Query 001850
Match_columns 1005
No_of_seqs 268 out of 1256
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 10:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 1E-235 2E-240 1960.2 78.2 950 30-1005 26-993 (996)
2 PLN02701 alpha-mannosidase 100.0 3E-181 6E-186 1660.1 92.9 918 26-1005 26-1049(1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 5E-162 1E-166 1365.1 59.9 901 27-1004 149-1127(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 2E-105 5E-110 996.8 78.9 824 40-1004 3-875 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 1.3E-79 2.7E-84 668.8 42.2 700 38-921 278-1018(1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 1.4E-59 3.1E-64 515.1 24.7 270 42-353 1-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 8.5E-51 1.8E-55 497.9 31.3 715 41-1005 198-943 (943)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 5.5E-44 1.2E-48 422.5 37.9 424 490-1002 1-457 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.8 1.8E-21 3.9E-26 169.9 1.1 75 358-432 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 7.5E-20 1.6E-24 159.2 5.3 74 359-432 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.7 1.8E-19 4E-24 222.4 -1.4 354 39-434 2-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 98.4 1.7E-06 3.6E-11 98.9 11.2 121 75-197 28-195 (360)
13 COG1543 Uncharacterized conser 96.0 0.021 4.6E-07 64.3 8.5 122 73-196 75-207 (504)
14 PF01522 Polysacc_deac_1: Poly 95.6 0.12 2.7E-06 48.8 11.2 103 77-192 18-122 (123)
15 COG1449 Alpha-amylase/alpha-ma 94.4 1.2 2.5E-05 54.3 17.2 97 94-192 162-262 (615)
16 TIGR03212 uraD_N-term-dom puta 93.9 5.1 0.00011 44.3 19.5 111 75-199 75-187 (297)
17 TIGR02764 spore_ybaN_pdaB poly 93.6 0.47 1E-05 48.9 10.4 101 80-193 22-124 (191)
18 TIGR02884 spore_pdaA delta-lac 93.1 0.52 1.1E-05 50.0 9.8 101 81-193 54-156 (224)
19 TIGR03006 pepcterm_polyde poly 90.4 2.2 4.7E-05 46.5 11.0 111 74-196 25-139 (265)
20 PRK14582 pgaB outer membrane N 89.9 45 0.00098 41.1 22.6 151 115-319 168-347 (671)
21 TIGR02873 spore_ylxY probable 89.3 3.1 6.6E-05 45.4 11.2 101 79-192 100-202 (268)
22 PRK14581 hmsF outer membrane N 86.1 3.6 7.7E-05 50.4 10.1 81 114-197 167-275 (672)
23 PRK15394 4-deoxy-4-formamido-L 71.5 1.7E+02 0.0037 32.4 16.9 81 115-199 92-176 (296)
24 PF07481 DUF1521: Domain of Un 69.4 37 0.00081 33.2 9.2 95 599-705 8-103 (171)
25 PF08672 APC2: Anaphase promot 58.7 9.9 0.00022 31.0 2.8 23 111-133 36-58 (60)
26 TIGR03826 YvyF flagellar opero 52.5 12 0.00026 36.1 2.8 52 74-132 27-78 (137)
27 PF12395 DUF3658: Protein of u 37.2 46 0.001 30.9 4.1 69 42-137 40-108 (111)
28 PF06044 DRP: Dam-replacing fa 29.9 92 0.002 32.9 5.1 102 24-132 135-249 (254)
29 PF02929 Bgal_small_N: Beta ga 28.9 4.4E+02 0.0095 28.8 10.7 47 603-651 2-49 (276)
30 PRK12465 xylose isomerase; Pro 28.9 89 0.0019 35.8 5.2 65 263-332 85-154 (445)
31 TIGR03593 yidC_nterm membrane 26.9 4.2E+02 0.0091 30.2 10.7 28 599-626 74-101 (366)
32 PF14849 YidC_periplas: YidC p 26.8 2.6E+02 0.0057 30.2 8.6 25 601-625 2-26 (270)
33 PRK10148 hypothetical protein; 25.9 25 0.00054 34.5 0.3 18 165-182 123-140 (147)
34 COG0726 CDA1 Predicted xylanas 23.8 5.1E+02 0.011 27.2 10.3 115 53-191 65-181 (267)
35 PHA03393 odv-e66 occlusion-der 22.4 1.9E+02 0.004 35.7 6.6 110 54-185 54-175 (682)
36 PF10074 DUF2285: Uncharacteri 22.3 16 0.00035 33.6 -1.7 27 104-133 75-101 (106)
37 PF01479 S4: S4 domain; Inter 21.3 1E+02 0.0022 23.5 2.8 31 104-135 5-36 (48)
38 PF08220 HTH_DeoR: DeoR-like h 20.9 4.2E+02 0.0092 21.1 6.5 53 81-138 4-56 (57)
39 PTZ00150 phosphoglucomutase-2- 20.7 3.1E+02 0.0066 33.7 8.3 95 103-198 10-126 (584)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-235 Score=1960.16 Aligned_cols=950 Identities=50% Similarity=0.841 Sum_probs=869.1
Q ss_pred ecCCCCccCCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhc
Q 001850 30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQ 109 (1005)
Q Consensus 30 ~~~~~~~~~~~~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~ 109 (1005)
|++|+...+++++||||||||+|+|||||+||||+|++|.||++.|++|||+||++|.+||+|||+++|++||.+||++|
T Consensus 26 y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~q 105 (996)
T KOG1959|consen 26 YNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQ 105 (996)
T ss_pred cCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcC--CCCceeeecCCCCCChhhHHHHhhh
Q 001850 110 SPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFN--KTPKAGWQIDPFGHSAVQAYLLGVE 187 (1005)
Q Consensus 110 ~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG--~~p~v~w~iD~FGhs~~~p~ll~~~ 187 (1005)
++++|+.||+||++|||||+||||||||||++||.|+||||+.||+||.++|| .+|++||||||||||+.||+||+ +
T Consensus 106 S~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfA-q 184 (996)
T KOG1959|consen 106 SETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFA-Q 184 (996)
T ss_pred CHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999999999999 79999999999999999999996 9
Q ss_pred cCCcEEEEeccCHHHHHhhhhcCCceeEEecCCCCCCCCceeEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHH
Q 001850 188 LGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQ 267 (1005)
Q Consensus 188 ~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~ 267 (1005)
|||++.+|+||||+||+.|..++.|||+|+|++++|++++|||++||.||++|+|||||..|.+.|++|+|.+.++||++
T Consensus 185 mGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~NVke 264 (996)
T KOG1959|consen 185 MGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYNVKE 264 (996)
T ss_pred hCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhc---CC-ceeEEEcChhhHHHHHHhcCCCCC
Q 001850 268 WVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK---GG-RVNALYSTPSLYTEAKNAANGPWP 343 (1005)
Q Consensus 268 ~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~---~~-~~~i~~sT~~~Yf~~v~~~~~~~p 343 (1005)
|++.|++..+.++.+|+|||||+|||+||+|.+|..||+||||||+|+|+ .+ ++++.||||+||++++|+.+..||
T Consensus 265 rVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp 344 (996)
T KOG1959|consen 265 RVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWP 344 (996)
T ss_pred HHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999994 34 899999999999999999999999
Q ss_pred CccCCCccccccCCCceeeeeecccchhhHHHHhhhHHHHHHHHHHhhCCCC--CCCchHHHHHHHHhhccccCCCCCCc
Q 001850 344 LKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKS--PGPTTSALGDALGIAQHHDAVTGTAK 421 (1005)
Q Consensus 344 ~~~gDf~py~~~~~~ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~~l~~~~~--~~~~~~~l~~~l~~~QhHDaItGTs~ 421 (1005)
+++.|||||++++++||||||||||.+|++.|+++++|++|+||+++++... ..+.++.|+++|+++|||||||||+|
T Consensus 345 ~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTek 424 (996)
T KOG1959|consen 345 VKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTEK 424 (996)
T ss_pred ccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccch
Confidence 9999999999999999999999999999999999999999999999998654 55788999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccCcccccCCCCCCCCCCCCeEEEEEEcCCCce
Q 001850 422 QHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWN 501 (1005)
Q Consensus 422 ~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~ 501 (1005)
++|.+||.++|..|+-.|+.+++++|+.|.... ...|++|.+||+|+||.+++ .++++.|++||||+|.
T Consensus 425 q~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~~ 493 (996)
T KOG1959|consen 425 QHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAHT 493 (996)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcce
Confidence 999999999999999999999999999998643 34789999999999999863 3678999999999999
Q ss_pred eeEEEEEEecCCcEEEECCCCCeEeEEEeecccccccccchhhhhccCCCCCCCCcEEEEEEEecCCCceEEEEEEecCC
Q 001850 502 RTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAG 581 (1005)
Q Consensus 502 r~~~V~i~v~~~~v~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~ 581 (1005)
++++|+|||..+++.|+|+.|++|++|++|.......+. .......++|+|.|.|||+|+++|.|+...+
T Consensus 494 ~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~eLvf~asvpplg~aty~i~k~~~ 563 (996)
T KOG1959|consen 494 VTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHELVFKASVPPLGIATYFIKKVAS 563 (996)
T ss_pred eeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCceEEEEEEecCccceEEEEeecCc
Confidence 999999999999999999999999999999976544332 1234467999999999999999999996544
Q ss_pred cccccccceeccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCCeEEeeeEEEEEeeccC---CCCCCCcceEecCC
Q 001850 582 KVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMV---DTQSSGAYIFRPNG 658 (1005)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~---~~~~sgAY~f~P~~ 658 (1005)
......+..............|+|+++++.||.++|.++++....+|.+..+.|.|.+|.++. +.+.||||+|+| +
T Consensus 564 ~~~~~~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n~~q~SgAYiFRp-~ 642 (996)
T KOG1959|consen 564 TERGSASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFGYYKGYRGDNDKQASGAYIFRP-G 642 (996)
T ss_pred ccccccccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeEEEEeecCCcCCccCcceEecC-C
Confidence 322111111111112233489999999999998899999999888999999999999999766 247899999999 5
Q ss_pred CcccccC-CCccEEEEecCceEEEEEEecceEEEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEeeecCCcEEEE
Q 001850 659 AQPNVVS-RSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYT 737 (1005)
Q Consensus 659 ~~~~~~~-~~~~i~v~~Gpl~~~v~~~~~~~i~q~vrL~~~~~~ie~e~~v~~ip~~~~~~~e~~~rf~t~i~s~~~fyT 737 (1005)
...+++. ....++|+.|||+.||++.++.|++|.+|+|+|.+++|+||.|||||++|..|||+++||+|+|.|++.|||
T Consensus 643 ~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYT 722 (996)
T KOG1959|consen 643 QADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFYT 722 (996)
T ss_pred CCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEEe
Confidence 4444443 357889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeecccccccccccCCCCCcccceEeecceEEEeeCCceEEEEecCCcceeeccCcEEEEEEEeeeccCCCCcc
Q 001850 738 DSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGV 817 (1005)
Q Consensus 738 DsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvltdr~~G~~sl~~G~iElmL~Rr~~~DD~rGv 817 (1005)
||||+||+||.+++|++|....++|++||||||++.|||+|++.+|+|||||+|||+|++||+||||||||++.||+|||
T Consensus 723 DSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL~DRAqGgsSl~dG~lElMLHRRl~~DD~~Gv 802 (996)
T KOG1959|consen 723 DSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVLNDRAQGGSSLKDGQLELMLHRRLLNDDGRGV 802 (996)
T ss_pred cCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEEeecccCCccccCCeEEEEeeehhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCeeEeeeEEEeccccCccc-hhcccchhhhcccceeeeeccccccccccccCccccCccCCCCCC
Q 001850 818 GEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGA-RWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPL 896 (1005)
Q Consensus 818 ge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~-~~~r~~~~~l~~p~~~~f~~~~~~~~~~~~~~~~~~l~~~~~lp~ 896 (1005)
||+|||+.|+ ..||.+||+|++.|+..+..+ .++|..+++++.|.+.+|++.....+........+.+..++.||.
T Consensus 803 ~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~~~~f~~~~~~~~~~~~s~~~~~f~~~~~lP~ 879 (996)
T KOG1959|consen 803 GEALNETVYG---HAGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPLWKFFSKPEGGEALNSLSIPGSAFSGSYDLPQ 879 (996)
T ss_pred chhccccccc---ccceEEeeeEEEEEecccccchhhhhhhhhhcccHHHHHhhcCCCccchhhcCCCccccccccCCCc
Confidence 9999999986 279999999999999888775 778999999999999999877654444333333333444568999
Q ss_pred cceEEEeeecCCCcEEEEEecccccCCCCCCceeeeeehhhhccccccceeeecccccccchhhccceeeeee-CC---C
Q 001850 897 NVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVE-GE---S 972 (1005)
Q Consensus 897 nv~lltl~~~~~~~illRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~i~~i~EtsLt~~~~~~~~~r~~w~~~-~~---~ 972 (1005)
+||||||++|+++.+||||+|+|++|||+++|++++|+|.+||..+++..|+||||+||+++++|+|++|..+ .+ .
T Consensus 880 ~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvsfnl~~lf~~~~i~~i~EttL~gN~~ls~mkr~k~~~~~~G~~~~ 959 (996)
T KOG1959|consen 880 SVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVSFNLRKLFSALDIVEIRETTLDGNQPLSDMKRFKFHWDVSGEKPS 959 (996)
T ss_pred ceeeeecccCCCCceEeeehhhhhcccccccCcceEEEhHHhhcccCeeEEEEeeccCccChhhhhhhccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888776 33 1
Q ss_pred CCcCCCCCCCCCCC-CCceEEecCCceeEEEEEC
Q 001850 973 GKTHSPVRGGPLDA-STLVVELGPMEIRTFLLKF 1005 (1005)
Q Consensus 973 ~~~~~~~~~~~~~~-~~~~i~l~PmeIrTf~v~~ 1005 (1005)
+....+.+..|+++ +.+.|+|.|||||||+|++
T Consensus 960 ~~~~~~s~~~p~~~~~~~~vtL~PmeIRTfii~~ 993 (996)
T KOG1959|consen 960 GVEYSTSRHKPLDKTSEFIVTLHPMEIRTFIIKF 993 (996)
T ss_pred CccccccCCCCCCcccceEEEEeccEEEEEEEEE
Confidence 22334445566664 5689999999999999974
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=2.8e-181 Score=1660.09 Aligned_cols=918 Identities=29% Similarity=0.504 Sum_probs=765.5
Q ss_pred eeeeecCCCCccCCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHH
Q 001850 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRW 105 (1005)
Q Consensus 26 ~~~~~~~~~~~~~~~~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~w 105 (1005)
=.+.|+...+. +++++||||||||||+|||||++|||. +.+++||++||+.|++||+|||+|+|++||++|
T Consensus 26 ~~~~y~~~~~~-~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~W 96 (1050)
T PLN02701 26 WRVKYRGDEWD-REKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLERW 96 (1050)
T ss_pred cceeecccccC-CcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHHHH
Confidence 34447766655 788999999999999999999999997 899999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHh
Q 001850 106 WVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLG 185 (1005)
Q Consensus 106 w~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~ 185 (1005)
|++++|+++++||+||++||||||||||||+|||++|||+|||||++||+|++++||+.|++||+|||||||++||+||+
T Consensus 97 w~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~Ll~ 176 (1050)
T PLN02701 97 WRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYLLR 176 (1050)
T ss_pred HHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCcEEEEeccCHHHHHhhhhcCCceeEEecCCCCCCCCceeEeecCC-CC------CCCCCCC--cccCC------C
Q 001850 186 VELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPV-HY------SPPSGFH--FELTD------D 250 (1005)
Q Consensus 186 ~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~-~Y------~~p~~f~--f~~~~------~ 250 (1005)
+|||++++|+|++|++|..|..++.+||+|+++++...|++||||+||. +| ++|++|| ||..+ .
T Consensus 177 -~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~ 255 (1050)
T PLN02701 177 -RMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYE 255 (1050)
T ss_pred -hCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCcccccccccccccccccc
Confidence 9999999999999999999999999999999987776799999999994 44 4556777 55542 2
Q ss_pred CCCccCCC-CCCcccHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCc---cchHHHHHHHHHHHHHHhcCC--ceeEE
Q 001850 251 FDPVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQY---QYAESWFKQMDKLIHYVNKGG--RVNAL 324 (1005)
Q Consensus 251 ~~p~~~~~-~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~---~~a~~~~~~~~~li~~~N~~~--~~~i~ 324 (1005)
.|||.++| .++++|++++++.|++++++++..|++|++|+|+|+||+| .+|..||+||++||+++|++. .++++
T Consensus 256 ~cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~i~ 335 (1050)
T PLN02701 256 LCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAEVK 335 (1050)
T ss_pred cCcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCceEE
Confidence 47887764 5788999999999999999999999999999999999999 468899999999999999763 58999
Q ss_pred EcChhhHHHHHHhcC----------------CCCCCccCCCccccccCCCceeeeeecccchhhHHHHhhhHHHHHHHHH
Q 001850 325 YSTPSLYTEAKNAAN----------------GPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLE 388 (1005)
Q Consensus 325 ~sT~~~Yf~~v~~~~----------------~~~p~~~gDf~py~~~~~~ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~ 388 (1005)
||||++||+++++.. ..||+++||||||+++.++||||||||||.+|+++|.+|++|++||+|+
T Consensus 336 ~ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~L~ 415 (1050)
T PLN02701 336 FGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILF 415 (1050)
T ss_pred ECCHHHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998753 5799999999999999999999999999999999999999999999999
Q ss_pred HhhC--------CCCC---CCchHHHHHHHHhhccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC
Q 001850 389 FLAG--------KKSP---GPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGH 457 (1005)
Q Consensus 389 ~l~~--------~~~~---~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~ 457 (1005)
+++. ..++ .+.++.+|++|+++||||||||||+++|++||..||.+|+..++.+++.+++.|+.....
T Consensus 416 sla~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~~- 494 (1050)
T PLN02701 416 SFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRHE- 494 (1050)
T ss_pred HHHhhhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-
Confidence 9842 2243 245788999999999999999999999999999999999999999999999999864321
Q ss_pred CCCCCCCCccccc-CcccccCCCCCC-CCCCCCeEEEEEEcCCCceeeEEEEEEecCCcEEEECCCCCeEeEEEeecccc
Q 001850 458 QCTKPASTFSQCP-LLNISYCPPTEK-GIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNV 535 (1005)
Q Consensus 458 ~~~~~~~~~~~~~-~ln~s~~~~~~~-~~~~~~~~~v~vfNpl~~~r~~~V~i~v~~~~v~v~d~~g~~v~~Qi~~~~~~ 535 (1005)
.+..+...++.|. .+|++.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|++|++|++|++|.+..
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~~~ 574 (1050)
T PLN02701 495 KSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEWQH 574 (1050)
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEeccccc
Confidence 1222334577784 568999987741 12345568999999999999999999999999999999999999999988542
Q ss_pred cccccchhhhhccCCCCCCCCcEEEEEEEecCCCceEEEEEEecCCccc----ccccc------eec-----cCCCCCCc
Q 001850 536 TSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVK----RRKGF------FLA-----ADSPQDKT 600 (1005)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~----~~~~~------~~~-----~~~~~~~~ 600 (1005)
... ......|+|+|.|+||||||++|.|........ ..+.. +.. ........
T Consensus 575 ~~~-------------~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1050)
T PLN02701 575 DGE-------------KLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGDT 641 (1050)
T ss_pred ccc-------------ccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccCCCc
Confidence 110 012356899999999999999999986532111 00000 000 00112345
Q ss_pred eEecCCeEEEEEEcCCCcEEEEEecCCCeEEeeeEEEEEeeccCCCCCCCcceEecCCCcccccCCCccEEEEecCceEE
Q 001850 601 VEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDE 680 (1005)
Q Consensus 601 ~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~f~P~~~~~~~~~~~~~i~v~~Gpl~~~ 680 (1005)
++|||++++|+||++||.|++|+++++|++..++++|.+|.+ +.||||+|+|++.+.........+.|++||++++
T Consensus 642 ~~ieN~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s----~~SGAYiFrP~~~~~p~~~~~~~~~v~~Gplv~e 717 (1050)
T PLN02701 642 VEISNSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSS----QGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQE 717 (1050)
T ss_pred EEEecCeEEEEEcCCCCceeEEEecccCceecceeeeeeecC----CCCcceEEcCCCCCcccCCCCceEEEEeCCEEEE
Confidence 899999999999999999999999999999999999999974 5789999999887522222223456899999999
Q ss_pred EEEEe-----cceEEEEEEEeec-----CCceeEEEEECCeeccCCCCcEEEEEEEeeecCCcEEEEccCCcceeecccc
Q 001850 681 VHQQF-----NSWIYQVTRLYID-----KEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750 (1005)
Q Consensus 681 v~~~~-----~~~i~q~vrL~~~-----~~~ie~e~~v~~ip~~~~~~~e~~~rf~t~i~s~~~fyTDsnG~~~ikR~~~ 750 (1005)
|++.+ +++++|++|||++ ..++|+|++||+||. |..|||+++||.|+|+|+++||||+|||||+||+
T Consensus 718 V~~~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~qm~kR~-- 794 (1050)
T PLN02701 718 VHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRE-- 794 (1050)
T ss_pred EEEEeecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccceeeeec--
Confidence 99976 5789999999998 678999999999997 6789999999999999999999999999999997
Q ss_pred cccccccCCCCCcccceEeecceEEEee-CCceEEEEecCCcceeeccCcEEEEEEEeeeccCCCCcccccccccccccc
Q 001850 751 YRADWSLQVNEPVAGNYYPLNLGIFITD-KKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRD 829 (1005)
Q Consensus 751 ~r~~w~~~~~~pv~~NyYPv~s~~~I~D-~~~~ltvltdr~~G~~sl~~G~iElmL~Rr~~~DD~rGvge~l~e~~~~~~ 829 (1005)
+|+ ++|++||||||+++|||+| .+.||||+|||++||+|+++|+||||||||+++||+|||||+|+|+.
T Consensus 795 ---~~~---~~Pv~gNYYPv~s~a~IqD~~~~rltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l~dnk---- 864 (1050)
T PLN02701 795 ---TYD---KIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNR---- 864 (1050)
T ss_pred ---ccc---cCccccccccccceEEEEcCCCCeEEEEeccCcccccCCCcEEEEEEEeecccccCccccccccccc----
Confidence 343 6999999999999999999 66899999999999999999999999999999999999999999986
Q ss_pred CCCCeeEeeeEEEeccccCccc------------hhcccchhhhcccceeeeeccccc-cccccccCccccCccCCCCCC
Q 001850 830 NCEGLTVRGNYYLSVNQLGAGA------------RWRRTTGQEVYSPLLLAFTQEKLE-TWTESHLTKSTAMESDYSLPL 896 (1005)
Q Consensus 830 ~~~gl~~~~~~~l~~~~~~~~~------------~~~r~~~~~l~~p~~~~f~~~~~~-~~~~~~~~~~~~l~~~~~lp~ 896 (1005)
++..+|+|++++..... -..+..+..|++|+++++...... ........+|++|.+ +|||
T Consensus 865 -----~~~~~f~ll~e~~~~~~~~~~~~~~~~~Sl~sh~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~--~lpc 937 (1050)
T PLN02701 865 -----PMNVVFHLLLESNISSSPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQDTSFAPLAK--PLPC 937 (1050)
T ss_pred -----cccceEEEEEecccccCCCCCCCCcCCccHHHHHHHHhhcCCchhhcccCccccccccccccccccccC--CCCC
Confidence 35679999999665321 113456788999999887433221 111112267788776 8999
Q ss_pred cceEEEeeecCCC-------------cEEEEEecccccCC--C--CCCceeeeeehhhhccccccceeeecccccccchh
Q 001850 897 NVALITLEELDDG-------------SVLLRLAHLYEEGE--D--AEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKL 959 (1005)
Q Consensus 897 nv~lltl~~~~~~-------------~illRl~~~~~~~~--~--~~~s~~~~v~l~~lf~~~~i~~i~EtsLt~~~~~~ 959 (1005)
|+||+|||++... .||+|.+-.+..+. + |..+....|+|.+||.++.+.++++||||..++..
T Consensus 938 D~hlv~lrt~~~~~~~~~~~~~~~~~~~l~r~~~d~~~~~~~~~~c~~~~~~~~~~~~lf~~l~~~~~~~tsl~~~~~~~ 1017 (1050)
T PLN02701 938 DLHIVNFKVPRPSKYSQQEAEDPRFGLLLQRRGWDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDA 1017 (1050)
T ss_pred cEEEEEeeccCCcccccccCCCccEEEEEEecccCcccccCCCccCcccCCcccchhhhhcccceeeeecccccccccch
Confidence 9999999976432 27788763222211 1 21122223999999999999999999999999776
Q ss_pred hccceeeeeeCCCCCcCCCCCCCCCCCCCceEEecCCceeEEEEEC
Q 001850 960 EMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLKF 1005 (1005)
Q Consensus 960 ~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~v~~ 1005 (1005)
+|..+ ...-+ . .++...|+|+||||+||++++
T Consensus 1018 ~~~~~--~~~~~----------~--~~~~~~i~l~pmei~~~~~~~ 1049 (1050)
T PLN02701 1018 EMLGY--RKQAG----------S--AAQEGIVLISPMEIQAYKLDL 1049 (1050)
T ss_pred hhccc--ccccc----------c--cCCccceeeccceeeeEEEec
Confidence 55211 11110 0 122457999999999999985
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-162 Score=1365.07 Aligned_cols=901 Identities=30% Similarity=0.497 Sum_probs=738.2
Q ss_pred eeeecCCCCccCCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHH
Q 001850 27 YVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWW 106 (1005)
Q Consensus 27 ~~~~~~~~~~~~~~~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww 106 (1005)
.+.|+...+....+++|++|||||+||||++||++||+ .+.++||++++..|.++|++||+|+|++||.+||
T Consensus 149 ~i~yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww 220 (1129)
T KOG1958|consen 149 KITYDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLERWW 220 (1129)
T ss_pred eeecChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHHHhh
Confidence 34477776666667999999999999999999999998 8999999999999999999999999999999999
Q ss_pred hhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhh
Q 001850 107 VGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGV 186 (1005)
Q Consensus 107 ~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~ 186 (1005)
+.++|+.+++||.||++||||||+|||||+|||.+||.+||+|+++||+||+.+.|++|+++|.|||||||++||+||+
T Consensus 221 ~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL~- 299 (1129)
T KOG1958|consen 221 DDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLLR- 299 (1129)
T ss_pred hhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCcEEEEeccCHHHHHhhhhcCCceeEEecCCCCCCCCceeEeecCCC-CCCCC----------CCCcccCCC---CC
Q 001850 187 ELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPPS----------GFHFELTDD---FD 252 (1005)
Q Consensus 187 ~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~-Y~~p~----------~f~f~~~~~---~~ 252 (1005)
.+||++++|+|+||..|+.++.+|.+||+||+.++..+.++||||+||++ |+.|+ +|||.++++ .|
T Consensus 300 ~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~C 379 (1129)
T KOG1958|consen 300 RAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCEC 379 (1129)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCcCC
Confidence 99999999999999999999999999999999999888899999999985 87663 799988753 68
Q ss_pred CccCCC-CCCcccHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCccchHHH---HHHHHHHHHHHhcCC--ceeEEEc
Q 001850 253 PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESW---FKQMDKLIHYVNKGG--RVNALYS 326 (1005)
Q Consensus 253 p~~~~~-~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~---~~~~~~li~~~N~~~--~~~i~~s 326 (1005)
||..+| .|++.||++||+.+++|++++++.|++|.+|+|.||||+|..-.+| |.|+.+|+++||+.. +++++|+
T Consensus 380 pw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aqFG 459 (1129)
T KOG1958|consen 380 PWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQFG 459 (1129)
T ss_pred CCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceeeecC
Confidence 995544 6899999999999999999999999999999999999999987777 999999999999864 7899999
Q ss_pred ChhhHHHHHHhc------C-CCCCCccCCCccccccCCCceeeeeecccchhhHHHHhhhHHHHHHHHHHhhC-------
Q 001850 327 TPSLYTEAKNAA------N-GPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAG------- 392 (1005)
Q Consensus 327 T~~~Yf~~v~~~------~-~~~p~~~gDf~py~~~~~~ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~~l~~------- 392 (1005)
|++|||+++++. + ..+|+++||||+|||+..+||+|||||||++|++.|.+|+.||+||.+.+||.
T Consensus 460 TlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~r~~ 539 (1129)
T KOG1958|consen 460 TLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAHRVG 539 (1129)
T ss_pred CHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 999999999875 1 34799999999999999999999999999999999999999999999998641
Q ss_pred C--CCCC---CchHHHHHHHHhhccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCC-c
Q 001850 393 K--KSPG---PTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPAST-F 466 (1005)
Q Consensus 393 ~--~~~~---~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~ 466 (1005)
. ..+. ..+.+|||+|+++|||||||||||++|+.||..||..++..++.++.+++..|+..........+... +
T Consensus 540 ~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~~~~ 619 (1129)
T KOG1958|consen 540 LAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSHSFI 619 (1129)
T ss_pred hhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCce
Confidence 1 1222 24678999999999999999999999999999999999999999999999999976531111111111 1
Q ss_pred ccccC-cccccCCCC-CCCCCCCCeEEEEEEcCCCceeeEEEEEEecCCcEEEECCCCCeEeEEEeecccccccccchhh
Q 001850 467 SQCPL-LNISYCPPT-EKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYT 544 (1005)
Q Consensus 467 ~~~~~-ln~s~~~~~-~~~~~~~~~~~v~vfNpl~~~r~~~V~i~v~~~~v~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~ 544 (1005)
++-.. .+.+.-|.. -..+ ++.+..|++||||.+.|.++|.|.|+.+.|.|.+..|++|++||.|+|..+.+.
T Consensus 620 emd~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk----- 693 (1129)
T KOG1958|consen 620 EMDDIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK----- 693 (1129)
T ss_pred ehhhcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc-----
Confidence 11100 011111211 0112 233468999999999999999999999999999999999999999999632110
Q ss_pred hhccCCCCCCCCcEEEEEEEecCCCceEEEEEEecCCcccccc-c---ceec------c-CCCCCCceEecCCeEEEEEE
Q 001850 545 EAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRK-G---FFLA------A-DSPQDKTVEVGPGNLKMSFS 613 (1005)
Q Consensus 545 ~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~~~~-~---~~~~------~-~~~~~~~~~ieN~~~~v~~d 613 (1005)
......|+|+|.+.|||||..+|++..+.......+ + .++. . .....+-.+++|++.++.||
T Consensus 694 -------~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l~fd 766 (1129)
T KOG1958|consen 694 -------TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFELRFD 766 (1129)
T ss_pred -------eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeEEec
Confidence 012347999999999999999999987632211110 0 0100 0 01111234899999999999
Q ss_pred cCCCcEEEEEecCCCeEEeeeEEEEEeeccCCCCCCCcceEecCCCc-ccccCCCccEEEEecCceEEEEEEecc---eE
Q 001850 614 RTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSRSVPIKIIRGPMVDEVHQQFNS---WI 689 (1005)
Q Consensus 614 ~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~f~P~~~~-~~~~~~~~~i~v~~Gpl~~~v~~~~~~---~i 689 (1005)
+++|.|+++..+.+++...++..|..|.....++.||||.|.|+|++ |+..-....|.+ +|||+++|.+...+ ..
T Consensus 767 ~~~G~i~~~~~~~D~~~~~~q~~f~~y~~~~~~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~~~~v~~~~ 845 (1129)
T KOG1958|consen 767 PETGTIKSINSLSDNKHFESQVSFSNYGERISGDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQFLKNVLHRL 845 (1129)
T ss_pred cccchhhhhhhcccCCCcccceeeccccccccCCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccccchHHHhc
Confidence 99999999988878888888888888876555788999999999985 544444456777 99999999987643 22
Q ss_pred EEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEeeecCCcEEEEccCCcceeecccccccccccCCCCCcccceEe
Q 001850 690 YQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYP 769 (1005)
Q Consensus 690 ~q~vrL~~~~~~ie~e~~v~~ip~~~~~~~e~~~rf~t~i~s~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYP 769 (1005)
.|.+++|.|. .+|++..|+ +.+..+.|+.+||.|++++...||||+||+||+||.+. .+.|+++||||
T Consensus 846 ~~~~~~~~G~-~vei~~~vd---i~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~KlPlQaNyYP 913 (1129)
T KOG1958|consen 846 SQNVRGYSGE-EVEISNSVD---IRKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKLPLQANYYP 913 (1129)
T ss_pred hhheeccCCc-ceeeeceee---cccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccCcccceeec
Confidence 3788999886 677777664 44567899999999999999999999999999999875 47899999999
Q ss_pred ecceEEEeeCCceEEEEecCCcceeeccCcEEEEEEEeeeccCCCCccccccccccccccCCCCeeEeeeEEEeccccCc
Q 001850 770 LNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGA 849 (1005)
Q Consensus 770 v~s~~~I~D~~~~ltvltdr~~G~~sl~~G~iElmL~Rr~~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~ 849 (1005)
|++++||+|.+.+|++++.+++|++|+.+|+||||++||+.+||+||+|+|+.|+.. +...|+|+++....
T Consensus 914 mpt~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL~~DD~rGLgqGv~DNk~---------t~~~frlv~e~~~s 984 (1129)
T KOG1958|consen 914 MPTAAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRLNQDDGRGLGQGVIDNKP---------TDMKFRLVLESLNS 984 (1129)
T ss_pred ccceeeeecCCceEEEEeecccCccccccceEEEEecccccCCCCccccccccccch---------hhheeeeeeccccc
Confidence 999999999999999999999999999999999999999999999999999988753 45689999987764
Q ss_pred cch------------hcccchhhhcccceeeeeccccccccccccCccccCccCCCCCCcceEEEeeecCCC--------
Q 001850 850 GAR------------WRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDG-------- 909 (1005)
Q Consensus 850 ~~~------------~~r~~~~~l~~p~~~~f~~~~~~~~~~~~~~~~~~l~~~~~lp~nv~lltl~~~~~~-------- 909 (1005)
.+. ..+...+.+++|++.++..... +.+ ....+.++.. +|||++|++|++++.+.
T Consensus 985 ~~~p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~pk--~i~-~~g~~~~~~~--~lpcDl~lvt~rtl~~~~~~~~~~~ 1059 (1129)
T KOG1958|consen 985 AQDPTENSRVSYPSLAAHLASQSLNYPLMKFIYAEPK--KIE-DQGIFEPLNL--SLPCDLHLVTFRTLESSKAAEKRAA 1059 (1129)
T ss_pred ccCchhcCCCCChhhhhhcccceecCCchhhcccCCC--Chh-hccccccccC--CCccceeEEEeeeccCcccccccce
Confidence 221 1245677889999877632221 111 1333455554 89999999999999754
Q ss_pred cEEEEEecccccCC-CCCCceeeeeehhhhccccccceeeecccccccchhhccceeeeeeCCCCCcCCCCCCCCCCCCC
Q 001850 910 SVLLRLAHLYEEGE-DAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDAST 988 (1005)
Q Consensus 910 ~illRl~~~~~~~~-~~~~s~~~~v~l~~lf~~~~i~~i~EtsLt~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~ 988 (1005)
.||+|.+ .+|+. +.-.+...++++.+|+.. +.+++.|+|++.+..... .+ .
T Consensus 1060 lil~R~~--~~c~~~~~g~c~~~ki~~~~ll~~--~~~v~~tsLs~l~~~~~~--------------------~~----~ 1111 (1129)
T KOG1958|consen 1060 LILHRHA--TDCRSQKKGTCGQLKISVMDLLIK--AKSVKKTSLSLLQEVGGI--------------------IG----V 1111 (1129)
T ss_pred eeeeecc--cccccccccccccccCcHHHHHHH--HHhhchhhHHhhhhcccC--------------------CC----c
Confidence 3777764 44432 111122447888888886 889999999998854321 11 1
Q ss_pred ceEEecCCceeEEEEE
Q 001850 989 LVVELGPMEIRTFLLK 1004 (1005)
Q Consensus 989 ~~i~l~PmeIrTf~v~ 1004 (1005)
....++||||++|.+.
T Consensus 1112 ~~~~~~pme~~~~l~~ 1127 (1129)
T KOG1958|consen 1112 EEQELSPMEISAFLTS 1127 (1129)
T ss_pred cccccccccccccccc
Confidence 1456799999999875
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=2.4e-105 Score=996.78 Aligned_cols=824 Identities=16% Similarity=0.235 Sum_probs=611.3
Q ss_pred ceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEE--echHHHHHHHhhcChHHHHHH
Q 001850 40 KLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVF--AEMAFFHRWWVGQSPEIQEQV 117 (1005)
Q Consensus 40 ~~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~--~e~~~~~~ww~~~~p~~~~~v 117 (1005)
+++||+|||||||+|||||++++.. ++.++|++|+++|+++|+++|.+ ++++++ +||.+.+|+.+++|
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~~---------~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l-~~~~~~~Pe~~~~i 72 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSRI---------LLVNNMEEILDRLEQDNDYKYYVLDGQTSLL-EDYLAVKPEDKERV 72 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhHH---------HHHHHHHHHHHHHHhCCCcceEEEchhHHHH-HHHHHhChHHHHHH
Confidence 4789999999999999999999985 88999999999999999999754 456666 55558899999999
Q ss_pred HHHHHcCCeEEEceee-eeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEe
Q 001850 118 RKLVDASQLEFVNGGW-CMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFA 196 (1005)
Q Consensus 118 k~lV~~GrlE~v~GgW-v~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~ 196 (1005)
|+||++||| ++ ||| ||+||+++|+|||||||++||+|+ ++||..|++||+|||||||++|||||+ +|||+++++|
T Consensus 73 k~lV~~Grl-~~-G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl~-~~Gi~~~~~w 148 (875)
T PRK09819 73 KKLVQAGKL-II-GPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIYN-GFGITRTLFW 148 (875)
T ss_pred HHHHHcCCE-eE-CcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHHH-hCCCCeEEEE
Confidence 999999999 44 888 899999999999999999999998 799999999999999999999999998 9999999999
Q ss_pred ccCHHHHHhhhhcCCceeEEecCCCCCCCCceeEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 001850 197 RIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAA 276 (1005)
Q Consensus 197 Ri~~~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~ 276 (1005)
|+..+ +...+..+|+|+|+| ||+||||++|.+|+.+..+ | ....+++++++.+++.+
T Consensus 149 r~~~~----~~~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g~~~---------~------~~~~~~~~~~~~~~~~~ 205 (875)
T PRK09819 149 RGVSD----RHGTDKTEFLWQSDD----GSEVLAQQLPLGYAIGKYL---------P------EDEEELKKRLDEYFGVL 205 (875)
T ss_pred ecccc----cccCCCceEEEECCC----CCeEEEEECccccccCCCC---------C------cCHHHHHHHHHHHHHHH
Confidence 97432 111245699999999 9999999999999764211 1 12257788888887777
Q ss_pred HHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhcC-CceeEEEcChhhHHHHHHhcCCCCCCccCCCcc-ccc
Q 001850 277 LTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG-GRVNALYSTPSLYTEAKNAANGPWPLKTDDYFP-YAD 354 (1005)
Q Consensus 277 ~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~~-~~~~i~~sT~~~Yf~~v~~~~~~~p~~~gDf~p-y~~ 354 (1005)
++++ .++++|+|+|+|+.+.. ++|.++|+.+|.. +.+++++||+++||+++++....||+++|||++ +.
T Consensus 206 ~~~~---~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y- 276 (875)
T PRK09819 206 EKKS---STKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKY- 276 (875)
T ss_pred hhcC---CCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcc-
Confidence 6654 68999999999987654 5788888888865 568999999999999999877889999999983 22
Q ss_pred cCCCceeeeeecccchhhHHHHhhhHHHH-HHHHHHhh---CCCCCCCchHHHHHHHHhhccccCCCCCCcccchHHHHH
Q 001850 355 RRNAYWTGFFTSRPALKGYVRVLSGFYLA-SRQLEFLA---GKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAK 430 (1005)
Q Consensus 355 ~~~~ywtG~yTSRp~~K~~~R~~e~~L~~-ae~l~~l~---~~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~ 430 (1005)
..+|+||||||+.+|+++|++|++|+. +|.|.+++ |..|+...++++|+.|+++||||+||||++++|++|+..
T Consensus 277 --~~~HrG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~ 354 (875)
T PRK09819 277 --MRVHRSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVA 354 (875)
T ss_pred --ccccCCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHH
Confidence 246699999999999999999999974 88888875 456777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccCcccccCCCCCCCCCCCCeEEEEEEcCCCceeeEEEEEEe
Q 001850 431 RLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPV 510 (1005)
Q Consensus 431 rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~~~V~i~v 510 (1005)
|+.++.+.++.+++.+++.|+.... .++...++||||++|+|+++|++++
T Consensus 355 r~~~~~~~~~~l~~~~l~~l~~~i~------------------------------~~~~~~~~vfN~l~~~r~~~v~i~~ 404 (875)
T PRK09819 355 RYKLAEDLADNLLDFYMRKIADNMP------------------------------QSDADKLTVFNLLPYEREEVINTTV 404 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------------------------------cCCCCEEEEEcCCCccceeEEEEEE
Confidence 9999999999999999999986421 1334578999999999999999876
Q ss_pred --cCCcEEEECCCCCeEeEEEeecccccccccchhhhhccCCCCCCCCcEEEEEEE-ecCCCceEEEEEEecCCcccccc
Q 001850 511 --NDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQV-TVPPLGWNTYFISRAAGKVKRRK 587 (1005)
Q Consensus 511 --~~~~v~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~-~vP~lG~~~y~i~~~~~~~~~~~ 587 (1005)
+...+.+.|.+|++|++|+................ ..+. ......+.+.|.+ +||||||++|.+...+.....
T Consensus 405 ~~~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~-- 480 (875)
T PRK09819 405 YLPASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIV-HYGN-YDPFMEFDIQINVQILPAMGYRTLYIELNEEGNVI-- 480 (875)
T ss_pred EeccCCEEEECCCCCEeeEEEeeccccccchhhccee-ccCC-CCceEEEEEEEEECCCCCcccEEEEEEeCCccccc--
Confidence 56788899999999999998554221110000000 0000 0001246788885 899999999998764332110
Q ss_pred cceeccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCCeEEeeeEEEEEeeccCCCCCCCcceEecCCCc-ccccCC
Q 001850 588 GFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSR 666 (1005)
Q Consensus 588 ~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~f~P~~~~-~~~~~~ 666 (1005)
.........|||++|+|+|| .+|.| +|+||.+|+++. .+..|++ .++.||+|+|.|...+ ......
T Consensus 481 ------~~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~d--~~d~gD~yd~~p~~~d~~~~~~~ 547 (875)
T PRK09819 481 ------EPKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD---RQLIIEE--NGDDGDEYDYSPPREDWVITSAE 547 (875)
T ss_pred ------cccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe---ceEEEEe--cCcCCCCcccCCCCCCCEEeccC
Confidence 01223467899999999999 68999 599999999874 3444543 3788999999986543 222222
Q ss_pred -CccEEEEecCceEEEEEEe------------------cceEEEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEe
Q 001850 667 -SVPIKIIRGPMVDEVHQQF------------------NSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTA 727 (1005)
Q Consensus 667 -~~~i~v~~Gpl~~~v~~~~------------------~~~i~q~vrL~~~~~~ie~e~~v~~ip~~~~~~~e~~~rf~t 727 (1005)
...+.+++||+.+++++.+ .+.+.|+++|++++++|+|+++|++. ..++.+++.|++
T Consensus 548 ~~~~~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lrv~fp~ 623 (875)
T PRK09819 548 AVPSVEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLRVLFPT 623 (875)
T ss_pred CcceEEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEEEEccC
Confidence 3467788899988877664 24788999999999999999999754 567889999999
Q ss_pred eecCCcEEEEccCCcceeeccccc--ccccccCCCCCcccceEeecceEEEeeCCceEEEEecCCcceeeccC--cEEEE
Q 001850 728 NMVTEKVFYTDSNGRDFLKRVRDY--RADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKD--GQVEI 803 (1005)
Q Consensus 728 ~i~s~~~fyTDsnG~~~ikR~~~~--r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvltdr~~G~~sl~~--G~iEl 803 (1005)
+|.+..++|..++| .++|+++. .++|+.+.++....+-||+.++|++.|.+.+++|+||+++|.....+ ++|.|
T Consensus 624 ~i~~~~~~~d~~fG--~i~Rp~~~~~~~~W~~~~~~e~p~~~~~~~~~v~ls~~~~Gvall~dg~~ey~v~g~~~~~i~L 701 (875)
T PRK09819 624 EIASKFSLADQQFG--SITRPVNDPAMDVWEQEGWQEAPISIEPMQSFVALHDERHGVAVFTEGVREYEIIGENYDTIAL 701 (875)
T ss_pred CCCCCceEcCCCce--EEECCCcCccccccccccceeCCCCChhhhceEEEecCCceEEEECCCcceEEEecCCCCeEEE
Confidence 99999899998888 99999765 36898887765556689999999999999999999999999765432 48999
Q ss_pred EEEeeecc---CC-----CCccccccccccccccCCCCeeEeeeEEEeccccCccchhcccchhhhcccceeeeeccc--
Q 001850 804 MLHRRMLA---DD-----GRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEK-- 873 (1005)
Q Consensus 804 mL~Rr~~~---DD-----~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~~~~r~~~~~l~~p~~~~f~~~~-- 873 (1005)
+|+|+..+ +| +|.-|..+ .+. ..+|.|- ..-+|.|..-..+-........+..++.|+.++-....
T Consensus 702 TLlRs~g~lgk~~l~~rpgr~sG~~~-ptP--~aq~~G~-h~f~y~l~ph~g~~~~~~~~~~a~~~n~p~~~~~~~~~~~ 777 (875)
T PRK09819 702 TLFRGVGLLGKEDLLYRPGRPSGIKI-PTP--DSQLLGE-LSFRFSLTSYEGTFDEAGVAQQAKEYLTPVQCYNKIPFLN 777 (875)
T ss_pred EeecccCccCCCccccCCCcccCCcc-CCC--hHHhcCc-eEEEEEEEEccCCcchHHHHHHHHHhccCcceeecccccc
Confidence 99999743 11 22222111 110 0123342 12233333211111111113467889999875421100
Q ss_pred --cccccccccCccccCccCCCCCCcceEEEeeecCCC-cEEEEEecccccCCCCCCceeeeeehhhhccccccceeeec
Q 001850 874 --LETWTESHLTKSTAMESDYSLPLNVALITLEELDDG-SVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEM 950 (1005)
Q Consensus 874 --~~~~~~~~~~~~~~l~~~~~lp~nv~lltl~~~~~~-~illRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~i~~i~Et 950 (1005)
..........+++.+. -.+.++.+-++|+.+++ .++||+.+ ...... ..+.+. | ...+..+.|+
T Consensus 778 ~~~~~~~~~~~~~~s~~~---~~~~~i~~sa~K~aed~~~~ilRlyn---~~~~~~--~~~~l~----~-~~~~~~~~~~ 844 (875)
T PRK09819 778 MRLNDEEFTLPESYSLLK---MPPDGAVLSAVKKAEDRDGLILRFFN---PAESKT--CDATVA----F-SKEVKSLDET 844 (875)
T ss_pred cccCcccCCCCcccccee---eCCCCEEEEEEEEeccCCCEEEEEeC---CCCCcc--ccccce----e-ccchhheeec
Confidence 0000011122233332 12458999999998765 49999854 321110 011111 1 2345566777
Q ss_pred ccccccchhhccceeeeeeCCCCCcCCCCCCCCCCCCCceEEecCCceeEEEEE
Q 001850 951 SLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLK 1004 (1005)
Q Consensus 951 sLt~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~v~ 1004 (1005)
+|-..... +. .+.. ...++|.|.||+|++|.
T Consensus 845 ~l~E~~~~-~~---------------------~~~~-~~~~~~~p~eI~T~~i~ 875 (875)
T PRK09819 845 MLDEKITT-EE---------------------NQGS-NLSGELKPCQVQTFLVK 875 (875)
T ss_pred cccccccc-cc---------------------cccc-cccccccCCeeEEEEeC
Confidence 77764311 10 0001 11268999999999974
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-79 Score=668.76 Aligned_cols=700 Identities=18% Similarity=0.240 Sum_probs=545.0
Q ss_pred CCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHH
Q 001850 38 AGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQV 117 (1005)
Q Consensus 38 ~~~~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~~~~v 117 (1005)
...-+||.|+|.|+|.+|||+|.|..+ ++.+...+.+++|+++|+++|+.++..-| +|.++.+|+.++++
T Consensus 278 es~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQAqQ~-~WlkedhP~~f~kl 347 (1078)
T KOG4342|consen 278 ESQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQAQQL-EWLKEDHPGLFSKL 347 (1078)
T ss_pred ccccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhhHHHH-HHHhhhChhHHHHH
Confidence 346899999999999999999999995 88889999999999999999998877666 89999999999999
Q ss_pred HHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEec
Q 001850 118 RKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFAR 197 (1005)
Q Consensus 118 k~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~R 197 (1005)
++.+.+||+-.|||.||++|.++|++|+||||+..|+.|+.++||.+.+.-|.||+||+|+++|||.+ .+||+.+.+++
T Consensus 348 ~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQicr-lcGidrFLTQK 426 (1078)
T KOG4342|consen 348 QEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQICR-LCGIDRFLTQK 426 (1078)
T ss_pred HHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHHH-hhcHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCHHHHHhhhhcCCceeEEecCCCCCCCCceeEeecCCC-CCCCCCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 001850 198 IDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAA 276 (1005)
Q Consensus 198 i~~~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~-Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~ 276 (1005)
+.|+..+.+++. .|.|.|.| ||+|++|+-|.. |... -++.+ .+..+
T Consensus 427 LSWNniNSFPhs---TFnW~glD----GSqvl~HmPPgntYtad----------------------~~v~d----VL~tv 473 (1078)
T KOG4342|consen 427 LSWNNINSFPHS---TFNWEGLD----GSQVLVHMPPGNTYTAD----------------------GSVED----VLKTV 473 (1078)
T ss_pred ccccccCcCCcc---ceeeeecc----CceEEEecCCCCccccc----------------------CcHHH----HHHHH
Confidence 999999999887 99999999 999999997754 6432 22222 33333
Q ss_pred HHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHH---HHhcCC-ceeEEEc-ChhhHHHHHHhc---CCCCCCccCC
Q 001850 277 LTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIH---YVNKGG-RVNALYS-TPSLYTEAKNAA---NGPWPLKTDD 348 (1005)
Q Consensus 277 ~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~---~~N~~~-~~~i~~s-T~~~Yf~~v~~~---~~~~p~~~gD 348 (1005)
.+....-+.++-|+.+|-.- +.++|+-+.++||.+ .-|.++ -++++.+ |+++||+++.+. +..+|+|.||
T Consensus 474 ~qnk~~~~~~~gl~lfG~GD--GGGGPT~eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~GE 551 (1078)
T KOG4342|consen 474 AQNKDKGRANHGLFLFGFGD--GGGGPTQEMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVGE 551 (1078)
T ss_pred HhcCCccccCcceEEEEecC--CCCCCcHHHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccchh
Confidence 33333445566667776321 224566677777654 334555 6899999 999999999875 4669999999
Q ss_pred CccccccCCCceeeeeecccchhhHHHHhhhHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHhhccccCCCCCCccc
Q 001850 349 YFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGK-----KSPGPTTSALGDALGIAQHHDAVTGTAKQH 423 (1005)
Q Consensus 349 f~py~~~~~~ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~l~~~l~~~QhHDaItGTs~~~ 423 (1005)
+| .++++|.|||++.+|+..|.+|..|+.+|.+.+++.. .||...++.||+.++++||||.++|++++.
T Consensus 552 Ly------fEfHrGTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCIeM 625 (1078)
T KOG4342|consen 552 LY------FEFHRGTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCIEM 625 (1078)
T ss_pred eE------EEEecCceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHHHH
Confidence 99 7899999999999999999999999999999998643 356677899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccCcccccCCCCCCCCCCCCeEEEEEEcCCCceee
Q 001850 424 TTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRT 503 (1005)
Q Consensus 424 V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~ 503 (1005)
|+++.+-.+.+....++.++..+++.|.... ++ .-.+++.|+|+|.|.
T Consensus 626 VykeA~p~~~~v~k~~~tLl~~a~~~L~as~-------------------------------s~-ke~L~~~nTLpW~~~ 673 (1078)
T KOG4342|consen 626 VYKEAMPHYEDVRKHGNTLLSAAAAALCASE-------------------------------SG-KEGLLIVNTLPWKRI 673 (1078)
T ss_pred HHHhhhhHHHHHHHhhHHHHHHHHHHHhcCC-------------------------------CC-ccceEEEecccccee
Confidence 9999999999999999999999998885321 12 234678899999999
Q ss_pred EEEEEEecCCcEEEECCCCCeEeEEEeecccccccccchhhhhccCCCCCCCCcEEEEEEEecCCCceEEEEEEecCCcc
Q 001850 504 DIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKV 583 (1005)
Q Consensus 504 ~~V~i~v~~~~v~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~ 583 (1005)
+++.++-+.+... .+ ..++|++|++... ++.
T Consensus 674 ~v~~~~kp~k~~~-----------------------------------------~e---~c~~~g~~ta~vt-----~~~ 704 (1078)
T KOG4342|consen 674 EVMALPKPGKAHS-----------------------------------------LE---LCTVPGMGTAPVT-----PPT 704 (1078)
T ss_pred eeecccCCCCcee-----------------------------------------EE---EeccCCccccCCC-----CCC
Confidence 9877765432111 01 1356666654321 000
Q ss_pred cccccceeccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCCeEEe---------eeEEEEEeeccCCCCCCCcceE
Q 001850 584 KRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVP---------IQQSFLWYGSMVDTQSSGAYIF 654 (1005)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~---------~~~~f~~Y~~~~~~~~sgAY~f 654 (1005)
.+ +. .-...+.++|.|+.+||.++ .+|.|+||++...|+++. -.++|..|++. +-.+.||+-
T Consensus 705 ~p----~~--~yq~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD~--PL~WqAWDt 775 (1078)
T KOG4342|consen 705 SP----VF--VYQTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDDV--PLYWQAWDT 775 (1078)
T ss_pred Cc----ee--EEecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecCC--ccchhhhhh
Confidence 00 00 01235678999999999999 579999999988888865 23789999752 556777753
Q ss_pred ecCCCcccccCC-CccEEE-EecCceEEEEEEe----cceEEEEEEEeecC-----CceeEEEEECCeeccCCCCcEEEE
Q 001850 655 RPNGAQPNVVSR-SVPIKI-IRGPMVDEVHQQF----NSWIYQVTRLYIDK-----EHAEVEYTIGPIPTEDSVGKEVIS 723 (1005)
Q Consensus 655 ~P~~~~~~~~~~-~~~i~v-~~Gpl~~~v~~~~----~~~i~q~vrL~~~~-----~~ie~e~~v~~ip~~~~~~~e~~~ 723 (1005)
.-..-..+++-. ...+.| .+|+++..+.+.+ ++.+.++|.|..+. +.+.|.++|+ + ++.+|-+.+
T Consensus 776 e~ysle~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~---W-he~~KFLKV 851 (1078)
T KOG4342|consen 776 EDYSLERYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVH---W-HEAHKFLKV 851 (1078)
T ss_pred hhhceecceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEe---e-hhcCceEEe
Confidence 211112233333 334666 7899988766544 56788999987765 7788988886 2 356889999
Q ss_pred EEEeeecCCcEEEEccCCcceeecccccccccccCCCCCcccceEeecceEEEeeCCceEEEEecCCcceeeccCcEEEE
Q 001850 724 RMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEI 803 (1005)
Q Consensus 724 rf~t~i~s~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvltdr~~G~~sl~~G~iEl 803 (1005)
.|+.+|.|.-+.|..++| +.||+++|+++|+-+.+|...+.| ++..|-..+++|+|||+||. |.+..-|.|
T Consensus 852 EFPv~irs~fAsYEtQFG--itkRPTHYNTSWDvAkFEVchhkf------aDySe~~~Gvs~LNDCKYGf-SthGnlmrL 922 (1078)
T KOG4342|consen 852 EFPVRIRSSFASYETQFG--ITKRPTHYNTSWDVAKFEVCHHKF------ADYSEHGFGVSLLNDCKYGF-STHGNLMRL 922 (1078)
T ss_pred eccccccccchhhhhhcc--cccCCccccccchhhHhHHHHhhh------hhhhhcccceeeeccccccc-ccccceeee
Confidence 999999999899998888 999999999999999999999999 99999999999999999995 789999999
Q ss_pred EEEeeeccCCCCccccccccccccccCCCCeeEeeeEEEe--ccccCccc-hhcccchhhhcccceeeeecccccccccc
Q 001850 804 MLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLS--VNQLGAGA-RWRRTTGQEVYSPLLLAFTQEKLETWTES 880 (1005)
Q Consensus 804 mL~Rr~~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~--~~~~~~~~-~~~r~~~~~l~~p~~~~f~~~~~~~~~~~ 880 (1005)
.|+|++-.+|... |. |+|-+. +-+...+- +-.-+.+.++|+|.-+.....+..
T Consensus 923 SLLRsPKaPDAhA------Dm-------------G~Hei~YA~yPH~g~lds~tv~aAh~fN~~fkl~lpa~~~a----- 978 (1078)
T KOG4342|consen 923 SLLRSPKAPDAHA------DM-------------GRHEITYALYPHKGSLDSGTVQAAHSFNFPFKLALPAPSPA----- 978 (1078)
T ss_pred hhhcCCCCCCccc------cc-------------CcceEEEEeccCCCCCchhHHHHHHhcCCceeeccCCCCCC-----
Confidence 9999999999754 21 223222 22222111 111246788888875544333221
Q ss_pred ccCccccCccCCCCCCcceEEEeeecCC----CcEEEEEeccccc
Q 001850 881 HLTKSTAMESDYSLPLNVALITLEELDD----GSVLLRLAHLYEE 921 (1005)
Q Consensus 881 ~~~~~~~l~~~~~lp~nv~lltl~~~~~----~~illRl~~~~~~ 921 (1005)
....|..+.. +=.+||.|-++|..++ ..|+||+ ||.
T Consensus 979 n~d~~dafsv--sgdpnViLs~iK~aE~~~~~~SivlRv---YEs 1018 (1078)
T KOG4342|consen 979 NADSWDAFSV--SGDPNVILSTIKQAESSPQRRSIVLRV---YES 1018 (1078)
T ss_pred CCccccceee--cCCchHHHHHhhhhccCcccceEEEEe---hhh
Confidence 1222333322 3357888888888764 3699997 776
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.4e-59 Score=515.10 Aligned_cols=270 Identities=31% Similarity=0.530 Sum_probs=216.1
Q ss_pred EEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHH
Q 001850 42 NVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLV 121 (1005)
Q Consensus 42 ~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV 121 (1005)
+||+|||||+|+||++|+++|. ..+.++|+++++.|+++|++||+++|+.++++|| +..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~-~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDYL-EDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHHHHHH-HCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHHHHHH-HhCCHHHHHHHHHH
Confidence 6999999999999999999996 5999999999999999999999999999995555 56999999999999
Q ss_pred HcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEeccCHH
Q 001850 122 DASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQ 201 (1005)
Q Consensus 122 ~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~Ri~~~ 201 (1005)
++||||||||+|||+||+++++|++||||++|++|++++||++|++||+||+||||+++|+||+ ++||++++++|++++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il~-~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQILK-QFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHHH-TTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHHh-ccCcceEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHhhhhcCCceeEEecCCCCCCCCceeEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHHHHhcc
Q 001850 202 DRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQAN 281 (1005)
Q Consensus 202 ~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~~ 281 (1005)
+++.++..+.++|+|+|+| |++||||++|.+|..|. .+ .+. ++++.+++.+++.+.
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~-~~------------------~~~-~~~~~~~~~~~~~~~ 205 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPW-YG------------------SEF-EDADELLEQLRKLAK 205 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHH-TT------------------CCH-HHHHHHHHHHHHHHC
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCC-CC------------------ccc-ccHHHHHHHHHHHHH
Confidence 9998888888999999999 89999999999875521 10 011 457788899999999
Q ss_pred ccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHh---c-CCceeEEEcChhhHHHHHHhcCCCCCCc-cCCCcccc
Q 001850 282 VTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVN---K-GGRVNALYSTPSLYTEAKNAANGPWPLK-TDDYFPYA 353 (1005)
Q Consensus 282 ~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N---~-~~~~~i~~sT~~~Yf~~v~~~~~~~p~~-~gDf~py~ 353 (1005)
.+.++++|+|+|+|. ..+..++++++++| + ...++++|||+++||++++++ .+||++ +|||+||+
T Consensus 206 ~~~~~~~l~~~G~d~------~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 206 KYYTNNILIPYGDDD------DGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CSSSSEEEEEEEEEH------HHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred hcCCCceEEEeecCC------CCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 999999999999981 22234444555554 4 358999999999999999998 999999 99999995
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.5e-51 Score=497.87 Aligned_cols=715 Identities=18% Similarity=0.209 Sum_probs=506.4
Q ss_pred eEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHH
Q 001850 41 LNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKL 120 (1005)
Q Consensus 41 ~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~~~~vk~l 120 (1005)
.+|+.+.|+|.|..|+|.+++... +....+.+++..|+..|.++|+...+..+ .|..+..|+..++ ++
T Consensus 198 ~~I~~~ghahid~aWlw~l~et~r---------~a~ts~~~~~~l~D~~p~~~~~~s~~~~y-~~l~~d~p~l~~~--~~ 265 (943)
T COG0383 198 NEIPAVGHAHIDTAWLWPLDETER---------KASTSFSLVMNLMDHYPVQKFVQSAAALY-NWLKPDVPFLFSR--PA 265 (943)
T ss_pred ccccccchhhHHHHHhccHHHHHH---------HHhhhhhheecccccChhhhhhhhHHHHH-HHhcCccHHHhhc--cc
Confidence 349999999999999999999985 88999999999999999999998766666 9999999999999 99
Q ss_pred HHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEeccCH
Q 001850 121 VDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDY 200 (1005)
Q Consensus 121 V~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~Ri~~ 200 (1005)
|+.|+|++++|+||.+|.++++||+++||+.+|++|+.++||...|+.|.+|+||.|+++|+|+. .+|++.++++++.|
T Consensus 266 v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~-p~gi~~f~t~klaw 344 (943)
T COG0383 266 VEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILE-PLGIDVFVTTKLAW 344 (943)
T ss_pred ccccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHH-hhcchhhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHhhhhcCCceeEEecCCCCCCCCceeEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHHHHHHHHHHHHHhc
Q 001850 201 QDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQA 280 (1005)
Q Consensus 201 ~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~ 280 (1005)
++.+.++++ .|.|++.+ |+++++|..+.+++.. + ..+..+ -..++
T Consensus 345 n~tn~~Ph~---~~~w~~~d----g~e~~~hds~~~~~~d-----------------~-------v~~~~~--~r~~~-- 389 (943)
T COG0383 345 NDTNRFPHD---LLRWRWKD----GTENLAHDSICGCSSD-----------------P-------VHREME--YRFEK-- 389 (943)
T ss_pred hhccCCChh---Hheeeccc----ccccceeecCCCCccc-----------------H-------HHHHHH--hhhhh--
Confidence 999999996 89999999 9999999876554211 0 011111 11111
Q ss_pred cccCCCeEEEeecC-CCCccchHHHHHHHHHHHHHHhcCCceeEEEcChhhHHHH----HHhcCCCCCCccCCCcccccc
Q 001850 281 NVTRDNHIMWTMGD-DFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEA----KNAANGPWPLKTDDYFPYADR 355 (1005)
Q Consensus 281 ~~~~t~~il~~~G~-Df~~~~a~~~~~~~~~li~~~N~~~~~~i~~sT~~~Yf~~----v~~~~~~~p~~~gDf~py~~~ 355 (1005)
.....|+.+|. |+..+ +.-+.+++. . -..+..+|.. +.......|++.|++|
T Consensus 390 ---~~~~~~~~~g~gd~ggg---~~~dm~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely----- 446 (943)
T COG0383 390 ---INQVGLYLYGYGDGGGG---PSIDMLENP---E---------LPIAEGVFNTGVEKKTSTLELVPTWDGELY----- 446 (943)
T ss_pred ---hccceeEEeeccCCCCC---CCHHHHhcc---c---------cccccceeeecceeeeeecccccccchhhh-----
Confidence 23455666664 33222 222222211 1 1222233322 1223456899999998
Q ss_pred CCCceeeeeecccchhhHHHHhhhHHHHHHHHHHhh----C--CCCCCCchHHHHHHHHhhccccCCCCCCcccchH-HH
Q 001850 356 RNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA----G--KKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTN-DY 428 (1005)
Q Consensus 356 ~~~ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~~l~----~--~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~-dy 428 (1005)
.++++|+||+....|.++|..|..|+.+|.+.+++ + ..++...++++|+.++++|+||.++|++...|+. +.
T Consensus 447 -~E~hrg~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~~a 525 (943)
T COG0383 447 -LELHRGTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSYDA 525 (943)
T ss_pred -hhccCceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechhhH
Confidence 78999999999999999999999999999888773 2 3566778899999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccCcccccCCCCCCCCCCCCeEEEEEEcCCCceeeEEEEE
Q 001850 429 AKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRI 508 (1005)
Q Consensus 429 ~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~~~V~i 508 (1005)
...+......+..++..+++.|.+.. .....++|++.|++.
T Consensus 526 ~~~~~~~~~~~~~i~~~~~~~l~~~~----------------------------------~e~~~~~~~~~~~~~----- 566 (943)
T COG0383 526 LPLLEVVQKGASKIAELALKVLSSQC----------------------------------LENLFVKNTLSWNGI----- 566 (943)
T ss_pred HHHHHhhhccchhhhhhhhhhhhhcc----------------------------------ccceEEEeeccCCcc-----
Confidence 88888888888888888888774321 124678999999871
Q ss_pred EecCCcEEEECCCCCeEeEEEeecccccccccchhhhhccCCCCCCCCcEEEEEEEecCCCceEEEEEEecCCccccccc
Q 001850 509 PVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKG 588 (1005)
Q Consensus 509 ~v~~~~v~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~~~~~ 588 (1005)
.+.|.|..++.++.+.+. ...++|++|...++++......
T Consensus 567 -----~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~~----- 606 (943)
T COG0383 567 -----SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTEP----- 606 (943)
T ss_pred -----eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEeccccccc-----
Confidence 455677655555443321 1136888888888773322110
Q ss_pred ceeccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCCeEEeeeEEEEEeeccCCCCCCCcceEecCCCc-ccccCCC
Q 001850 589 FFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSRS 667 (1005)
Q Consensus 589 ~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~f~P~~~~-~~~~~~~ 667 (1005)
.....++...+..++ ++| +.+..|+.. +..++||.-.+.... ...+...
T Consensus 607 ----------~~~~~~~~~~~~~~~-~~g-----------------n~~~~~~~~--~~~~~~w~i~~~~~~~~~~~~~~ 656 (943)
T COG0383 607 ----------ETVIEEKEWKRLIIN-DTG-----------------NQLALIEDE--PAYWDAWNIDKFLEEELLALTAL 656 (943)
T ss_pred ----------cccccccchheeecc-CCC-----------------cceeeeecc--cceechhcchhhhhhhhhhhhcc
Confidence 112233333344444 555 223333321 334556655544332 2222222
Q ss_pred ccEE-EEecCceEEEEEEe---cceEEEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEeeecCCcEEEEccCCcc
Q 001850 668 VPIK-IIRGPMVDEVHQQF---NSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRD 743 (1005)
Q Consensus 668 ~~i~-v~~Gpl~~~v~~~~---~~~i~q~vrL~~~~~~ie~e~~v~~ip~~~~~~~e~~~rf~t~i~s~~~fyTDsnG~~ 743 (1005)
. +. +++||+..++++.. .+.++|.|++++++++|+|++.|++. ..++.+++.|+++++++...|..+.|
T Consensus 657 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~a~~d~~fg-- 729 (943)
T COG0383 657 P-EEAIENGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDFATADIPFG-- 729 (943)
T ss_pred c-cchhccccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEecccccccceeccccce--
Confidence 3 33 68999999988764 46789999999999999999999754 56889999999999998888887777
Q ss_pred eeecccccccccccCCCCCcccceEeecceEEEeeCCce--EEEEecCCcceeeccCcEEEEEEEeee-------ccCCC
Q 001850 744 FLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSE--FSVLVDRATGGASIKDGQVEIMLHRRM-------LADDG 814 (1005)
Q Consensus 744 ~ikR~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~--ltvltdr~~G~~sl~~G~iElmL~Rr~-------~~DD~ 814 (1005)
.++|+++.+++|+.+.++...+.| +.+.|...+ +++++|++||++ .+++.|.|+|+|.. .++|.
T Consensus 730 ~v~Rp~~~~~~W~~a~~e~p~~~~------vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~~~~gd~~~~P~p 802 (943)
T COG0383 730 VVERPTHPNTSWENARFEVPLQKF------VDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSVGELGDWGYRPDP 802 (943)
T ss_pred eeccCCCCchhhhcccCcchhhcc------ccccCCccceeEeccCCcceeEe-ccCCEEEEEecccccccccccccCCc
Confidence 999999999999999888776666 999999998 788999999975 49999999999999 56654
Q ss_pred CccccccccccccccCCCCeeEeeeEEEecccc--CccchhcccchhhhcccceeeeeccccccccccccCccccCcc-C
Q 001850 815 RGVGEALDESVCVRDNCEGLTVRGNYYLSVNQL--GAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMES-D 891 (1005)
Q Consensus 815 rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~--~~~~~~~r~~~~~l~~p~~~~f~~~~~~~~~~~~~~~~~~l~~-~ 891 (1005)
-+ + |-| .+..+|.+..... ..... ...++.++.|........+.. .......++.... .
T Consensus 803 ~A--------d-----~~g-~h~~~y~ly~h~~~~~~~~~--~~~a~~~~~P~~~~~~~~~~~--~~~~~~~~~~~~~~~ 864 (943)
T COG0383 803 EA--------D-----CLG-EHEFTYALYPHQGSFLSAPT--AVRAYELNVPVRTVQVEEDGV--EGTLEATLDLLEPLL 864 (943)
T ss_pred hh--------h-----hcc-ceeEEEEEEEccccccccch--hhhhhhccCceEEeecccccc--cccchhccccccccc
Confidence 32 1 112 1222333332221 11111 123344566665544222110 0001111111100 0
Q ss_pred CCCCCcceEEEeeecCCC-cEEEEEecccccCCCCCCceeeeeehhhhccccccce-eeecccccccchhhccceeeeee
Q 001850 892 YSLPLNVALITLEELDDG-SVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQ-LKEMSLSANQEKLEMKKMTWKVE 969 (1005)
Q Consensus 892 ~~lp~nv~lltl~~~~~~-~illRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~i~~-i~EtsLt~~~~~~~~~r~~w~~~ 969 (1005)
..-|+++.|-.+|+.+|+ .++||+.+...... .. -+.+ .+.+.. ++||.|-.+. .
T Consensus 865 ~~~~~~~~lsA~K~aed~~~~IlR~yn~~~~~~-~~---~~~~-------~l~~~~~~~~~~llE~~----~-------- 921 (943)
T COG0383 865 LVGPDNLILSALKRAEDGDGLILRLYNPSGTKT-LA---LIEL-------SLPVVNAIRETNLLENE----N-------- 921 (943)
T ss_pred cCCCcceEEEeeeecccCCceEEEEeccCCCCc-ce---eeec-------cchhhhhhhhhhhhccc----c--------
Confidence 135889999999999876 69999965433322 10 1111 234444 7777777651 0
Q ss_pred CCCCCcCCCCCCCCCCCCCceEEecCCceeEEEEEC
Q 001850 970 GESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLKF 1005 (1005)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~v~~ 1005 (1005)
++..+. .|+.+|.||.||++..
T Consensus 922 -------------~~~~~~-~i~~~~~ei~t~k~~~ 943 (943)
T COG0383 922 -------------ELETNS-PITPKPVEIVTLKLEL 943 (943)
T ss_pred -------------ccccCC-cccccceEEEEEEeeC
Confidence 000111 5788899999999863
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=5.5e-44 Score=422.49 Aligned_cols=424 Identities=29% Similarity=0.452 Sum_probs=283.0
Q ss_pred EEEEEEcCCCceeeEEEEEEecCCcEEEECCCCCeEeEEEeecccccccccchhhhhccCCCCCCCCcEEEEEEEecCCC
Q 001850 490 LVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPL 569 (1005)
Q Consensus 490 ~~v~vfNpl~~~r~~~V~i~v~~~~v~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~l 569 (1005)
+.|+|||||+|+|+++|+|+++.+.+.+.|.+|++|++|++|... ....++|+|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 579999999999999999999999999999999999999998221 1245789998899999
Q ss_pred ceEEEEEEecCCcccccccceeccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCCeEEe--eeEEEEEeeccCC--
Q 001850 570 GWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVP--IQQSFLWYGSMVD-- 645 (1005)
Q Consensus 570 G~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~--~~~~f~~Y~~~~~-- 645 (1005)
||++|.|...+........... ...+...|||++|+|+||+.+|.|.+|+||++|+++. ..+++..|.+...
T Consensus 62 Gy~~~~i~~~~~~~~~~~~~~~----~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~~ 137 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEASIA----KDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGDY 137 (457)
T ss_dssp EEEEEEEEECSS--TTC--CEE----ETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSCT
T ss_pred eeEEEEeeccccccccccceee----cceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEeccccccc
Confidence 9999999987654432111000 0113479999999999997669999999999999999 8899999975321
Q ss_pred ------CCCCCcceEecCCCcccccCCCccEEEEecC--ceEEEEEEecceEEEEEEEeecCCceeEEEEECCeeccCCC
Q 001850 646 ------TQSSGAYIFRPNGAQPNVVSRSVPIKIIRGP--MVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSV 717 (1005)
Q Consensus 646 ------~~~sgAY~f~P~~~~~~~~~~~~~i~v~~Gp--l~~~v~~~~~~~i~q~vrL~~~~~~ie~e~~v~~ip~~~~~ 717 (1005)
...+|+|.|.|++.....+.-...+. ..+. ++.+......+.++++++|++++++||++++|++.+. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~-~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~---~ 213 (457)
T PF07748_consen 138 DISPLELQRSGAYLFVEDGPLRSSIRVEYKFE-LPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE---D 213 (457)
T ss_dssp TE-SCCCGSEECCEEEEESSSEEEEEEEEEEE-EESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT---S
T ss_pred cccccccccCceEEEEecCCceEEEEEEEEEe-ccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc---C
Confidence 12467777776654211000000000 0111 2233333345689999999999999999999986532 2
Q ss_pred C-cEEEEEEEeeecCCcEEEEccCCcceeec--ccccccccccCCCCCcccceEeecceEEEeeCCceEEEEecCCccee
Q 001850 718 G-KEVISRMTANMVTEKVFYTDSNGRDFLKR--VRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGA 794 (1005)
Q Consensus 718 ~-~e~~~rf~t~i~s~~~fyTDsnG~~~ikR--~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvltdr~~G~~ 794 (1005)
. ++++++|+|++.++..||+|+|| +++| +.. ...+.++|||||.+.++|.|.+.+++|+||+++|++
T Consensus 214 ~~~~l~~~f~t~i~~~~~~~~~~fG--~~~r~~~~~--------~~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~ 283 (457)
T PF07748_consen 214 HRKELRVRFPTNIDSDEAFYDDQFG--FIERKRPTH--------PNTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYE 283 (457)
T ss_dssp CEEEEEEEEEES-S-TCEEEEESTT--EEEEECESS--------TTTTCGGG-EEECSCCEEEECSECEEEEESS-EEEE
T ss_pred CceeEEEEeecCCCCCCEEEECCCC--eEEecCCcc--------ccCCcccccCCCcceEEEEcCCCCEEEEcCCCcceE
Confidence 3 37999999999999999999999 5555 444 236788999999999999999988999999999998
Q ss_pred ecc-CcEEEEEEEeeeccCCCCccccccccccccccCCCCeeEeeeEEEeccccCccchhcccchhhhcccceeeeeccc
Q 001850 795 SIK-DGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEK 873 (1005)
Q Consensus 795 sl~-~G~iElmL~Rr~~~DD~rGvge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~~~~r~~~~~l~~p~~~~f~~~~ 873 (1005)
++. +|+|+|||||++..||++|++ .|.|.+...........+.+..+++|++++.....
T Consensus 284 ~~~~~g~l~ltL~R~~~~D~g~~~~--------------------~~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~~ 343 (457)
T PF07748_consen 284 SLDQDGELELTLLRRPSQDDGRGVF--------------------RYALYPHSGSWDEADVVQEAYELNQPLIVFNSSNI 343 (457)
T ss_dssp ECTTTTEEEEEEEEEBSCG-SSSEE--------------------CCEEEEEEEEEEEEECHHCHHHHTS-EEEESS--T
T ss_pred eccCCCeEEEEEeecccccCCccEE--------------------EEEEEEeccccccccchhhhhhccCccEEeecccc
Confidence 887 999999999999999999966 12222222211111012345689999987622111
Q ss_pred cccccccccCccccCcc-CCCCCCcceEEEe-----eecCCC-----cEEEEEecccccCCCCC---Ccee---eeeehh
Q 001850 874 LETWTESHLTKSTAMES-DYSLPLNVALITL-----EELDDG-----SVLLRLAHLYEEGEDAE---YSTL---AKVELK 936 (1005)
Q Consensus 874 ~~~~~~~~~~~~~~l~~-~~~lp~nv~lltl-----~~~~~~-----~illRl~~~~~~~~~~~---~s~~---~~v~l~ 936 (1005)
.......++++.. ...+|+++|+.+| |+.+++ .++||+.+......... ++.+ +++.+.
T Consensus 344 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sa~K~aed~~~~~~~~ilR~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (457)
T PF07748_consen 344 ----QARQLNSFSGLSLPPEESPLNIHLLNLVVSALKKAEDGSDWSDGLILRLYNPSGKETEASLDFLSKPLSGAEVNLV 419 (457)
T ss_dssp ----TBEE--CE-TCS--SSEESTCECEEEEEEEEEEECTTTSEEETCEEEEEEESSSSTCCCTTCCTSCCTEEEEEEEE
T ss_pred ----ccccccCCCcccccccccccccCCCcccccccccccccccccCCEEEEEEecCCCccccccccCCccceeEEEEec
Confidence 1111122232221 1136777777665 776655 68888866544432222 1334 788888
Q ss_pred hhccccccceeeecccccccchhhccceeeeeeCCCCCcCCCCCCCCCCCCCceEEecCCceeEEE
Q 001850 937 KMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFL 1002 (1005)
Q Consensus 937 ~lf~~~~i~~i~EtsLt~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~ 1002 (1005)
++|....+..+.||++++... .+...|+|+|||||||+
T Consensus 420 ~lle~~~~~~i~e~s~~~~~~----------------------------~~~~~~~l~P~EIkT~r 457 (457)
T PF07748_consen 420 NLLEEPDIEEIEETSLSDPSE----------------------------SNSVELTLKPFEIKTFR 457 (457)
T ss_dssp STTSSSCEEEEEEE-SEEEES----------------------------CGGTCSEE-TTEEEEEE
T ss_pred ccccCCCccceEeeccCCCCC----------------------------CCEeEEEEeCcEEEEEC
Confidence 999988888999999544221 12347899999999996
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.82 E-value=1.8e-21 Score=169.86 Aligned_cols=75 Identities=37% Similarity=0.573 Sum_probs=64.9
Q ss_pred CceeeeeecccchhhHHHHhhhHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHhhccccCCCCCCcccchHHHHHHH
Q 001850 358 AYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGK-----KSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRL 432 (1005)
Q Consensus 358 ~ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (1005)
+||+|||||||.+|+++|.+|++|+.||.+.+++.. .++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 589999999999999999999999999999998532 245567899999999999999999999999999999986
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.79 E-value=7.5e-20 Score=159.22 Aligned_cols=74 Identities=42% Similarity=0.565 Sum_probs=68.2
Q ss_pred ceeeeeecccchhhHHHHhhhHHHHHHHHHHhh-----CCCCCCCchHHHHHHHHhhccccCCCCCCcccchHHHHHHH
Q 001850 359 YWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA-----GKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRL 432 (1005)
Q Consensus 359 ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~~l~-----~~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (1005)
||+|||||||.+|+++|++|++|+.+|.+.+++ +..++...++.+|+.|+++||||+||||++++|++||..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 699999999999999999999999999999885 34566678899999999999999999999999999999874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.8e-19 Score=222.35 Aligned_cols=354 Identities=18% Similarity=0.189 Sum_probs=256.5
Q ss_pred CceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHH
Q 001850 39 GKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQV 117 (1005)
Q Consensus 39 ~~~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~ww~~~~p~~~~~v 117 (1005)
.+..+|+++|+|||++|+.+.+.... .+...++.+++.++++|. .-|..+++....+.+....|+.++++
T Consensus 2 ~~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~ 72 (943)
T COG0383 2 LKKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRV 72 (943)
T ss_pred CccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhH
Confidence 35667999999999999999999986 556669999999999994 44888888876678888899999999
Q ss_pred HHHHHcCCeEEEceee-eeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEe
Q 001850 118 RKLVDASQLEFVNGGW-CMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFA 196 (1005)
Q Consensus 118 k~lV~~GrlE~v~GgW-v~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~ 196 (1005)
+.+++.|++ .+ |.| .+.|.+.++.|+.+|++++|..+ ...+|...+.||.+|.||+..+.|+++. .+|++++.|+
T Consensus 73 ~~~~~~~~l-~i-g~~~~~~~~~~~~~e~~~rn~l~~~~~-~~~~~~~~~~g~~~d~~g~~~qa~~~~~-~~~i~~~~f~ 148 (943)
T COG0383 73 KLLIASGKL-GI-GPWYTQTDTFILSGESNVRNLLIGEFD-AERFGKAMKLGYFPDTFGNLGQAPQLYE-NAGISAVAFG 148 (943)
T ss_pred HHHHhhcCc-cc-cCCCCeeEEEEeccccceeeeecchHH-HHHhhhhhccccccccchhhhhhhHHHH-hcCCchhhcc
Confidence 999999999 44 788 99999999999999999999985 6667799999999999999999999998 9999999999
Q ss_pred ccCHHHH------H---hhhhcCCceeEEecCCCCCCCCceeEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHH
Q 001850 197 RIDYQDR------A---KRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQ 267 (1005)
Q Consensus 197 Ri~~~~k------~---~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~ 267 (1005)
|+..... . .-....-.+..|.+++ +++++.+.++..|..+....- ....-++-
T Consensus 149 r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g~~I~~--------------~ghahid~ 210 (943)
T COG0383 149 RGAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNGNEIPA--------------VGHAHIDT 210 (943)
T ss_pred cccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhccccccc--------------cchhhHHH
Confidence 9763211 0 0111233467788888 788888888888877643210 00011233
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhcC-CceeEEEcC----hhhHHHHHHhc-CCC
Q 001850 268 WVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG-GRVNALYST----PSLYTEAKNAA-NGP 341 (1005)
Q Consensus 268 ~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~~-~~~~i~~sT----~~~Yf~~v~~~-~~~ 341 (1005)
.+..-++..++.+ .+..++++.|+|..+.. .++...+++.|.- ......|+- ...|+...... ...
T Consensus 211 aWlw~l~et~r~a---~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERKA---STSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHHH---hhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 3333345555554 45677899999986554 6777777777742 233333444 33444333221 234
Q ss_pred CCCccCCCccccccCCCc----e--eeeeecccchhhHHHHhhhHHH-HHHHHHH-------h---hCCCCCCCchHHHH
Q 001850 342 WPLKTDDYFPYADRRNAY----W--TGFFTSRPALKGYVRVLSGFYL-ASRQLEF-------L---AGKKSPGPTTSALG 404 (1005)
Q Consensus 342 ~p~~~gDf~py~~~~~~y----w--tG~yTSRp~~K~~~R~~e~~L~-~ae~l~~-------l---~~~~~~~~~~~~l~ 404 (1005)
.++.+||+.. +...| . ...-+||..+|..+-..+..|- -++.+.. + .+..+|...+.-.|
T Consensus 283 ~n~~sGEsls---rq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~ 359 (943)
T COG0383 283 LNTPSGESLS---RQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRW 359 (943)
T ss_pred CCccccchhh---hhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeec
Confidence 6888999872 22223 1 2344899999998766666554 1222222 1 12334555566679
Q ss_pred HHHHhhccccCCCCCCcccchHHHHHHHHH
Q 001850 405 DALGIAQHHDAVTGTAKQHTTNDYAKRLAI 434 (1005)
Q Consensus 405 ~~l~~~QhHDaItGTs~~~V~~dy~~rl~~ 434 (1005)
+.+..++.||.+|||+.+.|+.+...|...
T Consensus 360 ~dg~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 360 KDGTENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred ccccccceeecCCCCcccHHHHHHHhhhhh
Confidence 999999999999999999999998888765
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.37 E-value=1.7e-06 Score=98.90 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHH-----------------------------------------
Q 001850 75 VENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEI----------------------------------------- 113 (1005)
Q Consensus 75 v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~----------------------------------------- 113 (1005)
..+.+--++..|++.|+.|++.+=...+.+|++...+..
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 455566777788888778877765566668887777777
Q ss_pred -----HHHHHHHHHcCCeEEEceeeeeecccCCCh-HHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhh
Q 001850 114 -----QEQVRKLVDASQLEFVNGGWCMHDEATTHY-VDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVE 187 (1005)
Q Consensus 114 -----~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~-es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~ 187 (1005)
.+.+|+|+++|++|++++++..+=-.+..- +++..|+..|.+.+++.||.+|+..|.+.. +.+..+..+++ +
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE~-a~~~~l~~~l~-~ 185 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPEC-AYSPGLEEILA-E 185 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GGG--B-TTHHHHHH-H
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECccc-ccCHHHHHHHH-H
Confidence 899999999999999999998887777777 999999999999999999999999999974 78899999998 9
Q ss_pred cCCcEEEEec
Q 001850 188 LGFDSVHFAR 197 (1005)
Q Consensus 188 ~G~~~~~~~R 197 (1005)
+||+++++.-
T Consensus 186 ~Gi~~~i~d~ 195 (360)
T PF03065_consen 186 AGIRYTILDG 195 (360)
T ss_dssp TT--EEEEEC
T ss_pred cCCEEEEECc
Confidence 9999999863
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.021 Score=64.27 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCc----------EEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCC-
Q 001850 73 ACVENVLDSVVEALRRDPNRK----------FVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATT- 141 (1005)
Q Consensus 73 ~~v~~il~~vl~~L~~~p~~k----------F~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~- 141 (1005)
....+-|+..++.+++...|. |..-+-.-....|+..+...-+++|++.++|.+|+++++-+-.---+-
T Consensus 75 ~ry~~~Le~~~el~e~e~~R~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~ 154 (504)
T COG1543 75 DRYLRYLEWKIELSEKEEKRYADQSLRELAEFYIPEFLNARGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLG 154 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcC
Confidence 345556666666665543321 211111123467888889999999999999999999877644332222
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEe
Q 001850 142 HYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFA 196 (1005)
Q Consensus 142 ~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~~~~~~~ 196 (1005)
..|++--|+..|.+-..++||..|+--|.| --++...++.+|+ ..||++++.-
T Consensus 155 ~peAi~AQi~~g~~~ye~~fg~~P~GiWlP-Ecay~pgie~~l~-~~Gi~yf~vd 207 (504)
T COG1543 155 GPEAIEAQILTGIELYEEHFGLAPKGIWLP-ECAYAPGIERILK-DAGIEYFFVD 207 (504)
T ss_pred CchhhHHHHHHHHHHHHHHhCCCCCceech-hhccccchHHHHH-hcCceEEEec
Confidence 248889999999998888999999999999 4589999999998 9999999985
No 14
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.64 E-value=0.12 Score=48.79 Aligned_cols=103 Identities=20% Similarity=0.303 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHH
Q 001850 77 NVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHH 155 (1005)
Q Consensus 77 ~il~~vl~~L~~~p~-~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~ 155 (1005)
..+..+++.|+++.- ..|-.... +..+ ..+.+++++++| +||.+-||.-.+....+.+.+.+++..+.+
T Consensus 18 ~~~~~~~~~l~~~~i~at~fv~~~-~~~~--------~~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~ 87 (123)
T PF01522_consen 18 DNYDRLLPLLKKYGIPATFFVIGS-WVER--------YPDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSRE 87 (123)
T ss_dssp THHHHHHHHHHHTT--EEEEE-HH-HHHH--------HHHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccceeeeeccc-cccc--------ccccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHH
Confidence 456788888888742 22322222 2222 268899999999 999999999888889999999999999999
Q ss_pred HHHHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCcE
Q 001850 156 YIKQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFDS 192 (1005)
Q Consensus 156 ~l~~~fG~~p~v~w~iD~FGh-s~~~p~ll~~~~G~~~ 192 (1005)
+|++.+|..|+ +-.=|||. +...-++++ ++||++
T Consensus 88 ~l~~~~g~~~~--~f~~P~g~~~~~~~~~l~-~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGRPPK--GFRYPFGSYDDNTLQALR-EAGYKY 122 (123)
T ss_dssp HHHHHHSSEES--EEE-GGGEECHHHHHHHH-HTT-EE
T ss_pred HHHHHhCCCCc--EEECCCCCCCHHHHHHHH-HcCCCc
Confidence 99999999544 35568885 677778987 999986
No 15
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=94.45 E-value=1.2 Score=54.28 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=76.4
Q ss_pred EEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCC----ChHHHHHHHHHHHHHHHHHcCCCCceee
Q 001850 94 FVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATT----HYVDMIDQTTLGHHYIKQHFNKTPKAGW 169 (1005)
Q Consensus 94 F~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~----~~es~I~ql~~G~~~l~~~fG~~p~v~w 169 (1005)
|++++..-+..+-..-.+...+.+|++++.|+.|++.-++--+=-++. -++++++|+..+.+..++-||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 777763333344455577889999999999999999888843322222 4569999999999999999999999988
Q ss_pred ecCCCCCChhhHHHHhhhcCCcE
Q 001850 170 QIDPFGHSAVQAYLLGVELGFDS 192 (1005)
Q Consensus 170 ~iD~FGhs~~~p~ll~~~~G~~~ 192 (1005)
.+- +=.+..+..+++ .+||..
T Consensus 242 ~tE-l~y~~~i~~~~~-e~G~~~ 262 (615)
T COG1449 242 NTE-LAYNDQILEYFE-ESGFSW 262 (615)
T ss_pred Chh-hhccHHHHHHHH-HcCCcc
Confidence 774 557888999998 999994
No 16
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=93.89 E-value=5.1 Score=44.33 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHH
Q 001850 75 VENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLG 153 (1005)
Q Consensus 75 v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G 153 (1005)
.+.=+-.+++.|+++-- -+|-.. -|+.+.+| +.+|+.+++| .||.+=||...+-..-+.+...++|..+
T Consensus 75 ~rvG~~RiLdlL~~~gv~aTffv~------g~~~e~~P---~~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s 144 (297)
T TIGR03212 75 SRAGFWRLLRLFTERGIPVTVFGV------AMALARNP---EAVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEA 144 (297)
T ss_pred chhCHHHHHHHHHHcCCCEEEEeE------HHHHHHCH---HHHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHH
Confidence 44556778899988743 335433 33445666 4677778899 9999999977776677889999999999
Q ss_pred HHHHHHHcCCCCceeeecCCCCCChhhHHHHhhh-cCCcEEEEeccC
Q 001850 154 HHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVE-LGFDSVHFARID 199 (1005)
Q Consensus 154 ~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~-~G~~~~~~~Ri~ 199 (1005)
.+-|++..|.+| .||.. -.+|..++.|++ + .||.+..-+..+
T Consensus 145 ~~~i~~~tG~~P-~G~~~--~~~s~~T~~LL~-e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 145 IRLHTEVTGERP-LGWYT--GRTSPNTRRLVA-EEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHHHhCCCC-ceEEC--CCCChhHHHHHH-HhcCceEeCchhhc
Confidence 998888888775 46753 358999999997 8 999987766544
No 17
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=93.63 E-value=0.47 Score=48.92 Aligned_cols=101 Identities=18% Similarity=0.326 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCC-cEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHH
Q 001850 80 DSVVEALRRDPNR-KFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIK 158 (1005)
Q Consensus 80 ~~vl~~L~~~p~~-kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~ 158 (1005)
..+++.|+++--+ +|-.... |.+.+| +.+|+++++|- ||-+-+|.-++-..-+.+.+.+++..+.+.|+
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~------~~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS------WAERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH------HHHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 4567778776432 3333322 223344 67899999995 89999998888778889999999999999999
Q ss_pred HHcCCCCceeeecCCCC-CChhhHHHHhhhcCCcEE
Q 001850 159 QHFNKTPKAGWQIDPFG-HSAVQAYLLGVELGFDSV 193 (1005)
Q Consensus 159 ~~fG~~p~v~w~iD~FG-hs~~~p~ll~~~~G~~~~ 193 (1005)
+..|..|+ |-.=|+| ++..+..+++ +.||..+
T Consensus 92 ~~~g~~~~--~fr~P~G~~~~~~~~~l~-~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPT--LFRPPSGAFNKAVLKAAE-SLGYTVV 124 (191)
T ss_pred HHhCCCCC--EEECCCcCCCHHHHHHHH-HcCCeEE
Confidence 99998876 5566787 4566777887 8998843
No 18
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=93.11 E-value=0.52 Score=50.03 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=76.5
Q ss_pred HHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHH
Q 001850 81 SVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQ 159 (1005)
Q Consensus 81 ~vl~~L~~~p~-~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~ 159 (1005)
.+++.|+++-- .+|-..+. | .+..| +.+|+++++|- ||-+-+|.-.+-...+.+.+.+++....+.|.+
T Consensus 54 ~lL~~L~~~~vkATFFv~G~-----~-~~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~ 123 (224)
T TIGR02884 54 KILDVLKEKKVPAAFFVTGH-----Y-IKTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKK 123 (224)
T ss_pred HHHHHHHHcCCCeEEEeech-----h-hHHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHHH
Confidence 57788887743 33443332 2 23344 68899999995 798999987777778899999999999999999
Q ss_pred HcCCCCceeeecCCCC-CChhhHHHHhhhcCCcEE
Q 001850 160 HFNKTPKAGWQIDPFG-HSAVQAYLLGVELGFDSV 193 (1005)
Q Consensus 160 ~fG~~p~v~w~iD~FG-hs~~~p~ll~~~~G~~~~ 193 (1005)
..|..+ ..|--=|+| ++..+..+++ ++|+..+
T Consensus 124 ~~G~~~-~~~fR~P~G~~~~~~~~~l~-~~Gy~~v 156 (224)
T TIGR02884 124 VTGQKE-MKYFRPPRGVFSERTLAYTK-ELGYYTV 156 (224)
T ss_pred HhCCCC-CCEEeCCCCCcCHHHHHHHH-HcCCcEE
Confidence 999762 237777999 5777888887 9999854
No 19
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=90.43 E-value=2.2 Score=46.46 Aligned_cols=111 Identities=19% Similarity=0.274 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHH
Q 001850 74 CVENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTL 152 (1005)
Q Consensus 74 ~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~ 152 (1005)
.|...+..+++.|+++-- .+|-..+ |+.+..| +.+|+++++| .||.+=||.-.+-..-+.+.+.+++..
T Consensus 25 rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~ 94 (265)
T TIGR03006 25 RVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRR 94 (265)
T ss_pred hHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHH
Confidence 677788899999998753 3444432 3444555 5699999999 699999997776666788999999999
Q ss_pred HHHHHHHHcCCCCceeeecCC--CCCC-hhhHHHHhhhcCCcEEEEe
Q 001850 153 GHHYIKQHFNKTPKAGWQIDP--FGHS-AVQAYLLGVELGFDSVHFA 196 (1005)
Q Consensus 153 G~~~l~~~fG~~p~v~w~iD~--FGhs-~~~p~ll~~~~G~~~~~~~ 196 (1005)
..+.|.+..|..|+ +|-.=. +|.. .....+++ ++||.+..-.
T Consensus 95 s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL~-e~Gy~YdsS~ 139 (265)
T TIGR03006 95 SKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVLA-EAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHHH-HCCCEEEEee
Confidence 99999988898776 454333 3332 33468997 9999976544
No 20
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=89.89 E-value=45 Score=41.14 Aligned_cols=151 Identities=20% Similarity=0.350 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCeEEEceeeeeeccc--------------------CCChH-------HHHHHHHHHHHHHHHHcCCCCce
Q 001850 115 EQVRKLVDASQLEFVNGGWCMHDEA--------------------TTHYV-------DMIDQTTLGHHYIKQHFNKTPKA 167 (1005)
Q Consensus 115 ~~vk~lV~~GrlE~v~GgWv~~Dea--------------------~~~~e-------s~I~ql~~G~~~l~~~fG~~p~v 167 (1005)
++||+++++|-+||-+=+|..|.-. ...|| .+.+.+....+.|++..|..|++
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 6899999999999988888655311 11232 26678999999999999998884
Q ss_pred eeecCCCC-CChhhHHHHhhhcCCcEEEEeccCHHHHHhhhhcCCceeEEecCCCCCCCCceeEeecCCCCCCCCCCCcc
Q 001850 168 GWQIDPFG-HSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFE 246 (1005)
Q Consensus 168 ~w~iD~FG-hs~~~p~ll~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~Y~~p~~f~f~ 246 (1005)
-.=||| ++.....+++ ++||...+..+-... . ....+ .+|+.-
T Consensus 248 --FayPyG~~n~~~~~iak-eaGY~~afT~~~G~~---------------~-------~~~~~--~LpRi~--------- 291 (671)
T PRK14582 248 --WVWPYGEANGIALEELK-KLGYDMAFTLESGLA---------------N-------ASQLD--SIPRVL--------- 291 (671)
T ss_pred --EecCCCCCCHHHHHHHH-HCCCeEEEEeCCCCC---------------C-------CCCcC--ccceEE---------
Confidence 677999 4667788887 999998887542210 0 00010 112110
Q ss_pred cCCCCCCccCCCCCCcccHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCc-cchHHHHHHHHHHHHHHhcCC
Q 001850 247 LTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQY-QYAESWFKQMDKLIHYVNKGG 319 (1005)
Q Consensus 247 ~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~-~~a~~~~~~~~~li~~~N~~~ 319 (1005)
+..++ . ++.|...+.... .....+++-.+-|+-| .++..+-++++.+|+.+.+.+
T Consensus 292 -------I~~~~-----s----l~~f~~~v~~~~--~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G 347 (671)
T PRK14582 292 -------IANNP-----S----LKEFAQQIITVQ--EKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQ 347 (671)
T ss_pred -------ecCCC-----C----HHHHHHHHhccc--CCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 00011 1 234544443321 2455677777888888 567778899999999998765
No 21
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=89.33 E-value=3.1 Score=45.40 Aligned_cols=101 Identities=21% Similarity=0.382 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHH
Q 001850 79 LDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYI 157 (1005)
Q Consensus 79 l~~vl~~L~~~p~-~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l 157 (1005)
...+++.|+++-- .+|-..+. | .+.+| +.+|+++++|- ||-|=+|.-++...-+.+.+.++|..+.+.|
T Consensus 100 t~~iL~iLkk~~vkATFFv~G~-----~-i~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i 169 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEGK-----W-VKENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEII 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeehH-----h-hhHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHH
Confidence 4467888887753 33444432 2 23455 46888899995 7999999888888888999999999999999
Q ss_pred HHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCcE
Q 001850 158 KQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFDS 192 (1005)
Q Consensus 158 ~~~fG~~p~v~w~iD~FGh-s~~~p~ll~~~~G~~~ 192 (1005)
++..|..|+ |-.=|+|. +..+..+++ ++||..
T Consensus 170 ~~~~G~~p~--~fRpP~G~~n~~~~~~l~-~~G~~~ 202 (268)
T TIGR02873 170 EATIGVTPK--WFAPPSGSFNDNVVQIAA-DLQMGT 202 (268)
T ss_pred HHHhCCCCC--EEECCCCCCCHHHHHHHH-HCCCeE
Confidence 999999887 77779996 567777887 899864
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=86.08 E-value=3.6 Score=50.39 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCeEEEceeeeeecc--------------------cCCChHH-------HHHHHHHHHHHHHHHcCCCCc
Q 001850 114 QEQVRKLVDASQLEFVNGGWCMHDE--------------------ATTHYVD-------MIDQTTLGHHYIKQHFNKTPK 166 (1005)
Q Consensus 114 ~~~vk~lV~~GrlE~v~GgWv~~De--------------------a~~~~es-------~I~ql~~G~~~l~~~fG~~p~ 166 (1005)
.++||+++++|-+||-+=+|..+.- ....+|+ +-+.+....+.|++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3689999999999998888876631 1223443 566788888999999999888
Q ss_pred eeeecCCCC-CChhhHHHHhhhcCCcEEEEec
Q 001850 167 AGWQIDPFG-HSAVQAYLLGVELGFDSVHFAR 197 (1005)
Q Consensus 167 v~w~iD~FG-hs~~~p~ll~~~~G~~~~~~~R 197 (1005)
. -.=||| ++...-.+++ ++||...+..+
T Consensus 247 ~--FayPyG~yn~~~~~iak-~aGy~~afTt~ 275 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNILR-QHGYQLAMTLD 275 (672)
T ss_pred E--EEcCCCCcCHHHHHHHH-HCCCcEEEECC
Confidence 4 667999 4777889988 99999888765
No 23
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=71.50 E-value=1.7e+02 Score=32.43 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCeEEEceeeeee----cccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHhhhcCC
Q 001850 115 EQVRKLVDASQLEFVNGGWCMH----DEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 190 (1005)
Q Consensus 115 ~~vk~lV~~GrlE~v~GgWv~~----Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGhs~~~p~ll~~~~G~ 190 (1005)
+.+|+.+++ .|+.+=||.-. ....-+.+.+.++|..+.+-|++..|..|+ +|-+=-+-.+..+..++. ++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll~-e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAKE-AFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHHH-HcCC
Confidence 457777777 99988899644 344567788999999999989888998765 455545556788899987 9999
Q ss_pred cEEEEeccC
Q 001850 191 DSVHFARID 199 (1005)
Q Consensus 191 ~~~~~~Ri~ 199 (1005)
.+-.-.|.+
T Consensus 168 ~Y~Ss~~~d 176 (296)
T PRK15394 168 RYNSDCRGT 176 (296)
T ss_pred eeecCCCCC
Confidence 988655543
No 24
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=69.39 E-value=37 Score=33.19 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=55.4
Q ss_pred CceEec-CCeEEEEEEcCCCcEEEEEecCCCeEEeeeEEEEEeeccCCCCCCCcceEecCCCcccccCCCccEEEEecCc
Q 001850 599 KTVEVG-PGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPM 677 (1005)
Q Consensus 599 ~~~~ie-N~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~~~~~sgAY~f~P~~~~~~~~~~~~~i~v~~Gpl 677 (1005)
..-+|+ ++.|+|+++..++.+. |++|++|....+-.+=.+.. +++...+++|.-. ..+.+....+|.|..=|.
T Consensus 8 gkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~---~Gdg~~~fDFk~~--~tf~L~DGTKItV~T~p~ 81 (171)
T PF07481_consen 8 GKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDA---DGDGKTDFDFKGD--MTFQLDDGTKITVDTVPW 81 (171)
T ss_pred CeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCcccc---CCCcccceeecCc--eEEEeCCCCEEEEeeeec
Confidence 345666 7789999996678888 99999998877544332221 1233346888733 235555555666543333
Q ss_pred eEEEEEEecceEEEEEEEeecCCceeEE
Q 001850 678 VDEVHQQFNSWIYQVTRLYIDKEHAEVE 705 (1005)
Q Consensus 678 ~~~v~~~~~~~i~q~vrL~~~~~~ie~e 705 (1005)
-.. ..+.-.+.+-++...+.++
T Consensus 82 gng------~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 82 GNG------MTYASKLTITNGDNAWQVE 103 (171)
T ss_pred CCC------cEEeeeEEEEcCCceEEEe
Confidence 221 1233344555666555554
No 25
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=58.70 E-value=9.9 Score=31.04 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHcCCeEEEceee
Q 001850 111 PEIQEQVRKLVDASQLEFVNGGW 133 (1005)
Q Consensus 111 p~~~~~vk~lV~~GrlE~v~GgW 133 (1005)
++.++-+-++|++|+||++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 35566688999999999998876
No 26
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=52.53 E-value=12 Score=36.07 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEcee
Q 001850 74 CVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGG 132 (1005)
Q Consensus 74 ~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~Gg 132 (1005)
....-|..|-+.|.++|.+.-+..|++ +.+.-..+.|.++|++|||++...+
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~-------e~tgVs~~~I~~~IreGRL~~~~~~ 78 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIV-------EETGVSEKLILKFIREGRLQLKHFP 78 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH-------HHHCcCHHHHHHHHHcCCeeccCCC
Confidence 556788889999999999877765554 3344456889999999999988543
No 27
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=37.24 E-value=46 Score=30.94 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=47.2
Q ss_pred EEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHH
Q 001850 42 NVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLV 121 (1005)
Q Consensus 42 ~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV 121 (1005)
+|.=+|=.|.|.--+...+.-+. .+.+++-.|+..+..... +||. .-++++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~~---------~~arvIg~vl~~~~~~i~------------D~f~------~~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEFQ---------KAARVIGEVLGHSDQGIG------------DWFL------EYRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCcccc---------HHHHHHHHHHHhcCcCCC------------hHHH------HHHHHHHH
Confidence 56666778888888876555553 677888888887532211 3332 25899999
Q ss_pred HcCCeEEEceeeeeec
Q 001850 122 DASQLEFVNGGWCMHD 137 (1005)
Q Consensus 122 ~~GrlE~v~GgWv~~D 137 (1005)
++|+||+.|-.-.|.+
T Consensus 93 ~~G~le~~g~~~~mr~ 108 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMRH 108 (111)
T ss_pred HCCCEEEecCCCcccc
Confidence 9999999865555544
No 28
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=29.91 E-value=92 Score=32.88 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=61.6
Q ss_pred CceeeeecCCCCccCCceEEEEEeccc------cCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEe
Q 001850 24 GSDYVKYNTGAGVVAGKLNVHLVAHSH------DDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFA 97 (1005)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~VhlvpHSH------~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~ 97 (1005)
.+-|++.+-.=...++..+|++|-..- .=--|-+|.-=-- +....+--+-.|+.-+++=|..-|+..
T Consensus 135 RaGwigCnI~l~~iPesGkI~lv~~~~~~~~~~V~~~~~~tlfLr~-------~~~~~rGWlldi~~cid~i~~~~FtL~ 207 (254)
T PF06044_consen 135 RAGWIGCNIDLSKIPESGKIFLVKNGQIIPPEEVLEQWQKTLFLRT-------QNIESRGWLLDIMKCIDKIPKNEFTLD 207 (254)
T ss_dssp ---EEEEEEEGGGS-GGG-EEEEETTEE--HHHHHHHHHHGGGGGG-------S-HHHHHHHHHHHHHHHHS-SSEEEHH
T ss_pred cCCcceeeeecccCCCcceEEEEeCCeEcCHHHHHHHHHHHHHHHh-------ccccccchHHHHHHHHHhcCccceeHH
Confidence 334444332224456778888875432 2122333321110 113456667788888888898999999
Q ss_pred chHHHHHHHhhcChH-------HHHHHHHHHHcCCeEEEcee
Q 001850 98 EMAFFHRWWVGQSPE-------IQEQVRKLVDASQLEFVNGG 132 (1005)
Q Consensus 98 e~~~~~~ww~~~~p~-------~~~~vk~lV~~GrlE~v~Gg 132 (1005)
++.-|+.-....+|. .|++++.|-..|-+||++-|
T Consensus 208 diY~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG 249 (254)
T PF06044_consen 208 DIYAFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRG 249 (254)
T ss_dssp HHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STT
T ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCC
Confidence 999898888888774 56777777889999999755
No 29
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=28.94 E-value=4.4e+02 Score=28.83 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=28.6
Q ss_pred ecCCeEEEEEEcCCCcEEEEEecCCCeEEee-eEEEEEeeccCCCCCCCc
Q 001850 603 VGPGNLKMSFSRTTGQLKRMYNSRTGVDVPI-QQSFLWYGSMVDTQSSGA 651 (1005)
Q Consensus 603 ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~-~~~f~~Y~~~~~~~~sgA 651 (1005)
|.++..++.||..+|.|.++.- .|+++.. ...+.++.+..|.+.+..
T Consensus 2 V~g~~f~~~Fdk~~G~l~s~~~--~g~~ll~~~~~~nfwRApTDND~~~~ 49 (276)
T PF02929_consen 2 VSGKDFSYVFDKKTGTLTSYKY--NGKELLKRGPKPNFWRAPTDNDRGIG 49 (276)
T ss_dssp EEETTEEEEEETTTTCEEEEEE--TTEEEECEEEEEE---S--TCCCTTT
T ss_pred CccCCEEEEEECCCCeEEEEEE--CCEEeecCCCcccEEeCCCCCccccc
Confidence 5566789999999999999874 4677653 345555655444444433
No 30
>PRK12465 xylose isomerase; Provisional
Probab=28.94 E-value=89 Score=35.76 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHHHhccccC--CCeEEEeecCCCCccchHHHHHHHHHHHHHHhc---CCceeEEEcChhhHH
Q 001850 263 YNVEQWVNDFIDAALTQANVTR--DNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK---GGRVNALYSTPSLYT 332 (1005)
Q Consensus 263 ~nv~~~~~~~~~~~~~~~~~~~--t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~---~~~~~i~~sT~~~Yf 332 (1005)
...+.|++...+.+.+..-.|- ++.=++|.|.+.+ +..+|++++++++.+ ...+++.++|+.-|.
T Consensus 85 ~~Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~s~~-----E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs 154 (445)
T PRK12465 85 ARAEAKSDAAFEFFTKLGVPYYCFHDIDLAPDADDIG-----EYESNLKHMVGIAKQRQADTGIKLLWGTANLFS 154 (445)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeccccccCCCCCCHH-----HHHHHHHHHHHHHHHHhhhhCceeeeecccccc
Confidence 4566778877787877764442 3444577776543 344789998888874 357888889887764
No 31
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=26.91 E-value=4.2e+02 Score=30.22 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.7
Q ss_pred CceEecCCeEEEEEEcCCCcEEEEEecC
Q 001850 599 KTVEVGPGNLKMSFSRTTGQLKRMYNSR 626 (1005)
Q Consensus 599 ~~~~ieN~~~~v~~d~~~G~l~si~dk~ 626 (1005)
..++|+|+.++++|+...|.|.++.-|+
T Consensus 74 ~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 74 KRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CeEEEECCeEEEEEeCCCceeeeecccc
Confidence 4689999999999998788999886553
No 32
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=26.79 E-value=2.6e+02 Score=30.20 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.2
Q ss_pred eEecCCeEEEEEEcCCCcEEEEEec
Q 001850 601 VEVGPGNLKMSFSRTTGQLKRMYNS 625 (1005)
Q Consensus 601 ~~ieN~~~~v~~d~~~G~l~si~dk 625 (1005)
++|||+.++++|+...|.|+++.-|
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk 26 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELK 26 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCeEEEEEcC
Confidence 6899999999999889999988654
No 33
>PRK10148 hypothetical protein; Provisional
Probab=25.87 E-value=25 Score=34.54 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.9
Q ss_pred CceeeecCCCCCChhhHH
Q 001850 165 PKAGWQIDPFGHSAVQAY 182 (1005)
Q Consensus 165 p~v~w~iD~FGhs~~~p~ 182 (1005)
++.||..|+||++|++-.
T Consensus 123 ~~~g~v~D~fGi~W~l~~ 140 (147)
T PRK10148 123 HGFGKVTDKFGVPWMINV 140 (147)
T ss_pred hccEEEECCCCCEEEEEe
Confidence 468999999999997643
No 34
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=23.84 E-value=5.1e+02 Score=27.23 Aligned_cols=115 Identities=16% Similarity=0.242 Sum_probs=80.8
Q ss_pred CCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCC-CcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEce
Q 001850 53 VGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNG 131 (1005)
Q Consensus 53 ~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~-~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~G 131 (1005)
.--.-|||+.+. .. ....+++.|+++-- .+|-... .|.+..|+..+++. ++|.- +-+-
T Consensus 65 k~v~lTFDDg~~--------~~---~~~~il~iL~k~~i~ATfFv~g------~~i~~~p~~~~~~~---~~Ghe-ig~H 123 (267)
T COG0726 65 KAVALTFDDGPL--------DG---NTPRILPLLKKYGIKATFFVVG------SWIERNPDLVKRIA---EAGHE-IGNH 123 (267)
T ss_pred CeEEEEeecCCC--------CC---CcHHHHHHHHHcCCceEEEEeh------HhhHHCHHHHHHHH---hccCe-ehhC
Confidence 444568888875 21 67788888887743 3455444 45566665544444 46654 7778
Q ss_pred eeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCC-ChhhHHHHhhhcCCc
Q 001850 132 GWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFD 191 (1005)
Q Consensus 132 gWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FGh-s~~~p~ll~~~~G~~ 191 (1005)
+|--.+....+.+.+..++...+..+.+..|..|+ |..-|.|. +...-.+.+ ..|+.
T Consensus 124 ~~~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~~--~~r~p~g~~~~~~~~~~~-~~g~~ 181 (267)
T COG0726 124 GYDHPDLQDLSLEELGAEIARAHDILKKITGGRPR--GFRPPYGSYNESSLALAR-RLGYR 181 (267)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc--eEECCCCccCHHHHHHHH-hCCCc
Confidence 99888888888888999999999999999999844 56667774 355666666 78876
No 35
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=22.41 E-value=1.9e+02 Score=35.65 Aligned_cols=110 Identities=16% Similarity=0.258 Sum_probs=71.2
Q ss_pred CchhhHHhhhccCCccchhhhHHHHHHHHHHHHHc--CCCCcEEEechHH--HHHHHhhcChHHH-HHHHHHHHcCCeEE
Q 001850 54 GWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRR--DPNRKFVFAEMAF--FHRWWVGQSPEIQ-EQVRKLVDASQLEF 128 (1005)
Q Consensus 54 gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~--~p~~kF~~~e~~~--~~~ww~~~~p~~~-~~vk~lV~~GrlE~ 128 (1005)
.=|.+||+||. ..+...-.+.-+| +|.|.|..++..| +.-| .++..+ .-.+.|+.=|=
T Consensus 54 ~~L~~FE~yy~-----------~TL~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw---~sa~dFgt~~hTLigY~v--- 116 (682)
T PHA03393 54 DDLDTFERYYK-----------NTLTQKFLQKAEKIANPTRQFSDDDNIFDGLSPW---TSANDFGTLCHTLIGYCV--- 116 (682)
T ss_pred hHHHHHHHHHH-----------HHHHHHHHhhhhhhcCCcccccCCCceecCCccc---cCHHHHHHHHHHHHhheE---
Confidence 45899999996 1122222334444 8998899777666 4333 233333 33455543321
Q ss_pred EceeeeeecccCCChHHHHHHHHHHHHHHHHHcCCCCceeeecCCCC-------CChhhHHHHh
Q 001850 129 VNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFG-------HSAVQAYLLG 185 (1005)
Q Consensus 129 v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~v~w~iD~FG-------hs~~~p~ll~ 185 (1005)
=|..++.++-.-..+..++..|++++.+++...|. ++-.|+| .|=+||..|-
T Consensus 117 ---ry~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p--~~qaPWG~~~dWy~FsItmPE~~m 175 (682)
T PHA03393 117 ---RYNNPNDALYQDPELAYNLINALRLIYSHLPDPAP--HQQAPWGPVADWYHFSITMPECFM 175 (682)
T ss_pred ---EecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCc--ccCCCCCCcCceeeEEccHHHHHH
Confidence 24556666777778999999999999999998763 2445666 6778888874
No 36
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=22.29 E-value=16 Score=33.63 Aligned_cols=27 Identities=22% Similarity=0.663 Sum_probs=23.8
Q ss_pred HHHhhcChHHHHHHHHHHHcCCeEEEceee
Q 001850 104 RWWVGQSPEIQEQVRKLVDASQLEFVNGGW 133 (1005)
Q Consensus 104 ~ww~~~~p~~~~~vk~lV~~GrlE~v~GgW 133 (1005)
.||+. ...+.+++.||+.|++ +++|||
T Consensus 75 ~~W~~--~~~R~~~~rll~~a~~-l~~gGY 101 (106)
T PF10074_consen 75 DEWKD--SSLRRRVRRLLRRARA-LMEGGY 101 (106)
T ss_pred ccccC--hHHHHHHHHHHHHHHH-HHHhhH
Confidence 57865 7889999999999999 889998
No 37
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=21.26 E-value=1e+02 Score=23.49 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHhhcChHH-HHHHHHHHHcCCeEEEceeeee
Q 001850 104 RWWVGQSPEI-QEQVRKLVDASQLEFVNGGWCM 135 (1005)
Q Consensus 104 ~ww~~~~p~~-~~~vk~lV~~GrlE~v~GgWv~ 135 (1005)
.|..+..... +.+.++++++|++ .|||-=+.
T Consensus 5 ~~L~~~~~~~sr~~a~~~I~~g~V-~VNg~~v~ 36 (48)
T PF01479_consen 5 KFLSRLGLASSRSEARRLIKQGRV-KVNGKVVK 36 (48)
T ss_dssp HHHHHTTSSSSHHHHHHHHHTTTE-EETTEEES
T ss_pred HHHHHcCCcCCHHHHHHhcCCCEE-EECCEEEc
Confidence 3444555554 9999999999999 78887654
No 38
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=20.88 E-value=4.2e+02 Score=21.11 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCCcEEEechHHHHHHHhhcChHHHHHHHHHHHcCCeEEEceeeeeecc
Q 001850 81 SVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDE 138 (1005)
Q Consensus 81 ~vl~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~~~~vk~lV~~GrlE~v~GgWv~~De 138 (1005)
.+++.|.+++. ....|.+ +-+.-...+.+..+..|.+.|.+.=+-||++..|+
T Consensus 4 ~Il~~l~~~~~--~s~~ela---~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~~~ 56 (57)
T PF08220_consen 4 QILELLKEKGK--VSVKELA---EEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVLNDS 56 (57)
T ss_pred HHHHHHHHcCC--EEHHHHH---HHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEeCCC
Confidence 45666666532 3333332 33544566778889999999999999999987664
No 39
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=20.65 E-value=3.1e+02 Score=33.71 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=66.9
Q ss_pred HHHHh-hcChHHHHHHHHHHH-----------cCCeEEEceee--eeecccCCChHHHHHHHHHH-HHHHHHHcCC---C
Q 001850 103 HRWWV-GQSPEIQEQVRKLVD-----------ASQLEFVNGGW--CMHDEATTHYVDMIDQTTLG-HHYIKQHFNK---T 164 (1005)
Q Consensus 103 ~~ww~-~~~p~~~~~vk~lV~-----------~GrlE~v~GgW--v~~Dea~~~~es~I~ql~~G-~~~l~~~fG~---~ 164 (1005)
.+|.. ..+|.+|+++++|++ ..+++|=++|| ++.+..+.--...+.++..| -+|+.+.+|. .
T Consensus 10 ~~wl~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~i~FGT~GiRG~~g~~~~~~n~~~v~~~~~a~a~~l~~~~~~~~~~ 89 (584)
T PTZ00150 10 ELWLKWDKDPETRKEIEELLASKDEEELKRRFLKRMEFGTAGLRGKMGAGFNCMNDLTVQQTAQGLCAYVIETFGQALKS 89 (584)
T ss_pred HHHHcCCCCHHHHHHHHHHHhCCCHHHHHHHhCCCCcccCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 56665 356777888888832 35789989999 88877666677888998888 6778788773 1
Q ss_pred CceeeecCCCCCCh----hhHHHHhhhcCCcEEEEecc
Q 001850 165 PKAGWQIDPFGHSA----VQAYLLGVELGFDSVHFARI 198 (1005)
Q Consensus 165 p~v~w~iD~FGhs~----~~p~ll~~~~G~~~~~~~Ri 198 (1005)
+.|.=.-|.=-+|. .++..|. .+|++-..+.++
T Consensus 90 ~~VvVg~D~R~~S~~fa~~~a~~L~-a~Gi~V~~~g~~ 126 (584)
T PTZ00150 90 RGVVIGYDGRYHSRRFAEITASVFL-SKGFKVYLFGQT 126 (584)
T ss_pred CcEEEEeCCCCCcHHHHHHHHHHHH-HCCCEEEEeCCC
Confidence 23444455544444 4556776 899999999753
Done!