhhhhhhhcCCCCCceEEEEeecCCC
Q 001849 188 LCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGS 251 (1005)
Q Consensus 188 L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 251 (1005)
|.+..+ .+..++.|.+|. ++.-.++.......-.....+++++.|+.+.+..|....
T Consensus 357 L~La~N------~iE~LSGL~KLY-SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQN------KIETLSGLRKLY-SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhh------hHhhhhhhHhhh-hheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 754332 344444444443 222222222111111122358889999999998776433
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=1.7e-06 Score=92.49 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=18.2
Q ss_pred CCCccEEEEcCCCChhhHHHhccCCCCCceEEecCCCCcccc
Q 001849 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTL 730 (1005)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 730 (1005)
|++|++|.+++|..+..+|+.+ .++|++|++++|..+..+
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence 4455555555555544444322 134445555444333333
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=9.3e-07 Score=62.33 Aligned_cols=40 Identities=30% Similarity=0.486 Sum_probs=27.9
Q ss_pred CCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccC
Q 001849 89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP 128 (1005)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp 128 (1005)
++|++|++++|+|+.+|..+++|++|++|++++|+|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4677777777777777666777777777777777777664
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.2e-08 Score=95.18 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=101.8
Q ss_pred CCccEEEEcCCCChh-hHHHhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCC--CCCcccccc
Q 001849 690 PSLKLLLVWGCSKLE-SIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG--GLPCAKLAM 766 (1005)
Q Consensus 690 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~ 766 (1005)
+.|++|||++-.+.. .+...+..|.+|+.|.+.|+.....+...+..-.+|+.|+|+.|..++..... +.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 458899998876654 34566788889999999988887777777777788888888888655543221 223555666
Q ss_pred cccccccccccCccccCCCcccceeecccCCCCCcccCCCCCCccceEEecCchhhhh-hhhhcCccccccCccceeeee
Q 001849 767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWK-SMIERGRGFHRFSSLRQLTIM 845 (1005)
Q Consensus 767 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~ 845 (1005)
|+++.|......-..+ ......+|+.|+++|+..... .-.+ .-...+|+|.+|||+
T Consensus 265 LNlsWc~l~~~~Vtv~---------------------V~hise~l~~LNlsG~rrnl~~sh~~--tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVA---------------------VAHISETLTQLNLSGYRRNLQKSHLS--TLVRRCPNLVHLDLS 321 (419)
T ss_pred cCchHhhccchhhhHH---------------------HhhhchhhhhhhhhhhHhhhhhhHHH--HHHHhCCceeeeccc
Confidence 6666665433221100 001223444444444431110 0000 123456666666666
Q ss_pred ccCCCccccCCCCCCCCCCcccCCCCCcceeeecCCCCCccccc---cccCCCCcCeEecCCC
Q 001849 846 NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS---SIVDLQNLTGLVLGNC 905 (1005)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~l~~L~~L~l~~c 905 (1005)
+|. .+ .+ ..-..+-.++.|++|.++.|-.+ +|. .+.+.|+|.+|++.+|
T Consensus 322 D~v-~l---~~-----~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 322 DSV-ML---KN-----DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccc-cc---Cc-----hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 642 11 11 01122235566666666666433 221 2466778888888887
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=3.7e-07 Score=102.60 Aligned_cols=107 Identities=26% Similarity=0.335 Sum_probs=82.1
Q ss_pred ccccccccCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccC
Q 001849 80 SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV 159 (1005)
Q Consensus 80 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 159 (1005)
++...+..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++| .+..++ .+..+.
T Consensus 86 ~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~ 162 (414)
T KOG0531|consen 86 KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLK 162 (414)
T ss_pred hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccch
Confidence 334445688999999999999998865588899999999999999988 45788888999999994 465553 666788
Q ss_pred CCCEEEccCCccccccccc-CCccccccccee
Q 001849 160 KLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCS 190 (1005)
Q Consensus 160 ~L~~L~l~~n~~~~~~p~~-i~~L~~L~~L~~ 190 (1005)
.|+.+++++|. +..+... ...+.+++.+.+
T Consensus 163 ~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 163 SLKLLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred hhhcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 99999999998 6666543 466666666643
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.7e-08 Score=96.02 Aligned_cols=88 Identities=24% Similarity=0.240 Sum_probs=56.4
Q ss_pred ccccEEeeccccCcc-ccCcccCCCCCccEEEEcCCCCccccC-CCCCCCCCcEEEEccCCCCCCCchhhccCCCCCccE
Q 001849 525 ELLEYLRLSYCEGLV-KLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI 602 (1005)
Q Consensus 525 ~~L~~L~ls~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 602 (1005)
+.|+++|++...... .+...+..+.+|+.|.+.++..-..+. ..+.-.+|+.|+++.|..++......+..+++.|++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457777777644332 233345567778888777764333222 234456788888888887777665555578888888
Q ss_pred EEEeCCCCCC
Q 001849 603 LEISGCDSLT 612 (1005)
Q Consensus 603 L~l~~~~~l~ 612 (1005)
|++++|...+
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 8888884443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=7.5e-06 Score=57.73 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=27.9
Q ss_pred CCCcEEEccCCCCcccChhhhcccccceeccccccccccch
Q 001849 112 RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC 152 (1005)
Q Consensus 112 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp 152 (1005)
++|++|++++|+|+++|..|++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4678888888888888777888888888888875 354443
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=2.4e-06 Score=86.64 Aligned_cols=83 Identities=24% Similarity=0.288 Sum_probs=54.6
Q ss_pred CCccEEEEcCCCChh----hHHHhccCCCCCceEEecCCCCccc----ccc-------cccCCCCccEEEeccCCCcccC
Q 001849 690 PSLKLLLVWGCSKLE----SIAEMLDNNTSLEKINISGCGNLQT----LPS-------GLHNLCQLQEISIASCGNLVSS 754 (1005)
Q Consensus 690 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~~~-------~l~~l~~L~~L~l~~~~~l~~~ 754 (1005)
.+++++++++|.+-. .+...+.+.+.|+..++++ -.++. +|. .+...++|++|+||+|-.-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 578999999987754 3455677778888888885 33332 232 3455778888888888433333
Q ss_pred CCC----CCCccccccccccccc
Q 001849 755 PEG----GLPCAKLAMLAIYNCK 773 (1005)
Q Consensus 755 ~~~----~~~~~~L~~L~l~~~~ 773 (1005)
+.. +..+..|++|.+.+|.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC
Confidence 222 2236788888888886
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=4.4e-06 Score=72.70 Aligned_cols=91 Identities=25% Similarity=0.272 Sum_probs=66.1
Q ss_pred ccCCCccEEEecCCCCcccCccc-cCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCEE
Q 001849 86 LKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL 164 (1005)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (1005)
.+..+|...+|++|.++.+|..| ...+..++|+|++|.|.++|.++..++.|+.|+++. |.+...|..|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence 35666777778888887777766 344577778888888888887777788888888877 4466667777777777777
Q ss_pred EccCCccccccccc
Q 001849 165 KNSNTKSLEEMPVG 178 (1005)
Q Consensus 165 ~l~~n~~~~~~p~~ 178 (1005)
+..+|. ...+|..
T Consensus 129 ds~~na-~~eid~d 141 (177)
T KOG4579|consen 129 DSPENA-RAEIDVD 141 (177)
T ss_pred cCCCCc-cccCcHH
Confidence 777776 5566644
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=9.6e-07 Score=97.37 Aligned_cols=103 Identities=28% Similarity=0.320 Sum_probs=74.9
Q ss_pred ccccccCCCccEEEecCCCCcccC------ccccCC--------------------------CCCcEEEccCCCCcccCh
Q 001849 82 LPKLLKLQSLRVFSLRGYRILELP------DSVGDL--------------------------RYLRYLNLSGTEIRTLPE 129 (1005)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~lp------~~~~~L--------------------------~~L~~L~Ls~n~i~~lp~ 129 (1005)
|-++|.+++||+|.|.++.+...- ..+..+ ..|.+-+.++|.+..+-.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 678889999999999999876421 000000 136666778888887778
Q ss_pred hhhcccccceeccccccccccchhhhcccCCCCEEEccCCccccccccc-CCcccccccc
Q 001849 130 SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTL 188 (1005)
Q Consensus 130 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~-i~~L~~L~~L 188 (1005)
++.-++.|+.|||++| .+...- .+..|.+|+|||+++|. +..+|.- ..... |+.|
T Consensus 182 SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccccchhhhh-heee
Confidence 8888999999999995 455553 78899999999999998 7888753 22332 5555
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.75 E-value=4.1e-06 Score=84.96 Aligned_cols=217 Identities=18% Similarity=0.165 Sum_probs=147.8
Q ss_pred hHHHhccCCCCCceEEecCCCCccc----ccccccCCCCccEEEeccCCCccc----CCC-------CCCCccccccccc
Q 001849 705 SIAEMLDNNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLVS----SPE-------GGLPCAKLAMLAI 769 (1005)
Q Consensus 705 ~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~----~~~-------~~~~~~~L~~L~l 769 (1005)
...+.......+++++|++|.+-.. +...+.+.+.|+..++++- ..+. +|. ....++.|++|+|
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 3446677889999999999987543 3455677889999999874 2221 222 2334679999999
Q ss_pred ccccccccCcc----ccCCCcccceeecccCCCCCcc---------------cCCCCCCccceEEecCchhhhhhhhhcC
Q 001849 770 YNCKRLEALPK----GLHNLKSLQELRIGKGVALPSL---------------EEDGLPTNLHVLLINGNMEIWKSMIERG 830 (1005)
Q Consensus 770 ~~~~~l~~~p~----~~~~l~~L~~L~l~~~~~l~~~---------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 830 (1005)
|+|.+-...+. .+.+++.|++|.+.+|- +... ...+.++.|+++...+|+.-..+...+-
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 99986544444 34678999999999874 2211 1124568999999999986654443333
Q ss_pred ccccccCccceeeeeccCCCccccCCCCCCCCCCcccCCCCCcceeeecCCCCCc----cccccccCCCCcCeEecCCCC
Q 001849 831 RGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLE----RLTSSIVDLQNLTGLVLGNCP 906 (1005)
Q Consensus 831 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~ 906 (1005)
..|+..+.|+.+.++.|.+..+.+. .-...+..+++|+.||+++|..-. .+...+..+++|+.|++++|.
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVT------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHhccccceEEEecccccCchhH------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 5678889999999999864443321 011234678999999999964322 234456778899999999996
Q ss_pred CCCCCCCC-------CCccccceeeeccCcc
Q 001849 907 KLKYFPEK-------GLPSSLLQLSINRCPL 930 (1005)
Q Consensus 907 ~l~~l~~~-------~~~~sL~~L~i~~c~~ 930 (1005)
++.=-.. ...++|++|++.+|..
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchh
Confidence 3221110 1247899999888863
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.74 E-value=8e-06 Score=91.91 Aligned_cols=191 Identities=23% Similarity=0.231 Sum_probs=103.0
Q ss_pred ccccEEeeccccCccccCcccCCCCCccEEEEcCCCCccccCC-CCCCCCCcEEEEccCCCCCCCchhhccCCCCCccEE
Q 001849 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (1005)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 603 (1005)
..++.+++..|...+ .-..+..+.+|..|++.++ .+..+.. ...+++|++|++++|. ++.+... ..++.|+.|
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l---~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNK-ITKLEGL---STLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeecccc-chhhcccchhhhhcchheeccccc-cccccch---hhccchhhh
Confidence 556666666655433 2223566777888888775 4555554 5566677777777763 3333332 344556666
Q ss_pred EEeCCCCCCcccCCCCCCCcceEeeeecCCCccccccccccccCCCCCCCCCcceEEEccCCCCcccccCCCcchhhccc
Q 001849 604 EISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESL 683 (1005)
Q Consensus 604 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~ 683 (1005)
++++| .+..+.....+
T Consensus 146 ~l~~N-~i~~~~~~~~l--------------------------------------------------------------- 161 (414)
T KOG0531|consen 146 NLSGN-LISDISGLESL--------------------------------------------------------------- 161 (414)
T ss_pred eeccC-cchhccCCccc---------------------------------------------------------------
Confidence 66666 22222222222
Q ss_pred ccCCCCCCccEEEEcCCCChhhHH-HhccCCCCCceEEecCCCCcccccccccCCCCccEEEeccCCCcccCCCCCCCcc
Q 001849 684 EVGNLPPSLKLLLVWGCSKLESIA-EMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA 762 (1005)
Q Consensus 684 ~~~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 762 (1005)
..|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.....-+.......
T Consensus 162 ------~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~ 232 (414)
T KOG0531|consen 162 ------KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVML 232 (414)
T ss_pred ------hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhH
Confidence 456666666665444333 2 46667777777777655442 2334444455556666632222211111111
Q ss_pred cccccccccccccccCccccCCCcccceeeccc
Q 001849 763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGK 795 (1005)
Q Consensus 763 ~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~ 795 (1005)
.|+.+++.+|+. ...+..+..+..+..|++.+
T Consensus 233 ~L~~l~l~~n~i-~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 233 HLRELYLSGNRI-SRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHHhcccCcc-ccccccccccccccccchhh
Confidence 277777777773 33334556667777777766
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=4.1e-05 Score=75.84 Aligned_cols=108 Identities=10% Similarity=-0.019 Sum_probs=69.2
Q ss_pred CccEEEeccCCCccccchhhHHHHHHHhhccccEEeeccccCcc--ccCcccCCCCCccEEEEcCCCCccccCCC-CCCC
Q 001849 496 SLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYGCRSLVSFPEV-ALPS 572 (1005)
Q Consensus 496 ~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~ 572 (1005)
.++-+.+.+|. +........+...++.++.+|+.+|.... .+...+.++|.|+.|+++.|+.-..+... .-..
T Consensus 46 a~ellvln~~~----id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSI----IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred chhhheecCCC----CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 44455555542 22233344566667889999999987653 34445668999999999998765555444 2456
Q ss_pred CCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCC
Q 001849 573 KLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGC 608 (1005)
Q Consensus 573 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 608 (1005)
+|++|.+.+...--.-...+ ...+|.+++|+++.|
T Consensus 122 nl~~lVLNgT~L~w~~~~s~-l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSS-LDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhh-hhcchhhhhhhhccc
Confidence 88888887764322222222 266788888888887
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=1.4e-05 Score=69.57 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=81.4
Q ss_pred cccCCCceeEEecccccCCCCCCCCcccccccc-cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhh
Q 001849 54 DLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS 132 (1005)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~ 132 (1005)
.+.+..+|.+..+.++. ..++|+.+. +++.++.|+|++|.|.++|..+..++.||.|+++.|.+...|..|.
T Consensus 48 ~l~~~~el~~i~ls~N~-------fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~ 120 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNG-------FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA 120 (177)
T ss_pred HHhCCceEEEEecccch-------hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH
Confidence 34567788888887765 578888888 9999999999999999999999999999999999999999999999
Q ss_pred cccccceeccccccccccchhh
Q 001849 133 KLYNLHSLLLEDCDRLEKLCAD 154 (1005)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~ 154 (1005)
.|.+|-+||..+ +....+|-.
T Consensus 121 ~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 121 PLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred HHHhHHHhcCCC-CccccCcHH
Confidence 999999999998 456677655
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=6e-05 Score=88.36 Aligned_cols=105 Identities=29% Similarity=0.331 Sum_probs=78.8
Q ss_pred CceeEEecccccCCCCCCCCcccccccc-cCCCccEEEecCCCCc--ccCccccCCCCCcEEEccCCCCcccChhhhccc
Q 001849 59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRIL--ELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLY 135 (1005)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~ 135 (1005)
.+||.|.+.+.. .....++..++ .+++||.|.+++-.+. ++-.-..++++|+.||+|+++|+.+ .+|++|+
T Consensus 122 ~nL~~LdI~G~~-----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSE-----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccc-----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 456677665533 23566777888 9999999999887654 2223457889999999999999988 7899999
Q ss_pred ccceeccccccccccch--hhhcccCCCCEEEccCCc
Q 001849 136 NLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTK 170 (1005)
Q Consensus 136 ~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~ 170 (1005)
+|++|.+++ -.+..-. ..+.+|++|++||+|...
T Consensus 196 nLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 196 NLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cHHHHhccC-CCCCchhhHHHHhcccCCCeeeccccc
Confidence 999999987 3333222 457889999999999776
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00016 Score=71.77 Aligned_cols=189 Identities=14% Similarity=0.108 Sum_probs=99.2
Q ss_pred cCCCCCceEEecCCCCcc--cccccccCCCCccEEEeccCCCcccCCCCCCCccccccccccccccc-ccCccccCCCcc
Q 001849 711 DNNTSLEKINISGCGNLQ--TLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRL-EALPKGLHNLKS 787 (1005)
Q Consensus 711 ~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l-~~~p~~~~~l~~ 787 (1005)
..++.++.++|.+|.+.. ++...+.++|.|++|+|+.|+....+.....+..+|+.|-+.|-... ......+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345667777777765542 23344566777777777777654444333345667777777654421 122334567777
Q ss_pred cceeecccCCCC----CcccCCCCCCccceEEecCchhhhhhhhhcCccccccCccceeeeeccCCCccccCCCCCCCCC
Q 001849 788 LQELRIGKGVAL----PSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGS 863 (1005)
Q Consensus 788 L~~L~l~~~~~l----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 863 (1005)
+++|+++.|+.- ..-......+.+++|+...|....-...- ..-..+|++..+-+..|....+.-....
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~PlK~~s~ek~s----- 220 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGPLKTESSEKGS----- 220 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCcccchhhcccC-----
Confidence 777777775311 11111133456666777666643211100 1123456777676666533222211111
Q ss_pred CcccCCCCCcceeeecCCCCCccccc--cccCCCCcCeEecCCCCCCCCC
Q 001849 864 GTVLPLPASLTYLRIEGFPNLERLTS--SIVDLQNLTGLVLGNCPKLKYF 911 (1005)
Q Consensus 864 ~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l 911 (1005)
..++.+-.|.++. +++.+..+ .+.+|+.|..|.+.+.|-...+
T Consensus 221 ----e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 221 ----EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ----CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 2345555666666 34444321 3466777777777776655544
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=5.8e-06 Score=91.40 Aligned_cols=103 Identities=24% Similarity=0.193 Sum_probs=74.2
Q ss_pred cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhh-hcccCCCCEEE
Q 001849 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLK 165 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 165 (1005)
..-.|.+-++++|.+..+..++.-++.|+.|+|++|+++.. +.+..+++|++|||++ |.+..+|.- ....+ |+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhccccccccccc-chhccccccchhhhh-heeee
Confidence 34467777888888877777777888888888888888776 3678888888888888 457777642 23333 88888
Q ss_pred ccCCcccccccccCCcccccccceeeEec
Q 001849 166 NSNTKSLEEMPVGIGRLTCLQTLCSFVVG 194 (1005)
Q Consensus 166 l~~n~~~~~~p~~i~~L~~L~~L~~~~~~ 194 (1005)
+++|. +..+ .++.+|.+|+.|++.++-
T Consensus 239 lrnN~-l~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 239 LRNNA-LTTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred ecccH-HHhh-hhHHhhhhhhccchhHhh
Confidence 88887 5555 467788888887765543
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.30 E-value=2.3e-05 Score=91.29 Aligned_cols=64 Identities=27% Similarity=0.475 Sum_probs=30.4
Q ss_pred CCCCcEEEEccCCCCCCCchhhccCCCCCccEEEEeCCCCCCcccC---CCCCCCcceEeeeecCCC
Q 001849 571 PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAG---VQLPPSLKRLKICHCDNI 634 (1005)
Q Consensus 571 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l 634 (1005)
+.+|+.|++++|..+........+..+++|+.|.+.+|..+++..- ...+++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3455555555554444444333334455666666555544332111 123345555555555544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00035 Score=65.73 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=78.1
Q ss_pred cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhc-ccccceeccccccccccch--hhhcccCCCCE
Q 001849 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSK-LYNLHSLLLEDCDRLEKLC--ADMGNLVKLHH 163 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~-L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~ 163 (1005)
-......+||++|.+..+ +.|..+..|.+|.|.+|+|+.|-..+.. +++|..|.|.+| .+..+. ..+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 556778899999999887 4688999999999999999999555554 567999999995 455543 24678889999
Q ss_pred EEccCCcccccccc----cCCcccccccceeeE
Q 001849 164 LKNSNTKSLEEMPV----GIGRLTCLQTLCSFV 192 (1005)
Q Consensus 164 L~l~~n~~~~~~p~----~i~~L~~L~~L~~~~ 192 (1005)
|.+-+|. ...-+. -+.++++|++|+...
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 9999987 444332 266777777776433
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.26 E-value=1.9e-05 Score=92.10 Aligned_cols=82 Identities=27% Similarity=0.379 Sum_probs=49.2
Q ss_pred cccccCccceeeeeccCCCccccCCCCCCCCCCcccCCCCCcc-eeeecCCCCC-ccccccccCCCCcCeEecCCCCCCC
Q 001849 832 GFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLT-YLRIEGFPNL-ERLTSSIVDLQNLTGLVLGNCPKLK 909 (1005)
Q Consensus 832 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~ 909 (1005)
.+..++.++.+.+..+. . .... .+.+.+|+.+ ..+.........++.|+++.|...+
T Consensus 357 ~~~~~~~l~~~~l~~~~-~--------------------~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCG-I--------------------SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHhcCCCcchhhhhhhh-c--------------------cCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence 45677888888877752 1 1111 4566777777 4444333445558888888887655
Q ss_pred CCCCCCC---ccccceeeeccCcchHHh
Q 001849 910 YFPEKGL---PSSLLQLSINRCPLIEEK 934 (1005)
Q Consensus 910 ~l~~~~~---~~sL~~L~i~~c~~l~~~ 934 (1005)
.-.-... -.+++.+++.+|+.....
T Consensus 416 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 416 DKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccchHHHhhhhhccccCCccCcccccch
Confidence 4322111 345777888888766543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00018 Score=84.44 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=91.8
Q ss_pred cceeEEEEEcCCCcccccc--ccccCCCceeEEecccccCCCCCCCCcccccccc-cCCCccEEEecCCCCcccCccccC
Q 001849 34 RYLRHLSYIRGDYDGVQRF--GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGD 110 (1005)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~ 110 (1005)
...||+.+.+...- ...+ .-..-+|.||+|.+.+..- ..+-...++ ++++|+.||+|+++++.+ ..++.
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCcee------cchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 45677777654321 1112 1234689999998876431 122234455 999999999999999998 78999
Q ss_pred CCCCcEEEccCCCCcccC--hhhhcccccceeccccccccccch---h----hhcccCCCCEEEccCCcc
Q 001849 111 LRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLC---A----DMGNLVKLHHLKNSNTKS 171 (1005)
Q Consensus 111 L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp---~----~i~~L~~L~~L~l~~n~~ 171 (1005)
|++|++|.+.+=.+..-+ ..+.+|++|++||+|... ....+ . --..|++||.||.|++..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999999999998887533 468899999999999843 22222 1 123489999999998873
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.90 E-value=0.00017 Score=70.63 Aligned_cols=94 Identities=23% Similarity=0.229 Sum_probs=64.5
Q ss_pred ccccccCCCccEEEecCCCCcc-----cCccccCCCCCcEEEccCCCCc----ccCh-------hhhcccccceeccccc
Q 001849 82 LPKLLKLQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIR----TLPE-------SVSKLYNLHSLLLEDC 145 (1005)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~----~lp~-------~i~~L~~L~~L~L~~~ 145 (1005)
...+..+..+..+|||||.|.. +...+.+-.+|++-+++.-... ++|+ .+-++++|+..+||.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3344478888899999998862 4456677788888888865222 3443 3456788889999886
Q ss_pred cccccchh----hhcccCCCCEEEccCCccccccc
Q 001849 146 DRLEKLCA----DMGNLVKLHHLKNSNTKSLEEMP 176 (1005)
Q Consensus 146 ~~~~~lp~----~i~~L~~L~~L~l~~n~~~~~~p 176 (1005)
-.-...|+ -|++-+.|.||.+++|. ++.+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 54444443 35667889999998887 66553
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.49 E-value=0.00096 Score=38.93 Aligned_cols=19 Identities=47% Similarity=0.908 Sum_probs=9.9
Q ss_pred CcEEEccCCCCcccChhhh
Q 001849 114 LRYLNLSGTEIRTLPESVS 132 (1005)
Q Consensus 114 L~~L~Ls~n~i~~lp~~i~ 132 (1005)
||+|||++|+|+.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554444
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.43 E-value=0.0034 Score=59.27 Aligned_cols=99 Identities=24% Similarity=0.392 Sum_probs=69.9
Q ss_pred ccEEEecCCCCcccCcccc-CCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhc-ccCCCCEEEccC
Q 001849 91 LRVFSLRGYRILELPDSVG-DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMG-NLVKLHHLKNSN 168 (1005)
Q Consensus 91 Lr~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L~l~~ 168 (1005)
=+.++|.+.++..+-. ++ -+.+...+||++|.+..++ .|..+.+|.+|.+.+|+ +..+-..+. .+.+|..|.+.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecC
Confidence 4667777777665422 32 2457889999999998874 47889999999999955 555555554 466799999999
Q ss_pred Ccccccccc--cCCcccccccceeeEe
Q 001849 169 TKSLEEMPV--GIGRLTCLQTLCSFVV 193 (1005)
Q Consensus 169 n~~~~~~p~--~i~~L~~L~~L~~~~~ 193 (1005)
|. +..+.. .+..++.|+.|.+..+
T Consensus 98 Ns-i~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 98 NS-IQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cc-hhhhhhcchhccCCccceeeecCC
Confidence 98 666542 2556667777755443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00041 Score=68.30 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccch--hhhcccCCCCEEE
Q 001849 88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLK 165 (1005)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~ 165 (1005)
+.+.+.|++-|+.+..| ....+++.|++|.||-|+|+.+ ..+..+++|+.|+|+.| .+..+- ..+.+|++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 44455566666666655 2335666666666666666666 33666666666666663 344432 2345666666666
Q ss_pred ccCCccccccccc-----CCcccccccce
Q 001849 166 NSNTKSLEEMPVG-----IGRLTCLQTLC 189 (1005)
Q Consensus 166 l~~n~~~~~~p~~-----i~~L~~L~~L~ 189 (1005)
|..|.-.+.-+.. +.-|++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666543433321 33455555553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0019 Score=63.81 Aligned_cols=104 Identities=22% Similarity=0.220 Sum_probs=47.5
Q ss_pred cCCCccEEEecCCCCcccCccccCCCCCcEEEccCC--CCc-ccChhhhcccccceeccccccccccch--hhhcccCCC
Q 001849 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGT--EIR-TLPESVSKLYNLHSLLLEDCDRLEKLC--ADMGNLVKL 161 (1005)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L 161 (1005)
.+..|..|++.+..++.+ ..|..|++|++|.++.| ++. .++--..++++|++|++++| .++.+- ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 444444555544444443 23445555666666655 333 33333334455666666553 233211 123445555
Q ss_pred CEEEccCCcccccccc----cCCcccccccceeeEe
Q 001849 162 HHLKNSNTKSLEEMPV----GIGRLTCLQTLCSFVV 193 (1005)
Q Consensus 162 ~~L~l~~n~~~~~~p~----~i~~L~~L~~L~~~~~ 193 (1005)
..||+.+|. ...+-. .+.-+++|..|+...+
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhcccccccc
Confidence 555555554 222211 1344555555554433
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.0007 Score=66.76 Aligned_cols=80 Identities=25% Similarity=0.265 Sum_probs=67.5
Q ss_pred cc-cCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccC--hhhhcccccceeccccccccccchh-----hhc
Q 001849 85 LL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLCA-----DMG 156 (1005)
Q Consensus 85 ~~-~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~-----~i~ 156 (1005)
++ +|+.|+||.|+-|.|+.+ ..+..++.|+.|+|..|.|..+- ..+.+|++|++|-|..|...+.-+. .+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 44 999999999999999998 56899999999999999998774 3488999999999998766655543 367
Q ss_pred ccCCCCEEE
Q 001849 157 NLVKLHHLK 165 (1005)
Q Consensus 157 ~L~~L~~L~ 165 (1005)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 788888887
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.99 E-value=0.00097 Score=65.52 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=48.8
Q ss_pred CCccEEEEcCCCChhh----HHHhccCCCCCceEEecCCCCccc----cc-------ccccCCCCccEEEeccCCCcccC
Q 001849 690 PSLKLLLVWGCSKLES----IAEMLDNNTSLEKINISGCGNLQT----LP-------SGLHNLCQLQEISIASCGNLVSS 754 (1005)
Q Consensus 690 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~-------~~l~~l~~L~~L~l~~~~~l~~~ 754 (1005)
..+++++||+|.+-+. +...+.+-.+|+..+++.- .++. ++ ..+-++|+|+..+||+|-.-..+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4678888888877543 3445556677777777752 2222 11 23455777777777777544444
Q ss_pred CCC----CCCccccccccccccc
Q 001849 755 PEG----GLPCAKLAMLAIYNCK 773 (1005)
Q Consensus 755 ~~~----~~~~~~L~~L~l~~~~ 773 (1005)
|.. +...+.|++|.+++|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC
Confidence 432 1223566677776665
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.003 Score=36.85 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.8
Q ss_pred CccEEEecCCCCcccCccccCC
Q 001849 90 SLRVFSLRGYRILELPDSVGDL 111 (1005)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~~~~L 111 (1005)
+|++||+++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999878764
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.59 E-value=0.0082 Score=59.48 Aligned_cols=113 Identities=23% Similarity=0.268 Sum_probs=65.4
Q ss_pred CCCCccEEEEccccCcc-ccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCccEEEe
Q 001849 397 HLPALEMLVIEGCEELL-VSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 475 (1005)
Q Consensus 397 ~l~~L~~L~l~~c~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 475 (1005)
.+..|+.+.+.++.... ..++.+|+|+.|.++.+..-...... .....+|+|+++++
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~----------------------vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE----------------------VLAEKAPNLKVLNL 98 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccce----------------------ehhhhCCceeEEee
Confidence 45556666666655443 36777888888888877321111110 11234589999999
Q ss_pred cccccceeecccCCccccCCCccEEEeccCCCccccchhhHHHHHHHhhccccEEeecccc
Q 001849 476 STKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCE 536 (1005)
Q Consensus 476 ~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~ 536 (1005)
++|++..+.. ...+..+.+|..|++.+|.... + .........+.++|++|+-....
T Consensus 99 s~Nki~~lst--l~pl~~l~nL~~Ldl~n~~~~~-l--~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 99 SGNKIKDLST--LRPLKELENLKSLDLFNCSVTN-L--DDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cCCccccccc--cchhhhhcchhhhhcccCCccc-c--ccHHHHHHHHhhhhccccccccC
Confidence 9998876432 3345667777788888875443 1 11222333344666666655543
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.31 E-value=0.048 Score=49.91 Aligned_cols=118 Identities=10% Similarity=0.238 Sum_probs=57.2
Q ss_pred ccccCCCceeEEecccccCCCCCCCCcccccccc-cCCCccEEEecCCCCcccC-ccccCCCCCcEEEccCCCCcccCh-
Q 001849 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE- 129 (1005)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~- 129 (1005)
..|.++++|+.+.+... ...+....| .+++|+.+.+.++ +..++ ..|.++..|+.+.+.. .+..++.
T Consensus 6 ~~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred HHHhCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc
Confidence 35667777777765421 345666666 7778888888764 66664 4567777788888865 5555643
Q ss_pred hhhcccccceeccccccccccchh-hhcccCCCCEEEccCCccccccccc-CCccccc
Q 001849 130 SVSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCL 185 (1005)
Q Consensus 130 ~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~~p~~-i~~L~~L 185 (1005)
.|...++|+.+++.. + +..++. .+.+. +|+.+.+..+ ...++.. |.+.++|
T Consensus 76 ~F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccccccccccCc-c-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 466778888888765 2 444543 45665 7777777653 4445433 4444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.82 E-value=0.017 Score=31.09 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=6.1
Q ss_pred CCcEEEccCCCCcccC
Q 001849 113 YLRYLNLSGTEIRTLP 128 (1005)
Q Consensus 113 ~L~~L~Ls~n~i~~lp 128 (1005)
+|++|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.61 E-value=0.0015 Score=62.64 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=71.4
Q ss_pred ccccCCCccEEEecCCCCcccCccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCE
Q 001849 84 KLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHH 163 (1005)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (1005)
++..++..++||++.|++..+-..|..++.|..||++.|.|..+|..++.+..++.+++.. +.....|.++++++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence 3447778888888888888777778888888888888888888888888888888888877 557788888888888888
Q ss_pred EEccCCcc
Q 001849 164 LKNSNTKS 171 (1005)
Q Consensus 164 L~l~~n~~ 171 (1005)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 88888764
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.60 E-value=0.0019 Score=62.01 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=77.8
Q ss_pred CcccC-ccccCCCCCcEEEccCCCCcccChhhhcccccceeccccccccccchhhhcccCCCCEEEccCCcccccccccC
Q 001849 101 ILELP-DSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI 179 (1005)
Q Consensus 101 i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~p~~i 179 (1005)
+.++| ..+.....-.+||++.|++..+-..|+.++.|..||++. +.+..+|+.++.+..++++++..|. ....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44565 456778889999999999998888899999999999998 6799999999999999999999988 88999999
Q ss_pred Cccccccccee
Q 001849 180 GRLTCLQTLCS 190 (1005)
Q Consensus 180 ~~L~~L~~L~~ 190 (1005)
+++++++.++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99999988853
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.90 E-value=0.039 Score=29.69 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=11.6
Q ss_pred CCccEEEecCCCCcccC
Q 001849 89 QSLRVFSLRGYRILELP 105 (1005)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp 105 (1005)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998886
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.58 E-value=0.14 Score=46.70 Aligned_cols=102 Identities=13% Similarity=0.274 Sum_probs=62.5
Q ss_pred ccccccc-cCCCccEEEecCCCCcccC-ccccCCCCCcEEEccCCCCcccCh-hhhcccccceeccccccccccchh-hh
Q 001849 80 SMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCA-DM 155 (1005)
Q Consensus 80 ~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i 155 (1005)
.++...| +.++|+.+.+.. .+..++ .+|..+..|+.+.+.++ +..++. .|.+..+|+.+.+.+ ....++. .|
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 3456677 888999999985 677885 57889989999999885 888864 488888999999975 3444543 57
Q ss_pred cccCCCCEEEccCCccccccccc-CCcccccccc
Q 001849 156 GNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTL 188 (1005)
Q Consensus 156 ~~L~~L~~L~l~~n~~~~~~p~~-i~~L~~L~~L 188 (1005)
....+|+.+++..+ +..++.. +.+. +|+.+
T Consensus 78 ~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp TT-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred cccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence 77999999999765 4556544 6665 66655
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.07 E-value=0.13 Score=31.34 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=15.1
Q ss_pred CCCCcEEEccCCCCcccChh
Q 001849 111 LRYLRYLNLSGTEIRTLPES 130 (1005)
Q Consensus 111 L~~L~~L~Ls~n~i~~lp~~ 130 (1005)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46778888888888888764
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.07 E-value=0.13 Score=31.34 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=15.1
Q ss_pred CCCCcEEEccCCCCcccChh
Q 001849 111 LRYLRYLNLSGTEIRTLPES 130 (1005)
Q Consensus 111 L~~L~~L~Ls~n~i~~lp~~ 130 (1005)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46778888888888888764
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=0.034 Score=52.86 Aligned_cols=85 Identities=19% Similarity=0.373 Sum_probs=56.0
Q ss_pred CccceEEecCchhhhhhhhhcCccccccCccceeeeeccCCCccccC-CCCCCCCCCcccCCCCCcceeeecCCCCCccc
Q 001849 809 TNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFP-PKADDKGSGTVLPLPASLTYLRIEGFPNLERL 887 (1005)
Q Consensus 809 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 887 (1005)
..++.++-+++..+.... ..+.++++++.|.+.+|. .+.... +-.+ ...++|+.|+|++|+.|++-
T Consensus 101 ~~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck-~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCK-YFDDWCLERLG--------GLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred ceEEEEecCCchHHHHHH----HHHhccchhhhheecccc-chhhHHHHHhc--------ccccchheeeccCCCeechh
Confidence 456778888888777766 468888899999888864 221110 0000 24578888888888887763
Q ss_pred c-ccccCCCCcCeEecCCCC
Q 001849 888 T-SSIVDLQNLTGLVLGNCP 906 (1005)
Q Consensus 888 ~-~~~~~l~~L~~L~l~~c~ 906 (1005)
. .++..+++|+.|.+.+.+
T Consensus 168 GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHHHhhhhHHHHhcCch
Confidence 2 245667777777777744
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=0.024 Score=53.85 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=55.3
Q ss_pred ccccccccccccccccCccccCCCcccceeecccCCCCCcccCC---CCCCccceEEecCchhhhhhhhhcCccccccCc
Q 001849 762 AKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED---GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSS 838 (1005)
Q Consensus 762 ~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 838 (1005)
..++.+|-+++.+...--..+.+++.++.|.+.+|..+.+.... +..++|+.|+|++|+.++.... ..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhh
Confidence 35677777777765554456677788888888888776554322 3557888888888887766443 24566777
Q ss_pred cceeeeec
Q 001849 839 LRQLTIMN 846 (1005)
Q Consensus 839 L~~L~l~~ 846 (1005)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 77777665
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.20 E-value=0.46 Score=28.94 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCCccEEEecCCCCcccCccc
Q 001849 88 LQSLRVFSLRGYRILELPDSV 108 (1005)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~~ 108 (1005)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.20 E-value=0.46 Score=28.94 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCCccEEEecCCCCcccCccc
Q 001849 88 LQSLRVFSLRGYRILELPDSV 108 (1005)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~~ 108 (1005)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998543
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.95 E-value=1.6 Score=26.62 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=12.0
Q ss_pred CCCCcEEEccCCCCccc
Q 001849 111 LRYLRYLNLSGTEIRTL 127 (1005)
Q Consensus 111 L~~L~~L~Ls~n~i~~l 127 (1005)
+++|++|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45677777877777654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.90 E-value=1.4 Score=26.66 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=12.8
Q ss_pred CCcEEEccCCCCcccCh
Q 001849 113 YLRYLNLSGTEIRTLPE 129 (1005)
Q Consensus 113 ~L~~L~Ls~n~i~~lp~ 129 (1005)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777777777777775
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.36 E-value=2.5 Score=25.68 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=7.5
Q ss_pred CCcCeEecCCCCCCC
Q 001849 895 QNLTGLVLGNCPKLK 909 (1005)
Q Consensus 895 ~~L~~L~l~~c~~l~ 909 (1005)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 345555555555443
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=69.60 E-value=1.8 Score=25.66 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=6.0
Q ss_pred CCCcEEEccCCCCc
Q 001849 112 RYLRYLNLSGTEIR 125 (1005)
Q Consensus 112 ~~L~~L~Ls~n~i~ 125 (1005)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=61.46 E-value=0.13 Score=58.19 Aligned_cols=106 Identities=22% Similarity=0.216 Sum_probs=58.8
Q ss_pred ccEEEEcCCCChhh----HHHhccCCCCCceEEecCCCCcccc----cccccCC-CCccEEEeccCCCccc----CCCCC
Q 001849 692 LKLLLVWGCSKLES----IAEMLDNNTSLEKINISGCGNLQTL----PSGLHNL-CQLQEISIASCGNLVS----SPEGG 758 (1005)
Q Consensus 692 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~l~~l-~~L~~L~l~~~~~l~~----~~~~~ 758 (1005)
+..|.+.+|..... +...+.....|+.|++++|++...- -..+... ..|+.|++..|..... +....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67777777766543 3456777788888888887765321 1222222 5566677777643222 11122
Q ss_pred CCcccccccccccccccc----cCccccC----CCcccceeecccCC
Q 001849 759 LPCAKLAMLAIYNCKRLE----ALPKGLH----NLKSLQELRIGKGV 797 (1005)
Q Consensus 759 ~~~~~L~~L~l~~~~~l~----~~p~~~~----~l~~L~~L~l~~~~ 797 (1005)
.....++.++++.|.+.. .++..+. ...++++|++.+|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC
Confidence 235567777777776531 1122222 35566666666654
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.97 E-value=8.9 Score=23.81 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=9.5
Q ss_pred CCCcEEEccCCCCc
Q 001849 112 RYLRYLNLSGTEIR 125 (1005)
Q Consensus 112 ~~L~~L~Ls~n~i~ 125 (1005)
++|++|||++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777665
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.08 E-value=10 Score=42.59 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=22.6
Q ss_pred ccccEEeeccccCccccCccc--CCCCCccEEEEcCCCCccccC
Q 001849 525 ELLEYLRLSYCEGLVKLPQSS--LSLSSLREIEIYGCRSLVSFP 566 (1005)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~--~~l~~L~~L~l~~~~~l~~~~ 566 (1005)
|+|+.|+|++|.........+ .+...|++|.+.+|+..+.+.
T Consensus 244 pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred chhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 777777777762221111111 123456777777776665543
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=43.39 E-value=1 Score=51.06 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCccEEEEcCCCChhh----HHHhccCC-CCCceEEecCCCCccc----ccccccCCCCccEEEeccCCCccc-------
Q 001849 690 PSLKLLLVWGCSKLES----IAEMLDNN-TSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLVS------- 753 (1005)
Q Consensus 690 ~~L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~------- 753 (1005)
+.|+.|++++|.+... +-..+... ..|++|++..|..... +.+.+.....++.++++.|.....
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 4566666666655432 11222222 4455566666555433 233444456666666666643211
Q ss_pred -CCCCCCCcccccccccccccc
Q 001849 754 -SPEGGLPCAKLAMLAIYNCKR 774 (1005)
Q Consensus 754 -~~~~~~~~~~L~~L~l~~~~~ 774 (1005)
++..+....++++|++++|..
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~ 216 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGV 216 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCc
Confidence 111112244666666666653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.64 E-value=22 Score=40.05 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=16.5
Q ss_pred CCccEEEEcCCCCh--hhHHHhccCCCCCceEEecCC
Q 001849 690 PSLKLLLVWGCSKL--ESIAEMLDNNTSLEKINISGC 724 (1005)
Q Consensus 690 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~n 724 (1005)
+.+..+.|++|+.. +.+.......++|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 45666666666432 222223333444555555544
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.00 E-value=84 Score=22.00 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=10.8
Q ss_pred CCCCCCccccceeeecc
Q 001849 911 FPEKGLPSSLLQLSINR 927 (1005)
Q Consensus 911 l~~~~~~~sL~~L~i~~ 927 (1005)
+....+|++++.|.+.+
T Consensus 27 i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 27 IEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCCccCCCceEEEeeC
Confidence 44455777777777654
Done!