Query 001849
Match_columns 1005
No_of_seqs 437 out of 5256
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 16:34:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001849.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1145-1149//hhsearch_pdb/001849hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 444.7 30.5 676 59-953 50-766 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 411.8 29.8 628 88-931 49-717 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 348.6 45.3 229 690-931 381-622 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 343.8 39.9 206 690-911 405-625 (680)
5 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 323.5 30.0 99 89-188 32-133 (606)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 317.1 37.7 98 90-188 34-134 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 316.9 32.6 97 91-189 14-111 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 313.5 34.0 125 59-190 32-160 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 305.6 37.0 248 465-775 311-560 (844)
10 2z63_A TOLL-like receptor 4, v 1.0 1 1 285.5 29.4 105 691-796 348-455 (570)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=444.68 Aligned_cols=676 Identities=16% Similarity=0.082 Sum_probs=348.7
Q ss_pred CCEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCH--HHH
Q ss_conf 7420993243468999888756---331112699743999228998436911149897859974388774-3683--334
Q 001849 59 QHLRTFLPVILSNSKPGYLAPS---MLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIR-TLPE--SVS 132 (1005)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~-~lp~--~i~ 132 (1005)
.+++.|.+.+.. +.+. +++.+..+++|++++++.+.+..+|+.|+.+++|++|+|++|.+. .+|. .++
T Consensus 50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CCEEEEECCCCC------CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 927898778998------67755766965731680224678688867870332457889989898985787078967872
Q ss_pred CCCCCCEECCCCCCCCCCCHHHH-CCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 01355351223553110000310-05378988973588665433236---774233321102584565788931131221
Q 001849 133 KLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVG---IGRLTCLQTLCSFVVGKDSGSGLRELKLLT 208 (1005)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~L~~n~~~~~lp~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~l~ 208 (1005)
.+++|++|++++|......|..+ .++++|++|++++|.+.+..|.. ++.+++|++|
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L-------------------- 183 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL-------------------- 183 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE--------------------
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEE--------------------
T ss_conf 788999898968826774797785638899989897983588587155664358988989--------------------
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 45641398056565202233165303787876189996059999710344730027788788965059943389899833
Q 001849 209 QLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTW 288 (1005)
Q Consensus 209 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 288 (1005)
++++|.... .....
T Consensus 184 ----------------------------------~Ls~n~l~~-----------~~~~~--------------------- 197 (768)
T 3rgz_A 184 ----------------------------------AISGNKISG-----------DVDVS--------------------- 197 (768)
T ss_dssp ----------------------------------ECCSSEEES-----------CCBCT---------------------
T ss_pred ----------------------------------ECCCCCCCC-----------CCCCC---------------------
T ss_conf ----------------------------------897880346-----------57845---------------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 26899998009999458999988999998987669983888830208411389998899974468627775455446688
Q 001849 289 LGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHG 368 (1005)
Q Consensus 289 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 368 (1005)
.+++|++|++++|.+.+.++.++.+++|++|++++|.....+...+ ..+++|+.|.+.++. +.+..+
T Consensus 198 ----~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~n~-l~~~~~-- 264 (768)
T 3rgz_A 198 ----RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI------STCTELKLLNISSNQ-FVGPIP-- 264 (768)
T ss_dssp ----TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT------TTCSSCCEEECCSSC-CEESCC--
T ss_pred ----CCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH------HCCCCCCEEECCCCC-CCCCCC--
T ss_conf ----4786898989288278877111269999989794885878165777------448888989898886-657167--
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCC
Q ss_conf 88875558861388525586651358999997547998166482102788886409997058770362323677987740
Q 001849 369 SSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSV 448 (1005)
Q Consensus 369 ~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 448 (1005)
...+++|++|++++| .+++.+|..+ ...+++|+.|++.+|......
T Consensus 265 ----~~~l~~L~~L~L~~n-~l~~~ip~~~-----------------~~~~~~L~~L~Ls~n~l~~~~------------ 310 (768)
T 3rgz_A 265 ----PLPLKSLQYLSLAEN-KFTGEIPDFL-----------------SGACDTLTGLDLSGNHFYGAV------------ 310 (768)
T ss_dssp ----CCCCTTCCEEECCSS-EEEESCCCCS-----------------CTTCTTCSEEECCSSEEEECC------------
T ss_pred ----CCCCCCCCEEECCCC-CCCCCCCHHH-----------------HHHCCCCCEEECCCCCCCCCC------------
T ss_conf ----243687898979178-5577258888-----------------844686889989689677842------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 01058763002599899999850898255321002114578333479855899636998543403567878887520354
Q 001849 449 VCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLE 528 (1005)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~l~~~L~ 528 (1005)
...+..+++|+.|++++|.+.+. .+...+..+++|+.|++++| .+....+.. +..+.++|+
T Consensus 311 ------------p~~~~~l~~L~~L~L~~n~l~~~--ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~----l~~l~~~L~ 371 (768)
T 3rgz_A 311 ------------PPFFGSCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLSFN-EFSGELPES----LTNLSASLL 371 (768)
T ss_dssp ------------CGGGGGCTTCCEEECCSSEEEEE--CCHHHHTTCTTCCEEECCSS-EEEECCCTT----HHHHTTTCS
T ss_pred ------------CHHHHCCCCCCEEECCCCCCCCC--CCHHHHHCCCCCCEEECCCC-CCCCCCCHH----HHHHHCCCC
T ss_conf ------------36775587766778978852573--79788724888878848478-437623098----986322771
Q ss_pred EEEECCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCEEEE
Q ss_conf 7864046573435745578--88845899838999543599-87889886899815887788942100699999668988
Q 001849 529 YLRLSYCEGLVKLPQSSLS--LSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEI 605 (1005)
Q Consensus 529 ~L~l~~~~~l~~~~~~~~~--l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 605 (1005)
.|++++|...+.++..+.. +++|++|++++|.....+|. +..+++|+.|++++|.....++..+ ..+++|+.|++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L 449 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKL 449 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEEC
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCEEEC
T ss_conf 9986278747876766653324776189897784654248777568987989895884668546777--44998898989
Q ss_pred ECCCCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 279998734597-9989763686530389753332346001489877778753689806999742345798510000123
Q 001849 606 SGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (1005)
Q Consensus 606 ~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 684 (1005)
++|.....++.. ..+++|+.|++++|...+.++..
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-------------------------------------------- 485 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-------------------------------------------- 485 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--------------------------------------------
T ss_pred CCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHH--------------------------------------------
T ss_conf 788154718978828777329990199513758878--------------------------------------------
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 58998885579981899701178850378987628822777864334324699994499703579963389999883322
Q 001849 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL 764 (1005)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 764 (1005)
+.. .++|++|++++|...+.+|.+++.+++|+.|++++|...+.+|..+.++++|+.|++++|+..+.+|...+....+
T Consensus 486 l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 486 LSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHC-CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCH
T ss_conf 816-9989989753995189687688568999989897894337488777088989989898884688279578604212
Q ss_pred CCCCCCCCC----------------------CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCEEEECCCHH
Q ss_conf 331102353----------------------65557412577765451240557888866678-9888521587368113
Q 001849 765 AMLAIYNCK----------------------RLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNME 821 (1005)
Q Consensus 765 ~~L~l~~~~----------------------~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~ 821 (1005)
..+.+..+. ..+..+..+..++.++.+++..+..-..+|.. ...++|+.|++++|..
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 23201345421111344432222332221001355632320023211001133100462743340335665797858801
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 44666622864566675455652056798632699878889985457998864553138889851244555798868174
Q 001849 822 IWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLV 901 (1005)
Q Consensus 822 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~ 901 (1005)
....+ ..+..++.|+.|++++|. ....+|..++ .+++|+.|++++|...+.+|..+..++.|++|+
T Consensus 645 ~g~ip----~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~---------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 645 SGYIP----KEIGSMPYLFILNLGHND-ISGSIPDEVG---------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp BSCCC----GGGGGCTTCCEEECCSSC-CCSCCCGGGG---------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred CCCCC----HHHHCCCCCCEEECCCCC-CCCCCCHHHH---------CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 55587----788414157878486880-3887896784---------777899898978802386886775788789787
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCHH----HHHCCCCCCCCCCCCCCCEEE
Q ss_conf 1788888878988875534503103690047----754025798754547545469
Q 001849 902 LGNCPKLKYFPEKGLPSSLLQLSINRCPLIE----EKCRKDGGQYWDLLTHIPRVE 953 (1005)
Q Consensus 902 l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~i~~~~~~~ 953 (1005)
+++|+--+.+|..+...++....+.+||.|. ..|....+++|++|+|++.+.
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96881556089960102489777569832108877678887668889888765667
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=411.82 Aligned_cols=628 Identities=16% Similarity=0.081 Sum_probs=389.3
Q ss_pred CCCCCEEEECCCCCC-C---CCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCHH--HHCCCCCC
Q ss_conf 997439992289984-3---69111498978599743887743683334013553512235531100003--10053789
Q 001849 88 LQSLRVFSLRGYRIL-E---LPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKL 161 (1005)
Q Consensus 88 l~~Lr~L~L~~~~i~-~---lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L 161 (1005)
-.+++.|+|+++.+. . +|+++..+++|++++++.+.+..+|..|+.+++|++|++++|...+.+|. .++.+++|
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 99278987789986775576696573168022467868886787033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 889735886654332367-7423332110258456578893113122145641398056565202233165303787876
Q 001849 162 HHLKNSNTKSLEEMPVGI-GRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLK 240 (1005)
Q Consensus 162 ~~L~L~~n~~~~~lp~~i-~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 240 (1005)
++|++++|.....+|..+ +++++|++|++
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L-------------------------------------------------- 158 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDL-------------------------------------------------- 158 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEEC--------------------------------------------------
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEEC--------------------------------------------------
T ss_conf 989896882677479778563889998989--------------------------------------------------
Q ss_pred EEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC-CCC---CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 189996059999710344730027788788965059943389899-833---2689999800999945899998899999
Q 001849 241 ELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKF-PTW---LGDSSFSKLVTLKFKNCDMCTALPSVGQ 316 (1005)
Q Consensus 241 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~---~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 316 (1005)
++|. .... |.. +. .+++|++|++++|.+.+..+ +..
T Consensus 159 ----s~n~---------------------------------l~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~-~~~ 198 (768)
T 3rgz_A 159 ----SANS---------------------------------ISGANVVGWVLSD--GCGELKHLAISGNKISGDVD-VSR 198 (768)
T ss_dssp ----CSSC---------------------------------CEEETHHHHHHTT--CCTTCCEEECCSSEEESCCB-CTT
T ss_pred ----CCCC---------------------------------CCCCCCHHHHHHC--CCCCCCEEECCCCCCCCCCC-CCC
T ss_conf ----7983---------------------------------5885871556643--58988989897880346578-454
Q ss_pred CCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 89876699838888302084113899988999744686277754554466888887555886138852558665135899
Q 001849 317 LPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPE 396 (1005)
Q Consensus 317 l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 396 (1005)
+++|++|++++|.....+.. + ..+++|+.|.+.++. +.+..+. ....+++|++|++++| .+.+.+|.
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~--l-----~~l~~L~~L~Ls~n~-l~~~~~~----~l~~l~~L~~L~Ls~n-~l~~~~~~ 265 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF--L-----GDCSALQHLDISGNK-LSGDFSR----AISTCTELKLLNISSN-QFVGPIPP 265 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB--C-----TTCCSCCEEECCSSC-CCSCHHH----HTTTCSSCCEEECCSS-CCEESCCC
T ss_pred CCCCCEEECCCCCCCCCCCC--C-----CCCCCCCEEECCCCC-CCCCCCH----HHHCCCCCCEEECCCC-CCCCCCCC
T ss_conf 78689898928827887711--1-----269999989794885-8781657----7744888898989888-66571672
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 99975479981664821027888864099970587703623236779877400105876300259989999985089825
Q 001849 397 HLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILS 476 (1005)
Q Consensus 397 ~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 476 (1005)
..+++|+.|++.+|..... ....+...+++|+.|+++
T Consensus 266 --------------------~~l~~L~~L~L~~n~l~~~-----------------------ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 266 --------------------LPLKSLQYLSLAENKFTGE-----------------------IPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp --------------------CCCTTCCEEECCSSEEEES-----------------------CCCCSCTTCTTCSEEECC
T ss_pred --------------------CCCCCCCEEECCCCCCCCC-----------------------CCHHHHHHCCCCCEEECC
T ss_conf --------------------4368789897917855772-----------------------588888446868899896
Q ss_pred CCCCCEEECCCCCCCCCCCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-CCCEE
Q ss_conf 532100211457833347985589963699854-3403567878887520354786404657343574557888-84589
Q 001849 477 TKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQ-SLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLS-SLREI 554 (1005)
Q Consensus 477 ~n~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~~l~~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L 554 (1005)
+|.+.+. .+..+..+++|+.|++++| .+. .++... +..+ ++|++|++++|...+.+|..+..++ +|+.|
T Consensus 303 ~n~l~~~---~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~----l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 303 GNHFYGA---VPPFFGSCSLLESLALSSN-NFSGELPMDT----LLKM-RGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp SSEEEEC---CCGGGGGCTTCCEEECCSS-EEEEECCHHH----HTTC-TTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CCCCCCC---CCHHHHCCCCCCEEECCCC-CCCCCCCHHH----HHCC-CCCCEEECCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 8967784---2367755877667789788-5257379788----7248-8887884847843762309898632277199
Q ss_pred EECCCCCCCCCCC-CCC--CCCCCEEEECCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCEEEEEE
Q ss_conf 9838999543599-878--89886899815887788942100699999668988279998734597-9989763686530
Q 001849 555 EIYGCRSLVSFPE-VAL--PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSLKRLKICH 630 (1005)
Q Consensus 555 ~L~~~~~l~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~ 630 (1005)
++++|.....++. ... +++|+.|++++|.....++..+ ..+++|+.|++++|.....++.. ..+++|+.|++++
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG--GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 86278747876766653324776189897784654248777--5689879898958846685467774499889898978
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHC
Q ss_conf 38975333234600148987777875368980699974234579851000012358998885579981899701178850
Q 001849 631 CDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEML 710 (1005)
Q Consensus 631 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~ 710 (1005)
|...+.++.. +.. .++|++|++++|...+.+|..+
T Consensus 452 n~l~~~~p~~--------------------------------------------~~~-l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 452 NMLEGEIPQE--------------------------------------------LMY-VKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp SCCCSCCCGG--------------------------------------------GGG-CTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCCCCCCHH--------------------------------------------HCC-CCCCEEEEECCCCCCCCCCHHH
T ss_conf 8154718978--------------------------------------------828-7773299901995137588788
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 37898762882277786433432469999449970357996338999988332233110235365557412577765451
Q 001849 711 DNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQE 790 (1005)
Q Consensus 711 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~ 790 (1005)
..+++|+.|++++|...+.+|..++.+++|++|++++|...+.+|.....+++|+.|++++|+..+.+|..+.....+..
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHH
T ss_conf 16998998975399518968768856899998989789433748877708898998989888468827957860421223
Q ss_pred EECCCCCCCCCCCCC-----------------------CCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 240557888866678-----------------------988852158736811344666622864566675455652056
Q 001849 791 LRIGKGVALPSLEED-----------------------GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC 847 (1005)
Q Consensus 791 L~l~~~~~l~~~~~~-----------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 847 (1005)
+.+..+.....+... ...+.+..+++..+......+ ..+..+++|+.|++++|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~----~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS----PTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC----CSCSSSBCCCEEECCSS
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCC----HHHHCCCCCCEEECCCC
T ss_conf 20134542111134443222233222100135563232002321100113310046274----33403356657978588
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCEEEEC
Q ss_conf 7986326998788899854579988645531388898512445557988681741788888878988-875534503103
Q 001849 848 DDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEK-GLPSSLLQLSIN 926 (1005)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~ 926 (1005)
. ....+|..++ .+++|+.|++++|...+.+|..+.++++|+.|++++|.--..+|.. +..++|++|+++
T Consensus 643 ~-l~g~ip~~l~---------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 643 M-LSGYIPKEIG---------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp C-CBSCCCGGGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred C-CCCCCCHHHH---------CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 0-1555877884---------14157878486880388789678477789989897880238688677578878978796
Q ss_pred CCCCH
Q ss_conf 69004
Q 001849 927 RCPLI 931 (1005)
Q Consensus 927 ~c~~l 931 (1005)
+|+.-
T Consensus 713 ~N~l~ 717 (768)
T 3rgz_A 713 NNNLS 717 (768)
T ss_dssp SSEEE
T ss_pred CCCCC
T ss_conf 88155
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=348.57 Aligned_cols=229 Identities=16% Similarity=0.106 Sum_probs=138.5
Q ss_pred CCCCEEEECCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 885579981899701178850378987628822777864334-3246999944997035799633899998833223311
Q 001849 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (1005)
Q Consensus 690 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 768 (1005)
++|+.|++++|......+.++..+++|+.|++++|...+.++ ..+.++++|++|++++|......+..+..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCH
T ss_conf 86766889999777677544207788888867787575435755325754612784489975422764550075431011
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCEEEECCCHHHHHHHHH----CCCCCCCCCCCC
Q ss_conf 0235365--557412577765451240557888866678--98885215873681134466662----286456667545
Q 001849 769 IYNCKRL--EALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIE----RGRGFHRFSSLR 840 (1005)
Q Consensus 769 l~~~~~l--~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~l~~L~ 840 (1005)
+++|... +.+|..+..+++|+.|++++| .++.++.. ...++|++|++++|......... ....+.++++|+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCC
T ss_conf 014644225667764555787899989999-8776794463455346888588997300000004677414233799888
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCC---
Q ss_conf 56520567986326998788899854579988645531388898512445-55798868174178888887898887---
Q 001849 841 QLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSS-IVDLQNLTGLVLGNCPKLKYFPEKGL--- 916 (1005)
Q Consensus 841 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~--- 916 (1005)
.|++++|. +..+|... +..+++|+.|++++ +.++.+|.. +..+++|+.|++++| +++.+++..+
T Consensus 540 ~L~L~~N~--l~~i~~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 540 ILNLESNG--FDEIPVEV--------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPA 607 (680)
T ss_dssp EEECCSSC--CCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHH
T ss_pred EEECCCCC--CCCCCHHH--------CCCCCCCCEEECCC-CCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCC
T ss_conf 88899997--88779777--------34666752238999-9777679768378988888989999-6870596683011
Q ss_pred CCCCCEEEECCCCCH
Q ss_conf 553450310369004
Q 001849 917 PSSLLQLSINRCPLI 931 (1005)
Q Consensus 917 ~~~L~~L~i~~c~~l 931 (1005)
.++|+.+++++||..
T Consensus 608 ~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 608 FRNLTELDMRFNPFD 622 (680)
T ss_dssp HTTCSEEECTTCCCC
T ss_pred CCCCCEEECCCCCCC
T ss_conf 466577983189702
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=343.85 Aligned_cols=206 Identities=17% Similarity=0.093 Sum_probs=104.9
Q ss_pred CCCCEEEECCCCCHHHHH-HHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 885579981899701178-85037898762882277786433432469999449970357996--338999988332233
Q 001849 690 PSLKLLLVWGCSKLESIA-EMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNL--VSSPEGGLPCAKLAM 766 (1005)
Q Consensus 690 ~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~ 766 (1005)
++|+.|++++|.....++ ..+.++++|+.|++++|......+..+..+++|+.|++++|... ..+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 88888867787575435755325754612784489975422764550075431011014644225667764555787899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC----------CCCCCCCCEEEECCCHHHHHHHHHCCCCCCCC
Q ss_conf 11023536555741257776545124055788886667----------89888521587368113446666228645666
Q 001849 767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEE----------DGLPTNLHVLLINGNMEIWKSMIERGRGFHRF 836 (1005)
Q Consensus 767 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~----------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l 836 (1005)
|++++|......+..+.++++|++|++++|. ++.++. ....++|++|++++|.....+. ..+.++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l 559 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDL 559 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT----TTTTTC
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCH----HHCCCC
T ss_conf 9899998776794463455346888588997-30000000467741423379988888899997887797----773466
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CC-CCCCCCEEECCCCCCCCCC
Q ss_conf 754556520567986326998788899854579988645531388898512445-55-7988681741788888878
Q 001849 837 SSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSS-IV-DLQNLTGLVLGNCPKLKYF 911 (1005)
Q Consensus 837 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~-~l~~L~~L~l~~c~~l~~l 911 (1005)
++|+.|++++|. +..+|.... ..+++|+.|++++| .++.++.. +. .+++|+++++++||..-+-
T Consensus 560 ~~L~~L~Ls~N~--l~~l~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 560 FELKIIDLGLNN--LNTLPASVF--------NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCCEEECCSSC--CCCCCTTTT--------TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCEEECCCCC--CCCCCHHHH--------CCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 675223899997--776797683--------78988888989999-6870596683011466577983189702577
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=323.53 Aligned_cols=99 Identities=26% Similarity=0.296 Sum_probs=41.3
Q ss_pred CCCCEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEECCCCCCCCCCCHHHHCCCCCCCEEEC
Q ss_conf 97439992289984369-1114989785997438877436-833340135535122355311000031005378988973
Q 001849 89 QSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN 166 (1005)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 166 (1005)
+++++|++++|.+..++ ..|.++++|++|++++|.++.+ |..|+++++|++|++++|......|..++.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 5886654332-367742333211
Q 001849 167 SNTKSLEEMP-VGIGRLTCLQTL 188 (1005)
Q Consensus 167 ~~n~~~~~lp-~~i~~L~~L~~L 188 (1005)
++|. +..++ ..++++++|++|
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKL 133 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEE
T ss_pred CCCC-CCCCCCCCCCCCCCCCEE
T ss_conf 3775-554451134898877989
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=317.11 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=59.0
Q ss_pred CCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEECCCCCCCCCCCHHHHCCCCCCCEEECC
Q ss_conf 743999228998436-91114989785997438877436-8333401355351223553110000310053789889735
Q 001849 90 SLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS 167 (1005)
Q Consensus 90 ~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~ 167 (1005)
.+++|++++|.++.+ |..|+++++|++|++++|.+..+ |..|+++++|++|++++|......|..++.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 88665433-2367742333211
Q 001849 168 NTKSLEEM-PVGIGRLTCLQTL 188 (1005)
Q Consensus 168 ~n~~~~~l-p~~i~~L~~L~~L 188 (1005)
+|. +..+ |..++.+++|++|
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEE
T ss_pred CCC-CCCCCCCHHCCCCCCCEE
T ss_conf 267-665781012237822389
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=316.93 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
Q ss_conf 4399922899843691114989785997438877436-833340135535122355311000031005378988973588
Q 001849 91 LRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT 169 (1005)
Q Consensus 91 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~n 169 (1005)
-+.+++++..++.+|..+.. .+++|++++|.++.+ |..|+++++|++|++++|......|..|+.+++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 72377777980628677898--6758981587347179667256766528978898355248511368433676448898
Q ss_pred CCCCCCCCCCCCCCCCCCCE
Q ss_conf 66543323677423332110
Q 001849 170 KSLEEMPVGIGRLTCLQTLC 189 (1005)
Q Consensus 170 ~~~~~lp~~i~~L~~L~~L~ 189 (1005)
......|..++.+++|++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEE
T ss_pred CCCCCCHHHHCCCCCCCEEE
T ss_conf 56545865523442153765
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=313.49 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=74.7
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCC
Q ss_conf 7420993243468999888756331112-699743999228998436-91114989785997438877436-83334013
Q 001849 59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVSKLY 135 (1005)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~ 135 (1005)
+++++|.+.++. ...+++..+ ++++|++|++++|.+..+ |..|+++++|++|++++|.++.+ |..|++++
T Consensus 32 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNP-------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCEEECCCCC-------CCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCC
T ss_conf 876788788897-------5773754555776674886887736643977730601068867879856304852207865
Q ss_pred CCCEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCEE
Q ss_conf 55351223553110000310053789889735886654-33236774233321102
Q 001849 136 NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLE-EMPVGIGRLTCLQTLCS 190 (1005)
Q Consensus 136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~L~~L~~L~~ 190 (1005)
+|++|++++|......|..++.+++|++|++++|.... .+|..++++++|++|++
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEEC
T ss_conf 37888703775554451134898877989687885232530686732677778876
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=305.57 Aligned_cols=248 Identities=16% Similarity=0.118 Sum_probs=105.4
Q ss_pred CCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 99998508982553210021145783334798558996369985434035678788875203547864046573435745
Q 001849 465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS 544 (1005)
Q Consensus 465 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~l~~~L~~L~l~~~~~l~~~~~~ 544 (1005)
..+++|+.|++++|.+..+ .+..+..+++|+.|++++ +.+..+....+ ..+ ++|+.|++++|... .+
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~----~~l-~~L~~L~Ls~N~l~-~i--- 377 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGEL---YSSNFYGLPKVAYIDLQK-NHIAIIQDQTF----KFL-EKLQTLDLRDNALT-TI--- 377 (844)
T ss_dssp TTCSSCCEEEEESCCCSCC---CSCSCSSCTTCCEEECCS-CCCCCCCSSCS----CSC-CCCCEEEEETCCSC-CC---
T ss_pred CCCCCCCEEECCCCCCCCC---CHHHHCCCCCCCEEECCC-CCCCCCCHHHH----CCC-CCCCEEECCCCCCC-CC---
T ss_conf 6888999898989978851---878846899999898989-98776286661----378-88999889899778-61---
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCC--CCCCCC
Q ss_conf 578888458998389995435998788988689981588778894210069999966898827999873459--799897
Q 001849 545 SLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAG--VQLPPS 622 (1005)
Q Consensus 545 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~ 622 (1005)
..+++|+.+.+++|. +..++.. ..+++.+++++|. +..++...+...+++|+.|++++|......+. ...+++
T Consensus 378 -~~~~~L~~L~l~~N~-l~~l~~~--~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 452 (844)
T 3j0a_A 378 -HFIPSIPDIFLSGNK-LVTLPKI--NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452 (844)
T ss_dssp -SSCCSCSEEEEESCC-CCCCCCC--CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred -CCCCCCCHHCCCCCC-CCCCCCC--CCCCCEEECCCCC-CCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf -688982320058997-2314554--5543122145675-3457556665127766666677871255554333566873
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 63686530389753332346001489877778753689806999742345798510000123589988855799818997
Q 001849 623 LKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSK 702 (1005)
Q Consensus 623 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~ 702 (1005)
|+.|++++|.. ...+. ....+. .+.. .++|+.|++++|..
T Consensus 453 L~~L~Ls~N~l-~~~~~---------------------------------~~~~~~-----~~~~-l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 453 LEQLFLGENML-QLAWE---------------------------------TELCWD-----VFEG-LSHLQVLYLNHNYL 492 (844)
T ss_dssp CCBCEEESCCC-SSSCC---------------------------------SCCCSS-----CSSC-BCCEECCCCCHHHH
T ss_pred CCCCCCCCCCC-CCCCC---------------------------------CCCCHH-----HHCC-CCCCCEEECCCCCC
T ss_conf 10024777736-44101---------------------------------355355-----5447-55365777889856
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0117885037898762882277786433432469999449970357996338999988332233110235365
Q 001849 703 LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRL 775 (1005)
Q Consensus 703 l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 775 (1005)
....+..+.++++|+.|++++|......+..+. ++|+.|++++|...+..|. . +++|+.+++++|+..
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~-~--~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD-V--FVSLSVLDITHNKFI 560 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC-C--CSSCCEEEEEEECCC
T ss_pred CCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHH-H--HCCCCEEEECCCCCC
T ss_conf 553955704501221569999978745710110--0455888988847888966-8--377688993199702
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=285.45 Aligned_cols=105 Identities=21% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCCEEEECCCCCHHHH--HHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 8557998189970117--8850378987628822777864334324699994499703579963389-999883322331
Q 001849 691 SLKLLLVWGCSKLESI--AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSP-EGGLPCAKLAML 767 (1005)
Q Consensus 691 ~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L 767 (1005)
+|++|++++|...... +..+..+++|+.|++++|...... ..+..+++|++|++++|......+ ..+..+++|+.|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEE
T ss_conf 778796769956754654433355676677989899652132-0002568887897458864556435666047888889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 10235365557412577765451240557
Q 001849 768 AIYNCKRLEALPKGLHNLKSLQELRIGKG 796 (1005)
Q Consensus 768 ~l~~~~~l~~~p~~~~~l~~L~~L~l~~~ 796 (1005)
++++|...+..|..+.++++|++|++++|
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred ECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 68698366642556636874748988698
Done!