Query 001851
Match_columns 1004
No_of_seqs 190 out of 1007
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2063 Vacuolar assembly/sort 100.0 7E-108 2E-112 964.0 61.7 847 2-998 1-875 (877)
2 KOG2114 Vacuolar assembly/sort 100.0 4.5E-48 9.7E-53 438.8 53.1 753 6-996 12-878 (933)
3 KOG2066 Vacuolar assembly/sort 100.0 6.5E-47 1.4E-51 427.3 52.3 707 18-989 41-821 (846)
4 PF00780 CNH: CNH domain; Int 100.0 4.2E-33 9E-38 306.6 28.6 241 21-283 2-274 (275)
5 KOG2034 Vacuolar sorting prote 100.0 2.7E-26 5.9E-31 264.7 28.5 537 237-989 288-849 (911)
6 smart00036 CNH Domain found in 99.9 1.4E-24 3.1E-29 239.4 26.8 245 27-292 14-301 (302)
7 PF10367 Vps39_2: Vacuolar sor 99.9 2.5E-23 5.4E-28 194.8 11.2 108 879-987 1-108 (109)
8 PF10366 Vps39_1: Vacuolar sor 99.8 3E-21 6.6E-26 176.8 9.3 107 507-617 1-108 (108)
9 COG5422 ROM1 RhoGEF, Guanine n 99.8 2.6E-19 5.7E-24 204.1 19.4 261 4-282 842-1143(1175)
10 smart00299 CLH Clathrin heavy 99.5 4.8E-14 1.1E-18 138.2 11.5 131 631-795 6-138 (140)
11 KOG4305 RhoGEF GTPase [Signal 99.4 1.2E-12 2.6E-17 157.4 16.0 206 75-282 752-997 (1029)
12 PF00637 Clathrin: Region in C 99.3 8.3E-14 1.8E-18 137.1 -5.2 132 631-796 6-139 (143)
13 cd00200 WD40 WD40 domain, foun 98.4 0.00032 7E-09 75.5 29.6 233 16-273 9-258 (289)
14 KOG0985 Vesicle coat protein c 98.4 0.00019 4.2E-09 85.5 27.5 388 295-923 1043-1463(1666)
15 KOG2066 Vacuolar assembly/sort 98.2 0.0021 4.6E-08 75.8 31.8 94 511-623 613-706 (846)
16 KOG0294 WD40 repeat-containing 98.1 0.0002 4.3E-09 75.5 18.4 166 16-185 43-238 (362)
17 cd00200 WD40 WD40 domain, foun 98.0 0.0019 4.1E-08 69.5 25.5 186 17-224 52-249 (289)
18 KOG0291 WD40-repeat-containing 97.9 0.0051 1.1E-07 72.0 26.4 221 16-263 307-550 (893)
19 KOG0576 Mitogen-activated prot 97.9 9.1E-05 2E-09 85.6 12.1 239 11-272 486-786 (829)
20 KOG0985 Vesicle coat protein c 97.8 0.0006 1.3E-08 81.5 17.7 233 507-795 874-1117(1666)
21 KOG1273 WD40 repeat protein [G 97.8 0.0023 4.9E-08 67.6 19.6 233 22-277 31-293 (405)
22 KOG2114 Vacuolar assembly/sort 97.6 0.00047 1E-08 81.5 13.1 114 632-768 397-516 (933)
23 KOG2048 WD40 repeat protein [G 97.5 0.029 6.3E-07 65.2 24.5 238 15-305 24-279 (691)
24 KOG0276 Vesicle coat complex C 97.5 0.041 9E-07 63.3 25.3 265 17-314 184-501 (794)
25 PF05131 Pep3_Vps18: Pep3/Vps1 97.5 0.0018 3.9E-08 63.2 12.9 106 238-352 35-147 (147)
26 KOG3621 WD40 repeat-containing 97.5 0.012 2.6E-07 68.8 21.2 280 17-320 36-372 (726)
27 KOG2079 Vacuolar assembly/sort 97.4 0.0015 3.3E-08 79.2 14.1 95 901-998 1078-1176(1206)
28 KOG1539 WD repeat protein [Gen 97.4 0.0043 9.2E-08 73.4 16.0 181 18-220 452-643 (910)
29 KOG1446 Histone H3 (Lys4) meth 97.2 0.2 4.4E-06 53.5 24.6 205 5-214 3-250 (311)
30 TIGR03866 PQQ_ABC_repeats PQQ- 97.1 0.57 1.2E-05 51.2 29.4 246 28-301 3-279 (300)
31 KOG0289 mRNA splicing factor [ 97.1 0.0096 2.1E-07 65.6 14.2 130 18-167 349-485 (506)
32 KOG0976 Rho/Rac1-interacting s 97.0 0.00063 1.4E-08 79.0 5.0 115 148-263 1073-1193(1265)
33 KOG0587 Traf2- and Nck-interac 96.9 0.00031 6.6E-09 83.9 1.5 230 13-263 637-901 (953)
34 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.69 1.5E-05 50.6 27.7 233 19-275 33-290 (300)
35 KOG0310 Conserved WD40 repeat- 96.8 0.035 7.6E-07 62.3 15.7 144 17-182 154-306 (487)
36 PF00637 Clathrin: Region in C 96.8 0.00051 1.1E-08 67.3 1.4 99 505-621 42-140 (143)
37 PF10282 Lactonase: Lactonase, 96.8 0.46 1E-05 54.0 25.6 240 25-279 47-342 (345)
38 smart00299 CLH Clathrin heavy 96.8 0.0099 2.2E-07 58.0 10.3 94 506-617 42-136 (140)
39 KOG0299 U3 snoRNP-associated p 96.7 0.16 3.4E-06 56.9 20.1 254 17-277 143-427 (479)
40 KOG1036 Mitotic spindle checkp 96.6 0.043 9.3E-07 58.3 14.4 148 17-192 55-206 (323)
41 KOG1274 WD40 repeat protein [G 96.6 0.23 5.1E-06 60.0 21.9 180 15-213 55-249 (933)
42 PF14761 HPS3_N: Hermansky-Pud 96.6 0.062 1.3E-06 55.1 15.0 162 3-183 5-213 (215)
43 PRK11028 6-phosphogluconolacto 96.6 0.7 1.5E-05 52.1 25.1 228 18-262 36-303 (330)
44 KOG0318 WD40 repeat stress pro 96.5 0.31 6.7E-06 55.4 20.6 176 16-214 363-547 (603)
45 PF11768 DUF3312: Protein of u 96.4 2.8 6.1E-05 49.0 31.5 74 137-213 238-316 (545)
46 KOG1274 WD40 repeat protein [G 96.4 0.073 1.6E-06 64.1 16.0 160 6-185 86-263 (933)
47 KOG0291 WD40-repeat-containing 96.4 1.5 3.3E-05 52.2 25.9 112 74-185 54-176 (893)
48 COG2706 3-carboxymuconate cycl 96.4 1.5 3.4E-05 48.0 24.5 229 17-263 40-321 (346)
49 PTZ00420 coronin; Provisional 96.3 1.5 3.3E-05 52.8 26.7 114 74-190 73-203 (568)
50 PTZ00420 coronin; Provisional 96.3 0.89 1.9E-05 54.7 24.5 157 15-185 73-249 (568)
51 KOG2079 Vacuolar assembly/sort 96.2 5.1 0.00011 50.0 31.3 238 506-757 542-829 (1206)
52 KOG0279 G protein beta subunit 96.1 2.1 4.4E-05 45.4 22.8 247 10-275 9-273 (315)
53 KOG0646 WD40 repeat protein [G 96.0 0.1 2.2E-06 58.4 13.7 150 14-185 79-248 (476)
54 KOG0279 G protein beta subunit 95.8 1.6 3.5E-05 46.2 20.2 151 17-190 106-268 (315)
55 KOG2055 WD40 repeat protein [G 95.8 0.024 5.1E-07 63.1 7.3 112 19-143 392-512 (514)
56 KOG1407 WD40 repeat protein [F 95.7 1.2 2.7E-05 46.6 19.1 239 17-278 21-275 (313)
57 PLN00181 protein SPA1-RELATED; 95.7 3.4 7.4E-05 52.7 28.1 149 17-186 533-692 (793)
58 KOG2445 Nuclear pore complex c 95.7 0.38 8.3E-06 51.3 15.5 150 26-185 73-257 (361)
59 KOG0275 Conserved WD40 repeat- 95.7 0.21 4.6E-06 53.1 13.6 200 16-229 213-428 (508)
60 PTZ00421 coronin; Provisional 95.7 1.1 2.3E-05 53.4 21.4 160 12-186 71-247 (493)
61 KOG2315 Predicted translation 95.4 1.3 2.7E-05 51.2 19.6 198 97-302 148-393 (566)
62 PLN00181 protein SPA1-RELATED; 95.3 5.7 0.00012 50.7 28.0 231 16-263 483-738 (793)
63 PTZ00421 coronin; Provisional 95.2 3.6 7.8E-05 49.0 23.6 156 16-190 125-296 (493)
64 KOG0646 WD40 repeat protein [G 95.0 0.57 1.2E-05 52.6 14.9 166 18-193 125-316 (476)
65 KOG4378 Nuclear protein COP1 [ 94.9 0.66 1.4E-05 52.4 15.1 150 16-186 121-282 (673)
66 KOG2055 WD40 repeat protein [G 94.9 0.92 2E-05 51.0 16.2 155 17-192 214-382 (514)
67 KOG0772 Uncharacterized conser 94.8 0.32 7E-06 55.1 12.5 142 26-184 329-488 (641)
68 KOG0273 Beta-transducin family 94.8 6 0.00013 44.9 22.1 257 17-299 236-521 (524)
69 TIGR02658 TTQ_MADH_Hv methylam 94.8 4.5 9.7E-05 45.7 21.8 160 97-263 29-223 (352)
70 KOG0315 G-protein beta subunit 94.8 2.7 5.8E-05 43.9 17.9 153 16-190 124-294 (311)
71 KOG0976 Rho/Rac1-interacting s 94.8 0.071 1.5E-06 62.8 7.5 148 111-263 941-1108(1265)
72 KOG1273 WD40 repeat protein [G 94.7 4.3 9.3E-05 43.8 19.8 104 79-185 27-138 (405)
73 KOG0285 Pleiotropic regulator 94.6 6.6 0.00014 43.1 21.0 186 3-212 138-334 (460)
74 KOG1036 Mitotic spindle checkp 94.6 0.94 2E-05 48.5 14.6 146 18-186 15-165 (323)
75 KOG0266 WD40 repeat-containing 94.6 8.3 0.00018 45.7 24.8 235 16-275 159-420 (456)
76 KOG1539 WD repeat protein [Gen 94.5 3.1 6.7E-05 50.3 20.0 191 13-228 73-279 (910)
77 COG2706 3-carboxymuconate cycl 94.5 8.1 0.00018 42.6 21.7 205 96-300 17-273 (346)
78 KOG2048 WD40 repeat protein [G 94.4 3.4 7.3E-05 48.8 19.8 191 16-228 291-509 (691)
79 PRK11028 6-phosphogluconolacto 94.4 10 0.00022 42.6 24.2 177 97-273 14-218 (330)
80 PLN03218 maturation of RBCL 1; 94.4 21 0.00046 46.7 29.3 59 303-364 373-431 (1060)
81 KOG0278 Serine/threonine kinas 94.3 0.62 1.3E-05 48.3 12.2 163 26-210 112-281 (334)
82 KOG0266 WD40 repeat-containing 94.3 4.3 9.4E-05 48.0 21.5 189 17-224 204-409 (456)
83 KOG1524 WD40 repeat-containing 94.2 2 4.3E-05 49.3 16.9 253 27-306 76-353 (737)
84 KOG0772 Uncharacterized conser 94.2 3 6.6E-05 47.7 18.1 261 22-299 175-485 (641)
85 KOG1445 Tumor-specific antigen 94.2 0.37 7.9E-06 55.8 11.2 106 27-144 641-751 (1012)
86 KOG0319 WD40-repeat-containing 94.2 1.1 2.5E-05 53.1 15.5 157 12-189 143-359 (775)
87 KOG0647 mRNA export protein (c 94.2 5.8 0.00012 42.7 19.1 192 75-275 27-239 (347)
88 KOG0294 WD40 repeat-containing 94.1 4.5 9.8E-05 43.7 18.4 178 75-263 83-281 (362)
89 KOG0292 Vesicle coat complex C 94.1 18 0.0004 44.4 25.2 246 17-283 207-498 (1202)
90 KOG1523 Actin-related protein 94.1 7.4 0.00016 42.2 19.9 144 14-173 8-162 (361)
91 KOG2110 Uncharacterized conser 94.0 1.9 4.1E-05 47.4 15.6 153 15-186 86-250 (391)
92 PF03178 CPSF_A: CPSF A subuni 93.6 1.3 2.8E-05 49.8 14.6 143 17-176 24-193 (321)
93 PF10366 Vps39_1: Vacuolar sor 93.5 0.15 3.1E-06 47.2 5.6 54 703-757 14-67 (108)
94 KOG0274 Cdc4 and related F-box 93.3 1.4 3E-05 52.9 14.7 149 15-189 330-487 (537)
95 KOG0647 mRNA export protein (c 93.2 2.6 5.6E-05 45.2 14.6 150 14-186 70-230 (347)
96 PF10282 Lactonase: Lactonase, 93.0 19 0.00042 40.8 27.4 246 28-291 1-310 (345)
97 KOG0296 Angio-associated migra 92.8 8.3 0.00018 42.5 18.0 150 18-189 150-361 (399)
98 TIGR03300 assembly_YfgL outer 92.6 23 0.0005 40.6 26.8 124 165-298 239-376 (377)
99 KOG0306 WD40-repeat-containing 92.6 4 8.7E-05 48.8 16.4 148 15-183 64-218 (888)
100 KOG2106 Uncharacterized conser 92.5 24 0.00053 40.6 24.2 219 26-272 212-444 (626)
101 KOG0640 mRNA cleavage stimulat 92.4 3.9 8.5E-05 43.9 14.7 112 17-146 217-338 (430)
102 KOG0316 Conserved WD40 repeat- 92.4 16 0.00034 38.1 23.8 263 13-302 14-300 (307)
103 PF04053 Coatomer_WDAD: Coatom 92.4 28 0.0006 40.9 23.6 263 75-361 32-317 (443)
104 KOG0315 G-protein beta subunit 92.3 7.7 0.00017 40.6 16.2 222 17-262 41-287 (311)
105 KOG0316 Conserved WD40 repeat- 92.2 3.5 7.6E-05 42.7 13.6 82 4-106 133-216 (307)
106 KOG0318 WD40 repeat stress pro 92.2 27 0.00059 40.5 28.0 222 18-263 283-517 (603)
107 KOG0310 Conserved WD40 repeat- 92.1 14 0.0003 42.2 19.4 155 12-187 64-228 (487)
108 PF14727 PHTB1_N: PTHB1 N-term 92.1 13 0.00028 43.1 19.9 132 27-175 38-194 (418)
109 KOG0288 WD40 repeat protein Ti 92.0 5.1 0.00011 44.8 15.4 153 16-193 219-380 (459)
110 PF04053 Coatomer_WDAD: Coatom 92.0 7.3 0.00016 45.6 18.1 131 78-227 111-256 (443)
111 KOG0306 WD40-repeat-containing 91.8 5.7 0.00012 47.6 16.5 153 21-194 419-591 (888)
112 KOG0275 Conserved WD40 repeat- 91.8 1.9 4.2E-05 46.1 11.6 178 17-216 264-457 (508)
113 KOG0307 Vesicle coat complex C 91.7 0.76 1.7E-05 57.1 9.8 211 29-264 83-328 (1049)
114 KOG2111 Uncharacterized conser 91.7 13 0.00029 40.3 17.7 137 27-187 18-170 (346)
115 KOG0319 WD40-repeat-containing 91.5 30 0.00065 41.7 21.9 231 16-271 107-360 (775)
116 PF09943 DUF2175: Uncharacteri 91.5 0.047 1E-06 48.6 -0.4 35 957-993 3-38 (101)
117 KOG0282 mRNA splicing factor [ 91.4 1.2 2.6E-05 50.4 10.2 236 18-275 216-473 (503)
118 PF13432 TPR_16: Tetratricopep 91.4 0.62 1.3E-05 38.3 6.3 55 306-365 3-57 (65)
119 KOG2110 Uncharacterized conser 91.2 18 0.0004 40.0 18.4 139 120-263 91-248 (391)
120 KOG0263 Transcription initiati 91.0 1.4 3.1E-05 52.6 10.9 108 17-143 536-649 (707)
121 PF08596 Lgl_C: Lethal giant l 90.7 1.6 3.4E-05 50.4 10.9 142 28-186 157-337 (395)
122 KOG0273 Beta-transducin family 90.6 7.8 0.00017 44.0 15.4 147 16-184 359-523 (524)
123 KOG0305 Anaphase promoting com 90.6 7.5 0.00016 45.5 16.1 188 16-225 260-462 (484)
124 PRK11447 cellulose synthase su 90.6 41 0.00089 45.0 25.5 52 309-365 278-329 (1157)
125 PF02239 Cytochrom_D1: Cytochr 90.4 15 0.00033 42.1 18.5 183 88-274 6-212 (369)
126 KOG0288 WD40 repeat protein Ti 90.2 4.5 9.7E-05 45.2 13.0 139 21-179 307-455 (459)
127 KOG2321 WD40 repeat protein [G 90.2 1.4 2.9E-05 51.0 9.3 96 18-132 230-331 (703)
128 COG4847 Uncharacterized protei 90.2 0.057 1.2E-06 46.6 -1.1 37 956-994 6-43 (103)
129 KOG0293 WD40 repeat-containing 90.2 4.2 9.1E-05 45.3 12.6 158 17-193 313-479 (519)
130 KOG0305 Anaphase promoting com 90.2 8.4 0.00018 45.1 16.0 174 16-213 217-405 (484)
131 KOG1188 WD40 repeat protein [G 90.1 2.8 6.1E-05 45.6 11.1 140 26-186 40-198 (376)
132 KOG2321 WD40 repeat protein [G 90.1 16 0.00035 42.7 17.5 180 77-263 53-258 (703)
133 KOG0649 WD40 repeat protein [G 90.0 5.2 0.00011 41.6 12.4 136 18-175 116-264 (325)
134 KOG0639 Transducin-like enhanc 90.0 3.5 7.5E-05 47.0 12.1 146 26-191 477-629 (705)
135 PF03178 CPSF_A: CPSF A subuni 90.0 5.7 0.00012 44.6 14.6 87 97-185 64-158 (321)
136 KOG0650 WD40 repeat nucleolar 89.9 14 0.00031 43.2 17.1 68 73-140 398-469 (733)
137 KOG0284 Polyadenylation factor 89.9 5.6 0.00012 44.4 13.4 165 6-194 128-302 (464)
138 KOG0292 Vesicle coat complex C 89.6 62 0.0014 40.1 26.4 170 18-188 137-352 (1202)
139 KOG1645 RING-finger-containing 89.5 8.1 0.00018 43.1 14.2 21 27-47 249-269 (463)
140 PF13639 zf-RING_2: Ring finge 89.2 0.18 3.9E-06 38.2 1.1 30 958-988 2-32 (44)
141 KOG0283 WD40 repeat-containing 89.1 5.9 0.00013 48.0 13.9 96 87-185 380-482 (712)
142 PF14783 BBS2_Mid: Ciliary BBS 88.6 12 0.00027 34.5 12.6 62 19-102 2-70 (111)
143 KOG2139 WD40 repeat protein [G 88.3 46 0.001 36.9 18.6 164 13-185 137-310 (445)
144 KOG0642 Cell-cycle nuclear pro 88.2 9.7 0.00021 44.3 14.2 221 27-262 307-560 (577)
145 KOG4378 Nuclear protein COP1 [ 88.1 5.7 0.00012 45.3 12.1 121 28-168 179-304 (673)
146 KOG0289 mRNA splicing factor [ 87.9 40 0.00086 38.3 18.2 154 18-191 305-469 (506)
147 PF14559 TPR_19: Tetratricopep 87.8 0.53 1.2E-05 39.0 3.2 51 310-365 1-51 (68)
148 KOG0270 WD40 repeat-containing 87.7 4.3 9.3E-05 45.7 10.8 108 17-143 330-449 (463)
149 PRK11138 outer membrane biogen 87.4 62 0.0014 37.3 27.0 127 165-300 254-393 (394)
150 KOG1240 Protein kinase contain 87.2 18 0.0004 46.0 16.7 161 16-192 1098-1281(1431)
151 PF12341 DUF3639: Protein of u 87.1 1.1 2.4E-05 29.9 3.6 26 17-42 2-27 (27)
152 KOG1446 Histone H3 (Lys4) meth 87.0 25 0.00053 38.2 15.6 148 13-175 139-293 (311)
153 PLN03081 pentatricopeptide (PP 87.0 94 0.002 39.0 27.8 60 507-576 261-320 (697)
154 PF14446 Prok-RING_1: Prokaryo 86.8 0.33 7.1E-06 38.1 1.2 39 955-995 4-44 (54)
155 PF12678 zf-rbx1: RING-H2 zinc 86.6 0.43 9.3E-06 40.7 2.0 39 956-995 19-71 (73)
156 KOG0643 Translation initiation 86.5 27 0.00059 37.1 15.1 97 74-174 9-111 (327)
157 KOG0650 WD40 repeat nucleolar 86.4 3.8 8.2E-05 47.8 9.7 110 74-186 520-639 (733)
158 KOG0771 Prolactin regulatory e 86.1 9.4 0.0002 42.8 12.4 154 18-192 148-319 (398)
159 KOG0278 Serine/threonine kinas 86.1 18 0.00039 38.0 13.4 131 15-168 142-278 (334)
160 PF14763 HPS3_C: Hermansky-Pud 86.1 7.7 0.00017 42.0 11.2 67 701-770 206-277 (353)
161 PF02239 Cytochrom_D1: Cytochr 86.1 29 0.00062 39.8 17.1 253 26-302 48-348 (369)
162 KOG2111 Uncharacterized conser 85.9 31 0.00068 37.6 15.6 151 15-185 93-257 (346)
163 KOG2041 WD40 repeat protein [G 85.7 67 0.0014 38.8 19.2 158 17-184 15-186 (1189)
164 PF08662 eIF2A: Eukaryotic tra 85.5 39 0.00085 34.8 16.3 104 75-184 59-179 (194)
165 KOG0299 U3 snoRNP-associated p 85.4 7.7 0.00017 44.0 11.3 115 13-142 324-453 (479)
166 COG5243 HRD1 HRD ubiquitin lig 85.3 0.86 1.9E-05 49.6 3.8 94 896-999 233-343 (491)
167 KOG0276 Vesicle coat complex C 85.3 90 0.002 37.2 21.6 111 15-144 12-128 (794)
168 KOG2076 RNA polymerase III tra 85.2 20 0.00043 44.4 15.4 143 535-680 154-329 (895)
169 PRK11447 cellulose synthase su 85.0 1.1E+02 0.0024 40.9 24.3 54 307-365 358-411 (1157)
170 KOG0293 WD40 repeat-containing 84.4 35 0.00076 38.4 15.5 143 26-186 236-386 (519)
171 PF12894 Apc4_WD40: Anaphase-p 84.3 2.5 5.5E-05 32.5 5.0 32 14-45 9-42 (47)
172 KOG0285 Pleiotropic regulator 84.2 8.8 0.00019 42.1 10.7 124 16-159 277-405 (460)
173 KOG1407 WD40 repeat protein [F 84.0 29 0.00062 36.8 13.9 139 26-188 118-265 (313)
174 PF13512 TPR_18: Tetratricopep 84.0 3.2 6.9E-05 40.2 6.7 68 303-379 13-80 (142)
175 KOG2445 Nuclear pore complex c 83.9 41 0.00089 36.5 15.3 157 5-176 2-193 (361)
176 KOG1587 Cytoplasmic dynein int 83.2 18 0.00039 43.4 14.0 157 17-185 348-517 (555)
177 PF12895 Apc3: Anaphase-promot 83.2 2.5 5.5E-05 36.8 5.4 50 309-364 34-83 (84)
178 KOG0649 WD40 repeat protein [G 83.1 65 0.0014 33.9 22.1 225 21-262 17-273 (325)
179 KOG0269 WD40 repeat-containing 83.1 11 0.00023 45.6 11.7 132 16-167 133-273 (839)
180 KOG1734 Predicted RING-contain 82.2 0.34 7.3E-06 50.5 -0.7 33 954-987 222-262 (328)
181 KOG1920 IkappaB kinase complex 82.2 22 0.00049 45.3 14.5 193 537-768 778-991 (1265)
182 KOG0282 mRNA splicing factor [ 81.6 12 0.00026 42.7 11.0 155 18-193 301-471 (503)
183 KOG1272 WD40-repeat-containing 81.5 4.2 9.2E-05 46.0 7.3 140 19-179 256-403 (545)
184 KOG2106 Uncharacterized conser 81.2 58 0.0013 37.7 16.0 69 114-183 447-518 (626)
185 smart00504 Ubox Modified RING 81.2 0.71 1.5E-05 37.9 1.0 39 957-998 2-43 (63)
186 KOG2139 WD40 repeat protein [G 81.2 45 0.00097 37.1 14.6 125 96-220 121-262 (445)
187 PF13923 zf-C3HC4_2: Zinc fing 81.0 0.96 2.1E-05 33.2 1.6 28 959-988 1-28 (39)
188 PF08662 eIF2A: Eukaryotic tra 80.9 41 0.00088 34.7 14.2 91 116-213 61-160 (194)
189 KOG0284 Polyadenylation factor 80.3 10 0.00022 42.4 9.6 140 16-177 222-372 (464)
190 PF13525 YfiO: Outer membrane 80.1 4.6 0.0001 42.0 7.0 66 305-379 10-75 (203)
191 KOG0826 Predicted E3 ubiquitin 80.1 0.61 1.3E-05 50.2 0.3 42 956-999 300-344 (357)
192 KOG1332 Vesicle coat complex C 79.9 23 0.0005 37.2 11.4 129 22-166 19-158 (299)
193 KOG2096 WD40 repeat protein [G 79.7 67 0.0014 35.1 15.0 151 74-226 85-264 (420)
194 KOG2096 WD40 repeat protein [G 79.4 85 0.0018 34.4 15.7 145 82-227 235-406 (420)
195 KOG1408 WD40 repeat protein [F 79.0 64 0.0014 39.0 15.8 190 17-226 460-674 (1080)
196 KOG1900 Nuclear pore complex, 78.8 4.5 9.8E-05 51.6 7.2 87 15-104 177-273 (1311)
197 KOG0283 WD40 repeat-containing 78.4 16 0.00035 44.4 11.4 79 18-108 453-537 (712)
198 KOG0643 Translation initiation 78.4 1E+02 0.0022 33.1 16.5 155 17-192 53-228 (327)
199 PF13414 TPR_11: TPR repeat; P 78.4 3.3 7.1E-05 34.3 4.3 56 305-365 8-64 (69)
200 PF07719 TPR_2: Tetratricopept 78.3 5 0.00011 27.8 4.6 25 341-365 3-27 (34)
201 KOG0268 Sof1-like rRNA process 77.8 60 0.0013 36.1 14.2 102 78-182 150-255 (433)
202 PRK10747 putative protoheme IX 77.7 22 0.00047 41.3 12.2 172 549-752 190-385 (398)
203 PF13360 PQQ_2: PQQ-like domai 77.6 96 0.0021 32.4 20.3 169 127-302 37-231 (238)
204 PF14762 HPS3_Mid: Hermansky-P 77.5 37 0.00079 38.5 13.1 166 211-376 96-322 (374)
205 KOG4497 Uncharacterized conser 76.7 25 0.00055 38.3 11.0 107 75-184 318-431 (447)
206 KOG0973 Histone transcription 76.3 29 0.00063 43.6 12.9 135 16-154 69-209 (942)
207 PF13570 PQQ_3: PQQ-like domai 76.0 3.6 7.8E-05 30.2 3.4 24 21-44 16-39 (40)
208 PF13360 PQQ_2: PQQ-like domai 75.8 1.1E+02 0.0023 32.1 19.2 141 23-189 33-196 (238)
209 PF12234 Rav1p_C: RAVE protein 75.6 41 0.00089 41.0 13.8 81 703-795 435-523 (631)
210 PRK10866 outer membrane biogen 75.5 7.4 0.00016 41.8 7.0 66 305-379 37-102 (243)
211 TIGR02795 tol_pal_ybgF tol-pal 75.1 8.9 0.00019 35.2 6.8 60 304-365 6-65 (119)
212 PRK10803 tol-pal system protei 75.1 7.6 0.00017 42.1 7.0 65 306-379 148-213 (263)
213 KOG1920 IkappaB kinase complex 75.1 1.1E+02 0.0024 39.5 17.4 183 17-226 69-276 (1265)
214 smart00132 LIM Zinc-binding do 75.0 2.1 4.6E-05 30.9 1.9 30 958-988 1-30 (39)
215 PF04841 Vps16_N: Vps16, N-ter 74.0 1.8E+02 0.0039 33.8 26.5 83 237-324 260-343 (410)
216 PRK11788 tetratricopeptide rep 74.0 90 0.0019 35.6 16.2 56 305-365 112-167 (389)
217 PF14634 zf-RING_5: zinc-RING 73.4 0.76 1.6E-05 34.8 -0.9 32 958-990 1-33 (44)
218 KOG1034 Transcriptional repres 73.4 4.1 8.9E-05 44.2 4.2 61 21-96 314-374 (385)
219 PF12895 Apc3: Anaphase-promot 73.2 3.4 7.4E-05 35.9 3.1 57 312-371 1-57 (84)
220 KOG1188 WD40 repeat protein [G 72.9 44 0.00096 36.8 11.7 147 25-187 83-245 (376)
221 KOG3881 Uncharacterized conser 72.8 13 0.00027 41.5 7.8 88 17-122 248-339 (412)
222 KOG2879 Predicted E3 ubiquitin 72.7 2 4.3E-05 45.3 1.7 44 952-997 235-283 (298)
223 PLN03081 pentatricopeptide (PP 72.5 63 0.0014 40.5 15.4 60 507-576 362-421 (697)
224 PF13920 zf-C3HC4_3: Zinc fing 72.2 1.6 3.4E-05 34.1 0.6 38 955-995 1-42 (50)
225 KOG0271 Notchless-like WD40 re 72.1 1.5E+02 0.0032 33.4 15.5 166 16-190 247-445 (480)
226 PF13371 TPR_9: Tetratricopept 71.9 6.3 0.00014 33.0 4.4 52 309-365 4-55 (73)
227 KOG4283 Transcription-coupled 71.8 58 0.0013 35.2 12.0 152 17-215 44-207 (397)
228 PF00130 C1_1: Phorbol esters/ 71.8 5.2 0.00011 31.5 3.6 42 952-994 7-51 (53)
229 KOG0296 Angio-associated migra 71.6 1.8E+02 0.0038 32.6 23.9 235 17-273 107-365 (399)
230 KOG0274 Cdc4 and related F-box 71.6 2.4E+02 0.0052 34.1 25.7 263 16-303 208-486 (537)
231 KOG0553 TPR repeat-containing 71.5 8.5 0.00018 41.7 6.1 59 306-369 121-180 (304)
232 PF09976 TPR_21: Tetratricopep 71.4 9.6 0.00021 37.1 6.2 55 308-364 56-110 (145)
233 PF04762 IKI3: IKI3 family; I 71.2 3.2E+02 0.007 35.5 24.3 233 17-277 76-348 (928)
234 KOG4328 WD40 protein [Function 71.2 72 0.0016 36.6 13.2 150 27-194 292-461 (498)
235 KOG0264 Nucleosome remodeling 71.0 82 0.0018 35.9 13.7 145 27-185 191-348 (422)
236 KOG1517 Guanine nucleotide bin 70.9 40 0.00086 42.5 12.0 134 26-175 1221-1371(1387)
237 KOG1963 WD40 repeat protein [G 70.9 32 0.0007 42.2 11.3 99 26-144 263-376 (792)
238 cd00162 RING RING-finger (Real 70.8 1.4 3E-05 32.8 0.0 30 958-989 1-30 (45)
239 KOG1897 Damage-specific DNA bi 70.6 42 0.00091 42.1 12.2 143 15-173 582-730 (1096)
240 KOG0307 Vesicle coat complex C 70.4 45 0.00098 42.3 12.6 157 16-194 116-294 (1049)
241 PF00400 WD40: WD domain, G-be 69.8 11 0.00025 26.9 4.8 32 11-42 6-39 (39)
242 KOG0272 U4/U6 small nuclear ri 69.8 1.2E+02 0.0025 34.6 14.3 192 16-228 217-423 (459)
243 PF13424 TPR_12: Tetratricopep 69.4 5.9 0.00013 33.7 3.8 57 309-365 14-72 (78)
244 KOG2063 Vacuolar assembly/sort 69.3 13 0.00029 46.6 8.0 54 703-757 478-532 (877)
245 PF08553 VID27: VID27 cytoplas 69.2 94 0.002 39.1 15.1 93 87-184 543-647 (794)
246 KOG3617 WD40 and TPR repeat-co 68.9 77 0.0017 39.1 13.5 69 311-379 811-898 (1416)
247 KOG2034 Vacuolar sorting prote 67.9 7.9 0.00017 47.6 5.4 186 550-766 362-567 (911)
248 KOG1240 Protein kinase contain 67.9 52 0.0011 42.3 12.3 149 25-186 1060-1227(1431)
249 PF00097 zf-C3HC4: Zinc finger 67.5 3.5 7.7E-05 30.4 1.7 29 959-989 1-29 (41)
250 KOG0302 Ribosome Assembly prot 67.5 18 0.00039 40.2 7.5 72 16-103 302-378 (440)
251 KOG0771 Prolactin regulatory e 66.9 14 0.00031 41.4 6.8 68 17-102 282-353 (398)
252 PF13174 TPR_6: Tetratricopept 66.6 9 0.00019 26.2 3.6 28 344-378 5-32 (33)
253 KOG0263 Transcription initiati 66.1 2.5E+02 0.0054 34.5 17.1 142 26-189 463-612 (707)
254 PF11768 DUF3312: Protein of u 66.0 20 0.00043 42.3 8.0 30 16-45 259-290 (545)
255 KOG0640 mRNA cleavage stimulat 65.6 41 0.00089 36.5 9.5 116 9-143 162-291 (430)
256 TIGR02658 TTQ_MADH_Hv methylam 65.3 2.5E+02 0.0054 31.9 26.0 192 79-276 108-343 (352)
257 PHA02929 N1R/p28-like protein; 65.0 2.2 4.7E-05 45.2 0.1 44 954-998 172-224 (238)
258 KOG1524 WD40 repeat-containing 64.8 2.9E+02 0.0063 32.6 18.6 208 27-263 117-348 (737)
259 COG4105 ComL DNA uptake lipopr 64.7 18 0.00039 38.5 6.7 69 302-379 36-104 (254)
260 KOG0322 G-protein beta subunit 64.3 34 0.00075 36.3 8.5 67 76-142 252-322 (323)
261 PF00515 TPR_1: Tetratricopept 64.2 5.9 0.00013 27.6 2.2 25 341-365 3-27 (34)
262 KOG0286 G-protein beta subunit 63.7 2.3E+02 0.0049 30.9 18.2 152 19-189 148-308 (343)
263 PLN03077 Protein ECB2; Provisi 63.4 4.3E+02 0.0093 34.1 21.0 25 549-573 326-350 (857)
264 KOG1840 Kinesin light chain [C 63.4 79 0.0017 37.7 12.5 56 310-365 335-393 (508)
265 KOG0303 Actin-binding protein 62.8 64 0.0014 36.3 10.6 114 74-190 80-209 (472)
266 KOG0270 WD40 repeat-containing 62.3 64 0.0014 36.7 10.7 155 26-186 192-362 (463)
267 KOG2695 WD40 repeat protein [G 62.1 25 0.00054 38.7 7.3 115 26-158 264-388 (425)
268 KOG0882 Cyclophilin-related pe 61.7 1.4E+02 0.003 34.4 13.0 164 13-193 95-314 (558)
269 PLN03077 Protein ECB2; Provisi 61.6 4.6E+02 0.0099 33.8 29.3 54 303-364 225-278 (857)
270 smart00184 RING Ring finger. E 61.3 1.9 4E-05 30.8 -0.9 27 959-988 1-27 (39)
271 PF12861 zf-Apc11: Anaphase-pr 61.3 2.8 6.1E-05 36.5 0.1 44 954-998 19-79 (85)
272 PF00412 LIM: LIM domain; Int 61.2 6.7 0.00015 31.3 2.3 28 959-987 1-28 (58)
273 PF03107 C1_2: C1 domain; Int 61.1 9.6 0.00021 26.2 2.7 28 958-986 2-30 (30)
274 PLN03218 maturation of RBCL 1; 60.9 4.4E+02 0.0096 34.8 19.8 23 730-752 721-743 (1060)
275 KOG1897 Damage-specific DNA bi 60.7 3.2E+02 0.0069 34.8 16.9 159 20-195 310-488 (1096)
276 KOG1832 HIV-1 Vpr-binding prot 60.7 13 0.00027 45.6 5.2 106 17-144 1102-1215(1516)
277 KOG1840 Kinesin light chain [C 60.3 2.3E+02 0.0051 33.8 15.6 59 307-365 206-267 (508)
278 PF13176 TPR_7: Tetratricopept 60.3 12 0.00027 26.7 3.3 24 549-572 2-25 (36)
279 COG3063 PilF Tfp pilus assembl 59.8 8.3 0.00018 40.2 3.2 28 339-366 103-130 (250)
280 KOG0281 Beta-TrCP (transducin 58.9 83 0.0018 34.7 10.4 158 9-192 230-396 (499)
281 KOG0295 WD40 repeat-containing 58.9 3E+02 0.0066 30.9 15.1 198 74-273 107-331 (406)
282 PF07569 Hira: TUP1-like enhan 58.6 33 0.00072 36.1 7.6 31 16-46 12-42 (219)
283 KOG0271 Notchless-like WD40 re 58.2 1.6E+02 0.0035 33.1 12.6 128 27-176 337-472 (480)
284 KOG4640 Anaphase-promoting com 58.2 31 0.00067 41.0 7.7 71 116-190 22-98 (665)
285 PRK10049 pgaA outer membrane p 57.4 5.1E+02 0.011 33.0 26.7 58 303-365 18-75 (765)
286 PF10886 DUF2685: Protein of u 57.1 7 0.00015 30.7 1.6 29 957-987 2-31 (54)
287 smart00564 PQQ beta-propeller 57.0 18 0.0004 24.9 3.7 22 24-45 4-25 (33)
288 TIGR02917 PEP_TPR_lipo putativ 56.8 5.1E+02 0.011 32.8 28.1 26 549-574 570-595 (899)
289 PF14561 TPR_20: Tetratricopep 56.7 35 0.00076 30.4 6.3 62 549-617 25-86 (90)
290 PF01535 PPR: PPR repeat; Int 56.0 17 0.00036 24.3 3.4 26 549-574 3-28 (31)
291 KOG0973 Histone transcription 55.7 2.7E+02 0.0059 35.4 15.5 138 6-165 119-272 (942)
292 PF07649 C1_3: C1-like domain; 55.4 4.7 0.0001 27.7 0.4 28 958-986 2-30 (30)
293 KOG0645 WD40 repeat protein [G 54.4 3.1E+02 0.0067 29.6 17.8 153 6-175 50-215 (312)
294 TIGR03302 OM_YfiO outer membra 54.4 35 0.00075 36.0 7.2 67 304-379 37-103 (235)
295 KOG0277 Peroxisomal targeting 54.1 2.8E+02 0.0061 29.6 13.0 140 26-186 73-223 (311)
296 KOG0269 WD40 repeat-containing 53.1 81 0.0018 38.5 10.1 122 26-167 189-319 (839)
297 PF13414 TPR_11: TPR repeat; P 53.0 8.7 0.00019 31.7 1.8 33 341-373 5-38 (69)
298 KOG2041 WD40 repeat protein [G 52.9 5.2E+02 0.011 31.7 25.2 33 294-327 658-690 (1189)
299 PF09976 TPR_21: Tetratricopep 52.7 31 0.00066 33.5 5.9 59 305-365 16-74 (145)
300 KOG0645 WD40 repeat protein [G 52.6 3.3E+02 0.0072 29.4 17.5 157 13-184 11-180 (312)
301 PF13181 TPR_8: Tetratricopept 52.5 22 0.00047 24.5 3.5 25 341-365 3-27 (34)
302 KOG2394 WD40 protein DMR-N9 [G 52.4 1.7E+02 0.0037 34.4 12.1 128 16-143 219-362 (636)
303 PF14781 BBS2_N: Ciliary BBSom 52.1 2.3E+02 0.0049 27.3 11.6 111 27-149 11-131 (136)
304 PF10395 Utp8: Utp8 family; I 51.5 3E+02 0.0064 33.9 14.6 155 16-186 129-307 (670)
305 PF13429 TPR_15: Tetratricopep 51.4 28 0.00061 37.9 6.0 52 702-753 182-239 (280)
306 cd00189 TPR Tetratricopeptide 51.3 25 0.00053 29.5 4.6 56 305-365 5-60 (100)
307 KOG2919 Guanine nucleotide-bin 51.3 2.1E+02 0.0045 31.6 11.9 154 22-190 166-334 (406)
308 PLN03208 E3 ubiquitin-protein 51.2 6.9 0.00015 39.8 1.0 36 950-988 12-47 (193)
309 KOG0268 Sof1-like rRNA process 51.0 1E+02 0.0022 34.4 9.6 116 77-196 189-314 (433)
310 KOG0313 Microtubule binding pr 50.8 1.3E+02 0.0029 33.7 10.6 110 17-143 301-418 (423)
311 PRK15359 type III secretion sy 50.7 17 0.00037 35.4 3.7 58 303-365 27-84 (144)
312 PF12569 NARP1: NMDA receptor- 50.3 5.3E+02 0.011 31.1 23.0 63 305-379 9-71 (517)
313 KOG3616 Selective LIM binding 50.2 5.7E+02 0.012 31.5 20.8 42 532-573 777-818 (1636)
314 KOG1912 WD40 repeat protein [G 49.6 3E+02 0.0065 34.0 13.9 168 27-213 80-291 (1062)
315 PF13428 TPR_14: Tetratricopep 49.5 36 0.00078 25.4 4.5 32 341-379 3-34 (44)
316 KOG4628 Predicted E3 ubiquitin 49.4 28 0.0006 38.9 5.3 41 958-999 231-276 (348)
317 KOG1063 RNA polymerase II elon 49.0 2.1E+02 0.0046 34.7 12.5 143 16-177 54-214 (764)
318 KOG4190 Uncharacterized conser 48.6 1.6E+02 0.0034 34.5 11.0 160 18-190 737-912 (1034)
319 PF10607 CLTH: CTLH/CRA C-term 48.5 36 0.00077 33.0 5.6 60 305-364 6-65 (145)
320 TIGR02917 PEP_TPR_lipo putativ 48.5 6.7E+02 0.014 31.7 29.2 58 303-365 25-82 (899)
321 KOG3630 Nuclear pore complex, 48.4 1.4E+02 0.0031 38.3 11.4 141 75-217 100-264 (1405)
322 COG5432 RAD18 RING-finger-cont 47.8 4.1 8.8E-05 43.1 -1.3 45 953-1000 22-69 (391)
323 PF12854 PPR_1: PPR repeat 47.7 24 0.00053 24.9 3.1 26 301-326 8-33 (34)
324 KOG3617 WD40 and TPR repeat-co 47.6 30 0.00066 42.3 5.5 69 304-372 1097-1178(1416)
325 PF13374 TPR_10: Tetratricopep 47.4 28 0.00062 25.0 3.7 26 549-574 5-30 (42)
326 PF13181 TPR_8: Tetratricopept 47.4 33 0.00072 23.6 3.8 26 549-574 4-29 (34)
327 KOG1538 Uncharacterized conser 47.3 4.1E+02 0.0089 32.2 14.3 73 542-630 641-715 (1081)
328 PF08309 LVIVD: LVIVD repeat; 47.1 67 0.0014 24.1 5.4 31 17-47 2-32 (42)
329 KOG1941 Acetylcholine receptor 47.1 3 6.6E-05 45.9 -2.4 41 956-997 365-412 (518)
330 TIGR00756 PPR pentatricopeptid 46.8 31 0.00068 23.4 3.6 27 549-575 3-29 (35)
331 PF12854 PPR_1: PPR repeat 46.7 28 0.0006 24.6 3.2 24 548-571 9-32 (34)
332 KOG2315 Predicted translation 46.6 3.4E+02 0.0073 32.2 13.4 110 110-228 266-394 (566)
333 TIGR02795 tol_pal_ybgF tol-pal 45.9 43 0.00094 30.4 5.5 65 306-379 45-109 (119)
334 KOG0265 U5 snRNP-specific prot 45.9 4.4E+02 0.0096 28.9 16.8 154 13-187 44-207 (338)
335 KOG2932 E3 ubiquitin ligase in 45.6 7 0.00015 41.9 0.0 38 957-996 91-129 (389)
336 PF13174 TPR_6: Tetratricopept 45.0 34 0.00074 23.1 3.6 26 550-575 4-29 (33)
337 COG5540 RING-finger-containing 45.0 7.4 0.00016 41.6 0.1 40 957-997 324-368 (374)
338 PF04762 IKI3: IKI3 family; I 44.8 8.4E+02 0.018 31.8 31.4 284 27-326 362-720 (928)
339 PF08553 VID27: VID27 cytoplas 44.6 57 0.0012 40.9 7.6 67 16-101 577-645 (794)
340 KOG0264 Nucleosome remodeling 44.5 2.1E+02 0.0046 32.8 11.2 110 16-143 272-404 (422)
341 cd00029 C1 Protein kinase C co 44.4 13 0.00029 28.5 1.4 38 954-992 9-49 (50)
342 TIGR03300 assembly_YfgL outer 44.3 5.2E+02 0.011 29.3 25.8 243 21-300 60-337 (377)
343 PF07719 TPR_2: Tetratricopept 43.9 39 0.00085 23.0 3.8 26 549-574 4-29 (34)
344 KOG4328 WD40 protein [Function 43.8 2.4E+02 0.0052 32.6 11.4 113 18-145 324-452 (498)
345 TIGR00599 rad18 DNA repair pro 43.7 6.7 0.00015 44.8 -0.5 43 953-998 23-68 (397)
346 COG5276 Uncharacterized conser 43.1 4.9E+02 0.011 28.6 14.9 155 22-193 177-336 (370)
347 COG4946 Uncharacterized protei 42.8 6.1E+02 0.013 29.6 19.2 113 78-193 364-486 (668)
348 COG4946 Uncharacterized protei 42.7 4.8E+02 0.01 30.4 13.5 106 22-148 367-482 (668)
349 PF13041 PPR_2: PPR repeat fam 42.3 38 0.00081 26.0 3.7 29 549-577 6-34 (50)
350 KOG1275 PAB-dependent poly(A) 42.0 2.1E+02 0.0046 35.9 11.3 102 19-141 180-294 (1118)
351 KOG3630 Nuclear pore complex, 41.7 1E+02 0.0022 39.6 8.8 131 27-171 114-257 (1405)
352 PF12688 TPR_5: Tetratrico pep 41.3 52 0.0011 31.0 5.2 55 309-365 47-101 (120)
353 KOG0301 Phospholipase A2-activ 41.0 3.3E+02 0.0072 33.1 12.5 155 16-181 101-284 (745)
354 PLN03088 SGT1, suppressor of 40.5 39 0.00084 38.6 5.0 21 305-325 7-27 (356)
355 smart00320 WD40 WD40 repeats. 40.5 52 0.0011 21.6 4.1 27 16-42 12-40 (40)
356 KOG3039 Uncharacterized conser 39.8 12 0.00027 38.8 0.8 42 955-997 220-266 (303)
357 KOG0639 Transducin-like enhanc 39.6 3.7E+02 0.008 31.4 12.1 149 17-186 419-583 (705)
358 PF13812 PPR_3: Pentatricopept 39.6 51 0.0011 22.5 3.8 27 548-574 3-29 (34)
359 PF04423 Rad50_zn_hook: Rad50 39.0 9.9 0.00021 30.2 -0.1 12 957-968 21-32 (54)
360 KOG4640 Anaphase-promoting com 38.8 1.2E+02 0.0026 36.4 8.4 90 75-166 20-114 (665)
361 KOG0301 Phospholipase A2-activ 38.6 8.3E+02 0.018 30.0 22.8 264 6-301 4-288 (745)
362 PF13428 TPR_14: Tetratricopep 38.5 47 0.001 24.7 3.6 27 549-575 4-30 (44)
363 PRK01742 tolB translocation pr 37.6 7.2E+02 0.016 29.0 18.1 128 79-213 251-388 (429)
364 PRK04922 tolB translocation pr 37.4 7.3E+02 0.016 28.9 21.0 141 80-226 252-413 (433)
365 PF13176 TPR_7: Tetratricopept 37.3 47 0.001 23.6 3.3 22 344-365 4-25 (36)
366 TIGR02552 LcrH_SycD type III s 37.2 45 0.00097 31.5 4.3 54 307-365 24-77 (135)
367 KOG2659 LisH motif-containing 36.5 73 0.0016 33.4 5.7 59 304-364 68-128 (228)
368 KOG0295 WD40 repeat-containing 36.5 3.5E+02 0.0075 30.4 11.0 61 27-106 305-367 (406)
369 PLN03088 SGT1, suppressor of 35.6 51 0.0011 37.6 5.0 52 309-365 45-96 (356)
370 PHA02610 uvsY.-2 hypothetical 35.1 21 0.00044 27.7 1.1 30 957-987 2-31 (53)
371 PF06433 Me-amine-dh_H: Methyl 35.0 4.9E+02 0.011 29.3 12.1 149 97-249 19-192 (342)
372 PF10395 Utp8: Utp8 family; I 34.8 9.7E+02 0.021 29.7 19.7 200 17-225 72-306 (670)
373 COG4068 Uncharacterized protei 34.1 23 0.00051 28.2 1.3 18 952-969 4-21 (64)
374 smart00668 CTLH C-terminal to 34.0 81 0.0018 24.9 4.6 51 304-354 5-55 (58)
375 KOG0303 Actin-binding protein 33.7 7.7E+02 0.017 28.2 17.6 108 26-145 94-205 (472)
376 PF13374 TPR_10: Tetratricopep 33.5 58 0.0013 23.3 3.4 23 343-365 6-28 (42)
377 PF14781 BBS2_N: Ciliary BBSom 33.5 67 0.0015 30.8 4.5 34 14-48 45-85 (136)
378 PF04641 Rtf2: Rtf2 RING-finge 32.9 23 0.00049 38.4 1.5 43 956-999 113-159 (260)
379 KOG1538 Uncharacterized conser 32.7 1E+03 0.022 29.2 18.0 183 77-261 14-250 (1081)
380 COG4338 Uncharacterized protei 32.5 16 0.00034 27.8 0.2 15 954-968 10-24 (54)
381 PF06977 SdiA-regulated: SdiA- 32.1 6.7E+02 0.014 27.0 14.7 152 17-181 65-247 (248)
382 PF00515 TPR_1: Tetratricopept 31.8 69 0.0015 22.0 3.4 25 549-573 4-28 (34)
383 PRK02603 photosystem I assembl 31.7 83 0.0018 31.4 5.4 55 309-365 44-98 (172)
384 PRK10803 tol-pal system protei 31.7 1E+02 0.0022 33.5 6.3 63 308-379 188-250 (263)
385 COG2075 RPL24A Ribosomal prote 31.4 51 0.0011 27.2 2.8 35 956-992 3-39 (66)
386 PF13424 TPR_12: Tetratricopep 31.3 62 0.0013 27.2 3.7 26 340-365 6-31 (78)
387 smart00109 C1 Protein kinase C 31.3 12 0.00025 28.6 -0.8 37 954-991 9-47 (49)
388 PF07494 Reg_prop: Two compone 30.6 70 0.0015 20.6 2.9 19 17-35 5-24 (24)
389 smart00028 TPR Tetratricopepti 30.5 58 0.0012 20.7 2.8 24 342-365 4-27 (34)
390 KOG0300 WD40 repeat-containing 30.5 5.1E+02 0.011 28.5 10.8 99 8-126 349-456 (481)
391 PF01011 PQQ: PQQ enzyme repea 30.5 63 0.0014 23.3 3.0 19 27-45 1-19 (38)
392 PF12234 Rav1p_C: RAVE protein 30.0 6E+02 0.013 31.3 12.8 95 126-222 40-154 (631)
393 KOG0641 WD40 repeat protein [G 29.8 6.6E+02 0.014 26.2 11.7 119 12-142 179-327 (350)
394 PF10013 DUF2256: Uncharacteri 29.7 29 0.00062 25.9 1.1 14 955-968 7-20 (42)
395 KOG0300 WD40 repeat-containing 29.7 7.9E+02 0.017 27.1 12.1 110 17-145 315-430 (481)
396 PF13445 zf-RING_UBOX: RING-ty 29.6 26 0.00057 26.4 0.9 27 959-988 1-30 (43)
397 PF08728 CRT10: CRT10; InterP 29.6 1E+03 0.023 29.7 14.7 149 15-167 39-220 (717)
398 KOG3611 Semaphorins [Signal tr 28.8 2.5E+02 0.0053 35.3 9.5 80 10-101 400-490 (737)
399 PF07721 TPR_4: Tetratricopept 28.6 58 0.0012 21.3 2.3 21 550-570 5-25 (26)
400 PF00400 WD40: WD domain, G-be 28.5 2.1E+02 0.0045 20.0 5.7 28 74-101 10-39 (39)
401 KOG4577 Transcription factor L 28.4 14 0.00031 39.0 -0.9 31 956-987 92-122 (383)
402 KOG4340 Uncharacterized conser 28.3 68 0.0015 34.8 4.0 63 298-365 8-70 (459)
403 PF13771 zf-HC5HC2H: PHD-like 28.1 42 0.00092 29.5 2.2 34 956-990 36-70 (90)
404 KOG1408 WD40 repeat protein [F 28.0 8E+02 0.017 30.3 12.7 95 72-168 593-694 (1080)
405 KOG0321 WD40 repeat-containing 27.8 3.3E+02 0.0071 32.9 9.6 123 21-143 151-301 (720)
406 PF07035 Mic1: Colon cancer-as 27.7 3E+02 0.0066 27.6 8.3 36 733-769 80-116 (167)
407 PRK15359 type III secretion sy 27.7 68 0.0015 31.2 3.7 52 309-365 67-118 (144)
408 KOG3881 Uncharacterized conser 27.6 9.6E+02 0.021 27.3 15.7 149 17-186 106-279 (412)
409 KOG1445 Tumor-specific antigen 27.5 2.7E+02 0.0058 33.5 8.7 109 74-185 78-201 (1012)
410 PRK01742 tolB translocation pr 27.3 1E+03 0.022 27.6 23.6 111 75-188 203-328 (429)
411 PF12894 Apc4_WD40: Anaphase-p 27.1 1.7E+02 0.0038 22.5 5.0 38 148-186 2-42 (47)
412 KOG2280 Vacuolar assembly/sort 27.0 1E+03 0.022 29.7 13.6 48 119-169 221-271 (829)
413 KOG0302 Ribosome Assembly prot 27.0 4.1E+02 0.0088 30.1 9.6 101 26-143 270-378 (440)
414 TIGR00540 hemY_coli hemY prote 26.9 7.1E+02 0.015 28.8 12.8 27 549-575 190-216 (409)
415 KOG2395 Protein involved in va 26.7 1.5E+02 0.0032 34.9 6.5 66 17-101 431-498 (644)
416 PF02318 FYVE_2: FYVE-type zin 26.5 4E+02 0.0086 24.9 8.5 33 955-988 53-88 (118)
417 PF01403 Sema: Sema domain; I 26.5 1.5E+02 0.0033 34.7 7.1 71 5-86 350-432 (433)
418 PF14835 zf-RING_6: zf-RING of 26.3 31 0.00067 28.4 0.8 43 956-1000 7-50 (65)
419 COG5110 RPN1 26S proteasome re 26.2 82 0.0018 37.0 4.4 40 730-770 243-282 (881)
420 PRK15174 Vi polysaccharide exp 26.1 1.3E+03 0.029 28.6 26.4 60 301-365 43-102 (656)
421 KOG4547 WD40 repeat-containing 25.9 8.3E+02 0.018 29.2 12.4 119 27-166 71-193 (541)
422 PRK14891 50S ribosomal protein 25.8 48 0.0011 31.1 2.1 30 957-988 5-36 (131)
423 TIGR02552 LcrH_SycD type III s 25.8 1.1E+02 0.0024 28.7 4.9 54 307-365 58-111 (135)
424 CHL00033 ycf3 photosystem I as 25.7 1.1E+02 0.0025 30.2 5.1 54 310-365 45-98 (168)
425 KOG4499 Ca2+-binding protein R 25.7 8.3E+02 0.018 26.0 19.1 110 136-279 138-256 (310)
426 COG1885 Uncharacterized protei 25.3 1E+02 0.0022 27.8 3.8 32 940-972 32-64 (115)
427 KOG1174 Anaphase-promoting com 25.1 99 0.0021 35.2 4.6 51 309-365 447-497 (564)
428 KOG1963 WD40 repeat protein [G 25.0 8.4E+02 0.018 30.6 12.7 109 19-143 208-322 (792)
429 KOG0612 Rho-associated, coiled 25.0 5.7 0.00012 50.3 -5.3 179 84-280 1092-1293(1317)
430 KOG0308 Conserved WD40 repeat- 24.7 8.2E+02 0.018 29.8 12.1 106 27-145 38-150 (735)
431 COG1729 Uncharacterized protei 24.3 1.4E+02 0.0031 32.1 5.6 58 303-365 144-204 (262)
432 KOG4532 WD40-like repeat conta 24.2 9.2E+02 0.02 26.2 11.2 70 117-186 161-235 (344)
433 PF10516 SHNi-TPR: SHNi-TPR; 24.0 99 0.0021 22.7 3.0 26 340-365 2-27 (38)
434 KOG3799 Rab3 effector RIM1 and 23.9 1.4E+02 0.003 28.3 4.6 32 946-983 55-86 (169)
435 PF04841 Vps16_N: Vps16, N-ter 23.7 1.2E+03 0.026 27.1 23.5 102 158-273 217-323 (410)
436 KOG3621 WD40 repeat-containing 23.6 1.5E+03 0.031 28.1 14.9 30 16-45 124-155 (726)
437 KOG3380 Actin-related protein 23.5 2E+02 0.0043 28.0 5.7 72 295-366 30-102 (152)
438 PF09889 DUF2116: Uncharacteri 23.3 49 0.0011 26.9 1.4 14 955-968 2-15 (59)
439 KOG0804 Cytoplasmic Zn-finger 23.2 32 0.00069 39.2 0.5 43 954-997 173-218 (493)
440 KOG0272 U4/U6 small nuclear ri 23.2 1.2E+03 0.026 26.9 18.7 242 14-280 175-434 (459)
441 PF14779 BBS1: Ciliary BBSome 23.0 92 0.002 33.5 3.9 28 17-44 177-213 (257)
442 CHL00033 ycf3 photosystem I as 23.0 1.6E+02 0.0034 29.2 5.5 70 309-378 81-152 (168)
443 PRK00807 50S ribosomal protein 22.9 91 0.002 24.6 2.9 30 957-988 2-33 (52)
444 KOG1275 PAB-dependent poly(A) 22.8 8.7E+02 0.019 31.0 12.1 100 81-183 180-295 (1118)
445 KOG1896 mRNA cleavage and poly 22.6 2.6E+02 0.0057 36.3 8.0 72 112-184 1094-1166(1366)
446 TIGR02800 propeller_TolB tol-p 22.3 1.2E+03 0.026 26.6 21.1 193 26-244 201-416 (417)
447 PF00412 LIM: LIM domain; Int 22.3 44 0.00096 26.5 1.1 28 957-986 27-54 (58)
448 PF00780 CNH: CNH domain; Int 22.2 9.7E+02 0.021 25.5 18.8 138 122-263 3-165 (275)
449 PRK03629 tolB translocation pr 22.2 1.3E+03 0.028 26.9 21.4 203 21-247 205-428 (429)
450 KOG3616 Selective LIM binding 22.1 5.4E+02 0.012 31.7 10.0 36 535-570 897-932 (1636)
451 KOG1310 WD40 repeat protein [G 21.9 2.8E+02 0.0061 32.8 7.5 73 16-106 50-128 (758)
452 PRK14720 transcript cleavage f 21.7 9.9E+02 0.021 30.9 13.0 31 548-578 171-201 (906)
453 KOG3785 Uncharacterized conser 21.7 1.8E+02 0.0039 32.4 5.7 65 293-364 18-82 (557)
454 cd00189 TPR Tetratricopeptide 21.6 1.2E+02 0.0027 24.9 4.0 54 307-365 41-94 (100)
455 PF07720 TPR_3: Tetratricopept 21.5 1E+02 0.0022 22.2 2.6 19 345-363 7-25 (36)
456 PRK00420 hypothetical protein; 21.2 65 0.0014 29.9 2.0 26 956-987 23-48 (112)
457 KOG0265 U5 snRNP-specific prot 21.2 1.1E+03 0.024 25.9 13.6 72 16-106 174-249 (338)
458 PF12569 NARP1: NMDA receptor- 21.1 1.5E+03 0.032 27.4 13.9 29 548-576 40-68 (517)
459 TIGR02521 type_IV_pilW type IV 21.1 1.7E+02 0.0037 29.7 5.6 54 307-365 38-91 (234)
460 PRK05137 tolB translocation pr 21.0 1.3E+03 0.029 26.7 22.9 134 75-212 201-349 (435)
461 KOG1587 Cytoplasmic dynein int 21.0 1.5E+03 0.033 27.4 16.8 77 16-105 242-325 (555)
462 cd00065 FYVE FYVE domain; Zinc 21.0 45 0.00097 26.5 0.8 36 956-992 2-39 (57)
463 PF08309 LVIVD: LVIVD repeat; 20.9 2.5E+02 0.0054 21.1 4.7 30 158-187 2-32 (42)
464 PF04564 U-box: U-box domain; 20.9 38 0.00082 28.7 0.4 40 955-997 3-46 (73)
465 PF00628 PHD: PHD-finger; Int 20.7 1.2E+02 0.0025 23.4 3.2 36 958-994 1-37 (51)
466 KOG4227 WD40 repeat protein [G 20.6 7.4E+02 0.016 28.1 10.0 109 17-142 106-224 (609)
467 KOG1272 WD40-repeat-containing 20.6 4.1E+02 0.009 30.8 8.4 88 76-167 252-344 (545)
468 KOG0321 WD40 repeat-containing 20.5 2.2E+02 0.0048 34.2 6.4 63 26-104 64-131 (720)
469 KOG0828 Predicted E3 ubiquitin 20.2 14 0.0003 42.2 -3.0 45 953-998 568-631 (636)
470 PF03704 BTAD: Bacterial trans 20.0 1.9E+02 0.0041 27.8 5.2 56 305-365 67-122 (146)
No 1
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-108 Score=964.01 Aligned_cols=847 Identities=38% Similarity=0.588 Sum_probs=703.1
Q ss_pred CCCcccccccccCCCCcEE-EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeE
Q 001851 2 VHNAFDSLELISNCSPKID-AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILS 80 (1004)
Q Consensus 2 ~~~~f~~~~l~~~~~~~I~-ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~q 80 (1004)
||.||++.+++-.+|..|+ |++.||+.||+||.+|.|++|.+.......++. .-.-++.+ ...|+|+||.+
T Consensus 1 m~~a~~~~~i~~~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~-----~~~~~~~~---~~~~~kk~i~~ 72 (877)
T KOG2063|consen 1 MHKAFTLVEILERLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVE-----LVTETVKF---EKEFSKKPINK 72 (877)
T ss_pred CCcccchhhHhhhcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchh-----hhcchhHH---hhhhccchhHH
Confidence 8999999999999999999 999999999999999999999998875543210 00001111 13467999999
Q ss_pred EEEecccCceeeeeCc-eEEEeCCCCcccccccCCCCcEEEEecCCC---c----EEEEEECCeEEEEEecCCCceeEee
Q 001851 81 MEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANVYSWDDRR---G----FLCFARQKRVCIFRHDGGRGFVEVK 152 (1004)
Q Consensus 81 I~~l~~~~~ll~l~d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~---~----~l~V~~kkki~l~~~~~~~~f~~~k 152 (1004)
|.+++..+++++++|+ +.+|.++++++.+..++.||++.|+.+..+ + .+|+..++++..|.|.++..+...+
T Consensus 73 l~~~~~~~~ll~l~dsqi~~~~l~~~~~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~ 152 (877)
T KOG2063|consen 73 LLVCASLELLLILSDSQIAVHKLPELEPVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVK 152 (877)
T ss_pred HhhcchhcchheecCCcceeeecCcccccccccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEE
Confidence 9999999999999995 999999999998888999999999997654 4 6888889999999998655677889
Q ss_pred eeecCCCceEEEecCCeEEEEEcCceEEEEcCCC-CcccccCCC---CCCCCEEEEccCC-eEEEEeCCeEEEEcCCCCc
Q 001851 153 DFGVPDTVKSMSWCGENICIAIRKGYMILNATNG-ALSEVFPSG---RIGPPLVVSLLSG-ELLLGKENIGVFVDQNGKL 227 (1004)
Q Consensus 153 Ei~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~-~~~~L~~~~---~~~~p~i~~~~~~-E~Ll~~~~~gvfv~~~G~~ 227 (1004)
++.+++.|.+++|+|..+|+|..+.|++++..+. ....+++.+ .+..|+|+.+.++ +++++.|+.|+|||.+|.+
T Consensus 153 ~~~~~~~p~~~~~~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~ 232 (877)
T KOG2063|consen 153 ELGFPDVPKARAWCGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGII 232 (877)
T ss_pred ecccccchhhhcccceeEEEeecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEecCCcc
Confidence 9999999999999999999999988888887754 444566665 4578999999998 8899999999999999998
Q ss_pred ccCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEE-eeCCccccccCCC-eEEEEeCCeEEEecccC-hH
Q 001851 228 LQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTI-VLQNVRHLIPSSN-AVVVALENSIFGLFPVP-LG 304 (1004)
Q Consensus 228 ~~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti-~l~~~~~l~~~~~-~v~vas~~~i~~l~~~~-~~ 304 (1004)
..++++.|+..|.++++.+||++|+.+.++|||++. ++.+||+| +++.++.++++.+ .+|+++.+.+|+|.|+| +.
T Consensus 233 ~~~~~l~ws~~P~~v~~~~PYlIa~~~~~veI~s~~-~~qlvQSI~~~~~~~~l~s~~~~i~~~~~~s~v~~L~p~~~~~ 311 (877)
T KOG2063|consen 233 AQRGTLVWSEVPLSVVVESPYLIALLDRSVEIRSKL-DGQLVQSITPLSNGRSLLSAHNGIIFVASLSNVWILVPVSNFE 311 (877)
T ss_pred cCCCceEecccchhhcccCceEEEEccccEEEEecc-CHHHhhccccccccceeeecCCcEEEEEeccceEEEEeccchH
Confidence 668999999999999999999999999999999997 68999999 9999888776554 55566669999999999 99
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHH-HHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCCCCCC
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRF-AHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPK 383 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~-a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~~~~~ 383 (1004)
.||+.|++.++|++|++|++.... ..+.+...+..++.++ |+.+|.+++|++||.+|.++.+||+.||+|||++++..
T Consensus 312 ~qi~~lL~~k~fe~ai~L~e~~~~-~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~~ 390 (877)
T KOG2063|consen 312 KQIQDLLQEKSFEEAISLAEILDS-PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPSE 390 (877)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCC-CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCCc
Confidence 999999999999999999987642 3333334556777777 89999999999999999999999999999999987543
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001851 384 TTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEG 463 (1004)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~~~~~~~~~~a~~~L~~yL~~~R~~~~~~~~~~~ 463 (1004)
... -.|+..+.. +-+..+.+|. ..|..+++.||+..|+...+..+..
T Consensus 391 ~~~----~~~~~~vp~------------------~~~~~~~~~~----------v~a~l~~~~ylt~~r~~~~~~l~~~- 437 (877)
T KOG2063|consen 391 NSS----IEFTGVVPI------------------RAPELRGGDL----------VPAVLALIVYLTQSRREENKKLNKY- 437 (877)
T ss_pred ccc----cceeeeccC------------------chhhhccCcc----------cchhhhhhhHhHHHHHHHHHHHHHh-
Confidence 311 011111110 0001111110 1345588889888887654332211
Q ss_pred chhhhhhcccCCCcCCCccccccCCCCCCCccccchHHHHHHHHHHHHHHHHHhcCChhhHHhhhcCCC-cccHHHHHHH
Q 001851 464 TEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLN-YCDVKICEEI 542 (1004)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~yl~~~~~~~l~~ll~~~n-~c~~~~~~~~ 542 (1004)
.+ +. + +.+++ ...+.....+...++++|||+|+|||+++++ ....+++|.+| +|++++++.+
T Consensus 438 ----~m-----~~--~--~~~~~---~~~s~~~~~~~~~~~~~IDttLlk~Yl~~n~-~~v~~llrlen~~c~vee~e~~ 500 (877)
T KOG2063|consen 438 ----KM-----LY--M--NYFKN---TLISELLKSDLNDILELIDTTLLKCYLETNP-GLVGPLLRLENNHCDVEEIETV 500 (877)
T ss_pred ----hh-----hH--H--hhhhc---cCcchhhccchHHHHHHHHHHHHHHHHhcCc-hhhhhhhhccCCCcchHHHHHH
Confidence 00 00 0 00000 0001111233667889999999999999985 45678999775 9999999999
Q ss_pred HHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhccc-CCCCccccccCCChHhHHHHhcccCCCCchhHHhhchhhhccCc
Q 001851 543 LQKKNHYTALLELYKSNARHREALKLLHELVEESK-SNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCP 621 (1004)
Q Consensus 543 L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~-~~~~~~~~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~p 621 (1004)
|+++++|.+|+.||+.+|+|++||++|.+++++.. .|+ ....+++.+++||+++..++.+|||+|+.|+++.+|
T Consensus 501 L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-----~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p 575 (877)
T KOG2063|consen 501 LKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-----FQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP 575 (877)
T ss_pred HHhcccHHHHHHHHHhccchHHHHHHHHHHhcccccccc-----chhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc
Confidence 99999999999999999999999999999998763 433 233467889999999999999999999999999999
Q ss_pred cchhccccc------CCCChHHHHHHHhhcCccchhhhHHHHHhcccCCCCcchHHHHHHHHHHHHHH-hhhhhhhhccc
Q 001851 622 TQTIELFLS------GNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLD-WYSDLSAQQKW 694 (1004)
Q Consensus 622 ~~~i~if~~------~~l~~~~vl~~L~~~~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~~~~-~~~~~~~~~~~ 694 (1004)
+.|++||++ +++++++|++||.+..+.+.+.|||++|.++ ......|||.|+.+|++.+.+ ...+ ++.
T Consensus 576 ~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~-~~~~~~lht~ll~ly~e~v~~~~~~~----~kg 650 (877)
T KOG2063|consen 576 EAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN-RLTSTLLHTVLLKLYLEKVLEQASTD----GKG 650 (877)
T ss_pred hhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc-cccchHHHHHHHHHHHHHHhhccCch----hcc
Confidence 999999998 2599999999999999999999999999876 446789999999999999884 1111 111
Q ss_pred CcccchH-HHHHHHHHHhhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhhcc
Q 001851 695 DEKAYSP-TRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIA 773 (1004)
Q Consensus 695 ~~~~~~~-~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~ 773 (1004)
+ +.... .|+||..||+.|+.|+++.+|..++.+.|++|+++++||+|+|++||+||++.|+|+++|+.||..+|+.
T Consensus 651 ~-e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~-- 727 (877)
T KOG2063|consen 651 E-EAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYES-- 727 (877)
T ss_pred c-cchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccC--
Confidence 1 11122 5999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred CCCCCCCCCChHHHHHHHhcCCCCCcchhhhhhcccccCCCCCCCCCCcccceeccCCccccchhcccccccccCCCCCC
Q 001851 774 HQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSST 853 (1004)
Q Consensus 774 ~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1004)
+....+.|..||.+|+.+..+ + .
T Consensus 728 ----~~~~~~~y~~lL~~~l~~~~d---~------------~-------------------------------------- 750 (877)
T KOG2063|consen 728 ----DKTNKEIYLTLLRIYLNPIHD---Y------------K-------------------------------------- 750 (877)
T ss_pred ----CCcccHHHHHHHHHHhcchhh---c------------c--------------------------------------
Confidence 235789999999999987221 0 0
Q ss_pred CCCCCCCCcccccccCCccccHHHHHHHHhhccCCCChhhhcccCCcccchhchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001851 854 DSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQ 933 (1004)
Q Consensus 854 ~s~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~~lP~~~~l~~l~~fL~~~l~~~~~~~r~~~i~~~l~~ 933 (1004)
...-.++.+|++|++++|+..|+++||++|++..+.+|+.+.||...+..|+.++.+++++
T Consensus 751 -------------------~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~l~q 811 (877)
T KOG2063|consen 751 -------------------SGPLYILNFLQKHADRLDLAQVLKLLPDDISLKDLCSFLSKLLRKRFEALRTTQVQKSLLQ 811 (877)
T ss_pred -------------------ccchhhhhHHHhhhhhcCHHHHHHhCCccCcHhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 0023577799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccceEEECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccCCchhhhhhccC
Q 001851 934 SENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKG 998 (1004)
Q Consensus 934 ~~~~~~~~el~~~~~~~v~i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~~~~~~~~~~ 998 (1004)
++++...+++.+.++..++|+.+..|.+|.|+||.++|++||+| +++|++|.++.|+...+++.
T Consensus 812 ~E~~~~~~~l~~~~s~~~~l~~~~~C~~C~k~i~~s~f~ryp~g-~lvh~~C~~~~q~~~~~~~~ 875 (877)
T KOG2063|consen 812 AELLPSTEELNKLRSSKIQLNDESLCSICEKRIGTSVFVRYPNG-ILVHLSCAKDLQGSKAVKNE 875 (877)
T ss_pred HhhcchHHHHHHhhcceEEEchhhHhHHHHhhhcCeeEEECCCC-cEEEEEeechhccccccCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999888764
No 2
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-48 Score=438.81 Aligned_cols=753 Identities=16% Similarity=0.235 Sum_probs=522.3
Q ss_pred cccccc--ccCCCC-cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEE
Q 001851 6 FDSLEL--ISNCSP-KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSME 82 (1004)
Q Consensus 6 f~~~~l--~~~~~~-~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~ 82 (1004)
|+-.++ ..++.+ .|+|++..++.++|||.+|.|.+++-. +++.+.+..+...-|++|.
T Consensus 12 Fq~~~i~~~~~~~G~~isc~~s~~~~vvigt~~G~V~~Ln~s-------------------~~~~~~fqa~~~siv~~L~ 72 (933)
T KOG2114|consen 12 FQWKEIPSLENFVGNAISCCSSSTGSVVIGTADGRVVILNSS-------------------FQLIRGFQAYEQSIVQFLY 72 (933)
T ss_pred eeeeecCCcccCCCCceeEEcCCCceEEEeeccccEEEeccc-------------------ceeeehheecchhhhhHhh
Confidence 555555 456655 999999999999999999999998632 3333444445444588899
Q ss_pred EecccCceeeeeC---c----eEEEeCCCCcccc--------cc------cCCCCcEEEEecCCCcEEEEE-ECCeEEEE
Q 001851 83 VLASRQLLLSLSE---S----IAFHRLPNLETIA--------VL------TKAKGANVYSWDDRRGFLCFA-RQKRVCIF 140 (1004)
Q Consensus 83 ~l~~~~~ll~l~d---~----v~~~~L~~l~~~~--------~i------~~~kg~~~f~~~~~~~~l~V~-~kkki~l~ 140 (1004)
++...++|+++++ | |.+|+|...++-. .+ .....+++++++.+-..|+|| ..+.|.+|
T Consensus 73 ~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~ 152 (933)
T KOG2114|consen 73 ILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY 152 (933)
T ss_pred cccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence 9999899999976 2 7888885431100 11 123456777887777778888 88899999
Q ss_pred EecC--CCceeEeeeeecCCCceEEEecCC--e-EEEEEcCceEEEEcCCCCcccccCCCCCCCCEEEEc---cCCeEEE
Q 001851 141 RHDG--GRGFVEVKDFGVPDTVKSMSWCGE--N-ICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSL---LSGELLL 212 (1004)
Q Consensus 141 ~~~~--~~~f~~~kEi~l~d~~~~l~~~~~--~-i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~---~~~E~Ll 212 (1004)
+.+. ++..+...+....++|++++++.+ . ++|++.+...++.+.+ +...+-..+..+-++-|+. +.++|++
T Consensus 153 ~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 153 KGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred cCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCccceeeecCCCCccEEE
Confidence 9763 222222224456789999999843 3 6888889899999984 3322221222333444433 4457999
Q ss_pred EeCCeEEEEcCCCCcccCcceeec-CCCceE-EEeCCeEEEEcCC-eeEEEEccCCCceeEEEe---eCCc---------
Q 001851 213 GKENIGVFVDQNGKLLQADRICWS-EAPIAV-IIQKPYAIALLPR-RVEVRSLRVPYALIQTIV---LQNV--------- 277 (1004)
Q Consensus 213 ~~~~~gvfv~~~G~~~~~~~i~w~-~~P~~i-~~~~PYll~~~~~-~ieV~~l~~~~~lvQti~---l~~~--------- 277 (1004)
|.++...|++.+|+ +....|. +....+ ++.+-|++++++. +.+.-+..+ ....+.+. +.+.
T Consensus 232 a~~e~l~fY~sd~~---~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~~s~s~-ss~~~i~~~~d~~n~~v~ys~vl~ 307 (933)
T KOG2114|consen 232 AGSEFLYFYDSDGR---GPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTENTSLSN-SSSNRIFKAYDLRNRYVLYSSVLE 307 (933)
T ss_pred ecCceEEEEcCCCc---ceeeeecCCCeEEEEEEecCEEEEEEccCCCCCcccCc-cchhheeehhhhcCcccchHHhHH
Confidence 99999999999997 4577777 555444 4555899998873 222222211 11111111 1111
Q ss_pred ---cccccCC-CeEEEEeCCeEEEecccChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCC
Q 001851 278 ---RHLIPSS-NAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTG 353 (1004)
Q Consensus 278 ---~~l~~~~-~~v~vas~~~i~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~ 353 (1004)
+.+...+ +.+++++++.+++|.+++++.+|+.|+++..|+.|++||++.. .+ ...++.|+.+||.+||.+|
T Consensus 308 ~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~-~d----~d~~~~i~~kYgd~Ly~Kg 382 (933)
T KOG2114|consen 308 DLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH-LD----EDTLAEIHRKYGDYLYGKG 382 (933)
T ss_pred HHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC-CC----HHHHHHHHHHHHHHHHhcC
Confidence 1112223 5677899999999999999999999999999999999998753 12 2367899999999999999
Q ss_pred CHHHHHHHHHhc--CCCHHHHHHhCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhh
Q 001851 354 SYEEAMEHFLAS--QVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATL 431 (1004)
Q Consensus 354 ~f~~A~~~f~~~--~~dp~~vi~Lfp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~~ 431 (1004)
+|++|+++|+++ -+||.+||..|++-
T Consensus 383 df~~A~~qYI~tI~~le~s~Vi~kfLda---------------------------------------------------- 410 (933)
T KOG2114|consen 383 DFDEATDQYIETIGFLEPSEVIKKFLDA---------------------------------------------------- 410 (933)
T ss_pred CHHHHHHHHHHHcccCChHHHHHHhcCH----------------------------------------------------
Confidence 999999999985 58999999999532
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhcccCCCcCCCccccccCCCCCCCccccchHHHHHHHHHHHH
Q 001851 432 KSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTAL 511 (1004)
Q Consensus 432 ~~~~~~~~a~~~L~~yL~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~L 511 (1004)
+.+..|+.||+..+++.++. +..-|.|
T Consensus 411 -------q~IknLt~YLe~L~~~gla~----------------------------------------------~dhttlL 437 (933)
T KOG2114|consen 411 -------QRIKNLTSYLEALHKKGLAN----------------------------------------------SDHTTLL 437 (933)
T ss_pred -------HHHHHHHHHHHHHHHccccc----------------------------------------------chhHHHH
Confidence 35789999999988875421 1256889
Q ss_pred HHHHHhcCChhhHHhhhcCCC----cccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCcccccc
Q 001851 512 LQALLLTGQSSAALELLKGLN----YCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQ 587 (1004)
Q Consensus 512 l~~yl~~~~~~~l~~ll~~~n----~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~ 587 (1004)
+.||++.+|.+.+.+|++... ..|++.+.++|++.+++++.-.|....++|+.+|.++.+.
T Consensus 438 LncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~--------------- 502 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLED--------------- 502 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHH---------------
Confidence 999999999999999998532 4589999999999999999999999999999999999873
Q ss_pred CCChHhHHHHhcccCCCC-chhHHhhchhhhccCccchhccccc---CC-----------CChHHHHHHHhh--cCccch
Q 001851 588 KFNPESIIEYLKPLCGTD-PMLVLEFSMLVLESCPTQTIELFLS---GN-----------IPADLVNSYLKQ--YSPSMQ 650 (1004)
Q Consensus 588 ~~~~~~~~~yL~~L~~~~-~~li~~~~~wll~~~p~~~i~if~~---~~-----------l~~~~vl~~L~~--~~~~l~ 650 (1004)
.++++.+++|++.|+.++ ..++.+|++||++++|++++.+|++ +. .| +-++|+.- .+++..
T Consensus 503 ~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~--~~~~~i~if~~~~~~~ 580 (933)
T KOG2114|consen 503 LHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIP--DSIEFIGIFSQNYQIL 580 (933)
T ss_pred hcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCc--cchhheeeeccCHHHH
Confidence 245788999999998765 4688899999999999999998875 11 11 11111111 123445
Q ss_pred hhhHHHHHhcccCC-CCcchHHHHHHHHHHH---------------HHHhhhhhhhhc-ccCcc----------------
Q 001851 651 GRYLELMLAMNENS-ISGNLQNEMVQIYLSE---------------VLDWYSDLSAQQ-KWDEK---------------- 697 (1004)
Q Consensus 651 ~~YLE~li~~~~~~-~~~~~h~~L~~~Yl~~---------------~~~~~~~~~~~~-~~~~~---------------- 697 (1004)
..||+.+.....+. ....+...+.++++-. +.... . ..| +.|+.
T Consensus 581 ~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~-~--~~~~~sdpq~kt~~~~~l~~~~~~~ 657 (933)
T KOG2114|consen 581 LNFLESMSEISPDSEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQ-Q--YEGFDSDPQVKTTTLYDLYLELDAE 657 (933)
T ss_pred HHHHHHHHhcCCCchhhhccccchhhhhhhhccccccchhhccHHHHHHHH-h--hcccccChhhhhccchhhHHHHHhh
Confidence 55666544311000 0001111122222211 00000 0 000 00000
Q ss_pred ---cchHHHHHHHHHHhh-cCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhhcc
Q 001851 698 ---AYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIA 773 (1004)
Q Consensus 698 ---~~~~~r~kLl~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~ 773 (1004)
+....-.|--.++.. -+.||.+.+|-.++-+++.....++|+++|...+-+...- +..|++.+...|...+..
T Consensus 658 ~~~~~~~~l~ksn~l~d~~~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~~-q~~d~E~~it~~~~~g~~-- 734 (933)
T KOG2114|consen 658 DVPERTIILRKSNKLLDYAASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYFQ-QISDPETVITLCERLGKE-- 734 (933)
T ss_pred hcccccchhhhhcchhhhhhccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHHH-HhhChHHHHHHHHHhCcc--
Confidence 000011111112211 2458889999888888888999999999999999998777 889999999999998743
Q ss_pred CCCCCCCCCChHHHHHHHhcCCCCCcchhhhhhcccccCCCCCCCCCCcccceeccCCccccchhcccccccccCCCCCC
Q 001851 774 HQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSST 853 (1004)
Q Consensus 774 ~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1004)
++++|..+|+++.+...- ..
T Consensus 735 -------~p~l~~~~L~yF~~~~~i-------------------~~---------------------------------- 754 (933)
T KOG2114|consen 735 -------DPSLWLHALKYFVSEESI-------------------ED---------------------------------- 754 (933)
T ss_pred -------ChHHHHHHHHHHhhhcch-------------------hh----------------------------------
Confidence 789999999987653210 00
Q ss_pred CCCCCCCCcccccccCCccccHHHHHHHHhhccCCCChhhhcccCCcc--cchhchHHHHHHHHHhhHHHHHHHHHHHHH
Q 001851 854 DSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRE--TKLQNLLPFLEPLLRKSSEAHRNLSVIKSL 931 (1004)
Q Consensus 854 ~s~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~~lP~~--~~l~~l~~fL~~~l~~~~~~~r~~~i~~~l 931 (1004)
+ .+.+.++++-+. ...+|.|..||+.|-.+ ..++.++|++.+.++.+..+..+.+-.-..
T Consensus 755 -------------~----~~~v~~vl~~I~-~~~~ippl~VL~~Lakn~~ltls~IkD~ii~~l~~~~~~I~qd~~~Ie~ 816 (933)
T KOG2114|consen 755 -------------C----YEIVYKVLEAIE-MQERIPPLHVLQILAKNGTLTLSVIKDYIIKWLNKYSTIIEQDEDAIEV 816 (933)
T ss_pred -------------H----HHHHHHHHHHHH-hcccCCHHHHHHHHhcCCceEEehhHHHHHHHHHhhhHHHHhhHHHHHH
Confidence 0 112556666665 47899999999999864 788999999999999988765544322233
Q ss_pred HHHHHHHHHHHHHccccceEEECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccCCchhhhhhc
Q 001851 932 RQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVA 996 (1004)
Q Consensus 932 ~~~~~~~~~~el~~~~~~~v~i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~~~~~~~~ 996 (1004)
.+.+.-+.+.++..++.+.-.+ +.++|+.|+-+|..+.|+ |-|| |.+|++|+.+....||.=
T Consensus 817 yk~~i~e~r~~l~~lr~sa~i~-q~skCs~C~~~LdlP~Vh-F~Cg-HsyHqhC~e~~~~~CP~C 878 (933)
T KOG2114|consen 817 YKKDIEEKRQELETLRTSAQIF-QVSKCSACEGTLDLPFVH-FLCG-HSYHQHCLEDKEDKCPKC 878 (933)
T ss_pred HHHHHHHHHHHHHHhhccccee-eeeeecccCCccccceee-eecc-cHHHHHhhccCcccCCcc
Confidence 3444556677777777766555 569999999999999988 9999 999999999989999864
No 3
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-47 Score=427.33 Aligned_cols=707 Identities=17% Similarity=0.203 Sum_probs=494.3
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c
Q 001851 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (1004)
Q Consensus 18 ~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~ 96 (1004)
.|+|++.++.++++||..|.++++...+++. ++++.++. ..+++.+.++++ |
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~~----------------------~~~~~s~~-----~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGNPK----------------------TNFDHSSS-----ILEGEYVASCSDDG 93 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCccc----------------------cccccccc-----ccCCceEEEecCCC
Confidence 7899999999999999999999999887531 11222222 456788899987 7
Q ss_pred -eEEEeCCCCcccccccCCCCcEEEEecCCC----cEEEE-EECCeEEEEEecCCCceeEeeee---ecCCCceEEEecC
Q 001851 97 -IAFHRLPNLETIAVLTKAKGANVYSWDDRR----GFLCF-ARQKRVCIFRHDGGRGFVEVKDF---GVPDTVKSMSWCG 167 (1004)
Q Consensus 97 -v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~----~~l~V-~~kkki~l~~~~~~~~f~~~kEi---~l~d~~~~l~~~~ 167 (1004)
|.+..+.+-+..++....+....++++++. .+-|| |..+.+.+|+-. -|...+.+ ...+++.++.|+|
T Consensus 94 kv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~---wlgnk~~v~l~~~eG~I~~i~W~g 170 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERN---WLGNKDSVVLSEGEGPIHSIKWRG 170 (846)
T ss_pred cEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhh---hhcCccceeeecCccceEEEEecC
Confidence 888888776666666667888899998872 34444 444458888732 12222222 2357899999999
Q ss_pred CeEEEEEcCceEEEEcCCCCcccccCCC-C-----CCCCEEEEccCCeEEEE-eCCeEEEEcCCCCcccCcceeecCCC-
Q 001851 168 ENICIAIRKGYMILNATNGALSEVFPSG-R-----IGPPLVVSLLSGELLLG-KENIGVFVDQNGKLLQADRICWSEAP- 239 (1004)
Q Consensus 168 ~~i~v~~~~~y~lidl~~~~~~~L~~~~-~-----~~~p~i~~~~~~E~Ll~-~~~~gvfv~~~G~~~~~~~i~w~~~P- 239 (1004)
+.|.|++..|..++|+.+++.....+.. . ..+|...|.+++.++++ .+++-++.=.++......++..+..|
T Consensus 171 ~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~~s~~a~~~~~~~~~~ 250 (846)
T KOG2066|consen 171 NLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKRSSSEARSFRLPSLKK 250 (846)
T ss_pred cEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEecccccccccccCCccce
Confidence 9999999999999999998654443332 1 23677889999888885 56666664333322212333444432
Q ss_pred ceEE---EeCCeEEEEcC--CeeEEEEccCC---C---------------ceeEEEeeCC------------c-------
Q 001851 240 IAVI---IQKPYAIALLP--RRVEVRSLRVP---Y---------------ALIQTIVLQN------------V------- 277 (1004)
Q Consensus 240 ~~i~---~~~PYll~~~~--~~ieV~~l~~~---~---------------~lvQti~l~~------------~------- 277 (1004)
..+. -...|+-|+.+ ..+.+...... + ..++-+.... .
T Consensus 251 V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~~~~e~~s~~~~~r~~~~~peir~~~~~~~Ei~~Dal~~~~~e~~~~~D 330 (846)
T KOG2066|consen 251 VEIVSHFETSFYISGLAPLGDQLVVLGFDKDISEGEFTSARPSSRAKGNRPEIRIVSLNNDEICSDALIVRGFEELSIND 330 (846)
T ss_pred eeeEEEeeeeeeeeccccccceeEEEeeecccccccccccchhhhccCCCceEEeccccchhhhhhhhhhcchhhcCCcc
Confidence 1222 22446666655 33444332110 0 1111111111 0
Q ss_pred cccc---cCCCeEEEEeCCeEEEecccChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCC
Q 001851 278 RHLI---PSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGS 354 (1004)
Q Consensus 278 ~~l~---~~~~~v~vas~~~i~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~ 354 (1004)
-++. .....+|+.|++.|....+.+.++.|+||++.++|+||+.+++... +. ..+..+..+...|-.+|+..++
T Consensus 331 Y~L~~~~~~~~~yyIvspkDiV~a~~~~~~Dhi~Wll~~k~yeeAl~~~k~~~--~~-~~~~~i~kv~~~yI~HLl~~~~ 407 (846)
T KOG2066|consen 331 YHLGGHPKTEPLYYIVSPKDIVVAKERDQEDHIDWLLEKKKYEEALDAAKASI--GN-EERFVIKKVGKTYIDHLLFEGK 407 (846)
T ss_pred ccccCCCCCCceEEEecCCceEEEeecCcchhHHHHHHhhHHHHHHHHHHhcc--CC-ccccchHHHHHHHHHHHHhcch
Confidence 0111 2345799999999999999999999999999999999999998764 22 2223567888899999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHhCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhh
Q 001851 355 YEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSK 434 (1004)
Q Consensus 355 f~~A~~~f~~~~~dp~~vi~Lfp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~~~~~ 434 (1004)
|++|.......--+-...+.++-.-. .+ -+.+.++++.+| ..|+.+.+
T Consensus 408 y~~Aas~~p~m~gn~~~eWe~~V~~f-~e------~~~l~~Ia~~lP---------------t~~~rL~p---------- 455 (846)
T KOG2066|consen 408 YDEAASLCPKMLGNNAAEWELWVFKF-AE------LDQLTDIAPYLP---------------TGPPRLKP---------- 455 (846)
T ss_pred HHHHHhhhHHHhcchHHHHHHHHHHh-cc------ccccchhhccCC---------------CCCcccCc----------
Confidence 99999876542111111111100000 00 000111111111 01112211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhcccCCCcCCCccccccCCCCCCCccccchHHHHHHHHHHHHHHH
Q 001851 435 KMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQA 514 (1004)
Q Consensus 435 ~~~~~a~~~L~~yL~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~ 514 (1004)
.-.-..|+.||......+... +.-|-+ .+...+.+++
T Consensus 456 ---~vYemvLve~L~~~~~~F~e~---------i~~Wp~-------------------------~Lys~l~iis------ 492 (846)
T KOG2066|consen 456 ---LVYEMVLVEFLASDVKGFLEL---------IKEWPG-------------------------HLYSVLTIIS------ 492 (846)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHH---------HHhCCh-------------------------hhhhhhHHHh------
Confidence 113445667776544444321 111111 1111111111
Q ss_pred HHhcCChhhHHhhhcCCCcccHHHHHHHHHhc----CcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCCC
Q 001851 515 LLLTGQSSAALELLKGLNYCDVKICEEILQKK----NHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFN 590 (1004)
Q Consensus 515 yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~----~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~ 590 (1004)
..+..++++ .--+.||.||...++|.+|++++.++.+.+..
T Consensus 493 -----------------------a~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf------------ 537 (846)
T KOG2066|consen 493 -----------------------ATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF------------ 537 (846)
T ss_pred -----------------------hcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH------------
Confidence 111222111 11234999999999999999999987664431
Q ss_pred hHhHHHHhcccCCCCchhHHhhchhhhccCccchhccccc--CCCChHHHHHHHhhcCccchhhhHHHHHhcccCCCCcc
Q 001851 591 PESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGN 668 (1004)
Q Consensus 591 ~~~~~~yL~~L~~~~~~li~~~~~wll~~~p~~~i~if~~--~~l~~~~vl~~L~~~~~~l~~~YLE~li~~~~~~~~~~ 668 (1004)
+.+.++ .-.+.+.+-...+|..+-++++++|++ +.+||..|++.+... |.++..||..+..++ ......
T Consensus 538 -~lI~k~------nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~-P~~l~~YL~kl~~rd-~~~~~~ 608 (846)
T KOG2066|consen 538 -DLIKKH------NLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDN-PKLLYCYLHKLFKRD-HFMGSE 608 (846)
T ss_pred -HHHHHH------hhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcC-hHHHHHHHHHHhhcC-ccccch
Confidence 223322 223566666777888888999999987 469999999988854 999999999999865 356789
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCcccchHHHHHHHHHHhhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHH
Q 001851 669 LQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELAL 748 (1004)
Q Consensus 669 ~h~~L~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL 748 (1004)
+|++++.+|.+. .|++|+.||+.|.+|+++++++.|.+.++++|.++||||||++.+||
T Consensus 609 y~dk~I~LYAEy---------------------Drk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL 667 (846)
T KOG2066|consen 609 YHDKQIELYAEY---------------------DRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEAL 667 (846)
T ss_pred hhhHHHHHHHHH---------------------hHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHH
Confidence 999999999975 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHhcCCCCCcchhhhhhcccccCCCCCCCCCCcccceec
Q 001851 749 SLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKV 828 (1004)
Q Consensus 749 ~ilv~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1004)
.+++++|+|+++|++||..+. +++||..|+.++++.|
T Consensus 668 ~lII~el~die~AIefvKeq~-----------D~eLWe~LI~~~ldkP-------------------------------- 704 (846)
T KOG2066|consen 668 KLIINELRDIEKAIEFVKEQD-----------DSELWEDLINYSLDKP-------------------------------- 704 (846)
T ss_pred HHHHHHhhCHHHHHHHHHhcC-----------CHHHHHHHHHHhhcCc--------------------------------
Confidence 999999999999999999875 7899999998776543
Q ss_pred cCCccccchhcccccccccCCCCCCCCCCCCCCcccccccCCccccHHHHHHHHhhccCCCChhhhcccCCcccchhchH
Q 001851 829 KGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLL 908 (1004)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~~lP~~~~l~~l~ 908 (1004)
+.+..+|+ -+..+||..|+..||+++.|+.|+
T Consensus 705 -----------------------------------------------e~~~~ll~-i~~~~dpl~ii~kip~g~~IPnLr 736 (846)
T KOG2066|consen 705 -----------------------------------------------EFIKALLN-IGEHEDPLLIIRKIPDGLEIPNLR 736 (846)
T ss_pred -----------------------------------------------HHHHHHHH-hhhcccHHHHHhcCCCCCCCccHH
Confidence 33444444 445599999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccceEEECCCCcCCcCCCccCC-----cEEEEcCCCCeEEEe
Q 001851 909 PFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGT-----SVFAVYPNGKTIVHF 983 (1004)
Q Consensus 909 ~fL~~~l~~~~~~~r~~~i~~~l~~~~~~~~~~el~~~~~~~v~i~~~~~C~vC~k~l~~-----~~f~v~p~~~~v~H~ 983 (1004)
+-|.++++++..+....+.+..+..++...+..++.+.++++|.+..+.+|..|..++-. ..|+||-|| |++|.
T Consensus 737 dsl~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~~~~~~Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~-h~yhk 815 (846)
T KOG2066|consen 737 DSLVKILQDYNLQLELRQGCYDILKNDSKSLLNKFLKTARRGVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCG-HMYHK 815 (846)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeEeehhhhhhhcccccccCcccceeeEEEcc-chhhh
Confidence 999999999999999999999999999999999999999999999999999999999764 458889999 99999
Q ss_pred cccCCc
Q 001851 984 VCFRDS 989 (1004)
Q Consensus 984 ~C~~~~ 989 (1004)
.|...+
T Consensus 816 ~c~~~~ 821 (846)
T KOG2066|consen 816 ECLMME 821 (846)
T ss_pred cccccH
Confidence 999753
No 4
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=100.00 E-value=4.2e-33 Score=306.59 Aligned_cols=241 Identities=32% Similarity=0.547 Sum_probs=205.3
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc-eEE
Q 001851 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAF 99 (1004)
Q Consensus 21 ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~-v~~ 99 (1004)
|++.|+++|||||++| |+.|.+..... .. +...+.+|+||.++|+.++|++|+|+ +.+
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~---------------~~-----~i~~~~~I~ql~vl~~~~~llvLsd~~l~~ 60 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSK---------------PT-----RILKLSSITQLSVLPELNLLLVLSDGQLYV 60 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCcc---------------ce-----eEeecceEEEEEEecccCEEEEEcCCccEE
Confidence 8899999999999999 89998822111 11 11234569999999999999999996 999
Q ss_pred EeCCCCcccc---------------cccCCCCcEEEEe-c--CCCcEEEEEECCeEEEEEecCC-Cce-eEeeeeecCCC
Q 001851 100 HRLPNLETIA---------------VLTKAKGANVYSW-D--DRRGFLCFARQKRVCIFRHDGG-RGF-VEVKDFGVPDT 159 (1004)
Q Consensus 100 ~~L~~l~~~~---------------~i~~~kg~~~f~~-~--~~~~~l~V~~kkki~l~~~~~~-~~f-~~~kEi~l~d~ 159 (1004)
|+|+++.+.. .+...|||++|+. . .....+||+.||+|.+|+|..+ ..| ...||+.+|+.
T Consensus 61 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~ 140 (275)
T PF00780_consen 61 YDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP 140 (275)
T ss_pred EEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC
Confidence 9998875544 5678899999992 2 2234799999999999999864 468 88999999999
Q ss_pred ceEEEecCCeEEEEEcCceEEEEcCCCCcccccCCCCC----------C-CCEEEEccCCeEEEEeCCeEEEEcCCCCcc
Q 001851 160 VKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRI----------G-PPLVVSLLSGELLLGKENIGVFVDQNGKLL 228 (1004)
Q Consensus 160 ~~~l~~~~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~----------~-~p~i~~~~~~E~Ll~~~~~gvfv~~~G~~~ 228 (1004)
|.+|+|.++.||||++++|.++|+.++...++++.+.. . .+.+..++++|||||+++.|+|+|.+|+++
T Consensus 141 ~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~ 220 (275)
T PF00780_consen 141 PSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPS 220 (275)
T ss_pred cEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcC
Confidence 99999999999999999999999999999988865421 2 344667788999999999999999999999
Q ss_pred cCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEeeCCccccccC
Q 001851 229 QADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPS 283 (1004)
Q Consensus 229 ~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l~~~~~l~~~ 283 (1004)
++++|+|+..|.++++.+|||+++++++||||++. ++.++|+|.+++.+.+.++
T Consensus 221 r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~-~~~lvQ~i~~~~~~~l~~~ 274 (275)
T PF00780_consen 221 RKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLE-TGELVQTIPLPNIRLLCSG 274 (275)
T ss_pred cccEEEcCCchhEEEEECCEEEEECCCEEEEEECc-CCcEEEEEECCCEEEEecC
Confidence 88999999999999999999999999999999997 5999999999999887653
No 5
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-26 Score=264.75 Aligned_cols=537 Identities=17% Similarity=0.208 Sum_probs=381.4
Q ss_pred CCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEeeCC---ccc--ccc--CCCeEEEEeCCeEEEecccChHHHHH-
Q 001851 237 EAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQN---VRH--LIP--SSNAVVVALENSIFGLFPVPLGAQIV- 308 (1004)
Q Consensus 237 ~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l~~---~~~--l~~--~~~~v~vas~~~i~~l~~~~~~~qi~- 308 (1004)
..|.+++...-+++-+..+.+.+.+..+ +..|-.-++.. +.. +++ .-+.+++-|.+.++.+...+-..-|.
T Consensus 288 ~~p~~ivLT~yH~LLl~~d~V~avs~Ln-~~vI~~~~~n~s~~g~~LGlv~D~va~~~w~YTq~~vf~~~vndE~R~vWk 366 (911)
T KOG2034|consen 288 EPPKAIVLTEFHFLLLYADRVLAVSLLN-GEVIYRDQFNESELGGILGLVSDSVAETFWLYTQTSVFEYGVNDEARDVWK 366 (911)
T ss_pred CCcceehHHHHHHHHHhcCceeeeeccC-ccccchhccCchhcccceeeeeccccceEEEEEeceeeeeeeccchHHHHH
Confidence 4677888887788878888999998875 54443333332 122 222 23568888999999998887655544
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCCCCCCCCCCC
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVP 388 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~~~~~~~~~~ 388 (1004)
-++.+|+|+.|++.++.-+ ..+..+..+.|.++|..++|..|++.+.+......+|.-.|-..- +
T Consensus 367 ~yLd~g~y~kAL~~ar~~p--------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~--~----- 431 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIARTRP--------DALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEIN--Q----- 431 (911)
T ss_pred HHHhcchHHHHHHhccCCH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcC--C-----
Confidence 4689999999999997532 245678888999999999999999999988777778877775551 1
Q ss_pred Cccccccc-CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCchhh
Q 001851 389 EPERLLDI-SSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEV 467 (1004)
Q Consensus 389 ~~~~~~~~-~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~~~~~~~~~~a~~~L~~yL~~~R~~~~~~~~~~~~~~~ 467 (1004)
++.+... ...+.. ++..| .-...+|+.+|.+.--..+....+ +
T Consensus 432 -~~~L~~~L~KKL~~-------------------lt~~d-----------k~q~~~Lv~WLlel~L~~Ln~l~~--~--- 475 (911)
T KOG2034|consen 432 -ERALRTFLDKKLDR-------------------LTPED-----------KTQRDALVTWLLELYLEQLNDLDS--T--- 475 (911)
T ss_pred -HHHHHHHHHHHHhh-------------------CChHH-----------HHHHHHHHHHHHHHHHHHHhcccc--c---
Confidence 1111000 000000 00000 123456777776653333221110 0
Q ss_pred hhhcccCCCcCCCccccccCCCCCCCccccchHHHHHHHHHHHHHHHHHhcCChhhHHhhhcC-CCcccHHHHHHHHHhc
Q 001851 468 VLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKG-LNYCDVKICEEILQKK 546 (1004)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~yl~~~~~~~l~~ll~~-~n~c~~~~~~~~L~~~ 546 (1004)
........|+.. ++. ...+..++.. .-.-+-+.|.+++.++
T Consensus 476 --------------------------------de~~~en~~~~~-~~~-----~re~~~~~~~~~~~~nretv~~l~~~~ 517 (911)
T KOG2034|consen 476 --------------------------------DEEALENWRLEY-DEV-----QREFSKFLVLHKDELNRETVYQLLASH 517 (911)
T ss_pred --------------------------------ChhHHHHHHHHH-HHH-----HHHHHHHHHhhHHhhhHHHHHHHHHHc
Confidence 011111122221 111 0112222221 1234778999999999
Q ss_pred CcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCCChHhHHHHhcccCCCCchhHHhhchhhhccCccchhc
Q 001851 547 NHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIE 626 (1004)
Q Consensus 547 ~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~p~~~i~ 626 (1004)
++.+.|+.+....++++..+..|.+... .+.+.+.|.+ ..+.+|.++|++-|+.+.|..++.
T Consensus 518 ~~~e~ll~fA~l~~d~~~vv~~~~q~e~----------------yeeaLevL~~--~~~~el~yk~ap~Li~~~p~~tV~ 579 (911)
T KOG2034|consen 518 GRQEELLQFANLIKDYEFVVSYWIQQEN----------------YEEALEVLLN--QRNPELFYKYAPELITHSPKETVS 579 (911)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHh--ccchhhHHHhhhHHHhcCcHHHHH
Confidence 9999999999999999999999987432 3446666653 266799999999999999999999
Q ss_pred cccc--CCCChHHHHHHHhhc-------CccchhhhHHHHHhcccCCCCcchHHHHHHHHHHHHHHhhhhhhhhcccCcc
Q 001851 627 LFLS--GNIPADLVNSYLKQY-------SPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEK 697 (1004)
Q Consensus 627 if~~--~~l~~~~vl~~L~~~-------~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~~~~~~~~~~~~~~~~~~ 697 (1004)
.++. +..|+..+...|.-+ ....+++|||+.+... +..++.+||.|..+|+..
T Consensus 580 ~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l-~~~~~~ihn~ll~lya~~----------------- 641 (911)
T KOG2034|consen 580 AWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVL-GMTNPAIHNSLLHLYAKH----------------- 641 (911)
T ss_pred HHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhc-cCcCHHHHHHHHHHhhcC-----------------
Confidence 9987 336666555444332 2346899999998743 567899999999999864
Q ss_pred cchHHHHHHHHHH------hhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001851 698 AYSPTRKKLLSAL------ESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYES 771 (1004)
Q Consensus 698 ~~~~~r~kLl~fL------~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~ 771 (1004)
.|..|+-+| ++...||+..+++.|-...--...++||..|+.|++|.++.+ + .|.+.|+.-+...++.
T Consensus 642 ----~~~~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL-~-~d~dlak~~A~~~ee~ 715 (911)
T KOG2034|consen 642 ----ERDDLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLAL-Q-FDIDLAKVIANDPEED 715 (911)
T ss_pred ----CccchHHHHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHh-h-cCHHHHhhhhcChhhH
Confidence 133444333 345789999999999877777789999999999999999999 3 4699999988877654
Q ss_pred ccCCCCCCCCCChHHHHHHHhcCCCCCcchhhhhhcccccCCCCCCCCCCcccceeccCCccccchhcccccccccCCCC
Q 001851 772 IAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPS 851 (1004)
Q Consensus 772 ~~~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (1004)
.. .+..+|....+.++..
T Consensus 716 e~------lrKkLWLkIAkh~v~~-------------------------------------------------------- 733 (911)
T KOG2034|consen 716 ED------LRKKLWLKIAKHVVKQ-------------------------------------------------------- 733 (911)
T ss_pred HH------HHHHHHHHHHHHHHHh--------------------------------------------------------
Confidence 21 2457887766654421
Q ss_pred CCCCCCCCCCcccccccCCccccHHHHHHHHhhccCCCChhhhcccCCcccchhchHHHHHHHHHhhHHHHHHHHHHHHH
Q 001851 852 STDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSL 931 (1004)
Q Consensus 852 ~~~s~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~~lP~~~~l~~l~~fL~~~l~~~~~~~r~~~i~~~l 931 (1004)
+.++..++.+|.. .+.+-..++|+.+|+...|..+++-++..++++..+.++.+..-+=
T Consensus 734 --------------------~~~ikk~i~~Lk~-~~lLkiedlLpffpdf~~id~~keaic~~L~~~n~rieel~~em~e 792 (911)
T KOG2034|consen 734 --------------------ENDIKKAIRFLKE-NELLTIEDLLPFFPDFTKIDNLKEAICDFLEDYNKRIEELQEEMIE 792 (911)
T ss_pred --------------------hccHHHHHHHhcc-CcccchhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1126788999987 7888999999999999999999999999999999877766655554
Q ss_pred HHHHHHHHHHHHHccccceEEECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccCCc
Q 001851 932 RQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDS 989 (1004)
Q Consensus 932 ~~~~~~~~~~el~~~~~~~v~i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~ 989 (1004)
++....+...++.+.+.|+.+|.+...|.+|+++|...+|+||||| |.+|..|+...
T Consensus 793 at~~a~~I~~~~~~l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~Cg-H~FH~~Cl~~~ 849 (911)
T KOG2034|consen 793 ATELADEIRTEISKLRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCG-HCFHRDCLIRH 849 (911)
T ss_pred HHHHHHHHHhHHHHhhcceEEecCccchHHhcchhhcCcceeeecc-chHHHHHHHHH
Confidence 4555557889999999999999999999999999999999999999 99999998643
No 6
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=99.93 E-value=1.4e-24 Score=239.40 Aligned_cols=245 Identities=22% Similarity=0.350 Sum_probs=188.9
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c--eEEEeCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S--IAFHRLP 103 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~--v~~~~L~ 103 (1004)
++|++||++|....+ +.+... .+. +.+++++|+||.++++.++|++|+| . +.+|+|.
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~----------------~~~---kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPG----------------TLE---KLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCC----------------CeE---EecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 589999999965544 443211 111 3367889999999999999999999 3 9999997
Q ss_pred CCcc----------------cccccCCCCcEEEEecCCC--cEEEEEECCeEEEEEecCC-CceeEeeee----ecCCCc
Q 001851 104 NLET----------------IAVLTKAKGANVYSWDDRR--GFLCFARQKRVCIFRHDGG-RGFVEVKDF----GVPDTV 160 (1004)
Q Consensus 104 ~l~~----------------~~~i~~~kg~~~f~~~~~~--~~l~V~~kkki~l~~~~~~-~~f~~~kEi----~l~d~~ 160 (1004)
.+.. ...+.++|||+.|++...+ ..+|+|.+++|.+|+|... ..|...|++ .+++.+
T Consensus 74 ~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~ 153 (302)
T smart00036 74 ALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVP 153 (302)
T ss_pred HhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCcc
Confidence 6653 2356889999999987655 4588999999999999642 246666663 234555
Q ss_pred eEEEec-----CCeEEEEEcC-ceEEEEcCC--CCcccc-cC--C-CCC-CCCEEEEccCCeEEEEeCCeEEEEcCCC-C
Q 001851 161 KSMSWC-----GENICIAIRK-GYMILNATN--GALSEV-FP--S-GRI-GPPLVVSLLSGELLLGKENIGVFVDQNG-K 226 (1004)
Q Consensus 161 ~~l~~~-----~~~i~v~~~~-~y~lidl~~--~~~~~L-~~--~-~~~-~~p~i~~~~~~E~Ll~~~~~gvfv~~~G-~ 226 (1004)
....|. ++.||||+++ +|.++++.+ ....+. ++ . ... ..+.+..++++|||||+++.|+|||.+| +
T Consensus 154 ~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn~~G~~ 233 (302)
T smart00036 154 VFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVNLYGKR 233 (302)
T ss_pred ceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEEeCCCCc
Confidence 555554 5699999997 999999965 322221 00 1 111 2344677889999999999999999999 7
Q ss_pred cccCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEe---eCCccccccCCCeEEEEeC
Q 001851 227 LLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIV---LQNVRHLIPSSNAVVVALE 292 (1004)
Q Consensus 227 ~~~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~---l~~~~~l~~~~~~v~vas~ 292 (1004)
.++...|.|++.|.++++.+|||+++.+++||||++. ++.++|+|. .+..++++.+++.++++|.
T Consensus 234 ~~r~~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~-~~~l~q~i~~~~~~~~r~L~~~~~~I~~~s~ 301 (302)
T smart00036 234 RSRNPILHWEFMPESFAYHSPYLLAFHDNGIEIRSIK-TGELLQELADRETRKIRLLGSSDRKILLSSS 301 (302)
T ss_pred cccceEEEcCCcccEEEEECCEEEEEcCCcEEEEECC-CCceEEEEecCCCcceEEEecCCCeEEEEec
Confidence 7777889999999999999999999999999999997 689999998 5777888877788888764
No 7
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=99.89 E-value=2.5e-23 Score=194.76 Aligned_cols=108 Identities=43% Similarity=0.689 Sum_probs=105.5
Q ss_pred HHHHhhccCCCChhhhcccCCcccchhchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccceEEECCCCc
Q 001851 879 LDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSM 958 (1004)
Q Consensus 879 l~lL~~~~~~ld~~~vL~~lP~~~~l~~l~~fL~~~l~~~~~~~r~~~i~~~l~~~~~~~~~~el~~~~~~~v~i~~~~~ 958 (1004)
+++|+++++.|||.+||++||++|||+.+++||.++++.+.+++++.++.+++.+++..+++.++.+.++++|.|++++.
T Consensus 1 l~lL~~~~~~ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~v~i~~~~~ 80 (109)
T PF10367_consen 1 LELLNEHGSRLDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELVKLRSRSVVITESTK 80 (109)
T ss_pred ChhHHhccccCCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCceEEECCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCccCCcEEEEcCCCCeEEEecccC
Q 001851 959 CSLCSKKIGTSVFAVYPNGKTIVHFVCFR 987 (1004)
Q Consensus 959 C~vC~k~l~~~~f~v~p~~~~v~H~~C~~ 987 (1004)
|++|+|+||+++|+||||| |+||++|.+
T Consensus 81 C~vC~k~l~~~~f~~~p~~-~v~H~~C~~ 108 (109)
T PF10367_consen 81 CSVCGKPLGNSVFVVFPCG-HVVHYSCIK 108 (109)
T ss_pred ccCcCCcCCCceEEEeCCC-eEEeccccc
Confidence 9999999999999999999 999999985
No 8
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=99.84 E-value=3e-21 Score=176.80 Aligned_cols=107 Identities=37% Similarity=0.586 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccc
Q 001851 507 LDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHT 586 (1004)
Q Consensus 507 vDT~Ll~~yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~ 586 (1004)
|||+||+||+.+ ++..+.+|+|.+|+|++++|++.|+++++|.+|+.||..+|+|++||++|+++++++..+... .
T Consensus 1 VDTaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~---~ 76 (108)
T PF10366_consen 1 VDTALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEED---P 76 (108)
T ss_pred CcHHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhccccccccc---c
Confidence 699999999999 577899999999999999999999999999999999999999999999999999853221111 1
Q ss_pred cCCChHh-HHHHhcccCCCCchhHHhhchhhh
Q 001851 587 QKFNPES-IIEYLKPLCGTDPMLVLEFSMLVL 617 (1004)
Q Consensus 587 ~~~~~~~-~~~yL~~L~~~~~~li~~~~~wll 617 (1004)
...++.. +++||++|+.++.++|++|+.|++
T Consensus 77 ~~~~~~~~iv~yL~~L~~~~~dLI~~~s~WvL 108 (108)
T PF10366_consen 77 FLSGVKETIVQYLQKLGNEDLDLIFEYSDWVL 108 (108)
T ss_pred cccCchhHHHHHHHhCChhhhHHHHHhccccC
Confidence 1223333 599999999999999999999986
No 9
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-19 Score=204.06 Aligned_cols=261 Identities=21% Similarity=0.338 Sum_probs=188.1
Q ss_pred CcccccccccCC---CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCce
Q 001851 4 NAFDSLELISNC---SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPI 78 (1004)
Q Consensus 4 ~~f~~~~l~~~~---~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I 78 (1004)
.-|++.++.+.+ .+++.|+-.++ +.|++||+.| +|+.....+.. .+.+.+.......|
T Consensus 842 ~~ft~~~~~~~Ff~~~nkvn~v~~~dsgr~ll~~T~kg-lYis~~k~~~~----------------~f~kpI~~l~~~nI 904 (1175)
T COG5422 842 LWFTSFPICDQFFSTTNKVNPVPLYDSGRKLLTGTNKG-LYISNRKDNVN----------------RFNKPIDLLQEPNI 904 (1175)
T ss_pred hheeeccchhheeeccceecceeeccCCCeEEEeccce-eEEEEeccCcc----------------cccccHHHHhcCCc
Confidence 346777777766 47899988885 7999999999 56665554322 11111222346799
Q ss_pred eEEEEecccCceeeeeCc-eEEEeCCCCcccc------cccCCCCcEEEEecCCCcE-EEEEECCe-----EEEEEe---
Q 001851 79 LSMEVLASRQLLLSLSES-IAFHRLPNLETIA------VLTKAKGANVYSWDDRRGF-LCFARQKR-----VCIFRH--- 142 (1004)
Q Consensus 79 ~qI~~l~~~~~ll~l~d~-v~~~~L~~l~~~~------~i~~~kg~~~f~~~~~~~~-l~V~~kkk-----i~l~~~--- 142 (1004)
+||.++++.++++.++|. +.-+.|.-.+... .-....-+.+|..+...|. +++++|.. +.+|+.
T Consensus 905 SQi~vieey~lmlllsdk~LY~~pl~vid~~~~~~~kksr~~~~hvsffk~G~C~gk~lv~~~kS~~~~~~l~v~e~~~~ 984 (1175)
T COG5422 905 SQIIVIEEYKLMLLLSDKKLYSCPLDVIDASTEENVKKSRIVNGHVSFFKQGFCNGKRLVCAVKSSSLSATLAVIEAPLA 984 (1175)
T ss_pred ceeeehhhhhHHHHhhcCeeecCccchhhhhhhhhhhhhhheeceeEEEeecccccceEEEeeeeheeeeeeeeecchhh
Confidence 999999999999999995 4444443221111 1112334566766666554 33344432 334441
Q ss_pred ---c-CCC--c-e--eEeeeeecCCCceEEEecCCeEEEEEcCceEEEEcCCCCcccccCCC----------CCCCCEEE
Q 001851 143 ---D-GGR--G-F--VEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSG----------RIGPPLVV 203 (1004)
Q Consensus 143 ---~-~~~--~-f--~~~kEi~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~~~~~L~~~~----------~~~~p~i~ 203 (1004)
. .+. . + ...+|+.+|..|.++.|+.+.||||++++|.|+++.+-....|+.+. +..+|+..
T Consensus 985 ~~~~~s~n~Kk~lt~~~~~el~v~~E~~sv~Flk~KlcIgC~kgFeIvsle~l~~esLL~paD~s~~~~~~ken~kpiai 1064 (1175)
T COG5422 985 LKKNKSGNLKKALTIELSTELYVPSEPLSVHFLKNKLCIGCKKGFEIVSLENLRTESLLNPADTSPLFFEKKENTKPIAI 1064 (1175)
T ss_pred hhcccCcchhhhhhhhheEEEEecCceeeeeeeccceEEeecCCceEeechhhhhHhhcCcccccHHHHhhcccCceEEE
Confidence 1 111 1 1 12578899999999999999999999999999999998777776542 23467654
Q ss_pred EccCCeEEEEeCCeEEEEcCCCCccc-CcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEeeCCcccccc
Q 001851 204 SLLSGELLLGKENIGVFVDQNGKLLQ-ADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIP 282 (1004)
Q Consensus 204 ~~~~~E~Ll~~~~~gvfv~~~G~~~~-~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l~~~~~l~~ 282 (1004)
-.-.+|||+|++++|+|||.+|+..+ ...+.|++.|..++.++|||+++.++.|||+++. ++.+|+++--.+.+++..
T Consensus 1065 ~rv~~eFLLCys~faFfVN~~Gwrkrts~i~~Weg~Pq~FalsypYIlaf~~~fIeIr~ie-TgeLI~~ilg~~IRlLt~ 1143 (1175)
T COG5422 1065 FRVSGEFLLCYSEFAFFVNDQGWRKRTSWIFHWEGEPQEFALSYPYILAFEPNFIEIRHIE-TGELIRCILGHNIRLLTD 1143 (1175)
T ss_pred EeeCCcEEEEecceeEEEcCcCceecccEEEEEcCccceeeeecceEEEecCceEEEEecc-cceeeeeeccCceEEeec
Confidence 44455999999999999999998764 3578999999999999999999999999999996 799999998777777665
No 10
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.53 E-value=4.8e-14 Score=138.22 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=116.5
Q ss_pred CCCChHHHHHHHhhc-CccchhhhHHHHHhcccCCCCcchHHHHHHHHHHHHHHhhhhhhhhcccCcccchHHHHHHHHH
Q 001851 631 GNIPADLVNSYLKQY-SPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSA 709 (1004)
Q Consensus 631 ~~l~~~~vl~~L~~~-~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~r~kLl~f 709 (1004)
+.++++.|++.+... .+.....|||+++..+ ..++.+||.|+.+|++. .+.+++.|
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~---------------------~~~~ll~~ 62 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY---------------------DPQKEIER 62 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH---------------------CHHHHHHH
Confidence 468899999988743 5789999999999753 36889999999999864 37899999
Q ss_pred Hh-hcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhhccCCCCCCCCCChHHHH
Q 001851 710 LE-SISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTL 788 (1004)
Q Consensus 710 L~-~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~L 788 (1004)
|+ .++.||++.+++.|...++++|.++||+|+|+|++|+++++..++|++.|.+||.+.. ++++|..+
T Consensus 63 l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~-----------~~~lw~~~ 131 (140)
T smart00299 63 LDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQN-----------NPELWAEV 131 (140)
T ss_pred HHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCC-----------CHHHHHHH
Confidence 99 8999999999999999999999999999999999999999999999999999999853 57899999
Q ss_pred HHHhcCC
Q 001851 789 LQIYLNP 795 (1004)
Q Consensus 789 l~~~l~~ 795 (1004)
++.++..
T Consensus 132 ~~~~l~~ 138 (140)
T smart00299 132 LKALLDK 138 (140)
T ss_pred HHHHHcc
Confidence 9988754
No 11
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-12 Score=157.42 Aligned_cols=206 Identities=26% Similarity=0.400 Sum_probs=148.0
Q ss_pred CCceeEEEEecccCceeeeeCc-eEEEeCCCC-----ccc--ccc--cCCCCcEEEEecCCCc-EEEEEE-----CCeEE
Q 001851 75 KKPILSMEVLASRQLLLSLSES-IAFHRLPNL-----ETI--AVL--TKAKGANVYSWDDRRG-FLCFAR-----QKRVC 138 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d~-v~~~~L~~l-----~~~--~~i--~~~kg~~~f~~~~~~~-~l~V~~-----kkki~ 138 (1004)
...|+||.+.++.++++++.|. +..+.+... ... ... ...+.+.+|..+...| .++++. ...+.
T Consensus 752 ~~~i~q~~v~ee~~~l~~l~dk~Ly~~~l~~~~ae~~~~~~~~~~~~vl~~~v~~fk~g~~~gk~~v~~~~~~~l~~~v~ 831 (1029)
T KOG4305|consen 752 KNNISQIEVNEESKLLLLLIDKKLYYCPLSMIDAEGNIASKTSREETVLRRHVDFFKEGDCKGKILVCAVKSSVLGNTVK 831 (1029)
T ss_pred ccchhhhhhhhhccceeeehhhHHhhCCcceeeeccccccccccccchhhhhhhhhhcccccCceEEEEEeeccCCceEE
Confidence 4499999999999999999983 444443211 000 000 0112344555555555 333332 45677
Q ss_pred EEEe----cC---CC---ce--eEeeeeecCCCceEEEecCCeEEEEEcCceEEEEcCCCCcccccCCC----------C
Q 001851 139 IFRH----DG---GR---GF--VEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSG----------R 196 (1004)
Q Consensus 139 l~~~----~~---~~---~f--~~~kEi~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~~~~~L~~~~----------~ 196 (1004)
+|+. +. +. .| +.+.|+.++..+.++.|..+.+|||+.++|.|+++.......++++. +
T Consensus 832 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~s~~flk~k~~v~~~k~f~i~sl~~~~~~~l~~~~~~~~~~~~~~~ 911 (1029)
T KOG4305|consen 832 IFEFLLVISNPASGNELKKFLKVGLTDFFVDSEPVSVSFLKNKLCVGCKKGFEIVSLSNKTAESLLNPADNSPLFFEKRE 911 (1029)
T ss_pred EEechhhhcCCcchhhhhhhhhccchhccccccchhHhHhccceeeeecCCCceeccchhhhhccCCCccchHHHHhhhc
Confidence 7763 11 11 11 22457788889999999999999999999999998876555555432 2
Q ss_pred CCCCEEE-EccCCeEEEEeCCeEEEEcCCCCcccC-cceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEee
Q 001851 197 IGPPLVV-SLLSGELLLGKENIGVFVDQNGKLLQA-DRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVL 274 (1004)
Q Consensus 197 ~~~p~i~-~~~~~E~Ll~~~~~gvfv~~~G~~~~~-~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l 274 (1004)
..+|+.. ++.+ |||+|++..|+|||.+|.+++. ..|.|.+.|..++.++|||+++.++.|||+++. ++.++|.+.-
T Consensus 912 ~~kp~~ifri~~-~Fllcy~~~~f~vn~~G~~~~~~~~~~w~g~p~~~a~~~~yiia~~~~fIeI~~~~-t~eli~~i~~ 989 (1029)
T KOG4305|consen 912 NTKPVAIFRISG-EFLLCYDEFAFFVNDQGWRSRTSWIFLWEGEPQEFALSYPYIIAFGDNFIEIRDLE-TGELIQIILG 989 (1029)
T ss_pred cCceeEEEEecC-eEEEEecceEEEEcCCcceecccEEEEEcCccceeeeecceEEEecCceEEEEecc-cceeeEEeec
Confidence 3467644 4555 9999999999999999988853 578999999999999999999999999999997 6999998887
Q ss_pred CCcccccc
Q 001851 275 QNVRHLIP 282 (1004)
Q Consensus 275 ~~~~~l~~ 282 (1004)
.+.+.+..
T Consensus 990 ~~Ir~~~~ 997 (1029)
T KOG4305|consen 990 QNIRLLTS 997 (1029)
T ss_pred cceeEeec
Confidence 77776553
No 12
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.29 E-value=8.3e-14 Score=137.11 Aligned_cols=132 Identities=26% Similarity=0.403 Sum_probs=111.9
Q ss_pred CCCChHHHHHHHhh-cCccchhhhHHHHHhcccCCCCcchHHHHHHHHHHHHHHhhhhhhhhcccCcccchHHH-HHHHH
Q 001851 631 GNIPADLVNSYLKQ-YSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTR-KKLLS 708 (1004)
Q Consensus 631 ~~l~~~~vl~~L~~-~~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~r-~kLl~ 708 (1004)
++.++..|+..+.+ ..+.....|||.++..+ +..++.+||.|+.+|++. .+ ++|+.
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~---------------------~~~~~l~~ 63 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKY---------------------DPYEKLLE 63 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCT---------------------TTCCHHHH
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhc---------------------CCchHHHH
Confidence 44666777776655 45889999999999643 446799999999999964 23 79999
Q ss_pred HHhhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhhccCCCCCCCCCChHHHH
Q 001851 709 ALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTL 788 (1004)
Q Consensus 709 fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~L 788 (1004)
||++++.||++.+++.|...++++|.++||+|+|+|++|+++ +++++|++.|.+||.+.. ++++|..+
T Consensus 64 ~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~e~~~~~~-----------~~~l~~~l 131 (143)
T PF00637_consen 64 FLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAIEYAKKVD-----------DPELWEQL 131 (143)
T ss_dssp TTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCTTTGGGCS-----------SSHHHHHH
T ss_pred HcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHHHHHHhcC-----------cHHHHHHH
Confidence 999999999999999999999999999999999999999998 889999999999999864 57999999
Q ss_pred HHHhcCCC
Q 001851 789 LQIYLNPR 796 (1004)
Q Consensus 789 l~~~l~~~ 796 (1004)
++.+++..
T Consensus 132 ~~~~l~~~ 139 (143)
T PF00637_consen 132 LKYCLDSK 139 (143)
T ss_dssp HHHHCTST
T ss_pred HHHHHhcC
Confidence 99998654
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.39 E-value=0.00032 Score=75.52 Aligned_cols=233 Identities=17% Similarity=0.166 Sum_probs=143.8
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
+..|+|++... +.|++|+.+|.+.+|++..... ..... .+..+|..+...+..+.+++.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~------------------~~~~~-~~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL------------------LRTLK-GHTGPVRDVAASADGTYLASG 69 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc------------------EEEEe-cCCcceeEEEECCCCCEEEEE
Confidence 46899988876 6899999999999999764321 11111 235688899999988788777
Q ss_pred eC-c-eEEEeCCCCcccccccC-CCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeee-cCCCceEEEecC-
Q 001851 94 SE-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWCG- 167 (1004)
Q Consensus 94 ~d-~-v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l~~~~- 167 (1004)
+. + +.+|++.+.+....+.. ...+.+++++++...++++. .+.+.+|....++ ....+. .++.+.+++|..
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK---CLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE---EEEEeccCCCcEEEEEEcCc
Confidence 74 5 99999876444433322 23577778877645566665 7888888876332 223332 345788999985
Q ss_pred -CeEEEEE-cCceEEEEcCCCCcccccCCCCCCCCEEEEccCC-eEEEEe-CCeEEEEcCC-CCcccCcce-eecCCCce
Q 001851 168 -ENICIAI-RKGYMILNATNGALSEVFPSGRIGPPLVVSLLSG-ELLLGK-ENIGVFVDQN-GKLLQADRI-CWSEAPIA 241 (1004)
Q Consensus 168 -~~i~v~~-~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~-E~Ll~~-~~~gvfv~~~-G~~~~~~~i-~w~~~P~~ 241 (1004)
..++.+. .+...++|+.++.....+.........+...+++ .++++. ++...++|.. |.+. ..+ .....+..
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~ 224 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL--GTLRGHENGVNS 224 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee--cchhhcCCceEE
Confidence 4666666 5678889998776554444222112234445555 444544 4444555653 4433 122 12223345
Q ss_pred EEEeC--CeEEEEc-CCeeEEEEccCCCceeEEEe
Q 001851 242 VIIQK--PYAIALL-PRRVEVRSLRVPYALIQTIV 273 (1004)
Q Consensus 242 i~~~~--PYll~~~-~~~ieV~~l~~~~~lvQti~ 273 (1004)
+.+.. .++++.. .+.+.++++. .+..++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~-~~~~~~~~~ 258 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLR-TGECVQTLS 258 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcC-CceeEEEcc
Confidence 55543 3555555 5789999985 466666665
No 14
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00019 Score=85.48 Aligned_cols=388 Identities=16% Similarity=0.224 Sum_probs=236.5
Q ss_pred EEEecccChHHHHHHHHhcCCHHHHHHHHhhCCCchhh----------hhhh-------hhHHHHHHHHHHHHcCCCHHH
Q 001851 295 IFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDAS----------LRAA-------KEGSIHIRFAHYLFDTGSYEE 357 (1004)
Q Consensus 295 i~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~----------~~~~-------~~~~i~~~~a~~lf~~~~f~~ 357 (1004)
|-+|.--+..+-.+.-++.+.||||+.+.+.+.-..+. ++++ ..-.+-.+.|-..+..+.-.+
T Consensus 1043 I~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1043 INRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHH
Confidence 55566666666666778999999999999876311110 1110 001222334555566677778
Q ss_pred HHHHHHhcCCCHH---HHHHhCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhh
Q 001851 358 AMEHFLASQVDIT---YALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSK 434 (1004)
Q Consensus 358 A~~~f~~~~~dp~---~vi~Lfp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~~~~~ 434 (1004)
|++-|++++ ||. +||..- +
T Consensus 1123 AieSyikad-Dps~y~eVi~~a--------------------------------------------------------~- 1144 (1666)
T KOG0985|consen 1123 AIESYIKAD-DPSNYLEVIDVA--------------------------------------------------------S- 1144 (1666)
T ss_pred HHHHHHhcC-CcHHHHHHHHHH--------------------------------------------------------H-
Confidence 888777763 221 111110 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhcccCCCcCCCccccccCCCCCCCccccchHHHHHHHHHHHHHHH
Q 001851 435 KMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQA 514 (1004)
Q Consensus 435 ~~~~~a~~~L~~yL~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~ 514 (1004)
+ -...+.|++||.-.|++... ..|||.|+-.
T Consensus 1145 ~--~~~~edLv~yL~MaRkk~~E-----------------------------------------------~~id~eLi~A 1175 (1666)
T KOG0985|consen 1145 R--TGKYEDLVKYLLMARKKVRE-----------------------------------------------PYIDSELIFA 1175 (1666)
T ss_pred h--cCcHHHHHHHHHHHHHhhcC-----------------------------------------------ccchHHHHHH
Confidence 0 02477899999999887521 1389999999
Q ss_pred HHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCCChHhH
Q 001851 515 LLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESI 594 (1004)
Q Consensus 515 yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 594 (1004)
|+++++-.++.+|+.+||.-++..+=+.|-+.++|++.-.+|..-.++.+---.|..|++-. -+
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ----------------~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ----------------GA 1239 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH----------------HH
Confidence 99999988999999999999999999999999999999999999999888777777665321 12
Q ss_pred HHHhcccCCCCchhHHhhchhhhcc-----Cccchhccccc-CCCChHHHHHHHhhcCccchhhhHHHHHhccc---C--
Q 001851 595 IEYLKPLCGTDPMLVLEFSMLVLES-----CPTQTIELFLS-GNIPADLVNSYLKQYSPSMQGRYLELMLAMNE---N-- 663 (1004)
Q Consensus 595 ~~yL~~L~~~~~~li~~~~~wll~~-----~p~~~i~if~~-~~l~~~~vl~~L~~~~~~l~~~YLE~li~~~~---~-- 663 (1004)
++--++. +....+.+-+.-.++. ..--|+.|.+. +.+ ++++.+-+. .-|.|.+|..-+ +
T Consensus 1240 VD~aRKA--ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeL--eeli~~Yq~------rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1240 VDAARKA--NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADEL--EELIEYYQD------RGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHhhhc--cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhH--HHHHHHHHh------cCcHHHHHHHHHhhhchh
Confidence 2221211 1111111111111110 11124444432 111 223333322 235555553210 1
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhcccCcccchHHHHHHHHHHhh-cCCCChHHHhccCCCCchhHHHHHHHhccc
Q 001851 664 SISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMN 742 (1004)
Q Consensus 664 ~~~~~~h~~L~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg 742 (1004)
...-.+.++|+.+|... -++|++..|+- ++..+..++++.|..--+|.|.++||-+-.
T Consensus 1310 RAHMgmfTELaiLYsky---------------------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY---------------------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred HHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 01224567899888754 26788888875 788999999999988889999999999999
Q ss_pred cHHHHHHHHHHH-hCCHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHhcCCCCCcchhhhhhcccccCCCCCCCCCC
Q 001851 743 QHELALSLYVHK-LCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAG 821 (1004)
Q Consensus 743 ~h~~AL~ilv~~-L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1004)
.++-|.-.++.. -.+++. .+-+++--.. ..-++|...++.|++--
T Consensus 1369 eyDNAa~tmm~h~teaw~~--~~FKdii~kV-------aNvElyYkAi~FYl~~~------------------------- 1414 (1666)
T KOG0985|consen 1369 EYDNAALTMMEHPTEAWDH--GQFKDIITKV-------ANVELYYKAIQFYLDFH------------------------- 1414 (1666)
T ss_pred hhhHHHHHHHhCChhhhhh--hhHHHHHHHH-------hhHHHHHHHHHHHHHhC-------------------------
Confidence 998887666532 112111 1111111000 12467777777776421
Q ss_pred cccceeccCCccccchhcccccccccCCCCCCCCCCCCCCcccccccCCccccHHHHHHHHhhccCCCChhhhcccCCcc
Q 001851 822 SVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRE 901 (1004)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~~lP~~ 901 (1004)
+.-.-++|.--..++|...++..+.+.
T Consensus 1415 -----------------------------------------------------P~llnDlL~vL~pRlDh~r~v~~f~K~ 1441 (1666)
T KOG0985|consen 1415 -----------------------------------------------------PLLLNDLLTVLSPRLDHTRTVSIFSKA 1441 (1666)
T ss_pred -----------------------------------------------------hHHHHHHHHhcccccCchHHHHHHHhc
Confidence 011223444445778877788888777
Q ss_pred cchhchHHHHHHHHHhhHHHHH
Q 001851 902 TKLQNLLPFLEPLLRKSSEAHR 923 (1004)
Q Consensus 902 ~~l~~l~~fL~~~l~~~~~~~r 923 (1004)
-.++.+++||.++...+.....
T Consensus 1442 ~~lpLikpyl~~vq~~Nn~avN 1463 (1666)
T KOG0985|consen 1442 GQLPLIKPYLRAVQSLNNKAVN 1463 (1666)
T ss_pred CCCcccHHHHHHHHhcchHHHH
Confidence 7788899999888776554433
No 15
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0021 Score=75.79 Aligned_cols=94 Identities=23% Similarity=0.261 Sum_probs=72.2
Q ss_pred HHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCCC
Q 001851 511 LLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFN 590 (1004)
Q Consensus 511 Ll~~yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~ 590 (1004)
++.+|++.++ ..|.+|||..++|+++.+.+++.+.|.|+|++.|+.+-|++.+||.+.+.- ..+
T Consensus 613 ~I~LYAEyDr-k~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~e---------------l~d 676 (846)
T KOG2066|consen 613 QIELYAEYDR-KKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINE---------------LRD 676 (846)
T ss_pred HHHHHHHHhH-hhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHH---------------hhC
Confidence 4567888764 467799999999999999999999999999999999999999999998751 124
Q ss_pred hHhHHHHhcccCCCCchhHHhhchhhhccCccc
Q 001851 591 PESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQ 623 (1004)
Q Consensus 591 ~~~~~~yL~~L~~~~~~li~~~~~wll~~~p~~ 623 (1004)
++.+++|.+ ...|.+|+-.-....+++ |+-
T Consensus 677 ie~AIefvK--eq~D~eLWe~LI~~~ldk-Pe~ 706 (846)
T KOG2066|consen 677 IEKAIEFVK--EQDDSELWEDLINYSLDK-PEF 706 (846)
T ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhhcC-cHH
Confidence 678899987 335555544444444432 543
No 16
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.10 E-value=0.0002 Score=75.47 Aligned_cols=166 Identities=19% Similarity=0.322 Sum_probs=118.8
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCC--------------CC---------Ccccc---cccccceeeee
Q 001851 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRS--------------PP---------SDYQS---LRKESYELERT 69 (1004)
Q Consensus 16 ~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~--------------~~---------~~~~~---l~~~~~~~~~~ 69 (1004)
...|+|+++.+-++.=|.+|-+|++|++.....-.. .| +|.+. -...+|.+.++
T Consensus 43 ~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s 122 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS 122 (362)
T ss_pred ccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence 468999999999999999999999999887543210 11 11111 14567877777
Q ss_pred ecCCCCCceeEEEEecccCceeeeeC-c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCc
Q 001851 70 ISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRG 147 (1004)
Q Consensus 70 ~~~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~ 147 (1004)
++. ++.+|+.|.+=|...+.+.+++ + +..|+|-+.+.-....-.+.++.+.++++....+|+.+.+|.+|+.+..
T Consensus 123 lK~-H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A-- 199 (362)
T KOG0294|consen 123 LKA-HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA-- 199 (362)
T ss_pred ecc-cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccH--
Confidence 665 4556999999999999999986 5 8999986654333233344566777787777789999999999998843
Q ss_pred eeEeeeeecCCCceEEEec-CCeEEEEEcCce-EEEEcCC
Q 001851 148 FVEVKDFGVPDTVKSMSWC-GENICIAIRKGY-MILNATN 185 (1004)
Q Consensus 148 f~~~kEi~l~d~~~~l~~~-~~~i~v~~~~~y-~lidl~~ 185 (1004)
...+|+..|-.+.++.|. ++.+.+|-.++. .+.|.++
T Consensus 200 -~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 200 -SVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred -hHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence 244667777777888887 467888877643 3345544
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.02 E-value=0.0019 Score=69.45 Aligned_cols=186 Identities=15% Similarity=0.169 Sum_probs=116.7
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..+.++.... +.+++|+.+|.|.+|++..... ...+. .+..+|..+...+...++++.+
T Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~------------------~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 112 (289)
T cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGEC------------------VRTLT-GHTSYVSSVAFSPDGRILSSSS 112 (289)
T ss_pred cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc------------------eEEEe-ccCCcEEEEEEcCCCCEEEEec
Confidence 4565555554 4899999999999999875321 11112 2355899999998866666666
Q ss_pred -Cc-eEEEeCCCCccccccc-CCCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeec-CCCceEEEecCC-
Q 001851 95 -ES-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWCGE- 168 (1004)
Q Consensus 95 -d~-v~~~~L~~l~~~~~i~-~~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l-~d~~~~l~~~~~- 168 (1004)
|+ +.+|++.+.+....+. ....++.++++++...++++. .+.+.+|....++. ...+.. .+.+.++.|..+
T Consensus 113 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~ 189 (289)
T cd00200 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSPDG 189 (289)
T ss_pred CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc---ceeEecCccccceEEECCCc
Confidence 55 9999987665544443 234577888887755666666 88898988763322 222333 347889999854
Q ss_pred -eEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEe--CCeEEEEcCC
Q 001851 169 -NICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGK--ENIGVFVDQN 224 (1004)
Q Consensus 169 -~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~--~~~gvfv~~~ 224 (1004)
.++++.. ....++|+.++.....+.........+...+++.++++. ++...+++..
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 6777764 668889998876555442211111223344556666643 4444455543
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.90 E-value=0.0051 Score=71.99 Aligned_cols=221 Identities=19% Similarity=0.295 Sum_probs=148.8
Q ss_pred CCcEEEEEEe--CCEEEEEeCC-CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 16 SPKIDAVASY--GLKILLGCSD-GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~-G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
..+|..+... |+.|.+|+.. |.|++|.-+.. .|.+.++ -+-..|+.+.+.|..+++++
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----------------sYVlKQQ---gH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----------------SYVLKQQ---GHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeecc----------------ceeeecc---ccccceeeEEECCCCcEEEe
Confidence 3577777666 8999999987 99999987642 4666543 23568999999999999998
Q ss_pred eeC-c-eEEEeCC-CCcccccccCCCCcEEEEecCCCc-EEEEEECCeEEEEEecCCCceeEeeeeecCCCceE--EEec
Q 001851 93 LSE-S-IAFHRLP-NLETIAVLTKAKGANVYSWDDRRG-FLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKS--MSWC 166 (1004)
Q Consensus 93 l~d-~-v~~~~L~-~l~~~~~i~~~kg~~~f~~~~~~~-~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~--l~~~ 166 (1004)
=+| + |++|+.. .|-.++--+.+.|++.+++..... .++....+++..|...+.+.| |.+..|.+++. ++-.
T Consensus 368 G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPEPIQFSCVAVD 444 (893)
T ss_pred ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCCceeeeEEEEc
Confidence 776 6 9999964 344333234567888887765443 344557889988888765544 55777887764 4444
Q ss_pred --CCeEEEEEcCceEE--EEcCCCCcccccCCCCCCCCEE--EEccCCeEEEE--eCCeEE---EEcCCCCcccCcceee
Q 001851 167 --GENICIAIRKGYMI--LNATNGALSEVFPSGRIGPPLV--VSLLSGELLLG--KENIGV---FVDQNGKLLQADRICW 235 (1004)
Q Consensus 167 --~~~i~v~~~~~y~l--idl~~~~~~~L~~~~~~~~p~i--~~~~~~E~Ll~--~~~~gv---fv~~~G~~~~~~~i~w 235 (1004)
|+.+|.|....|.| .+++||+..+++.-.. -|+. ..-+.+..|.. .|.+.- +++..|. ..+++-
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE--gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~---vEtl~i 519 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE--GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT---VETLEI 519 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--CcceeeEEccccCeEEeccccceEEEEEeeccCce---eeeEee
Confidence 78999999887755 5899999988876432 2332 23344555442 344332 2344554 367777
Q ss_pred cCCCceEEEe--CC-eEEEEcCCeeEEEEcc
Q 001851 236 SEAPIAVIIQ--KP-YAIALLPRRVEVRSLR 263 (1004)
Q Consensus 236 ~~~P~~i~~~--~P-Yll~~~~~~ieV~~l~ 263 (1004)
......+.+. .- --++...+.|.++++.
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 7777778776 22 3344445789999875
No 19
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=97.88 E-value=9.1e-05 Score=85.61 Aligned_cols=239 Identities=20% Similarity=0.298 Sum_probs=152.7
Q ss_pred cccCCCCcEEEEEEe------CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEe
Q 001851 11 LISNCSPKIDAVASY------GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVL 84 (1004)
Q Consensus 11 l~~~~~~~I~ci~~~------~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l 84 (1004)
+....|.+|.|.+.| +++|.+|+++| ||..++++-... .+.+ .| ...++.+.++
T Consensus 486 vfngCpl~i~~aaswIhp~t~dq~ll~gaeeg-Iy~lnlnel~e~---------------~le~---l~-~~r~Twly~~ 545 (829)
T KOG0576|consen 486 VFNGCPLRIHCAASWIHPSTRDQALLFGAEEG-IYTLNLNELHEA---------------TLEK---LF-PRRCTWLYVI 545 (829)
T ss_pred HhccCcccceecccccCcchhhhHhhhhhccc-eeeccccccccc---------------cHhh---cc-ccCceEEEec
Confidence 455668899999999 46899999999 677776653221 1111 11 2355666555
Q ss_pred cccCceeeeeC-c--eEEEeC--------------------CC------CcccccccCCCCcEEEEecCC--C--cEEEE
Q 001851 85 ASRQLLLSLSE-S--IAFHRL--------------------PN------LETIAVLTKAKGANVYSWDDR--R--GFLCF 131 (1004)
Q Consensus 85 ~~~~~ll~l~d-~--v~~~~L--------------------~~------l~~~~~i~~~kg~~~f~~~~~--~--~~l~V 131 (1004)
+ +.+..+++ . +.-|++ ++ +.....++.+|||...||-.+ . ..+|-
T Consensus 546 ~--n~l~slsgks~~ly~H~l~~l~~~~~~~~~~s~~~h~~per~~prk~a~stkipeTkgc~~c~V~R~~~~g~~~lc~ 623 (829)
T KOG0576|consen 546 N--NVLTSLSGKSTQLYSHDLGGLFEAGEGTLFGSIIVHKEPERILPRKFALSTKIPETKGCQQCCVVRNPYTGGKFLCG 623 (829)
T ss_pred C--ceeeeccCCccceeecchHHHHhhhcccccccccccCCCccccchhhceeeecCccccceeeeeecCCCCCCceeec
Confidence 4 34444444 1 444443 22 122245788999998888544 2 36899
Q ss_pred EECCeEEEEEecC-CCceeEeeeeecC--CCceEEEec------CCeEEEEEcCc---------eEEEEcCCCCcccccC
Q 001851 132 ARQKRVCIFRHDG-GRGFVEVKDFGVP--DTVKSMSWC------GENICIAIRKG---------YMILNATNGALSEVFP 193 (1004)
Q Consensus 132 ~~kkki~l~~~~~-~~~f~~~kEi~l~--d~~~~l~~~------~~~i~v~~~~~---------y~lidl~~~~~~~L~~ 193 (1004)
+....+.+++|-. -..|..+|.|..| .+....+.. ...+|+|...+ |...+......-.+..
T Consensus 624 alp~sivl~qwy~Pm~kf~l~k~i~~pl~~p~~~f~~l~~~~~e~p~vc~Gv~~~~~~~~~~v~f~~~~~~~~~~w~~~~ 703 (829)
T KOG0576|consen 624 ALPTSIVLLQWYEPMNKFMLVKSISFPLPSPLSVFEMLVLPESEYPQVCVGVSAGGGTLNNEVLFHTAFLNSDSSWDIEA 703 (829)
T ss_pred ccCceeEEeeecChHHhhhHHHhcccCCCCccchhhhccccCcccceeeeeccCCCCCCCceeEEEecccccccccceec
Confidence 9999999999974 2357666765433 222222211 35899997632 2222222222222222
Q ss_pred CCC-CCCCEEEEccCCeEEEEeCCeEEEEcCCCCcc----cCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCce
Q 001851 194 SGR-IGPPLVVSLLSGELLLGKENIGVFVDQNGKLL----QADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYAL 268 (1004)
Q Consensus 194 ~~~-~~~p~i~~~~~~E~Ll~~~~~gvfv~~~G~~~----~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~l 268 (1004)
.+. ...|.+..+..+-+++|++++...++.+|++. ..+.+.++..+.++++..-=++++.+.+++.+++. +..+
T Consensus 704 ~~~~~~v~~v~qvdrd~I~v~~~n~V~~v~lqG~~~~~~~~~sel~f~f~iesv~~~~gsvlaf~~hgvqgr~l~-S~~v 782 (829)
T KOG0576|consen 704 AGETLPVPQVTQVDRDTILVLFENMVKIVNLQGNGKVAVKLLSELTFDFDIESVVCLQGSVLAFWKHGVQGRSLT-SNEV 782 (829)
T ss_pred cCcccCCceeEEecccceEeeecCeeEEEeccCCccccccccccccccCCcceEEeeCCceecccCCcceeeecc-chHH
Confidence 221 13466777888899999999999999999633 13578899999999999999999999999999996 4555
Q ss_pred eEEE
Q 001851 269 IQTI 272 (1004)
Q Consensus 269 vQti 272 (1004)
-|.|
T Consensus 783 tqei 786 (829)
T KOG0576|consen 783 TQEI 786 (829)
T ss_pred HHHH
Confidence 4544
No 20
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0006 Score=81.51 Aligned_cols=233 Identities=18% Similarity=0.255 Sum_probs=155.3
Q ss_pred HHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccc
Q 001851 507 LDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHT 586 (1004)
Q Consensus 507 vDT~Ll~~yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~ 586 (1004)
+-.+|.|.|+..+... ..|++.+++.|...|=..++++.- .||.+...+|+-+.-| .. .....
T Consensus 874 ~hnAlaKIyIDSNNnP--E~fLkeN~yYDs~vVGkYCEKRDP--~lA~vaYerGqcD~el--I~-vcNeN---------- 936 (1666)
T KOG0985|consen 874 THNALAKIYIDSNNNP--ERFLKENPYYDSKVVGKYCEKRDP--HLACVAYERGQCDLEL--IN-VCNEN---------- 936 (1666)
T ss_pred HHhhhhheeecCCCCh--HHhcccCCcchhhHHhhhhcccCC--ceEEEeecccCCcHHH--HH-hcCch----------
Confidence 5678899999887533 268888778888888777776654 3455556666654322 11 11100
Q ss_pred cCCChHhHHHHhcccCCCCchhHHhhchhhhccCccc------hhcccccCCCChHH----HHHHHhhcCccchhhhHHH
Q 001851 587 QKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQ------TIELFLSGNIPADL----VNSYLKQYSPSMQGRYLEL 656 (1004)
Q Consensus 587 ~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~p~~------~i~if~~~~l~~~~----vl~~L~~~~~~l~~~YLE~ 656 (1004)
.+ ...-.+||. +..|.+|+- ..|-+.+|-+ -++.=..+.-+|+. |-.|+...-|...+.-||.
T Consensus 937 Sl--fK~~aRYlv--~R~D~~LW~---~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEK 1009 (1666)
T KOG0985|consen 937 SL--FKSQARYLV--ERSDPDLWA---KVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEK 1009 (1666)
T ss_pred hH--HHHHHHHHH--hccChHHHH---HHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 00 123456664 345555432 2233333321 11111223344543 4567777678889999999
Q ss_pred HHhcccC-CCCcchHHHHHHHHHHHHHHhhhhhhhhcccCcccchHHHHHHHHHHhhcCCCChHHHhccCCCCchhHHHH
Q 001851 657 MLAMNEN-SISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERA 735 (1004)
Q Consensus 657 li~~~~~-~~~~~~h~~L~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~ 735 (1004)
+|..+-. +....++|.|+..=+ +..|.+.+.++..-++||+..+-..+-...|++|.-
T Consensus 1010 IvL~~S~Fse~~nLQnLLiLtAi---------------------kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 1010 IVLDNSVFSENRNLQNLLILTAI---------------------KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAF 1068 (1666)
T ss_pred HhcCCcccccchhhhhhHHHHHh---------------------hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHH
Confidence 9974310 124556665553222 124899999999999999999999888889999999
Q ss_pred HHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHhcCC
Q 001851 736 ILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNP 795 (1004)
Q Consensus 736 ~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~Ll~~~l~~ 795 (1004)
-+|.|-..|..|+..++...++++.|-+|+.++. .+.+|..+.+.=|+.
T Consensus 1069 ~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n-----------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1069 AIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN-----------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC-----------ChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999985 568999887755544
No 21
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.0023 Score=67.62 Aligned_cols=233 Identities=16% Similarity=0.222 Sum_probs=136.6
Q ss_pred EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eEE
Q 001851 22 VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IAF 99 (1004)
Q Consensus 22 i~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~~ 99 (1004)
+..||..|.+|+.+|.+.+|+..-. ...+.+ +.+-.||+.|.-.+...+||+-+ |. +..
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~------------------~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTF------------------RIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred eccCcceeeeeccCCcEEEEEcccc------------------chhhhh-hccccceeEEEecCCCCEeeeecCCceeEE
Confidence 4567899999999999999997632 122221 23467999999999998888876 54 999
Q ss_pred EeCCCCcccccccCCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEee--eeecCCCceEEEe--cCCeEEEE
Q 001851 100 HRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVK--DFGVPDTVKSMSW--CGENICIA 173 (1004)
Q Consensus 100 ~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~k--Ei~l~d~~~~l~~--~~~~i~v~ 173 (1004)
|++..-.+...+...-.+...-+.+...+.||+ .+..-.+..++++..-...+ +..+...+....| .|..|+.|
T Consensus 92 wDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred EeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 998765555555444444444455555555554 56666666666321111111 2233333333333 47899999
Q ss_pred EcCc-eEEEEcCCCCcccccCCCC-C-CCCEEEEccCCeEEE--EeCCeEEEEc--------CCCCcccC-------cce
Q 001851 174 IRKG-YMILNATNGALSEVFPSGR-I-GPPLVVSLLSGELLL--GKENIGVFVD--------QNGKLLQA-------DRI 233 (1004)
Q Consensus 174 ~~~~-y~lidl~~~~~~~L~~~~~-~-~~p~i~~~~~~E~Ll--~~~~~gvfv~--------~~G~~~~~-------~~i 233 (1004)
+.+| +.++|..|-....-+.... + -+.++. ...++||+ +.|.+.-.|+ .+|.+... +..
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIV-SRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEE-eccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9866 6677887765443333221 1 122332 34556665 4555443332 34444321 345
Q ss_pred eecCCCceEEEeCCeEEEEcCC--eeEEEEccCCCceeEEEeeCCc
Q 001851 234 CWSEAPIAVIIQKPYAIALLPR--RVEVRSLRVPYALIQTIVLQNV 277 (1004)
Q Consensus 234 ~w~~~P~~i~~~~PYll~~~~~--~ieV~~l~~~~~lvQti~l~~~ 277 (1004)
+|..- .+.-..-||+|-+.. .+.|.--. .|++|..+.-+.+
T Consensus 251 ~Wk~c--cfs~dgeYv~a~s~~aHaLYIWE~~-~GsLVKILhG~kg 293 (405)
T KOG1273|consen 251 QWKKC--CFSGDGEYVCAGSARAHALYIWEKS-IGSLVKILHGTKG 293 (405)
T ss_pred hhhhe--eecCCccEEEeccccceeEEEEecC-CcceeeeecCCch
Confidence 67532 112246799998874 46666543 5788888876654
No 22
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.00047 Score=81.52 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=87.1
Q ss_pred CCChHHH-HHHHhhcCccchhhhHHHHHhcccCCCCcchHHH-HHHHHHHHHHHhhhhhhhhcccCcccchHHHHHHHHH
Q 001851 632 NIPADLV-NSYLKQYSPSMQGRYLELMLAMNENSISGNLQNE-MVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSA 709 (1004)
Q Consensus 632 ~l~~~~v-l~~L~~~~~~l~~~YLE~li~~~~~~~~~~~h~~-L~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~r~kLl~f 709 (1004)
.+.|..| ..||+...-.-...|||.|+... ....-|++ |...|+.. ..-.||..|
T Consensus 397 ~le~s~Vi~kfLdaq~IknLt~YLe~L~~~g---la~~dhttlLLncYiKl--------------------kd~~kL~ef 453 (933)
T KOG2114|consen 397 FLEPSEVIKKFLDAQRIKNLTSYLEALHKKG---LANSDHTTLLLNCYIKL--------------------KDVEKLTEF 453 (933)
T ss_pred cCChHHHHHHhcCHHHHHHHHHHHHHHHHcc---cccchhHHHHHHHHHHh--------------------cchHHHHHH
Confidence 3445544 34665543455788999999743 34455665 45567652 124789999
Q ss_pred HhhcC----CCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001851 710 LESIS----GYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRV 768 (1004)
Q Consensus 710 L~~s~----~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~ 768 (1004)
.+.-+ .+|.+.+++.|...++..|.-+|-.|-++|+-+|+++++.++|+++|.+|-...
T Consensus 454 I~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 454 ISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 98755 789999999999999988888888999999999999999999999999998543
No 23
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.029 Score=65.22 Aligned_cols=238 Identities=18% Similarity=0.194 Sum_probs=148.0
Q ss_pred CCCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 15 CSPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 15 ~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
.|..|+|++-.. +.|.||=++|.|-+|++.. .|-+.+.+.+...+.|+.|.-.+ .+.|+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-----------------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS 85 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-----------------NWFLEPVIHGPEDRSIESLAWAE-GGRLFS 85 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCC-----------------CceeeEEEecCCCCceeeEEEcc-CCeEEe
Confidence 378999998775 6899999999999999875 34555555665577999998884 577777
Q ss_pred eeC-c-eEEEeCCCCcccccccCCCCcE-EEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeec---CCCceEEEec
Q 001851 93 LSE-S-IAFHRLPNLETIAVLTKAKGAN-VYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGV---PDTVKSMSWC 166 (1004)
Q Consensus 93 l~d-~-v~~~~L~~l~~~~~i~~~kg~~-~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l---~d~~~~l~~~ 166 (1004)
..- | |.-|+|.++++...+...-|+. ..|+++....++|+....+ +|.++.+..- ...+..+ ...+.++.|.
T Consensus 86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv-l~~~s~~p~~-I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGV-LYDFSIGPDK-ITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCce-EEEEecCCce-EEEEeecccccceEEEEEec
Confidence 654 5 9999999999887765555554 3677887788999966664 4443322211 1222333 2568889998
Q ss_pred CC--eEEEEEcCc-eEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEeCCeEEEEcCCCCcccCcceeecCCCceEE
Q 001851 167 GE--NICIAIRKG-YMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVI 243 (1004)
Q Consensus 167 ~~--~i~v~~~~~-y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~~~~gvfv~~~G~~~~~~~i~w~~~P~~i~ 243 (1004)
++ .|+.|+..+ ..+-|..+++..-+.+ +-++.-++ ++.+|.| ++.
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~-------------------------~~~d~l~k--~~~~iVW-----Sv~ 211 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIIT-------------------------MQLDRLSK--REPTIVW-----SVL 211 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEee-------------------------eccccccc--CCceEEE-----EEE
Confidence 54 477777766 4555776654322111 00111111 2456666 333
Q ss_pred EeCCeEEE-EcC-CeeEEEEccCCCceeEEEeeCCc--ccccc--CCCeEEEE-eCCeEEEecccChHH
Q 001851 244 IQKPYAIA-LLP-RRVEVRSLRVPYALIQTIVLQNV--RHLIP--SSNAVVVA-LENSIFGLFPVPLGA 305 (1004)
Q Consensus 244 ~~~PYll~-~~~-~~ieV~~l~~~~~lvQti~l~~~--~~l~~--~~~~v~va-s~~~i~~l~~~~~~~ 305 (1004)
+..+=.++ ..+ +.|.+.+-. .+.++|++.+-.. ..++. .++.++.+ .+..|+.+...+-..
T Consensus 212 ~Lrd~tI~sgDS~G~V~FWd~~-~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 212 FLRDSTIASGDSAGTVTFWDSI-FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EeecCcEEEecCCceEEEEccc-CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 33332222 222 567777776 4888888766443 33332 33455544 467888887766443
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.041 Score=63.33 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=135.4
Q ss_pred CcEEEEEEeC-C---EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 17 PKIDAVASYG-L---KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 17 ~~I~ci~~~~-~---~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
.-|+||+-++ + +|.-|.+|-++.+|+.+. ..++++..+ +...|+.....|+..++++
T Consensus 184 kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------------------k~CV~TLeG-Ht~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------------------KSCVQTLEG-HTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred cCcceEEeccCCCcceEEecCCCceEEEeecch------------------HHHHHHhhc-ccccceEEEecCCCcEEEE
Confidence 3589999986 3 899999999999998653 123333333 3568999999999999999
Q ss_pred eeC-c-eEEEeCCCCcccccccCCCCcEEEEe--cCCCcEEEEEECCeEEEEEecCCC----------------------
Q 001851 93 LSE-S-IAFHRLPNLETIAVLTKAKGANVYSW--DDRRGFLCFARQKRVCIFRHDGGR---------------------- 146 (1004)
Q Consensus 93 l~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~--~~~~~~l~V~~kkki~l~~~~~~~---------------------- 146 (1004)
.++ | +.+|.-.+++...++- .-.-...|+ ..+.+.++|+-.....++++.++.
T Consensus 245 gsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~ 323 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAV 323 (794)
T ss_pred ecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeee
Confidence 887 6 9998876664322210 001112222 233334444433333333322110
Q ss_pred ---------------ce-eEeeeeecCC-CceEEEec--CCeEEEEEcCceEEEEcCCCCcccccCCCCCCCCEEEEccC
Q 001851 147 ---------------GF-VEVKDFGVPD-TVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLS 207 (1004)
Q Consensus 147 ---------------~f-~~~kEi~l~d-~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~ 207 (1004)
.. -.+||.-.-+ -|++++-. |..+.|+...+|.++..-.-+.. ..| ++.-.+...+.
T Consensus 324 ~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK---~fG-~~~eFvw~~ds 399 (794)
T KOG0276|consen 324 NLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNK---AFG-SGLEFVWAADS 399 (794)
T ss_pred eceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhc---ccc-cceeEEEcCCC
Confidence 00 0012211001 12333222 34455555555555542110000 001 11233433334
Q ss_pred CeEEEE--eCCeEEEEcCCCCcccCcceeecCCCceEEEeCCeEEEEcC-CeeEEEEccCCCceeEEEeeCCccc-cccC
Q 001851 208 GELLLG--KENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVRH-LIPS 283 (1004)
Q Consensus 208 ~E~Ll~--~~~~gvfv~~~G~~~~~~~i~w~~~P~~i~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~l~~~~~-l~~~ 283 (1004)
+||.+- .+++-+| .+++-.++-.+.. ..-.+..|+++++.. +++-++++. ++.+|+.|....-.. ...+
T Consensus 400 ne~avRes~~~vki~--knfke~ksi~~~~----~~e~i~gg~Llg~~ss~~~~fydW~-~~~lVrrI~v~~k~v~w~d~ 472 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF--KNFKEHKSIRPDM----SAEGIFGGPLLGVRSSDFLCFYDWE-SGELVRRIEVTSKHVYWSDN 472 (794)
T ss_pred CeEEEEecCCceEEE--ecceecccccccc----ceeeecCCceEEEEeCCeEEEEEcc-cceEEEEEeeccceeEEecC
Confidence 666553 2233344 3333221111111 123455678888765 899999996 699999999864322 2233
Q ss_pred CCeEEEEeCCeEEEecccChHHHHHHHHhcC
Q 001851 284 SNAVVVALENSIFGLFPVPLGAQIVQLTASG 314 (1004)
Q Consensus 284 ~~~v~vas~~~i~~l~~~~~~~qi~~Ll~~~ 314 (1004)
+..+-++++.+.|.|.-- .+.+...++.|
T Consensus 473 g~lVai~~d~Sfyil~~n--~d~v~~a~e~g 501 (794)
T KOG0276|consen 473 GELVAIAGDDSFYILKFN--ADAVANAVEQG 501 (794)
T ss_pred CCEEEEEecCceeEEEec--HHHHHHHHhcC
Confidence 345557888886655432 34444444443
No 25
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=97.48 E-value=0.0018 Score=63.20 Aligned_cols=106 Identities=25% Similarity=0.327 Sum_probs=83.5
Q ss_pred CCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEeeC--Cccccc----cCCCeEEEEeCCeEEEecccChHHHHHH-H
Q 001851 238 APIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQ--NVRHLI----PSSNAVVVALENSIFGLFPVPLGAQIVQ-L 310 (1004)
Q Consensus 238 ~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l~--~~~~l~----~~~~~v~vas~~~i~~l~~~~~~~qi~~-L 310 (1004)
.|.+++...-|++.+.++.|.|.+..+ +.+|+.-.+. ..+.+. ...+.+++-|++.||.+....-+..+-. +
T Consensus 35 ~p~si~lT~~H~llL~~~~l~~vn~L~-~~vV~e~~~~~~~~~~~gl~~D~~~~t~W~ys~~~I~ei~i~~E~r~vWk~y 113 (147)
T PF05131_consen 35 PPLSIALTEFHLLLLYSDRLIAVNRLN-NKVVFEESLLETGGKILGLCRDPSSNTFWLYSSNSIFEIVINNEDRDVWKIY 113 (147)
T ss_pred CcceEEeeceeeeEEeCCEEEEEEecC-CcEEEEEEeccCCcceeeEEEcCCCCeEEEEeCCeeEEEEcCcchHHHHHHH
Confidence 389999999999999999999999874 7787655542 233322 3467899999999999999987777654 6
Q ss_pred HhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcC
Q 001851 311 TASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDT 352 (1004)
Q Consensus 311 l~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~ 352 (1004)
+++|+|++|+++|+..+ .....|....|.+||++
T Consensus 114 l~~~~fd~Al~~~~~~~--------~~~d~V~~~qa~~lf~k 147 (147)
T PF05131_consen 114 LDKGDFDEALQYCKTNP--------AQRDQVLIKQADHLFQK 147 (147)
T ss_pred HhcCcHHHHHHHccCCH--------HHHHHHHHHHHHHHhhC
Confidence 89999999999997631 24457888999999974
No 26
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.012 Score=68.84 Aligned_cols=280 Identities=12% Similarity=0.136 Sum_probs=164.7
Q ss_pred CcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-C
Q 001851 17 PKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-E 95 (1004)
Q Consensus 17 ~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d 95 (1004)
.+.+|+++.++++.+|++.|.||.|+-..+. .... ++-.+-.|+-...+...+.+++.+ +
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-----------------~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-----------------MRKL--KNEGATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchh-----------------hhcc--cccCccceEEEEEecchhHhhhhhcC
Confidence 4678999999999999999999999855432 1111 111133444444555556666554 3
Q ss_pred -c-eEEEeCCCCcc-----cccccC--CCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeE--eee-eecCCCceE
Q 001851 96 -S-IAFHRLPNLET-----IAVLTK--AKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVE--VKD-FGVPDTVKS 162 (1004)
Q Consensus 96 -~-v~~~~L~~l~~-----~~~i~~--~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~--~kE-i~l~d~~~~ 162 (1004)
| |.++.+..-.+ +....+ ..-|++.+++.+..++.+| .+++|.+.+++. +.+.. ..+ ..++..|..
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s-~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS-RQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech-hhhhccccceeeccCcceEE
Confidence 4 88888754111 111222 3457888998888889999 788888888873 22222 123 356778888
Q ss_pred EEecCCeEEEEEcCceEEEEcCCCCcccccCCCCCC-CCE-EEEcc-----CCeEEEE-eCCeEEE-EcCCCCcc-----
Q 001851 163 MSWCGENICIAIRKGYMILNATNGALSEVFPSGRIG-PPL-VVSLL-----SGELLLG-KENIGVF-VDQNGKLL----- 228 (1004)
Q Consensus 163 l~~~~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~-~p~-i~~~~-----~~E~Ll~-~~~~gvf-v~~~G~~~----- 228 (1004)
+......+.|++-..-.+.++..+.+..+=...+.+ .++ ++.++ +.-+++| +-+.-+- +|..|.+.
T Consensus 176 lD~~q~~LLVStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqf 255 (726)
T KOG3621|consen 176 LDYLQSYLLVSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQF 255 (726)
T ss_pred eecccceehHhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeeh
Confidence 888888888888877777787766544431111110 011 12221 1223333 3332221 34444332
Q ss_pred -------cCcceeecC--CCc---------------eEEEeCCeEEEEcCCeeEEEEccCCCceeEEEeeC-C---cccc
Q 001851 229 -------QADRICWSE--API---------------AVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQ-N---VRHL 280 (1004)
Q Consensus 229 -------~~~~i~w~~--~P~---------------~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l~-~---~~~l 280 (1004)
+.+.|...+ .|. ......-+++++++.+|.|.+..+ .|++... . +..+
T Consensus 256 k~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~Giyv~d~~~----~~v~l~se~~~DI~dV 331 (726)
T KOG3621|consen 256 KDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVGIYVFDSNN----SQVYLWSEGGHDILDV 331 (726)
T ss_pred hhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecceEEEEEecc----ceEEEeecCCCceeEE
Confidence 122233322 221 122334479999998899998864 4666544 2 2233
Q ss_pred ccCCCeEEEEe-CCeEEEecccChHHHHHHHHhcCCHHHHH
Q 001851 281 IPSSNAVVVAL-ENSIFGLFPVPLGAQIVQLTASGDFEEAL 320 (1004)
Q Consensus 281 ~~~~~~v~vas-~~~i~~l~~~~~~~qi~~Ll~~~~~eeAl 320 (1004)
..+++.+|+-. ++.+..+........+..|+..|..-.++
T Consensus 332 s~~~neiFvL~~d~~l~~~sv~s~qr~l~~l~~~G~~m~~~ 372 (726)
T KOG3621|consen 332 SHCGNEIFVLNLDRGLKVESVASRQRKLESLCRCGKEMFVL 372 (726)
T ss_pred eecCceEEEEecCCceeEEEeehhHHHHHHHHhhchhhhhh
Confidence 45677777644 55688888888899999999999655443
No 27
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0015 Score=79.18 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=76.2
Q ss_pred ccchhchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-ceEEECCCCcCCcCCCcc--CCcEEEEcC-C
Q 001851 901 ETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRK-TVVKITSDSMCSLCSKKI--GTSVFAVYP-N 976 (1004)
Q Consensus 901 ~~~l~~l~~fL~~~l~~~~~~~r~~~i~~~l~~~~~~~~~~el~~~~~-~~v~i~~~~~C~vC~k~l--~~~~f~v~p-~ 976 (1004)
.++++++++-|..++..+.+.....+....+.+...+.+..+..+..+ |.-.| ....|..|++++ +.++.. |- |
T Consensus 1078 ~~tf~D~kqlLl~~~~s~~~e~el~~~s~kii~~~~l~l~~~~r~~~shr~~~i-ht~~c~~c~q~~~~h~~~~~-Fl~w 1155 (1206)
T KOG2079|consen 1078 LMTFQDLKQLLLNVFNSYKLERELSELSQKIIEDSSLDLVQQYRKFLSHRGWSI-HTDDCEICGQKIWAHLDPLL-FLAW 1155 (1206)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhccCcee-cCcchHhhhhhhhccCcchh-eeec
Confidence 488999999999999999999888888888887888877776666555 55555 477999999998 555555 54 8
Q ss_pred CCeEEEecccCCchhhhhhccC
Q 001851 977 GKTIVHFVCFRDSQSMKAVAKG 998 (1004)
Q Consensus 977 ~~~v~H~~C~~~~~~~~~~~~~ 998 (1004)
| |+-|+.|..+....||....
T Consensus 1156 g-h~qh~qc~~~~d~~c~~v~i 1176 (1206)
T KOG2079|consen 1156 G-HVQHHQCMISVDLKCPLVII 1176 (1206)
T ss_pred c-chhhHHHHHHHhhcCCccee
Confidence 8 99999999988888885443
No 28
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.35 E-value=0.0043 Score=73.40 Aligned_cols=181 Identities=15% Similarity=0.207 Sum_probs=111.5
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc
Q 001851 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES 96 (1004)
Q Consensus 18 ~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~ 96 (1004)
...|+..+||+.+||++.|.|-+|+++.... ...|- ....++.+|+-+.+.-...++++.+ +|
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------------r~sf~----~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------------RKSFG----DSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCee------------ecccc----cCccccCceeEEEecCCCceEEEccCcc
Confidence 4457888899999999999999999875421 11111 0124688999998876655555443 47
Q ss_pred -eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeee-cCCCceEEEec--CCeEE
Q 001851 97 -IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC--GENIC 171 (1004)
Q Consensus 97 -v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l~~~--~~~i~ 171 (1004)
+.+|+......+.++.-.-+.+........+.++++ ..=.|.+|... . -+..||+. ..+.++.++|. |.+|+
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~-t--~kvvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV-T--RKVVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch-h--hhhhHHhhccccceeeeEeCCCCcEEE
Confidence 899997665444443333333333333333445554 34466666654 1 12345554 56788999987 56888
Q ss_pred EEEc-CceEEEEcCCCCcccccCCCCCCCCE--EEEccCCeEEEE--eCCeEEE
Q 001851 172 IAIR-KGYMILNATNGALSEVFPSGRIGPPL--VVSLLSGELLLG--KENIGVF 220 (1004)
Q Consensus 172 v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~--i~~~~~~E~Ll~--~~~~gvf 220 (1004)
.++. ....+.|+.+|...+-+.... |+ +..-+++.||.. .|..|++
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~vd~---~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLLVDS---PCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEecCC---cceeeEECCCCCEEEEEEecCceEE
Confidence 8877 556788999998777555432 22 223466777753 3444444
No 29
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.2 Score=53.54 Aligned_cols=205 Identities=18% Similarity=0.301 Sum_probs=126.1
Q ss_pred cccccccccCCCCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCC----------------------CCC--c--c
Q 001851 5 AFDSLELISNCSPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRS----------------------PPS--D--Y 56 (1004)
Q Consensus 5 ~f~~~~l~~~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~----------------------~~~--~--~ 56 (1004)
.|.....++....+|+|++-.. .+|...++|-+|.+|+........+ +.+ | -
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 4566677788889999999885 5888889999999999876543211 111 0 0
Q ss_pred cccccccceeeeeecCCCCCceeEEEEecccCceeeee-C-ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEEC
Q 001851 57 QSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ 134 (1004)
Q Consensus 57 ~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d-~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~k 134 (1004)
+.|....=..+|-|.+ +++.|..|.+.|-.+.++.-+ | .|.+|+|..-+-.. +-...+-.+.|.|++.-..|++.+
T Consensus 83 ryLsl~dNkylRYF~G-H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg-~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPG-HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG-LLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCC-CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce-EEecCCCcceeECCCCcEEEEecC
Confidence 1111111112334443 588999999999988888766 5 49999986432211 122233345566877556667755
Q ss_pred C-eEEEEEecC--CCceeEeeeeecC--C--CceEEEec--CCeEEEEEcCc-eEEEEcCCCCcccccCCC--CCCCCEE
Q 001851 135 K-RVCIFRHDG--GRGFVEVKDFGVP--D--TVKSMSWC--GENICIAIRKG-YMILNATNGALSEVFPSG--RIGPPLV 202 (1004)
Q Consensus 135 k-ki~l~~~~~--~~~f~~~kEi~l~--d--~~~~l~~~--~~~i~v~~~~~-y~lidl~~~~~~~L~~~~--~~~~p~i 202 (1004)
. .|.||.... ..-|.. |.++ + ....|.|. |..|.+++..+ -+++|.-+|....-|... ...-|+-
T Consensus 161 ~~~IkLyD~Rs~dkgPF~t---f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTT---FSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred CCeEEEEEecccCCCCcee---EccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 5 899998752 112332 3333 2 23456665 56889998865 577899999865444321 1123443
Q ss_pred -EEccCCeEEEEe
Q 001851 203 -VSLLSGELLLGK 214 (1004)
Q Consensus 203 -~~~~~~E~Ll~~ 214 (1004)
+..++++|+++.
T Consensus 238 a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 238 ATFTPDSKFVLSG 250 (311)
T ss_pred EEECCCCcEEEEe
Confidence 345889998753
No 30
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.08 E-value=0.57 Score=51.25 Aligned_cols=246 Identities=13% Similarity=0.195 Sum_probs=133.1
Q ss_pred EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--c-eEEEeCCC
Q 001851 28 KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFHRLPN 104 (1004)
Q Consensus 28 ~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--~-v~~~~L~~ 104 (1004)
-++.+..+|.|.+|++.... ..+.+.. ...+..+.+.|....+++.+. + +.+|++.+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~------------------~~~~~~~--~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLE------------------VTRTFPV--GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCc------------------eEEEEEC--CCCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 34567889999999875321 1122221 223566888887776655543 4 88999877
Q ss_pred CcccccccCCCCcEEEEecCCCcEEEEEE--CCeEEEEEecCCCceeEeeeeecCCCceEEEec--CCeEEEEEcC--ce
Q 001851 105 LETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIRK--GY 178 (1004)
Q Consensus 105 l~~~~~i~~~kg~~~f~~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~~--~y 178 (1004)
.+....+....++..++++++...++++. .+.|.+|....+ ..+..+.....+.+++|. |..++++... ..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 139 (300)
T TIGR03866 63 GEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETR---KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMA 139 (300)
T ss_pred CcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC---eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeE
Confidence 65544444444556777877766777763 466777776532 233445445567888887 4566666653 34
Q ss_pred EEEEcCCCCcccccCCCCCCCC-EEEEccCCeEE-EEe--CCeEEEEcCC-CCcccCcceeec--------CCCceEEEe
Q 001851 179 MILNATNGALSEVFPSGRIGPP-LVVSLLSGELL-LGK--ENIGVFVDQN-GKLLQADRICWS--------EAPIAVIIQ 245 (1004)
Q Consensus 179 ~lidl~~~~~~~L~~~~~~~~p-~i~~~~~~E~L-l~~--~~~gvfv~~~-G~~~~~~~i~w~--------~~P~~i~~~ 245 (1004)
..+|..++........+. .| .+...+++..| +.. ++...++|.. |...+ .+.|. ..|..+.+.
T Consensus 140 ~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 140 HFIDTKTYEIVDNVLVDQ--RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK--KITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred EEEeCCCCeEEEEEEcCC--CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee--eeeecccccccccCCccceEEC
Confidence 566887775443222221 23 23344566655 332 4444455653 33221 22221 134455554
Q ss_pred --CCeEEEE-c-CCeeEEEEccCCCceeEEEeeCC-cccc--ccCCCeEEEEe--CCeEEEeccc
Q 001851 246 --KPYAIAL-L-PRRVEVRSLRVPYALIQTIVLQN-VRHL--IPSSNAVVVAL--ENSIFGLFPV 301 (1004)
Q Consensus 246 --~PYll~~-~-~~~ieV~~l~~~~~lvQti~l~~-~~~l--~~~~~~v~vas--~~~i~~l~~~ 301 (1004)
..++++. . .+.+.|+++. ++..++.+.... +..+ .+.+..++++. ++.|......
T Consensus 216 ~dg~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 216 KDGKTAFVALGPANRVAVVDAK-TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECC-CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 3454443 2 3678888885 566666554322 1122 23344455443 3455554433
No 31
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.08 E-value=0.0096 Score=65.61 Aligned_cols=130 Identities=17% Similarity=0.258 Sum_probs=93.8
Q ss_pred cEEEEEEeCCE--EEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC
Q 001851 18 KIDAVASYGLK--ILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (1004)
Q Consensus 18 ~I~ci~~~~~~--L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d 95 (1004)
.++|++.|.+- +-.||.||.|.+|++...... ..|.+ +..||..|...+++-.|++=+|
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~------------------a~Fpg-ht~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV------------------AKFPG-HTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCcccc------------------ccCCC-CCCceeEEEeccCceEEEEEec
Confidence 57888888653 456889999999998865421 12333 4679999999998888888787
Q ss_pred -c-eEEEeCCCCcccc--cccCCCCcEEEEecCCCcEEEEEECCeEEEEEecC-CCceeEeeeeecCCCceEEEecC
Q 001851 96 -S-IAFHRLPNLETIA--VLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDG-GRGFVEVKDFGVPDTVKSMSWCG 167 (1004)
Q Consensus 96 -~-v~~~~L~~l~~~~--~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~-~~~f~~~kEi~l~d~~~~l~~~~ 167 (1004)
+ |.+|+|..++... .+...+++..+++|.....++++ ...+.+|.... ..++..++++.....+.+..|+|
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 6 9999997665333 34666789999999876667776 77788887652 34677777776555555556665
No 32
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.03 E-value=0.00063 Score=79.05 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=78.5
Q ss_pred eeEeeeeecCCCceEEEecCCe-EEEEEcCce-EEEEcCCC---CcccccCCCCCCCCE-EEEccCCeEEEEeCCeEEEE
Q 001851 148 FVEVKDFGVPDTVKSMSWCGEN-ICIAIRKGY-MILNATNG---ALSEVFPSGRIGPPL-VVSLLSGELLLGKENIGVFV 221 (1004)
Q Consensus 148 f~~~kEi~l~d~~~~l~~~~~~-i~v~~~~~y-~lidl~~~---~~~~L~~~~~~~~p~-i~~~~~~E~Ll~~~~~gvfv 221 (1004)
|..+..+..| .|.+....... +++++.+-| +-+|-.+. ....++++.+..-|. ...++.+|++++|.|-|+||
T Consensus 1073 fs~~akl~vp-ePlsFies~P~gfifa~dtfyyv~ldhqsss~vsARklm~p~~~~yp~sA~si~anelllaYQnkGifV 1151 (1265)
T KOG0976|consen 1073 FSRTAKLKVP-EPLSFIESEPYGFIFAFDTFYYVELDHQSSSGVSARKLMDPPNPRYPGSAISIGANELLLAYQNKGIFV 1151 (1265)
T ss_pred hhhcccccCC-CchhhhhcCcceEEEecceEEEEeecccCCCCCchhhhcCCCCCCCCcchhhccHHHHHHHhhccCeEE
Confidence 3333345566 34444444443 444555433 33454443 223455554332232 33467789999999999999
Q ss_pred cCCCCcccCcceeecCCCceEEEeCCeEEEEcCCeeEEEEcc
Q 001851 222 DQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLR 263 (1004)
Q Consensus 222 ~~~G~~~~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~ 263 (1004)
+..|.-++..+|.|+.+|..++|..|++..+.++.|+|+.+.
T Consensus 1152 nl~Geqsrn~siewekmp~ef~YtspilyiVhddsiei~~is 1193 (1265)
T KOG0976|consen 1152 NLSGEQSRNTSIEWEKMPGEFTYTSPILYIVHDDSIEIHPIS 1193 (1265)
T ss_pred ecccccCCccccccccCCCCccccCceEEEeccCCccccccC
Confidence 999988877899999999999999999999999999999875
No 33
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=96.94 E-value=0.00031 Score=83.94 Aligned_cols=230 Identities=20% Similarity=0.349 Sum_probs=155.7
Q ss_pred cCCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 13 SNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 13 ~~~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
.++.+.|.|++.||.++.+||..|. ..++..++. ..|.+ ...+.-.|+.+++..+.+.+
T Consensus 637 k~~~se~~~aa~~g~n~~~~t~~gl-~lld~s~q~--------------k~~~~------i~~rrfqq~~~le~~n~l~t 695 (953)
T KOG0587|consen 637 KRFNSEILCAALWGVNLLVGTESGL-MLLDRSGQG--------------KVYPL------INRRRFQQMDVLEGLNVLVT 695 (953)
T ss_pred HhhhhhHHHHHhcCcceeecccccc-eeeccccCc--------------ccCCc------ccchhcccccccCCcceeEE
Confidence 4556789999999999999999994 555544432 12322 34567888999999999999
Q ss_pred eeC-c--eEEEeCCCCccc-----ccccCCCCcEEEEe-----cCC------CcEEEEEECCeEEEEEecCC--CceeEe
Q 001851 93 LSE-S--IAFHRLPNLETI-----AVLTKAKGANVYSW-----DDR------RGFLCFARQKRVCIFRHDGG--RGFVEV 151 (1004)
Q Consensus 93 l~d-~--v~~~~L~~l~~~-----~~i~~~kg~~~f~~-----~~~------~~~l~V~~kkki~l~~~~~~--~~f~~~ 151 (1004)
+++ . +.+|.++.+... ..+++..|-+.+.. +-. -.+++++-+-.+.+|-|... +.|...
T Consensus 696 is~~~~~~~~~y~s~~~~k~l~~d~e~ek~~~~~~~~~~~~~~~~~~~k~~~ik~l~is~~~s~evy~~apk~~~k~~~~ 775 (953)
T KOG0587|consen 696 ISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCIHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFMAF 775 (953)
T ss_pred EeccccccceecchHHhhhhhhcCchhhhhccchhhhhhhcchhhhHHHHHHHHHhheeccccceeeecCCchHHHHHhh
Confidence 999 2 888887654211 11222222222111 100 13589999999999999742 234444
Q ss_pred eee-ecCCCceEEEec---CC--eEEEEEcCceEEEEcCCCCcccccCCC---CCCCCEEEE-ccC--C-eEEEEeCCeE
Q 001851 152 KDF-GVPDTVKSMSWC---GE--NICIAIRKGYMILNATNGALSEVFPSG---RIGPPLVVS-LLS--G-ELLLGKENIG 218 (1004)
Q Consensus 152 kEi-~l~d~~~~l~~~---~~--~i~v~~~~~y~lidl~~~~~~~L~~~~---~~~~p~i~~-~~~--~-E~Ll~~~~~g 218 (1004)
+.+ .++..+..+... +. .+..|+..+|..+|+..+...++.++. ....|.+.. +++ + +.|+|+++-+
T Consensus 776 ~s~~~~~~~~~~~d~~~ee~~~~~v~~gs~~~~~~~~~~~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~l~~~~~e~ 855 (953)
T KOG0587|consen 776 KSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSITPHAIIILPNTDGMELLLCYEDEG 855 (953)
T ss_pred hhhhhhcccchhccchhhcCceEEEEecCcccccccccCCCCCCCCcCCcchhhcccceeEecCCCcchHHHhhhhhccc
Confidence 543 455666554433 33 456677899999999999888877654 223444333 332 2 5578999999
Q ss_pred EEEcCCCCcccCcceeecCCCceEEEe-CCeEEEEcCCeeEEEEcc
Q 001851 219 VFVDQNGKLLQADRICWSEAPIAVIIQ-KPYAIALLPRRVEVRSLR 263 (1004)
Q Consensus 219 vfv~~~G~~~~~~~i~w~~~P~~i~~~-~PYll~~~~~~ieV~~l~ 263 (1004)
+.++..|+....-..+|...|+++++. .--+.+..++.++|++..
T Consensus 856 ~~~~~~~~~~k~v~~~~~~~~Ss~a~~~~~n~~g~~~ka~e~~s~e 901 (953)
T KOG0587|consen 856 VYVNTYGRITKDVVLQWGEMPTSVAYIRSNQIMGWGEKAIEIRSVE 901 (953)
T ss_pred ccccCccchHHHHHHhcCCCCCcceeeecccccccCcccceeeccc
Confidence 999999987655567999999998764 567788888899999874
No 34
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.88 E-value=0.69 Score=50.60 Aligned_cols=233 Identities=9% Similarity=0.126 Sum_probs=127.4
Q ss_pred EEEEEEe--CCEEEE-EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-
Q 001851 19 IDAVASY--GLKILL-GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS- 94 (1004)
Q Consensus 19 I~ci~~~--~~~L~i-Gt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~- 94 (1004)
+.+++.. ++.+|+ |..+|.|.+|+..... ..+.+.. ...+..+.+.|..+.+++.+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------------~~~~~~~--~~~~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------------VIGTLPS--GPDPELFALHPNGKILYIANE 92 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCc------------------EEEeccC--CCCccEEEECCCCCEEEEEcC
Confidence 3444433 456754 6788999999865321 1111111 22345677777777666554
Q ss_pred -Cc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEec--CCeE
Q 001851 95 -ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENI 170 (1004)
Q Consensus 95 -d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i 170 (1004)
|+ +.+|++.+.+.+..+........++++++...++++....-.++.++.. .......+..+..|.+++|. |..+
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNVLVDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEEEcCCCccEEEECCCCCEE
Confidence 24 9999987755444333223345677777766777765433222223321 22233344456677888886 4567
Q ss_pred EEEE--cCceEEEEcCCCCcccccCC---C---CCCCCE-EEEccCCeEE-EEe--CCeEEEEcCC-CCcccCcceeecC
Q 001851 171 CIAI--RKGYMILNATNGALSEVFPS---G---RIGPPL-VVSLLSGELL-LGK--ENIGVFVDQN-GKLLQADRICWSE 237 (1004)
Q Consensus 171 ~v~~--~~~y~lidl~~~~~~~L~~~---~---~~~~p~-i~~~~~~E~L-l~~--~~~gvfv~~~-G~~~~~~~i~w~~ 237 (1004)
+++. .....++|+.++....-++. + ....|. +..-+++.++ ++. ++....+|.. |+.. ..+.-..
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~ 249 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--DYLLVGQ 249 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--EEEEeCC
Confidence 6665 35688899998864322211 1 011232 3334556553 332 3333344543 3322 1222233
Q ss_pred CCceEEEe--CCeEEEEc--CCeeEEEEccCCCceeEEEeeC
Q 001851 238 APIAVIIQ--KPYAIALL--PRRVEVRSLRVPYALIQTIVLQ 275 (1004)
Q Consensus 238 ~P~~i~~~--~PYll~~~--~~~ieV~~l~~~~~lvQti~l~ 275 (1004)
.|..+.+. ..+|++.. .+.|.|+++. ++..++++.+.
T Consensus 250 ~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~-~~~~~~~~~~~ 290 (300)
T TIGR03866 250 RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA-ALKVIKSIKVG 290 (300)
T ss_pred CcceEEECCCCCEEEEEcCCCCeEEEEECC-CCcEEEEEEcc
Confidence 45566663 35776643 4789999996 68888988764
No 35
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.78 E-value=0.035 Score=62.27 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=104.2
Q ss_pred CcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 17 PKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 17 ~~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
--|.|.++.. +-++-|.=||.|..|+.....+ ..+++ -+..||+.+..+|...++++.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-------------~v~el------nhg~pVe~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-------------RVVEL------NHGCPVESVLALPSGSLIASA 214 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-------------eeEEe------cCCCceeeEEEcCCCCEEEEc
Confidence 3477777765 3578899999999999775321 01111 247799999999987777766
Q ss_pred eCc-eEEEeCCC-Cccccccc-CCCCcEEEEecCCCcE-EEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecC--
Q 001851 94 SES-IAFHRLPN-LETIAVLT-KAKGANVYSWDDRRGF-LCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG-- 167 (1004)
Q Consensus 94 ~d~-v~~~~L~~-l~~~~~i~-~~kg~~~f~~~~~~~~-l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~-- 167 (1004)
++. |.+|+|.+ -+.+.... ..|-++|.++..+..+ +..+..+.+-+|..+ .++.+....+|.++.+|+...
T Consensus 215 gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t---~~Kvv~s~~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 215 GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT---NYKVVHSWKYPGPVLSIAVSPDD 291 (487)
T ss_pred CCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc---ceEEEEeeecccceeeEEecCCC
Confidence 664 99999874 33333332 6788999888765555 455689999999966 477777788999999998874
Q ss_pred CeEEEEEcCceEEEE
Q 001851 168 ENICIAIRKGYMILN 182 (1004)
Q Consensus 168 ~~i~v~~~~~y~lid 182 (1004)
..+++|..++-..+-
T Consensus 292 ~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEEEecccceeeee
Confidence 578888887655443
No 36
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.78 E-value=0.00051 Score=67.32 Aligned_cols=99 Identities=32% Similarity=0.414 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccc
Q 001851 505 AILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 584 (1004)
Q Consensus 505 ~~vDT~Ll~~yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~ 584 (1004)
..+.|.|+.+|++.++.+.+..|++..+..|++.+.+.+.+++.+.+.+.+|.+.|+|++|++++.++.+
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~---------- 111 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKD---------- 111 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHC----------
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHcc----------
Confidence 3588999999999987578899999877799999999999999999999999999999999997433221
Q ss_pred cccCCChHhHHHHhcccCCCCchhHHhhchhhhccCc
Q 001851 585 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCP 621 (1004)
Q Consensus 585 ~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~p 621 (1004)
.+.+++|..+. .+.+++..-....++..|
T Consensus 112 ------~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 112 ------YEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp ------SCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred ------HHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 12234666544 334566555666665544
No 37
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.76 E-value=0.46 Score=54.00 Aligned_cols=240 Identities=14% Similarity=0.236 Sum_probs=141.8
Q ss_pred eCCEEEEEeC----CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee--Cc-e
Q 001851 25 YGLKILLGCS----DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS--ES-I 97 (1004)
Q Consensus 25 ~~~~L~iGt~----~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~--d~-v 97 (1004)
.++.||+.++ .|.|..|.+..... ......+... ....-..|.+.|....|++-. ++ +
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g--------------~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTG--------------TLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSV 111 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTT--------------EEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcc--------------eeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeE
Confidence 5679999988 57999999876421 2233322222 234555788888877777653 24 9
Q ss_pred EEEeCCCCcccc----c-----------ccCCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCC-ceeEeeeeec--C
Q 001851 98 AFHRLPNLETIA----V-----------LTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGR-GFVEVKDFGV--P 157 (1004)
Q Consensus 98 ~~~~L~~l~~~~----~-----------i~~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~-~f~~~kEi~l--~ 157 (1004)
.+|++.+-..+. . ......++.+.++++...++|+ ...+|.+|.++... .+.....+.+ .
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 999986521111 0 1233467788888887778876 56789999998543 3555455544 4
Q ss_pred CCceEEEec--CCeEEEEEc--CceEEEEcC--CCCcc-----cccCCCCCC--CCE-EEEccCCeEEEEe----CCeEE
Q 001851 158 DTVKSMSWC--GENICIAIR--KGYMILNAT--NGALS-----EVFPSGRIG--PPL-VVSLLSGELLLGK----ENIGV 219 (1004)
Q Consensus 158 d~~~~l~~~--~~~i~v~~~--~~y~lidl~--~~~~~-----~L~~~~~~~--~p~-i~~~~~~E~Ll~~----~~~gv 219 (1004)
..|+.|+|. +..++|.+. +...++++. +|... ..++.+-.. .|. |..-+++.||.+. |.+.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 679999998 457888875 567777777 55322 222222111 233 3334678887653 34556
Q ss_pred E-Ec-CCCCcccCcceee-cCCCceEEE--eCCeEEEEcC--CeeEEEEcc-CCCceeE---EEeeCCccc
Q 001851 220 F-VD-QNGKLLQADRICW-SEAPIAVII--QKPYAIALLP--RRVEVRSLR-VPYALIQ---TIVLQNVRH 279 (1004)
Q Consensus 220 f-v~-~~G~~~~~~~i~w-~~~P~~i~~--~~PYll~~~~--~~ieV~~l~-~~~~lvQ---ti~l~~~~~ 279 (1004)
| +| .+|.......+.- ...|..+++ ..-||++... +.|.|+.+. +++.+.. .+.++.+.+
T Consensus 272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp EEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred EEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 5 33 3465543223332 235999988 5678888765 689998873 2444433 355555433
No 38
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.76 E-value=0.0099 Score=57.96 Aligned_cols=94 Identities=27% Similarity=0.339 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhc-CCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccc
Q 001851 506 ILDTALLQALLLTGQSSAALELLK-GLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 584 (1004)
Q Consensus 506 ~vDT~Ll~~yl~~~~~~~l~~ll~-~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~ 584 (1004)
.+-|.|+.+|++.++ ..+.+|++ ..+..|++.+...+.+++.|.+.+.+|.+.|+|.+|++++.+-.
T Consensus 42 ~~~~~li~ly~~~~~-~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~----------- 109 (140)
T smart00299 42 ALQTKLIELYAKYDP-QKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHL----------- 109 (140)
T ss_pred hHHHHHHHHHHHHCH-HHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcc-----------
Confidence 377889999998864 55668888 77889999999999999999999999999999999999997621
Q ss_pred cccCCChHhHHHHhcccCCCCchhHHhhchhhh
Q 001851 585 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVL 617 (1004)
Q Consensus 585 ~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll 617 (1004)
..++.+++|.++ ..+.+++..-+...+
T Consensus 110 ----~d~~~a~~~~~~--~~~~~lw~~~~~~~l 136 (140)
T smart00299 110 ----GNYEKAIEYFVK--QNNPELWAEVLKALL 136 (140)
T ss_pred ----cCHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 124678888875 244455444443333
No 39
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.74 E-value=0.16 Score=56.89 Aligned_cols=254 Identities=15% Similarity=0.178 Sum_probs=146.0
Q ss_pred CcEEEEEEeCC--EEEEEeCCCcEEEEcCCCCCCC-CCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 17 PKIDAVASYGL--KILLGCSDGSLKIYSPGSSESD-RSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 17 ~~I~ci~~~~~--~L~iGt~~G~l~~y~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
..|+|++...+ ++|=+..+|+|..|.+...... ...|+| -.++ ..+...+.....+.+-|..+.+.++ +..++.
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k-~~~~~~k~~r~~h~keil~~avS~D-gkylat 219 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLK-SHGNPLKESRKGHVKEILTLAVSSD-GKYLAT 219 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhh-hccCCCCcccccccceeEEEEEcCC-CcEEEe
Confidence 46778888865 9999999999999997654321 001111 0011 0111111111123456777777776 445555
Q ss_pred eC-c--eEEEeCCCCcccccccCCCC-cEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeee-eecCCCceEEEec-
Q 001851 94 SE-S--IAFHRLPNLETIAVLTKAKG-ANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD-FGVPDTVKSMSWC- 166 (1004)
Q Consensus 94 ~d-~--v~~~~L~~l~~~~~i~~~kg-~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kE-i~l~d~~~~l~~~- 166 (1004)
++ + |.+|+..+++++......+| +...|+-.+...+..+ ..+++-+|.... +..+.. +--++.+.+|.-.
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---LSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH---hHHHHHHhCCccceeeechhc
Confidence 55 2 88999888888776544444 3445665555666665 778888888763 222222 3346777777554
Q ss_pred -CCeEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEeCCeE-----------EEE--cCCCCcccCc
Q 001851 167 -GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIG-----------VFV--DQNGKLLQAD 231 (1004)
Q Consensus 167 -~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~~~~g-----------vfv--~~~G~~~~~~ 231 (1004)
+..++||-+ +...+..+ ..+++-+|..+....-+++.+++++|+.+.++-. +|+ ..+|-...-.
T Consensus 297 reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~ 375 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD 375 (479)
T ss_pred ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence 568899954 56666777 4445555655554456788889999998876532 232 2344211111
Q ss_pred ce---eecCCCceEEEeCCeEEEEcCCeeEEEEccCC---CceeEEEeeCCc
Q 001851 232 RI---CWSEAPIAVIIQKPYAIALLPRRVEVRSLRVP---YALIQTIVLQNV 277 (1004)
Q Consensus 232 ~i---~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~---~~lvQti~l~~~ 277 (1004)
+. .|-.....+.+..-+..+-.++++-+.-+.+. -++++.+++.+.
T Consensus 376 ~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~Gf 427 (479)
T KOG0299|consen 376 PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGF 427 (479)
T ss_pred ccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccE
Confidence 22 26544333444443333334467777766432 267777777653
No 40
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=0.043 Score=58.32 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=96.2
Q ss_pred CcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-
Q 001851 17 PKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS- 94 (1004)
Q Consensus 17 ~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~- 94 (1004)
..|.|.+..+ ..+|+|+-||.|..|++...... + .+-+..+|..|.-.+..+.+++=+
T Consensus 55 ~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~---------------~-----igth~~~i~ci~~~~~~~~vIsgsW 114 (323)
T KOG1036|consen 55 APLLDCAFADESTIVTGGLDGQVRRYDLNTGNED---------------Q-----IGTHDEGIRCIEYSYEVGCVISGSW 114 (323)
T ss_pred CceeeeeccCCceEEEeccCceEEEEEecCCcce---------------e-----eccCCCceEEEEeeccCCeEEEccc
Confidence 3565555554 68999999999999998754321 1 223577999999998777666444
Q ss_pred Cc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecCCeEEE
Q 001851 95 ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICI 172 (1004)
Q Consensus 95 d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~~i~v 172 (1004)
|+ |.+|+--.=....+....| ..||.+....+|+|| ..+++.+|.+...+.+.+.+|-.+.-.+++++.+
T Consensus 115 D~~ik~wD~R~~~~~~~~d~~k--kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~------ 186 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFDQGK--KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALV------ 186 (323)
T ss_pred CccEEEEeccccccccccccCc--eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEe------
Confidence 43 9999954311112222223 678888888899996 7889999999764455566777788788888844
Q ss_pred EEcCceEEEEcCCCCccccc
Q 001851 173 AIRKGYMILNATNGALSEVF 192 (1004)
Q Consensus 173 ~~~~~y~lidl~~~~~~~L~ 192 (1004)
-+..+|.+=.+...-..+.+
T Consensus 187 pn~eGy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGRVAVEYF 206 (323)
T ss_pred cCCCceEEEeecceEEEEcc
Confidence 34445554444433333333
No 41
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.23 Score=59.99 Aligned_cols=180 Identities=17% Similarity=0.225 Sum_probs=120.2
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 15 CSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 15 ~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
....|.|++.+++++..||.++++..|.+...... -.+.| | --||+.+.+.-.+++++.=+
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~--------------~iL~R----f-tlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED--------------TILAR----F-TLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCCCcc--------------ceeee----e-eccceEEEEecCCcEEEeec
Confidence 45678999999999999999999999998765432 12222 2 23899999888877777766
Q ss_pred C--ceEEEeCCCCcccccccC-CCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEe------eeeecCCCceEEE
Q 001851 95 E--SIAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEV------KDFGVPDTVKSMS 164 (1004)
Q Consensus 95 d--~v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~------kEi~l~d~~~~l~ 164 (1004)
| .|++.++.+......+.. .-.+..+..+++...|+|+ ..+++.+|.++.+.....+ -|+.....+..++
T Consensus 116 dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 116 DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 6 388888766543333222 2346677788888888886 8999999998754211111 1334455666789
Q ss_pred ec---CCeEEEEEcCceEEEEcCCCCcccccCCCC-CC-CCEEEEccCCeEEEE
Q 001851 165 WC---GENICIAIRKGYMILNATNGALSEVFPSGR-IG-PPLVVSLLSGELLLG 213 (1004)
Q Consensus 165 ~~---~~~i~v~~~~~y~lidl~~~~~~~L~~~~~-~~-~p~i~~~~~~E~Ll~ 213 (1004)
|. |..++++.++...+|+..+.+..--+.... +. -..+.+-+.|++|-+
T Consensus 196 W~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred ecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 98 356777788889999998876543222211 11 233455567777654
No 42
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.62 E-value=0.062 Score=55.14 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=105.1
Q ss_pred CCcccccccccCCCCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEE
Q 001851 3 HNAFDSLELISNCSPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSM 81 (1004)
Q Consensus 3 ~~~f~~~~l~~~~~~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI 81 (1004)
..+|.+..+.+.-- ..+++++.| +.|||+|..+.|-+|++..... .+.-+|.. -.+|.+|
T Consensus 5 ~H~F~sQ~v~~~~~-EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~----------------~~~~~F~T--v~~V~~l 65 (215)
T PF14761_consen 5 CHPFGSQNVVPCEQ-EPTAVCCGGPDALFVAASGCKVEVYDLEQEEC----------------PLLCTFST--VGRVLQL 65 (215)
T ss_pred ecccCCceeecccc-CcceeeccCCceEEEEcCCCEEEEEEcccCCC----------------ceeEEEcc--hhheeEE
Confidence 35677776665442 555666668 8999999999999999983221 22223332 4689999
Q ss_pred EEecccCceeeeeC-c-------eEEEe-C--C--CCccc-----------------------ccccCCCCcEEEEecCC
Q 001851 82 EVLASRQLLLSLSE-S-------IAFHR-L--P--NLETI-----------------------AVLTKAKGANVYSWDDR 125 (1004)
Q Consensus 82 ~~l~~~~~ll~l~d-~-------v~~~~-L--~--~l~~~-----------------------~~i~~~kg~~~f~~~~~ 125 (1004)
...+.++.+++|-+ + +.+|- . . +-+++ -.++-...+.+++..+-
T Consensus 66 ~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~ 145 (215)
T PF14761_consen 66 VYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPV 145 (215)
T ss_pred EeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCC
Confidence 99999999999954 1 23322 1 0 00111 01233446667777778
Q ss_pred CcEEEEEECCeEEEEEecCC----Cc--eeEeee----eecCCCceEEEecCCeEEEEEcCceEEEEc
Q 001851 126 RGFLCFARQKRVCIFRHDGG----RG--FVEVKD----FGVPDTVKSMSWCGENICIAIRKGYMILNA 183 (1004)
Q Consensus 126 ~~~l~V~~kkki~l~~~~~~----~~--f~~~kE----i~l~d~~~~l~~~~~~i~v~~~~~y~lidl 183 (1004)
+|.|+||.++++.||++... .. |-...+ +-..-.|+-+++++++|.+.+..+-.++-+
T Consensus 146 tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 146 TGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred CCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 89999999999999997531 11 112111 112235788999999999999988777655
No 43
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.55 E-value=0.7 Score=52.08 Aligned_cols=228 Identities=13% Similarity=0.148 Sum_probs=130.3
Q ss_pred cEEEEEEe--CCEEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 18 KIDAVASY--GLKILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 18 ~I~ci~~~--~~~L~iGt~-~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
...+++.. +++||+|+. +|.|..|++.+.. ......... . ......|.+.|..+.+++.+
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g---------------~l~~~~~~~-~-~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG---------------ALTFAAESP-L-PGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCC---------------ceEEeeeec-C-CCCceEEEECCCCCEEEEEE
Confidence 34445443 678999864 7889999886321 122222211 1 22457888899888888776
Q ss_pred C--c-eEEEeCCCC----cccccccCCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEe--e--eeecCCCce
Q 001851 95 E--S-IAFHRLPNL----ETIAVLTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEV--K--DFGVPDTVK 161 (1004)
Q Consensus 95 d--~-v~~~~L~~l----~~~~~i~~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~--k--Ei~l~d~~~ 161 (1004)
. + |.+|++.+. +.+..+....+++.++++++...++|+ ...+|.+|.+..+..+... . .+.....|+
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 4 3 999987532 122222333567788888877777776 4578999998743223211 1 233456788
Q ss_pred EEEecC--CeEEEEEc--CceEEEEcCC--CCccc-----ccCCCCC--CCCE-EEEccCCeEEEEeC----CeEEE-Ec
Q 001851 162 SMSWCG--ENICIAIR--KGYMILNATN--GALSE-----VFPSGRI--GPPL-VVSLLSGELLLGKE----NIGVF-VD 222 (1004)
Q Consensus 162 ~l~~~~--~~i~v~~~--~~y~lidl~~--~~~~~-----L~~~~~~--~~p~-i~~~~~~E~Ll~~~----~~gvf-v~ 222 (1004)
.++|.. ..+++++. +.-.++|+.. +.... ..|.+.. ..|. +..-+++.+|.+.+ ...+| ++
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 899874 58888875 5677788873 33211 1221111 1122 33346777765432 23444 34
Q ss_pred CCCCc-ccCcceeecCCCceEEEe--CCeEEEEcC--CeeEEEEc
Q 001851 223 QNGKL-LQADRICWSEAPIAVIIQ--KPYAIALLP--RRVEVRSL 262 (1004)
Q Consensus 223 ~~G~~-~~~~~i~w~~~P~~i~~~--~PYll~~~~--~~ieV~~l 262 (1004)
.+|.. .....+.....|..+.+. ..||++... +.|.|+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 259 EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 44421 112333444467777664 568887664 57888876
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.50 E-value=0.31 Score=55.44 Aligned_cols=176 Identities=10% Similarity=0.134 Sum_probs=113.9
Q ss_pred CCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 16 SPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 16 ~~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
.++|.++++++ +.|+.-.=|-+|.+..+..+.-.. ...+ .+..+|. -+.+.+..+++++.|
T Consensus 363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~-------------~~~~----~lg~QP~-~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK-------------SEVV----KLGSQPK-GLAVLSDGGTAVVAC 424 (603)
T ss_pred cceEEEEeecCCCcEEEEecCCeEEEEecccCcccc-------------ccee----ecCCCce-eEEEcCCCCEEEEEe
Confidence 57899999999 788777777778887776543211 0001 1334455 777787777888777
Q ss_pred C-ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecC--CeE
Q 001851 95 E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG--ENI 170 (1004)
Q Consensus 95 d-~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~--~~i 170 (1004)
+ +|.++. ++..+..++..-..++.+++++...+||+ ...++.+|.+.++..-...+.......|+.+++.. .++
T Consensus 425 ~~~iv~l~--~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 425 ISDIVLLQ--DQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred cCcEEEEe--cCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 7 466655 22323333334456788999998999998 66789999998543222334566678899999984 466
Q ss_pred EEEEc-CceEEEEcCCCCcc---cccCCCCCCCCEEEEccCCeEEEEe
Q 001851 171 CIAIR-KGYMILNATNGALS---EVFPSGRIGPPLVVSLLSGELLLGK 214 (1004)
Q Consensus 171 ~v~~~-~~y~lidl~~~~~~---~L~~~~~~~~p~i~~~~~~E~Ll~~ 214 (1004)
..|.. +...++|+.++++. ..|.+.+ -.++.|-++++ +++.
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtak--I~~~aWsP~n~-~vAT 547 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAK--INCVAWSPNNK-LVAT 547 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeee--EEEEEeCCCce-EEEe
Confidence 66655 67888999988652 2334332 23455566655 4444
No 45
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.43 E-value=2.8 Score=49.02 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=48.4
Q ss_pred EEEEEecCCCceeEe--eeeecCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEE
Q 001851 137 VCIFRHDGGRGFVEV--KDFGVPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELL 211 (1004)
Q Consensus 137 i~l~~~~~~~~f~~~--kEi~l~d~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~L 211 (1004)
-.+|+...+ .++.+ ..|+++..+.+.++. ++.+++|+. +...++|...+.+.-. . .......+.|-+++.++
T Consensus 238 ~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 238 SCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ecccceEEEEcCCCcEE
Confidence 468888754 35443 468889999999987 479999997 5678889887744322 1 11123346666777665
Q ss_pred EE
Q 001851 212 LG 213 (1004)
Q Consensus 212 l~ 213 (1004)
+.
T Consensus 315 ~V 316 (545)
T PF11768_consen 315 VV 316 (545)
T ss_pred EE
Confidence 43
No 46
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.073 Score=64.12 Aligned_cols=160 Identities=18% Similarity=0.289 Sum_probs=106.8
Q ss_pred ccccccccCCCCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEE
Q 001851 6 FDSLELISNCSPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEV 83 (1004)
Q Consensus 6 f~~~~l~~~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~ 83 (1004)
++..-|+.++...|.|++..+ +.+..|.+|=.|.+.+....+. ++..++ ++.||.+|..
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~------------------~~~lrg-h~apVl~l~~ 146 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ------------------EKVLRG-HDAPVLQLSY 146 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch------------------heeecc-cCCceeeeeE
Confidence 344557788877777666665 5999999999888877665432 112232 4779999999
Q ss_pred ecccCceeeee-Cc-eEEEeCCCCccccccc---------CCCCcEEEEecCCCcEEEE-EECCeEEEEEecCCC-ceeE
Q 001851 84 LASRQLLLSLS-ES-IAFHRLPNLETIAVLT---------KAKGANVYSWDDRRGFLCF-ARQKRVCIFRHDGGR-GFVE 150 (1004)
Q Consensus 84 l~~~~~ll~l~-d~-v~~~~L~~l~~~~~i~---------~~kg~~~f~~~~~~~~l~V-~~kkki~l~~~~~~~-~f~~ 150 (1004)
.|+.++|.+.+ || |.+|++.+.....++. ..+-|+..++.++.|.+++ ++++.|.+|+..+.. +|..
T Consensus 147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 99999998764 56 9999997753322221 1344556677888777655 599999999976422 3433
Q ss_pred eeeeecCCCceEEEec--CCeEEEEEc-CceEEEEcCC
Q 001851 151 VKDFGVPDTVKSMSWC--GENICIAIR-KGYMILNATN 185 (1004)
Q Consensus 151 ~kEi~l~d~~~~l~~~--~~~i~v~~~-~~y~lidl~~ 185 (1004)
+.=........++|. |.+|..++. ++..+-|..+
T Consensus 227 -r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 -RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 211122336678886 667777765 5677778876
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.39 E-value=1.5 Score=52.25 Aligned_cols=112 Identities=14% Similarity=0.268 Sum_probs=78.2
Q ss_pred CCCceeEEEEecccCceeeeeC-c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCC-----C
Q 001851 74 SKKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGG-----R 146 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~-----~ 146 (1004)
++..|..|.+.|..-+|+++-+ | ..+..+..-..++.....+++.+++++++...++|+..+-+.+|+..+. .
T Consensus 54 ~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~ 133 (893)
T KOG0291|consen 54 TRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFN 133 (893)
T ss_pred cCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccC
Confidence 4679999999999888888877 5 3333433322334456678999999999888899999999999997531 1
Q ss_pred ceeEeeeeecC-CCceEEEecCC--eEEEEEcC-ceEEEEcCC
Q 001851 147 GFVEVKDFGVP-DTVKSMSWCGE--NICIAIRK-GYMILNATN 185 (1004)
Q Consensus 147 ~f~~~kEi~l~-d~~~~l~~~~~--~i~v~~~~-~y~lidl~~ 185 (1004)
.|+..+.+..+ |.++++.|..| .+.+|++. .-.++.+..
T Consensus 134 pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 134 PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG 176 (893)
T ss_pred cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence 35566665443 78999999864 45565653 345555554
No 48
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=1.5 Score=48.03 Aligned_cols=229 Identities=13% Similarity=0.186 Sum_probs=134.6
Q ss_pred CcEEEEEEeC--CEEEEEeCC---CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCcee
Q 001851 17 PKIDAVASYG--LKILLGCSD---GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~---G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll 91 (1004)
..++-++... ++||++-.+ |.+-.|.++.++. ..++..... ...++=..+.+.+...+++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G--------------~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf 104 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG--------------RLTFLNRQT-LPGSPPCYVSVDEDGRFVF 104 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC--------------eEEEeeccc-cCCCCCeEEEECCCCCEEE
Confidence 3455555554 579998776 7788998886532 122222212 2345558899888876666
Q ss_pred eee-C-c-eEEEeCCCC---ccc-cccc----------CCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEee
Q 001851 92 SLS-E-S-IAFHRLPNL---ETI-AVLT----------KAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVK 152 (1004)
Q Consensus 92 ~l~-d-~-v~~~~L~~l---~~~-~~i~----------~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~k 152 (1004)
+-. . + |.++.+.+. ..+ ..+. ..-.|++.-++++...+|+. ...||.+|++.+| .+....
T Consensus 105 ~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg-~L~~~~ 183 (346)
T COG2706 105 VANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG-KLTPAD 183 (346)
T ss_pred EEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC-cccccc
Confidence 543 2 3 999998542 111 1111 11226666677776677776 6679999999855 454444
Q ss_pred eeec--CCCceEEEecCC-eE-EEEEc--CceEEEEcCC--CCccccc-----CCC---CCCCCEEEEccCCeEEEEeC-
Q 001851 153 DFGV--PDTVKSMSWCGE-NI-CIAIR--KGYMILNATN--GALSEVF-----PSG---RIGPPLVVSLLSGELLLGKE- 215 (1004)
Q Consensus 153 Ei~l--~d~~~~l~~~~~-~i-~v~~~--~~y~lidl~~--~~~~~L~-----~~~---~~~~p~i~~~~~~E~Ll~~~- 215 (1004)
+..+ ...|+.|.|..+ .+ ++.+. +...++..+. |...+|- |.+ .....-|...+++.||.+.|
T Consensus 184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 4333 357999999843 44 44433 4455544444 4433332 221 11222344457899998764
Q ss_pred ---CeEEE-EcCCCCcccCcceee-c--C-CCceEEEe--CCeEEEEcC--CeeEEEEcc
Q 001851 216 ---NIGVF-VDQNGKLLQADRICW-S--E-APIAVIIQ--KPYAIALLP--RRVEVRSLR 263 (1004)
Q Consensus 216 ---~~gvf-v~~~G~~~~~~~i~w-~--~-~P~~i~~~--~PYll~~~~--~~ieV~~l~ 263 (1004)
.+++| |+.+|... ..+.| + + .|+.+.+. .-||++... +.|.|+.+.
T Consensus 264 g~dsI~~f~V~~~~g~L--~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 264 GHDSIAVFSVDPDGGKL--ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCeEEEEEEcCCCCEE--EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 56677 68776533 22222 2 2 48876654 579999987 568888873
No 49
>PTZ00420 coronin; Provisional
Probab=96.30 E-value=1.5 Score=52.76 Aligned_cols=114 Identities=18% Similarity=0.354 Sum_probs=77.4
Q ss_pred CCCceeEEEEecc-cCceeeeeC-c-eEEEeCCCCc--------ccccc-cCCCCcEEEEecCCCcEE-EEE-ECCeEEE
Q 001851 74 SKKPILSMEVLAS-RQLLLSLSE-S-IAFHRLPNLE--------TIAVL-TKAKGANVYSWDDRRGFL-CFA-RQKRVCI 139 (1004)
Q Consensus 74 ~k~~I~qI~~l~~-~~~ll~l~d-~-v~~~~L~~l~--------~~~~i-~~~kg~~~f~~~~~~~~l-~V~-~kkki~l 139 (1004)
+..+|..|..-|. .++|++.++ + |.+|++++-. ++..+ ...+.++++++++....+ +.+ ..+.|.+
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 4679999999986 467777664 5 9999987521 11112 224567788888765544 444 5688999
Q ss_pred EEecCCCceeEeeeeecCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCccc
Q 001851 140 FRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSE 190 (1004)
Q Consensus 140 ~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~ 190 (1004)
|.+..+. ....+..++.+.+++|. |+.++.++. +...++|+.++....
T Consensus 153 WDl~tg~---~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 153 WDIENEK---RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EECCCCc---EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9887442 22345557789999997 566666664 568999999986543
No 50
>PTZ00420 coronin; Provisional
Probab=96.28 E-value=0.89 Score=54.73 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCcee
Q 001851 15 CSPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (1004)
Q Consensus 15 ~~~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll 91 (1004)
-...|.|++.+ ++.|+.|+.||.|.+|++....... .. .......+. .+..+|..|..-|....++
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~---------~~-i~~p~~~L~-gH~~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV---------KE-IKDPQCILK-GHKKKISIIDWNPMNYYIM 141 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc---------cc-cccceEEee-cCCCcEEEEEECCCCCeEE
Confidence 34679999887 3588999999999999987432100 00 001111222 2467899999999776544
Q ss_pred -eee-Cc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeecCCCc-eE-EEe
Q 001851 92 -SLS-ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPDTV-KS-MSW 165 (1004)
Q Consensus 92 -~l~-d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l~d~~-~~-l~~ 165 (1004)
+-+ |+ |.+|++.+.+....+.....+..++++++...++++. .++|.||....+. .+.++...... .+ ..|
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~---~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE---IASSFHIHDGGKNTKNIW 218 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc---EEEEEecccCCceeEEEE
Confidence 444 55 9999997655444444345677888888766676664 5789999876432 22344333322 12 223
Q ss_pred c------CCeEEE-EEcC----ceEEEEcCC
Q 001851 166 C------GENICI-AIRK----GYMILNATN 185 (1004)
Q Consensus 166 ~------~~~i~v-~~~~----~y~lidl~~ 185 (1004)
. ++.|+. |..+ .+.+.|+.+
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 2 234444 4332 588888875
No 51
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=5.1 Score=49.99 Aligned_cols=238 Identities=15% Similarity=0.125 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhcCChhhHHhhh-cCC-CcccHHHHHHHHHhcCcHHHHHHHHH-hhccHHHHHHHHHHHhhcccCCCCc
Q 001851 506 ILDTALLQALLLTGQSSAALELL-KGL-NYCDVKICEEILQKKNHYTALLELYK-SNARHREALKLLHELVEESKSNQSQ 582 (1004)
Q Consensus 506 ~vDT~Ll~~yl~~~~~~~l~~ll-~~~-n~c~~~~~~~~L~~~~~~~~L~~Ly~-~~g~~~~AL~ll~~l~~~~~~~~~~ 582 (1004)
+|-..|..+|++.. ...+..++ +.+ ...|++.+-++.++++.|+.++.+.. ...+|.-+|.=+..........++.
T Consensus 542 vl~~sL~dy~~e~~-l~~ie~lIv~le~~sLDld~vlki~kq~~lfd~liYv~~kafNDY~tplvell~~~~~difs~sE 620 (1206)
T KOG2079|consen 542 VLAPSLADYLLEEE-LKYIENLIVTLEPSSLDLDVVLKICKQYNLFDGLIYVNNKAFNDYDTPLVELLSRISNDIFSPSE 620 (1206)
T ss_pred HHHHHHHHHHHhcC-HHHHHhheeecCcccccHHHHHHHHHHhCCcceEEEEeeehhcccccHHHHHHHHhhccccCCcc
Confidence 35566777777765 33444444 333 44599999999999999998886653 4577888876666543333221111
Q ss_pred ccc------------------ccCCChHh----HHHHhc----cc---CCCCchhHHhhchhhhccCccchhccccc---
Q 001851 583 DEH------------------TQKFNPES----IIEYLK----PL---CGTDPMLVLEFSMLVLESCPTQTIELFLS--- 630 (1004)
Q Consensus 583 ~~~------------------~~~~~~~~----~~~yL~----~L---~~~~~~li~~~~~wll~~~p~~~i~if~~--- 630 (1004)
..+ ......+. ..+.++ .+ ...+-+.-+-|.+.+++.||++.+.++..
T Consensus 621 q~~gn~~f~yvs~cLTG~~YP~~~~~ie~~~~V~~el~r~cfS~v~~k~~~e~e~~fPYlrllLk~d~~~flnvls~afd 700 (1206)
T KOG2079|consen 621 QRLGNTIFVYVSYCLTGRFYPFGLHPIEEQGSVSHELLRNCFSSVTTKGNPEEEPAFPYLRLLLKSDPSRFLNVLSEAFD 700 (1206)
T ss_pred ccCCceEEEeeehhhcccccccccCchHhhchhhHHHHHHHhhcCCcCCCCccCcccHHHHHHHhhCHHHHHHHHHHHhh
Confidence 110 00011111 122222 11 12334567789999999999988776542
Q ss_pred ------CC--CChHHHHHHHhhc-Ccc--chhhhHHHHHhcccCCCCcchHHHHHH----HHHHHHHHhhhhhhhhcccC
Q 001851 631 ------GN--IPADLVNSYLKQY-SPS--MQGRYLELMLAMNENSISGNLQNEMVQ----IYLSEVLDWYSDLSAQQKWD 695 (1004)
Q Consensus 631 ------~~--l~~~~vl~~L~~~-~~~--l~~~YLE~li~~~~~~~~~~~h~~L~~----~Yl~~~~~~~~~~~~~~~~~ 695 (1004)
|+ ..+..|++.|-.. .++ ..+.||-++...- ..+ ..|+. .|-..+.+.. ....++
T Consensus 701 ~~~Fsldn~lv~rq~iI~~L~~~mk~e~s~~~~~lifiaq~~-----s~y-rqli~~s~shlq~~vitlc-ss~~hs--- 770 (1206)
T KOG2079|consen 701 ASLFSLDNELVSRQYIIDLLLDAMKDEGSIRVLVLIFIAQSI-----SKY-RQLIKVSNSHLQCVVITLC-SSRVHS--- 770 (1206)
T ss_pred hhhhccchhhhhHHHHHHHHHHHhcccccchhhhHHHHHHHh-----hhh-hHHhhhhHHHHHHHHHhhc-cCcccc---
Confidence 22 4455666655432 222 2455555554310 111 11221 1111122211 000000
Q ss_pred cccchHHHHHHHHHHhhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCC
Q 001851 696 EKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCV 757 (1004)
Q Consensus 696 ~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D 757 (1004)
..+-.-..|...|---...+.+.-+..++..+++...-+||.+.|+|++||+.|+ +.+|
T Consensus 771 --~rEn~~~alesll~lyh~~~de~~il~a~~~~~y~Vl~hi~~k~~kyed~l~~iL-e~n~ 829 (1206)
T KOG2079|consen 771 --IRENSQIALESLLPLYHSRTDENFILEAKEKNFYKVLFHIYKKENKYEDALSLIL-ETND 829 (1206)
T ss_pred --hhHHHHHHHHhhccceeccChHHHHHHhhhcccceeHHHHHhhhhhHHHHHHHHH-Hhhh
Confidence 0000112344433222333566667778888999999999999999999999999 4443
No 52
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.14 E-value=2.1 Score=45.44 Aligned_cols=247 Identities=14% Similarity=0.150 Sum_probs=150.5
Q ss_pred ccccCCCCcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecc
Q 001851 10 ELISNCSPKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS 86 (1004)
Q Consensus 10 ~l~~~~~~~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~ 86 (1004)
..+..-+..|+.++..- +-|+=+..|-++..|.+..... +.+ ..+|.+.+ +..-|+.+.+.+.
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------~~G-~~~r~~~G-HsH~v~dv~~s~d 74 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------KYG-VPVRRLTG-HSHFVSDVVLSSD 74 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------ccC-ceeeeeec-cceEecceEEccC
Confidence 33445566788777664 4577788899999999886532 111 22345555 4668999999999
Q ss_pred cCceeeee-Cc-eEEEeCCCCccccc-ccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceE
Q 001851 87 RQLLLSLS-ES-IAFHRLPNLETIAV-LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKS 162 (1004)
Q Consensus 87 ~~~ll~l~-d~-v~~~~L~~l~~~~~-i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~ 162 (1004)
.+++|.-+ |+ +.+|++.+-++... +...+.+.+++++.+..+||-+ ..|.|.+|...++-.+ .+.+-.-.+-+.+
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHREWVSC 153 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcCcEEE
Confidence 99999876 66 99999977554433 4668899999999988888888 5577888887632222 1222222566788
Q ss_pred EEecC---CeEEEEEc--CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEE--EeCCeEEEEcCCCCcccCcceee
Q 001851 163 MSWCG---ENICIAIR--KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL--GKENIGVFVDQNGKLLQADRICW 235 (1004)
Q Consensus 163 l~~~~---~~i~v~~~--~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll--~~~~~gvfv~~~G~~~~~~~i~w 235 (1004)
+.|.. +-+++... +-..+-|+.+-+...-++-.......+...+++.... +.|...+..|.+-. +....+
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl 230 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSL 230 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEec
Confidence 88873 33444433 4566678877655444432111112233334444432 23445555554221 111122
Q ss_pred cC--CCceEEEe--CCeEEEEcCCeeEEEEccCCCceeEEEeeC
Q 001851 236 SE--APIAVIIQ--KPYAIALLPRRVEVRSLRVPYALIQTIVLQ 275 (1004)
Q Consensus 236 ~~--~P~~i~~~--~PYll~~~~~~ieV~~l~~~~~lvQti~l~ 275 (1004)
+. ...+++|. .+.|.+.+..+|-|.++. ++..|.++.+.
T Consensus 231 ~a~~~v~sl~fspnrywL~~at~~sIkIwdl~-~~~~v~~l~~d 273 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNRYWLCAATATSIKIWDLE-SKAVVEELKLD 273 (315)
T ss_pred cCCCeEeeEEecCCceeEeeccCCceEEEecc-chhhhhhcccc
Confidence 21 22344553 467777778899999995 67777776553
No 53
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.1 Score=58.40 Aligned_cols=150 Identities=13% Similarity=0.178 Sum_probs=101.8
Q ss_pred CCCCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCcee
Q 001851 14 NCSPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (1004)
Q Consensus 14 ~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll 91 (1004)
..|+.|.|++... .+|+-||..|.||.|.+..+. +...+ .-+-++|+.|+...+...++
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~------------------LL~v~-~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI------------------LLNVL-SAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEecccc------------------HHHHH-HhhccceeEEEEeCCCcEEE
Confidence 3478899998884 688999999999999976431 11111 12457999999998888887
Q ss_pred eee-Cc-eEEEeCCCC---------cccccc-cCCCCcEEEEecCCC--cEEE-EEECCeEEEEEecCCCceeEeeeeec
Q 001851 92 SLS-ES-IAFHRLPNL---------ETIAVL-TKAKGANVYSWDDRR--GFLC-FARQKRVCIFRHDGGRGFVEVKDFGV 156 (1004)
Q Consensus 92 ~l~-d~-v~~~~L~~l---------~~~~~i-~~~kg~~~f~~~~~~--~~l~-V~~kkki~l~~~~~~~~f~~~kEi~l 156 (1004)
+=+ || |.+|.+.++ +|.... ..+..++.+.++.+. .+++ +...+.+.+|.+..| ..+..+.+
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f 216 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITF 216 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEec
Confidence 766 46 999987543 111111 112244455554442 3444 447788999999855 35677889
Q ss_pred CCCceEEEec--CCeEEEEEcCc-eEEEEcCC
Q 001851 157 PDTVKSMSWC--GENICIAIRKG-YMILNATN 185 (1004)
Q Consensus 157 ~d~~~~l~~~--~~~i~v~~~~~-y~lidl~~ 185 (1004)
|-.+.+++.. +..+++|+..+ +.+.++.+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 9999999887 56888998854 66666654
No 54
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.78 E-value=1.6 Score=46.21 Aligned_cols=151 Identities=17% Similarity=0.269 Sum_probs=105.8
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCceeEEEEeccc-C-cee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKPILSMEVLASR-Q-LLL 91 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-k~~I~qI~~l~~~-~-~ll 91 (1004)
..|.|++... .++.-|+-|-+|..|++.+.. .|++.. .+ +.=|+++...|.. + +++
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c---------------k~t~~~----~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC---------------KYTIHE----DSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeecccE---------------EEEEec----CCCcCcEEEEEEcCCCCCcEEE
Confidence 4567776664 478899999999999876532 233321 22 5579999999985 3 333
Q ss_pred eee-Cc-eEEEeCCCCccccc-ccCCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEeeeeecCCCceEEEec
Q 001851 92 SLS-ES-IAFHRLPNLETIAV-LTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC 166 (1004)
Q Consensus 92 ~l~-d~-v~~~~L~~l~~~~~-i~~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~ 166 (1004)
.-+ |+ |++|+|.+++..++ +....-++.++++++ |.+|.. ...++.|+.+..++. ...+.-.+++.+++|.
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~---lysl~a~~~v~sl~fs 242 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKN---LYSLEAFDIVNSLCFS 242 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCce---eEeccCCCeEeeEEec
Confidence 333 34 99999998875544 455667888999887 445554 345677888776543 3334456788999998
Q ss_pred CC--eEEEEEcCceEEEEcCCCCccc
Q 001851 167 GE--NICIAIRKGYMILNATNGALSE 190 (1004)
Q Consensus 167 ~~--~i~v~~~~~y~lidl~~~~~~~ 190 (1004)
.+ .||.|+.....|-|+.++....
T Consensus 243 pnrywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 243 PNRYWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred CCceeEeeccCCceEEEeccchhhhh
Confidence 64 7999999999999999987654
No 55
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.76 E-value=0.024 Score=63.14 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=79.5
Q ss_pred EEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc--
Q 001851 19 IDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-- 96 (1004)
Q Consensus 19 I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~-- 96 (1004)
-.|+...+..|.+|++.|.+-+|+.+..-.+. ..+.++.+.+. ..+|+.|+.-+..++|.+++..
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~------------~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~k 458 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFAST------------NPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKK 458 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccC------------CCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccc
Confidence 34666788999999999999999865432221 11223333444 3489999999999999888762
Q ss_pred --eEEEeCCCCccccc----ccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEec
Q 001851 97 --IAFHRLPNLETIAV----LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHD 143 (1004)
Q Consensus 97 --v~~~~L~~l~~~~~----i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~ 143 (1004)
+.+..+|++..-.+ -...--++|++++++.|.+||| ..+++.||++.
T Consensus 459 nalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 459 NALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 77777776532222 2334467899999999999999 67889999864
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.74 E-value=1.2 Score=46.58 Aligned_cols=239 Identities=13% Similarity=0.182 Sum_probs=142.3
Q ss_pred CcEEEEE--EeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccC-ceeee
Q 001851 17 PKIDAVA--SYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ-LLLSL 93 (1004)
Q Consensus 17 ~~I~ci~--~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~-~ll~l 93 (1004)
.++-+++ ++|..|.=|..++++.+|+++...- ..... ..+ +...|.|+.--|... ++.+-
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--------------~~~~~--~~g-h~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--------------RKELV--YRG-HTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhh--------------hhhhc--ccC-CCcchhhheeCCCCCcceEEe
Confidence 3455444 4578999999999999999886421 01111 111 245799998888774 55555
Q ss_pred eC--ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEEC-CeEEEEEecCCCceeEeeeeecCCCceEEEecC-Ce
Q 001851 94 SE--SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ-KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG-EN 169 (1004)
Q Consensus 94 ~d--~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~k-kki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~-~~ 169 (1004)
+. .+.+|+...-+++..+....+-...++.++.+.+||+.| ..|.++... .++..++..++-.+.-++|.. +.
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r---~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDAR---TYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEec---ccceeehhcccceeeeeeecCCCC
Confidence 54 399999877777777666566566777888778888754 456565544 344444444555556667763 44
Q ss_pred EEEEEcC-c-eEEEEcCCCCcccccCCCCCCCCEEE--EccCCeEE-EE-eCCeEEEEcCCCCccc--CcceeecCCCce
Q 001851 170 ICIAIRK-G-YMILNATNGALSEVFPSGRIGPPLVV--SLLSGELL-LG-KENIGVFVDQNGKLLQ--ADRICWSEAPIA 241 (1004)
Q Consensus 170 i~v~~~~-~-y~lidl~~~~~~~L~~~~~~~~p~i~--~~~~~E~L-l~-~~~~gvfv~~~G~~~~--~~~i~w~~~P~~ 241 (1004)
+++.+.. + ..|+.-.. ..++.........+++ .-++|.++ ++ .|...-.-|.+--.+- -..+.|+..-.+
T Consensus 161 ~Fflt~GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred EEEEecCCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE
Confidence 5554442 3 33333321 1122111111122332 22555543 43 3333333343332221 135678777778
Q ss_pred EEEeCCeEEEEcC-CeeEEEEccCCCceeEEEeeCCcc
Q 001851 242 VIIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVR 278 (1004)
Q Consensus 242 i~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~l~~~~ 278 (1004)
+.+..-||-.-++ ..|.|-.+. ++.-+-.|++.++.
T Consensus 239 FS~dg~~lASaSEDh~IDIA~ve-tGd~~~eI~~~~~t 275 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVE-TGDRVWEIPCEGPT 275 (313)
T ss_pred eccCcceeeccCccceEEeEecc-cCCeEEEeeccCCc
Confidence 8888999988887 478898886 78888888887654
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.74 E-value=3.4 Score=52.72 Aligned_cols=149 Identities=11% Similarity=0.184 Sum_probs=93.3
Q ss_pred CcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEec-ccCceee
Q 001851 17 PKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQLLLS 92 (1004)
Q Consensus 17 ~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~-~~~~ll~ 92 (1004)
..|.+++.. ++.|+.|+.||.|.+|++... .....+. .+..+|..+...| ..++|++
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------------~~~~~~~-~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------------------QLVTEMK-EHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCC------------------eEEEEec-CCCCCEEEEEEcCCCCCEEEE
Confidence 456776653 468999999999999997642 1222222 3467899999987 4466666
Q ss_pred eeC-c-eEEEeCCCCcccccccCCCCcEEEEecCC-CcEEEEE-ECCeEEEEEecCCCceeEeeee-ecCCCceEEEecC
Q 001851 93 LSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDR-RGFLCFA-RQKRVCIFRHDGGRGFVEVKDF-GVPDTVKSMSWCG 167 (1004)
Q Consensus 93 l~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~-~~~l~V~-~kkki~l~~~~~~~~f~~~kEi-~l~d~~~~l~~~~ 167 (1004)
-++ + |.+|++.+...+..+.....+.++.+... ...++++ ..+.|.+|....++. .+..+ .-...+.++.|.+
T Consensus 594 gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 594 GSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRFVD 671 (793)
T ss_pred EcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEEeC
Confidence 664 5 99999876555444433334555655433 3456665 566788887753321 11222 2345678888874
Q ss_pred -CeEEEEEc-CceEEEEcCCC
Q 001851 168 -ENICIAIR-KGYMILNATNG 186 (1004)
Q Consensus 168 -~~i~v~~~-~~y~lidl~~~ 186 (1004)
+.++.|.. +...+.|+.++
T Consensus 672 ~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 672 SSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred CCEEEEEECCCEEEEEeCCCC
Confidence 45555554 56778888754
No 58
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.38 Score=51.34 Aligned_cols=150 Identities=14% Similarity=0.293 Sum_probs=95.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc-Cceeeee--Cc-eEEEe
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR-QLLLSLS--ES-IAFHR 101 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~-~~ll~l~--d~-v~~~~ 101 (1004)
|+-|...+-|+++.+|.-...+... ....|....+ ..-++..|+.|+..|.+ ++.++.+ || +.+|.
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~---------~~~~Wv~~tt-l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEA---------HGRRWVRRTT-LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred cceEEEEecCCceeeeeeccccccc---------ccceeEEEEE-eecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 6778888999999999854322110 1223443322 22347799999999976 4444433 56 89999
Q ss_pred CCCC---c---c---ccccc---CCCCcEEEEe--cCCC---cEEEEEECC------eEEEEEecC-CCceeEeeee-ec
Q 001851 102 LPNL---E---T---IAVLT---KAKGANVYSW--DDRR---GFLCFARQK------RVCIFRHDG-GRGFVEVKDF-GV 156 (1004)
Q Consensus 102 L~~l---~---~---~~~i~---~~kg~~~f~~--~~~~---~~l~V~~kk------ki~l~~~~~-~~~f~~~kEi-~l 156 (1004)
.++- . . +..+. ....-.+||+ ++.+ ..|+|+... ++.||+... +|.+..+.|. ..
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 7652 1 0 11111 1112235555 4332 458998665 899999875 4456666664 46
Q ss_pred CCCceEEEecC------CeEEEEEcCceEEEEcCC
Q 001851 157 PDTVKSMSWCG------ENICIAIRKGYMILNATN 185 (1004)
Q Consensus 157 ~d~~~~l~~~~------~~i~v~~~~~y~lidl~~ 185 (1004)
+|+|+.++|.. ..|.+|++.+..|+++..
T Consensus 223 ~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~ 257 (361)
T KOG2445|consen 223 TDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKV 257 (361)
T ss_pred CCcceeeeeccccCCceeeEEEeecCcEEEEEEee
Confidence 78999999983 368899999999999875
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.68 E-value=0.21 Score=53.10 Aligned_cols=200 Identities=15% Similarity=0.246 Sum_probs=114.7
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
+..++|.-.. |++|.-|+-||.|-+|+...+.-. +.-.|+-.-.+. ....+|..|......+++.+=
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr----------KDLkYQAqd~fM-Mmd~aVlci~FSRDsEMlAsG 281 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR----------KDLKYQAQDNFM-MMDDAVLCISFSRDSEMLASG 281 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhh----------hhhhhhhhccee-ecccceEEEeecccHHHhhcc
Confidence 4578886555 689999999999999986543321 011222111111 135699999999888888865
Q ss_pred e-Cc-eEEEeCCCCccccc--ccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecC-CCceEEEec-
Q 001851 94 S-ES-IAFHRLPNLETIAV--LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVP-DTVKSMSWC- 166 (1004)
Q Consensus 94 ~-d~-v~~~~L~~l~~~~~--i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~-d~~~~l~~~- 166 (1004)
+ || |++|.+.+-.-+.. -..+||+++..++.+...+.-+ -...+.+.-.+.|+ .+||+--. .-+....|.
T Consensus 282 sqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK---~LKEfrGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK---CLKEFRGHSSYVNEATFTD 358 (508)
T ss_pred CcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch---hHHHhcCccccccceEEcC
Confidence 5 46 99999865322221 2457999998887766554443 44455555555443 23343211 122223333
Q ss_pred -CCeEEEEEcC-ceEEEEcCCCCcccccCC-CCC-CCCEEEEccC--CeEEEE-eCCeEEEEcCCCCccc
Q 001851 167 -GENICIAIRK-GYMILNATNGALSEVFPS-GRI-GPPLVVSLLS--GELLLG-KENIGVFVDQNGKLLQ 229 (1004)
Q Consensus 167 -~~~i~v~~~~-~y~lidl~~~~~~~L~~~-~~~-~~p~i~~~~~--~E~Ll~-~~~~gvfv~~~G~~~~ 229 (1004)
|+.|.-++.. ...+-+..+++...-|.+ +.. ....+..++. ..|++| +.|..+++|.+|..++
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence 4566655553 355556666654443332 221 1122334443 467777 4566777788998775
No 60
>PTZ00421 coronin; Provisional
Probab=95.65 E-value=1.1 Score=53.44 Aligned_cols=160 Identities=13% Similarity=0.197 Sum_probs=99.1
Q ss_pred ccCCCCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc-
Q 001851 12 ISNCSPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR- 87 (1004)
Q Consensus 12 ~~~~~~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~- 87 (1004)
+..-...|.+++.. ++.|+.|+.||.|.+|++....... ........+. .+.++|..|..-|..
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----------~~~~~l~~L~-gH~~~V~~l~f~P~~~ 138 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----------NISDPIVHLQ-GHTKKVGIVSFHPSAM 138 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----------ccCcceEEec-CCCCcEEEEEeCcCCC
Confidence 33335679999876 3589999999999999987532110 0001122222 246789999999875
Q ss_pred Cceeeee-Cc-eEEEeCCCCccccccc-CCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCC--ce
Q 001851 88 QLLLSLS-ES-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDT--VK 161 (1004)
Q Consensus 88 ~~ll~l~-d~-v~~~~L~~l~~~~~i~-~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~--~~ 161 (1004)
++|++-+ |+ |.+|++.+-+.+..+. ....+..++++++...++.+ ..++|.+|....+. .+.++..... +.
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---IVSSVEAHASAKSQ 215 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---EEEEEecCCCCcce
Confidence 5666655 45 9999987655444432 23457788888776667666 56788898876443 2334433322 33
Q ss_pred EEEecC--CeEE-EEE----cCceEEEEcCCC
Q 001851 162 SMSWCG--ENIC-IAI----RKGYMILNATNG 186 (1004)
Q Consensus 162 ~l~~~~--~~i~-v~~----~~~y~lidl~~~ 186 (1004)
.+.|.. +.++ +|. .+.+.+.|+.+.
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 456763 3433 343 246788887654
No 61
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=1.3 Score=51.22 Aligned_cols=198 Identities=19% Similarity=0.206 Sum_probs=116.5
Q ss_pred eEEEeCCCCcccccccCCCCcEEEEecCCC--cEEEEEE------CCeEEEEEecCCCcee--EeeeeecCCCceEEEec
Q 001851 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRR--GFLCFAR------QKRVCIFRHDGGRGFV--EVKDFGVPDTVKSMSWC 166 (1004)
Q Consensus 97 v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~--~~l~V~~------kkki~l~~~~~~~~f~--~~kEi~l~d~~~~l~~~ 166 (1004)
+.+|++.+++.+...-...|++.|.+++.. ..+||-+ ...+.||......... ..|.|.-.|. ..|.|.
T Consensus 148 v~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-vqm~WN 226 (566)
T KOG2315|consen 148 VQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADK-VQMKWN 226 (566)
T ss_pred EEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccce-eEEEec
Confidence 999999988766554457889999998764 4677742 2358899886332222 2244544555 357787
Q ss_pred --CC-eEEEEEc---C---ce------EEEEcCCCC-cccccCCCCCCCCEEEEccC-CeEEEEeC---CeEEEEcCCCC
Q 001851 167 --GE-NICIAIR---K---GY------MILNATNGA-LSEVFPSGRIGPPLVVSLLS-GELLLGKE---NIGVFVDQNGK 226 (1004)
Q Consensus 167 --~~-~i~v~~~---~---~y------~lidl~~~~-~~~L~~~~~~~~p~i~~~~~-~E~Ll~~~---~~gvfv~~~G~ 226 (1004)
|. .||+++. + .| +++++++.. ..+|.-.| .--.++|.++ .||.+|++ ...-|+|..|+
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G--PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG--PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC--CceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 44 4566543 1 23 566666222 22332222 1223667655 49999876 44667788887
Q ss_pred cccCcceeecCCCceEEEeCC---eEEE--Ec--CCeeEEEEccCCCceeEEEeeCCccccc--cCCCeEEEEeCC----
Q 001851 227 LLQADRICWSEAPIAVIIQKP---YAIA--LL--PRRVEVRSLRVPYALIQTIVLQNVRHLI--PSSNAVVVALEN---- 293 (1004)
Q Consensus 227 ~~~~~~i~w~~~P~~i~~~~P---Yll~--~~--~~~ieV~~l~~~~~lvQti~l~~~~~l~--~~~~~v~vas~~---- 293 (1004)
++ ..+...|..-++..| ||+. |. ++.|||.++.+ ..++-++...+....- +++.-|+.||..
T Consensus 305 ~v----~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 305 PV----FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLR 379 (566)
T ss_pred Ee----EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCceEEEEcCCCcEEEEEeccccEE
Confidence 64 356666666666555 2322 22 37899999975 6666666655544322 233344445432
Q ss_pred -----eEEEecccC
Q 001851 294 -----SIFGLFPVP 302 (1004)
Q Consensus 294 -----~i~~l~~~~ 302 (1004)
.||...-..
T Consensus 380 vdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 380 VDNGIKIWHYTGSL 393 (566)
T ss_pred ecCCeEEEEecCce
Confidence 477766544
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.33 E-value=5.7 Score=50.73 Aligned_cols=231 Identities=12% Similarity=0.073 Sum_probs=125.4
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc-Cceee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR-QLLLS 92 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~-~~ll~ 92 (1004)
...|+|++.. |+.|+.|+.||.|.+|+........ ....+. .... ....+|..+...+.. ..+++
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~---------~~~~~~-~~~~--~~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG---------RDIHYP-VVEL--ASRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc---------cccccc-eEEe--cccCceeeEEeccCCCCEEEE
Confidence 4467877765 4689999999999999875321100 000011 1111 124577777776643 44544
Q ss_pred ee-Cc-eEEEeCCCCcccccc-cCCCCcEEEEecCCC-cEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEec-
Q 001851 93 LS-ES-IAFHRLPNLETIAVL-TKAKGANVYSWDDRR-GFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC- 166 (1004)
Q Consensus 93 l~-d~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~-~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~- 166 (1004)
.+ |+ |.+|++.+-+.+..+ .....+..+++++.. ..++.+ ..+.|.+|....+. .+..+.....+.++.|.
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SIGTIKTKANICCVQFPS 627 (793)
T ss_pred EeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EEEEEecCCCeEEEEEeC
Confidence 44 45 999998765444333 233557778887543 455555 46788899876443 22334445677888884
Q ss_pred --CCeEEEEEcC-ceEEEEcCCCCc-c-cccCCCCCCCCEEEEccCCeEEE-E-eCCeEEEEcCCCC--cccCcc-eeec
Q 001851 167 --GENICIAIRK-GYMILNATNGAL-S-EVFPSGRIGPPLVVSLLSGELLL-G-KENIGVFVDQNGK--LLQADR-ICWS 236 (1004)
Q Consensus 167 --~~~i~v~~~~-~y~lidl~~~~~-~-~L~~~~~~~~p~i~~~~~~E~Ll-~-~~~~gvfv~~~G~--~~~~~~-i~w~ 236 (1004)
|..+++|... ...++|+.++.. . .+.... .....+.+ .++..++ + .|+..-+.|..-. .....+ -.+.
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~-~~V~~v~f-~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS-KTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceEecCCC-CCEEEEEE-eCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 4678888764 567789877642 1 221111 11112333 3445554 3 4555555554210 000011 1232
Q ss_pred CC---CceEEE--eCCeEEEEcC-CeeEEEEcc
Q 001851 237 EA---PIAVII--QKPYAIALLP-RRVEVRSLR 263 (1004)
Q Consensus 237 ~~---P~~i~~--~~PYll~~~~-~~ieV~~l~ 263 (1004)
+. +..+.+ ..+||++.+. +.+-|++..
T Consensus 706 gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 706 GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 21 123333 3568877765 678888764
No 63
>PTZ00421 coronin; Provisional
Probab=95.16 E-value=3.6 Score=49.01 Aligned_cols=156 Identities=12% Similarity=0.117 Sum_probs=90.2
Q ss_pred CCcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 16 SPKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 16 ~~~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
...|.|++.+. +.|+.|+.||.|.+|++.... ....+. .+..+|..|...+..+++++
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~------------------~~~~l~-~h~~~V~sla~spdG~lLat 185 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK------------------AVEVIK-CHSDQITSLEWNLDGSLLCT 185 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe------------------EEEEEc-CCCCceEEEEEECCCCEEEE
Confidence 45788888873 478899999999999987432 112222 23568999999998888877
Q ss_pred eeC-c-eEEEeCCCCcccccccCCCCc--EEEEecCCCcEEE-EEE----CCeEEEEEecCCCceeEeeeeecCCCceEE
Q 001851 93 LSE-S-IAFHRLPNLETIAVLTKAKGA--NVYSWDDRRGFLC-FAR----QKRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (1004)
Q Consensus 93 l~d-~-v~~~~L~~l~~~~~i~~~kg~--~~f~~~~~~~~l~-V~~----kkki~l~~~~~~~~f~~~kEi~l~d~~~~l 163 (1004)
.+. + |.+|++.+.+.+..+....+. ....+..+.+.++ ++. .+.|.+|............++.....+...
T Consensus 186 gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~ 265 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIP 265 (493)
T ss_pred ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEE
Confidence 764 5 999998765544433222221 2233334434443 332 367888876532111111111111122222
Q ss_pred Eec--CCeEEEEEc--CceEEEEcCCCCccc
Q 001851 164 SWC--GENICIAIR--KGYMILNATNGALSE 190 (1004)
Q Consensus 164 ~~~--~~~i~v~~~--~~y~lidl~~~~~~~ 190 (1004)
.|. ++.+++|.+ ....++|+.++....
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 333 456777653 457788888775433
No 64
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.01 E-value=0.57 Score=52.65 Aligned_cols=166 Identities=11% Similarity=0.112 Sum_probs=107.1
Q ss_pred cEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc--Cceeee
Q 001851 18 KIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR--QLLLSL 93 (1004)
Q Consensus 18 ~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~--~~ll~l 93 (1004)
.|+|+-..+ ..++-|.+||.+++|.+..--+.. ........+.+. -+.-+|+.+.+-... ..+++.
T Consensus 125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~---------~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD---------NDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc---------cCCCccceeeec-cCcceeEEEEecCCCccceEEEe
Confidence 689988886 489999999999999976533211 111122222222 246799999988763 566777
Q ss_pred eC-c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEE---EecC-CCc-------ee--Eeeeee-c
Q 001851 94 SE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIF---RHDG-GRG-------FV--EVKDFG-V 156 (1004)
Q Consensus 94 ~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~---~~~~-~~~-------f~--~~kEi~-l 156 (1004)
+. . +++|+|.....+.++......+++++|+...++.|| ..++|.+. .+.+ .+. +. .++-+. -
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 64 4 999999877766677677778899999988888888 45666543 3431 000 10 011111 1
Q ss_pred CC--CceEEEec--CCeEEEEEc-CceEEEEcCCCCcccccC
Q 001851 157 PD--TVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFP 193 (1004)
Q Consensus 157 ~d--~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~ 193 (1004)
.+ .|++++.. |..+.-|.. ..|++-|+.+.+...-+.
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 23 67777665 667777766 568888998877654433
No 65
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.94 E-value=0.66 Score=52.43 Aligned_cols=150 Identities=12% Similarity=0.197 Sum_probs=97.3
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
..+|+|++-.. .+|.-|...|.|.+..+.-... .. .+..-+...|.-+..-+....+|+.
T Consensus 121 ~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~------------tt------~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 121 QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK------------TT------TFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred cceeEEEEecCCcceeEEeccCCcEEEEecccCcc------------cc------ceecCCCCeEEEeecccccceeeEe
Confidence 46899997653 5889999999998887653321 11 1122234566677777776666655
Q ss_pred -eC-c-eEEEeCCCCccccccc--CCCCcEEEEecCCCcEE--EEEECCeEEEEEecCCCceeEeeeeecCCCceEEEec
Q 001851 94 -SE-S-IAFHRLPNLETIAVLT--KAKGANVYSWDDRRGFL--CFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC 166 (1004)
Q Consensus 94 -~d-~-v~~~~L~~l~~~~~i~--~~kg~~~f~~~~~~~~l--~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~ 166 (1004)
+| | |++|+.....++.... ....|.-+|+.+....| -|+..|||.+|..... ...+-+....+-.+++|.
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~---~s~~~l~y~~Plstvaf~ 259 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ---ASTDRLTYSHPLSTVAFS 259 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc---cccceeeecCCcceeeec
Confidence 56 6 9999987766554321 12344445666655444 4568899999987621 233445666777888886
Q ss_pred --CCeEEEEEcC-ceEEEEcCCC
Q 001851 167 --GENICIAIRK-GYMILNATNG 186 (1004)
Q Consensus 167 --~~~i~v~~~~-~y~lidl~~~ 186 (1004)
|..+|.|+.+ +.+-||+...
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred CCceEEEeecCCceEEEEecccC
Confidence 5689999875 4677888753
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.94 E-value=0.92 Score=51.00 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=105.3
Q ss_pred CcEEEEEEeCC--EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYGL--KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~~--~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..|+|+-.|.. -|+++.-||.+.+|.+++..+. .+.+ ..+.+.||....+.|...-.++.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~----------------~lqS-~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP----------------KLQS-IHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh----------------hhee-eeeccCccceeeecCCCceEEEec
Confidence 57999999974 6899999999999999985432 1111 235578999999999876455555
Q ss_pred C-c--eEEEeCCC-----CcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEe
Q 001851 95 E-S--IAFHRLPN-----LETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSW 165 (1004)
Q Consensus 95 d-~--v~~~~L~~-----l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~ 165 (1004)
. . +..|+|.+ +++...++ .|++..|.+..+...|+++ ..+-|.|.....+ ++ +-.+.+++.+..++|
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-el--i~s~KieG~v~~~~f 352 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-EL--ITSFKIEGVVSDFTF 352 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccCceEEeehhhhh-hh--hheeeeccEEeeEEE
Confidence 5 2 88888854 23333333 5678889998877777765 5566777765522 22 233556888999999
Q ss_pred cCC--eEEEE-EcCceEEEEcCCCCccccc
Q 001851 166 CGE--NICIA-IRKGYMILNATNGALSEVF 192 (1004)
Q Consensus 166 ~~~--~i~v~-~~~~y~lidl~~~~~~~L~ 192 (1004)
..+ .|++. ...+.++.|+.+.....-+
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 843 33333 2468899999887554444
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.84 E-value=0.32 Score=55.13 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=89.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--ceEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--SIAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--~v~~~~L~ 103 (1004)
++.+..|+.||.|-+|+..... ..+...++.- ......|+.|......+.|+..+. .+.+|+|.
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~~-------------v~p~~~vk~A-H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSRT-------------VRPVMKVKDA-HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred cchhhhcccCCceeeeecCCcc-------------cccceEeeec-cCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 3678999999999999864322 1122333321 122458999999999999999985 49999998
Q ss_pred CCcc-cc---cccCCCCcEEEEecCCCcEEEEEE-------CCeEEEEEecCCCceeEeeeeecCC-CceEEEecC--Ce
Q 001851 104 NLET-IA---VLTKAKGANVYSWDDRRGFLCFAR-------QKRVCIFRHDGGRGFVEVKDFGVPD-TVKSMSWCG--EN 169 (1004)
Q Consensus 104 ~l~~-~~---~i~~~kg~~~f~~~~~~~~l~V~~-------kkki~l~~~~~~~~f~~~kEi~l~d-~~~~l~~~~--~~ 169 (1004)
.++. +. .++.....+-.|++++...|+-+. ..+|.+|.-. .|..+.+|.+++ .+.-+.|.. |.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~---t~d~v~ki~i~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM---TLDTVYKIDISTASVVRCLWHPKLNQ 471 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc---ceeeEEEecCCCceEEEEeecchhhh
Confidence 7742 21 233333334445555533333331 1235555433 577777777775 355678985 78
Q ss_pred EEEEEcCc--eEEEEcC
Q 001851 170 ICIAIRKG--YMILNAT 184 (1004)
Q Consensus 170 i~v~~~~~--y~lidl~ 184 (1004)
|++|+..+ ++++|-+
T Consensus 472 i~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 472 IFAGSGDGTAHVYYDPN 488 (641)
T ss_pred eeeecCCCceEEEECcc
Confidence 99998753 6666654
No 68
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.82 E-value=6 Score=44.90 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=133.3
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..|+|++.. |+.|..|..+|.+.+|+..+.-. .+ -+.+|.||..|+--...+.++.-+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~-------------------~t-l~~HkgPI~slKWnk~G~yilS~~ 295 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI-------------------ST-LGQHKGPIFSLKWNKKGTYILSGG 295 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhh-------------------hh-hhccCCceEEEEEcCCCCEEEecc
Confidence 589999988 68999999999999999776421 11 235789999999988888887654
Q ss_pred -Cc-eEEEeCCCCcccccccCCCCc-EEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeee-ecCCCceEEEecCC-e
Q 001851 95 -ES-IAFHRLPNLETIAVLTKAKGA-NVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDF-GVPDTVKSMSWCGE-N 169 (1004)
Q Consensus 95 -d~-v~~~~L~~l~~~~~i~~~kg~-~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi-~l~d~~~~l~~~~~-~ 169 (1004)
|+ ..+|+-.+-+.....+..-.. .-+-+-.+..+.+-.++..|.+|+++.++. ++.+ --..++..|.|... .
T Consensus 296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P---~~t~~GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRP---VKTFIGHHGEVNALKWNPTGS 372 (524)
T ss_pred CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCc---ceeeecccCceEEEEECCCCc
Confidence 55 777775332211111110000 001110111233334778899999985542 2222 23456778999842 3
Q ss_pred EEEEEc-C-ceEEEEcCCCC-cccccCCCC-------CC-CCEEEEccCCeEEE--EeCCeEEEEcC-CCCcccCcceee
Q 001851 170 ICIAIR-K-GYMILNATNGA-LSEVFPSGR-------IG-PPLVVSLLSGELLL--GKENIGVFVDQ-NGKLLQADRICW 235 (1004)
Q Consensus 170 i~v~~~-~-~y~lidl~~~~-~~~L~~~~~-------~~-~p~i~~~~~~E~Ll--~~~~~gvfv~~-~G~~~~~~~i~w 235 (1004)
+...+. . ---|-++..+. ...+...++ ++ -|..-....+-.++ ++|++.-..|. .|.++ .++.=
T Consensus 373 LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i--~~f~k 450 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI--HTLMK 450 (524)
T ss_pred eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee--Eeecc
Confidence 333332 2 23344444332 112211110 00 11111112233333 24444434442 44433 23322
Q ss_pred cCCCc-eEEEe--CCeEEEEcC-CeeEEEEccCCCceeEEEeeCCc-cccc-cC-CCeEE-EEeCCeEEEec
Q 001851 236 SEAPI-AVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVLQNV-RHLI-PS-SNAVV-VALENSIFGLF 299 (1004)
Q Consensus 236 ~~~P~-~i~~~--~PYll~~~~-~~ieV~~l~~~~~lvQti~l~~~-~~l~-~~-~~~v~-vas~~~i~~l~ 299 (1004)
...|. +++|. .-|+..-.- +++.|.+.. ++.++|+..=.++ ..++ .. ++.+- .+++..+.++.
T Consensus 451 H~~pVysvafS~~g~ylAsGs~dg~V~iws~~-~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK-TGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCCceEEEEecCCCcEEEecCCCCeeEecccc-chheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 33443 45555 456665543 678899887 6888888765554 2222 12 22222 24566665543
No 69
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.82 E-value=4.5 Score=45.72 Aligned_cols=160 Identities=7% Similarity=0.002 Sum_probs=98.6
Q ss_pred eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEEC-----------CeEEEEEecCCCceeEeeeeecCCCce----
Q 001851 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ-----------KRVCIFRHDGGRGFVEVKDFGVPDTVK---- 161 (1004)
Q Consensus 97 v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~k-----------kki~l~~~~~~~~f~~~kEi~l~d~~~---- 161 (1004)
|++++..+.+.+..++..+..+.. ++++...+.|+.. ..|.+|... ....++|+.+|+.|.
T Consensus 29 v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~---t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 29 VYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ---THLPIADIELPEGPRFLVG 104 (352)
T ss_pred EEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc---cCcEEeEEccCCCchhhcc
Confidence 778887777766666555555553 7777777777644 567777766 345678898888777
Q ss_pred ----EEEec--CCeEEEEE---cCceEEEEcCCCCcccccCCCCCCCCEEEEccCCeE-EEEeCCeEEE--EcCCCCccc
Q 001851 162 ----SMSWC--GENICIAI---RKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGEL-LLGKENIGVF--VDQNGKLLQ 229 (1004)
Q Consensus 162 ----~l~~~--~~~i~v~~---~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~-Ll~~~~~gvf--v~~~G~~~~ 229 (1004)
.+++. |..++|++ .....++|+.++....-.+.+. -+.+...+++.| ++|.|..... .+.+|+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~- 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK- 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEecCCccEEEeecCceEEEEecCCCceE-
Confidence 66665 56888887 4678999999997655444332 234444444444 5677765554 35566633
Q ss_pred Ccceee--c------CCCceEEEeCCeEEEEcCCeeEEEEcc
Q 001851 230 ADRICW--S------EAPIAVIIQKPYAIALLPRRVEVRSLR 263 (1004)
Q Consensus 230 ~~~i~w--~------~~P~~i~~~~PYll~~~~~~ieV~~l~ 263 (1004)
..+... . ..|.......-++++-+++.+.+.++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~ 223 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLS 223 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecC
Confidence 222222 2 334222223456666666788888753
No 70
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.80 E-value=2.7 Score=43.90 Aligned_cols=153 Identities=18% Similarity=0.250 Sum_probs=91.2
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASYGL--KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~~~--~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
+..|+|+..+.+ .|++|+++|.|.+|++..+.-.. +++ . -..-+|+.+.+.+...++...
T Consensus 124 ~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--------------~li---P-e~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--------------ELI---P-EDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred CCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--------------ccC---C-CCCcceeeEEEcCCCcEEEEe
Confidence 578999998875 79999999999999998764211 111 0 124689999999999999999
Q ss_pred eC-c-eEEEeCCC------CcccccccCCCC-cEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCC---c
Q 001851 94 SE-S-IAFHRLPN------LETIAVLTKAKG-ANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDT---V 160 (1004)
Q Consensus 94 ~d-~-v~~~~L~~------l~~~~~i~~~kg-~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~---~ 160 (1004)
.+ | ..+|+|.. |+|+.++.--.+ +...-++++...|+-+ ..+.+.||..++ .|+. |..+... +
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~--~~kl--e~~l~gh~rWv 261 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD--FFKL--ELVLTGHQRWV 261 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC--ceee--EEEeecCCceE
Confidence 88 5 89999854 344433211111 1222335555555554 678888888662 2333 3333222 1
Q ss_pred eEEEec--CCeEEEEEcCc-eEEEEcCCCCccc
Q 001851 161 KSMSWC--GENICIAIRKG-YMILNATNGALSE 190 (1004)
Q Consensus 161 ~~l~~~--~~~i~v~~~~~-y~lidl~~~~~~~ 190 (1004)
=..+|. |.+|+-|.... -.+-|+.+|....
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceee
Confidence 112222 34566555433 3444666555433
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.79 E-value=0.071 Score=62.79 Aligned_cols=148 Identities=12% Similarity=0.180 Sum_probs=86.2
Q ss_pred ccCCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCC-ceeEeeeeecCCCceEEEecCCeEEEEEcCceEEEEcCCC-
Q 001851 111 LTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGR-GFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNG- 186 (1004)
Q Consensus 111 i~~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~-~f~~~kEi~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~- 186 (1004)
+...+||..|....-..-||++ +.-++.+.+...+- .....+++...++...|.+. +.+|+.+ |.++|+.--
T Consensus 941 l~apnnlkiFkA~tIEdwilfatqtglfftsisqprNpsriagp~svtslE~mseI~cv---amI~ns~-~qla~iplds 1016 (1265)
T KOG0976|consen 941 LEAPNNLKIFKAGTIEDWILFATQTGLFFTSISQPRNPSRIAGPKSVTSLEPMSEIHCV---AMIGNSK-FQLADIPLDS 1016 (1265)
T ss_pred HhccccceeecccccccceeEeecCCceEEEeecCCCchhhcCccccccccccceeeEE---EEEecCc-ceeecCchhH
Confidence 4556788888654322224443 34444444433210 11122344434444444322 4445544 556665421
Q ss_pred ----------Cc-ccccCCCCCCCCE-EEEccCCeEEEEe----CCeEEEEcCCCCcccCcceeecCCCceEEEeCCeEE
Q 001851 187 ----------AL-SEVFPSGRIGPPL-VVSLLSGELLLGK----ENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAI 250 (1004)
Q Consensus 187 ----------~~-~~L~~~~~~~~p~-i~~~~~~E~Ll~~----~~~gvfv~~~G~~~~~~~i~w~~~P~~i~~~~PYll 250 (1004)
.+ ..+||......|+ +...++..|++-+ -.++.|++..|+.++-..+.|+ .|.++++..||.|
T Consensus 1017 L~lamqst~pSirpeVlpef~hvh~i~yhQqngqrfll~sddt~lh~rkyn~trd~fs~~akl~vp-ePlsFies~P~gf 1095 (1265)
T KOG0976|consen 1017 LELAMQSTDPSIRPEVLPEFSHVHPISYHQQNGQRFLLESDDTFLHFRKYNDTRDRFSRTAKLKVP-EPLSFIESEPYGF 1095 (1265)
T ss_pred HHHHHhcCCCccchhhhhhhcCcceeEEEEecccchhhhhhhhHHHHhhhcccchhhhhcccccCC-CchhhhhcCcceE
Confidence 11 2344433333444 2334455666544 4679999999998888899999 9999999999999
Q ss_pred EEcCCeeEEEEcc
Q 001851 251 ALLPRRVEVRSLR 263 (1004)
Q Consensus 251 ~~~~~~ieV~~l~ 263 (1004)
++..+.+++.-+.
T Consensus 1096 ifa~dtfyyv~ld 1108 (1265)
T KOG0976|consen 1096 IFAFDTFYYVELD 1108 (1265)
T ss_pred EEecceEEEEeec
Confidence 9999988888774
No 72
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.74 E-value=4.3 Score=43.76 Aligned_cols=104 Identities=12% Similarity=0.210 Sum_probs=69.6
Q ss_pred eEEEEecccCceee-eeCc-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeee
Q 001851 79 LSMEVLASRQLLLS-LSES-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF 154 (1004)
Q Consensus 79 ~qI~~l~~~~~ll~-l~d~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi 154 (1004)
..++.-+.+.+|.+ |+|| |.+|++.++..-..+ ...+.++++|++.+...|.-+ ..-+|.+|.+..|. .+++|
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs---~l~ri 103 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS---PLKRI 103 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC---ceeEE
Confidence 44555555555544 4566 999999988633222 446788899998775555554 45678888877554 45778
Q ss_pred ecCCCceEEEec--CCeEEEEEc--CceEEEEcCC
Q 001851 155 GVPDTVKSMSWC--GENICIAIR--KGYMILNATN 185 (1004)
Q Consensus 155 ~l~d~~~~l~~~--~~~i~v~~~--~~y~lidl~~ 185 (1004)
.++.++....|. +...||++. ..=++++...
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 899999999998 456777765 3345555544
No 73
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.62 E-value=6.6 Score=43.10 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=113.5
Q ss_pred CCcccccccccCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeE
Q 001851 3 HNAFDSLELISNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILS 80 (1004)
Q Consensus 3 ~~~f~~~~l~~~~~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~q 80 (1004)
|-||.+.-+++.-.+-|.|+++- +..+.-|..|+++-+|++.... +.-+..+ +...|.-
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~------------------LkltltG-hi~~vr~ 198 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ------------------LKLTLTG-HIETVRG 198 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe------------------EEEeecc-hhheeee
Confidence 67888988898888999998776 4678899999999999986421 1112222 3567888
Q ss_pred EEEecccCceeeeeC-c-eEEEeCCCCccccc-ccCCCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeec
Q 001851 81 MEVLASRQLLLSLSE-S-IAFHRLPNLETIAV-LTKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGV 156 (1004)
Q Consensus 81 I~~l~~~~~ll~l~d-~-v~~~~L~~l~~~~~-i~~~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l 156 (1004)
+.+.+.+..+++..+ + |+.|+|..-+.+.. -...-|+.+..+.+.-..|+-+. ...+.++... .+. .+.-+.-
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~--~V~~l~G 275 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRA--SVHVLSG 275 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec-ccc--eEEEecC
Confidence 999999999999987 4 99999866554421 12234555555555444454443 3345565544 111 1111111
Q ss_pred C-CCceEEEec--CCeEEEEEc-CceEEEEcCCCCc-ccccCCCCCCCCEEEEccCCeEEE
Q 001851 157 P-DTVKSMSWC--GENICIAIR-KGYMILNATNGAL-SEVFPSGRIGPPLVVSLLSGELLL 212 (1004)
Q Consensus 157 ~-d~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~-~~L~~~~~~~~p~i~~~~~~E~Ll 212 (1004)
. .++.++.+. +..|+-|+- ....+-|+..|.. ..++...++- ..+.+...|++.
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv--ral~lhP~e~~f 334 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV--RALCLHPKENLF 334 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee--eEEecCCchhhh
Confidence 1 244555554 556666654 5678889988864 4454443321 222344455554
No 74
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=0.94 Score=48.51 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=97.5
Q ss_pred cEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC
Q 001851 18 KIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (1004)
Q Consensus 18 ~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d 95 (1004)
.|+++-.. .+.|+|++=||.|.+|++..+.- ...+ -++.||......++...+.--.|
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l------------------~~~~--~~~~plL~c~F~d~~~~~~G~~d 74 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL------------------KLKF--KHGAPLLDCAFADESTIVTGGLD 74 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhh------------------hhhe--ecCCceeeeeccCCceEEEeccC
Confidence 46665444 47999999999999999876421 0011 13679999988886666665567
Q ss_pred c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecCCeEEEE
Q 001851 96 S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIA 173 (1004)
Q Consensus 96 ~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~~i~v~ 173 (1004)
+ |..|++.+-....--...+++.+++.....+.++-+ =.++|-++.-.. . ...-.+.-+..+-+|...|+.|+||
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~--~~~~~~d~~kkVy~~~v~g~~LvVg 151 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-K--VVVGTFDQGKKVYCMDVSGNRLVVG 151 (323)
T ss_pred ceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-c--ccccccccCceEEEEeccCCEEEEe
Confidence 6 999998764332223455677888777666665555 466776665431 0 0111133455778888889999998
Q ss_pred Ec-CceEEEEcCCC
Q 001851 174 IR-KGYMILNATNG 186 (1004)
Q Consensus 174 ~~-~~y~lidl~~~ 186 (1004)
+. +...++|+.+-
T Consensus 152 ~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNL 165 (323)
T ss_pred ecCceEEEEEcccc
Confidence 76 67888999864
No 75
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.61 E-value=8.3 Score=45.65 Aligned_cols=235 Identities=15% Similarity=0.172 Sum_probs=142.6
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
...|+|+..+ |+.+.-++.+|.+.++....... .+.+.. .-+...|..+...|....++..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~----------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS----------------NLLREL-SGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc----------------hhhccc-cccccceeeeEECCCCcEEEEe
Confidence 4577886666 46888888999999998743220 111111 1246689999999999888888
Q ss_pred eC-c-eEEEeCCCC-cccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeee-cCCCceEEEec-
Q 001851 94 SE-S-IAFHRLPNL-ETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC- 166 (1004)
Q Consensus 94 ~d-~-v~~~~L~~l-~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l~~~- 166 (1004)
++ . +.+|++..- ..+.++ .....++++++++....++-+ ..+.|.++....+. ..+-+. -.+.+.++++.
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---CVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe---EEEeeeccCCceEEEEECC
Confidence 86 4 999998332 222222 334567788888776455555 66788888877432 223233 34577788887
Q ss_pred -CCeEEEEEc-CceEEEEcCCCCcc--cccCCCCCCCCE--EEEccCCeEEE-Ee-CCeEEEEcCC-CCcccCcceeecC
Q 001851 167 -GENICIAIR-KGYMILNATNGALS--EVFPSGRIGPPL--VVSLLSGELLL-GK-ENIGVFVDQN-GKLLQADRICWSE 237 (1004)
Q Consensus 167 -~~~i~v~~~-~~y~lidl~~~~~~--~L~~~~~~~~p~--i~~~~~~E~Ll-~~-~~~gvfv~~~-G~~~~~~~i~w~~ 237 (1004)
|+.|+.|.. ....+.|+.++... ..+.......|+ +..-+++.+++ +. |+..-+.+.. |.. ...|..
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~----~~~~~~ 374 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS----VGTYTG 374 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc----eeeecc
Confidence 356666654 45778899999843 333322211132 34447777766 44 4466666654 322 223333
Q ss_pred CCce------E--EEeCCeEEEEcC-CeeEEEEccCCCceeEEEeeC
Q 001851 238 APIA------V--IIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQ 275 (1004)
Q Consensus 238 ~P~~------i--~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~l~ 275 (1004)
.+.. . .-...|++.... ..|.++++. +...+|.+...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~-s~~~~~~l~~h 420 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS-SGGILQRLEGH 420 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeCCceEEEEeCC-ccchhhhhcCC
Confidence 2221 1 123456666665 679999986 57777777654
No 76
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.48 E-value=3.1 Score=50.28 Aligned_cols=191 Identities=15% Similarity=0.182 Sum_probs=109.9
Q ss_pred cCCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 13 SNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 13 ~~~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
...|.+|+|++++.+++|++..+- |+.|.-.. .. +.+...+...|..+.++-+.-+.+.
T Consensus 73 ~~lp~~I~alas~~~~vy~A~g~~-i~~~~rgk-------------------~i-~~~~~~~~a~v~~l~~fGe~lia~d 131 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYVYVASGNK-IYAYARGK-------------------HI-RHTTLLHGAKVHLLLPFGEHLIAVD 131 (910)
T ss_pred CCCCCceEEEEecCceEEEecCcE-EEEEEccc-------------------eE-EEEeccccceEEEEeeecceEEEEE
Confidence 366899999999999999999887 77776331 11 1112223467888887765433343
Q ss_pred eeCceEEEeCCCC-cccc-cccCC----CCcEEEEecCCC--cEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEE
Q 001851 93 LSESIAFHRLPNL-ETIA-VLTKA----KGANVYSWDDRR--GFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (1004)
Q Consensus 93 l~d~v~~~~L~~l-~~~~-~i~~~----kg~~~f~~~~~~--~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l 163 (1004)
....+.+|...+- ++.+ .++.. ++++.++ .+.. ..|+|+ .++++.||-+..++.....+++ ++.|+++
T Consensus 132 ~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~--~s~IT~i 208 (910)
T KOG1539|consen 132 ISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF--FSRITAI 208 (910)
T ss_pred ccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEeccc--ccceeEe
Confidence 3445888886541 1111 01111 1233332 3443 457776 7788999988755432233332 3666666
Q ss_pred EecC--CeEEEEEcC-ceEEEEcCCCCcccccCCCCCCCCEEEEc-cCCeEEEEeC---CeEEEEcCCCCcc
Q 001851 164 SWCG--ENICIAIRK-GYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLGKE---NIGVFVDQNGKLL 228 (1004)
Q Consensus 164 ~~~~--~~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~E~Ll~~~---~~gvfv~~~G~~~ 228 (1004)
.-.- |.+.+|+.+ ...+.|+..+.+..-|.... ++-.-+.. .+|+-+++.. +.-.|.|.++++.
T Consensus 209 eqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~-g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl 279 (910)
T KOG1539|consen 209 EQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW-GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL 279 (910)
T ss_pred ccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc-cceeEEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence 5443 678899875 57778999887665554321 11111222 4556655432 3345678887654
No 77
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.47 E-value=8.1 Score=42.62 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=121.0
Q ss_pred ceEEEeCC----CCcccccccCCCCcEEEEecCCCcEEEEEE----CCeEEEEEecCC-CceeEeeeeecCCCc-eEEEe
Q 001851 96 SIAFHRLP----NLETIAVLTKAKGANVYSWDDRRGFLCFAR----QKRVCIFRHDGG-RGFVEVKDFGVPDTV-KSMSW 165 (1004)
Q Consensus 96 ~v~~~~L~----~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~----kkki~l~~~~~~-~~f~~~kEi~l~d~~-~~l~~ 165 (1004)
+|.+|.|. ++..+..+...-+.+..+++++...|.++. ..++.-|+|+.. ..+..+-+..+++.+ +.++.
T Consensus 17 gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv 96 (346)
T COG2706 17 GIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV 96 (346)
T ss_pred ceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE
Confidence 46777765 333334455566778899988876666653 568999999853 245555666677655 77777
Q ss_pred c--CCeEEEEEc--CceEEEEcCC-CCccccc----CCCC-----CCCC---EEEEccCCeEEEEe----CCeEEEEcCC
Q 001851 166 C--GENICIAIR--KGYMILNATN-GALSEVF----PSGR-----IGPP---LVVSLLSGELLLGK----ENIGVFVDQN 224 (1004)
Q Consensus 166 ~--~~~i~v~~~--~~y~lidl~~-~~~~~L~----~~~~-----~~~p---~i~~~~~~E~Ll~~----~~~gvfv~~~ 224 (1004)
. |..+++|+= ..+.++-+++ |...... ..+. ...| .+..-+++.+|++. |.+.+|-=.+
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 6 457777753 4577777754 6543332 1221 1112 23334777787643 4566665448
Q ss_pred CCcccCc--ceeecCCCceEEEeC--CeEEEEc--CCeeEEEEccCC-C--ceeEEEee-CCc-------c-ccccCCCe
Q 001851 225 GKLLQAD--RICWSEAPIAVIIQK--PYAIALL--PRRVEVRSLRVP-Y--ALIQTIVL-QNV-------R-HLIPSSNA 286 (1004)
Q Consensus 225 G~~~~~~--~i~w~~~P~~i~~~~--PYll~~~--~~~ieV~~l~~~-~--~lvQti~l-~~~-------~-~l~~~~~~ 286 (1004)
|...+.. .+.=..-|+.|+|.. +|...++ ++.|.|+...+. + ..+|++.. |.. . +-...++.
T Consensus 177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 8655332 334456889999963 4444444 589999988431 2 56788764 321 1 11234566
Q ss_pred EEEEeCC---eEEEecc
Q 001851 287 VVVALEN---SIFGLFP 300 (1004)
Q Consensus 287 v~vas~~---~i~~l~~ 300 (1004)
++.+|++ +|+...-
T Consensus 257 FLYasNRg~dsI~~f~V 273 (346)
T COG2706 257 FLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEEEecCCCCeEEEEEE
Confidence 7777753 4554443
No 78
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.43 E-value=3.4 Score=48.82 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=112.5
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-
Q 001851 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS- 94 (1004)
Q Consensus 16 ~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~- 94 (1004)
+..+.|++++++.|+-|..|+.|++-...+.+.. ... +...+.+++ +......+.|+++-
T Consensus 291 ~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~-------------~h~---~~~~~p~~~---~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 291 AHDVRSMAVIENALISGGRDFTLAICSSREFKNM-------------DHR---QKNLFPASD---RVSVAPENRLLVLWK 351 (691)
T ss_pred cccceeeeeecceEEecceeeEEEEccccccCch-------------hhh---ccccccccc---eeecCccceEEEEec
Confidence 4679999999999999999999988766553221 111 111122222 22233335555553
Q ss_pred C-ceEEEeCCCC------ccc----ccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCC----
Q 001851 95 E-SIAFHRLPNL------ETI----AVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDT---- 159 (1004)
Q Consensus 95 d-~v~~~~L~~l------~~~----~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~---- 159 (1004)
+ ++..|.+.+- ... -.+.+..++++-|++++...||+++=.++.||++.... .+|+..+.+.
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~---~vk~~~v~~~~~~~ 428 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP---NVKVINVDDVPLAL 428 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc---ceeEEEeccchhhh
Confidence 5 4777777543 111 12345567778888888889999999999999998533 2233322222
Q ss_pred --ceEEEe--cCCeEEEEEcC--ceEEEEcCCCCcccccCCCCC-CCCEEE---EccCCeEEEEeCCeE-E-EEcCCCCc
Q 001851 160 --VKSMSW--CGENICIAIRK--GYMILNATNGALSEVFPSGRI-GPPLVV---SLLSGELLLGKENIG-V-FVDQNGKL 227 (1004)
Q Consensus 160 --~~~l~~--~~~~i~v~~~~--~y~lidl~~~~~~~L~~~~~~-~~p~i~---~~~~~E~Ll~~~~~g-v-fv~~~G~~ 227 (1004)
+..+.| .++.++++..+ +..++++.+++-.++.+.... ..|.|+ ..++|+++.+.+..| + .+|..+..
T Consensus 429 ~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 429 LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence 222333 46777777754 455667777665555543322 234333 347888887655443 3 35776653
Q ss_pred c
Q 001851 228 L 228 (1004)
Q Consensus 228 ~ 228 (1004)
.
T Consensus 509 ~ 509 (691)
T KOG2048|consen 509 S 509 (691)
T ss_pred e
Confidence 3
No 79
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.42 E-value=10 Score=42.60 Aligned_cols=177 Identities=14% Similarity=0.098 Sum_probs=102.2
Q ss_pred eEEEeCCC---CcccccccCCCCcEEEEecCCCcEEEEEE--CCeEEEEEecCCCceeEeeeeecCCCceEEEec--CCe
Q 001851 97 IAFHRLPN---LETIAVLTKAKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GEN 169 (1004)
Q Consensus 97 v~~~~L~~---l~~~~~i~~~kg~~~f~~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~ 169 (1004)
|.+|++.+ ++.+..++...+.+.++++++...|+|+. .+.|..|.+..+..+.....+..++.|..+++. |+.
T Consensus 14 I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~ 93 (330)
T PRK11028 14 IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRF 93 (330)
T ss_pred EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCE
Confidence 88888742 23334444445677788888777787763 577888888632245555567777788899988 567
Q ss_pred EEEEEc--CceEEEEcCC-CCcccccCC-CCCCCCE-EEEccCCeEEEEe---CCeEEEEc--CCCCccc--Cc--ceee
Q 001851 170 ICIAIR--KGYMILNATN-GALSEVFPS-GRIGPPL-VVSLLSGELLLGK---ENIGVFVD--QNGKLLQ--AD--RICW 235 (1004)
Q Consensus 170 i~v~~~--~~y~lidl~~-~~~~~L~~~-~~~~~p~-i~~~~~~E~Ll~~---~~~gvfv~--~~G~~~~--~~--~i~w 235 (1004)
++++.. ....++|+++ |........ .....|. +..-+++.+++.. ++....++ ..|.... .. .+.=
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 888864 5567888863 432221111 1111233 3234566666432 23333343 3453321 11 1222
Q ss_pred cCCCceEEEeC--CeEEEEcC--CeeEEEEccC-CC--ceeEEEe
Q 001851 236 SEAPIAVIIQK--PYAIALLP--RRVEVRSLRV-PY--ALIQTIV 273 (1004)
Q Consensus 236 ~~~P~~i~~~~--PYll~~~~--~~ieV~~l~~-~~--~lvQti~ 273 (1004)
...|..+++.. .|+++... +.|-++++.. ++ .++|++.
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 45688888764 48888775 7888888842 12 4567765
No 80
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.38 E-value=21 Score=46.69 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=37.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001851 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (1004)
Q Consensus 303 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (1004)
+..-+..|+..|++++|+.+++.+...+- .. .-.-++......+-..+.+++|+..|..
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-v~--~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGL-LD--MDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCC-CC--chHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45667888899999999999987642221 11 1112222223334567889999988765
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.34 E-value=0.62 Score=48.31 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=112.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c-eEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~ 103 (1004)
.++|+-|..+-.|.+|+++....+ +. .+.+ +...|..+.-+.+.+.+|.-+| + |.+|+..
T Consensus 112 s~~lltgg~ekllrvfdln~p~Ap-------------p~----E~~g-htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKAP-------------PK----EISG-HTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred chhhhccchHHHhhhhhccCCCCC-------------ch----hhcC-CCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 368999999999999998764321 11 1222 3457888777777677776676 4 9999987
Q ss_pred CCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCC-eEEEEEcCc--eEE
Q 001851 104 NLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE-NICIAIRKG--YMI 180 (1004)
Q Consensus 104 ~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~-~i~v~~~~~--y~l 180 (1004)
+...+.++...-.++..-+..+...|.++-.+.|.++... .|..+|++.+|-.+.+-...-+ -++|+-... .+.
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdak---sf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~k 250 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAK---SFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYK 250 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccc---cccceeeccCccccccccccCCCceEEecCcceEEEE
Confidence 7766677777777888888777667778888888887765 5888999999988887776632 344444433 455
Q ss_pred EEcCCCCcccccCCCCCCCCE--EEEccCCeE
Q 001851 181 LNATNGALSEVFPSGRIGPPL--VVSLLSGEL 210 (1004)
Q Consensus 181 idl~~~~~~~L~~~~~~~~p~--i~~~~~~E~ 210 (1004)
+|..||.-...+..+..+ |+ +...+++|+
T Consensus 251 fDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 251 FDYNTGEEIGSYNKGHFG-PVHCVRFSPDGEL 281 (334)
T ss_pred EeccCCceeeecccCCCC-ceEEEEECCCCce
Confidence 799999877776444322 33 333466665
No 82
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.29 E-value=4.3 Score=48.03 Aligned_cols=189 Identities=16% Similarity=0.210 Sum_probs=117.8
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
.-|.+++.. +..+.=|+.|++|.+|++... ....+++++ +...|..+...|..++++.-+
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-----------------~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-----------------GRNLKTLKG-HSTYVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCC-----------------CeEEEEecC-CCCceEEEEecCCCCEEEEec
Confidence 356655554 468999999999999998432 123344443 467899999999987777776
Q ss_pred C-c-eEEEeCCCCcccccccC-CCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeecCC---CceEEEec-
Q 001851 95 E-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPD---TVKSMSWC- 166 (1004)
Q Consensus 95 d-~-v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l~d---~~~~l~~~- 166 (1004)
+ + |.+|++.+.+....+.. ..+++..+++.+...++.+. .+.|.+|....+ .+...+++.-.+ ++.+++|.
T Consensus 266 ~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG-SKLCLKLLSGAENSAPVTSVQFSP 344 (456)
T ss_pred CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC-ceeeeecccCCCCCCceeEEEECC
Confidence 5 4 99999987555544433 34788888888777777774 566777776643 222234433232 34667775
Q ss_pred -CCeEEEEEcC-ceEEEEcCCCCcccccCCCCCC-CCEE--EEccCCeEEE-Ee-CCeEEEEcCC
Q 001851 167 -GENICIAIRK-GYMILNATNGALSEVFPSGRIG-PPLV--VSLLSGELLL-GK-ENIGVFVDQN 224 (1004)
Q Consensus 167 -~~~i~v~~~~-~y~lidl~~~~~~~L~~~~~~~-~p~i--~~~~~~E~Ll-~~-~~~gvfv~~~ 224 (1004)
+..++.++.. .-.+.|+.++.....+...... ..+. .....+++++ +. |....+.+..
T Consensus 345 ~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 345 NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 4677777764 7888899887544333321111 1111 1134567765 43 4444455654
No 83
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=94.25 E-value=2 Score=49.26 Aligned_cols=253 Identities=16% Similarity=0.148 Sum_probs=136.3
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c-eEEEeCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRLPN 104 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~ 104 (1004)
+.++|.++||.+.+.+-.+. ..+... .+..+|..=.--++..-|++.++ | |+.|.=+.
T Consensus 76 d~~~i~s~DGkf~il~k~~r-------------------VE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG 135 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-------------------VERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG 135 (737)
T ss_pred ceEEEEcCCceEEEecccch-------------------hhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEeccc
Confidence 47899999999877653221 111111 12234444444556666777776 6 88887443
Q ss_pred CcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCCeEEEEEcCceEEEEcC
Q 001851 105 LETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNAT 184 (1004)
Q Consensus 105 l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~~i~v~~~~~y~lidl~ 184 (1004)
.=-.........+.|.++++++..++....+-+.|-.+.... +.++=-.-.+.+.++.|....=.+++..+=+-+-+.
T Consensus 136 MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~--k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 136 MLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANS--KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred hHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccc--ceeEEeccCcEEEEeecCccccceeecCCceeEEee
Confidence 211111234455677888888766665555555554444211 111111224567788888532233333333344455
Q ss_pred CCCcccccCCCCCCCCE--EEEccCCeEEEEeCCeEEEEcC-CCCcccCcceeecCCCceEEE--eCCeEEEE-------
Q 001851 185 NGALSEVFPSGRIGPPL--VVSLLSGELLLGKENIGVFVDQ-NGKLLQADRICWSEAPIAVII--QKPYAIAL------- 252 (1004)
Q Consensus 185 ~~~~~~L~~~~~~~~p~--i~~~~~~E~Ll~~~~~gvfv~~-~G~~~~~~~i~w~~~P~~i~~--~~PYll~~------- 252 (1004)
++.-..||+......|+ +.+-++..|+++.-++.-|-.. .|. -..+.|+..-..+++ ....++..
T Consensus 214 D~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GS---ifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l 290 (737)
T KOG1524|consen 214 DAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGS---IFNLSWSADGTQATCGTSTGQLIVAYAIEQQL 290 (737)
T ss_pred cccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccc---eEEEEEcCCCceeeccccCceEEEeeeehhhh
Confidence 55556677654333443 4455677788887666655432 333 246788765554432 11222211
Q ss_pred ---------cC-CeeEEEEccCCCceeEEEeeCCccc-cccCCCeEEEEeCCeEEEecccChHHH
Q 001851 253 ---------LP-RRVEVRSLRVPYALIQTIVLQNVRH-LIPSSNAVVVALENSIFGLFPVPLGAQ 306 (1004)
Q Consensus 253 ---------~~-~~ieV~~l~~~~~lvQti~l~~~~~-l~~~~~~v~vas~~~i~~l~~~~~~~q 306 (1004)
.+ ..|+++++.. + ....+.+|.... ..-.-+.+++++...||.+....+..+
T Consensus 291 ~~~n~~~t~~~r~~I~vrdV~~-~-v~d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntp 353 (737)
T KOG1524|consen 291 VSGNLKATSKSRKSITVRDVAT-G-VQDILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTP 353 (737)
T ss_pred hhccceeEeeccceEEeehhhh-h-HHHHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCc
Confidence 11 2477776641 2 223344444321 122345677899999999999998887
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.18 E-value=3 Score=47.67 Aligned_cols=261 Identities=13% Similarity=0.160 Sum_probs=144.9
Q ss_pred EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc--eEE
Q 001851 22 VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES--IAF 99 (1004)
Q Consensus 22 i~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~--v~~ 99 (1004)
++..|-+++-|.=|-++..|+..+-... .+.+. +..--...+|..+...+..+.+||+++. ..+
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------~~~fr---~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDAS-----------MRSFR---QLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred ecCCCceeeeccccceEEEEeccccccc-----------chhhh---ccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 4555789999999999999999875432 11111 1111124589999999999999999983 788
Q ss_pred EeCCCCccc---------ccccCCCC----cEEEEecCCCc--EEEEEECCeEEEEEecCCC-ceeEeeeeec---CCCc
Q 001851 100 HRLPNLETI---------AVLTKAKG----ANVYSWDDRRG--FLCFARQKRVCIFRHDGGR-GFVEVKDFGV---PDTV 160 (1004)
Q Consensus 100 ~~L~~l~~~---------~~i~~~kg----~~~f~~~~~~~--~l~V~~kkki~l~~~~~~~-~f~~~kEi~l---~d~~ 160 (1004)
++=..++.. ..+..+|| +++-|+++... .|-.+-...+.+|...... +.+.+|-... --+|
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 876555322 22344454 45667777654 3444567788888876321 2222222111 1357
Q ss_pred eEEEec--CCeEEEEEcCc-eEEEEcCCCCcccccCCCCC-----CCCEEEEccCCeEEEEe--CCeEEEEcCCCCcccC
Q 001851 161 KSMSWC--GENICIAIRKG-YMILNATNGALSEVFPSGRI-----GPPLVVSLLSGELLLGK--ENIGVFVDQNGKLLQA 230 (1004)
Q Consensus 161 ~~l~~~--~~~i~v~~~~~-y~lidl~~~~~~~L~~~~~~-----~~p~i~~~~~~E~Ll~~--~~~gvfv~~~G~~~~~ 230 (1004)
++.+|. |..|..|+..+ ..+-+..+-.+.+.+-..+. .-.+|....++.+|+.+ |+..=.-|... .++
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq--~kk 398 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ--FKK 398 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc--ccc
Confidence 888897 45777777643 45555533333333322211 12345556778888854 33333333221 112
Q ss_pred cceeecCCCceE-----EEeC--CeEEEEcC-------CeeEEEEccCCCceeEEEeeCCccccccCC----CeEEEEe-
Q 001851 231 DRICWSEAPIAV-----IIQK--PYAIALLP-------RRVEVRSLRVPYALIQTIVLQNVRHLIPSS----NAVVVAL- 291 (1004)
Q Consensus 231 ~~i~w~~~P~~i-----~~~~--PYll~~~~-------~~ieV~~l~~~~~lvQti~l~~~~~l~~~~----~~v~vas- 291 (1004)
.-..|.+-|..+ +|.. --|++-++ +.+.+++-. +...||+|.++........| +.|++.+
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~-t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM-TLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc-ceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 334566555432 2221 13333222 247777775 57899999998764433222 3455554
Q ss_pred CCeEEEec
Q 001851 292 ENSIFGLF 299 (1004)
Q Consensus 292 ~~~i~~l~ 299 (1004)
++.++++.
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 34444444
No 85
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=94.17 E-value=0.37 Score=55.80 Aligned_cols=106 Identities=11% Similarity=0.215 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc-Ccee-eeeCc-eEEEeCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR-QLLL-SLSES-IAFHRLP 103 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~-~~ll-~l~d~-v~~~~L~ 103 (1004)
++|.|||++|.|.+|.+..+.-++. ..+..+..+ .+.-+|..|..-|-. ++|+ ...|. |.+|+|.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~-----------~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPEN-----------EMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcc-----------cCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 6899999999999999987654321 111222222 345678888877644 4443 45574 9999987
Q ss_pred CCcccccc-cCCCCcEEEEecCCCcEEEE-EECCeEEEEEecC
Q 001851 104 NLETIAVL-TKAKGANVYSWDDRRGFLCF-ARQKRVCIFRHDG 144 (1004)
Q Consensus 104 ~l~~~~~i-~~~kg~~~f~~~~~~~~l~V-~~kkki~l~~~~~ 144 (1004)
+.+....+ ..+.++-.|+++++..+++- +...+|.+|+-..
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 64433332 33455667899888766664 4678999998653
No 86
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.17 E-value=1.1 Score=53.06 Aligned_cols=157 Identities=14% Similarity=0.241 Sum_probs=101.4
Q ss_pred ccCCCCcEEEEEEeCC----EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc
Q 001851 12 ISNCSPKIDAVASYGL----KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR 87 (1004)
Q Consensus 12 ~~~~~~~I~ci~~~~~----~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~ 87 (1004)
+...|+-|++++.+++ -|+.|..||.++.|++....+ +.. ....++++|+.|...+..
T Consensus 143 fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-----------------cl~-~~~~H~S~vtsL~~~~d~ 204 (775)
T KOG0319|consen 143 FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-----------------CLH-TMILHKSAVTSLAFSEDS 204 (775)
T ss_pred ecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-----------------HHH-HHHhhhhheeeeeeccCC
Confidence 3456788999999985 468999999999999874321 111 112357789999988887
Q ss_pred Cceeeee-Cc-eEEEeCCCCcccc------------ccc---CCCCcEEEEecCC-------------------------
Q 001851 88 QLLLSLS-ES-IAFHRLPNLETIA------------VLT---KAKGANVYSWDDR------------------------- 125 (1004)
Q Consensus 88 ~~ll~l~-d~-v~~~~L~~l~~~~------------~i~---~~kg~~~f~~~~~------------------------- 125 (1004)
.-++..+ |. +.+|++-+.+... .+. ..||-.+++.+.+
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~ 284 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI 284 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh
Confidence 7777666 44 8888874432111 111 1123334433221
Q ss_pred ---------CcEEEEEECCeEEEEEecCCCceeEeee-eecCCCceEEEecC---CeEEEEEc-CceEEEEcCCCCcc
Q 001851 126 ---------RGFLCFARQKRVCIFRHDGGRGFVEVKD-FGVPDTVKSMSWCG---ENICIAIR-KGYMILNATNGALS 189 (1004)
Q Consensus 126 ---------~~~l~V~~kkki~l~~~~~~~~f~~~kE-i~l~d~~~~l~~~~---~~i~v~~~-~~y~lidl~~~~~~ 189 (1004)
...++|.....|.+|+.+ ..+..|. +-..|.|..|.|.| +.++||+. ..+.++++.+....
T Consensus 285 ~~~~~~~~~~~~l~vtaeQnl~l~d~~---~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ 359 (775)
T KOG0319|consen 285 DHLLAIESMSQLLLVTAEQNLFLYDED---ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ 359 (775)
T ss_pred hcceeccccCceEEEEccceEEEEEcc---ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE
Confidence 023566677777788544 2344454 35689999999998 78999987 56888887765443
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.17 E-value=5.8 Score=42.65 Aligned_cols=192 Identities=11% Similarity=0.170 Sum_probs=112.6
Q ss_pred CCceeEEEEecccCceeeee--Cc-eEEEeCCC---CcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCc
Q 001851 75 KKPILSMEVLASRQLLLSLS--ES-IAFHRLPN---LETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRG 147 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~--d~-v~~~~L~~---l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~ 147 (1004)
...|..|...|....+++-+ |+ |.+|.+.. +.+.........+.++|++++...++.+ ..|.+.+|.+..+ +
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-Q 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-C
Confidence 45788888888655555444 55 99999854 3333334455677889998888888887 7889999998744 3
Q ss_pred eeEeeeeecC-CCceEEEecCCeE--EEEEcC---ceEEEEcCCCC-cccccCCCCCCCCEEEEccCCeEE-EE-eCCeE
Q 001851 148 FVEVKDFGVP-DTVKSMSWCGENI--CIAIRK---GYMILNATNGA-LSEVFPSGRIGPPLVVSLLSGELL-LG-KENIG 218 (1004)
Q Consensus 148 f~~~kEi~l~-d~~~~l~~~~~~i--~v~~~~---~y~lidl~~~~-~~~L~~~~~~~~p~i~~~~~~E~L-l~-~~~~g 218 (1004)
. ..+... .+++++.|.+... |+++.+ ....-|+.+.. +..+--+++ -... -...+++ ++ .+.-.
T Consensus 106 ~---~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---vYa~-Dv~~pm~vVata~r~i 178 (347)
T KOG0647|consen 106 V---SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---VYAA-DVLYPMAVVATAERHI 178 (347)
T ss_pred e---eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---eeeh-hccCceeEEEecCCcE
Confidence 3 334444 5788999997554 776653 23333444321 111111111 1111 0112333 33 34444
Q ss_pred EEEcCCCCccc----CcceeecCCCceEEEe-CCeEEEEcCCeeEEEEccCCCceeEEEeeC
Q 001851 219 VFVDQNGKLLQ----ADRICWSEAPIAVIIQ-KPYAIALLPRRVEVRSLRVPYALIQTIVLQ 275 (1004)
Q Consensus 219 vfv~~~G~~~~----~~~i~w~~~P~~i~~~-~PYll~~~~~~ieV~~l~~~~~lvQti~l~ 275 (1004)
+.++..+.++. .+++.|-..-.++.-. .-|.+|-.++.+.|+.+. +....+.+.|+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id-~~~~~~nFtFk 239 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID-DPNPKDNFTFK 239 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC-CCCccCceeEE
Confidence 55677655442 3567775544443322 568888888999999995 44335555554
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.15 E-value=4.5 Score=43.67 Aligned_cols=178 Identities=18% Similarity=0.224 Sum_probs=110.2
Q ss_pred CCceeEEEEecccC--ceeeeeC-c-eEEEeCCCCcccccccC-CCCcEEEEecCCCcE--EEEEECCeEEEEEecCCCc
Q 001851 75 KKPILSMEVLASRQ--LLLSLSE-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGF--LCFARQKRVCIFRHDGGRG 147 (1004)
Q Consensus 75 k~~I~qI~~l~~~~--~ll~l~d-~-v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~--l~V~~kkki~l~~~~~~~~ 147 (1004)
...|+.++.-+... -|+..+| | |.+|+...++.+.++.. ...++.+++.+. ++ |.|+..+.+.++-+-.|+.
T Consensus 83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcCcc
Confidence 45788887777663 6777776 6 99999877765554322 233788888876 44 5556677888877665542
Q ss_pred -eeEeeeeecCCCceEEEec--CCeEEEEEcCceEEEEcCCCCcccccCCCCCCCCE-EEEccCCeEEEEeCCeEE-EEc
Q 001851 148 -FVEVKDFGVPDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELLLGKENIGV-FVD 222 (1004)
Q Consensus 148 -f~~~kEi~l~d~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~E~Ll~~~~~gv-fv~ 222 (1004)
|. ..+...++.+.|. |+..+++.++...++-+.+..+..-.... .+++ +.++..++++++-|+-.+ +.|
T Consensus 162 a~v----~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 162 AFV----LNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP--KRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred cee----eccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc--ccceeeeecCCceEEEecCCceEEEec
Confidence 32 2356667778897 67888888888888887776432211111 2344 445566677777766443 445
Q ss_pred CC-CCcccCcceeecCCCc---eEE-EeC---CeEEEEcC-CeeEEEEcc
Q 001851 223 QN-GKLLQADRICWSEAPI---AVI-IQK---PYAIALLP-RRVEVRSLR 263 (1004)
Q Consensus 223 ~~-G~~~~~~~i~w~~~P~---~i~-~~~---PYll~~~~-~~ieV~~l~ 263 (1004)
.+ +.+ .-.+...+. .++ |.. -||+..++ +.|-|.++.
T Consensus 236 ~ds~~~----~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 236 TDSDTP----LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred cCCCcc----ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 54 332 233444442 344 333 37777776 678888873
No 89
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=18 Score=44.37 Aligned_cols=246 Identities=12% Similarity=0.176 Sum_probs=125.9
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
.-|+-++.|+ --++=|.+|-.+..|...+... |+.- +.++ +-.+|+.+..-|..++++.-+
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa---------------WEvD-tcrg-H~nnVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA---------------WEVD-TCRG-HYNNVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccc---------------eeeh-hhhc-ccCCcceEEecCccceeEecC
Confidence 4566677777 3567788888888888776443 4321 1222 356899999999999999888
Q ss_pred C-c-eEEEeCCCCcccccccCCCCcEEE--EecCCCcEEEEEECCeEEEEEecCC--------C-------cee------
Q 001851 95 E-S-IAFHRLPNLETIAVLTKAKGANVY--SWDDRRGFLCFARQKRVCIFRHDGG--------R-------GFV------ 149 (1004)
Q Consensus 95 d-~-v~~~~L~~l~~~~~i~~~kg~~~f--~~~~~~~~l~V~~kkki~l~~~~~~--------~-------~f~------ 149 (1004)
+ + +.||++..-..+.+..+..+ .+. +..+.-...+.|....+.+|++.+. + .|.
T Consensus 270 EDksirVwDm~kRt~v~tfrrend-RFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~ 348 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFRREND-RFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLR 348 (1202)
T ss_pred CCccEEEEecccccceeeeeccCC-eEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecc
Confidence 7 4 99999865333322211111 111 1122212222233333333333210 0 010
Q ss_pred --------Eeeee-ecCCCceEEEec--CCeEEEEE---cCceEEEEcCCCCccccc-CCC-CCCCCEEEEccCCeEEE-
Q 001851 150 --------EVKDF-GVPDTVKSMSWC--GENICIAI---RKGYMILNATNGALSEVF-PSG-RIGPPLVVSLLSGELLL- 212 (1004)
Q Consensus 150 --------~~kEi-~l~d~~~~l~~~--~~~i~v~~---~~~y~lidl~~~~~~~L~-~~~-~~~~p~i~~~~~~E~Ll- 212 (1004)
.+|-. ++-++|.+|.+. .+.+.+.+ ...|.++.+........- +.. +..---.+++..+.|.+
T Consensus 349 t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl 428 (1202)
T KOG0292|consen 349 TQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVL 428 (1202)
T ss_pred ccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEE
Confidence 11110 123677888876 34555542 356888777543211111 000 00001122333333322
Q ss_pred Ee-CCeEEEEcCCCCcccCcceeecCCCceEEEeC-CeEEEEcCCeeEEEEccCCCceeEEEeeCCccccccC
Q 001851 213 GK-ENIGVFVDQNGKLLQADRICWSEAPIAVIIQK-PYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPS 283 (1004)
Q Consensus 213 ~~-~~~gvfv~~~G~~~~~~~i~w~~~P~~i~~~~-PYll~~~~~~ieV~~l~~~~~lvQti~l~~~~~l~~~ 283 (1004)
-+ +..+++-|...+.++ .+.-......|.+.. ..++..++.+|.+++++ ....+-++.++.++..+.+
T Consensus 429 ~k~~~~v~ik~l~N~vtk--kl~~~~~~~~IF~ag~g~lll~~~~~v~lfdvQ-q~~~~~si~~s~vkyvvws 498 (1202)
T KOG0292|consen 429 DKSNEQVVIKNLKNKVTK--KLLLPESTDDIFYAGTGNLLLRSPDSVTLFDVQ-QKKKVGSIKVSKVKYVVWS 498 (1202)
T ss_pred EecCcceEEecccchhhh--cccCcccccceeeccCccEEEEcCCeEEEEEee-cceEEEEEecCceeEEEEc
Confidence 22 222233333333332 333333445566664 57888889999999996 4667778888877665543
No 90
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=94.08 E-value=7.4 Score=42.18 Aligned_cols=144 Identities=16% Similarity=0.231 Sum_probs=98.2
Q ss_pred CCCCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCcee
Q 001851 14 NCSPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (1004)
Q Consensus 14 ~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll 91 (1004)
.+...|+|.+... ..+.++.++-.+++|...++. .|+..++.. -+.+.|+-|.-.|..|.++
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~---------------~w~~~htls-~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD---------------LWEPAHTLS-EHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCC---------------Cceeceehh-hhCcceeEEeecCCCCcee
Confidence 4567889987664 479999999999999876543 355544432 3467899999999999999
Q ss_pred eee-C-ceEEEeCCC---Cccccc-ccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeee--eecCCCceE
Q 001851 92 SLS-E-SIAFHRLPN---LETIAV-LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD--FGVPDTVKS 162 (1004)
Q Consensus 92 ~l~-d-~v~~~~L~~---l~~~~~-i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kE--i~l~d~~~~ 162 (1004)
+++ | +-.|+..++ .++... +...+-++++.+.+....++|+ ..|.|.+..+...+.+..-|- .++-.++.+
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 997 4 578888732 233222 3445677888888888899998 455666666553333422232 344578899
Q ss_pred EEecCCeEEEE
Q 001851 163 MSWCGENICIA 173 (1004)
Q Consensus 163 l~~~~~~i~v~ 173 (1004)
+.|.-+.+..+
T Consensus 152 ldWhpnnVLla 162 (361)
T KOG1523|consen 152 LDWHPNNVLLA 162 (361)
T ss_pred eeccCCcceec
Confidence 99996654444
No 91
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.97 E-value=1.9 Score=47.40 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=97.0
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC--CCCceeEEEEecccCceee
Q 001851 15 CSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF--SKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 15 ~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~k~~I~qI~~l~~~~~ll~ 92 (1004)
+|..|-||-...++|+|--++- ||+|++..- .+..+.... ..+.+..+.+-.....+..
T Consensus 86 fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~M------------------klLhTI~t~~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 86 FPTSILAVRMNRKRLVVCLEES-IYIYDIKDM------------------KLLHTIETTPPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred cCCceEEEEEccceEEEEEccc-EEEEecccc------------------eeehhhhccCCCccceEeeccCCCCceEEe
Confidence 4778889999899999988887 999998752 222222222 2334555554444333332
Q ss_pred eeC---c-eEEEeCCCCcccccccCCCC-cEEEEecCCCcEEEEEECC-e-EEEEEecCCCceeEeeeeecCCCceEEEe
Q 001851 93 LSE---S-IAFHRLPNLETIAVLTKAKG-ANVYSWDDRRGFLCFARQK-R-VCIFRHDGGRGFVEVKDFGVPDTVKSMSW 165 (1004)
Q Consensus 93 l~d---~-v~~~~L~~l~~~~~i~~~kg-~~~f~~~~~~~~l~V~~kk-k-i~l~~~~~~~~f~~~kEi~l~d~~~~l~~ 165 (1004)
=.. | |.+|++.++.++..+.--+| +-+.+++.+...|+-|..| . |.+|....|..+.+.|-=..+-.+-+++|
T Consensus 147 p~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred cCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 222 4 99999999988877765555 3467888776677777443 3 56888876644433332122667788888
Q ss_pred cC--CeEEEEEcC-ceEEEEcCCC
Q 001851 166 CG--ENICIAIRK-GYMILNATNG 186 (1004)
Q Consensus 166 ~~--~~i~v~~~~-~y~lidl~~~ 186 (1004)
.. .+||++..+ -.+++-+.+.
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEeccc
Confidence 74 467666654 4666666553
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.55 E-value=1.3 Score=49.77 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=78.6
Q ss_pred CcEEEEEEeC---------CEEEEEeC---------C-CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCc
Q 001851 17 PKIDAVASYG---------LKILLGCS---------D-GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKP 77 (1004)
Q Consensus 17 ~~I~ci~~~~---------~~L~iGt~---------~-G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~ 77 (1004)
..++|++.+. .+++|||. . |.|++|.+...+.. .....++.+.. + +.+
T Consensus 24 E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-----------~~~l~~i~~~~-~-~g~ 90 (321)
T PF03178_consen 24 EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-----------NFKLKLIHSTE-V-KGP 90 (321)
T ss_dssp EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEEEE-E-SS-
T ss_pred ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc-----------ceEEEEEEEEe-e-cCc
Confidence 4677777763 47899997 2 99999998874211 11223332221 2 679
Q ss_pred eeEEEEecccCceeeeeC-ceEEEeCCCCc---ccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecC-CCceeEe
Q 001851 78 ILSMEVLASRQLLLSLSE-SIAFHRLPNLE---TIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDG-GRGFVEV 151 (1004)
Q Consensus 78 I~qI~~l~~~~~ll~l~d-~v~~~~L~~l~---~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~-~~~f~~~ 151 (1004)
|..|.... +.+++-.+ .|.+|++..-+ +..... .+....++......|+|+ ..+.+.+++|+. ++.+..+
T Consensus 91 V~ai~~~~--~~lv~~~g~~l~v~~l~~~~~l~~~~~~~--~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 91 VTAICSFN--GRLVVAVGNKLYVYDLDNSKTLLKKAFYD--SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp EEEEEEET--TEEEEEETTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred ceEhhhhC--CEEEEeecCEEEEEEccCcccchhhheec--ceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 99999994 44555555 48898875433 111111 111222333334578888 789999999985 2234443
Q ss_pred eeeecCCCceEEEec-C-CeEEEEEcC
Q 001851 152 KDFGVPDTVKSMSWC-G-ENICIAIRK 176 (1004)
Q Consensus 152 kEi~l~d~~~~l~~~-~-~~i~v~~~~ 176 (1004)
..-..+-.+.++.+. + +.++++.+.
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCC
Confidence 221224445666655 2 355555543
No 93
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=93.54 E-value=0.15 Score=47.21 Aligned_cols=54 Identities=24% Similarity=0.116 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCC
Q 001851 703 RKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCV 757 (1004)
Q Consensus 703 r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D 757 (1004)
...+..||+..+.-|++.+-..+....++.|.+.+|..-|+|++||+++. ++.+
T Consensus 14 ~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~-~l~~ 67 (108)
T PF10366_consen 14 PSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLK-KLAD 67 (108)
T ss_pred HHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHH-HHhc
Confidence 46899999988778999998888888899999999999999999999998 4433
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.25 E-value=1.4 Score=52.87 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=95.7
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 15 CSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 15 ~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
-...|.|+...++.++-|+.||.|.+|++.. .++.++..+ +..+|..+.+-.+ +.++.-+
T Consensus 330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~------------------~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT------------------GKCLKSLSG-HTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred ccccEEEEEecCCEEEEEecCceEEEEEhhh------------------ceeeeeecC-CcceEEEEEecCc-ceEEeee
Confidence 3468999999999999999999999999762 345555555 5668999866654 6666544
Q ss_pred -Cc-eEEEeCCCC-cccccccCCCCcEEEEecCC-CcEEEE--EECCeEEEEEecCCCceeEeeeeecC--CCceEEEec
Q 001851 95 -ES-IAFHRLPNL-ETIAVLTKAKGANVYSWDDR-RGFLCF--ARQKRVCIFRHDGGRGFVEVKDFGVP--DTVKSMSWC 166 (1004)
Q Consensus 95 -d~-v~~~~L~~l-~~~~~i~~~kg~~~f~~~~~-~~~l~V--~~kkki~l~~~~~~~~f~~~kEi~l~--d~~~~l~~~ 166 (1004)
|+ |.+|++.+. +-+.++..-.++. -+.. .+...+ ...++|.++....+. .++.+..+ ..+.++++.
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v---~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~---~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTSLV---SSLLLRDNFLVSSSADGTIKLWDAEEGE---CLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCcccc---cccccccceeEeccccccEEEeecccCc---eeeeeccCCcccEEEeecC
Confidence 54 999999887 5444432222211 1111 122223 366778787655332 33333332 456667765
Q ss_pred -CCeEEEEEcCceEEEEcCCCCcc
Q 001851 167 -GENICIAIRKGYMILNATNGALS 189 (1004)
Q Consensus 167 -~~~i~v~~~~~y~lidl~~~~~~ 189 (1004)
...+|.+....+.+.|+.+|...
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cceEEEEecCCeeEEEecccCchh
Confidence 44566666788999999998643
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.16 E-value=2.6 Score=45.17 Aligned_cols=150 Identities=11% Similarity=0.167 Sum_probs=99.0
Q ss_pred CCCCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCcee
Q 001851 14 NCSPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (1004)
Q Consensus 14 ~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll 91 (1004)
+.+..|-|++..+ ..+|+|.-||.+..|++..+.. ++ -+.+..||..+.-++..+.=+
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-------------------~~-v~~Hd~pvkt~~wv~~~~~~c 129 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-------------------SQ-VAAHDAPVKTCHWVPGMNYQC 129 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-------------------ee-eeecccceeEEEEecCCCcce
Confidence 4456787887764 5999999999999999886432 11 124577999999998776334
Q ss_pred eeeC----ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCC-CceeEeeeeecCCCceEEEe
Q 001851 92 SLSE----SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGG-RGFVEVKDFGVPDTVKSMSW 165 (1004)
Q Consensus 92 ~l~d----~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~-~~f~~~kEi~l~d~~~~l~~ 165 (1004)
+.++ .|++|+...-.++.++.- .-.++|.|.....++|+ ..|.|.+|.+.++ .+|+.+ +-++.-.+++++.
T Consensus 130 l~TGSWDKTlKfWD~R~~~pv~t~~L--PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~ 206 (347)
T KOG0647|consen 130 LVTGSWDKTLKFWDTRSSNPVATLQL--PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVAC 206 (347)
T ss_pred eEecccccceeecccCCCCeeeeeec--cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEE
Confidence 4444 299999765555544321 12577888777778887 7889999999743 234332 3446667788876
Q ss_pred cC--CeEEEEEcCc-eEEEEcCCC
Q 001851 166 CG--ENICIAIRKG-YMILNATNG 186 (1004)
Q Consensus 166 ~~--~~i~v~~~~~-y~lidl~~~ 186 (1004)
+. +.-.+|.-.+ ..+-.++.+
T Consensus 207 f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 207 FQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred EecCCceEeeeecceEEEEecCCC
Confidence 62 3446666544 444455554
No 96
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.04 E-value=19 Score=40.79 Aligned_cols=246 Identities=17% Similarity=0.250 Sum_probs=136.8
Q ss_pred EEEEEeCC----CcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-----c-e
Q 001851 28 KILLGCSD----GSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-----S-I 97 (1004)
Q Consensus 28 ~L~iGt~~----G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-----~-v 97 (1004)
.+|||+=. |.|+.|.++.... ......... ....-..|.+.+..++|.+..+ + |
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g--------------~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v 64 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETG--------------TLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGV 64 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTT--------------EEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCC--------------CceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCE
Confidence 47899887 7899999854322 222222211 2345667778888888988865 2 8
Q ss_pred EEEeCCC----Cccccccc-CCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEee-eee-----------cCC
Q 001851 98 AFHRLPN----LETIAVLT-KAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVK-DFG-----------VPD 158 (1004)
Q Consensus 98 ~~~~L~~----l~~~~~i~-~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~k-Ei~-----------l~d 158 (1004)
..|.+.. ++.+..+. ...+...++++++...++|+ ....+.+|.+.....+.... .+. ...
T Consensus 65 ~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~ 144 (345)
T PF10282_consen 65 SSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGP 144 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSST
T ss_pred EEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccc
Confidence 8888754 33444333 34444567888888888888 57889999997532232221 121 123
Q ss_pred CceEEEec--CCeEEEEEc--CceEEEEcCCCC--ccc----ccCCCCCCCCE-EEEccCCeEEEEe----CCeEEE-Ec
Q 001851 159 TVKSMSWC--GENICIAIR--KGYMILNATNGA--LSE----VFPSGRIGPPL-VVSLLSGELLLGK----ENIGVF-VD 222 (1004)
Q Consensus 159 ~~~~l~~~--~~~i~v~~~--~~y~lidl~~~~--~~~----L~~~~~~~~p~-i~~~~~~E~Ll~~----~~~gvf-v~ 222 (1004)
.|+++.+. |+.++++.. ....++++..+. ... -++.+. -|. +..-+++.++.+. +.+.+| ++
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~--GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS--GPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC--CCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 46677776 467887765 457778887654 322 123343 233 4344566665432 223333 33
Q ss_pred -CCCCcccC---cce--eecC--CCceEEEe--CCeEEEEcC--CeeEEEEcc-CCC--ceeEEEeeCC--cccc--ccC
Q 001851 223 -QNGKLLQA---DRI--CWSE--APIAVIIQ--KPYAIALLP--RRVEVRSLR-VPY--ALIQTIVLQN--VRHL--IPS 283 (1004)
Q Consensus 223 -~~G~~~~~---~~i--~w~~--~P~~i~~~--~PYll~~~~--~~ieV~~l~-~~~--~lvQti~l~~--~~~l--~~~ 283 (1004)
..|..... .++ .|.. .|..+++. .-||++-.. +.|-|+.+. .++ ..++.++..+ ++.+ ...
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 34532211 111 2333 35667765 568887765 689999983 123 4566666632 3433 345
Q ss_pred CCeEEEEe
Q 001851 284 SNAVVVAL 291 (1004)
Q Consensus 284 ~~~v~vas 291 (1004)
++-++++.
T Consensus 303 g~~l~Va~ 310 (345)
T PF10282_consen 303 GRYLYVAN 310 (345)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 55666665
No 97
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=92.76 E-value=8.3 Score=42.48 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=91.5
Q ss_pred cEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC
Q 001851 18 KIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (1004)
Q Consensus 18 ~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d 95 (1004)
.|+=+..|. ..|+.|++||.+..|.+..... .+.+.+ +..+++.=.++|....+++..+
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~------------------~kv~~G-h~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL------------------CKVMSG-HNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcce------------------eeEecC-CCCCcccccccCCCceEEEEec
Confidence 444455553 6899999999999999876321 122222 4667888888898888888876
Q ss_pred -c-eEEEeCCCCccccccc---------------------CCCCcEE-----------EEecCC-------C--------
Q 001851 96 -S-IAFHRLPNLETIAVLT---------------------KAKGANV-----------YSWDDR-------R-------- 126 (1004)
Q Consensus 96 -~-v~~~~L~~l~~~~~i~---------------------~~kg~~~-----------f~~~~~-------~-------- 126 (1004)
+ |.+|++.+-.+...+. ..+++.+ +|.+.. .
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 5 8888876544332221 1111111 111210 0
Q ss_pred --------cEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecC-CeEEEEEcCc-eEEEEcCCCCcc
Q 001851 127 --------GFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG-ENICIAIRKG-YMILNATNGALS 189 (1004)
Q Consensus 127 --------~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~-~~i~v~~~~~-y~lidl~~~~~~ 189 (1004)
...+++ ..++|.||..... ...+....++.++.+.|.+ ..|+-++.++ ..+.|..+|+..
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~---~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAAS---TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hcccccccchhhcccccceEEEEecccc---hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceE
Confidence 112333 6778888887632 1223345677888899988 6777777754 667788888643
No 98
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.63 E-value=23 Score=40.61 Aligned_cols=124 Identities=10% Similarity=0.113 Sum_probs=69.0
Q ss_pred ecCCeEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEe-CCeEEEEcC-CCCcccCcceeecCCC--
Q 001851 165 WCGENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGK-ENIGVFVDQ-NGKLLQADRICWSEAP-- 239 (1004)
Q Consensus 165 ~~~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~-~~~gvfv~~-~G~~~~~~~i~w~~~P-- 239 (1004)
..++.++++.. ...+.+|..+|+...-.+.+....|. +.++.+.++. +...+.+|. +|+ +.|....
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~---~~~~~vyv~~~~G~l~~~d~~tG~------~~W~~~~~~ 309 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA---VDDNRLYVTDADGVVVALDRRSGS------ELWKNDELK 309 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce---EeCCEEEEECCCCeEEEEECCCCc------EEEcccccc
Confidence 35778888775 56778999998754433322222333 2344555543 344445554 443 3454321
Q ss_pred ----ceEEEeCCeEEEEcC-CeeEEEEccCCCceeEEEeeCCccc---cccCCCeEEEEeC-CeEEEe
Q 001851 240 ----IAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVRH---LIPSSNAVVVALE-NSIFGL 298 (1004)
Q Consensus 240 ----~~i~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~l~~~~~---l~~~~~~v~vas~-~~i~~l 298 (1004)
.+.+...-+|++... +.+.+.+.. ++.++.++.+.+... ....++.+|+++. +.|+++
T Consensus 310 ~~~~ssp~i~g~~l~~~~~~G~l~~~d~~-tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 310 YRQLTAPAVVGGYLVVGDFEGYLHWLSRE-DGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCccccCEEECCEEEEEeCCCEEEEEECC-CCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 112334556666654 567777775 588888887755321 1224556777665 478876
No 99
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.57 E-value=4 Score=48.83 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=82.6
Q ss_pred CCCcEEEEEEeCCE--EEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 15 CSPKIDAVASYGLK--ILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 15 ~~~~I~ci~~~~~~--L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
.+..++|+..+++. |.||..||.|.+|+...... +. + .+.+|++|+-|+....+..|+.
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-----------------~~-t-fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-----------------LI-T-FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCce-----------------ee-e-ecccccceEEEEEcccCceEee
Confidence 34579999999874 59999999999998764311 11 1 2347999999999887766665
Q ss_pred ee-Cc-eEEEeCCCCcccccccCCCCc-E-EEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCC
Q 001851 93 LS-ES-IAFHRLPNLETIAVLTKAKGA-N-VYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE 168 (1004)
Q Consensus 93 l~-d~-v~~~~L~~l~~~~~i~~~kg~-~-~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~ 168 (1004)
=+ |+ |.+|++-.=.....+..-|.. + .+.++.++-.+.++....|-+|.+..-..|.. -+.--..+-+|++.++
T Consensus 125 GskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~T--hvd~r~Eiw~l~~~~~ 202 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFET--HVDHRGEIWALVLDEK 202 (888)
T ss_pred cCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeE--EecccceEEEEEEecc
Confidence 44 44 999997432222222221211 1 22233222223333444565666552111211 1222345566776674
Q ss_pred e-EEEEEcCceEEEEc
Q 001851 169 N-ICIAIRKGYMILNA 183 (1004)
Q Consensus 169 ~-i~v~~~~~y~lidl 183 (1004)
. |..|...+..++++
T Consensus 203 ~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 203 LLVTAGTDSELKVWEL 218 (888)
T ss_pred eEEEEecCCceEEEEe
Confidence 3 33444567777776
No 100
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=92.48 E-value=24 Score=40.59 Aligned_cols=219 Identities=13% Similarity=0.169 Sum_probs=116.5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc-eEEEeCCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAFHRLPN 104 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~-v~~~~L~~ 104 (1004)
+.+|.|-+..|.++.|....+.-. ++ ...+.+..||-|..+...++.+.+--=++| +.+|.-.+
T Consensus 212 d~nliit~Gk~H~~Fw~~~~~~l~-----------k~----~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 212 DPNLIITCGKGHLYFWTLRGGSLV-----------KR----QGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT 276 (626)
T ss_pred CCcEEEEeCCceEEEEEccCCceE-----------EE----eeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC
Confidence 479999999999999987664321 11 112334567889999998877755433345 89998644
Q ss_pred Ccccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCC---CceEEEecCCeEEEEEcCceE
Q 001851 105 LETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPD---TVKSMSWCGENICIAIRKGYM 179 (1004)
Q Consensus 105 l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d---~~~~l~~~~~~i~v~~~~~y~ 179 (1004)
.....++ ...+|+-+.|.-. .|.|.-+ ..|||. .|++ ..+.++|+.+|| +|++++=-+.-|+||+.+.+.
T Consensus 277 ~~~~k~~~aH~ggv~~L~~lr-~GtllSGgKDRki~--~Wd~--~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDGGVFSLCMLR-DGTLLSGGKDRKII--LWDD--NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCCceEEEEEec-CccEeecCccceEE--eccc--cccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 4322221 2223333333322 2444444 334444 4552 366778888885 678877655459999998887
Q ss_pred EE-EcCCCCcccccCCCCCCCCEEEEccCCeEEEEeC-CeEEEEcCCCCcccCcceeec----CCCceEEEeCCeEEEEc
Q 001851 180 IL-NATNGALSEVFPSGRIGPPLVVSLLSGELLLGKE-NIGVFVDQNGKLLQADRICWS----EAPIAVIIQKPYAIALL 253 (1004)
Q Consensus 180 li-dl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~~-~~gvfv~~~G~~~~~~~i~w~----~~P~~i~~~~PYll~~~ 253 (1004)
+- ++.++-....+-.+...=-+.+...++.|+-|-. ...-.-| ...+.|+ .+...+.|+..=++++.
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-------~~k~~wt~~~~d~~~~~~fhpsg~va~G 424 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-------DHKLEWTKIIEDPAECADFHPSGVVAVG 424 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-------CCceeEEEEecCceeEeeccCcceEEEe
Confidence 76 4555543333332221111122222333333322 2111222 2334443 33344555433244443
Q ss_pred --CCeeEEEEccCCCceeEEE
Q 001851 254 --PRRVEVRSLRVPYALIQTI 272 (1004)
Q Consensus 254 --~~~ieV~~l~~~~~lvQti 272 (1004)
.+.--|.+.. ++.++|.-
T Consensus 425 t~~G~w~V~d~e-~~~lv~~~ 444 (626)
T KOG2106|consen 425 TATGRWFVLDTE-TQDLVTIH 444 (626)
T ss_pred eccceEEEEecc-cceeEEEE
Confidence 4667777775 46565543
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=92.44 E-value=3.9 Score=43.87 Aligned_cols=112 Identities=13% Similarity=0.213 Sum_probs=67.1
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCccccccccccee-eeee-cCCCCCceeEEEEecccCceee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYEL-ERTI-SGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
..+.|+..| |++|+|||+.-++..|++.-. ++ +... ..-++..|+|+...+..++-++
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~------------------QcfvsanPd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY------------------QCFVSANPDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEeccce------------------eEeeecCcccccccceeEEEecCCccEEEE
Confidence 356677776 689999999999999998742 21 0000 0123569999999999888887
Q ss_pred ee-Cc-eEEEeCCCCcccccccCCCCcEEEEe--cCCCcEEEEE--ECCeEEEEEecCCC
Q 001851 93 LS-ES-IAFHRLPNLETIAVLTKAKGANVYSW--DDRRGFLCFA--RQKRVCIFRHDGGR 146 (1004)
Q Consensus 93 l~-d~-v~~~~L~~l~~~~~i~~~kg~~~f~~--~~~~~~l~V~--~kkki~l~~~~~~~ 146 (1004)
-+ || |++|+--+-+=+.++....|-..+|. -...++.+.. ....+-||++..||
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 76 56 99998433332334444444333332 1122333332 33345566665454
No 102
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.41 E-value=16 Score=38.14 Aligned_cols=263 Identities=15% Similarity=0.157 Sum_probs=159.3
Q ss_pred cCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCce
Q 001851 13 SNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL 90 (1004)
Q Consensus 13 ~~~~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~l 90 (1004)
+.-...|.++-.. |++.+-..+|-++..|+.... .+.++..+ +...|...........+
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg------------------~liktYsg-hG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG------------------ALIKTYSG-HGHEVLDAALSSDNSKF 74 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeeccccc------------------ceeeeecC-CCceeeecccccccccc
Confidence 3334556655433 578888889999999985542 34455443 35577777777666666
Q ss_pred eeeeC-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeee-ecCCCceEEEe
Q 001851 91 LSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF-GVPDTVKSMSW 165 (1004)
Q Consensus 91 l~l~d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi-~l~d~~~~l~~ 165 (1004)
..+.+ . +.+|+..+-+..... ...-.++.+.+|++...++-+ ...++.+|.-. .+.|..+.-+ ...|.+.++..
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR-S~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR-SRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc-cCCCCccchhhhhcCceeEEEe
Confidence 66654 3 999998776544322 122346788888887766665 67889888766 4456554433 24688889988
Q ss_pred cCCeEEEEEc-CceEEEEcCCCCccc-ccCCCCCCCC--EEEEccCCeEEE--EeCCeEEEEcC-CCCccc--Ccc--ee
Q 001851 166 CGENICIAIR-KGYMILNATNGALSE-VFPSGRIGPP--LVVSLLSGELLL--GKENIGVFVDQ-NGKLLQ--ADR--IC 234 (1004)
Q Consensus 166 ~~~~i~v~~~-~~y~lidl~~~~~~~-L~~~~~~~~p--~i~~~~~~E~Ll--~~~~~gvfv~~-~G~~~~--~~~--i~ 234 (1004)
.+.-|+-|+. ..|..+|+..|+... -+. .| ++....++.+.| +-|...-.+|. .|+... ++. .+
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e 228 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME 228 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce
Confidence 8888888876 569999999987543 222 33 344456667755 34555555654 555442 111 11
Q ss_pred ecCCCceEEEeCCeEEEEcC-CeeEEEEccCCCceeEEEeeCCcccc-----ccCCCeEEEEeCCeEEEecccC
Q 001851 235 WSEAPIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVRHL-----IPSSNAVVVALENSIFGLFPVP 302 (1004)
Q Consensus 235 w~~~P~~i~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~l~~~~~l-----~~~~~~v~vas~~~i~~l~~~~ 302 (1004)
+.-. -.+.-...++++-++ +.+.++++.+ ..++-.++.++.-.+ .+....+++|+.+.++......
T Consensus 229 ykld-c~l~qsdthV~sgSEDG~Vy~wdLvd-~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 229 YKLD-CCLNQSDTHVFSGSEDGKVYFWDLVD-ETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQEN 300 (307)
T ss_pred eeee-eeecccceeEEeccCCceEEEEEecc-ceeeeeeccCCceeEEeeecccCccceeEecCCceeceeehh
Confidence 1100 011112456666666 5688888864 555555554433211 1344567788887776655443
No 103
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.37 E-value=28 Score=40.92 Aligned_cols=263 Identities=15% Similarity=0.137 Sum_probs=118.6
Q ss_pred CCceeEEEEecccCceeeeeCc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeE--
Q 001851 75 KKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVE-- 150 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~-- 150 (1004)
.-....|..-|....++|+.|| -.+|.-..+.. .... .+..|++.. ++..+|.. .++|.+|+ .|..
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~---k~~G-~g~~~vw~~-~n~yAv~~~~~~I~I~k-----n~~~~~ 101 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN---KAFG-SGLSFVWSS-RNRYAVLESSSTIKIYK-----NFKNEV 101 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE---EEEE-E-SEEEE-T-SSEEEEE-TTS-EEEEE-----TTEE-T
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc---cccC-ceeEEEEec-CccEEEEECCCeEEEEE-----cCcccc
Confidence 3457888999988888887776 66666322221 1122 234566655 67777764 67788875 2322
Q ss_pred eeeeecCCCceEEEecCCeEEEEEcCceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEE-EEeCCeEEEEcCC-----
Q 001851 151 VKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELL-LGKENIGVFVDQN----- 224 (1004)
Q Consensus 151 ~kEi~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~L-l~~~~~gvfv~~~----- 224 (1004)
.+.+.+|..+..|- .|..+++......+++|..++....-+.... -..+.|-++++++ ++..+..++.+.+
T Consensus 102 ~k~i~~~~~~~~If-~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~ 178 (443)
T PF04053_consen 102 VKSIKLPFSVEKIF-GGNLLGVKSSDFICFYDWETGKLIRRIDVSA--VKYVIWSDDGELVALVTKDSIYILKYNLEAVA 178 (443)
T ss_dssp T-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-E---EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHH
T ss_pred ceEEcCCcccceEE-cCcEEEEECCCCEEEEEhhHcceeeEEecCC--CcEEEEECCCCEEEEEeCCeEEEEEecchhcc
Confidence 23455555555553 3777888877779999999997655444321 1246677777664 4444433333322
Q ss_pred -----CCcccCccee-ecCCCceEEEeCCeEEEEcC-CeeEEEEccCCC--ceeEEEeeCCccccc---cCCCeEEEE-e
Q 001851 225 -----GKLLQADRIC-WSEAPIAVIIQKPYAIALLP-RRVEVRSLRVPY--ALIQTIVLQNVRHLI---PSSNAVVVA-L 291 (1004)
Q Consensus 225 -----G~~~~~~~i~-w~~~P~~i~~~~PYll~~~~-~~ieV~~l~~~~--~lvQti~l~~~~~l~---~~~~~v~va-s 291 (1004)
|-.-.-..+. -+....+.+|..- ++..+. +.+.- +.+ + ..+.++ +.+..+. ...+.+|+. -
T Consensus 179 ~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lkY--l~~-Ge~~~i~~l--d~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 179 AIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLKY--LVN-GETGIIAHL--DKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp HBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEEE--EET-TEEEEEEE---SS--EEEEEETTTTEEEEE-T
T ss_pred cccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEEE--EEc-CCcceEEEc--CCceEEEEEEccCCEEEEEEC
Confidence 2110001111 1344455566554 444443 23332 222 2 122222 2222221 123455544 3
Q ss_pred CCeEEEecccChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHH
Q 001851 292 ENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEH 361 (1004)
Q Consensus 292 ~~~i~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~ 361 (1004)
+..|..+..-+-.-+-...+-++.+++++.+.+.. ..+ .+-....+...+.+|-.+|-.+.|++.
T Consensus 253 ~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~----~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 253 DGNVISYELDLSELEFKTAVLRGDFEEVLRMIAAS----NLL-PNIPKDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp T--EEEEE--HHHHHHHHHHHTT-HHH-----HHH----HTG-GG--HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhh----hhc-ccCChhHHHHHHHHHHHCCCHHHHHhh
Confidence 44566554444445555778899999977776421 000 001123466778888899999999876
No 104
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.32 E-value=7.7 Score=40.65 Aligned_cols=222 Identities=13% Similarity=0.156 Sum_probs=126.7
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
.+|+.++.. ++.|.+|+..- |.+|++..+.+ ..+.++.+ +.+.|+.+-.-....-+.+=+
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np----------------~Pv~t~e~-h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNP----------------NPVATFEG-HTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred cceeeEEEcCCcchhhhccCCe-eEEEEccCCCC----------------CceeEEec-cCCceEEEEEeecCeEEEecC
Confidence 456655444 34566665554 88999876432 12234443 356788887776767777777
Q ss_pred C-c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeee-eecCC-CceEE--EecC
Q 001851 95 E-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD-FGVPD-TVKSM--SWCG 167 (1004)
Q Consensus 95 d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kE-i~l~d-~~~~l--~~~~ 167 (1004)
| | +++|+|..+.-.......-.+++++++++.+.|+++ ..+.|.++.+..+ .+.. | ++-++ .++++ .|.|
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~--~liPe~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH--ELIPEDDTSIQSLTVMPDG 179 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc--ccCCCCCcceeeEEEcCCC
Confidence 6 6 999999775432233444678899999999999998 5678888888743 2321 2 22222 34554 4557
Q ss_pred CeEEEEEcCc-eEEEEcCCCC-cccccCCCCCC--CCEEE--E-ccCCeEEE-E-eCCeEEEEcCCCC----cccC--cc
Q 001851 168 ENICIAIRKG-YMILNATNGA-LSEVFPSGRIG--PPLVV--S-LLSGELLL-G-KENIGVFVDQNGK----LLQA--DR 232 (1004)
Q Consensus 168 ~~i~v~~~~~-y~lidl~~~~-~~~L~~~~~~~--~p~i~--~-~~~~E~Ll-~-~~~~gvfv~~~G~----~~~~--~~ 232 (1004)
.++..++.++ -++-++-+++ ..++.|..+.. ...++ . .+++.+|. | .|...-+-+.+|. ..-. ..
T Consensus 180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r 259 (311)
T KOG0315|consen 180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR 259 (311)
T ss_pred cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence 7888887765 4455776664 44555544321 11222 2 35667765 3 3333334454443 1101 12
Q ss_pred eeecCCCceEEEeCCeEEEEcCC-eeEEEEc
Q 001851 233 ICWSEAPIAVIIQKPYAIALLPR-RVEVRSL 262 (1004)
Q Consensus 233 i~w~~~P~~i~~~~PYll~~~~~-~ieV~~l 262 (1004)
..|.- .+....-||+.-.++ ...+.++
T Consensus 260 WvWdc---~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 260 WVWDC---AFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred eEEee---eeccCccEEEecCCCCceeeccc
Confidence 44531 233456788887774 3334444
No 105
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.22 E-value=3.5 Score=42.66 Aligned_cols=82 Identities=16% Similarity=0.299 Sum_probs=62.8
Q ss_pred CcccccccccCCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEE
Q 001851 4 NAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEV 83 (1004)
Q Consensus 4 ~~f~~~~l~~~~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~ 83 (1004)
+-|++.+++....-.|.+|+..++-++-|+.||++..|++....-. . ..+ ..||+.+..
T Consensus 133 ~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~------------------s--Dy~-g~pit~vs~ 191 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS------------------S--DYF-GHPITSVSF 191 (307)
T ss_pred CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceee------------------h--hhc-CCcceeEEe
Confidence 3467788888888999999999999999999999999998764311 0 112 569999999
Q ss_pred ecccCceeeee-Cc-eEEEeCCCCc
Q 001851 84 LASRQLLLSLS-ES-IAFHRLPNLE 106 (1004)
Q Consensus 84 l~~~~~ll~l~-d~-v~~~~L~~l~ 106 (1004)
.+..+..|+=+ |+ +.+.+=.+-+
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhH
Confidence 99998877654 44 7776644433
No 106
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=92.20 E-value=27 Score=40.46 Aligned_cols=222 Identities=13% Similarity=0.118 Sum_probs=137.7
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc
Q 001851 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES 96 (1004)
Q Consensus 18 ~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~ 96 (1004)
++-|+-+ .++|..=.-+|+|-.|+....+. .+.+. -+.|+|+.+.+.++...++.-+ ||
T Consensus 283 qvG~lWq-kd~lItVSl~G~in~ln~~d~~~------------------~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 283 QVGCLWQ-KDHLITVSLSGTINYLNPSDPSV------------------LKVIS-GHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EEEEEEe-CCeEEEEEcCcEEEEecccCCCh------------------hheec-ccccceeEEEEcCCCCEEEeeccCc
Confidence 4556655 67888888899988887665331 11222 3578999999999987777765 57
Q ss_pred -eEEEeCCCCccc--ccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCC--eEE
Q 001851 97 -IAFHRLPNLETI--AVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE--NIC 171 (1004)
Q Consensus 97 -v~~~~L~~l~~~--~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~--~i~ 171 (1004)
|.-|++.+-..- ..-.....++.++..+....+.++-...|.+..+.++ .+....-+.++..|++++-..+ .++
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~-~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDN-GYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccC-cccccceeecCCCceeEEEcCCCCEEE
Confidence 888887553211 1112234455566655555666777888888777632 3433223678889999988754 888
Q ss_pred EEEcCceEEEEcCCCC-cccccCCCCCCCCEEEEccCCeEEEE-eCCeEEEEcCCCCcccC--cceeecCCCceEEEeC-
Q 001851 172 IAIRKGYMILNATNGA-LSEVFPSGRIGPPLVVSLLSGELLLG-KENIGVFVDQNGKLLQA--DRICWSEAPIAVIIQK- 246 (1004)
Q Consensus 172 v~~~~~y~lidl~~~~-~~~L~~~~~~~~p~i~~~~~~E~Ll~-~~~~gvfv~~~G~~~~~--~~i~w~~~P~~i~~~~- 246 (1004)
+++.++..++.-.++- ..+ .+-.....+......|+.++ .|.-.-.+...|.-... -.+.-.+.+..++|..
T Consensus 422 v~~~~~iv~l~~~~~~~~~~---~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIP---IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EEecCcEEEEecCCcceeec---cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC
Confidence 9999998888755542 222 12111122333455678775 45444556666643211 2345556677777753
Q ss_pred -CeEEEEcC-CeeEEEEcc
Q 001851 247 -PYAIALLP-RRVEVRSLR 263 (1004)
Q Consensus 247 -PYll~~~~-~~ieV~~l~ 263 (1004)
-|+.+-.- +.+.++++.
T Consensus 499 ~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred CcEEEEeccCCcEEEEEcc
Confidence 57766554 678888885
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.13 E-value=14 Score=42.24 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=101.5
Q ss_pred ccCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCc
Q 001851 12 ISNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL 89 (1004)
Q Consensus 12 ~~~~~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ 89 (1004)
+.+|.-.+.+++.. |..|..|...|.+.+|+... -...++.. -+..||..+..-|..+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~------------------r~iLR~~~-ah~apv~~~~f~~~d~t 124 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS------------------RVILRQLY-AHQAPVHVTKFSPQDNT 124 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc------------------HHHHHHHh-hccCceeEEEecccCCe
Confidence 44566677777776 77889999999999998331 01122222 24668888888888887
Q ss_pred eeeee-C-c-eEEEeCCCCcccccccCC-CCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEeeeeecCCCceEE
Q 001851 90 LLSLS-E-S-IAFHRLPNLETIAVLTKA-KGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (1004)
Q Consensus 90 ll~l~-d-~-v~~~~L~~l~~~~~i~~~-kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l 163 (1004)
+++-+ | . +.+|++++-.....+... -=+.+-++.+..+.|+|. =..+|.+|..... . ..+.|++-..++-++
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-~-~~v~elnhg~pVe~v 202 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-T-SRVVELNHGCPVESV 202 (487)
T ss_pred EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-C-ceeEEecCCCceeeE
Confidence 76665 4 3 889998763322122111 123344445555667775 3678999987632 1 355678877888888
Q ss_pred EecC--CeEEEEEcCceEEEEcCCCC
Q 001851 164 SWCG--ENICIAIRKGYMILNATNGA 187 (1004)
Q Consensus 164 ~~~~--~~i~v~~~~~y~lidl~~~~ 187 (1004)
.+.+ ..|.-|..+.+.+.|+.+|.
T Consensus 203 l~lpsgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 203 LALPSGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred EEcCCCCEEEEcCCCeEEEEEecCCc
Confidence 8874 45666666899999999763
No 108
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.08 E-value=13 Score=43.07 Aligned_cols=132 Identities=24% Similarity=0.364 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEec-----ccCceeeeeCc-eEEE
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-----SRQLLLSLSES-IAFH 100 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~-----~~~~ll~l~d~-v~~~ 100 (1004)
+.|+||+-+|.|.+|........ .....++.+ + +.||-||..=+ +.+.|.||.-. +.+|
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~-----------~~~lllE~~---l-~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY 102 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQ-----------PEDLLLETQ---L-KDPILQVECGKFVSGSEDLQLAVLHPRKLSVY 102 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCC-----------CccEEEEEe---c-CCcEEEEEeccccCCCCcceEEEecCCEEEEE
Confidence 48999999999999987443221 112223322 2 56899888754 33566777774 7888
Q ss_pred eCCC------------CcccccccCCCCcEEEEecC----C-CcEEEEE-ECCeEEEEEecCCCceeE-eeeeecCCCce
Q 001851 101 RLPN------------LETIAVLTKAKGANVYSWDD----R-RGFLCFA-RQKRVCIFRHDGGRGFVE-VKDFGVPDTVK 161 (1004)
Q Consensus 101 ~L~~------------l~~~~~i~~~kg~~~f~~~~----~-~~~l~V~-~kkki~l~~~~~~~~f~~-~kEi~l~d~~~ 161 (1004)
.+.. ++.+......+.+--||+.+ . +..|||- ..+++.+|+... -.|.. +-.+.+|+++.
T Consensus 103 ~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-~~f~~~lp~~llPgPl~ 181 (418)
T PF14727_consen 103 SVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-FAFSRFLPDFLLPGPLC 181 (418)
T ss_pred EEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-EEEEEEcCCCCCCcCeE
Confidence 7621 12222222233333444432 1 3568885 789999999652 12322 22366676654
Q ss_pred EEEecCCeEEEEEc
Q 001851 162 SMSWCGENICIAIR 175 (1004)
Q Consensus 162 ~l~~~~~~i~v~~~ 175 (1004)
-+.- -|.+++++.
T Consensus 182 Y~~~-tDsfvt~ss 194 (418)
T PF14727_consen 182 YCPR-TDSFVTASS 194 (418)
T ss_pred Eeec-CCEEEEecC
Confidence 3332 244444443
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.99 E-value=5.1 Score=44.76 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=90.3
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
.+.|++++.- +.++...|+||.+.+|++... .+..++.+ +..+|+..........++..
T Consensus 219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~------------------r~~~TLsG-HtdkVt~ak~~~~~~~vVsg 279 (459)
T KOG0288|consen 219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL------------------RLRHTLSG-HTDKVTAAKFKLSHSRVVSG 279 (459)
T ss_pred CCCcceeeecCCCceEEeecCCCceeeeeccch------------------hhhhhhcc-cccceeeehhhccccceeec
Confidence 3458876655 568999999999999998752 22223344 56678887777665554444
Q ss_pred e-C-ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEE-E-ECCeEEEEEecCCCceeEeeeeecCCCceEEEec--C
Q 001851 94 S-E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCF-A-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--G 167 (1004)
Q Consensus 94 ~-d-~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V-~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~ 167 (1004)
+ | .++.|+|..-.-..++-..-.|+.++++ ...++ + ..+||.+|....+ ..++++++.+.++++... |
T Consensus 280 s~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~---~~~~sv~~gg~vtSl~ls~~g 353 (459)
T KOG0288|consen 280 SADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSA---DKTRSVPLGGRVTSLDLSMDG 353 (459)
T ss_pred cccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCC---ceeeEeecCcceeeEeeccCC
Confidence 3 2 2888887542111112122233333333 22222 2 4678888876532 356788888888887654 4
Q ss_pred CeEEEEEc-CceEEEEcCCCCcccccC
Q 001851 168 ENICIAIR-KGYMILNATNGALSEVFP 193 (1004)
Q Consensus 168 ~~i~v~~~-~~y~lidl~~~~~~~L~~ 193 (1004)
..|....+ .-..++|+.+.++...+.
T Consensus 354 ~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred eEEeeecCCCceeeeecccccEEEEee
Confidence 45544444 456777777766554443
No 110
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.95 E-value=7.3 Score=45.63 Aligned_cols=131 Identities=17% Similarity=0.263 Sum_probs=73.3
Q ss_pred eeEEEEecccCceeeeeCc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCC-----------
Q 001851 78 ILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGG----------- 145 (1004)
Q Consensus 78 I~qI~~l~~~~~ll~l~d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~----------- 145 (1004)
+++|-- +.+|++-+++ |.+|+..+.+.+..+.- .++..+.++++...++++++..+.+++....
T Consensus 111 ~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e 186 (443)
T PF04053_consen 111 VEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVE 186 (443)
T ss_dssp EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-G
T ss_pred cceEEc---CcEEEEECCCCEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCch
Confidence 444443 5666666666 99999988777776643 3478888998888899999999999987521
Q ss_pred CceeEeeeeecCCCceEEEecCCeEEEEEcCceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEe-C--CeEEEEc
Q 001851 146 RGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGK-E--NIGVFVD 222 (1004)
Q Consensus 146 ~~f~~~kEi~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~-~--~~gvfv~ 222 (1004)
..|..+.|+ .+.|++.+|.++.+++.+.+ -.-+ +.+|.. ..+..++..-+|+++ + +..+++|
T Consensus 187 ~~f~~~~E~--~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~-----------~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 187 DAFELIHEI--SERIKSGCWVEDCFIYTTSN-HLKY-LVNGET-----------GIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp GGEEEEEEE---S--SEEEEETTEEEEE-TT-EEEE-EETTEE-----------EEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred hceEEEEEe--cceeEEEEEEcCEEEEEcCC-eEEE-EEcCCc-----------ceEEEcCCceEEEEEEccCCEEEEEE
Confidence 146666665 67899999999966666665 2222 444432 234444444556653 2 5666778
Q ss_pred CCCCc
Q 001851 223 QNGKL 227 (1004)
Q Consensus 223 ~~G~~ 227 (1004)
.++.+
T Consensus 252 r~~~v 256 (443)
T PF04053_consen 252 RDGNV 256 (443)
T ss_dssp TT--E
T ss_pred CCCCE
Confidence 77764
No 111
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.81 E-value=5.7 Score=47.63 Aligned_cols=153 Identities=17% Similarity=0.204 Sum_probs=93.9
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eE
Q 001851 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IA 98 (1004)
Q Consensus 21 ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~ 98 (1004)
|+..+++++++|+.+|.|.+|++-.... +-+.+ .+..+|=.|.+.|...-+++-+ |. |.
T Consensus 419 ~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l------------------~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTKNGELQVFDLASASL------------------VETIR-AHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred EecCCCceEEEeccCCceEEEEeehhhh------------------hhhhh-ccccceeeeeecCCCCceEEecCCcEEE
Confidence 5667788999999999999999764322 11112 3466899999999887776665 54 88
Q ss_pred EEeCC---C----------CcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEE
Q 001851 99 FHRLP---N----------LETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMS 164 (1004)
Q Consensus 99 ~~~L~---~----------l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~ 164 (1004)
+|+.. + ++...++.-...+.++.++++...+||+ ...++-+|..+.-..|..+.--.+ |+.+|.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL--PV~smD 557 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL--PVLSMD 557 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc--ceeEEe
Confidence 88741 1 0000123334466777788887889998 788999999884323333333233 566666
Q ss_pred ec-CCeEEEEEc--CceEEEEcCCCCc-ccccCC
Q 001851 165 WC-GENICIAIR--KGYMILNATNGAL-SEVFPS 194 (1004)
Q Consensus 165 ~~-~~~i~v~~~--~~y~lidl~~~~~-~~L~~~ 194 (1004)
.. +..+|+... +...+-=++-|.. ..+|..
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence 55 334555443 4455444444542 334443
No 112
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=91.79 E-value=1.9 Score=46.12 Aligned_cols=178 Identities=18% Similarity=0.257 Sum_probs=100.5
Q ss_pred CcEEEEEEeCC--EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYGL--KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~~--~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..|-|++...+ -|.-|..||.|.+|.+..+ .+.|.|...+.+.|+.+.......-++.-+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG------------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s 325 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETG------------------QCLRRFDRAHTKGVTCLSFSRDNSQILSAS 325 (508)
T ss_pred cceEEEeecccHHHhhccCcCCcEEEEEEecc------------------hHHHHhhhhhccCeeEEEEccCcchhhccc
Confidence 36788888764 6899999999999998742 233444444577899999888876666554
Q ss_pred -Cc-eEEEeCCCCcccccccCCCCcEEEEe-----cCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEec-
Q 001851 95 -ES-IAFHRLPNLETIAVLTKAKGANVYSW-----DDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC- 166 (1004)
Q Consensus 95 -d~-v~~~~L~~l~~~~~i~~~kg~~~f~~-----~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~- 166 (1004)
|. +.+|.|.+-+. +...+|-+.|.- ++....|-..+...+.+|..+.++-....|-....-++.++...
T Consensus 326 fD~tvRiHGlKSGK~---LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P 402 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKC---LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP 402 (508)
T ss_pred ccceEEEeccccchh---HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcC
Confidence 44 88888755432 334566555422 22223344457788888876533221111211111122333322
Q ss_pred --CCeEEEEEc-CceEEEEcCCCCcccccCCCCC-CCCEEE--EccCCeEEEEeCC
Q 001851 167 --GENICIAIR-KGYMILNATNGALSEVFPSGRI-GPPLVV--SLLSGELLLGKEN 216 (1004)
Q Consensus 167 --~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~-~~p~i~--~~~~~E~Ll~~~~ 216 (1004)
...++|.++ +..+++|+ .|++..-|..|+- +-..|. -.+.+|++.|.+.
T Consensus 403 Knpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 403 KNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred CCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 124455665 44556666 4566666666542 222222 2356677766543
No 113
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=0.76 Score=57.12 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=115.5
Q ss_pred EEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccC-ceeeeeC-c-eEEEeCCCC
Q 001851 29 ILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ-LLLSLSE-S-IAFHRLPNL 105 (1004)
Q Consensus 29 L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~-~ll~l~d-~-v~~~~L~~l 105 (1004)
|.=|++||.|..|+....... ....++.+. .-+..+|.-|.+-+... +|..-++ | |.+|+|..+
T Consensus 83 IaGG~edG~I~ly~p~~~~~~------------~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIAN------------ASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP 149 (1049)
T ss_pred eeccccCCceEEecchhhccC------------cchHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence 788999999999997653111 111222222 23466888888887665 5554444 5 999999887
Q ss_pred cccccc---cCCCCcEEEEecCCCcE-EEEE-ECCeEEEEEecCCCceeEeeeeecCCC-----ceEEEecC---CeEEE
Q 001851 106 ETIAVL---TKAKGANVYSWDDRRGF-LCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDT-----VKSMSWCG---ENICI 172 (1004)
Q Consensus 106 ~~~~~i---~~~kg~~~f~~~~~~~~-l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~-----~~~l~~~~---~~i~v 172 (1004)
+...+. ...-.++++++|..-.. +|-+ ...+..|+.++..+.. |.+.+. +..++|.- ..|.+
T Consensus 150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-----i~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-----IKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-----cccccCCCccceeeeeeCCCCceeeee
Confidence 654332 23346677888765443 4444 4457777777633222 233333 34789983 47888
Q ss_pred EEcC-ceEEE---EcCCCC-cccccCCCCCCCCEEEEc-cCCeEEE--EeCCeEEEEcC-CCCcccC--------cceee
Q 001851 173 AIRK-GYMIL---NATNGA-LSEVFPSGRIGPPLVVSL-LSGELLL--GKENIGVFVDQ-NGKLLQA--------DRICW 235 (1004)
Q Consensus 173 ~~~~-~y~li---dl~~~~-~~~L~~~~~~~~p~i~~~-~~~E~Ll--~~~~~gvfv~~-~G~~~~~--------~~i~w 235 (1004)
++.. .--+| |+.... ...++.....+--.+-|. .+.++|+ +.|+..++-|. .|+.+.. ..++|
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee
Confidence 8763 33333 443321 222222111111112223 3447776 36666676664 3333211 12333
Q ss_pred cCCCceEEEeCCeEEEEc--CCeeEEEEccC
Q 001851 236 SEAPIAVIIQKPYAIALL--PRRVEVRSLRV 264 (1004)
Q Consensus 236 ~~~P~~i~~~~PYll~~~--~~~ieV~~l~~ 264 (1004)
.. ..|-+++.. ++.|+|+++..
T Consensus 305 ~p-------r~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 305 CP-------RNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cC-------CCcchhhhheeccceeeeeeec
Confidence 21 246666655 48899999974
No 114
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.66 E-value=13 Score=40.26 Aligned_cols=137 Identities=11% Similarity=0.125 Sum_probs=75.9
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc---------e
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES---------I 97 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~---------v 97 (1004)
.-..|||++| ..+|+++.-.... .+++.. ..-.|..| +-..|+|..+.++ |
T Consensus 18 ScFava~~~G-friyn~~P~ke~~----------------~r~~~~-~G~~~veM--LfR~N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 18 SCFAVATDTG-FRIYNCDPFKESA----------------SRQFID-GGFKIVEM--LFRSNYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred ceEEEEecCc-eEEEecCchhhhh----------------hhcccc-CchhhhhH--hhhhceEEEecCCCCCCCCCceE
Confidence 4789999999 6888877422110 011110 01122222 2245777777652 6
Q ss_pred EEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEec---CCeEEEEE
Q 001851 98 AFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC---GENICIAI 174 (1004)
Q Consensus 98 ~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~---~~~i~v~~ 174 (1004)
.+|+=..-..+..+.....+..+++ ++.+|+|+.+.+|.+|.+.++ .+.++.+..-..|..++-. -+.-++++
T Consensus 78 iIWDD~k~~~i~el~f~~~I~~V~l--~r~riVvvl~~~I~VytF~~n--~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 78 IIWDDLKERCIIELSFNSEIKAVKL--RRDRIVVVLENKIYVYTFPDN--PKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EEEecccCcEEEEEEeccceeeEEE--cCCeEEEEecCeEEEEEcCCC--hhheeeeecccCCCceEeecCCCCceEEEc
Confidence 6676211123334444555555555 457899999999999999843 4556666555556655433 23333332
Q ss_pred ---c-CceEEEEcCCCC
Q 001851 175 ---R-KGYMILNATNGA 187 (1004)
Q Consensus 175 ---~-~~y~lidl~~~~ 187 (1004)
+ .+..++|+....
T Consensus 154 Pg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTK 170 (346)
T ss_pred CCCccceEEEEEhhhcC
Confidence 2 356777776543
No 115
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.53 E-value=30 Score=41.75 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=130.5
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC
Q 001851 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (1004)
Q Consensus 16 ~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d 95 (1004)
|.-+..++..+.-|..|.-||.+.+|++..+ |. ...++++ +..|..+..=|..+..+..++
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-----------------~~-th~fkG~-gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKNG-----------------YC-THSFKGH-GGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeCC-----------------EE-EEEecCC-CceEEEEEeCCccchhheeec
Confidence 4445567777788999999999999998763 22 2344543 567888887777666444443
Q ss_pred ---c-eEEEeCCCCcc-cccc-cCCCCcEEEEecCCCc-EEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCC
Q 001851 96 ---S-IAFHRLPNLET-IAVL-TKAKGANVYSWDDRRG-FLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE 168 (1004)
Q Consensus 96 ---~-v~~~~L~~l~~-~~~i-~~~kg~~~f~~~~~~~-~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~ 168 (1004)
+ +.+|++.+-.+ +... ...-.++..+..++.. .+.++..|-+.+|.+.. .+..+-.++-+.+-++.+..+
T Consensus 168 ~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~---~~~l~~lp~ye~~E~vv~l~~ 244 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ---YKKLKTLPLYESLESVVRLRE 244 (775)
T ss_pred CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh---hhhhheechhhheeeEEEech
Confidence 4 99999875433 2221 1122345555554433 34555556667777642 233344444455555554422
Q ss_pred -------eEE-EEEcCceEEEEcCCCCcccccCC--CCCCCCEEEEccCCeEE-EEeCCeEEEEcC-CCCcccCcceeec
Q 001851 169 -------NIC-IAIRKGYMILNATNGALSEVFPS--GRIGPPLVVSLLSGELL-LGKENIGVFVDQ-NGKLLQADRICWS 236 (1004)
Q Consensus 169 -------~i~-v~~~~~y~lidl~~~~~~~L~~~--~~~~~p~i~~~~~~E~L-l~~~~~gvfv~~-~G~~~~~~~i~w~ 236 (1004)
.++ +|...-+.+.|..++....-... +.....+......+.+| +..+...++|+. +++++ +.-+-++
T Consensus 245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~-k~ivG~n 323 (775)
T KOG0319|consen 245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV-KQIVGYN 323 (775)
T ss_pred hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEe-hhhcCCc
Confidence 443 44445678888887753222111 11011112122334554 455666667764 44554 4566677
Q ss_pred CCCceEEEeC---CeEEEEcC-CeeEEEEccCCCceeEE
Q 001851 237 EAPIAVIIQK---PYAIALLP-RRVEVRSLRVPYALIQT 271 (1004)
Q Consensus 237 ~~P~~i~~~~---PYll~~~~-~~ieV~~l~~~~~lvQt 271 (1004)
+....+.|.. -|+.+.+. ..+-++++. +.-.|-
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~--~~~c~i 360 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLP--TSYCQI 360 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecC--CCceEE
Confidence 7777777776 46666655 678888764 334453
No 116
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=91.48 E-value=0.047 Score=48.58 Aligned_cols=35 Identities=37% Similarity=0.730 Sum_probs=26.1
Q ss_pred CcCCcCCCccCCc-EEEEcCCCCeEEEecccCCchhhh
Q 001851 957 SMCSLCSKKIGTS-VFAVYPNGKTIVHFVCFRDSQSMK 993 (1004)
Q Consensus 957 ~~C~vC~k~l~~~-~f~v~p~~~~v~H~~C~~~~~~~~ 993 (1004)
-+|.+|++++-.. .|-.++.| +||+.|+......+
T Consensus 3 WkC~iCg~~I~~gqlFTF~~kG--~VH~~C~~~~~~~k 38 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKKG--PVHYECFREKASKK 38 (101)
T ss_pred eEEEecCCeeeecceEEEecCC--cEeHHHHHHHHhhh
Confidence 3799999998665 58855554 99999998654443
No 117
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=91.45 E-value=1.2 Score=50.44 Aligned_cols=236 Identities=13% Similarity=0.133 Sum_probs=136.7
Q ss_pred cEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 18 KIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 18 ~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
-|+|+...- ..|+=|+-||.|++|++-.. ..+++++.+ +.+||..+.--.....+++.+
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-----------------~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-----------------RRCLRTFKG-HRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecC-----------------cceehhhhc-chhhhhhhhccccCCeeeeee
Confidence 466665543 45677899999999998752 245666665 477999999888887777776
Q ss_pred -Cc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEE-EE-ECCeEEEEEecCCCceeEeeeeec-CCCceEEEecC-C
Q 001851 95 -ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLC-FA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWCG-E 168 (1004)
Q Consensus 95 -d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~-V~-~kkki~l~~~~~~~~f~~~kEi~l-~d~~~~l~~~~-~ 168 (1004)
|. +++|+..+-.-+......+-.+++...++...++ || .+++|..|....++ + +.|+.- -..+.++.|+. +
T Consensus 278 fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-v--vqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-V--VQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-H--HHHHHhhhhheeeeEEccCC
Confidence 64 9999976655444444445555555555554444 43 78899888877443 2 223211 13556677763 3
Q ss_pred eEEEEEc--CceEEEEcCCCCcccccC-CCCCCCCEEEEccCCeEEEE--eCC-eEEEEcCCCCcc-cC--cceee-cCC
Q 001851 169 NICIAIR--KGYMILNATNGALSEVFP-SGRIGPPLVVSLLSGELLLG--KEN-IGVFVDQNGKLL-QA--DRICW-SEA 238 (1004)
Q Consensus 169 ~i~v~~~--~~y~lidl~~~~~~~L~~-~~~~~~p~i~~~~~~E~Ll~--~~~-~gvfv~~~G~~~-~~--~~i~w-~~~ 238 (1004)
.=++.+. +.+.+-+...+....+.. +....-|++..-+++.++.| .|| +++|-...--+. ++ ..=.| .++
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 3333332 445555655554333221 22223577877788888886 344 344422111111 11 00012 245
Q ss_pred CceEEEe--CCeEEEEcC-CeeEEEEccCCCceeEEEeeC
Q 001851 239 PIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVLQ 275 (1004)
Q Consensus 239 P~~i~~~--~PYll~~~~-~~ieV~~l~~~~~lvQti~l~ 275 (1004)
+..+.|. .-||+.-.. +.+.+++.. +..++-++...
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwk-t~kl~~~lkah 473 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWK-TTKLVSKLKAH 473 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeech-hhhhhhccccC
Confidence 5555553 357776665 678888885 55555555443
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.37 E-value=0.62 Score=38.32 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 306 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+...+++.|+|++|+..++..-..+. .-...+...|..++.+|++++|...|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-----DNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34578999999999999987532111 12356777899999999999999999774
No 119
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.16 E-value=18 Score=40.02 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=70.7
Q ss_pred EEecCCCcEEEEEECCeEEEEEecCCCceeEeeeee-cCCCceEE---EecCC--eEEEEE---cCceEEEEcCCCCccc
Q 001851 120 YSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSM---SWCGE--NICIAI---RKGYMILNATNGALSE 190 (1004)
Q Consensus 120 f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l---~~~~~--~i~v~~---~~~y~lidl~~~~~~~ 190 (1004)
.++.-++.+|+|.....|.+|.+.. .+.+..|. .|..++.+ +...+ .+.+-. ..+..++|+.+-+...
T Consensus 91 L~VrmNr~RLvV~Lee~IyIydI~~---MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLEESIYIYDIKD---MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred EEEEEccceEEEEEcccEEEEeccc---ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 3444566788998888899998884 34444443 34555533 22333 333321 1356667776654433
Q ss_pred ccCCCCCCCCEEEEccCCeEEE-EeCC---eEEEEcCCCCcc---cCcceeecCCCceEEE--eCCeEEEEcC-CeeEEE
Q 001851 191 VFPSGRIGPPLVVSLLSGELLL-GKEN---IGVFVDQNGKLL---QADRICWSEAPIAVII--QKPYAIALLP-RRVEVR 260 (1004)
Q Consensus 191 L~~~~~~~~p~i~~~~~~E~Ll-~~~~---~gvfv~~~G~~~---~~~~i~w~~~P~~i~~--~~PYll~~~~-~~ieV~ 260 (1004)
.+...+..-.++..-++|.+|- +.+. .-||--.+|+.. ||++.. ..--+++| ..+||.+.++ +.|.|+
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~--~~IySL~Fs~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP--VSIYSLSFSPDSQFLAASSNTETVHIF 245 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee--eEEEEEEECCCCCeEEEecCCCeEEEE
Confidence 3332222112222234444443 2332 235556778655 344431 11123333 3577777766 567777
Q ss_pred Ecc
Q 001851 261 SLR 263 (1004)
Q Consensus 261 ~l~ 263 (1004)
.+.
T Consensus 246 KL~ 248 (391)
T KOG2110|consen 246 KLE 248 (391)
T ss_pred Eec
Confidence 764
No 120
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.03 E-value=1.4 Score=52.60 Aligned_cols=108 Identities=18% Similarity=0.241 Sum_probs=78.9
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..+.|+..|. ++++-|++|-++..|++.... .+|.|.+ ++.||+.+.+.|....|..-+
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------------------~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------------------SVRIFTG-HKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCc------------------EEEEecC-CCCceEEEEEcCCCceEeecc
Confidence 5788999996 588999999999999976432 2566665 689999999999776666666
Q ss_pred C-c-eEEEeCCCCcccccccC-CCCcEEEEecCCCcEEEEE-ECCeEEEEEec
Q 001851 95 E-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFA-RQKRVCIFRHD 143 (1004)
Q Consensus 95 d-~-v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~ 143 (1004)
+ + |.+|++++-+.+..+.. +..+..+.++.+.+.|+++ ....|.+|.+.
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 5 5 99999987655544322 2234455666677788887 66778888643
No 121
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.72 E-value=1.6 Score=50.35 Aligned_cols=142 Identities=15% Similarity=0.198 Sum_probs=72.1
Q ss_pred EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceee--eeecCCCCCceeEEEEec--------------------
Q 001851 28 KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELE--RTISGFSKKPILSMEVLA-------------------- 85 (1004)
Q Consensus 28 ~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~k~~I~qI~~l~-------------------- 85 (1004)
.|++||+.|.++.|.+...+. ..|... ... ...+.+|.+|..+.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~-------------g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSN-------------GRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GG-------------G-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEEEeCCCCEEEEEEecCCC-------------CceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 689999999999999864321 123321 111 12356788877773
Q ss_pred --ccCceeeeeC-ceEEEeCCCCcccccccCC-CCcEEEEe----c--CCCcEEEEEECCeEEEEEecCCCceeEeeeee
Q 001851 86 --SRQLLLSLSE-SIAFHRLPNLETIAVLTKA-KGANVYSW----D--DRRGFLCFARQKRVCIFRHDGGRGFVEVKDFG 155 (1004)
Q Consensus 86 --~~~~ll~l~d-~v~~~~L~~l~~~~~i~~~-kg~~~f~~----~--~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~ 155 (1004)
-..+++++++ .+.++.+++-+..++..+. ..|...++ + .....+|+...+++.+|.+- .++.+++..
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP---~Lkei~~~~ 299 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP---SLKEIKSVS 299 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT---T--EEEEEE
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC---CchHhhccc
Confidence 1235667777 4999998876544432211 11221222 1 11234566688999999987 355666666
Q ss_pred cCCC-------ceEEEecCCeEEEEEcCceEEEEcCCC
Q 001851 156 VPDT-------VKSMSWCGENICIAIRKGYMILNATNG 186 (1004)
Q Consensus 156 l~d~-------~~~l~~~~~~i~v~~~~~y~lidl~~~ 186 (1004)
+|.. -.++...|+.+++....+..++.+...
T Consensus 300 l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 300 LPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp -SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred CCCccccccccccEECCCCCEEEEeCcccEEEEEEEcc
Confidence 5421 123455578778888888888776543
No 122
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=90.64 E-value=7.8 Score=44.04 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=93.8
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEec--------
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-------- 85 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~-------- 85 (1004)
.+.|+|+... +..|.-.++||++.+|+....... ..+. .+.+.|..|.-.|
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------------------~~l~-~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------------------HDLQ-AHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcch------------------hhhh-hhccceeeEeecCCCCccCCC
Confidence 3678888877 567888899999999986643221 0111 1233455555444
Q ss_pred ccCc-ee-eeeCc-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCc
Q 001851 86 SRQL-LL-SLSES-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTV 160 (1004)
Q Consensus 86 ~~~~-ll-~l~d~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~ 160 (1004)
..+. ++ +..|+ |.+|+.....++.++ ...-+|..++..++...++-+ ..+.+.++...-+. .+|+..-.+.|
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~---l~~s~~~~~~I 496 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK---LVKSYQGTGGI 496 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh---eeEeecCCCeE
Confidence 2232 22 23465 999998777777665 334466777777777778877 45666677665333 34555556667
Q ss_pred eEEEec--CCeEEEEEc-CceEEEEcC
Q 001851 161 KSMSWC--GENICIAIR-KGYMILNAT 184 (1004)
Q Consensus 161 ~~l~~~--~~~i~v~~~-~~y~lidl~ 184 (1004)
-.++|. |+.|++... ...+++|+.
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 889997 788888876 456777763
No 123
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=7.5 Score=45.48 Aligned_cols=188 Identities=11% Similarity=0.132 Sum_probs=117.5
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-
Q 001851 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS- 94 (1004)
Q Consensus 16 ~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~- 94 (1004)
..+|.|++.-+..+-.|+.+|.|+++++..... .++ ....+...|--++.-+..+.+..=.
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~-----------------~~~-~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH-----------------VVS-TLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecchh-----------------hhh-hhhcccceeeeeEECCCCCeeccCCC
Confidence 457889988889999999999999999875332 111 1224577888999998877776543
Q ss_pred Cc-eEEEeCCCCcccccccCCC-CcEEEEecCCC-cEEEEEEC---CeEEEEEecCCCceeEeeeeecCCCceEEEecCC
Q 001851 95 ES-IAFHRLPNLETIAVLTKAK-GANVYSWDDRR-GFLCFARQ---KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE 168 (1004)
Q Consensus 95 d~-v~~~~L~~l~~~~~i~~~k-g~~~f~~~~~~-~~l~V~~k---kki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~ 168 (1004)
|+ +.+|+..+.+++..+..-+ -|.++++++-. +.||+|.. +.|.++-...+ ..+..+.....|++|.|...
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vdtgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVDTGSQVCSLIWSKK 398 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccccCCceeeEEEcCC
Confidence 44 9999986666665544433 45678888754 77888733 34444443322 35566777889999999854
Q ss_pred --eEEEEEc---CceEEEEcCCCCcccccCCCCCCCCE-EEEccCCeEEE--EeCCeEEEEcCCC
Q 001851 169 --NICIAIR---KGYMILNATNGALSEVFPSGRIGPPL-VVSLLSGELLL--GKENIGVFVDQNG 225 (1004)
Q Consensus 169 --~i~v~~~---~~y~lidl~~~~~~~L~~~~~~~~p~-i~~~~~~E~Ll--~~~~~gvfv~~~G 225 (1004)
-||.+.. ++..|.+..+-.....+.... .+-+ ...-++++.++ +.|+..=|.+..+
T Consensus 399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~-~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 399 YKELLSTHGYSENQITLWKYPSMKLVAELLGHT-SRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCEEEEecCCCCCcEEEEeccccceeeeecCCc-ceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 4776644 445666665532222222111 1222 22235666654 3455666666554
No 124
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=90.59 E-value=41 Score=44.98 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.++..|++++|+..++.....+. .-..++...|..++.+|+|++|..+|.++
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P-----~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP-----KDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567777777777655311000 11234455577777777777777777663
No 125
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=90.44 E-value=15 Score=42.05 Aligned_cols=183 Identities=14% Similarity=0.111 Sum_probs=103.6
Q ss_pred Cceee-eeC-c-eEEEeCCCCcccccccCCCCcEE-EEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeecCCCceE
Q 001851 88 QLLLS-LSE-S-IAFHRLPNLETIAVLTKAKGANV-YSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPDTVKS 162 (1004)
Q Consensus 88 ~~ll~-l~d-~-v~~~~L~~l~~~~~i~~~kg~~~-f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l~d~~~~ 162 (1004)
++++| ..+ + |.+.+..+.+.+..++...+++. .+..++...+.|+. ...|.++.... .+.++++.....+.+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT---GKVVATIKVGGNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS---SSEEEEEE-SSEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc---ccEEEEEecCCCcce
Confidence 55544 344 3 99999888887777765555544 34455555677764 45677777653 346778888888999
Q ss_pred EEec--CCeEEEEEc--CceEEEEcCCCCcccccCCC------CCCCCE--EEEccCCeEEEEeC--CeEEEEcCC-CCc
Q 001851 163 MSWC--GENICIAIR--KGYMILNATNGALSEVFPSG------RIGPPL--VVSLLSGELLLGKE--NIGVFVDQN-GKL 227 (1004)
Q Consensus 163 l~~~--~~~i~v~~~--~~y~lidl~~~~~~~L~~~~------~~~~p~--i~~~~~~E~Ll~~~--~~gvfv~~~-G~~ 227 (1004)
+++. |..+++++. ..+.++|..+.+...-.+.+ ...++. +..-...+|+++.. +....+|.. ..+
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 8885 678988874 78999999998765444432 112222 22235567887643 334455643 232
Q ss_pred ccCcceeecCCCceEEEeCC--eEEE-Ec-CCeeEEEEccCCCceeEEEee
Q 001851 228 LQADRICWSEAPIAVIIQKP--YAIA-LL-PRRVEVRSLRVPYALIQTIVL 274 (1004)
Q Consensus 228 ~~~~~i~w~~~P~~i~~~~P--Yll~-~~-~~~ieV~~l~~~~~lvQti~l 274 (1004)
.....+.=...|....+... |+++ .. ++.|-|.+.. ++.++..+..
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~-~~k~v~~i~~ 212 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK-TGKLVALIDT 212 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT-TTEEEEEEE-
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeec-cceEEEEeec
Confidence 22234444557777777643 5544 33 4788888886 4666666554
No 126
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.21 E-value=4.5 Score=45.15 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=86.6
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-C-ceE
Q 001851 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-E-SIA 98 (1004)
Q Consensus 21 ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d-~v~ 98 (1004)
.|++.+..++=|-.|+.|..|++.... +.++... ...|+.+.+.....-+++.+ | .+.
T Consensus 307 DI~~~~~~~~SgH~DkkvRfwD~Rs~~------------------~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 307 DIVCSISDVISGHFDKKVRFWDIRSAD------------------KTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred ceEecceeeeecccccceEEEeccCCc------------------eeeEeec--CcceeeEeeccCCeEEeeecCCCcee
Confidence 344446667778889999999876432 1222221 34899999999988888776 3 499
Q ss_pred EEeCCCCccccc--ccCCC---CcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecC--CeE
Q 001851 99 FHRLPNLETIAV--LTKAK---GANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG--ENI 170 (1004)
Q Consensus 99 ~~~L~~l~~~~~--i~~~k---g~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~--~~i 170 (1004)
++++.+++-... -...| ..+..+++++...++.| ..+.|.||....++.=...+.-.-+..+.+++|.+ ..+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 999988753321 12222 34556777777777776 78889898887553111223222233688999984 444
Q ss_pred EEEEcCceE
Q 001851 171 CIAIRKGYM 179 (1004)
Q Consensus 171 ~v~~~~~y~ 179 (1004)
.-+.+..|+
T Consensus 447 lsadk~~~v 455 (459)
T KOG0288|consen 447 LSADKQKAV 455 (459)
T ss_pred hcccCCcce
Confidence 444444443
No 127
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.20 E-value=1.4 Score=51.03 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=67.1
Q ss_pred cEEEEEEeCC--EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc--Cceeee
Q 001851 18 KIDAVASYGL--KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR--QLLLSL 93 (1004)
Q Consensus 18 ~I~ci~~~~~--~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~--~~ll~l 93 (1004)
.|+++...++ ++.|||++|.+++|++....+ .+++.+ -..-||..|.-.+.. +.++ -
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p----------------l~~kdh--~~e~pi~~l~~~~~~~q~~v~-S 290 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP----------------LLVKDH--GYELPIKKLDWQDTDQQNKVV-S 290 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEcccCCc----------------eeeccc--CCccceeeecccccCCCceEE-e
Confidence 4888877764 899999999999999885432 222221 124477777776652 3333 3
Q ss_pred eC-c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE
Q 001851 94 SE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA 132 (1004)
Q Consensus 94 ~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~ 132 (1004)
+| . +.+|+=.+-++...++.+.+++.||.=++.|.++.|
T Consensus 291 ~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 291 MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred cchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 45 3 888886666777778888888889888888866665
No 128
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.17 E-value=0.057 Score=46.65 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=28.2
Q ss_pred CCcCCcCCCccCC-cEEEEcCCCCeEEEecccCCchhhhh
Q 001851 956 DSMCSLCSKKIGT-SVFAVYPNGKTIVHFVCFRDSQSMKA 994 (1004)
Q Consensus 956 ~~~C~vC~k~l~~-~~f~v~p~~~~v~H~~C~~~~~~~~~ 994 (1004)
+-+|.||++++-. ..|..+|.| .|||.|+......+|
T Consensus 6 ewkC~VCg~~iieGqkFTF~~kG--sVH~eCl~~s~~~k~ 43 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTKKG--SVHYECLAESKRKKP 43 (103)
T ss_pred eeeEeeeCCEeeeccEEEEeeCC--cchHHHHHHHHhcCc
Confidence 4589999999765 568877876 899999976544444
No 129
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.17 E-value=4.2 Score=45.34 Aligned_cols=158 Identities=9% Similarity=0.149 Sum_probs=94.0
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..++|.+.+ |.+++.|..|+.++.|+++++... .|+-+ ...+|..|.+-+....+++.+
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~-------------~W~gv------r~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG-------------NWEGV------RDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhh-------------ccccc------ccceeEEEEEcCCCcEEEEEe
Confidence 355565555 468999999999999999986532 34322 235788899888887666554
Q ss_pred -Cc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecC-C--
Q 001851 95 -ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG-E-- 168 (1004)
Q Consensus 95 -d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~-~-- 168 (1004)
|. +.+|+..+..-...++.-.+++.|+++.+.....|- ....+.++.+.+.+...+........-+..-+|-| +
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 54 888886554333345667889999998765443333 67788888776332111111000111112223433 3
Q ss_pred eEEEEEc-CceEEEEcCCCCcccccC
Q 001851 169 NICIAIR-KGYMILNATNGALSEVFP 193 (1004)
Q Consensus 169 ~i~v~~~-~~y~lidl~~~~~~~L~~ 193 (1004)
.|.=|+. ...+|-+..+|.....++
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeec
Confidence 3333333 456777777776555544
No 130
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=8.4 Score=45.08 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
...|+|+... |++|.|||.+|.+.+|+....... +... . .....+-.+.-....++.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~------------------~~~~-~--~h~~rvg~laW~~~~lss 275 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT------------------RTLR-G--SHASRVGSLAWNSSVLSS 275 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc------------------cccc-C--CcCceeEEEeccCceEEE
Confidence 5678888776 689999999999999998764321 1111 1 123344445444444444
Q ss_pred eC--c-eEEEeCCCCccccc-cc-CCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEec-
Q 001851 94 SE--S-IAFHRLPNLETIAV-LT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC- 166 (1004)
Q Consensus 94 ~d--~-v~~~~L~~l~~~~~-i~-~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~- 166 (1004)
.. + +..|++..-+.... +. ...-+.-..++.+...++-+ -..++.||....... ..+-......++.|+|+
T Consensus 276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP 353 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP--KFTFTEHTAAVKALAWCP 353 (484)
T ss_pred ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc--cEEEeccceeeeEeeeCC
Confidence 32 3 88888755433222 10 11122234456665667766 455666776532111 11112234578899998
Q ss_pred --CCeEEEEEc---CceEEEEcCCCCcccccCCCCCCCCEEEEc-cCCeEEEE
Q 001851 167 --GENICIAIR---KGYMILNATNGALSEVFPSGRIGPPLVVSL-LSGELLLG 213 (1004)
Q Consensus 167 --~~~i~v~~~---~~y~lidl~~~~~~~L~~~~~~~~p~i~~~-~~~E~Ll~ 213 (1004)
.+.|..|-. +-..+.|..+|.......++.. --.+.|. ..+|++.+
T Consensus 354 ~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ-VcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 354 WQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ-VCSLIWSKKYKELLST 405 (484)
T ss_pred CccCceEEcCCCcccEEEEEEcCCCcEecccccCCc-eeeEEEcCCCCEEEEe
Confidence 467777754 2355567888765554444321 1112333 34577654
No 131
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=90.11 E-value=2.8 Score=45.62 Aligned_cols=140 Identities=11% Similarity=0.244 Sum_probs=82.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecc---cCceeeeeCc-eEEEe
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS---RQLLLSLSES-IAFHR 101 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~---~~~ll~l~d~-v~~~~ 101 (1004)
+..+.+|.++|.|.+|+..... ..+.++. ....+.++.++.. ..++.+.+|| |.+|+
T Consensus 40 e~~vav~lSngsv~lyd~~tg~------------------~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQ------------------LLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred ceeEEEEecCCeEEEEeccchh------------------hhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 3569999999999999855311 1122222 2446667777763 2344445676 99999
Q ss_pred CCCCccccccc--CCCCcEEEEecC--CCcEEEEEECC-----eEEEEEecCCCceeEeee--eecCCCceEEEecC---
Q 001851 102 LPNLETIAVLT--KAKGANVYSWDD--RRGFLCFARQK-----RVCIFRHDGGRGFVEVKD--FGVPDTVKSMSWCG--- 167 (1004)
Q Consensus 102 L~~l~~~~~i~--~~kg~~~f~~~~--~~~~l~V~~kk-----ki~l~~~~~~~~f~~~kE--i~l~d~~~~l~~~~--- 167 (1004)
+.....++.+. ...|..+.|++. +.+.+|.++.. .+++|.|....+ .++- =+-.|.++++.|..
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCC
Confidence 87765444321 122334445544 44667777332 245555542212 1222 23468899999983
Q ss_pred CeEEEEEcCce-EEEEcCCC
Q 001851 168 ENICIAIRKGY-MILNATNG 186 (1004)
Q Consensus 168 ~~i~v~~~~~y-~lidl~~~ 186 (1004)
+.+.-|+..++ .++|+..-
T Consensus 179 nlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred CeEEeecccceEEeeecCCC
Confidence 57777777665 56777653
No 132
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.06 E-value=16 Score=42.66 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=103.4
Q ss_pred ceeEEEEecccCceeeeeCc---eEEEeCCCCccccc-ccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEe
Q 001851 77 PILSMEVLASRQLLLSLSES---IAFHRLPNLETIAV-LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEV 151 (1004)
Q Consensus 77 ~I~qI~~l~~~~~ll~l~d~---v~~~~L~~l~~~~~-i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~ 151 (1004)
.=+.|.+.|....+++.+-. |.+|++..|..... -...-.+.+.-++++-..+|+- ..|.|-+.- ..|..+
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-k~G~hy--- 128 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-KYGRHY--- 128 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh-hcCeee---
Confidence 55779999999998887763 99999987653211 1223344555556666666655 444453332 223211
Q ss_pred eeeecCCCceEEEec---CCeEEEEEcCceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEe---CCeEEEEcCCC
Q 001851 152 KDFGVPDTVKSMSWC---GENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGK---ENIGVFVDQNG 225 (1004)
Q Consensus 152 kEi~l~d~~~~l~~~---~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~---~~~gvfv~~~G 225 (1004)
.+-+|-.-+.|++. -+..|+|+..+.+-+|+..|....-|.+.... --++.+..-.=|||+ ++..-|.|.--
T Consensus 129 -~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~-lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 -RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE-LNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred -eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccc-ceeeeecCccceEEecccCceEEEecchh
Confidence 23356566667665 36889999999999999999754433332111 112333332225544 34455766432
Q ss_pred CcccCcceeecCC------------CceEEEeC-CeEEEEc--CCeeEEEEcc
Q 001851 226 KLLQADRICWSEA------------PIAVIIQK-PYAIALL--PRRVEVRSLR 263 (1004)
Q Consensus 226 ~~~~~~~i~w~~~------------P~~i~~~~-PYll~~~--~~~ieV~~l~ 263 (1004)
+ ++-+++..... |+++.|.. +-=+|+. .+.+-||++.
T Consensus 207 k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 207 K-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred h-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 2 11123333322 56777766 6555554 4789999986
No 133
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.04 E-value=5.2 Score=41.62 Aligned_cols=136 Identities=14% Similarity=0.212 Sum_probs=84.4
Q ss_pred cEEE--EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC
Q 001851 18 KIDA--VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (1004)
Q Consensus 18 ~I~c--i~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d 95 (1004)
.|++ ++..++.|+....||.+|.++++... +.+.+++.+. -|-.+..=....-+++=++
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~------------------i~r~~rGHtD-YvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGR------------------IQREYRGHTD-YVHSVVGRNANGQILSGAE 176 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCE------------------EEEEEcCCcc-eeeeeeecccCcceeecCC
Confidence 4665 44456778777799999999988532 2344444322 2333322222333444444
Q ss_pred -c-eEEEeCCCCcccccccCCCCcEE---------EEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEE
Q 001851 96 -S-IAFHRLPNLETIAVLTKAKGANV---------YSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMS 164 (1004)
Q Consensus 96 -~-v~~~~L~~l~~~~~i~~~kg~~~---------f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~ 164 (1004)
| +.+|+..+-+-+..++..|+-++ -|++.+..-++.+..+++.||.+.... .+.-|++|..++-+.
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse---~t~vfpipa~v~~v~ 253 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSE---STCVFPIPARVHLVD 253 (325)
T ss_pred CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCC---ceEEEecccceeEee
Confidence 5 99999876554444444443222 234444455777888999999987432 445588999999999
Q ss_pred ecCCeEEEEEc
Q 001851 165 WCGENICIAIR 175 (1004)
Q Consensus 165 ~~~~~i~v~~~ 175 (1004)
|.++.|..|-.
T Consensus 254 F~~d~vl~~G~ 264 (325)
T KOG0649|consen 254 FVDDCVLIGGE 264 (325)
T ss_pred eecceEEEecc
Confidence 99887776653
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=90.03 E-value=3.5 Score=46.96 Aligned_cols=146 Identities=13% Similarity=0.277 Sum_probs=90.6
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~~~~L~ 103 (1004)
|+.|+||.+..+|-+|++-..+. .+..+.. -+..+-.-+.+.|+.++.+.++ || |.+|+|.
T Consensus 477 grtLivGGeastlsiWDLAapTp----------------rikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTP----------------RIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred CceEEeccccceeeeeeccCCCc----------------chhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 57899999999999999864321 1100111 1123455577788888888664 66 9999986
Q ss_pred CCcccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEec--CCeEEEEEcCceE
Q 001851 104 NLETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIRKGYM 179 (1004)
Q Consensus 104 ~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~~~y~ 179 (1004)
+-..+..+ ..+.|++|+.+..+..+|--+ ....+..|....+++. .+..+...|-++..+ ++++.||+.++++
T Consensus 540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql---qqhdF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL---QQHDFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---hhhhhhhhheecccCCCccceeeecccCcE
Confidence 53333322 335688888887766666654 4555655555544432 334455666676666 7899999997665
Q ss_pred EE-EcCCCCcccc
Q 001851 180 IL-NATNGALSEV 191 (1004)
Q Consensus 180 li-dl~~~~~~~L 191 (1004)
-+ ..+..+...|
T Consensus 617 evlh~skp~kyql 629 (705)
T KOG0639|consen 617 EVLHTSKPEKYQL 629 (705)
T ss_pred EEEecCCccceee
Confidence 44 4433334333
No 135
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.99 E-value=5.7 Score=44.55 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=58.5
Q ss_pred eEEEeCCC-------CcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCCe
Q 001851 97 IAFHRLPN-------LETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGEN 169 (1004)
Q Consensus 97 v~~~~L~~-------l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~~ 169 (1004)
+.+|.+.+ ++.++.....-++++++.- .++++++..++|.+|+++.+..+....+...+-.+.++...++.
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~ 141 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNY 141 (321)
T ss_dssp EEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTE
T ss_pred EEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccE
Confidence 67777654 2223332222234444433 56799999999999999965436665566677789999999999
Q ss_pred EEEEEc-CceEEEEcCC
Q 001851 170 ICIAIR-KGYMILNATN 185 (1004)
Q Consensus 170 i~v~~~-~~y~lidl~~ 185 (1004)
|++|.- ++..++..+.
T Consensus 142 I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 142 ILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESSSSEEEEEEET
T ss_pred EEEEEcccCEEEEEEEc
Confidence 999986 7777775543
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.95 E-value=14 Score=43.25 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=50.2
Q ss_pred CCCCceeEEEEecccCceeeeeC-c-eEEEeCCCCcccccccCCCCcEEEEecCCC--cEEEEEECCeEEEE
Q 001851 73 FSKKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDRR--GFLCFARQKRVCIF 140 (1004)
Q Consensus 73 ~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~--~~l~V~~kkki~l~ 140 (1004)
+++..|..|.+-+.++.|..=+| | |.+|.+.+..-+.++...--+.++++++.. +.|+||....+.|.
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 45779999999998888877776 6 999998887655555545566778887654 67888877775444
No 137
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=89.91 E-value=5.6 Score=44.35 Aligned_cols=165 Identities=14% Similarity=0.267 Sum_probs=104.0
Q ss_pred ccccccccCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEE
Q 001851 6 FDSLELISNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEV 83 (1004)
Q Consensus 6 f~~~~l~~~~~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~ 83 (1004)
|....|++.=...|+|+... |..++=|..+|.|.+|...-+ .++.+...++-+|+.+..
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-------------------nVk~~~ahh~eaIRdlaf 188 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-------------------NVKIIQAHHAEAIRDLAF 188 (464)
T ss_pred eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-------------------hhHHhhHhhhhhhheecc
Confidence 44445555555678887665 468999999999999975432 122223334569999999
Q ss_pred ecccCceeeeeC-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEEECCeEEEEEecC--CCceeEeeeeecCC
Q 001851 84 LASRQLLLSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQKRVCIFRHDG--GRGFVEVKDFGVPD 158 (1004)
Q Consensus 84 l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~--~~~f~~~kEi~l~d 158 (1004)
.|.-..+++++| + |.+|+-..-+.-..+ ...=.+.++.+.+..+.|+++.|.. .+--|+. |.....+ -....
T Consensus 189 SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tl--h~HKn 265 (464)
T KOG0284|consen 189 SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATL--HGHKN 265 (464)
T ss_pred CCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhh--hhccc
Confidence 999999999998 6 899884332221112 1122456777788889999998877 3333442 2111110 01245
Q ss_pred CceEEEec--CCeEEEEEc-CceEEEEcCCCCcccccCC
Q 001851 159 TVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPS 194 (1004)
Q Consensus 159 ~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~ 194 (1004)
.+..+.|. ++++.-+++ ....++|+. .+.+|+..
T Consensus 266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR--~mkEl~~~ 302 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIR--TMKELFTY 302 (464)
T ss_pred eEEEEEEcCCCCeeEEccCCceEEEEehh--HhHHHHHh
Confidence 67778887 467777776 456778887 45555543
No 138
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=62 Score=40.10 Aligned_cols=170 Identities=8% Similarity=0.111 Sum_probs=92.6
Q ss_pred cEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCC--c--------ccccccccceeeeeecCCCCCceeEEEEec
Q 001851 18 KIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPS--D--------YQSLRKESYELERTISGFSKKPILSMEVLA 85 (1004)
Q Consensus 18 ~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~--~--------~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~ 85 (1004)
=|.|...|+ +.++=|+=|-+|.+|++.+--....+|+ + ++.|....-..++.+-.-+.+.|..+..=|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 355655554 5677788899999999886432222222 0 011222222334444444677999999998
Q ss_pred ccCceeeeeC-c-eEEEeCCCCccc--cc-ccCCCCcEEEEecCCCcEE-EEEECCeEEEE-----------EecCCCce
Q 001851 86 SRQLLLSLSE-S-IAFHRLPNLETI--AV-LTKAKGANVYSWDDRRGFL-CFARQKRVCIF-----------RHDGGRGF 148 (1004)
Q Consensus 86 ~~~~ll~l~d-~-v~~~~L~~l~~~--~~-i~~~kg~~~f~~~~~~~~l-~V~~kkki~l~-----------~~~~~~~f 148 (1004)
...+++.=+| . |++|.+++-+.- .+ -....+|+++-+++....| -.+-.|.|.+| +...+| |
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR-F 295 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR-F 295 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe-E
Confidence 8888887777 3 999998764311 11 1334566666555533211 11122333333 222222 2
Q ss_pred eEee---e--------------eecCCCceEEEecCCeEEEEEcCceEEEEcCCCCc
Q 001851 149 VEVK---D--------------FGVPDTVKSMSWCGENICIAIRKGYMILNATNGAL 188 (1004)
Q Consensus 149 ~~~k---E--------------i~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~~~ 188 (1004)
..+. + |-+.-...+.+..++.+++...+...-+|+.+..-
T Consensus 296 W~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 296 WILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD 352 (1202)
T ss_pred EEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc
Confidence 1110 0 11232333455578888888888778888887543
No 139
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=8.1 Score=43.14 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.7
Q ss_pred CEEEEEeCCCcEEEEcCCCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSE 47 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~ 47 (1004)
++||-|-.+|.+++|+.....
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccCceEEEEEccCCC
Confidence 689999999999999988654
No 140
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=89.21 E-value=0.18 Score=38.21 Aligned_cols=30 Identities=20% Similarity=0.618 Sum_probs=25.2
Q ss_pred cCCcCCCccC-CcEEEEcCCCCeEEEecccCC
Q 001851 958 MCSLCSKKIG-TSVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 958 ~C~vC~k~l~-~~~f~v~p~~~~v~H~~C~~~ 988 (1004)
.|++|...+. ...+++.||| |++|..|+..
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~ 32 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-HVFHRSCIKE 32 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-EEEEHHHHHH
T ss_pred CCcCCChhhcCCCeEEEccCC-CeeCHHHHHH
Confidence 5999999995 3556679999 9999999864
No 141
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.13 E-value=5.9 Score=47.98 Aligned_cols=96 Identities=14% Similarity=0.248 Sum_probs=61.4
Q ss_pred cCceeeee-C-ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEeeeeecCCCceE
Q 001851 87 RQLLLSLS-E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVKDFGVPDTVKS 162 (1004)
Q Consensus 87 ~~~ll~l~-d-~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~kEi~l~d~~~~ 162 (1004)
.++||.=+ | .|.+|.+..-+-+.......=|+|+++++-..+.++. ...|+.||.+.+ ++... -..+.+.|++
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d-~~Vv~--W~Dl~~lITA 456 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD-KKVVD--WNDLRDLITA 456 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCc-CeeEe--ehhhhhhhee
Confidence 35555544 5 3788776543222333334446777777755555553 789999999884 23322 2446789999
Q ss_pred EEec--CCeEEEEEcCceEEE-EcCC
Q 001851 163 MSWC--GENICIAIRKGYMIL-NATN 185 (1004)
Q Consensus 163 l~~~--~~~i~v~~~~~y~li-dl~~ 185 (1004)
+++. |...+||+=+||+.+ ++..
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccC
Confidence 9998 678999998888765 4433
No 142
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=88.56 E-value=12 Score=34.47 Aligned_cols=62 Identities=13% Similarity=0.311 Sum_probs=44.6
Q ss_pred EEEEEEeC------CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 19 IDAVASYG------LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 19 I~ci~~~~------~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
|+|++..+ +.|+|||+|..|.+|.-++ +..+++. ..+|+.+..+....+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--------------------~~~Ei~e--~~~v~~L~~~~~~~F~Y~ 59 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--------------------IVAEITE--TDKVTSLCSLGGGRFAYA 59 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--------------------EEEEEec--ccceEEEEEcCCCEEEEE
Confidence 45555543 5899999999999997443 1222221 457899999988888888
Q ss_pred eeCc-eEEEeC
Q 001851 93 LSES-IAFHRL 102 (1004)
Q Consensus 93 l~d~-v~~~~L 102 (1004)
+.+| |-+|+-
T Consensus 60 l~NGTVGvY~~ 70 (111)
T PF14783_consen 60 LANGTVGVYDR 70 (111)
T ss_pred ecCCEEEEEeC
Confidence 8886 888874
No 143
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=88.34 E-value=46 Score=36.94 Aligned_cols=164 Identities=16% Similarity=0.240 Sum_probs=100.5
Q ss_pred cCCCCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCc
Q 001851 13 SNCSPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL 89 (1004)
Q Consensus 13 ~~~~~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ 89 (1004)
+.....|+|++.- +..|.||+..| |.+|.........- +....+.......+.-..-+|+.|+--++...
T Consensus 137 s~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r------~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~ 209 (445)
T KOG2139|consen 137 SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR------NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTI 209 (445)
T ss_pred chhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc------ccccccccchhheeCCCCceeeEEEEcCCCCE
Confidence 3445679999865 36899999999 88888665332100 00000000000111112359999999988777
Q ss_pred eeeee--Cc-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEE
Q 001851 90 LLSLS--ES-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMS 164 (1004)
Q Consensus 90 ll~l~--d~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~ 164 (1004)
++.-+ +. +.+|+.++-..+.-+ ...-|.+...++++...++.+ ......++.- .+.+...+-+..++.+++-+
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e--~q~wt~erw~lgsgrvqtac 287 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE--NQSWTKERWILGSGRVQTAC 287 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh--cccceecceeccCCceeeee
Confidence 77654 32 999987653322222 233467778888888777766 4444555522 22333334466788999999
Q ss_pred ec--CCeEEEEEcCceEEEEcCC
Q 001851 165 WC--GENICIAIRKGYMILNATN 185 (1004)
Q Consensus 165 ~~--~~~i~v~~~~~y~lidl~~ 185 (1004)
|. |.+|.+++..+-.++.+.-
T Consensus 288 WspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 288 WSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred ecCCCCEEEEEEcCCceEEEEee
Confidence 97 7899999888777777653
No 144
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=88.23 E-value=9.7 Score=44.28 Aligned_cols=221 Identities=18% Similarity=0.212 Sum_probs=118.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eEEEeCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IAFHRLPN 104 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~~~~L~~ 104 (1004)
..|+-++.+|+|-.|+++...... ....+.+-++.+ ++.||-++.+.++...++.-+ || |..|++|.
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~----------~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSA----------EKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred CeEEEeccccchhhhhhcccCCcc----------ccceeeeEEEec-ccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 589999999999999995422211 122233334443 477999999998888887765 56 99998862
Q ss_pred C-------ccc---ccccCCCCcE-EEEecCCCcEEEEE-ECCeEEEEEecCCCc--eeEeeeeecCCCceEEEecCCe-
Q 001851 105 L-------ETI---AVLTKAKGAN-VYSWDDRRGFLCFA-RQKRVCIFRHDGGRG--FVEVKDFGVPDTVKSMSWCGEN- 169 (1004)
Q Consensus 105 l-------~~~---~~i~~~kg~~-~f~~~~~~~~l~V~-~kkki~l~~~~~~~~--f~~~kEi~l~d~~~~l~~~~~~- 169 (1004)
- ++. ..+....++. .++.+..+.+|... ..+++.+++...... |...+| .+.|.++.+.+..
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e---~g~Plsvd~~ss~~ 452 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKE---HGYPLSVDRTSSRP 452 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccc---cCCcceEeeccchh
Confidence 1 111 0112222233 34555555555443 566676666553322 333333 3567788777532
Q ss_pred --EEEEEc-CceEEEEcCCCCcccccCCCCCCCC-------EEEEccCCeEEEEe-CC--eEEEEcCCCCcccCcceeec
Q 001851 170 --ICIAIR-KGYMILNATNGALSEVFPSGRIGPP-------LVVSLLSGELLLGK-EN--IGVFVDQNGKLLQADRICWS 236 (1004)
Q Consensus 170 --i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p-------~i~~~~~~E~Ll~~-~~--~gvfv~~~G~~~~~~~i~w~ 236 (1004)
.+...+ ..|.++++.+++...+++.+..+.| .|++-+++.+.+.. ++ .-+|-+..|.+.-. .+.=.
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s-~~a~~ 531 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS-MVAHK 531 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh-eeecc
Confidence 233334 4466777888877777765432211 23444455554432 22 23344456655421 11111
Q ss_pred CCCceEEE--eCCeEEEEcC-CeeEEEEc
Q 001851 237 EAPIAVII--QKPYAIALLP-RRVEVRSL 262 (1004)
Q Consensus 237 ~~P~~i~~--~~PYll~~~~-~~ieV~~l 262 (1004)
....++++ ..||+..... +++-.+++
T Consensus 532 ~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 532 DSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ceecceeecCCCceEEeecCCceeehhhc
Confidence 22233343 4678877664 34444444
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=88.12 E-value=5.7 Score=45.27 Aligned_cols=121 Identities=11% Similarity=0.165 Sum_probs=80.5
Q ss_pred EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee--Cc-eEEEeCCC
Q 001851 28 KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS--ES-IAFHRLPN 104 (1004)
Q Consensus 28 ~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~--d~-v~~~~L~~ 104 (1004)
.|-+...+|.+..|++.+.++- + .+...++.|-.-|...|..+.|++-- |. |.+|+...
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~--------------~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPI--------------F----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcc--------------c----chhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 5678889999999998875431 1 11223566888888888887776644 43 88998765
Q ss_pred CcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeee-cCCCceEEEecCC
Q 001851 105 LETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWCGE 168 (1004)
Q Consensus 105 l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l~~~~~ 168 (1004)
-+....+.-....+.+++.++...||++ .+++|..|.......- ++-+. ....+++++|.-.
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P--v~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP--VAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC--ceEeeecccceeEEEeeec
Confidence 4333344445566778888887889998 7899999988743222 22222 2334788888754
No 146
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=87.91 E-value=40 Score=38.26 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=93.9
Q ss_pred cEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-
Q 001851 18 KIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS- 94 (1004)
Q Consensus 18 ~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~- 94 (1004)
.|+.+..+ |++++-..++|++-.+++.... .+..+. ..-+.-.++...+=|+..++.+=+
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~---------------~lt~vs--~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGS---------------QLTVVS--DETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCc---------------EEEEEe--eccccceeEEeeEcCCceEEeccCC
Confidence 45544444 6899999999998777766432 122111 111234678888878765555433
Q ss_pred Cc-eEEEeCCCCccccccc-CCCCcEEEEecCCCcEEEEEECCe-EEEEEecCCCceeEeeeeecCCC--ceEEEec--C
Q 001851 95 ES-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFARQKR-VCIFRHDGGRGFVEVKDFGVPDT--VKSMSWC--G 167 (1004)
Q Consensus 95 d~-v~~~~L~~l~~~~~i~-~~kg~~~f~~~~~~~~l~V~~kkk-i~l~~~~~~~~f~~~kEi~l~d~--~~~l~~~--~ 167 (1004)
|+ |.+|+|.+-..++..+ ..-.++.+.+.++...++++.... +.+|.+.. .+.+|.|.+++. +.++.|. |
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK---l~n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK---LKNFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh---hcccceeeccccccceeEEEcCCC
Confidence 46 9999986643333332 334567888888888899987766 77777663 334456777774 7888887 5
Q ss_pred CeEEEEEc-CceEEEEcCCCCcccc
Q 001851 168 ENICIAIR-KGYMILNATNGALSEV 191 (1004)
Q Consensus 168 ~~i~v~~~-~~y~lidl~~~~~~~L 191 (1004)
.++.++.. =..++++-.+.+...+
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred CeEEeecceeEEEEEecccccceee
Confidence 55555532 2334445445544443
No 147
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.78 E-value=0.53 Score=39.02 Aligned_cols=51 Identities=24% Similarity=0.385 Sum_probs=38.2
Q ss_pred HHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 310 LTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 310 Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
|++.|+|++|+.+++.....+ ..-..+....|..++..|+|++|...+.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-----PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ChhccCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999998742111 112356667899999999999999999874
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.69 E-value=4.3 Score=45.69 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred CcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 17 PKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 17 ~~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
++|+-++... +..++||++|+|+.|++.... ++.|++. .+..+|+-|.+-....-+++.
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------------~~vwt~~-----AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------------KPVWTLK-----AHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCC-------------CceeEEE-----eccCCcceEEecCCCCcceee
Confidence 4566665543 578999999999999987642 2345442 356799999998877544444
Q ss_pred e--Cc-eEEEeCCCCccccc----ccCCCCcEEEEecCCC-cEEEEEE-CCeEEEEEec
Q 001851 94 S--ES-IAFHRLPNLETIAV----LTKAKGANVYSWDDRR-GFLCFAR-QKRVCIFRHD 143 (1004)
Q Consensus 94 ~--d~-v~~~~L~~l~~~~~----i~~~kg~~~f~~~~~~-~~l~V~~-kkki~l~~~~ 143 (1004)
+ |+ |++|+++.-.+... ..-.+ ..||+.+++- +.++++. |..+.++...
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~r-l~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGR-LHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccceEEEEeecCCCCcccccccccccc-eeecccCCCcceEEEecCccceEEEeecc
Confidence 3 34 99999865543211 10011 4567777665 5678874 4446666654
No 149
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.36 E-value=62 Score=37.35 Aligned_cols=127 Identities=9% Similarity=0.134 Sum_probs=68.5
Q ss_pred ecCCeEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEE-eCCeEEEEcCCCCcccCcceeecCCC---
Q 001851 165 WCGENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG-KENIGVFVDQNGKLLQADRICWSEAP--- 239 (1004)
Q Consensus 165 ~~~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~-~~~~gvfv~~~G~~~~~~~i~w~~~P--- 239 (1004)
..++.++++.. ...+-+|..+|+...-.+.+....|. ..++.+.++ .++..+.+|.. .+.+.|....
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---~~~~~vy~~~~~g~l~ald~~-----tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA---VDGGRIYLVDQNDRVYALDTR-----GGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE---EECCEEEEEcCCCeEEEEECC-----CCcEEEcccccCC
Confidence 45777777765 56788999999754433333211222 233444443 34444445542 2334554321
Q ss_pred ---ceEEEeCCeEEEEcC-CeeEEEEccCCCceeEEEeeCCcccc---ccCCCeEEEEeC-CeEEEecc
Q 001851 240 ---IAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVRHL---IPSSNAVVVALE-NSIFGLFP 300 (1004)
Q Consensus 240 ---~~i~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~l~~~~~l---~~~~~~v~vas~-~~i~~l~~ 300 (1004)
.+.++..-+|++... +.+.+.+.. ++.++-+..+...... ...++.+|+.+. +.++++.+
T Consensus 326 ~~~~sp~v~~g~l~v~~~~G~l~~ld~~-tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 326 RLLTAPVLYNGYLVVGDSEGYLHWINRE-DGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CcccCCEEECCEEEEEeCCCEEEEEECC-CCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 122344557766665 567777775 5777766665432111 124567887765 47888764
No 150
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.22 E-value=18 Score=46.03 Aligned_cols=161 Identities=12% Similarity=0.181 Sum_probs=86.6
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCceeEEEEeccc--C-c
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKPILSMEVLASR--Q-L 89 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-k~~I~qI~~l~~~--~-~ 89 (1004)
.++++|+... ++.+.|||+||.+....++..... +......+. .+.. ..++..|...-.. . +
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~-----------~~~~~~~ri-~n~~~~g~vv~m~a~~~~~~S~~ 1165 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS-----------KRVATQVRI-PNLKKDGVVVSMHAFTAIVQSHV 1165 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc-----------cceeeeeec-ccccCCCceEEeeccccccccee
Confidence 4567776665 579999999999999999875321 111111111 1111 1244444433322 2 5
Q ss_pred eeeeeC-c-eEEEeCCCCccc---ccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCcee-EeeeeecCC--Cc
Q 001851 90 LLSLSE-S-IAFHRLPNLETI---AVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFV-EVKDFGVPD--TV 160 (1004)
Q Consensus 90 ll~l~d-~-v~~~~L~~l~~~---~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~-~~kEi~l~d--~~ 160 (1004)
++..++ + +..|+.....-. ..-.+.--++.+|+|+..+-+++| .++.+.+|.+. |+ .+.+...|+ ++
T Consensus 1166 lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i 1241 (1431)
T KOG1240|consen 1166 LVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPI 1241 (1431)
T ss_pred EEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee----cCceeecccCcccCCc
Confidence 556666 3 777876432211 111222346889999987778888 55666676654 32 233333443 33
Q ss_pred eEEEec---C--CeEE-EEE--cCceEEEEcCCCCccccc
Q 001851 161 KSMSWC---G--ENIC-IAI--RKGYMILNATNGALSEVF 192 (1004)
Q Consensus 161 ~~l~~~---~--~~i~-v~~--~~~y~lidl~~~~~~~L~ 192 (1004)
..+..+ + ..++ .|+ .++..+.|+.+|.-...+
T Consensus 1242 ~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred ceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 334332 2 2333 333 256777788877544333
No 151
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.13 E-value=1.1 Score=29.93 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCEEEEEeCCCcEEEEc
Q 001851 17 PKIDAVASYGLKILLGCSDGSLKIYS 42 (1004)
Q Consensus 17 ~~I~ci~~~~~~L~iGt~~G~l~~y~ 42 (1004)
..|+|++..++.+.++|+.|.|.+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 46999999999999999999999884
No 152
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=87.04 E-value=25 Score=38.22 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=86.1
Q ss_pred cCCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 13 SNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 13 ~~~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
......|.+.+.-|-.+.+|+..+.|.+|++..-. +.++....- ..-.....++|+..+.+..+|+
T Consensus 139 ~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d-------------kgPF~tf~i-~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 139 NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFD-------------KGPFTTFSI-TDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred ecCCCcceeECCCCcEEEEecCCCeEEEEEecccC-------------CCCceeEcc-CCCCccceeeeEEcCCCCEEEE
Confidence 33445666777777788899988899999987542 223322110 1012568999999999887777
Q ss_pred eeC-c-eEEEeCCCCcccccccCCCCcE----EEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEe
Q 001851 93 LSE-S-IAFHRLPNLETIAVLTKAKGAN----VYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSW 165 (1004)
Q Consensus 93 l~d-~-v~~~~L~~l~~~~~i~~~kg~~----~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~ 165 (1004)
-++ + +.+.+-.+-..+.++....+.. ..+..++...+..+ .+++|.+|....|..+...+.. ...++.++.|
T Consensus 205 sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~f 283 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRF 283 (311)
T ss_pred EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCcccccc
Confidence 776 3 5665543322222222222221 23445666666666 5689999998766544444432 2345566666
Q ss_pred cCCeEEEEEc
Q 001851 166 CGENICIAIR 175 (1004)
Q Consensus 166 ~~~~i~v~~~ 175 (1004)
.-....+++.
T Consensus 284 nP~~~mf~sa 293 (311)
T KOG1446|consen 284 NPRYAMFVSA 293 (311)
T ss_pred CCceeeeeec
Confidence 6544444433
No 153
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=87.03 E-value=94 Score=39.04 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcc
Q 001851 507 LDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEES 576 (1004)
Q Consensus 507 vDT~Ll~~yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~ 576 (1004)
+.++|+..|.+.++.+....++..-..-+ .--|..|+..|...|+.++|++++.+.....
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~----------~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKT----------TVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCC----------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 56788999999887655554544110001 1248899999999999999999999876543
No 154
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=86.76 E-value=0.33 Score=38.12 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=28.3
Q ss_pred CCCcCCcCCCccC-CcEEEEcC-CCCeEEEecccCCchhhhhh
Q 001851 955 SDSMCSLCSKKIG-TSVFAVYP-NGKTIVHFVCFRDSQSMKAV 995 (1004)
Q Consensus 955 ~~~~C~vC~k~l~-~~~f~v~p-~~~~v~H~~C~~~~~~~~~~ 995 (1004)
...+|.+|+++|- ...++|-| || ..+|..|... .+.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cg-apyHR~C~~~-~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECG-APYHRDCWEK-AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCC-CcccHHHHhh-CCceEe
Confidence 5789999999994 23445576 66 9999999854 455544
No 155
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=86.63 E-value=0.43 Score=40.69 Aligned_cols=39 Identities=23% Similarity=0.561 Sum_probs=27.8
Q ss_pred CCcCCcCCCccCC-----------cEEEEcCCCCeEEEecccC---Cchhhhhh
Q 001851 956 DSMCSLCSKKIGT-----------SVFAVYPNGKTIVHFVCFR---DSQSMKAV 995 (1004)
Q Consensus 956 ~~~C~vC~k~l~~-----------~~f~v~p~~~~v~H~~C~~---~~~~~~~~ 995 (1004)
+..|++|..+|.. -.+++-+|| |.||.+|+. ..+..||.
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-H~FH~~Ci~~Wl~~~~~CP~ 71 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-HIFHFHCISQWLKQNNTCPL 71 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-EEEEHHHHHHHHTTSSB-TT
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-CCEEHHHHHHHHhcCCcCCC
Confidence 4469999999932 256667899 999999997 44456654
No 156
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=86.46 E-value=27 Score=37.11 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=60.3
Q ss_pred CCCceeEEEEecccCceeeeeC-c-eEEEeCCCCcccccccCCCCcEEEEecCC--CcEEEEE-ECCeEEEEEecCCCce
Q 001851 74 SKKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSWDDR--RGFLCFA-RQKRVCIFRHDGGRGF 148 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~--~~~l~V~-~kkki~l~~~~~~~~f 148 (1004)
+-+||+||+.-.+..+|+.++- . ..||.-.+-+-+.+...-.| ..+|+|.+ ...++-+ ....+.||....|.+
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ- 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCcceeeeccccceeEEEEcCCCcE-
Confidence 5679999999999999999984 4 66665333333333333334 34555543 3334433 667788888876643
Q ss_pred eEeeeeecCCCceEEEec-CCeEEEEE
Q 001851 149 VEVKDFGVPDTVKSMSWC-GENICIAI 174 (1004)
Q Consensus 149 ~~~kEi~l~d~~~~l~~~-~~~i~v~~ 174 (1004)
+..+..+.+++.+.|. ++.+|+++
T Consensus 87 --la~~k~~~~Vk~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 87 --LATWKTNSPVKRVDFSFGGNLILAS 111 (327)
T ss_pred --EEEeecCCeeEEEeeccCCcEEEEE
Confidence 3334567788888876 44444443
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=86.39 E-value=3.8 Score=47.78 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=75.1
Q ss_pred CCCceeEEEEecccCceeeeeC-c----eEEEeCCCCcccccccCCCCc-EEEEecCCCcEEEEEECCeEEEEEecCCCc
Q 001851 74 SKKPILSMEVLASRQLLLSLSE-S----IAFHRLPNLETIAVLTKAKGA-NVYSWDDRRGFLCFARQKRVCIFRHDGGRG 147 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~~~ll~l~d-~----v~~~~L~~l~~~~~i~~~kg~-~~f~~~~~~~~l~V~~kkki~l~~~~~~~~ 147 (1004)
+.++|.|+.-=..+..|.+++. + |.+|.|+.-.....+.+.||. .+..+.+...+++|++++.|.+|.+...+
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe- 598 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQE- 598 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHH-
Confidence 4689999999988888877653 2 999998764433334556664 34566888889999999999999987422
Q ss_pred eeEeee-eecCCCceEEEec--CCeEEEEE-cCceEEEEcCCC
Q 001851 148 FVEVKD-FGVPDTVKSMSWC--GENICIAI-RKGYMILNATNG 186 (1004)
Q Consensus 148 f~~~kE-i~l~d~~~~l~~~--~~~i~v~~-~~~y~lidl~~~ 186 (1004)
.+|+ ....--+.+|+.. |+.|++|+ .+.++-+|+.-+
T Consensus 599 --lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 599 --LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred --HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 1222 1122234556655 57777775 478888988754
No 158
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.13 E-value=9.4 Score=42.79 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=92.5
Q ss_pred cEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c
Q 001851 18 KIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S 96 (1004)
Q Consensus 18 ~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~ 96 (1004)
++-|+-..|..|.+|..||++.+|+.....+. + . ..-+.+.|..|...|+..+|+.++. +
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~----------------l--~-e~~~~~eV~DL~FS~dgk~lasig~d~ 208 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI----------------L--E-EIAHHAEVKDLDFSPDGKFLASIGADS 208 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh----------------h--h-hHhhcCccccceeCCCCcEEEEecCCc
Confidence 55566556679999999999999986543321 1 0 1124779999999999999999975 6
Q ss_pred eEEEeCCCCccccccc-CCC-----CcEEEEecCCCcEEEE-EE---CCeEEEEE---ecCCCceeEeee-eecCCCceE
Q 001851 97 IAFHRLPNLETIAVLT-KAK-----GANVYSWDDRRGFLCF-AR---QKRVCIFR---HDGGRGFVEVKD-FGVPDTVKS 162 (1004)
Q Consensus 97 v~~~~L~~l~~~~~i~-~~k-----g~~~f~~~~~~~~l~V-~~---kkki~l~~---~~~~~~f~~~kE-i~l~d~~~~ 162 (1004)
..||+..+...++..+ ..| .|. |..|.....+.+ +. .++|..++ |+.+ .|-+.+. +.-...+.+
T Consensus 209 ~~VW~~~~g~~~a~~t~~~k~~~~~~cR-F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSs 286 (398)
T KOG0771|consen 209 ARVWSVNTGAALARKTPFSKDEMFSSCR-FSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISS 286 (398)
T ss_pred eEEEEeccCchhhhcCCcccchhhhhce-ecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCccee
Confidence 8899987654443322 222 233 333332233222 22 23444444 3433 3333332 333457788
Q ss_pred EEec--CCeEEEEEc-CceEEEEcCCCCccccc
Q 001851 163 MSWC--GENICIAIR-KGYMILNATNGALSEVF 192 (1004)
Q Consensus 163 l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~ 192 (1004)
|+.. |..+.+|+. ....+++..+=+...+.
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 8775 678999987 45677777654444433
No 159
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=86.10 E-value=18 Score=38.01 Aligned_cols=131 Identities=13% Similarity=0.169 Sum_probs=78.8
Q ss_pred CCCcEEEE-EEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 15 CSPKIDAV-ASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 15 ~~~~I~ci-~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
-+..|.-+ -+++ +.++=.+.+|++..|++.... .+++ .+.+.+|+.+.+.++ +.+++
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt------------------~v~s--L~~~s~VtSlEvs~d-G~ilT 200 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT------------------EVQS--LEFNSPVTSLEVSQD-GRILT 200 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCc------------------EEEE--EecCCCCcceeeccC-CCEEE
Confidence 34556543 3344 456666999999999976432 1111 234789999999876 56677
Q ss_pred eeCc--eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEec--CCCceeEeeeeecCCCceEEEecCC
Q 001851 93 LSES--IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHD--GGRGFVEVKDFGVPDTVKSMSWCGE 168 (1004)
Q Consensus 93 l~d~--v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~--~~~~f~~~kEi~l~d~~~~l~~~~~ 168 (1004)
++++ |.+|+..+|+.+....-.-++..-.+.++. .++|+......+|+++ .|...... .-.-++++.++.|.-+
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPD 278 (334)
T ss_pred EecCceeEEeccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCC
Confidence 7773 999998888766543323344455556666 4666656555566554 23221110 0012567888887743
No 160
>PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal
Probab=86.07 E-value=7.7 Score=41.96 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCCCChHHHhccCC---CC--chhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001851 701 PTRKKLLSALESISGYNPEVLLKRLP---AD--ALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYE 770 (1004)
Q Consensus 701 ~~r~kLl~fL~~s~~Yd~~~~L~~~~---~~--~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~ 770 (1004)
..=-||..+|- +.+.+.+.++..++ .+ .-..-++.-.-|+|+||+|+++++. +-+++++.|+...+.
T Consensus 206 EdLlKLQSLLC-gpsl~v~silpvLE~Lsed~~~gLSlhlLC~trL~~~E~sId~LLd--rCPqAVV~YA~helk 277 (353)
T PF14763_consen 206 EDLLKLQSLLC-GPSLDVESILPVLEPLSEDTDGGLSLHLLCITRLGEYEKSIDKLLD--RCPQAVVPYANHELK 277 (353)
T ss_pred HHHHHHHHHHc-CCCccHHHHHHHHhhcccccccCeehhhhhhhhhccHHHHHHHHHH--hCcHHHHHHhhhhcc
Confidence 33455655553 56777666655543 22 2334567777899999999999995 589999999998874
No 161
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=86.06 E-value=29 Score=39.83 Aligned_cols=253 Identities=13% Similarity=0.139 Sum_probs=124.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--c-eEEEeC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFHRL 102 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--~-v~~~~L 102 (1004)
|+++|+.+.+|.|.++++... +++++.+. ...-..+.+.+....+++-+- + +.+++.
T Consensus 48 gr~~yv~~rdg~vsviD~~~~------------------~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATG------------------KVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSS------------------SEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCcc------------------cEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 578999999999999987642 23333332 334566888888777765542 3 999999
Q ss_pred CCCcccccccCC------C--CcEEEEecCCCcEEEEEEC--CeEEEEEecCCCceeEeeeeecCCCceEEEecC--CeE
Q 001851 103 PNLETIAVLTKA------K--GANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG--ENI 170 (1004)
Q Consensus 103 ~~l~~~~~i~~~------k--g~~~f~~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~--~~i 170 (1004)
.+++++..++.. + .+..+.....+...+++.+ .+|.+..+.+. .....+.+.....+....|.. .++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-cccceeeecccccccccccCccccee
Confidence 898877654321 1 1122222333444555555 56766666533 233445676777788888874 466
Q ss_pred EEEEc--CceEEEEcCCCCcccccCCCCCCC--CEEEE----------c-cCCeEE---EEeCCeEEEEcCCCCcccCcc
Q 001851 171 CIAIR--KGYMILNATNGALSEVFPSGRIGP--PLVVS----------L-LSGELL---LGKENIGVFVDQNGKLLQADR 232 (1004)
Q Consensus 171 ~v~~~--~~y~lidl~~~~~~~L~~~~~~~~--p~i~~----------~-~~~E~L---l~~~~~gvfv~~~G~~~~~~~ 232 (1004)
++|.. +...++|..++...-+...++... |.... . ..+.+. ++.+...+.-....+.+ .+
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv--~~ 264 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV--KT 264 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE--EE
T ss_pred eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE--EE
Confidence 67643 556778888876655555554321 11111 1 112222 23332222111222222 24
Q ss_pred eeecCCCceEEEe--CCeEEEE---cC--CeeEEEEccCCCceeEEEeeCCc-ccc----ccCCCeEEEEe--CC-eEEE
Q 001851 233 ICWSEAPIAVIIQ--KPYAIAL---LP--RRVEVRSLRVPYALIQTIVLQNV-RHL----IPSSNAVVVAL--EN-SIFG 297 (1004)
Q Consensus 233 i~w~~~P~~i~~~--~PYll~~---~~--~~ieV~~l~~~~~lvQti~l~~~-~~l----~~~~~~v~vas--~~-~i~~ 297 (1004)
|.-.+.|..+..+ .+|+.+= .+ +.|.|.+.. +...+.+|..... +.+ ...+..+|++. .+ .|..
T Consensus 265 I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~-tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 265 IPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK-TLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp EE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC-GTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred EECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc-CcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 5555666554443 4677776 23 578888886 3555556543222 111 23455666643 23 5555
Q ss_pred ecccC
Q 001851 298 LFPVP 302 (1004)
Q Consensus 298 l~~~~ 302 (1004)
+....
T Consensus 344 ~D~~T 348 (369)
T PF02239_consen 344 YDAKT 348 (369)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 54443
No 162
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.90 E-value=31 Score=37.59 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=85.5
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCceeEEEEecccC-ceee
Q 001851 15 CSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKPILSMEVLASRQ-LLLS 92 (1004)
Q Consensus 15 ~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-k~~I~qI~~l~~~~-~ll~ 92 (1004)
+...|.+|..-.++|+|-..+- |++|....+.. +.+.+.... .+. -+.+.|..+ .+++
T Consensus 93 f~~~I~~V~l~r~riVvvl~~~-I~VytF~~n~k-----------------~l~~~et~~NPkG--lC~~~~~~~k~~La 152 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLENK-IYVYTFPDNPK-----------------LLHVIETRSNPKG--LCSLCPTSNKSLLA 152 (346)
T ss_pred eccceeeEEEcCCeEEEEecCe-EEEEEcCCChh-----------------heeeeecccCCCc--eEeecCCCCceEEE
Confidence 3568889999999998887665 99998775431 112222111 222 222233232 2233
Q ss_pred eeC---c-eEEEeCCCCcc---cccccCCCCcEEEEecCCCcEEEEEE-CCe-EEEEEecCCCceeEeeeeecCCCceEE
Q 001851 93 LSE---S-IAFHRLPNLET---IAVLTKAKGANVYSWDDRRGFLCFAR-QKR-VCIFRHDGGRGFVEVKDFGVPDTVKSM 163 (1004)
Q Consensus 93 l~d---~-v~~~~L~~l~~---~~~i~~~kg~~~f~~~~~~~~l~V~~-kkk-i~l~~~~~~~~f~~~kEi~l~d~~~~l 163 (1004)
.-+ | |.+.+|...+. .........+.|++++.+...+|-++ |+. |.||.-..|...+++|.=.-+-.+.+|
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 322 3 88888765543 11112334667888887766677664 444 446665545434444432334567889
Q ss_pred EecC--CeEEEEEcCc-eEEEEcCC
Q 001851 164 SWCG--ENICIAIRKG-YMILNATN 185 (1004)
Q Consensus 164 ~~~~--~~i~v~~~~~-y~lidl~~ 185 (1004)
+|.. .++||+++++ .+++.+..
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9874 5899998876 45555543
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.70 E-value=67 Score=38.76 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=87.1
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccc-cceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKE-SYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
.+..|++.. .+++..|..+|.|.+..+....+...+. + |... ...+.++.. -++..|.-+.--+. +-=++-
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~---g-laa~snLsmNQtLe-GH~~sV~vvTWNe~-~QKLTt 88 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS---G-LAAASNLSMNQTLE-GHNASVMVVTWNEN-NQKLTT 88 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc---c-cccccccchhhhhc-cCcceEEEEEeccc-cccccc
Confidence 467788765 3699999999999999888765532110 0 1110 111111112 23444544443333 333455
Q ss_pred eC--c-eEEEeCCCCcccccccC--CCC-cEEEEecCCCcEEEEE-ECCeEEEEEecCCCcee-EeeeeecCCCceEEEe
Q 001851 94 SE--S-IAFHRLPNLETIAVLTK--AKG-ANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFV-EVKDFGVPDTVKSMSW 165 (1004)
Q Consensus 94 ~d--~-v~~~~L~~l~~~~~i~~--~kg-~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~-~~kEi~l~d~~~~l~~ 165 (1004)
+| | |.||.|..-.+...+.. .|. +...+++.+..+|||+ ..+.+.+=..+++|.|. .+|-..+ ..+.|
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l----~hv~w 164 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLL----AHVLW 164 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhec----cceee
Confidence 66 5 88898865444332222 222 3456778777889987 66677666777555552 2332322 35677
Q ss_pred cCC--eEEEEEc-CceEEEEcC
Q 001851 166 CGE--NICIAIR-KGYMILNAT 184 (1004)
Q Consensus 166 ~~~--~i~v~~~-~~y~lidl~ 184 (1004)
..+ .+.++.. .+-.++|..
T Consensus 165 s~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred cccHHHHHhhhcCCcEEEeccc
Confidence 753 4555655 345555554
No 164
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=85.53 E-value=39 Score=34.77 Aligned_cols=104 Identities=14% Similarity=0.258 Sum_probs=68.2
Q ss_pred CCceeEEEEecccCceeeeeC---c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEEC----CeEEEEEecCCC
Q 001851 75 KKPILSMEVLASRQLLLSLSE---S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQ----KRVCIFRHDGGR 146 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d---~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~k----kki~l~~~~~~~ 146 (1004)
..+|..+.--|..+.++++.+ . +.+|++. .+++..+. ...++.+++++....++++.- +.|.+|...
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--- 133 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--- 133 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC---
Confidence 347999999999988888764 2 9999984 44455543 355678889988777887743 346666554
Q ss_pred ceeEeeeeecCCCceEEEec--CCeEEEEEc-------CceEEEEcC
Q 001851 147 GFVEVKDFGVPDTVKSMSWC--GENICIAIR-------KGYMILNAT 184 (1004)
Q Consensus 147 ~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~-------~~y~lidl~ 184 (1004)
....+.+..-+ .+..++|. |..++.++. ++|.|.+..
T Consensus 134 ~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 134 KKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 33444444333 35788997 556665542 456666654
No 165
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=85.39 E-value=7.7 Score=43.97 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=70.6
Q ss_pred cCCCCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC--------CCceeEEEE
Q 001851 13 SNCSPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS--------KKPILSMEV 83 (1004)
Q Consensus 13 ~~~~~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------k~~I~qI~~ 83 (1004)
..-...|.|++.-+ .+++.|+++|.|..|.+-...+ -+. .+.-.+.. +.=|+.+.+
T Consensus 324 rg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp--------------lf~-~~~AHgv~~~~~~~~~~~Witsla~ 388 (479)
T KOG0299|consen 324 RGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP--------------LFT-SRLAHGVIPELDPVNGNFWITSLAV 388 (479)
T ss_pred eCCCCCeeeEEEecccceeeccCCceEEEeeecccCc--------------eeE-eeccccccCCccccccccceeeeEe
Confidence 33345799998886 6899999999999998765322 111 11001110 125788999
Q ss_pred ecccCceeeeeC-c-eEEEeCCC----CcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEe
Q 001851 84 LASRQLLLSLSE-S-IAFHRLPN----LETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRH 142 (1004)
Q Consensus 84 l~~~~~ll~l~d-~-v~~~~L~~----l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~ 142 (1004)
+|..+++..=+. | |.+|...+ +.++..++-.-=++.+++..+..+|++++.+-=.+=+|
T Consensus 389 i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 389 IPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccccccee
Confidence 998888876553 5 99998753 34444444222244566665555677776554444444
No 166
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=0.86 Score=49.62 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=57.0
Q ss_pred ccCCcccchhchHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccceEEECCCCcCCcCCCccCCc---
Q 001851 896 KLLPRETKLQNLLPFLEP---LLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTS--- 969 (1004)
Q Consensus 896 ~~lP~~~~l~~l~~fL~~---~l~~~~~~~r~~~i~~~l~~~~~~~~~~el~~~~~~~v~i~~~~~C~vC~k~l~~~--- 969 (1004)
..+|-.+|+..+++-+.- ..++-....+-.+..|.|-+.--..+.+++ -+.++.|.+|--.+-.+
T Consensus 233 ~~~~~r~Pi~l~r~~~t~~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~eql---------~n~D~~C~ICmde~~h~~~~ 303 (491)
T COG5243 233 QFPYVRVPIYLIRQMYTCFYALFRRIREHARFRRATKDLNAMYPTATEEQL---------TNSDRTCTICMDEMFHPDHE 303 (491)
T ss_pred hccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcchhhhhhh---------cCCCCeEEEecccccCCCCc
Confidence 445567788877765443 333333333334444444333222233333 34688999998774321
Q ss_pred --------EEEEcCCCCeEEEecccCC---chhhhhhccCC
Q 001851 970 --------VFAVYPNGKTIVHFVCFRD---SQSMKAVAKGS 999 (1004)
Q Consensus 970 --------~f~v~p~~~~v~H~~C~~~---~~~~~~~~~~~ 999 (1004)
.=.+.||| |+.|.+|+++ .|+.||.-+.|
T Consensus 304 ~~~~~~~~~pKrLpCG-HilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 304 PLPRGLDMTPKRLPCG-HILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred cCcccccCCccccccc-ceeeHHHHHHHHHhccCCCcccCc
Confidence 34678999 9999999984 48889887665
No 167
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.28 E-value=90 Score=37.21 Aligned_cols=111 Identities=11% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 15 CSPKIDAVASYGL--KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 15 ~~~~I~ci~~~~~--~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
-+.+|.||+.|.. -++.+-=+|.+.+|+-+. .++++++. .+..||..-+.+.+.+-+++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyet------------------qtmVksfe-V~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYET------------------QTMVKSFE-VSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccc------------------ceeeeeee-ecccchhhheeeeccceEEE
Confidence 4568999999974 788889999999998663 24555543 46779999999999999999
Q ss_pred eeC-c-eEEEeCCCCcccccccC-CCCcEEEEecCCCcEEEEEEC-CeEEEEEecC
Q 001851 93 LSE-S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFARQ-KRVCIFRHDG 144 (1004)
Q Consensus 93 l~d-~-v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~~k-kki~l~~~~~ 144 (1004)
=+| . |.+|+..+++.+...+- ..=+.++++.+....+.-++. -.|-++.|..
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 888 3 99999988876654322 112346677776655444433 3566788773
No 168
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=85.18 E-value=20 Score=44.36 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=79.5
Q ss_pred cHHHHHHHHHh----c----CcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCC--------ChHhHHH-H
Q 001851 535 DVKICEEILQK----K----NHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKF--------NPESIIE-Y 597 (1004)
Q Consensus 535 ~~~~~~~~L~~----~----~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~-y 597 (1004)
+.++++++|++ . --|..|+..|..+|++++||..|.--+.-...| .+.|... ..+.+.- |
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d---~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD---YELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcccHHHHHHHH
Confidence 44555555543 2 238999999999999999999998655433222 2333210 1111111 1
Q ss_pred hc--ccCCCCchhHHhhchhhhccC-ccchhccccc--CCCChH---HH-------HH-HHhhcCccchhhhHHHHHhcc
Q 001851 598 LK--PLCGTDPMLVLEFSMLVLESC-PTQTIELFLS--GNIPAD---LV-------NS-YLKQYSPSMQGRYLELMLAMN 661 (1004)
Q Consensus 598 L~--~L~~~~~~li~~~~~wll~~~-p~~~i~if~~--~~l~~~---~v-------l~-~L~~~~~~l~~~YLE~li~~~ 661 (1004)
-+ ++.+.+++++|+.+...-+.. -..|++-|.. ...||. ++ .. |+.....+.++.+||--+...
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 11 235677889999887776543 2334433322 122322 22 22 233333466788888877532
Q ss_pred cCCCCcchHHHHHHHHHHH
Q 001851 662 ENSISGNLQNEMVQIYLSE 680 (1004)
Q Consensus 662 ~~~~~~~~h~~L~~~Yl~~ 680 (1004)
....+-.-++.++.+||..
T Consensus 311 ~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKN 329 (895)
T ss_pred cccccccHHHHHHHHHHHh
Confidence 2223456678899988853
No 169
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=84.96 E-value=1.1e+02 Score=40.89 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 307 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
-+.++..|++++|+..++..-..+. .-...+...|..++.+|+|++|.++|.++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-----TDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4456789999999999876421110 11234555689999999999999999774
No 170
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.40 E-value=35 Score=38.43 Aligned_cols=143 Identities=12% Similarity=0.187 Sum_probs=86.6
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--ceEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--SIAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--~v~~~~L~ 103 (1004)
|.+|.-|++|.+..+|.+.... .+.+.++..+ +.++|..|.-.|....|++|+- .+.+|+..
T Consensus 236 GkyLAsaSkD~Taiiw~v~~d~---------------~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 236 GKYLASASKDSTAIIWIVVYDV---------------HFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred CeeEeeccCCceEEEEEEecCc---------------ceeeeeeeec-ccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence 5789999999999888876432 2455554443 4679999999999999999864 48888876
Q ss_pred CCcccccccCC--CCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeecCCCceEEEe--cCCe-EEEEEcCc
Q 001851 104 NLETIAVLTKA--KGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSW--CGEN-ICIAIRKG 177 (1004)
Q Consensus 104 ~l~~~~~i~~~--kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~--~~~~-i~v~~~~~ 177 (1004)
+-+.....+.. ..+++.|+.++..++++|. .+.+..+..+ |+.....+.+..| .+..|+. .|.+ +.++..+.
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~-~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDP-KVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccc-eeEEEEEcCCCcEEEEEecccc
Confidence 65433322222 3456778888776777774 4445444444 3322111112111 2333443 3444 34455566
Q ss_pred eEEEEcCCC
Q 001851 178 YMILNATNG 186 (1004)
Q Consensus 178 y~lidl~~~ 186 (1004)
-.++|..+.
T Consensus 378 i~l~~~e~~ 386 (519)
T KOG0293|consen 378 IRLYNREAR 386 (519)
T ss_pred eeeechhhh
Confidence 777776654
No 171
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=84.27 E-value=2.5 Score=32.55 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCCCcEEEEEEeC--CEEEEEeCCCcEEEEcCCC
Q 001851 14 NCSPKIDAVASYG--LKILLGCSDGSLKIYSPGS 45 (1004)
Q Consensus 14 ~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~ 45 (1004)
..+.+|+|++.+. +-|.+||++|.|.+|++..
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 4577899887775 6899999999999999854
No 172
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=84.19 E-value=8.8 Score=42.14 Aligned_cols=124 Identities=16% Similarity=0.277 Sum_probs=85.2
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
.+.|..+.+. +-+++-|+.||+|..|++..+.+ +. . -..+|+.|..+.+=|..+.+..-
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-----------------~~-t-lt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-----------------MI-T-LTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCce-----------------eE-e-eecccceeeEEecCCchhhhhcc
Confidence 4567776666 67999999999999999876432 11 1 11358899999988887766654
Q ss_pred e-CceEEEeCCCCcccccccCCC-CcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCC
Q 001851 94 S-ESIAFHRLPNLETIAVLTKAK-GANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDT 159 (1004)
Q Consensus 94 ~-d~v~~~~L~~l~~~~~i~~~k-g~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~ 159 (1004)
+ |.+.-|++|.-+.+.++...+ .+++.+++.+ +.++++ -+..+.++.|..|..|+....+.-|+.
T Consensus 338 s~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 338 SPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred CCccceeccCCccchhhccccccceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 4 469999999877777754433 3455666543 667776 456678889987767776554544443
No 173
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=84.04 E-value=29 Score=36.85 Aligned_cols=139 Identities=13% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--c-eEEEeC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFHRL 102 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--~-v~~~~L 102 (1004)
|+++.+|..+-.|-..+.... ...... .+ +.-+..|.-- ..|=+++++. | |.+...
T Consensus 118 g~~~~~~~kdD~it~id~r~~------------------~~~~~~-~~-~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 118 GEYIAVGNKDDRITFIDARTY------------------KIVNEE-QF-KFEVNEISWN-NSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred CCEEEEecCcccEEEEEeccc------------------ceeehh-cc-cceeeeeeec-CCCCEEEEecCCceEEEEec
Confidence 466677777776666554432 211111 11 2344444433 2344555554 4 888888
Q ss_pred CCCcccccccC-CCCcEEEEecCCCcEEEEEECC-eEEEEEecCCCceeEeeeee-cCCCceEEEecC--CeEEEEEcCc
Q 001851 103 PNLETIAVLTK-AKGANVYSWDDRRGFLCFARQK-RVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWCG--ENICIAIRKG 177 (1004)
Q Consensus 103 ~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~~kk-ki~l~~~~~~~~f~~~kEi~-l~d~~~~l~~~~--~~i~v~~~~~ 177 (1004)
|+|+++.++.- .-+|.|+.+++....+++|.-. -+.|+..++ ..-.|-|+ +.=+++++.|.- .+|.-|+..-
T Consensus 177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceeeccCccc
Confidence 99999887632 2344455557776678888444 455666552 22223332 445788888874 4555444432
Q ss_pred e-EEEEcCCCCc
Q 001851 178 Y-MILNATNGAL 188 (1004)
Q Consensus 178 y-~lidl~~~~~ 188 (1004)
| .|-++.||..
T Consensus 254 ~IDIA~vetGd~ 265 (313)
T KOG1407|consen 254 FIDIAEVETGDR 265 (313)
T ss_pred eEEeEecccCCe
Confidence 2 3334567753
No 174
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.98 E-value=3.2 Score=40.17 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=49.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 303 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
+-.+-+..+++|+|++|+..++.+... -+. .....+.+...|+.+|.+++|++|+..+.. +|.|.|.-
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~r-------FirLhP~h 80 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR-YPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR-------FIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc-CCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHH-------HHHhCCCC
Confidence 345567899999999999999875210 000 112345677789999999999999998765 67777765
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.89 E-value=41 Score=36.54 Aligned_cols=157 Identities=14% Similarity=0.201 Sum_probs=88.0
Q ss_pred cccccccccCCCCcEEE--EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEE
Q 001851 5 AFDSLELISNCSPKIDA--VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSME 82 (1004)
Q Consensus 5 ~f~~~~l~~~~~~~I~c--i~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~ 82 (1004)
.|...||.++-.--|.| .+.||.++.-|++|+++-+|+....+. .|.+....+. +...|-.|.
T Consensus 2 ~~s~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~--------------~W~~Ts~Wra-h~~Si~rV~ 66 (361)
T KOG2445|consen 2 DFSMAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG--------------TWSCTSSWRA-HDGSIWRVV 66 (361)
T ss_pred CccccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC--------------ceEEeeeEEe-cCCcEEEEE
Confidence 35556666554444665 577899999999999999999754322 4555444332 345666655
Q ss_pred Ee-cccC-ceeeee-Cc-eEEEeCC--CCcc-------cccccCCC-CcEEEEecCCC-cE-EEE-EECCeEEEEEecC-
Q 001851 83 VL-ASRQ-LLLSLS-ES-IAFHRLP--NLET-------IAVLTKAK-GANVYSWDDRR-GF-LCF-ARQKRVCIFRHDG- 144 (1004)
Q Consensus 83 ~l-~~~~-~ll~l~-d~-v~~~~L~--~l~~-------~~~i~~~k-g~~~f~~~~~~-~~-l~V-~~kkki~l~~~~~- 144 (1004)
=. |+.+ ++.+++ |+ +.+|.=. +++. ..++...+ .++-+++.+.. |. ++. ...+-|.||+.-+
T Consensus 67 WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 67 WAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 44 4554 445555 54 8888741 1211 11222222 23334444433 43 333 3778899999753
Q ss_pred C--CceeEeeeee-cCC-------CceEEEecC-----CeEEEEEcC
Q 001851 145 G--RGFVEVKDFG-VPD-------TVKSMSWCG-----ENICIAIRK 176 (1004)
Q Consensus 145 ~--~~f~~~kEi~-l~d-------~~~~l~~~~-----~~i~v~~~~ 176 (1004)
. ..+....||. +++ +.-++.|+. ..|.||+..
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e 193 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE 193 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc
Confidence 1 2355556764 232 234566762 467777665
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=83.20 E-value=18 Score=43.45 Aligned_cols=157 Identities=11% Similarity=0.096 Sum_probs=87.0
Q ss_pred CcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCc-eee
Q 001851 17 PKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL-LLS 92 (1004)
Q Consensus 17 ~~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~-ll~ 92 (1004)
..+++++..- ++.+|||+.|.|+.-.-.+..... ...|+... +...+..+|.-|.-.|-... +++
T Consensus 348 ~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~----------~~~~~~~~-~~~~h~g~v~~v~~nPF~~k~fls 416 (555)
T KOG1587|consen 348 VGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP----------EVSYKGHS-TFITHIGPVYAVSRNPFYPKNFLS 416 (555)
T ss_pred cceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc----------cccccccc-cccccCcceEeeecCCCccceeee
Confidence 3566766663 689999999999884433322210 01111111 11234668999988887644 455
Q ss_pred eeC-ceEEEeCC-CCcccccccC-CCCcEEEEecCCCcEEEEEE--CCeEEEEEecCCCceeEeeeeecCCCceE-EEec
Q 001851 93 LSE-SIAFHRLP-NLETIAVLTK-AKGANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVEVKDFGVPDTVKS-MSWC 166 (1004)
Q Consensus 93 l~d-~v~~~~L~-~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~~--kkki~l~~~~~~~~f~~~kEi~l~d~~~~-l~~~ 166 (1004)
.+| ++.+|... ...|+..... ..-++..++++.+..+++++ .+.|-+|.+..+. -..+..+.....+.. +.|.
T Consensus 417 ~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 417 VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWS 495 (555)
T ss_pred eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecC
Confidence 667 48888754 4444433222 22367788888876666554 4556665543221 111111212234433 3443
Q ss_pred --CCeEEEEEcCc-eEEEEcCC
Q 001851 167 --GENICIAIRKG-YMILNATN 185 (1004)
Q Consensus 167 --~~~i~v~~~~~-y~lidl~~ 185 (1004)
|..|++|...| -.++++..
T Consensus 496 ~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 496 PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCcEEEEecCCCcEEEEEcCc
Confidence 56799998855 66677753
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=83.17 E-value=2.5 Score=36.78 Aligned_cols=50 Identities=32% Similarity=0.480 Sum_probs=30.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (1004)
-+++.|+|++|+.+++... .. .....++..+|..++..|+|++|+..|.+
T Consensus 34 ~~~~~~~y~~A~~~~~~~~-----~~-~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 34 CYFQQGKYEEAIELLQKLK-----LD-PSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHTTHHHHHHHHHHCHT-----HH-HCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567778888888876511 10 11224445557778888888888877754
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=83.14 E-value=65 Score=33.90 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=125.5
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc-eEE
Q 001851 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAF 99 (1004)
Q Consensus 21 ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~-v~~ 99 (1004)
++...+++|++|.+.|.|.++.+..-.+.+. ..++...+-.. ..+..||..+..- ..+|++.+|| |.-
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------~~~gk~~iv~e-qahdgpiy~~~f~--d~~Lls~gdG~V~g 85 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------EPPGKLKIVPE-QAHDGPIYYLAFH--DDFLLSGGDGLVYG 85 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhcccc--------CCCCCcceeec-cccCCCeeeeeee--hhheeeccCceEEE
Confidence 5556678899999999999999876433221 11111111111 2456789888765 4678888887 777
Q ss_pred EeCCCCcc------c-------cc-ccCCCCcEEEEecCCCcEEEEEECCeEEEEEec--CCCceeEeeeee-cCCCceE
Q 001851 100 HRLPNLET------I-------AV-LTKAKGANVYSWDDRRGFLCFARQKRVCIFRHD--GGRGFVEVKDFG-VPDTVKS 162 (1004)
Q Consensus 100 ~~L~~l~~------~-------~~-i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~--~~~~f~~~kEi~-l~d~~~~ 162 (1004)
|...+++. . .. ......++..-++++.+.|..|. +.-.+|.|+ .|+ |+ +++- -.|-+.+
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~-i~--r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGR-IQ--REYRGHTDYVHS 161 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCE-EE--EEEcCCcceeee
Confidence 76544321 0 01 12334567778888777666655 555678876 232 33 3332 3466777
Q ss_pred EEecC--CeEEEEEcC-ceEEEEcCCCCccccc-CCCC--CCCCE----EEEc-cCCeEEEEeC--CeEEEEcCCCCccc
Q 001851 163 MSWCG--ENICIAIRK-GYMILNATNGALSEVF-PSGR--IGPPL----VVSL-LSGELLLGKE--NIGVFVDQNGKLLQ 229 (1004)
Q Consensus 163 l~~~~--~~i~v~~~~-~y~lidl~~~~~~~L~-~~~~--~~~p~----i~~~-~~~E~Ll~~~--~~gvfv~~~G~~~~ 229 (1004)
+.-++ ..|+-|... ...+-|+.|+.....+ +..+ -.+|- |-.+ .+..-|+|-+ +..++-=...+++
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t- 240 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSEST- 240 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCce-
Confidence 77653 467777664 4667799888644332 2221 12332 2223 3445666643 3455533333332
Q ss_pred CcceeecCCCceEEEeCCeEEEEcC-CeeEEEEc
Q 001851 230 ADRICWSEAPIAVIIQKPYAIALLP-RRVEVRSL 262 (1004)
Q Consensus 230 ~~~i~w~~~P~~i~~~~PYll~~~~-~~ieV~~l 262 (1004)
..+..+.....+.|..--|++... +.++-+.+
T Consensus 241 -~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 241 -CVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred -EEEecccceeEeeeecceEEEeccccceeeeee
Confidence 345555555566666666666653 34444443
No 179
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.13 E-value=11 Score=45.61 Aligned_cols=132 Identities=16% Similarity=0.250 Sum_probs=83.6
Q ss_pred CCcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc-Ccee
Q 001851 16 SPKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR-QLLL 91 (1004)
Q Consensus 16 ~~~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~-~~ll 91 (1004)
...|.|++.+- +.|+=|+.||.|..|++....+.. ++.+ ..-.|..++..|.. +.++
T Consensus 133 ~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~------------------t~~~-nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 133 ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS------------------TFRS-NSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred ccceeeeeeccCCccEEEecCCCceEEEEeeecccccc------------------cccc-cchhhhceeeccCCCceEE
Confidence 35788998885 678889999999999998765421 1111 12366666666644 6777
Q ss_pred eeeC-c-eEEEeCCCCccc-ccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEec
Q 001851 92 SLSE-S-IAFHRLPNLETI-AVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC 166 (1004)
Q Consensus 92 ~l~d-~-v~~~~L~~l~~~-~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~ 166 (1004)
+..| | |..|+|..-... .++ ...-.+.|.-+++++..|+-+ ..|++.|+.+.+++.+ ..--|..--++..+.|+
T Consensus 194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKHTINTIAPVGRVKWR 272 (839)
T ss_pred EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-ceeEEeecceeeeeeec
Confidence 7888 5 999998542211 111 112234455566766777776 5577999999865432 22335545566778887
Q ss_pred C
Q 001851 167 G 167 (1004)
Q Consensus 167 ~ 167 (1004)
-
T Consensus 273 P 273 (839)
T KOG0269|consen 273 P 273 (839)
T ss_pred c
Confidence 4
No 180
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.24 E-value=0.34 Score=50.46 Aligned_cols=33 Identities=33% Similarity=0.643 Sum_probs=26.9
Q ss_pred CCCCcCCcCCCccCCcE--------EEEcCCCCeEEEecccC
Q 001851 954 TSDSMCSLCSKKIGTSV--------FAVYPNGKTIVHFVCFR 987 (1004)
Q Consensus 954 ~~~~~C~vC~k~l~~~~--------f~v~p~~~~v~H~~C~~ 987 (1004)
.++..|++|+++|..++ .+-.-|+ |++|..|.+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn-HvFHEfCIr 262 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-HVFHEFCIR 262 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc-cchHHHhhh
Confidence 35789999999997653 4456898 999999987
No 181
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.21 E-value=22 Score=45.25 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=98.4
Q ss_pred HHHHHHHHhcC---cHHHHHHHHHhhc--cHHHHHHHHHHHhhcccCCCCccccccCCChHhHHHHhcccCCCCchhHHh
Q 001851 537 KICEEILQKKN---HYTALLELYKSNA--RHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLE 611 (1004)
Q Consensus 537 ~~~~~~L~~~~---~~~~L~~Ly~~~g--~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~yL~~L~~~~~~li~~ 611 (1004)
+.++..|..+. +...+...|.+.+ ..+.||+...++..... + ..-+..++||-.| -|.+.+++
T Consensus 778 ~~vr~~l~~~~~~~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~-~---------~~ad~al~hll~L--vdvn~lfn 845 (1265)
T KOG1920|consen 778 DAVRNALERRAPDKFNLFILTSYVKSNPPEIEEALQKIKELQLAQV-A---------VSADEALKHLLFL--VDVNELFN 845 (1265)
T ss_pred HHHHHHHhhcCcchhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc-c---------hhHHHHHHHHHhh--ccHHHHHH
Confidence 34455554432 2355556666666 67888888877653110 0 1123456666544 34455555
Q ss_pred hchhhhccCccchhcccccCCCChHHHHHHHhhcCccchhhhHHHHHhcccCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 001851 612 FSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQ 691 (1004)
Q Consensus 612 ~~~wll~~~p~~~i~if~~~~l~~~~vl~~L~~~~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~~~~~~~~~~~~ 691 (1004)
.+-=+.+ -..++.+--.-+.+|.+-++||+.. ..+...|-.+-|. .....|.+.+..+..-
T Consensus 846 ~ALgtYD--l~Lal~VAq~SqkDPkEyLP~L~el-~~m~~~~rkF~ID------------~~L~ry~~AL~hLs~~---- 906 (1265)
T KOG1920|consen 846 SALGTYD--LDLALLVAQKSQKDPKEYLPFLNEL-KKMETLLRKFKID------------DYLKRYEDALSHLSEC---- 906 (1265)
T ss_pred hhhcccc--hHHHHHHHHHhccChHHHHHHHHHH-hhchhhhhheeHH------------HHHHHHHHHHHHHHHc----
Confidence 5433332 1222222212247777777777765 2333333333331 1122333333222111
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCChHHHh----------------ccCCCCchhHHHHHHHhccccHHHHHHHHHHHh
Q 001851 692 QKWDEKAYSPTRKKLLSALESISGYNPEVLL----------------KRLPADALYEERAILLGKMNQHELALSLYVHKL 755 (1004)
Q Consensus 692 ~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L----------------~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L 755 (1004)
| ..+-...+.|.+....|+..-.| +.|....++++.++.|.+.|++++||.-+. .-
T Consensus 907 ~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~-~~ 978 (1265)
T KOG1920|consen 907 G-------ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYK-EC 978 (1265)
T ss_pred C-------ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHH-Hh
Confidence 0 00122333344433333322222 122234578899999999999999999988 57
Q ss_pred CCHHHHHHHHHHH
Q 001851 756 CVPELALAYCDRV 768 (1004)
Q Consensus 756 ~D~~~Ae~YC~~~ 768 (1004)
+|++.|..-..+.
T Consensus 979 ~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 979 GDWREALSLAAQL 991 (1265)
T ss_pred ccHHHHHHHHHhh
Confidence 8998888777644
No 182
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=81.64 E-value=12 Score=42.69 Aligned_cols=155 Identities=12% Similarity=0.135 Sum_probs=96.6
Q ss_pred cEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 18 KIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 18 ~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
.+.|+-.+- +-+++|+++|.|..|++..+. +++... -+-.+|..|..++....+++-+
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k------------------vvqeYd-~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK------------------VVQEYD-RHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchH------------------HHHHHH-hhhhheeeeEEccCCceEeeec
Confidence 456776663 467999999999999987532 122111 1356999999999998888888
Q ss_pred C-c-eEEEeCCCCcccccccCCC--CcEEEEecCCCcEEEE-EECCeEEEEEecCCCceeEe-----eeeecCCCceEEE
Q 001851 95 E-S-IAFHRLPNLETIAVLTKAK--GANVYSWDDRRGFLCF-ARQKRVCIFRHDGGRGFVEV-----KDFGVPDTVKSMS 164 (1004)
Q Consensus 95 d-~-v~~~~L~~l~~~~~i~~~k--g~~~f~~~~~~~~l~V-~~kkki~l~~~~~~~~f~~~-----kEi~l~d~~~~l~ 164 (1004)
| + +.+|....--++..+.... .+-++++.++.+.++. .....|.+|.... .|+.- +-...++-...+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~--~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP--PFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc--ccccCHhhhhcceeccCceeeEE
Confidence 8 4 8888864432222222211 2224445554443333 3667788888652 23221 1245677777777
Q ss_pred ec--CCeEEEEEcCc-eEEEEcCCCCcccccC
Q 001851 165 WC--GENICIAIRKG-YMILNATNGALSEVFP 193 (1004)
Q Consensus 165 ~~--~~~i~v~~~~~-y~lidl~~~~~~~L~~ 193 (1004)
|. |.+||-|...+ ..+.|-.+......+.
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence 76 67999998854 6677877765444443
No 183
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.46 E-value=4.2 Score=46.02 Aligned_cols=140 Identities=19% Similarity=0.312 Sum_probs=94.5
Q ss_pred EEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-
Q 001851 19 IDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES- 96 (1004)
Q Consensus 19 I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~- 96 (1004)
+-|--.|+.-+-+|-++|++-.|.-.... -+++. .-++.+|..|.+-+....+++-+ |.
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~ske-----------------PLvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKE-----------------PLVKI--LCHRGPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcc-----------------hHHHH--HhcCCCcceEEECCCCcEEeecccccc
Confidence 33444455678899999999999743211 11111 12478999999999888887765 54
Q ss_pred eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCC-C---ceeEeeeeecCCCceEEEec--CCeE
Q 001851 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGG-R---GFVEVKDFGVPDTVKSMSWC--GENI 170 (1004)
Q Consensus 97 v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~-~---~f~~~kEi~l~d~~~~l~~~--~~~i 170 (1004)
+.+|+|..|..+.+....-+++..+++ ++|.|+++...-+.+|.-..+ . .+..+ .-.++.++..+.|+ .|.|
T Consensus 317 ~kIWDlR~~~ql~t~~tp~~a~~ls~S-qkglLA~~~G~~v~iw~d~~~~s~~~~~pYm-~H~~~~~V~~l~FcP~EDvL 394 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRTPHPASNLSLS-QKGLLALSYGDHVQIWKDALKGSGHGETPYM-NHRCGGPVEDLRFCPYEDVL 394 (545)
T ss_pred eeEeeeccccccceeecCCCccccccc-cccceeeecCCeeeeehhhhcCCCCCCcchh-hhccCcccccceeccHHHee
Confidence 999999888766555444566666665 458899998888999874211 1 11111 12356688889888 5899
Q ss_pred EEEEcCceE
Q 001851 171 CIAIRKGYM 179 (1004)
Q Consensus 171 ~v~~~~~y~ 179 (1004)
+||...++.
T Consensus 395 GIGH~~G~t 403 (545)
T KOG1272|consen 395 GIGHAGGIT 403 (545)
T ss_pred eccccCCce
Confidence 999988765
No 184
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=81.25 E-value=58 Score=37.70 Aligned_cols=69 Identities=17% Similarity=0.384 Sum_probs=47.8
Q ss_pred CCCcEEEEecCCCcEEEEEE-CCeEEEEEecC-CCceeEeeeeecCCCceEEEecC-CeEEEEEcCceEEEEc
Q 001851 114 AKGANVYSWDDRRGFLCFAR-QKRVCIFRHDG-GRGFVEVKDFGVPDTVKSMSWCG-ENICIAIRKGYMILNA 183 (1004)
Q Consensus 114 ~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~-~~~f~~~kEi~l~d~~~~l~~~~-~~i~v~~~~~y~lidl 183 (1004)
.-..+++..+++...++|++ ..-|.||+.+. ++.......... .+++.+.|.. +..+++...+|.|+=-
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence 34456666777777899985 45688999985 334444444554 7888899985 4666777788888755
No 185
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=81.24 E-value=0.71 Score=37.87 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=30.8
Q ss_pred CcCCcCCCccCCcEEEEcCCCCeEEEecccCCc---hhhhhhccC
Q 001851 957 SMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDS---QSMKAVAKG 998 (1004)
Q Consensus 957 ~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~---~~~~~~~~~ 998 (1004)
-.|++|++.+.++ ++.|+| |++...|+... ...||+.+.
T Consensus 2 ~~Cpi~~~~~~~P--v~~~~G-~v~~~~~i~~~~~~~~~cP~~~~ 43 (63)
T smart00504 2 FLCPISLEVMKDP--VILPSG-QTYERRAIEKWLLSHGTDPVTGQ 43 (63)
T ss_pred cCCcCCCCcCCCC--EECCCC-CEEeHHHHHHHHHHCCCCCCCcC
Confidence 3699999999987 347999 99999998733 556887764
No 186
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=81.18 E-value=45 Score=37.05 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=79.2
Q ss_pred ceEEEeCCCCcc-cccccCCCCcEEEEecCCC-cEEEEEECCeEEEEEecCCCceeE-------ee-e-eec--CCCceE
Q 001851 96 SIAFHRLPNLET-IAVLTKAKGANVYSWDDRR-GFLCFARQKRVCIFRHDGGRGFVE-------VK-D-FGV--PDTVKS 162 (1004)
Q Consensus 96 ~v~~~~L~~l~~-~~~i~~~kg~~~f~~~~~~-~~l~V~~kkki~l~~~~~~~~f~~-------~k-E-i~l--~d~~~~ 162 (1004)
.|.+|+=..-.+ +-+-...|++++.++.+-. ..++||.+..|.|+..+....... .. + +.- .-++++
T Consensus 121 vVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVts 200 (445)
T KOG2139|consen 121 VVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTS 200 (445)
T ss_pred EEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeE
Confidence 377776443211 1112345789999997755 469999999999998763100000 00 1 112 246889
Q ss_pred EEecCCe-EEE-EE--cCceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEeCCeEEE
Q 001851 163 MSWCGEN-ICI-AI--RKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVF 220 (1004)
Q Consensus 163 l~~~~~~-i~v-~~--~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~~~~gvf 220 (1004)
|+|.++- +.+ ++ ...+.+-|.++|..++|.+.+-.+..+..+.+++.+|.|..--++|
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davf 262 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVF 262 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccccee
Confidence 9999652 332 22 2568888999999999987665455577888999998875433444
No 187
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=80.96 E-value=0.96 Score=33.20 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=22.8
Q ss_pred CCcCCCccCCcEEEEcCCCCeEEEecccCC
Q 001851 959 CSLCSKKIGTSVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 959 C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~ 988 (1004)
|++|.+.+.+ ++++.|+| |++++.|+.+
T Consensus 1 C~iC~~~~~~-~~~~~~CG-H~fC~~C~~~ 28 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCG-HSFCKECIEK 28 (39)
T ss_dssp ETTTTSB-SS-EEEECTTS-EEEEHHHHHH
T ss_pred CCCCCCcccC-cCEECCCC-CchhHHHHHH
Confidence 8899998887 55559999 9999999865
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=80.87 E-value=41 Score=34.67 Aligned_cols=91 Identities=14% Similarity=0.247 Sum_probs=58.7
Q ss_pred CcEEEEecCCCcEEEEE---ECCeEEEEEecCCCceeEeeeeecCCCceEEEec--CCeEEEEEc----CceEEEEcCCC
Q 001851 116 GANVYSWDDRRGFLCFA---RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIR----KGYMILNATNG 186 (1004)
Q Consensus 116 g~~~f~~~~~~~~l~V~---~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~----~~y~lidl~~~ 186 (1004)
.++.|+++++...+||. ..+++.||... +. .+.++. ...+.++.|. |+.+++|.- ....+.|+.+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~---~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK---KIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc---EeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 38899999988777665 35689999886 32 333332 3455678997 678887753 24688898866
Q ss_pred CcccccCCCCCCCCEEEEccCCeEEEE
Q 001851 187 ALSEVFPSGRIGPPLVVSLLSGELLLG 213 (1004)
Q Consensus 187 ~~~~L~~~~~~~~p~i~~~~~~E~Ll~ 213 (1004)
....-+... ..-.+.+-+++.++++
T Consensus 136 ~~i~~~~~~--~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 136 KKISTFEHS--DATDVEWSPDGRYLAT 160 (194)
T ss_pred EEeeccccC--cEEEEEEcCCCCEEEE
Confidence 543332222 1234667788988874
No 189
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=80.32 E-value=10 Score=42.45 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=93.4
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
.-.+.|++.|- ..|+.|..|..+..|+-...+ ++-+ ...+|..|.+++.-+..|.|+++
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~------------------cl~t-lh~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS------------------CLAT-LHGHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCCcc------------------hhhh-hhhccceEEEEEEcCCCCeeEEc
Confidence 45788999886 478999999988888754321 1111 12358899999999999999999
Q ss_pred eC-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEE--EECCeEEEEEecCCCceeEeeee--ecCCCceEEEec
Q 001851 94 SE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCF--ARQKRVCIFRHDGGRGFVEVKDF--GVPDTVKSMSWC 166 (1004)
Q Consensus 94 ~d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V--~~kkki~l~~~~~~~~f~~~kEi--~l~d~~~~l~~~ 166 (1004)
+. . +.+|++.+++.+... ...|.+++.++.+-...|++ +....|..|.+... ..+-++ .-...|-+|+|.
T Consensus 283 skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~---~p~~~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE---EPLGEIPPAHDGEIWSLAYH 359 (464)
T ss_pred cCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc---ccccCCCcccccceeeeecc
Confidence 95 4 999998766555432 24567778877765433433 35667776666521 112222 223467889997
Q ss_pred --CCeEEEEEcCc
Q 001851 167 --GENICIAIRKG 177 (1004)
Q Consensus 167 --~~~i~v~~~~~ 177 (1004)
|..+|-|....
T Consensus 360 PlGhil~tgsnd~ 372 (464)
T KOG0284|consen 360 PLGHILATGSNDR 372 (464)
T ss_pred ccceeEeecCCCc
Confidence 77888776643
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=80.13 E-value=4.6 Score=41.99 Aligned_cols=66 Identities=26% Similarity=0.434 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
.+...+++.|+|++|+.+++.+. ..-.............|..+|..++|++|...|.. +|..||..
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~--~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~-------fi~~yP~~ 75 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLI--DRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER-------FIKLYPNS 75 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHH--HH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH-------HHHH-TT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHHCCCC
Confidence 44567889999999999998752 11111123345566779999999999999999866 67888765
No 191
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=80.09 E-value=0.61 Score=50.21 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=34.2
Q ss_pred CCcCCcCCCccCCcEEEEcCCCCeEEEecccC---CchhhhhhccCC
Q 001851 956 DSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFR---DSQSMKAVAKGS 999 (1004)
Q Consensus 956 ~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~---~~~~~~~~~~~~ 999 (1004)
...|++|-|+..++.+. .=-| -|++|.|+. ++.+.|||++-+
T Consensus 300 ~~~CpvClk~r~Nptvl-~vSG-yVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVL-EVSG-YVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred cccChhHHhccCCCceE-Eecc-eEEeHHHHHHHHHhcCCCCccCCc
Confidence 57999999999887544 4456 899999987 458999999865
No 192
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.88 E-value=23 Score=37.21 Aligned_cols=129 Identities=21% Similarity=0.338 Sum_probs=77.3
Q ss_pred EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEec--ccCceeeee-Cc-e
Q 001851 22 VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA--SRQLLLSLS-ES-I 97 (1004)
Q Consensus 22 i~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~--~~~~ll~l~-d~-v 97 (1004)
++.||.+|.-.++||.|.+|.+..+.. ..+.-+..+ +..||-|+.-.- ..++|..++ |+ |
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~---------------s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQ---------------SKLLAELTG-HSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCC---------------ceeeeEecC-CCCCeeEEeecccccCcEeeEeecCceE
Confidence 577899999999999999999876542 133333343 466999987665 446666665 66 8
Q ss_pred EEEeCCCCc--ccccc-cCCCCcEEEEecCCC-c-EEEEE-ECCeEEEEEecCCCceeEeeeeec-CCCceEEEec
Q 001851 98 AFHRLPNLE--TIAVL-TKAKGANVYSWDDRR-G-FLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWC 166 (1004)
Q Consensus 98 ~~~~L~~l~--~~~~i-~~~kg~~~f~~~~~~-~-~l~V~-~kkki~l~~~~~~~~f~~~kEi~l-~d~~~~l~~~ 166 (1004)
.+++-..-. ..+.- ...-.+++++.-+.. | .|++| ..++|.+++++.+......|.+.. +-.+.+++|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 888854321 11110 111234555554433 3 45555 889999999985422322233222 2245667775
No 193
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=79.69 E-value=67 Score=35.12 Aligned_cols=151 Identities=11% Similarity=0.180 Sum_probs=83.5
Q ss_pred CCCceeEEEEecccCceeeeeC-c-eEEEeCCCCccc------ccccCCCCcEEEEecCCCcEEEEE--ECCeEEEEEec
Q 001851 74 SKKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETI------AVLTKAKGANVYSWDDRRGFLCFA--RQKRVCIFRHD 143 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~l~~~------~~i~~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~ 143 (1004)
+++.|+.+....+...|.++++ + |.+|++.+|+.. .+++- -..+.+++.++-..++|. ...+|.+|...
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 5789999999999999999987 5 999999887532 12322 245666665554444444 45678888763
Q ss_pred ---CCC-ceeEeee----eecCC--CceEEEecCCeEEEEE---cCceEEEEcCCCCcccccCCCCCCCCEEEEccCCeE
Q 001851 144 ---GGR-GFVEVKD----FGVPD--TVKSMSWCGENICIAI---RKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGEL 210 (1004)
Q Consensus 144 ---~~~-~f~~~kE----i~l~d--~~~~l~~~~~~i~v~~---~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~ 210 (1004)
+|. .|..+++ |.-.. .+.++...|+..++.+ .+..+|.++. |+...-..+.....-.....+++.|
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF 242 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF 242 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence 121 2322221 22111 2344555565444443 2567777877 5433222222111222333467788
Q ss_pred EEEeC---Ce---EEEEcCCCC
Q 001851 211 LLGKE---NI---GVFVDQNGK 226 (1004)
Q Consensus 211 Ll~~~---~~---gvfv~~~G~ 226 (1004)
+.+.+ ++ -+++..+|.
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~ 264 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGT 264 (420)
T ss_pred EEEecCCCCceEEEEEeccCcc
Confidence 76432 22 234566774
No 194
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=79.42 E-value=85 Score=34.36 Aligned_cols=145 Identities=9% Similarity=0.118 Sum_probs=85.2
Q ss_pred EEecccCceeeeeC-c--eEEEeC-----CCCcccccccCCC----CcEEEEecCCCcEEEE-EECCeEEEEEecC----
Q 001851 82 EVLASRQLLLSLSE-S--IAFHRL-----PNLETIAVLTKAK----GANVYSWDDRRGFLCF-ARQKRVCIFRHDG---- 144 (1004)
Q Consensus 82 ~~l~~~~~ll~l~d-~--v~~~~L-----~~l~~~~~i~~~k----g~~~f~~~~~~~~l~V-~~kkki~l~~~~~---- 144 (1004)
.+.|. +.+++.++ . |.||.. .+|+.+..+-..| +++.+|+++++.+++- ...+++.+|..+-
T Consensus 235 avSP~-GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 235 AVSPD-GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeCCC-CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 34554 45555555 2 888774 2344333333333 5788999888776554 4667888886431
Q ss_pred CCceeEeeeeecC-----CCceEEEec--CCeEEEEEcCceEEEEcCCCCcccccCC-CCCCCCEEEEccCCeEEEEeCC
Q 001851 145 GRGFVEVKDFGVP-----DTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPS-GRIGPPLVVSLLSGELLLGKEN 216 (1004)
Q Consensus 145 ~~~f~~~kEi~l~-----d~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~-~~~~~p~i~~~~~~E~Ll~~~~ 216 (1004)
+..-+.+|+.+.| ..|.-++.. |+.+.++..+...++...+|...+-+-. -...-.+|.+-+++.|+..+++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 2223345665433 345555555 6788899999999999998865543321 1111234556678888875554
Q ss_pred e--EEEEcCCCCc
Q 001851 217 I--GVFVDQNGKL 227 (1004)
Q Consensus 217 ~--gvfv~~~G~~ 227 (1004)
- -+|-|..|..
T Consensus 394 r~vrv~~ntpg~~ 406 (420)
T KOG2096|consen 394 RYVRVIRNTPGWH 406 (420)
T ss_pred eeeeeecCCCchh
Confidence 3 3444666653
No 195
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=78.97 E-value=64 Score=38.96 Aligned_cols=190 Identities=21% Similarity=0.259 Sum_probs=97.1
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc--Cceee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR--QLLLS 92 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~--~~ll~ 92 (1004)
.-+.|+++. |++|.-|.--|.|.+|++.+-. +.+. ...+..-|..+...... +.||.
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----------------~~~~---~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----------------YTCF---MEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhh----------------hhhh---eecccceeEEEeecCchhhhHhhh
Confidence 356666665 5799999999999999987532 1110 11233445555443321 34443
Q ss_pred eeC--c-eEEEeCC-CCcccccccC-CCCcEE--EEe-cCCCcEEEEEECCeEEEEEec----CCCceeEeeeeecCCCc
Q 001851 93 LSE--S-IAFHRLP-NLETIAVLTK-AKGANV--YSW-DDRRGFLCFARQKRVCIFRHD----GGRGFVEVKDFGVPDTV 160 (1004)
Q Consensus 93 l~d--~-v~~~~L~-~l~~~~~i~~-~kg~~~--f~~-~~~~~~l~V~~kkki~l~~~~----~~~~f~~~kEi~l~d~~ 160 (1004)
-+. . |++|+.. ++.++.++-. .-.++. |+. +.+..-|-.+..|.| .|+.. .|+.|.......-..+.
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceE
Confidence 333 2 8888864 3444433322 222333 222 222222334444444 44432 24455443222222334
Q ss_pred eEEEecC--CeEEE-EEcCceEEEEcCCCCcccccCCCCC--CCCEEEEc-cCCeEEE--EeCCeEEEEcC-CCC
Q 001851 161 KSMSWCG--ENICI-AIRKGYMILNATNGALSEVFPSGRI--GPPLVVSL-LSGELLL--GKENIGVFVDQ-NGK 226 (1004)
Q Consensus 161 ~~l~~~~--~~i~v-~~~~~y~lidl~~~~~~~L~~~~~~--~~p~i~~~-~~~E~Ll--~~~~~gvfv~~-~G~ 226 (1004)
-.|+... ..+.. +..+...|+|+.+|.-...|--+.. +.++-+.+ +.+-++. |.|...-|+|. .|+
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 4455443 23444 4458899999999988887764322 33443333 3455554 45555555553 443
No 196
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.82 E-value=4.5 Score=51.62 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=55.7
Q ss_pred CCCcEEEEE-EeCCEEEEEeCCCcEEEEcCCCCCCCCC------CCCccccccc-ccceeeeeecCCCCCceeEEEEecc
Q 001851 15 CSPKIDAVA-SYGLKILLGCSDGSLKIYSPGSSESDRS------PPSDYQSLRK-ESYELERTISGFSKKPILSMEVLAS 86 (1004)
Q Consensus 15 ~~~~I~ci~-~~~~~L~iGt~~G~l~~y~~~~~~~~~~------~~~~~~~l~~-~~~~~~~~~~~~~k~~I~qI~~l~~ 86 (1004)
.+..|+||. +-++++|+|+.||.||-+.-+...++.. .++.+ .+-. -++ +. ++.+.++.||.||.|...
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s-~ls~lvPs-~~-~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKS-VLSSLVPS-LL-SVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchh-HHHHhhhh-hh-cCCCCCCCcceeeEeccc
Confidence 356899999 3457999999999886544443333211 11111 0100 011 11 122345779999999999
Q ss_pred cCceeeeeC-c-eEEEeCCC
Q 001851 87 RQLLLSLSE-S-IAFHRLPN 104 (1004)
Q Consensus 87 ~~~ll~l~d-~-v~~~~L~~ 104 (1004)
.+++.++++ + |.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 999999998 5 99999854
No 197
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.44 E-value=16 Score=44.35 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=50.3
Q ss_pred cEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCccccccccccee-eeeecCCCCCceeEEEEecccC--ceee
Q 001851 18 KIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYEL-ERTISGFSKKPILSMEVLASRQ--LLLS 92 (1004)
Q Consensus 18 ~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~k~~I~qI~~l~~~~--~ll~ 92 (1004)
=|++++-. |+..+|||=+|..+.|...+..... .+.+ .+..++...++|+-++..|... +||+
T Consensus 453 lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~------------~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS------------DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT 520 (712)
T ss_pred hheeEEeccCCceEEEEEeccEEEEEEccCCeEEE------------eeeEeeccCccccCceeeeeEecCCCCCeEEEe
Confidence 35555444 7899999999999999987653210 0111 1111122233899999998664 6666
Q ss_pred eeCc-eEEEeCCCCccc
Q 001851 93 LSES-IAFHRLPNLETI 108 (1004)
Q Consensus 93 l~d~-v~~~~L~~l~~~ 108 (1004)
=+|. |.+|++.+-+.+
T Consensus 521 SnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLV 537 (712)
T ss_pred cCCCceEEEeccchhhh
Confidence 6675 999998554443
No 198
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=78.41 E-value=1e+02 Score=33.07 Aligned_cols=155 Identities=8% Similarity=0.201 Sum_probs=98.2
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
+.|=|++..- ++|.-|..|-++..|+++-.. ++. +.+ .+.+|..+...+..+++++.+
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk-----------------~la-~~k--~~~~Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGK-----------------QLA-TWK--TNSPVKRVDFSFGGNLILAST 112 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCc-----------------EEE-Eee--cCCeeEEEeeccCCcEEEEEe
Confidence 4676766653 689999999999999987532 111 111 266899999999999999999
Q ss_pred C---c----eEEEeCCCC-------ccccccc-CCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCC
Q 001851 95 E---S----IAFHRLPNL-------ETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPD 158 (1004)
Q Consensus 95 d---~----v~~~~L~~l-------~~~~~i~-~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d 158 (1004)
| | |.++++... +|...++ .-..++...+++....|+.+ .+.+|..|....|..++.-.+.- ..
T Consensus 113 D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h-~~ 191 (327)
T KOG0643|consen 113 DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH-SS 191 (327)
T ss_pred hhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh-cc
Confidence 8 2 899998643 2222221 12334445556555556666 67789999988665554433322 23
Q ss_pred CceEEEecCC--eEEEEEc-CceEEEEcCCCCccccc
Q 001851 159 TVKSMSWCGE--NICIAIR-KGYMILNATNGALSEVF 192 (1004)
Q Consensus 159 ~~~~l~~~~~--~i~v~~~-~~y~lidl~~~~~~~L~ 192 (1004)
.|..|++..+ +.+-|++ +.-.++|..+-+++.-+
T Consensus 192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 192 KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred ccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 6777877643 3333443 55778888776554433
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=78.41 E-value=3.3 Score=34.32 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHHHhc
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTG-SYEEAMEHFLAS 365 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~-~f~~A~~~f~~~ 365 (1004)
..-..++..|+|++|+..++..-. . +..-..++...|..++..| +|++|+..|.++
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~----~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIE----L-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH----H-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----c-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344567899999999999876311 1 1122346777799999999 799999999875
No 200
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.26 E-value=5 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 341 IHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 341 i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+....|..++..|+|++|..+|.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556799999999999999999874
No 201
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=77.78 E-value=60 Score=36.11 Aligned_cols=102 Identities=8% Similarity=0.160 Sum_probs=58.3
Q ss_pred eeEEEEecccCceeeeeCceEEEeCCCCccccccc-CCCCcEEEEecCCC-cEEEEE-ECCeEEEEEecCCCceeEeeee
Q 001851 78 ILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLT-KAKGANVYSWDDRR-GFLCFA-RQKRVCIFRHDGGRGFVEVKDF 154 (1004)
Q Consensus 78 I~qI~~l~~~~~ll~l~d~v~~~~L~~l~~~~~i~-~~kg~~~f~~~~~~-~~l~V~-~kkki~l~~~~~~~~f~~~kEi 154 (1004)
+.-|......+.+.++++.|.+|+.....|+.++. ..-.++++..++-. ..|+.+ ..+.|.||....+ ..++.+
T Consensus 150 ~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~---~Pl~KV 226 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA---SPLKKV 226 (433)
T ss_pred ccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC---Ccccee
Confidence 33344444445555555557777765544544331 11223344444432 456665 8899999997744 345556
Q ss_pred ecCCCceEEEecC-CeEEEEEcCceEEEE
Q 001851 155 GVPDTVKSMSWCG-ENICIAIRKGYMILN 182 (1004)
Q Consensus 155 ~l~d~~~~l~~~~-~~i~v~~~~~y~lid 182 (1004)
.+.-..-+|+|.. ...+++-...|.++-
T Consensus 227 i~~mRTN~IswnPeafnF~~a~ED~nlY~ 255 (433)
T KOG0268|consen 227 ILTMRTNTICWNPEAFNFVAANEDHNLYT 255 (433)
T ss_pred eeeccccceecCccccceeecccccccee
Confidence 6666777889984 456666666665553
No 202
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=77.65 E-value=22 Score=41.31 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccc---------------cCCChHhHHHHhcccC---CCCchhHH
Q 001851 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHT---------------QKFNPESIIEYLKPLC---GTDPMLVL 610 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~yL~~L~---~~~~~li~ 610 (1004)
+..++.+|...|++++|++++.++......++ .+.. ...+.+...++.+.++ +.+.++..
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~--~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~ 267 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE--EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQV 267 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHH
Confidence 56788899999999999988888775432211 0000 0001122233333332 24566777
Q ss_pred hhchhhhcc-Cccchhccccc---CCCChH--HHHHHHhhcCccchhhhHHHHHhcccCCCCcchHHHHHHHHHHHHHHh
Q 001851 611 EFSMLVLES-CPTQTIELFLS---GNIPAD--LVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDW 684 (1004)
Q Consensus 611 ~~~~wll~~-~p~~~i~if~~---~~l~~~--~vl~~L~~~~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~~~~~ 684 (1004)
.|+..++.. +++.|.+++.+ .+.++. .+...+...++.-....+|...... + .++.++-.+..+++..
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P-~~~~l~l~lgrl~~~~---- 341 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-G-DTPLLWSTLGQLLMKH---- 341 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHC----
Confidence 777777765 45666666644 123333 2333444445666788888887643 3 4677787788777753
Q ss_pred hhhhhhhcccCcccchHHHHHHHHHHhhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHH
Q 001851 685 YSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYV 752 (1004)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv 752 (1004)
+.+...+..|...++. -|...-+.+.+.++.++|++++|.+++=
T Consensus 342 ------------~~~~~A~~~le~al~~------------~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 342 ------------GEWQEASLAFRAALKQ------------RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred ------------CCHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223344444443332 2333333567888999999999987765
No 203
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=77.62 E-value=96 Score=32.43 Aligned_cols=169 Identities=14% Similarity=0.142 Sum_probs=90.1
Q ss_pred cEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceE-EEecCCeEEEEEc-CceEEEEcCCCCccccc-CC--C--CCC
Q 001851 127 GFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKS-MSWCGENICIAIR-KGYMILNATNGALSEVF-PS--G--RIG 198 (1004)
Q Consensus 127 ~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~-l~~~~~~i~v~~~-~~y~lidl~~~~~~~L~-~~--~--~~~ 198 (1004)
+.++++ ....|..+....|+ ...++.+++.+.. ....++.+++++. .....+|..+|....-. .. . ...
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~---~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGK---VLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSE---EEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CEEEEEcCCCEEEEEECCCCC---EEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 556665 56667666664443 3334444554333 3556888888886 45888999999764331 11 1 111
Q ss_pred CCEEEEccCCeEEEEe-CCeEEEEc-CCCCcccCcceeecCCC------------ceEEEeCCeEEEEcCCe--eEEEEc
Q 001851 199 PPLVVSLLSGELLLGK-ENIGVFVD-QNGKLLQADRICWSEAP------------IAVIIQKPYAIALLPRR--VEVRSL 262 (1004)
Q Consensus 199 ~p~i~~~~~~E~Ll~~-~~~gvfv~-~~G~~~~~~~i~w~~~P------------~~i~~~~PYll~~~~~~--ieV~~l 262 (1004)
.+....+.++.++++. +...+.+| .+|+.. ........+ ....+....+++...+. +.+ ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL--WKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEE--EEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEE--EEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 1222223355566655 56666777 567653 122222212 23344444777777544 555 77
Q ss_pred cCCCceeEEEeeCCccc-cccCCCeEEEEe-CCeEEEecccC
Q 001851 263 RVPYALIQTIVLQNVRH-LIPSSNAVVVAL-ENSIFGLFPVP 302 (1004)
Q Consensus 263 ~~~~~lvQti~l~~~~~-l~~~~~~v~vas-~~~i~~l~~~~ 302 (1004)
. ++..+-+........ ....++.+|+++ ++.|+++...+
T Consensus 191 ~-tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 191 A-TGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp T-TTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred C-CCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 5 454332333333332 345567777776 78888887653
No 204
>PF14762 HPS3_Mid: Hermansky-Pudlak syndrome 3, middle region
Probab=77.48 E-value=37 Score=38.45 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=100.2
Q ss_pred EEEeCCeEEEEcCCCCcccCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCc-------eeEEE--eeCCc----
Q 001851 211 LLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYA-------LIQTI--VLQNV---- 277 (1004)
Q Consensus 211 Ll~~~~~gvfv~~~G~~~~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~-------lvQti--~l~~~---- 277 (1004)
+++....|++++..+....-....+++....++...-|+-+++..++|=+.++-... -+.+. .+|++
T Consensus 96 ffS~~~~GyLY~i~~~~~lls~Y~yt~~~~~~~l~~~fLhaiT~~gLet~TlR~s~~~~~~~~~~id~t~~~cP~~s~~v 175 (374)
T PF14762_consen 96 FFSTPHQGYLYNISKPVELLSTYQYTAPVQQVVLTDQFLHAITSEGLETYTLRCSAAAARNEDPYIDTTLKACPPVSMPV 175 (374)
T ss_pred EEecCcceEEEEeeccceEEEEEecCccceEEEeecceeeeeeccccceEEEecchHHhhccCCccccccccCCCCCcch
Confidence 456677888888765432235677888878888888899999998888776641111 11111 13321
Q ss_pred -----------cccccCCCeEEEEe---------------CCeEEEecccChHHHHHHHHhcC-------------CHHH
Q 001851 278 -----------RHLIPSSNAVVVAL---------------ENSIFGLFPVPLGAQIVQLTASG-------------DFEE 318 (1004)
Q Consensus 278 -----------~~l~~~~~~v~vas---------------~~~i~~l~~~~~~~qi~~Ll~~~-------------~~ee 318 (1004)
+.++..++.+++-| .=.+|.+...|+.+-..++++.. ...|
T Consensus 176 c~lgl~~FigL~~v~~~~~hlILLtka~~~~~~~~s~~~~~W~LYiL~~~~~~~Ly~dm~e~A~~yk~~~~~~y~hLL~E 255 (374)
T PF14762_consen 176 CLLGLQPFIGLQAVCHFKNHLILLTKADSEDTEERSSSESSWNLYILNTPSPEQLYKDMVEYANSYKTASPQSYHHLLSE 255 (374)
T ss_pred HHhhhhhhcceeeEeecCCEEEEEEcCCCcccCCcccccCcceEEEEcCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 22233444444322 12588898888887777666422 1456
Q ss_pred HHHHHhhCC---CchhhhhhhhhHHHHH----HHHHHHHc--CCCHHHHHHHHHhcCCCHHHHHHhC
Q 001851 319 ALALCKLLP---PEDASLRAAKEGSIHI----RFAHYLFD--TGSYEEAMEHFLASQVDITYALSLY 376 (1004)
Q Consensus 319 Al~L~~~~~---~~~~~~~~~~~~~i~~----~~a~~lf~--~~~f~~A~~~f~~~~~dp~~vi~Lf 376 (1004)
|--|++..- ....+.+++.+....+ ..|+++-+ +++|..|+-+|..+++++.+||...
T Consensus 256 aHlLLRsaL~~~~~~~~~~~~eL~~l~reSca~LGD~~~r~~~~d~~lA~pYYkMS~l~i~~Vl~ri 322 (374)
T PF14762_consen 256 AHLLLRSALLDPSQEESEEKNELRELFRESCALLGDCYSRSDEKDYHLAAPYYKMSGLSISEVLNRI 322 (374)
T ss_pred HHHHHHHHhhhhhhcccchHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 666655421 0011111222333222 33666555 8899999999999999999999984
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=76.67 E-value=25 Score=38.32 Aligned_cols=107 Identities=15% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCceeEEEEecccCceeeeeCc----eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeE
Q 001851 75 KKPILSMEVLASRQLLLSLSES----IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVE 150 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d~----v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~ 150 (1004)
+..|..|...++...+.+..|. +-+|+|..++..+.+.....+..|.+|+.+.+++|.+ ++..+|-|....-+..
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vct-g~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCT-GKSRLYFWAPSGPRVV 396 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEc-CCceEEEEcCCCceEE
Confidence 4577888888888899999993 8999998887666666677888999999999988863 3344777764222211
Q ss_pred eeeeecCC-CceEEEec--CCeEEEEEcCceEEEEcC
Q 001851 151 VKDFGVPD-TVKSMSWC--GENICIAIRKGYMILNAT 184 (1004)
Q Consensus 151 ~kEi~l~d-~~~~l~~~--~~~i~v~~~~~y~lidl~ 184 (1004)
-++.++ .++.++|. |+.|.+..+..|++--+.
T Consensus 397 --~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a~ve 431 (447)
T KOG4497|consen 397 --GVPKKGFNIQKLQWLQPGEFIVLCGKDAFCVAIVE 431 (447)
T ss_pred --ecCCCCceeeeEEecCCCcEEEEEcCCceEEEEec
Confidence 122222 35778887 667777777777765443
No 206
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=76.32 E-value=29 Score=43.57 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=81.3
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
...|+|+-.. |.+|+.|++|+.|.+|.-.+......--+..+.-.-..|.......+ +..-|..+.-.|...+|+.+
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEe
Confidence 4578887444 57999999999999998774111000000000001224555444444 56789999999977777777
Q ss_pred e-Cc-eEEEeCCCCcccccccCC-CCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeee
Q 001851 94 S-ES-IAFHRLPNLETIAVLTKA-KGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF 154 (1004)
Q Consensus 94 ~-d~-v~~~~L~~l~~~~~i~~~-kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi 154 (1004)
+ |+ |.+|+..+|+.+..+... --+.-+++|+-...+|.- -.|+|.+|+.. .|...|.|
T Consensus 148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~---dw~i~k~I 209 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS---DWGIEKSI 209 (942)
T ss_pred cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc---cceeeEee
Confidence 6 54 999999888654332111 112235667776677775 56788888855 24444444
No 207
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.96 E-value=3.6 Score=30.25 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=18.5
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCC
Q 001851 21 AVASYGLKILLGCSDGSLKIYSPG 44 (1004)
Q Consensus 21 ci~~~~~~L~iGt~~G~l~~y~~~ 44 (1004)
+....++.||+|+.+|.|+.++..
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT
T ss_pred CCEEECCEEEEEcCCCEEEEEeCC
Confidence 457789999999999999998753
No 208
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=75.80 E-value=1.1e+02 Score=32.05 Aligned_cols=141 Identities=10% Similarity=0.140 Sum_probs=73.5
Q ss_pred EEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eEEE
Q 001851 23 ASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IAFH 100 (1004)
Q Consensus 23 ~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~~~ 100 (1004)
...++++|+++.+|.|+.++..... ..+.. . . ..++....+.. .+.+++.+ ++ +..+
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~--------------~~W~~--~---~-~~~~~~~~~~~-~~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGK--------------VLWRF--D---L-PGPISGAPVVD-GGRVYVGTSDGSLYAL 91 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSE--------------EEEEE--E---C-SSCGGSGEEEE-TTEEEEEETTSEEEEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCC--------------EEEEe--e---c-cccccceeeec-ccccccccceeeeEec
Confidence 3488999999999999999964321 11111 1 1 11222212333 35555554 45 7777
Q ss_pred eCCCCcccccc-----cC--CCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeecCC------------Cc
Q 001851 101 RLPNLETIAVL-----TK--AKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPD------------TV 160 (1004)
Q Consensus 101 ~L~~l~~~~~i-----~~--~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l~d------------~~ 160 (1004)
+..+-+.+-.. +. ........++ ...++++. ...|..+....|+. +.+..++. ..
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKL---LWKYPVGEPRGSSPISSFSDIN 166 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEE---EEEEESSTT-SS--EEEETTEE
T ss_pred ccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCCcE---EEEeecCCCCCCcceeeecccc
Confidence 76654433221 11 1111223333 34566665 67777777664532 22222222 12
Q ss_pred eEEEecCCeEEEEEcCc-eEEEEcCCCCcc
Q 001851 161 KSMSWCGENICIAIRKG-YMILNATNGALS 189 (1004)
Q Consensus 161 ~~l~~~~~~i~v~~~~~-y~lidl~~~~~~ 189 (1004)
..+.+.++.++++...+ ..-+|+.+|...
T Consensus 167 ~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 167 GSPVISDGRVYVSSGDGRVVAVDLATGEKL 196 (238)
T ss_dssp EEEECCTTEEEEECCTSSEEEEETTTTEEE
T ss_pred cceEEECCEEEEEcCCCeEEEEECCCCCEE
Confidence 33444567888888766 334499999744
No 209
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=75.62 E-value=41 Score=40.95 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCCC--------hHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhhccC
Q 001851 703 RKKLLSALESISGYN--------PEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAH 774 (1004)
Q Consensus 703 r~kLl~fL~~s~~Yd--------~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~~ 774 (1004)
..|+..||.. .|+ ..-+..++..+.+....+ .+--.|..++|+++++.+|+|+..|...|+-.. .
T Consensus 435 ~~k~~~Fl~n--dF~~~rwr~AAlKNAyaLlsk~Ry~~AAa-FFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e-~--- 507 (631)
T PF12234_consen 435 QQKMAKFLSN--DFTEPRWRTAALKNAYALLSKHRYEYAAA-FFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYE-G--- 507 (631)
T ss_pred cHHHHHHHhh--cCCChHHHHHHHHhHHHHHhcccHHHHHH-HHHhcccHHHHHHHHHHHccChhHHHHHHHHHc-C---
Confidence 4789999964 222 122333344445433333 223347899999999999999999999999643 2
Q ss_pred CCCCCCCCChHHHHHHHhcCC
Q 001851 775 QPSGKSSGNIYLTLLQIYLNP 795 (1004)
Q Consensus 775 ~~~~~~~~~l~~~Ll~~~l~~ 795 (1004)
.++..+..+++.++-|
T Consensus 508 -----d~gp~~~~ll~~~vLp 523 (631)
T PF12234_consen 508 -----DNGPVLKKLLEEHVLP 523 (631)
T ss_pred -----CCchHHHHHHHHhhhc
Confidence 1345677777655444
No 210
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=75.54 E-value=7.4 Score=41.77 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
.+...++++|+|++|+.+++.+.... + ............|..+|..++|++|...|.+ +|.+||+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~-------fi~~~P~~ 102 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-P-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDR-------FIRLNPTH 102 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHhCcCC
Confidence 44667889999999999998763111 1 1112334455679999999999999999976 67888876
No 211
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=75.14 E-value=8.9 Score=35.17 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 304 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
-.....+++.|++++|+..++....... ............|..++..++|++|+.+|.+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYP--KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3456678899999999999976521110 00112345667899999999999999999773
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=75.13 E-value=7.6 Score=42.15 Aligned_cols=65 Identities=11% Similarity=0.202 Sum_probs=44.8
Q ss_pred HHHHH-HhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 306 QIVQL-TASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 306 qi~~L-l~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
....| ++.|+|++|+..++.+.... .........+-..|..+|..|+|++|...|.. |+..||+-
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~-------vv~~yP~s 213 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS-------VVKNYPKS 213 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHHCCCC
Confidence 33344 67899999999887652100 00011234566779999999999999999866 67788765
No 213
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.09 E-value=1.1e+02 Score=39.46 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=100.6
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..|.++.... +.++|+|..|.|+.-+.+.. .+.++ +.....|.-+...|+.+.+++++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----------------~~eiv----g~vd~GI~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL----------------ELEIV----GNVDNGISAASWSPDEELLALIT 128 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc----------------ceeee----eeccCceEEEeecCCCcEEEEEe
Confidence 5788877764 68999999999988743321 22322 23356899999999989888888
Q ss_pred C-ceEEEeCCCCcccccccCCCCcEEEEecCCC-cEEEEEECCeEEEEEecCCCcee--E-eee-----eecCCCceEEE
Q 001851 95 E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRR-GFLCFARQKRVCIFRHDGGRGFV--E-VKD-----FGVPDTVKSMS 164 (1004)
Q Consensus 95 d-~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~-~~l~V~~kkki~l~~~~~~~~f~--~-~kE-----i~l~d~~~~l~ 164 (1004)
. +..++.=.+|+++.. +. .++=+... ..+-||=.|+=.=|+.+.|+.-. . .+| +...+.=++++
T Consensus 129 ~~~tll~mT~~f~~i~E----~~--L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 129 GRQTLLFMTKDFEPIAE----KP--LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred CCcEEEEEeccccchhc----cc--cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEE
Confidence 7 433333345666542 11 12222222 34666655665666665554211 1 112 22345556799
Q ss_pred ecCCe--EEE-----EEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEE-----eCCeEEEEcCCCC
Q 001851 165 WCGEN--ICI-----AIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG-----KENIGVFVDQNGK 226 (1004)
Q Consensus 165 ~~~~~--i~v-----~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~-----~~~~gvfv~~~G~ 226 (1004)
|+|+- +.| .+. +.+.++|-. |.....--+.....++..|.+.|-.+-+ .++..+|+-.+|-
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 99763 333 233 456677665 3211110011112455666666554322 2345678877773
No 214
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=75.03 E-value=2.1 Score=30.87 Aligned_cols=30 Identities=27% Similarity=0.518 Sum_probs=22.6
Q ss_pred cCCcCCCccCCcEEEEcCCCCeEEEecccCC
Q 001851 958 MCSLCSKKIGTSVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 958 ~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~ 988 (1004)
+|..|+++|......+...+ ..+|..|+.=
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~-~~~H~~Cf~C 30 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALG-KVWHPECFKC 30 (39)
T ss_pred CccccCCcccCCcEEEEeCC-ccccccCCCC
Confidence 59999999988644444555 6999999863
No 215
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=74.02 E-value=1.8e+02 Score=33.85 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=43.0
Q ss_pred CCCceEEEeCCe-EEEEcCCeeEEEEccCCCceeEEEeeCCccccccCCCeEEEEeCCeEEEecccChHHHHHHHHhcCC
Q 001851 237 EAPIAVIIQKPY-AIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGD 315 (1004)
Q Consensus 237 ~~P~~i~~~~PY-ll~~~~~~ieV~~l~~~~~lvQti~l~~~~~l~~~~~~v~vas~~~i~~l~~~~~~~qi~~Ll~~~~ 315 (1004)
..|..++|+.-= |+...++.+.+..-. +.. -++..++...+...-+++-+-|.+....|..+|-..+ ..+.-|.
T Consensus 260 ~~p~~~~WCG~dav~l~~~~~l~lvg~~--~~~-~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp~~~~--~if~igs 334 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSWEDELLLVGPD--GDS-ISFWYDGPVILVSEIDGVRIITSTSHEFLQRVPDSTE--NIFRIGS 334 (410)
T ss_pred CCCcEEEEECCCcEEEEeCCEEEEECCC--CCc-eEEeccCceEEeccCCceEEEeCCceEEEEECCHHHH--HHhcccC
Confidence 455666665432 222224444444332 211 1333344444556566677778888899998886543 5555444
Q ss_pred HHHHHHHHh
Q 001851 316 FEEALALCK 324 (1004)
Q Consensus 316 ~eeAl~L~~ 324 (1004)
-+=|--|++
T Consensus 335 ~~p~a~L~~ 343 (410)
T PF04841_consen 335 TSPGAILLD 343 (410)
T ss_pred CCccHHHHH
Confidence 333333333
No 216
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=74.00 E-value=90 Score=35.64 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.-...+...|++++|+.+++.....+. .........|..+...|+|++|.+.|.+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGD-----FAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 335566788888888888876532111 11233455567777888888888888763
No 217
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=73.40 E-value=0.76 Score=34.82 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=26.9
Q ss_pred cCCcCCCcc-CCcEEEEcCCCCeEEEecccCCch
Q 001851 958 MCSLCSKKI-GTSVFAVYPNGKTIVHFVCFRDSQ 990 (1004)
Q Consensus 958 ~C~vC~k~l-~~~~f~v~p~~~~v~H~~C~~~~~ 990 (1004)
.|++|.+++ ....+.+.+|| |++...|+....
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-HIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-CHHHHHHHHhhc
Confidence 499999999 34568889999 999999997654
No 218
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=73.35 E-value=4.1 Score=44.20 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=47.9
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc
Q 001851 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES 96 (1004)
Q Consensus 21 ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~ 96 (1004)
+++.|++-|.+|...|.++.|++..+.+.. ..++. ...+++.|.|........+|+.+||-
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~~------------~ttl~---~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNNEPPK------------CTTLT---HSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCCCCcc------------CceEE---eccccceeeeeeecccCcEEEEEeCC
Confidence 688889999999999999999998766431 12232 22457899999999999999888883
No 219
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=73.23 E-value=3.4 Score=35.94 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=37.5
Q ss_pred hcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHH
Q 001851 312 ASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITY 371 (1004)
Q Consensus 312 ~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~ 371 (1004)
++|+|++|+.+++.....+ +. ..-..+....|..+|..|+|++|+..+.+...+|..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-~~--~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~ 57 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-PT--NPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSN 57 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-CG--THHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCH
T ss_pred CCccHHHHHHHHHHHHHHC-CC--ChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCC
Confidence 4689999999998763111 10 001123333699999999999999999775555543
No 220
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=72.86 E-value=44 Score=36.79 Aligned_cols=147 Identities=11% Similarity=0.245 Sum_probs=84.2
Q ss_pred eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCcee-----eeeC-ceE
Q 001851 25 YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL-----SLSE-SIA 98 (1004)
Q Consensus 25 ~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll-----~l~d-~v~ 98 (1004)
..+.++.|++||+|..|++....... ...+.+.+..|-..+..=-..+++. +-++ .|.
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a----------------~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~ 146 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESA----------------RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV 146 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhh----------------heeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence 34789999999999999987543210 0111111122222222111112222 1122 277
Q ss_pred EEeCCCCcc-cccc--cCCCCcEEEEecCCCcEEEE-E-ECCeEEEEEecCCCc-eeEeeeeecCCCceEEEecCC----
Q 001851 99 FHRLPNLET-IAVL--TKAKGANVYSWDDRRGFLCF-A-RQKRVCIFRHDGGRG-FVEVKDFGVPDTVKSMSWCGE---- 168 (1004)
Q Consensus 99 ~~~L~~l~~-~~~i--~~~kg~~~f~~~~~~~~l~V-~-~kkki~l~~~~~~~~-f~~~kEi~l~d~~~~l~~~~~---- 168 (1004)
+|+...-+. +... ...-.++.+++.++...+.+ | +.+-+.+|....++. =....-|+....|..+.|.++
T Consensus 147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr 226 (376)
T KOG1188|consen 147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR 226 (376)
T ss_pred EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcce
Confidence 888654332 3222 23346788888877665554 4 667778888764321 011223555667889999863
Q ss_pred eEEEEEcCceEEEEcCCCC
Q 001851 169 NICIAIRKGYMILNATNGA 187 (1004)
Q Consensus 169 ~i~v~~~~~y~lidl~~~~ 187 (1004)
..|+.....|.++++..|.
T Consensus 227 I~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 227 IMCLTHMETFAIYELEDGS 245 (376)
T ss_pred EEEEEccCceeEEEccCCC
Confidence 3577777899999999886
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.81 E-value=13 Score=41.52 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=59.2
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
+.|+|+... +++||+|+..|.|..|++.... .+...+.++ ...|+.|...|...++..++
T Consensus 248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-----------------l~g~~~kg~-tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-----------------LLGCGLKGI-TGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred CcceeeeecCCCcEEEEecccchhheecccCce-----------------eeccccCCc-cCCcceEEEcCCCceEEeec
Confidence 467765544 6899999999999999987532 122223444 45899999999888888776
Q ss_pred -C-ceEEEeCCCCcccccccCCCCcEEEEe
Q 001851 95 -E-SIAFHRLPNLETIAVLTKAKGANVYSW 122 (1004)
Q Consensus 95 -d-~v~~~~L~~l~~~~~i~~~kg~~~f~~ 122 (1004)
| .|.+|++.+-+.++.+--.--.+++.+
T Consensus 310 LDRyvRIhD~ktrkll~kvYvKs~lt~il~ 339 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLHKVYVKSRLTFILL 339 (412)
T ss_pred cceeEEEeecccchhhhhhhhhccccEEEe
Confidence 5 499999877555544332223344444
No 222
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.75 E-value=2 Score=45.32 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=32.9
Q ss_pred EECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccCCchh-----hhhhcc
Q 001851 952 KITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQS-----MKAVAK 997 (1004)
Q Consensus 952 ~i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~~~-----~~~~~~ 997 (1004)
+-+.++.|++|+++=..+ ++.=||| |++.|.|+...-. +||.=+
T Consensus 235 ~~t~~~~C~~Cg~~PtiP-~~~~~C~-HiyCY~Ci~ts~~~~asf~Cp~Cg 283 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP-HVIGKCG-HIYCYYCIATSRLWDASFTCPLCG 283 (298)
T ss_pred cccCCceeeccCCCCCCC-eeecccc-ceeehhhhhhhhcchhhcccCccC
Confidence 345689999999974433 5558999 9999999987654 777543
No 223
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=72.47 E-value=63 Score=40.54 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChhhHHhhhcCCCcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcc
Q 001851 507 LDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEES 576 (1004)
Q Consensus 507 vDT~Ll~~yl~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~ 576 (1004)
+.++|+..|.+.++.+....++..-..- .---|..|+.-|..+|+.++|++++.+.....
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~----------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRK----------NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCC----------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5678999999988755554444310000 11248999999999999999999999976543
No 224
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=72.20 E-value=1.6 Score=34.07 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=27.2
Q ss_pred CCCcCCcCCCccCCcEEEEcCCCCeE-EEecccCCch---hhhhh
Q 001851 955 SDSMCSLCSKKIGTSVFAVYPNGKTI-VHFVCFRDSQ---SMKAV 995 (1004)
Q Consensus 955 ~~~~C~vC~k~l~~~~f~v~p~~~~v-~H~~C~~~~~---~~~~~ 995 (1004)
++..|.+|...... ++++||| |. +...|..+.. ..||+
T Consensus 1 ~~~~C~iC~~~~~~--~~~~pCg-H~~~C~~C~~~~~~~~~~CP~ 42 (50)
T PF13920_consen 1 EDEECPICFENPRD--VVLLPCG-HLCFCEECAERLLKRKKKCPI 42 (50)
T ss_dssp -HSB-TTTSSSBSS--EEEETTC-EEEEEHHHHHHHHHTTSBBTT
T ss_pred CcCCCccCCccCCc--eEEeCCC-ChHHHHHHhHHhcccCCCCCc
Confidence 35689999998654 5668999 99 9999987653 44554
No 225
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=72.15 E-value=1.5e+02 Score=33.37 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=91.8
Q ss_pred CCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCC-----------CCCcccccccccceeeeeecCCCCCceeEE--
Q 001851 16 SPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRS-----------PPSDYQSLRKESYELERTISGFSKKPILSM-- 81 (1004)
Q Consensus 16 ~~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI-- 81 (1004)
...|+|+..-| +.||-|+.|++|.+|+.....-... +-++---|++..|... ++.+.+.
T Consensus 247 T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t-------~~~~~~~se 319 (480)
T KOG0271|consen 247 TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT-------GRKPKSFSE 319 (480)
T ss_pred ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc-------cccCCChHH
Confidence 56799998775 6899999999999999765321000 0000000111112111 1111111
Q ss_pred ----------EEec-ccCceeeeeCc--eEEEeCCCC-cccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCC
Q 001851 82 ----------EVLA-SRQLLLSLSES--IAFHRLPNL-ETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGG 145 (1004)
Q Consensus 82 ----------~~l~-~~~~ll~l~d~--v~~~~L~~l-~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~ 145 (1004)
.+.+ ..+.|+.-+|. +.+|+=... +++..+ ...+-++.+.++++...|+-| -.|.|.|+....|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 0011 22678888884 666663222 233322 223456778888877667766 6889999987755
Q ss_pred CceeEeeeeecCCCceEEEecCC-eEEEEEcC--ceEEEEcCCCCccc
Q 001851 146 RGFVEVKDFGVPDTVKSMSWCGE-NICIAIRK--GYMILNATNGALSE 190 (1004)
Q Consensus 146 ~~f~~~kEi~l~d~~~~l~~~~~-~i~v~~~~--~y~lidl~~~~~~~ 190 (1004)
.....+|- --+.+-.++|..| .+.|...+ -..+.++.+.....
T Consensus 400 k~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 400 KFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred chhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 32122221 1245677899865 67766653 35667887765433
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=71.91 E-value=6.3 Score=32.96 Aligned_cols=52 Identities=29% Similarity=0.419 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.++.+++|++|+..++..-..+. .--..+...|..++..|+|++|+..|..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-----DDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-----ccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 46889999999999976421110 11245667899999999999999999874
No 227
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=71.85 E-value=58 Score=35.16 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=78.3
Q ss_pred CcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 17 PKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 17 ~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
+.|+++..- |..++=|..||.+.+|+++..+.-+.+ ...-+..-...+++.+.+|-.|+...--|-..=+++-
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s----~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS----GLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhc----cceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 456654433 468899999999999999875532211 0011111112233444455555555444432222221
Q ss_pred e--C-ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEec----
Q 001851 94 S--E-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC---- 166 (1004)
Q Consensus 94 ~--d-~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~---- 166 (1004)
+ | .++||+-.+ .+....|.+++.+-+-+|.
T Consensus 120 sSFDhtlKVWDtnT-------------------------------------------lQ~a~~F~me~~VYshamSp~a~ 156 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNT-------------------------------------------LQEAVDFKMEGKVYSHAMSPMAM 156 (397)
T ss_pred ccccceEEEeeccc-------------------------------------------ceeeEEeecCceeehhhcChhhh
Confidence 1 1 144443222 2222233344444333332
Q ss_pred -CCeEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEeC
Q 001851 167 -GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKE 215 (1004)
Q Consensus 167 -~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~~ 215 (1004)
...|.+|++ -+..+-|+.+|.-.-.+.-.+...-.+-|.+..|++|+.+
T Consensus 157 sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 157 SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEec
Confidence 235667776 4677889988876655543333333456678888888643
No 228
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=71.78 E-value=5.2 Score=31.49 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=30.5
Q ss_pred EECCCCcCCcCCCcc---CCcEEEEcCCCCeEEEecccCCchhhhh
Q 001851 952 KITSDSMCSLCSKKI---GTSVFAVYPNGKTIVHFVCFRDSQSMKA 994 (1004)
Q Consensus 952 ~i~~~~~C~vC~k~l---~~~~f~v~p~~~~v~H~~C~~~~~~~~~ 994 (1004)
.+...+.|.+|++.| +...+.---|+ .++|..|.......|+
T Consensus 7 ~~~~~~~C~~C~~~i~g~~~~g~~C~~C~-~~~H~~C~~~~~~~C~ 51 (53)
T PF00130_consen 7 TFSKPTYCDVCGKFIWGLGKQGYRCSWCG-LVCHKKCLSKVPPSCG 51 (53)
T ss_dssp ESSSTEB-TTSSSBECSSSSCEEEETTTT--EEETTGGCTSSSBSS
T ss_pred cCCCCCCCcccCcccCCCCCCeEEECCCC-ChHhhhhhhhcCCCCC
Confidence 345678999999999 33456656788 8999999988766654
No 229
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=71.61 E-value=1.8e+02 Score=32.64 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=116.9
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
-.|+|+... |.+|.-|.=+|.|.+|....... .+.+- ..-.-|.-+.-=|...+|+.=+
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--------------~~~~~-----~e~~dieWl~WHp~a~illAG~ 167 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--------------QWKLD-----QEVEDIEWLKWHPRAHILLAGS 167 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCce--------------EEEee-----cccCceEEEEecccccEEEeec
Confidence 457766554 35788899999999998654211 11110 0123444454445444444434
Q ss_pred C-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEee--eeecCCCceEEEecCC
Q 001851 95 E-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVK--DFGVPDTVKSMSWCGE 168 (1004)
Q Consensus 95 d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~k--Ei~l~d~~~~l~~~~~ 168 (1004)
+ | +..|.+++-.....+ ...-.|++=.+-++..+++.+ ....|.+|-...+.....++ | .++.++.++.-.+.
T Consensus 168 ~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~ 246 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGS 246 (399)
T ss_pred CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc-cCcCCccccccccc
Confidence 3 5 999998873211111 223345554454444456655 67778777766443222222 2 22333333333333
Q ss_pred eEEEEEc-CceEEEEcCCCCcccccC--------CCCCCCCEEEEccCC-eE-EEE---eCCeEEEEcCCCCcccCccee
Q 001851 169 NICIAIR-KGYMILNATNGALSEVFP--------SGRIGPPLVVSLLSG-EL-LLG---KENIGVFVDQNGKLLQADRIC 234 (1004)
Q Consensus 169 ~i~v~~~-~~y~lidl~~~~~~~L~~--------~~~~~~p~i~~~~~~-E~-Ll~---~~~~gvfv~~~G~~~~~~~i~ 234 (1004)
.+.-|++ ..+++++..+|.+...+. .......++..++.- .+ |.+ .|....++|..-... |...+
T Consensus 247 ~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~ 325 (399)
T KOG0296|consen 247 TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-RHICE 325 (399)
T ss_pred eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-heecc
Confidence 4444444 335555555554433322 211111111111111 11 111 244445556544333 33444
Q ss_pred ecCCCceEEEeC-CeEEEEcC-CeeEEEEccCCCceeEEEe
Q 001851 235 WSEAPIAVIIQK-PYAIALLP-RRVEVRSLRVPYALIQTIV 273 (1004)
Q Consensus 235 w~~~P~~i~~~~-PYll~~~~-~~ieV~~l~~~~~lvQti~ 273 (1004)
-+.....+.|.. +||++-+. +.|..++.+ ++.+..+..
T Consensus 326 he~~V~~l~w~~t~~l~t~c~~g~v~~wDaR-tG~l~~~y~ 365 (399)
T KOG0296|consen 326 HEDGVTKLKWLNTDYLLTACANGKVRQWDAR-TGQLKFTYT 365 (399)
T ss_pred CCCceEEEEEcCcchheeeccCceEEeeecc-ccceEEEEe
Confidence 444455566665 99999887 567788886 677766654
No 230
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=71.57 E-value=2.4e+02 Score=34.14 Aligned_cols=263 Identities=11% Similarity=0.097 Sum_probs=149.0
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-
Q 001851 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS- 94 (1004)
Q Consensus 16 ~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~- 94 (1004)
...+.|...+++++.-|+.+++|..|+... .+.+.....+ +...|-.+......++|+.-+
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~-----------------~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS~ 269 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNN-----------------GYLILTRLVG-HFGGVWGLAFPSGGDKLVSGST 269 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeeccc-----------------ceEEEeeccC-CCCCceeEEEecCCCEEEEEec
Confidence 457889888999999999999999998653 2233222333 467899999888778888777
Q ss_pred Cc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecCCeEEE
Q 001851 95 ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICI 172 (1004)
Q Consensus 95 d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~~i~v 172 (1004)
|. +.+|+..+-+-...+. ...-+.-+++.....++-+ ....|.+|.+..+.....++. -.+.|.++...++.++.
T Consensus 270 D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvs 346 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVS 346 (537)
T ss_pred CCcEEeEecCCCcEEEEec-CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEE
Confidence 64 9999976655444432 2223334444443333333 556778888875432223233 56789999999999999
Q ss_pred EEcCc-eEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEE--EeCCeEEEEcCCCCcccCcceeecCCC---ceEEEeC
Q 001851 173 AIRKG-YMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL--GKENIGVFVDQNGKLLQADRICWSEAP---IAVIIQK 246 (1004)
Q Consensus 173 ~~~~~-y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll--~~~~~gvfv~~~G~~~~~~~i~w~~~P---~~i~~~~ 246 (1004)
|+-.+ .-+.|+.+++...-+... ..+-.-+.++..+.++ ..|.....-|..+.. +........+ ..+.+..
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~~~ 423 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLLRD 423 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCC-cceEEEEEecCcceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccccc
Confidence 98876 445688776543333221 1111111233313333 245433344443320 1111121111 2344455
Q ss_pred CeEEEEcC-CeeEEEEccCCCceeEEEeeCC---ccccccCCCeEEEEeCC---eEEEecccCh
Q 001851 247 PYAIALLP-RRVEVRSLRVPYALIQTIVLQN---VRHLIPSSNAVVVALEN---SIFGLFPVPL 303 (1004)
Q Consensus 247 PYll~~~~-~~ieV~~l~~~~~lvQti~l~~---~~~l~~~~~~v~vas~~---~i~~l~~~~~ 303 (1004)
-+++.-.- +.|.+.+.. .+..++++.-+. ...+......++.++.. .+|-+.....
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~-~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAE-EGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ceeEeccccccEEEeecc-cCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 56665543 679999986 588888887742 12222223445555443 3454444443
No 231
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.51 E-value=8.5 Score=41.70 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=38.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc-CCCH
Q 001851 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS-QVDI 369 (1004)
Q Consensus 306 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~-~~dp 369 (1004)
+...+.+-|+|+.|+.=|++.-..|. ...+-+.+.|..++..|+|++|.+.|.++ ++||
T Consensus 121 RAAAy~~Lg~~~~AVkDce~Al~iDp-----~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 121 RAAAYSKLGEYEDAVKDCESALSIDP-----HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 34455555666666655554321111 23345677899999999999999999886 4454
No 232
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=71.38 E-value=9.6 Score=37.10 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=24.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001851 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (1004)
Q Consensus 308 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (1004)
..++..|++++|+..++...... .+.........+.|..++..|+|++|+..+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34555566666665555432110 00001112233445555555555555555544
No 233
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=71.23 E-value=3.2e+02 Score=35.52 Aligned_cols=233 Identities=16% Similarity=0.224 Sum_probs=119.6
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
.+|.++.... +.|++++.+|.|..+..+.+... ...+.+.. + ...|..+.-.|+.++|++++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~------------~~~E~VG~---v-d~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDE------------DEIEIVGS---V-DSGILAASWSPDEELLALVT 139 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC------------ceeEEEEE---E-cCcEEEEEECCCcCEEEEEe
Confidence 4677766554 57999999999999965543221 12333332 2 55899999999999999988
Q ss_pred C-c-eEEEeCCCCcccccccCCCCcEEEEecCC-CcEEEEEECCeEEEEEecCCCcee-Eeee----------eecCCCc
Q 001851 95 E-S-IAFHRLPNLETIAVLTKAKGANVYSWDDR-RGFLCFARQKRVCIFRHDGGRGFV-EVKD----------FGVPDTV 160 (1004)
Q Consensus 95 d-~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~-~~~l~V~~kkki~l~~~~~~~~f~-~~kE----------i~l~d~~ 160 (1004)
+ + +.+.. .+|+++...+-.. -+.+ ...+-||=+||=.-|+.+.|+.-. ..++ ++..|.-
T Consensus 140 ~~~~l~~mt-~~fd~i~E~~l~~------~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~ 212 (928)
T PF04762_consen 140 GEGNLLLMT-RDFDPISEVPLDS------DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR 212 (928)
T ss_pred CCCEEEEEe-ccceEEEEeecCc------cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc
Confidence 6 4 44433 4677665322110 0111 124667755555555555443210 0111 2234566
Q ss_pred eEEEecCCe--EEEEEc---Cc----eEEEEcCCCCcccccCCCC---CCCCEEEEccCCeEEEEeC-----CeEEEEcC
Q 001851 161 KSMSWCGEN--ICIAIR---KG----YMILNATNGALSEVFPSGR---IGPPLVVSLLSGELLLGKE-----NIGVFVDQ 223 (1004)
Q Consensus 161 ~~l~~~~~~--i~v~~~---~~----y~lidl~~~~~~~L~~~~~---~~~p~i~~~~~~E~Ll~~~-----~~gvfv~~ 223 (1004)
..|+|+||- ++|.+- .+ +.++|-. |. |..++. ...+.+.|-+.|.++-+.. ...+|+-.
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~---L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE---LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce---EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec
Confidence 789999863 333332 12 2222222 21 111111 1133455666666654322 34567777
Q ss_pred CCCcccCcceeec---CCCceEEEe-CCeEEE-EcCCeeEEEEccCCCc--eeEEEeeCCc
Q 001851 224 NGKLLQADRICWS---EAPIAVIIQ-KPYAIA-LLPRRVEVRSLRVPYA--LIQTIVLQNV 277 (1004)
Q Consensus 224 ~G~~~~~~~i~w~---~~P~~i~~~-~PYll~-~~~~~ieV~~l~~~~~--lvQti~l~~~ 277 (1004)
+|-+=...++.|. .....+.|. .--|++ ...+.|+++...| .+ +-|.+.++..
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N-YHWYLKqei~~~~~ 348 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN-YHWYLKQEIRFSSS 348 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeC-CEEEEEEEEEccCC
Confidence 7743211222220 011122222 122333 2356688888865 53 5688877643
No 234
>KOG4328 consensus WD40 protein [Function unknown]
Probab=71.23 E-value=72 Score=36.56 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=92.6
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCce-eeee-Cc-eEEEeCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL-LSLS-ES-IAFHRLP 103 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~l-l~l~-d~-v~~~~L~ 103 (1004)
..+++|++-|.+.++++.-..+ .|... ..++++|..|.+=|-..-+ ++.+ |+ +.+|++.
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s--------------~~~~~----~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGS--------------EYENL----RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred ccEEEeecccceEEEEeecCCc--------------cchhh----hhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 5789999999888887665332 12222 1467799999999977544 4443 44 8999997
Q ss_pred CCcc-----cccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecC-CCceeEeeeeecCC------CceEEEec--CC
Q 001851 104 NLET-----IAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDG-GRGFVEVKDFGVPD------TVKSMSWC--GE 168 (1004)
Q Consensus 104 ~l~~-----~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~-~~~f~~~kEi~l~d------~~~~l~~~--~~ 168 (1004)
.+.. +..+...+.|+..++++..+.|+-. .+..|.+|..+. +..+....+|.-+. .+---.|. .+
T Consensus 354 ~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 354 QLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred hhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 7633 3445667788888888888875443 678899998631 11222223332221 11112344 34
Q ss_pred eEEEEE-cCceEEEEcCCCC-cccccCC
Q 001851 169 NICIAI-RKGYMILNATNGA-LSEVFPS 194 (1004)
Q Consensus 169 ~i~v~~-~~~y~lidl~~~~-~~~L~~~ 194 (1004)
.|++|. .+...++|-+.|+ +.++..+
T Consensus 434 li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 434 LIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred EEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 566664 4777788877777 4555443
No 235
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=70.99 E-value=82 Score=35.92 Aligned_cols=145 Identities=12% Similarity=0.193 Sum_probs=88.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc-CceeeeeC-c-eEEEeCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR-QLLLSLSE-S-IAFHRLP 103 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~-~~ll~l~d-~-v~~~~L~ 103 (1004)
.+|+-|.++|.+..|++...+... .....+..-..+...|..+..-+.. +++..++| + +.++++.
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 478999999999999998765420 0011111222346678887777766 45567777 4 9999986
Q ss_pred C--Ccccccc-cCCCCcEEEEecCCCcE-EEEE-ECCeEEEEEecCCCceeEeeee-ecCCCceEEEecC--CeEEEEEc
Q 001851 104 N--LETIAVL-TKAKGANVYSWDDRRGF-LCFA-RQKRVCIFRHDGGRGFVEVKDF-GVPDTVKSMSWCG--ENICIAIR 175 (1004)
Q Consensus 104 ~--l~~~~~i-~~~kg~~~f~~~~~~~~-l~V~-~kkki~l~~~~~~~~f~~~kEi-~l~d~~~~l~~~~--~~i~v~~~ 175 (1004)
+ .++...+ .....++++++++-.+. |+-+ +.++|.||....-+. .+..+ .-.+.+..+.|.- ..|...+.
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecc
Confidence 3 3333332 22567788888887665 4444 589999998774211 22222 2346788899983 34443332
Q ss_pred --CceEEEEcCC
Q 001851 176 --KGYMILNATN 185 (1004)
Q Consensus 176 --~~y~lidl~~ 185 (1004)
+...+-|+..
T Consensus 337 ~D~rl~vWDls~ 348 (422)
T KOG0264|consen 337 TDRRLNVWDLSR 348 (422)
T ss_pred cCCcEEEEeccc
Confidence 4466667754
No 236
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.95 E-value=40 Score=42.55 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCceeEEEEeccc-Cceeee-eCc-eEEEe
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKPILSMEVLASR-QLLLSL-SES-IAFHR 101 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-k~~I~qI~~l~~~-~~ll~l-~d~-v~~~~ 101 (1004)
|+-+..|..||.|.+|+..-.... .++...+.++ ..+|..+.+-+.. .-|+.- +|| |.+++
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~d---------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPD---------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CceEEEeecCCceEEeecccCCcc---------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 688999999999999997643321 1122223232 3468888877744 335544 356 99999
Q ss_pred CCC-C-cccccccCCC--C--cEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeee---eec--CCCceEEEecCC--
Q 001851 102 LPN-L-ETIAVLTKAK--G--ANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKD---FGV--PDTVKSMSWCGE-- 168 (1004)
Q Consensus 102 L~~-l-~~~~~i~~~k--g--~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kE---i~l--~d~~~~l~~~~~-- 168 (1004)
+.. . +...++.... | .++..+.+....|+-|..+.|.||... |++...+|. |.- ...+.+++|.--
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH
Confidence 854 2 1111221111 5 778888888888888877999999987 433333332 111 134567777643
Q ss_pred eEEEEEc
Q 001851 169 NICIAIR 175 (1004)
Q Consensus 169 ~i~v~~~ 175 (1004)
.+.+|+.
T Consensus 1365 llAaG~~ 1371 (1387)
T KOG1517|consen 1365 LLAAGSA 1371 (1387)
T ss_pred hhhhccC
Confidence 3444543
No 237
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=70.88 E-value=32 Score=42.23 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=63.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCce-eeeeCc-eEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL-LSLSES-IAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~l-l~l~d~-v~~~~L~ 103 (1004)
|.+||=|..+|++..|.+.... +.+-. --..+|..|.+.|+.+.. +++.|+ +.+..++
T Consensus 263 G~~LlSGG~E~VLv~Wq~~T~~--------------kqfLP------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 263 GAYLLSGGREGVLVLWQLETGK--------------KQFLP------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred CceEeecccceEEEEEeecCCC--------------ccccc------ccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 5677777777777777655321 11111 115699999999998655 566675 8888887
Q ss_pred CCcccccccCCCCc------------EEEEecCCCcEEEE-EECCeEEEEEecC
Q 001851 104 NLETIAVLTKAKGA------------NVYSWDDRRGFLCF-ARQKRVCIFRHDG 144 (1004)
Q Consensus 104 ~l~~~~~i~~~kg~------------~~f~~~~~~~~l~V-~~kkki~l~~~~~ 144 (1004)
+++...++...+.+ +.+++|+..+.++. +....|++|..-.
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 77544444333333 45788885555444 5677899998753
No 238
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=70.77 E-value=1.4 Score=32.78 Aligned_cols=30 Identities=17% Similarity=0.491 Sum_probs=23.5
Q ss_pred cCCcCCCccCCcEEEEcCCCCeEEEecccCCc
Q 001851 958 MCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDS 989 (1004)
Q Consensus 958 ~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~ 989 (1004)
.|++|...+. ..+.+.|+| |.+|..|+...
T Consensus 1 ~C~iC~~~~~-~~~~~~~C~-H~~c~~C~~~~ 30 (45)
T cd00162 1 ECPICLEEFR-EPVVLLPCG-HVFCRSCIDKW 30 (45)
T ss_pred CCCcCchhhh-CceEecCCC-ChhcHHHHHHH
Confidence 4999999983 445546799 99999999743
No 239
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=70.63 E-value=42 Score=42.06 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=79.2
Q ss_pred CCCcE--EEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 15 CSPKI--DAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 15 ~~~~I--~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
+|..| +|+....++|++|+.||.++.|.++......+ ..+..+|++.+..+. + |+.+ ...-+++
T Consensus 582 iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls-d~Kk~~lGt~P~~Lr-~---f~sk---------~~t~vfa 647 (1096)
T KOG1897|consen 582 IPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS-DRKKVTLGTQPISLR-T---FSSK---------SRTAVFA 647 (1096)
T ss_pred cchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEc-cccccccCCCCcEEE-E---EeeC---------CceEEEE
Confidence 35555 34555567999999999999999886554221 112334555554432 2 2111 2356677
Q ss_pred eeCc-eEEEeCCCCcccccccCCCCcEEEEe---cCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCC
Q 001851 93 LSES-IAFHRLPNLETIAVLTKAKGANVYSW---DDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE 168 (1004)
Q Consensus 93 l~d~-v~~~~L~~l~~~~~i~~~kg~~~f~~---~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~ 168 (1004)
++|. ..+|.-. -+.+.+--..|-+...|- +--+..++.+.+..+.+..+++=.... .+.+++.+.|+-+++.+.
T Consensus 648 ~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~-irtvpl~~~prrI~~q~~ 725 (1096)
T KOG1897|consen 648 LSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLH-IRTVPLGESPRRICYQES 725 (1096)
T ss_pred eCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcc-eeeecCCCChhheEeccc
Confidence 7784 2222211 111111111122222222 222346888899999999987411111 234888899999998876
Q ss_pred eEEEE
Q 001851 169 NICIA 173 (1004)
Q Consensus 169 ~i~v~ 173 (1004)
.++++
T Consensus 726 sl~~~ 730 (1096)
T KOG1897|consen 726 SLTFG 730 (1096)
T ss_pred ceEEE
Confidence 66655
No 240
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.45 E-value=45 Score=42.28 Aligned_cols=157 Identities=21% Similarity=0.318 Sum_probs=94.4
Q ss_pred CCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccC----
Q 001851 16 SPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ---- 88 (1004)
Q Consensus 16 ~~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~---- 88 (1004)
++.|..++.. ++.|.=|.++|.|++|++..-.+. +..- +..+..+|..+....
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--------------~~~~------~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--------------FTPG------SQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--------------CCCC------CCCCcccceEeccchhhhH
Confidence 5678777776 467899999999999999874332 1110 123555666665432
Q ss_pred ceeeeeC-c-eEEEeCCCCcccccccCCCC---cEEEEecCCC-cEEEEEECC-eE-EEEEecCCCce--eEeeeeec-C
Q 001851 89 LLLSLSE-S-IAFHRLPNLETIAVLTKAKG---ANVYSWDDRR-GFLCFARQK-RV-CIFRHDGGRGF--VEVKDFGV-P 157 (1004)
Q Consensus 89 ~ll~l~d-~-v~~~~L~~l~~~~~i~~~kg---~~~f~~~~~~-~~l~V~~kk-ki-~l~~~~~~~~f--~~~kEi~l-~ 157 (1004)
+|...+. + ..+|+|..-+++-.+...-+ |+.++++++. .+|+++... +. .|--|+ -| | ...|++.. .
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD-lR-~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD-LR-FASSPLKILEGHQ 253 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec-cc-ccCCchhhhcccc
Confidence 2222333 3 89999876566654444444 7888998876 567777433 22 233344 11 2 12344422 3
Q ss_pred CCceEEEecC--CeEEEEEcC--ceEEEEcCCCCcccccCC
Q 001851 158 DTVKSMSWCG--ENICIAIRK--GYMILNATNGALSEVFPS 194 (1004)
Q Consensus 158 d~~~~l~~~~--~~i~v~~~~--~y~lidl~~~~~~~L~~~ 194 (1004)
-.+.+|.|+. +.+.+.+.+ ....-|.+||++..=+|.
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 4688999993 466666654 455557777776655554
No 241
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=69.82 E-value=11 Score=26.88 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.2
Q ss_pred cccCCCCcEEEEEEeC--CEEEEEeCCCcEEEEc
Q 001851 11 LISNCSPKIDAVASYG--LKILLGCSDGSLKIYS 42 (1004)
Q Consensus 11 l~~~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~ 42 (1004)
.+..-...|+|++... +.|+.|+.||.|.+|+
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3455567899998885 6999999999999985
No 242
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=69.77 E-value=1.2e+02 Score=34.60 Aligned_cols=192 Identities=11% Similarity=0.121 Sum_probs=109.3
Q ss_pred CCcEEEEEEeC----CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCcee
Q 001851 16 SPKIDAVASYG----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLL 91 (1004)
Q Consensus 16 ~~~I~ci~~~~----~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll 91 (1004)
..+|.|++.|. ..|.-|..||++.+|..+.... ..++.+ +...|..+..=|...+|.
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~------------------l~~l~g-H~~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP------------------LQDLEG-HLARVSRVAFHPSGKFLG 277 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCcc------------------hhhhhc-chhhheeeeecCCCceee
Confidence 56788998884 3899999999999999875321 112222 346888888899988888
Q ss_pred eee-Cc-eEEEeCCCCc-ccccccCCCCcEEEEecCCCcEEEEEECCeE-EEEEecCCCceeEeeeeecCCCceEEEecC
Q 001851 92 SLS-ES-IAFHRLPNLE-TIAVLTKAKGANVYSWDDRRGFLCFARQKRV-CIFRHDGGRGFVEVKDFGVPDTVKSMSWCG 167 (1004)
Q Consensus 92 ~l~-d~-v~~~~L~~l~-~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki-~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~ 167 (1004)
+-| |. -.+|++.+-. ....-...||+..+++..+...++-+.-..+ .++....|+....+.. -..+|.+++|..
T Consensus 278 TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g--H~k~I~~V~fsP 355 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG--HIKEILSVAFSP 355 (459)
T ss_pred ecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc--cccceeeEeECC
Confidence 755 63 6778876532 2233456788888888876554444332222 3444433332111111 134677888874
Q ss_pred C--eEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEcc-CCeEEE--EeCCeEEEE-cCCCCcc
Q 001851 168 E--NICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLL-SGELLL--GKENIGVFV-DQNGKLL 228 (1004)
Q Consensus 168 ~--~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~-~~E~Ll--~~~~~gvfv-~~~G~~~ 228 (1004)
| .|.-|.. +...+-|+......-..|-..+-..-|+..+ .+.||+ ++|+..=.. +..+.++
T Consensus 356 NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 356 NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 3 3444433 3455667766554333332221112233333 577877 366654333 3344443
No 243
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=69.42 E-value=5.9 Score=33.69 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=37.5
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhh-h-hhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLR-A-AKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~-~-~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
-+...|+|++|+..++..-.--.... + ...-......|..+...|+|++|+++|.++
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45688999999888876421100011 1 123445566799999999999999999875
No 244
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.25 E-value=13 Score=46.57 Aligned_cols=54 Identities=22% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcC-CCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCC
Q 001851 703 RKKLLSALESIS-GYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCV 757 (1004)
Q Consensus 703 r~kLl~fL~~s~-~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D 757 (1004)
+.-...+|+..+ .-+.+.+-..+.....+.+.++||..-|+|++||+++.. +.|
T Consensus 478 ~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~-l~d 532 (877)
T KOG2063|consen 478 PGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRD-LVD 532 (877)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHH-Hhc
Confidence 345566777655 446666666666678899999999999999999999994 444
No 245
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=69.15 E-value=94 Score=39.08 Aligned_cols=93 Identities=13% Similarity=0.280 Sum_probs=54.0
Q ss_pred cCceeeeeC-ceEEEeC--CCCcccc----cccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeee-e-ec
Q 001851 87 RQLLLSLSE-SIAFHRL--PNLETIA----VLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD-F-GV 156 (1004)
Q Consensus 87 ~~~ll~l~d-~v~~~~L--~~l~~~~----~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kE-i-~l 156 (1004)
.+.++-+++ ++.-++. ..-+.+. .-.....-+|++.. ..|.|||| .++.|.||.-. |. .-|. + .+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~-g~---~AKT~lp~l 617 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDRL-GK---RAKTALPGL 617 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec-CCceEEEEeCCCcEEeeccc-ch---hhhhcCCCC
Confidence 356777777 3655553 1111110 11112233455554 35889998 67899999743 21 2232 3 45
Q ss_pred CCCceEEEec--CCeEEEEEcCceEEEEcC
Q 001851 157 PDTVKSMSWC--GENICIAIRKGYMILNAT 184 (1004)
Q Consensus 157 ~d~~~~l~~~--~~~i~v~~~~~y~lidl~ 184 (1004)
.++|.+|... |.+|+..|++--.||+..
T Consensus 618 G~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 618 GDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 7889887665 678887777766777764
No 246
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=68.90 E-value=77 Score=39.07 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=46.5
Q ss_pred HhcCCHHHHHHHHhhCCCchhh---------h----------hhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHH
Q 001851 311 TASGDFEEALALCKLLPPEDAS---------L----------RAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITY 371 (1004)
Q Consensus 311 l~~~~~eeAl~L~~~~~~~~~~---------~----------~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~ 371 (1004)
++-|++|||+.|-+++..-|-. + ++-.++.-+-+||-+|=..++.+.|+++|.++++.--+
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 5677777777777665321110 0 01123445567788888999999999999999887777
Q ss_pred HHHhCCCC
Q 001851 372 ALSLYPSI 379 (1004)
Q Consensus 372 vi~Lfp~~ 379 (1004)
|.++..+.
T Consensus 891 v~rmL~e~ 898 (1416)
T KOG3617|consen 891 VFRMLKEY 898 (1416)
T ss_pred HHHHHHhC
Confidence 77776444
No 247
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.91 E-value=7.9 Score=47.64 Aligned_cols=186 Identities=17% Similarity=0.244 Sum_probs=98.1
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCCChHhHHHHhcccCCCCchhHHhhchhhhccC-ccchhccc
Q 001851 550 TALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESC-PTQTIELF 628 (1004)
Q Consensus 550 ~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~-p~~~i~if 628 (1004)
+..-..|..+|+|++||++-..- ++ .++ ..+.+++..+++.. -..|-+++
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~------------------p~-~le----------~Vl~~qAdf~f~~k~y~~AA~~y 412 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR------------------PD-ALE----------TVLLKQADFLFQDKEYLRAAEIY 412 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC------------------HH-HHH----------HHHHHHHHHHHhhhHHHHHHHHH
Confidence 34456788999999999986531 01 000 01223333333321 22233333
Q ss_pred ccCCCChHH-HHHHHhhcCccchhhhHHHHHhcc---cCCCCcchHHHHHHHHHHHHHHhhhhh-hhhcccCcccchHHH
Q 001851 629 LSGNIPADL-VNSYLKQYSPSMQGRYLELMLAMN---ENSISGNLQNEMVQIYLSEVLDWYSDL-SAQQKWDEKAYSPTR 703 (1004)
Q Consensus 629 ~~~~l~~~~-vl~~L~~~~~~l~~~YLE~li~~~---~~~~~~~~h~~L~~~Yl~~~~~~~~~~-~~~~~~~~~~~~~~r 703 (1004)
.+-.-+-+. +++||.-.+++....||..=...- ++.....+-+=|+.+||+++.++.... ..-.+. .......+
T Consensus 413 A~t~~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~-~~~~~~~~ 491 (911)
T KOG2034|consen 413 AETLSSFEEVALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENW-RLEYDEVQ 491 (911)
T ss_pred HHhhhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHH-HHHHHHHH
Confidence 222223333 578887776666777776644311 011111233446778888887665110 000000 01112234
Q ss_pred HHHHHHHhh-cCCCChHHHhccCCCCch-------------hHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHH
Q 001851 704 KKLLSALES-ISGYNPEVLLKRLPADAL-------------YEERAILLGKMNQHELALSLYVHKLCVPELALAYCD 766 (1004)
Q Consensus 704 ~kLl~fL~~-s~~Yd~~~~L~~~~~~~l-------------~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~ 766 (1004)
+++..|+.. +..-|-+++.+.+..+.= ++..+.-+-..|.+++||.+++.+ .+.+.--.||-
T Consensus 492 re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~-~~~el~yk~ap 567 (911)
T KOG2034|consen 492 REFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQ-RNPELFYKYAP 567 (911)
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHhhh
Confidence 556666643 344455566665543211 222334567889999999999976 99999999985
No 248
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=67.91 E-value=52 Score=42.27 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=79.6
Q ss_pred eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eEEEeC
Q 001851 25 YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IAFHRL 102 (1004)
Q Consensus 25 ~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~~~~L 102 (1004)
++.+++-|++||++.+|+..+-.... ..+...-+. .....++.++.-++..+-+.+=+ || |.++++
T Consensus 1060 ~~s~FvsgS~DGtVKvW~~~k~~~~~-----------~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRKLEGEG-----------GSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred CCceEEEecCCceEEEeeehhhhcCc-----------ceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence 34578889999999999987643210 111111111 12467899999999887665555 47 999998
Q ss_pred CCCccc------ccccCCC--Cc----EEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeec-CCCceEEEec--
Q 001851 103 PNLETI------AVLTKAK--GA----NVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWC-- 166 (1004)
Q Consensus 103 ~~l~~~------~~i~~~k--g~----~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l-~d~~~~l~~~-- 166 (1004)
...... ..+...+ |+ +.|........++++ .-++|..+...-.+..... +..+ .+.+++++..
T Consensus 1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-k~~~~hG~vTSi~idp~ 1206 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-KNQLRHGLVTSIVIDPW 1206 (1431)
T ss_pred cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-hcCccccceeEEEecCC
Confidence 663211 0111111 11 122222222233333 3445554443211111111 2222 4567777765
Q ss_pred CCeEEEEEcCce-EEEEcCCC
Q 001851 167 GENICIAIRKGY-MILNATNG 186 (1004)
Q Consensus 167 ~~~i~v~~~~~y-~lidl~~~ 186 (1004)
++++|+|+.+|- .+.|+.-+
T Consensus 1207 ~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1207 CNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred ceEEEEecCCceEEEEEeecC
Confidence 579999998775 44577654
No 249
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=67.50 E-value=3.5 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.553 Sum_probs=24.6
Q ss_pred CCcCCCccCCcEEEEcCCCCeEEEecccCCc
Q 001851 959 CSLCSKKIGTSVFAVYPNGKTIVHFVCFRDS 989 (1004)
Q Consensus 959 C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~ 989 (1004)
|++|...+.... .+.|+| |.+++.|+...
T Consensus 1 C~iC~~~~~~~~-~~~~C~-H~fC~~C~~~~ 29 (41)
T PF00097_consen 1 CPICLEPFEDPV-ILLPCG-HSFCRDCLRKW 29 (41)
T ss_dssp ETTTSSBCSSEE-EETTTS-EEEEHHHHHHH
T ss_pred CCcCCccccCCC-EEecCC-CcchHHHHHHH
Confidence 889999988777 459999 99999998754
No 250
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=67.49 E-value=18 Score=40.20 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=50.3
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
+..|+.|...+ ..|.-|.++|++.+|++...+.+ +.+.+|+ +++.||+.|.--|...-.+..
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~---------------~pVA~fk-~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG---------------QPVATFK-YHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---------------CcceeEE-eccCCeeEEEeccccCceEEe
Confidence 45666665554 36999999999999999876542 2233333 578999999988866544444
Q ss_pred e--C-ceEEEeCC
Q 001851 94 S--E-SIAFHRLP 103 (1004)
Q Consensus 94 ~--d-~v~~~~L~ 103 (1004)
+ | .|++|+|.
T Consensus 366 sg~D~QitiWDls 378 (440)
T KOG0302|consen 366 SGEDNQITIWDLS 378 (440)
T ss_pred ccCCCcEEEEEee
Confidence 3 3 49999984
No 251
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.86 E-value=14 Score=41.44 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=47.8
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..|+|+++. |+++.+||.+|.+.+|....- +...-++..|.--|+.+..+|..+.+..++
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l------------------q~~~~vk~aH~~~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSL------------------QRLQYVKEAHLGFVTGLTFSPDSRYLASVS 343 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCcEEEEEecee------------------eeeEeehhhheeeeeeEEEcCCcCcccccc
Confidence 478998887 479999999999999986642 222222334455899999999888887765
Q ss_pred -Cc-eEEEeC
Q 001851 95 -ES-IAFHRL 102 (1004)
Q Consensus 95 -d~-v~~~~L 102 (1004)
|. ..+..|
T Consensus 344 s~~~~~v~~l 353 (398)
T KOG0771|consen 344 SDNEAAVTKL 353 (398)
T ss_pred cCCceeEEEE
Confidence 32 444443
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.62 E-value=9 Score=26.16 Aligned_cols=28 Identities=36% Similarity=0.729 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCC
Q 001851 344 RFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPS 378 (1004)
Q Consensus 344 ~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~ 378 (1004)
..|..++..|++++|...|.+ ++..||+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~-------~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQR-------LIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-------HHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHH-------HHHHCcC
Confidence 458888889999999999976 6788885
No 253
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=66.06 E-value=2.5e+02 Score=34.45 Aligned_cols=142 Identities=12% Similarity=0.173 Sum_probs=93.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c-eEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~ 103 (1004)
.++|+=+++|+++..|.+...+ ..-..+ -+.-||=.+...|..-.+++.+. + ..+|.-.
T Consensus 463 ~rfLlScSED~svRLWsl~t~s------------------~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTWS------------------CLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred ccceeeccCCcceeeeecccce------------------eEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 3567777778999999877432 211223 24568888888888777777775 4 6777654
Q ss_pred CCccccc-ccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeec-CCCceEEEec--CCeEEEEEc-Cc
Q 001851 104 NLETIAV-LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTVKSMSWC--GENICIAIR-KG 177 (1004)
Q Consensus 104 ~l~~~~~-i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l-~d~~~~l~~~--~~~i~v~~~-~~ 177 (1004)
...|... +.....+.|+.++++...++-+ .++.+.+|....|.. +|-|.- ..++.++++. |.++.-|.. .-
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 4444322 2345567788888887777776 788899998876542 232332 3577888886 566666665 34
Q ss_pred eEEEEcCCCCcc
Q 001851 178 YMILNATNGALS 189 (1004)
Q Consensus 178 y~lidl~~~~~~ 189 (1004)
..+.|+.+|...
T Consensus 601 I~iWDl~~~~~v 612 (707)
T KOG0263|consen 601 IKIWDLANGSLV 612 (707)
T ss_pred EEEEEcCCCcch
Confidence 667799998643
No 254
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.97 E-value=20 Score=42.26 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=23.0
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCC
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGS 45 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~ 45 (1004)
+.+|.|.+.. ++.|++||.||.|..|+...
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~ 290 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR 290 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCC
Confidence 4556665554 47999999999999998654
No 255
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=65.60 E-value=41 Score=36.48 Aligned_cols=116 Identities=11% Similarity=0.235 Sum_probs=74.7
Q ss_pred cccccCC---CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCceeEEE
Q 001851 9 LELISNC---SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKPILSME 82 (1004)
Q Consensus 9 ~~l~~~~---~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-k~~I~qI~ 82 (1004)
+|+++.+ -..|+|++.|. .-|.=|..|++|..|+....+. ++.+ +-|. --+|..|.
T Consensus 162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa------------KrA~------K~~qd~~~vrsiS 223 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA------------KRAF------KVFQDTEPVRSIS 223 (430)
T ss_pred CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH------------HHHH------HHhhccceeeeEe
Confidence 4666655 35789999996 4567799999999999775332 1122 2232 35999999
Q ss_pred EecccCceeeeeCc--eEEEeCCCCccc-ccc---cCCCCcEEEEecCCCcEEEEE-E-CCeEEEEEec
Q 001851 83 VLASRQLLLSLSES--IAFHRLPNLETI-AVL---TKAKGANVYSWDDRRGFLCFA-R-QKRVCIFRHD 143 (1004)
Q Consensus 83 ~l~~~~~ll~l~d~--v~~~~L~~l~~~-~~i---~~~kg~~~f~~~~~~~~l~V~-~-kkki~l~~~~ 143 (1004)
.=|..+++++=+|. +.+|++.+++-. ... ..+-+++.+-.+. .+.|.|. . .+-|.||..-
T Consensus 224 fHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 224 FHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred ecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccc
Confidence 99999999999994 999998876421 111 1223444444443 3666665 3 3456666543
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=65.28 E-value=2.5e+02 Score=31.95 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=103.9
Q ss_pred eEEEEecccCceeeee---Cc-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeee
Q 001851 79 LSMEVLASRQLLLSLS---ES-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDF 154 (1004)
Q Consensus 79 ~qI~~l~~~~~ll~l~---d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi 154 (1004)
.++.+.+....|++-. +. |.+.++.+-+.+..+.--.+...|..++... .+.....+..-+..+..... ..+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~-~~~~~Dg~~~~v~~d~~g~~-~~~~~ 185 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTF-FMHCRDGSLAKVGYGTKGNP-KIKPT 185 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCcc-EEEeecCceEEEEecCCCce-EEeee
Confidence 3566677766776654 23 9999988876666554433445555554432 33334445545454432121 12211
Q ss_pred ec--C------CCceEEEe-cCCeEEEEEcCceEEEEcCCCCc-----ccccCCCC---CC-----CCEEEEccCCeEEE
Q 001851 155 GV--P------DTVKSMSW-CGENICIAIRKGYMILNATNGAL-----SEVFPSGR---IG-----PPLVVSLLSGELLL 212 (1004)
Q Consensus 155 ~l--~------d~~~~l~~-~~~~i~v~~~~~y~lidl~~~~~-----~~L~~~~~---~~-----~p~i~~~~~~E~Ll 212 (1004)
.+ + ..|. ... .|..+++++....+++|+.+... ..+++.+. .- .|+...-+.+.+.+
T Consensus 186 ~vf~~~~~~v~~rP~-~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 186 EVFHPEDEYLINHPA-YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred eeecCCccccccCCc-eEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 11 2 3342 233 35678888888899999765432 23332221 01 23332234456655
Q ss_pred EeC-----------CeEEEEcC-CCCcccCcceeecCCCceEEEe---CCeEEEEcC--CeeEEEEccCCCceeEEE-ee
Q 001851 213 GKE-----------NIGVFVDQ-NGKLLQADRICWSEAPIAVIIQ---KPYAIALLP--RRVEVRSLRVPYALIQTI-VL 274 (1004)
Q Consensus 213 ~~~-----------~~gvfv~~-~G~~~~~~~i~w~~~P~~i~~~---~PYll~~~~--~~ieV~~l~~~~~lvQti-~l 274 (1004)
... +..-.+|. .++.. ..|.-...|..+++. .|++++... +.|.|++.. ++..+.++ .+
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi--~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~-t~k~i~~i~~v 341 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTGKRL--RKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE-TGKELSSVNQL 341 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCCeEE--EEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc-CCeEEeeeccC
Confidence 331 22334443 44433 456666777788875 367777774 569999986 57788887 55
Q ss_pred CC
Q 001851 275 QN 276 (1004)
Q Consensus 275 ~~ 276 (1004)
..
T Consensus 342 g~ 343 (352)
T TIGR02658 342 GR 343 (352)
T ss_pred CC
Confidence 43
No 257
>PHA02929 N1R/p28-like protein; Provisional
Probab=65.02 E-value=2.2 Score=45.16 Aligned_cols=44 Identities=16% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCCCcCCcCCCccCCcE-----EEE-cCCCCeEEEecccC---CchhhhhhccC
Q 001851 954 TSDSMCSLCSKKIGTSV-----FAV-YPNGKTIVHFVCFR---DSQSMKAVAKG 998 (1004)
Q Consensus 954 ~~~~~C~vC~k~l~~~~-----f~v-~p~~~~v~H~~C~~---~~~~~~~~~~~ 998 (1004)
..+..|++|...+..+. |.+ -||+ |+||..|+. .....||+=|.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~~~tCPlCR~ 224 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKEKNTCPVCRT 224 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhcCCCCCCCCC
Confidence 35689999999876532 333 4798 999999996 33567887543
No 258
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=64.76 E-value=2.9e+02 Score=32.57 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=99.9
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc-eEEEeCCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAFHRLPNL 105 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~-v~~~~L~~l 105 (1004)
.-|+-..+||.|.+|.-.+-- +. +++ ++ .-+|....-.|..+-++.+.++ +.+-.|..-
T Consensus 117 tgLlt~GEDG~iKiWSrsGML------------RS---tl~----Q~-~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n 176 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRSGML------------RS---TVV----QN-EESIRCARWAPNSNSIVFCQGGHISIKPLAAN 176 (737)
T ss_pred ceeeeecCCceEEEEeccchH------------HH---HHh----hc-CceeEEEEECCCCCceEEecCCeEEEeecccc
Confidence 356777778888888644311 00 111 11 3488888888888877777664 554443211
Q ss_pred -cccccccCCCCcEEEEecCCC-cEEEEEECCeEEEEEecC-CC-ceeEeeeeecCCCceEEEecCCeEEEEEcCceEEE
Q 001851 106 -ETIAVLTKAKGANVYSWDDRR-GFLCFARQKRVCIFRHDG-GR-GFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMIL 181 (1004)
Q Consensus 106 -~~~~~i~~~kg~~~f~~~~~~-~~l~V~~kkki~l~~~~~-~~-~f~~~kEi~l~d~~~~l~~~~~~i~v~~~~~y~li 181 (1004)
+++. =+...-...++|-+. ..|++.....+.+--|+. |. .|.. -.-..++++++|..+.++..-. |.+.
T Consensus 177 ~k~i~--WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S---~~~ey~ITSva~npd~~~~v~S--~nt~ 249 (737)
T KOG1524|consen 177 SKIIR--WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS---AAEEYAITSVAFNPEKDYLLWS--YNTA 249 (737)
T ss_pred cceeE--EeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC---Chhccceeeeeeccccceeeee--eeee
Confidence 1110 011122334444333 335554444444444542 21 2221 1223478999999654432211 3333
Q ss_pred EcCCCCcccccCCC--CCCCCEEEEccCCeEEEEe--CC---eEEE-----------E-cCCCCcccCcceeecCCCceE
Q 001851 182 NATNGALSEVFPSG--RIGPPLVVSLLSGELLLGK--EN---IGVF-----------V-DQNGKLLQADRICWSEAPIAV 242 (1004)
Q Consensus 182 dl~~~~~~~L~~~~--~~~~p~i~~~~~~E~Ll~~--~~---~gvf-----------v-~~~G~~~~~~~i~w~~~P~~i 242 (1004)
.+..-.+-.+|..+ ..+.-..+....+.+++++ +. .+.| + |..... ...++++.....+
T Consensus 250 R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v--~d~LE~p~rv~k~ 327 (737)
T KOG1524|consen 250 RFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGV--QDILEFPQRVVKF 327 (737)
T ss_pred eecCCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhH--HHHhhCccceeee
Confidence 34333333333221 0111222223334443332 11 0111 1 100000 1455677776778
Q ss_pred EEeCCeEEEEcCCeeEEEEcc
Q 001851 243 IIQKPYAIALLPRRVEVRSLR 263 (1004)
Q Consensus 243 ~~~~PYll~~~~~~ieV~~l~ 263 (1004)
...+.|+++.++..+.|++-.
T Consensus 328 sL~Y~hLvvaTs~qvyiys~k 348 (737)
T KOG1524|consen 328 SLGYGHLVVATSLQVYIYSEK 348 (737)
T ss_pred eeceeEEEEEeccEEEEEecC
Confidence 888999999999999998865
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=64.67 E-value=18 Score=38.55 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=52.1
Q ss_pred ChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 302 PLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 302 ~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
-+-.+....++.|.|++|..-++.+.. ..+. ....++.....|+..+..++|++|...+.+ .|.+||..
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~-~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr-------Fi~lyP~~ 104 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDS-RHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDR-------FIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHH-------HHHhCCCC
Confidence 355677888999999999999987631 1111 123366777889999999999999998755 67888876
No 260
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=64.33 E-value=34 Score=36.33 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=46.2
Q ss_pred CceeEEEEecccCceeeee-Cc-eEEEeCCCCcccccccC-CCCcEEEEecCCCcEEEEEE-CCeEEEEEe
Q 001851 76 KPILSMEVLASRQLLLSLS-ES-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCFAR-QKRVCIFRH 142 (1004)
Q Consensus 76 ~~I~qI~~l~~~~~ll~l~-d~-v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~~-kkki~l~~~ 142 (1004)
-.|.-+.+=|+..++.+-. |+ +.+|...++.|++.+.. .-||+++++.++.+.++.|. ..+|.|+++
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 4677777777655544433 44 99999888888765432 35889999988877787774 457777753
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=64.20 E-value=5.9 Score=27.60 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 341 IHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 341 i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+....|..++..++|++|+..|.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3455689999999999999999885
No 262
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=63.66 E-value=2.3e+02 Score=30.93 Aligned_cols=152 Identities=7% Similarity=0.121 Sum_probs=90.8
Q ss_pred EEEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEec-ccCceeee-eC
Q 001851 19 IDAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-SRQLLLSL-SE 95 (1004)
Q Consensus 19 I~ci~~~-~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~-~~~~ll~l-~d 95 (1004)
++|+..- +++|+-|+.|.+.-.|+++... ..+.|.+ +..-|-.|.+.| ..|.++.- ||
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g~------------------~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETGQ------------------QTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccce------------------EEEEecC-CcccEEEEecCCCCCCeEEecccc
Confidence 5554444 5799999999999999988532 2223333 345799999999 55666654 35
Q ss_pred c-eEEEeCCCCccccccc-CCCCcEEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeecCCCceEEEec--CCeE
Q 001851 96 S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENI 170 (1004)
Q Consensus 96 ~-v~~~~L~~l~~~~~i~-~~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i 170 (1004)
. ..+|++.+-.-+.+.+ ..-.++.+++-++...++-+. .....+|.+..+.+......-...-++.+++|. |..+
T Consensus 209 ~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred cceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 4 8899975532222221 123455666656554455553 456778888755443322212233467888886 5666
Q ss_pred EEEEc-CceEEEEcCCCCcc
Q 001851 171 CIAIR-KGYMILNATNGALS 189 (1004)
Q Consensus 171 ~v~~~-~~y~lidl~~~~~~ 189 (1004)
+.|.. ....+-|.-.++..
T Consensus 289 fagy~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 289 FAGYDDFTCNVWDTLKGERV 308 (343)
T ss_pred EeeecCCceeEeeccccceE
Confidence 66655 34455565555433
No 263
>PLN03077 Protein ECB2; Provisional
Probab=63.44 E-value=4.3e+02 Score=34.08 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHh
Q 001851 549 YTALLELYKSNARHREALKLLHELV 573 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~ 573 (1004)
|..|+..|.+.|++++|.+++.++.
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 6788888888888888888887653
No 264
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=63.36 E-value=79 Score=37.71 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHhhCCC--chhhhhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 310 LTASGDFEEALALCKLLPP--EDASLRAA-KEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 310 Ll~~~~~eeAl~L~~~~~~--~~~~~~~~-~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+..++++|+|+.+.+.... .+..-..+ .+..++...|+.++..|+|++|.++|.++
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3468899999988865210 01110112 45678889999999999999999999885
No 265
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=62.78 E-value=64 Score=36.26 Aligned_cols=114 Identities=18% Similarity=0.371 Sum_probs=72.5
Q ss_pred CCCceeEEEEeccc-CceeeeeC-c-eEEEeCCCCc-------cccc-ccCCCCcEEEEecCCCcE--EEEEECCeEEEE
Q 001851 74 SKKPILSMEVLASR-QLLLSLSE-S-IAFHRLPNLE-------TIAV-LTKAKGANVYSWDDRRGF--LCFARQKRVCIF 140 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~-~~ll~l~d-~-v~~~~L~~l~-------~~~~-i~~~kg~~~f~~~~~~~~--l~V~~kkki~l~ 140 (1004)
++.+|..+.-.|-. +.+...+| . |.+|.+|+-- ++.. ....|.|..+++.+.-.. +..+....+.++
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 46788888888866 45555666 3 9999997631 1111 123444555555553322 223355666677
Q ss_pred EecCCCceeEeeeeecCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCccc
Q 001851 141 RHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSE 190 (1004)
Q Consensus 141 ~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~ 190 (1004)
-..-|..... +.-||.+.+|.|. |+.+|-+++ +...++|..+|.+..
T Consensus 160 nv~tgeali~---l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 160 NVGTGEALIT---LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred eccCCceeee---cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 6654433322 3479999999997 678888887 678999999987543
No 266
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.33 E-value=64 Score=36.75 Aligned_cols=155 Identities=12% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceee--eeecC----CCCCceeEEEEeccc-Cceeeee-Cc-
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELE--RTISG----FSKKPILSMEVLASR-QLLLSLS-ES- 96 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~----~~k~~I~qI~~l~~~-~~ll~l~-d~- 96 (1004)
||++.|||-+-.|.+|++.-...... --.|+....+.. +..+. .+..+|..+..-... ++|..=+ |.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P----~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLP----CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred cceEEEeccCceeEEecccccccccc----ceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 57999999999999999875432100 001111000000 00011 122233344333222 3333322 33
Q ss_pred eEEEeCCCCccccccc-CCCCcEEEEecCCCcEEEE-E-ECCeEEEEEecCCCceeEeeeeecCCCceEEEecC---CeE
Q 001851 97 IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCF-A-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG---ENI 170 (1004)
Q Consensus 97 v~~~~L~~l~~~~~i~-~~kg~~~f~~~~~~~~l~V-~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~---~~i 170 (1004)
|.+|++.+-++..+++ ..+.+++..+++..+.+.+ + ..+.+.++....- -..-++..+.+.+-.++|.. +..
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~--~~s~~~wk~~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP--SNSGKEWKFDGEVEKVAWDPHSENSF 345 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc--cccCceEEeccceEEEEecCCCceeE
Confidence 9999999888776665 6788999999877665444 4 5678888876521 11234566778888899973 456
Q ss_pred EEEEcCc-eEEEEcCCC
Q 001851 171 CIAIRKG-YMILNATNG 186 (1004)
Q Consensus 171 ~v~~~~~-y~lidl~~~ 186 (1004)
++++..+ .+-+|+.+.
T Consensus 346 ~~~tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNP 362 (463)
T ss_pred EEecCCceEEeeecCCC
Confidence 6676655 344677654
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=62.12 E-value=25 Score=38.69 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--c-eEEEeC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S-IAFHRL 102 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--~-v~~~~L 102 (1004)
++-|+-|+.+|.|+.+++.....+ ..+.. ..-++.+.|+.++++...+-.|..+| | |++|++
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG------------~~~~a---~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQG------------NGWCA---QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccC------------CCcce---EEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 567899999999999998754221 12221 23367889999999984444455555 5 999997
Q ss_pred CCCcccccccCCCC-c-----EEEEecCCCcEEEEEE-CCeEEEEEecCCCceeEeeeeecCC
Q 001851 103 PNLETIAVLTKAKG-A-----NVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFGVPD 158 (1004)
Q Consensus 103 ~~l~~~~~i~~~kg-~-----~~f~~~~~~~~l~V~~-kkki~l~~~~~~~~f~~~kEi~l~d 158 (1004)
...+-...+...-| + .-+.++++.|.|+.+. .=-..||.++.|. .+.++++|.
T Consensus 329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh---Ll~tipf~~ 388 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH---LLCTIPFPY 388 (425)
T ss_pred hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc---eeeccCCCC
Confidence 54432111111110 1 1244555556544432 2234566666443 445555543
No 268
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.66 E-value=1.4e+02 Score=34.40 Aligned_cols=164 Identities=11% Similarity=0.128 Sum_probs=93.1
Q ss_pred cCCCCcEEEEEEeCC---EEEEEe-CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccC
Q 001851 13 SNCSPKIDAVASYGL---KILLGC-SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ 88 (1004)
Q Consensus 13 ~~~~~~I~ci~~~~~---~L~iGt-~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~ 88 (1004)
..+|..++|+..-|+ .|.|+. ++|.+.+|+-...... . . -+.+++-.||.+|.+.+...
T Consensus 95 ~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-----------~-~-----~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 95 VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-----------D-G-----YFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------c-c-----eecccccCceEEEEeecccc
Confidence 455788888877774 566665 5788888874432211 0 1 12345667999999999888
Q ss_pred ceeeeeC-c-eEEEeCC-CCccc--------------ccccCCCCc-EEEEecCCCcEEEE-EECCeEEEEEecCCCcee
Q 001851 89 LLLSLSE-S-IAFHRLP-NLETI--------------AVLTKAKGA-NVYSWDDRRGFLCF-ARQKRVCIFRHDGGRGFV 149 (1004)
Q Consensus 89 ~ll~l~d-~-v~~~~L~-~l~~~--------------~~i~~~kg~-~~f~~~~~~~~l~V-~~kkki~l~~~~~~~~f~ 149 (1004)
..+.+-. | |..|... .|+.. ....+.|+. ++|++++....+.. +-+++|.+|....|+-.+
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 8877765 4 8888876 22211 123344432 45666655433332 245555555543322111
Q ss_pred Ee-----------------------------eeeecCC-C-ceEEEec--CCeEEEEEcCceEEEEcCCCCcccccC
Q 001851 150 EV-----------------------------KDFGVPD-T-VKSMSWC--GENICIAIRKGYMILNATNGALSEVFP 193 (1004)
Q Consensus 150 ~~-----------------------------kEi~l~d-~-~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~ 193 (1004)
.+ ||+.=.+ . -..+.|. |+.+.+|+--+..++|+.|+.+..++-
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence 11 1111011 1 1223343 578888888888888888887666543
No 269
>PLN03077 Protein ECB2; Provisional
Probab=61.62 E-value=4.6e+02 Score=33.81 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001851 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (1004)
Q Consensus 303 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (1004)
+..-|..+.+.|++++|..+++.++..+.. ...-....+...|++++|++.|.+
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~--------s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRRDCI--------SWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCCCCcc--------hhHHHHHHHHhCCCHHHHHHHHHH
Confidence 456678889999999999999987532211 112223456788999999999976
No 270
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=61.34 E-value=1.9 Score=30.77 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=21.3
Q ss_pred CCcCCCccCCcEEEEcCCCCeEEEecccCC
Q 001851 959 CSLCSKKIGTSVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 959 C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~ 988 (1004)
|++|.... ...++.|+| |++|+.|+..
T Consensus 1 C~iC~~~~--~~~~~~~C~-H~~c~~C~~~ 27 (39)
T smart00184 1 CPICLEEL--KDPVVLPCG-HTFCRSCIRK 27 (39)
T ss_pred CCcCccCC--CCcEEecCC-ChHHHHHHHH
Confidence 78898883 345557999 9999999874
No 271
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=61.33 E-value=2.8 Score=36.48 Aligned_cols=44 Identities=14% Similarity=0.327 Sum_probs=29.3
Q ss_pred CCCCcCCcCCCccC-----------CcEEEEcCCCCeEEEecccC------CchhhhhhccC
Q 001851 954 TSDSMCSLCSKKIG-----------TSVFAVYPNGKTIVHFVCFR------DSQSMKAVAKG 998 (1004)
Q Consensus 954 ~~~~~C~vC~k~l~-----------~~~f~v~p~~~~v~H~~C~~------~~~~~~~~~~~ 998 (1004)
..+..|.+|+.++. .-.++..-|+ |.||.+|+. ..++.||--|.
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~-H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCS-HNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCc-cHHHHHHHHHHHccccCCCCCCCcCC
Confidence 34556666666654 2367778898 999999976 23566765443
No 272
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=61.15 E-value=6.7 Score=31.33 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=16.7
Q ss_pred CCcCCCccCCcEEEEcCCCCeEEEecccC
Q 001851 959 CSLCSKKIGTSVFAVYPNGKTIVHFVCFR 987 (1004)
Q Consensus 959 C~vC~k~l~~~~f~v~p~~~~v~H~~C~~ 987 (1004)
|+.|+++|.....++-..| ..+|..|++
T Consensus 1 C~~C~~~I~~~~~~~~~~~-~~~H~~Cf~ 28 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMG-KFWHPECFK 28 (58)
T ss_dssp BTTTSSBESSSSEEEEETT-EEEETTTSB
T ss_pred CCCCCCCccCcEEEEEeCC-cEEEccccc
Confidence 6677777765544433444 577776665
No 273
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=61.15 E-value=9.6 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=21.9
Q ss_pred cCCcCCCccCCc-EEEEcCCCCeEEEeccc
Q 001851 958 MCSLCSKKIGTS-VFAVYPNGKTIVHFVCF 986 (1004)
Q Consensus 958 ~C~vC~k~l~~~-~f~v~p~~~~v~H~~C~ 986 (1004)
.|.+|+|.+... .+.--+++ ..+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~-f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECC-FTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCC-CeEcCccC
Confidence 599999999877 44444677 89999885
No 274
>PLN03218 maturation of RBCL 1; Provisional
Probab=60.94 E-value=4.4e+02 Score=34.82 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=17.4
Q ss_pred hhHHHHHHHhccccHHHHHHHHH
Q 001851 730 LYEERAILLGKMNQHELALSLYV 752 (1004)
Q Consensus 730 l~~e~~~Ll~rlg~h~~AL~ilv 752 (1004)
.+.-.+-.|++.|+.++|+.++-
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566777888888888887765
No 275
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=60.73 E-value=3.2e+02 Score=34.84 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=89.0
Q ss_pred EEEEEe-CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc----Cceeeee
Q 001851 20 DAVASY-GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR----QLLLSLS 94 (1004)
Q Consensus 20 ~ci~~~-~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~----~~ll~l~ 94 (1004)
+|+..- ++.||||+..|.=..-.+...+.. +| ...+..++.+. .||..+.++... .-+++||
T Consensus 310 ssi~~L~ng~lFvGS~~gdSqLi~L~~e~d~-gs----------y~~ilet~~NL--gPI~Dm~Vvd~d~q~q~qivtCs 376 (1096)
T KOG1897|consen 310 SSINYLDNGVLFVGSRFGDSQLIKLNTEPDV-GS----------YVVILETFVNL--GPIVDMCVVDLDRQGQGQIVTCS 376 (1096)
T ss_pred hhhhcccCceEEEeccCCceeeEEccccCCC-Cc----------hhhhhhhcccc--cceeeEEEEeccccCCceEEEEe
Confidence 565555 479999999997444444433322 11 11122233333 499999988743 5678887
Q ss_pred C----c-eEEEeC----CCCcccccccCCCCcEEEE--ecCCC-cEEEEEECCeEEEEEecCCCceeEeeeeecCCCceE
Q 001851 95 E----S-IAFHRL----PNLETIAVLTKAKGANVYS--WDDRR-GFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKS 162 (1004)
Q Consensus 95 d----~-v~~~~L----~~l~~~~~i~~~kg~~~f~--~~~~~-~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~ 162 (1004)
+ | +.+++- ..+. ...++..||.=... ++++. ..|+++--..-.++.+.+ ++.....-.+.+.-++
T Consensus 377 Ga~kdgSLRiiRngi~I~e~A-~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~--e~ee~~~~gf~~~~~T 453 (1096)
T KOG1897|consen 377 GAFKDGSLRIIRNGIGIDELA-SIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISE--EVEETEDPGFSTDEQT 453 (1096)
T ss_pred CCCCCCcEEEEecccccceee-EeecCCccceeEeeccccccCCcEEEEEeccceEEEEEcc--ceEEeccccccccCce
Confidence 6 2 665552 1221 12345566644444 23322 367777555555556552 3544443344444455
Q ss_pred EEec---CCeEEEEEcCceEEEEcCCCCcccccCCC
Q 001851 163 MSWC---GENICIAIRKGYMILNATNGALSEVFPSG 195 (1004)
Q Consensus 163 l~~~---~~~i~v~~~~~y~lidl~~~~~~~L~~~~ 195 (1004)
+... |+.|.=.+.++..+++-. |....+-+++
T Consensus 454 if~S~i~g~~lvQvTs~~iRl~ss~-~~~~~W~~p~ 488 (1096)
T KOG1897|consen 454 IFCSTINGNQLVQVTSNSIRLVSSA-GLRSEWRPPG 488 (1096)
T ss_pred EEEEccCCceEEEEecccEEEEcch-hhhhcccCCC
Confidence 5433 678888888888888877 6666666655
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.70 E-value=13 Score=45.62 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=71.1
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
.--+|++..+ ++|.||+-.|.|.+|++..+...++ .+-+..+|+.|.-.....++++.+
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcceeeeec
Confidence 4467887775 6999999999999999876543211 223577999999888888888887
Q ss_pred C-c---eEEEeCCC-CcccccccCCCCcEEEEecCCCcEEEEEE-CCeEEEEEecC
Q 001851 95 E-S---IAFHRLPN-LETIAVLTKAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDG 144 (1004)
Q Consensus 95 d-~---v~~~~L~~-l~~~~~i~~~kg~~~f~~~~~~~~l~V~~-kkki~l~~~~~ 144 (1004)
- + ..+|++.+ +.+. ....+++++.+......-+|++ .++..+|...-
T Consensus 1163 s~S~PlsaLW~~~s~~~~~---Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPR---HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred cccCchHHHhccccccCcc---ccccccceeehhhhHHHHHhcccccceEEEeccc
Confidence 6 2 56677643 3333 3345666666655444445553 45667887763
No 277
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=60.31 E-value=2.3e+02 Score=33.85 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=39.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCc--hh-hhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 307 IVQLTASGDFEEALALCKLLPPE--DA-SLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 307 i~~Ll~~~~~eeAl~L~~~~~~~--~~-~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
...+..+|+||.|..+++..-.. +. ...-..+......+|..|-..++|.+|...|.++
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44677899999999999764210 00 0000112333345899999999999999999875
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=60.31 E-value=12 Score=26.66 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Q 001851 549 YTALLELYKSNARHREALKLLHEL 572 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l 572 (1004)
|..|+.+|...|+|++|++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567999999999999999999873
No 279
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.76 E-value=8.3 Score=40.25 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 001851 339 GSIHIRFAHYLFDTGSYEEAMEHFLASQ 366 (1004)
Q Consensus 339 ~~i~~~~a~~lf~~~~f~~A~~~f~~~~ 366 (1004)
..|..-||+.|-.+|+|++|+.+|.++.
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 3678889999999999999999999974
No 280
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=58.94 E-value=83 Score=34.72 Aligned_cols=158 Identities=15% Similarity=0.257 Sum_probs=94.7
Q ss_pred cccccCCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccC
Q 001851 9 LELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ 88 (1004)
Q Consensus 9 ~~l~~~~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~ 88 (1004)
..++..-.+.|-|+.-.+.-|.-|++|.++.+|+++.... .++.. .+-.+|..+.+. .+
T Consensus 230 ~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~------------------l~tli-hHceaVLhlrf~--ng 288 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP------------------LNTLI-HHCEAVLHLRFS--NG 288 (499)
T ss_pred HHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCch------------------hhHHh-hhcceeEEEEEe--CC
Confidence 3344555678999988888889999999999999875432 11111 123467666654 48
Q ss_pred ceeeeeC--ceEEEeCCCCcccc--c--ccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeec-CCCc
Q 001851 89 LLLSLSE--SIAFHRLPNLETIA--V--LTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTV 160 (1004)
Q Consensus 89 ~ll~l~d--~v~~~~L~~l~~~~--~--i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l-~d~~ 160 (1004)
++++++- .+.||+|.+-..++ . +.....++.+-.|. ..|+-| ..+.|.++..+.+ .|..+ +.- .-.+
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~-efvRt--l~gHkRGI 363 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC-EFVRT--LNGHKRGI 363 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce-eeehh--hhcccccc
Confidence 8888884 49999986543222 1 11122333333332 233334 6677878776633 35432 221 1245
Q ss_pred eEEEecCCeEEEEEc-CceEEEEcCCCCccccc
Q 001851 161 KSMSWCGENICIAIR-KGYMILNATNGALSEVF 192 (1004)
Q Consensus 161 ~~l~~~~~~i~v~~~-~~y~lidl~~~~~~~L~ 192 (1004)
.++++.|..++-|+. +...+.|+..|.....+
T Consensus 364 AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 364 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred eehhccCeEEEecCCCceEEEEeccccHHHHHH
Confidence 566666766666655 56788899888655544
No 281
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.92 E-value=3e+02 Score=30.86 Aligned_cols=198 Identities=17% Similarity=0.159 Sum_probs=106.0
Q ss_pred CCCceeEEEEecccCceeeeeC-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeE
Q 001851 74 SKKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVE 150 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~ 150 (1004)
+..+|+++..=|..-+.++-+| + +.+|+..+.+....+ .-++++..+.++ ..|..+|..-+.+.+.-|+.+..|..
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFD-ASGKYLATCSSDLSAKLWDFDTFFRC 185 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEe-cCccEEEecCCccchhheeHHHHHHH
Confidence 4679999988776555555555 4 999998665433322 223444455554 34677777777776777764433444
Q ss_pred eee-eecCCCceEEEec--CCeEEEEEc-CceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEE-EeCC--eEEEEcC
Q 001851 151 VKD-FGVPDTVKSMSWC--GENICIAIR-KGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GKEN--IGVFVDQ 223 (1004)
Q Consensus 151 ~kE-i~l~d~~~~l~~~--~~~i~v~~~-~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll-~~~~--~gvfv~~ 223 (1004)
+|. +.-.+.+.++++. |+.|.=+++ +.+..-++.+|-...-|+....-..++-...++-++- |.++ +.+-+-.
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 443 3334566677765 666665554 5577778888765544443221112222223333332 2222 2233332
Q ss_pred CCC--c-cc-----Ccceeec---CCCceEEEe-----CCeEEEEcC-CeeEEEEccCCCceeEEEe
Q 001851 224 NGK--L-LQ-----ADRICWS---EAPIAVIIQ-----KPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (1004)
Q Consensus 224 ~G~--~-~~-----~~~i~w~---~~P~~i~~~-----~PYll~~~~-~~ieV~~l~~~~~lvQti~ 273 (1004)
.++ . .| -..|.|- .+|....-. .||+..... +.|-+.++. ++..+.|+.
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~-tg~cL~tL~ 331 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS-TGMCLFTLV 331 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc-CCeEEEEEe
Confidence 331 0 01 1345552 233221111 257777775 578899985 677777764
No 282
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.63 E-value=33 Score=36.13 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.8
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEcCCCC
Q 001851 16 SPKIDAVASYGLKILLGCSDGSLKIYSPGSS 46 (1004)
Q Consensus 16 ~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~ 46 (1004)
+..+..+.+.+++|.+=|++|.+++|++...
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~ 42 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKG 42 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 5678889999999999999999999998753
No 283
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=58.21 E-value=1.6e+02 Score=33.07 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=78.3
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-C-ceEEEeCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-E-SIAFHRLPN 104 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d-~v~~~~L~~ 104 (1004)
.+|+=|++|++++.|+-.....+ . .| +.-+.+-|.++...|+...+..-+ | +|.+|+..+
T Consensus 337 erlVSgsDd~tlflW~p~~~kkp-------------i---~r--mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKP-------------I---TR--MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred ceeEEecCCceEEEecccccccc-------------h---hh--hhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 57999999999999985543211 0 11 112456899999999876666554 5 499999877
Q ss_pred Cccccccc-CCCCcEEEEecCCCcEEEEE--ECCeEEEEEecCCCceeEeeeee-cCCCceEEEec--CCeEEEEEcC
Q 001851 105 LETIAVLT-KAKGANVYSWDDRRGFLCFA--RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC--GENICIAIRK 176 (1004)
Q Consensus 105 l~~~~~i~-~~kg~~~f~~~~~~~~l~V~--~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l~~~--~~~i~v~~~~ 176 (1004)
-+.++++. ....+--+++..+ .+|.|. ....|-+|+... +. ...+.+ -.|.+-++.|. |..+|=|-+.
T Consensus 399 Gk~lasfRGHv~~VYqvawsaD-sRLlVS~SkDsTLKvw~V~t-kK--l~~DLpGh~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSAD-SRLLVSGSKDSTLKVWDVRT-KK--LKQDLPGHADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred cchhhhhhhccceeEEEEeccC-ccEEEEcCCCceEEEEEeee-ee--ecccCCCCCceEEEEEecCCCceeecCCCc
Confidence 66665542 1223334555544 455554 345677887762 11 111332 33788899998 4566655443
No 284
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=58.19 E-value=31 Score=41.00 Aligned_cols=71 Identities=13% Similarity=0.360 Sum_probs=54.1
Q ss_pred CcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCC-ce-EEEec--CCeEEEEEcC-ceEEEEcCCCCcc
Q 001851 116 GANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDT-VK-SMSWC--GENICIAIRK-GYMILNATNGALS 189 (1004)
Q Consensus 116 g~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~-~~-~l~~~--~~~i~v~~~~-~y~lidl~~~~~~ 189 (1004)
++...-+++....||.+ .+++|.+++.. ++++..|++|+. ++ +++|. |..|.||.++ ...+.|+.+|...
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 44566678877888887 56679999966 667788888864 44 79998 6799999985 5788999988644
Q ss_pred c
Q 001851 190 E 190 (1004)
Q Consensus 190 ~ 190 (1004)
.
T Consensus 98 ~ 98 (665)
T KOG4640|consen 98 V 98 (665)
T ss_pred e
Confidence 3
No 285
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=57.36 E-value=5.1e+02 Score=32.96 Aligned_cols=58 Identities=5% Similarity=-0.025 Sum_probs=41.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 303 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+.+-+....-.|++++|+.+.......+ ......+...|..+...+++++|...|.++
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-----~~~a~~~~~lA~~~~~~g~~~~A~~~~~~a 75 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-----QLPARGYAAVAVAYRNLKQWQNSLTLWQKA 75 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555667999999999987753111 122345667788999999999999999874
No 286
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=57.09 E-value=7 Score=30.68 Aligned_cols=29 Identities=28% Similarity=0.633 Sum_probs=23.3
Q ss_pred CcCCcCCCccCCcEEEEcCCCCeEEEe-cccC
Q 001851 957 SMCSLCSKKIGTSVFAVYPNGKTIVHF-VCFR 987 (1004)
Q Consensus 957 ~~C~vC~k~l~~~~f~v~p~~~~v~H~-~C~~ 987 (1004)
.+|.+|..|+.....+.-+.| .||. .|++
T Consensus 2 ~~CvVCKqpi~~a~~v~T~~G--~VH~g~C~~ 31 (54)
T PF10886_consen 2 EICVVCKQPIDDALVVETESG--PVHPGVCAQ 31 (54)
T ss_pred CeeeeeCCccCcceEEEcCCC--ccCcHHHHH
Confidence 589999999998877778988 5665 5654
No 287
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=57.03 E-value=18 Score=24.87 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=18.5
Q ss_pred EeCCEEEEEeCCCcEEEEcCCC
Q 001851 24 SYGLKILLGCSDGSLKIYSPGS 45 (1004)
Q Consensus 24 ~~~~~L~iGt~~G~l~~y~~~~ 45 (1004)
..++.+|+|+.+|.|+.++...
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKT 25 (33)
T ss_pred EECCEEEEEcCCCEEEEEEccc
Confidence 4567899999999999998643
No 288
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=56.84 E-value=5.1e+02 Score=32.81 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhh
Q 001851 549 YTALLELYKSNARHREALKLLHELVE 574 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~ 574 (1004)
+..++.+|...|++++|++++.+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888888888888888877654
No 289
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.71 E-value=35 Score=30.35 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCCChHhHHHHhcccCCCCchhHHhhchhhh
Q 001851 549 YTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVL 617 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll 617 (1004)
-..|+..|...|++++||+.|.++........ +....+.+++++..|+..+ .++.+|-.+|.
T Consensus 25 r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~------~~~ar~~ll~~f~~lg~~~-plv~~~RRkL~ 86 (90)
T PF14561_consen 25 RYALADALLAAGDYEEALDQLLELVRRDRDYE------DDAARKRLLDIFELLGPGD-PLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC------CCHHHHHHHHHHHHH-TT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc------ccHHHHHHHHHHHHcCCCC-hHHHHHHHHHH
Confidence 46789999999999999999999987653210 0011356788888888776 47777766553
No 290
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.99 E-value=17 Score=24.30 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhh
Q 001851 549 YTALLELYKSNARHREALKLLHELVE 574 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~ 574 (1004)
|..+...|...|+.++|++++.+..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 67899999999999999999998754
No 291
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=55.71 E-value=2.7e+02 Score=35.44 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=84.1
Q ss_pred ccccccccCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEE
Q 001851 6 FDSLELISNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEV 83 (1004)
Q Consensus 6 f~~~~l~~~~~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~ 83 (1004)
|.+..++..=++.|.-++.. +..|.-|.-|+.|.+|+.. .+...+...+ +...|.-+..
T Consensus 119 wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~------------------tF~~~~vl~~-H~s~VKGvs~ 179 (942)
T KOG0973|consen 119 WKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK------------------TFELLKVLRG-HQSLVKGVSW 179 (942)
T ss_pred eeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc------------------cceeeeeeec-ccccccceEE
Confidence 44455555556667666555 5688899999999999854 2444444333 4568888999
Q ss_pred ecccCceeeeeC-c-eEEEeCCCCcccccc----cCCCCcEEE---EecCCCcEEEEE--ECCe---EEEEEecCCCcee
Q 001851 84 LASRQLLLSLSE-S-IAFHRLPNLETIAVL----TKAKGANVY---SWDDRRGFLCFA--RQKR---VCIFRHDGGRGFV 149 (1004)
Q Consensus 84 l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i----~~~kg~~~f---~~~~~~~~l~V~--~kkk---i~l~~~~~~~~f~ 149 (1004)
.|-+..+.+.+| . |.+|+..++.....+ ...-+-++| .++++...|+++ +++. +.|++.+ .++
T Consensus 180 DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~---tWk 256 (942)
T KOG0973|consen 180 DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG---TWK 256 (942)
T ss_pred CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC---Cce
Confidence 999999999998 4 999998776433222 122233444 345665566664 4444 4455432 344
Q ss_pred EeeeeecCCCceEEEe
Q 001851 150 EVKDFGVPDTVKSMSW 165 (1004)
Q Consensus 150 ~~kEi~l~d~~~~l~~ 165 (1004)
.-+.+.-++.|..+.-
T Consensus 257 ~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVR 272 (942)
T ss_pred eeeeeecCCCceEEEE
Confidence 4344444555554433
No 292
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=55.36 E-value=4.7 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=11.3
Q ss_pred cCCcCCCccCC-cEEEEcCCCCeEEEeccc
Q 001851 958 MCSLCSKKIGT-SVFAVYPNGKTIVHFVCF 986 (1004)
Q Consensus 958 ~C~vC~k~l~~-~~f~v~p~~~~v~H~~C~ 986 (1004)
.|.+|++++.. ..+.--.|. ..+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cd-f~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECD-FDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT------HHHH
T ss_pred cCCcCCCcCCCCceEECccCC-CccChhcC
Confidence 69999999988 445545676 89998884
No 293
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=54.45 E-value=3.1e+02 Score=29.61 Aligned_cols=153 Identities=17% Similarity=0.281 Sum_probs=98.6
Q ss_pred ccccccccCC-CCcEEEEEE--eCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEE
Q 001851 6 FDSLELISNC-SPKIDAVAS--YGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSME 82 (1004)
Q Consensus 6 f~~~~l~~~~-~~~I~ci~~--~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~ 82 (1004)
|+...+++.. +..|.+++. +|+.|..|+=|++..+|.-... .|+++....+ +-.-|..+.
T Consensus 50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~----------------efecv~~lEG-HEnEVK~Va 112 (312)
T KOG0645|consen 50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG----------------EFECVATLEG-HENEVKCVA 112 (312)
T ss_pred EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC----------------ceeEEeeeec-cccceeEEE
Confidence 4444445444 456888887 7899999999999999974432 3555554444 356888888
Q ss_pred EecccCceeeee-C-ceEEEeCCC---Ccccccc-cCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeee
Q 001851 83 VLASRQLLLSLS-E-SIAFHRLPN---LETIAVL-TKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG 155 (1004)
Q Consensus 83 ~l~~~~~ll~l~-d-~v~~~~L~~---l~~~~~i-~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~ 155 (1004)
-.+..++|.+++ | +|-++...+ |+-...+ +.+..+..+.+.+....|+-+ =...|.+|+-..+..+..+..+.
T Consensus 113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~ 192 (312)
T KOG0645|consen 113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD 192 (312)
T ss_pred EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence 888999999998 4 488887653 3322222 335566677777766766665 45678888765344455544444
Q ss_pred cCC-CceEEEec--CCeEEEEEc
Q 001851 156 VPD-TVKSMSWC--GENICIAIR 175 (1004)
Q Consensus 156 l~d-~~~~l~~~--~~~i~v~~~ 175 (1004)
-.+ ++=+++|. |+.++-++.
T Consensus 193 g~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 193 GHENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred CccceEEEEEecCCCceEEEecC
Confidence 333 55566665 345555544
No 294
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=54.41 E-value=35 Score=36.00 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 304 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
-.+...++..|++++|+..++....... ........+...|..++..++|++|...|.+ ++..+|+.
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~-------~l~~~p~~ 103 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYP--FSPYAEQAQLDLAYAYYKSGDYAEAIAAADR-------FIRLHPNH 103 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHCcCC
Confidence 3445567899999999999876421100 0012234556669999999999999999977 45666644
No 295
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.10 E-value=2.8e+02 Score=29.64 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=75.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee--Cc-eEEEeC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS--ES-IAFHRL 102 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~--d~-v~~~~L 102 (1004)
++.++..+.||.|.+|+....+.+ ++.++ -+++.|..+.--+..+..++.+ |+ |++|+.
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~P-----------------i~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSKP-----------------IHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred cceEEEEecCceEEEeccCCCCcc-----------------hhHHH-hhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 578999999999999995442211 11111 2456666665555444444444 54 999985
Q ss_pred CCCcccccccCCCCcEE-EEecCCCcEEEE-E-ECCeEEEEEecCCCceeEeeeeecCC-CceEEEecC--CeEEEEEc-
Q 001851 103 PNLETIAVLTKAKGANV-YSWDDRRGFLCF-A-RQKRVCIFRHDGGRGFVEVKDFGVPD-TVKSMSWCG--ENICIAIR- 175 (1004)
Q Consensus 103 ~~l~~~~~i~~~kg~~~-f~~~~~~~~l~V-~-~kkki~l~~~~~~~~f~~~kEi~l~d-~~~~l~~~~--~~i~v~~~- 175 (1004)
..-..+.+....+.|.. .+.++..+.++. + ....+.|+.++....+.. |..+. .+.++.|.. ..+.+...
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~---i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS---IEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE---EEeccceeEeecccccCCcEEEecCC
Confidence 33222332222222211 133554444443 2 566777887653223322 55555 788898973 44444322
Q ss_pred -CceEEEEcCCC
Q 001851 176 -KGYMILNATNG 186 (1004)
Q Consensus 176 -~~y~lidl~~~ 186 (1004)
+-....|+.+-
T Consensus 212 d~~vr~wDir~~ 223 (311)
T KOG0277|consen 212 DNLVRGWDIRNL 223 (311)
T ss_pred CceEEEEehhhc
Confidence 44555666553
No 296
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.12 E-value=81 Score=38.50 Aligned_cols=122 Identities=15% Similarity=0.294 Sum_probs=78.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~~~~L~ 103 (1004)
++..+-+.+.|.|..|++.... .+. +++ ..+..||..+-.-|..+.|.+-+ |+ |++|++.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~---------------r~~--~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPD---------------RCE--KKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred CceEEEecCCceEEEeeccCch---------------hHH--HHh-hcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 5678888999999999988532 122 222 23578999999999777777665 44 9999986
Q ss_pred CC--cccccccCCCCcEEEEecCCCc-EEEE---EECCeEEEEEecCCCceeEeeeeecC-CCceEEEecC
Q 001851 104 NL--ETIAVLTKAKGANVYSWDDRRG-FLCF---ARQKRVCIFRHDGGRGFVEVKDFGVP-DTVKSMSWCG 167 (1004)
Q Consensus 104 ~l--~~~~~i~~~kg~~~f~~~~~~~-~l~V---~~kkki~l~~~~~~~~f~~~kEi~l~-d~~~~l~~~~ 167 (1004)
+- .+..+|..+-.+..+.+.+.+. .|+. +..-.|.+|.+. |.+.....+.-. +.++.|+|.+
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr--RPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR--RPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec--cccccceeeeccCccccceeccC
Confidence 43 3445566666777888877653 3333 234455555554 345444444333 4567799986
No 297
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=53.00 E-value=8.7 Score=31.69 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc-CCCHHHHH
Q 001851 341 IHIRFAHYLFDTGSYEEAMEHFLAS-QVDITYAL 373 (1004)
Q Consensus 341 i~~~~a~~lf~~~~f~~A~~~f~~~-~~dp~~vi 373 (1004)
+....|..++..++|++|+.+|.++ .+||....
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~ 38 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE 38 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 4567799999999999999999885 34544433
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.94 E-value=5.2e+02 Score=31.73 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.2
Q ss_pred eEEEecccChHHHHHHHHhcCCHHHHHHHHhhCC
Q 001851 294 SIFGLFPVPLGAQIVQLTASGDFEEALALCKLLP 327 (1004)
Q Consensus 294 ~i~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~ 327 (1004)
-|..+.-.++.+ +..|++.=.+++|++..+..+
T Consensus 658 ~ii~~~ikslrD-~~~Lve~vgledA~qfiEdnP 690 (1189)
T KOG2041|consen 658 CIIEVMIKSLRD-VMNLVEAVGLEDAIQFIEDNP 690 (1189)
T ss_pred eEEEEEehhhhh-HHHHHHHhchHHHHHHHhcCC
Confidence 455555555554 568888888999999998765
No 299
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=52.68 E-value=31 Score=33.52 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.++...+..+....+-..++.+..+... ..--.......|..+|.+|+|++|...|...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPS--SPYAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555677777666645443211000 0011233445677788888888888887653
No 300
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=52.57 E-value=3.3e+02 Score=29.40 Aligned_cols=157 Identities=17% Similarity=0.250 Sum_probs=101.9
Q ss_pred cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCc
Q 001851 13 SNCSPKIDAVASYGL---KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQL 89 (1004)
Q Consensus 13 ~~~~~~I~ci~~~~~---~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ 89 (1004)
+.-+.++=.++.+.. -|+-|..|-.|.+|...+. ..+++......++++.|..+.--|-.++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~---------------~s~~ck~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG---------------DSWTCKTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC---------------CcEEEEEeccccchheeeeeeecCCCcE
Confidence 333557777887765 5889999999999987641 1366655555678999999999988775
Q ss_pred eeeee-Cc-eEEEeC--CCCcccccccC-CCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeee-cCCCceE
Q 001851 90 LLSLS-ES-IAFHRL--PNLETIAVLTK-AKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG-VPDTVKS 162 (1004)
Q Consensus 90 ll~l~-d~-v~~~~L--~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~ 162 (1004)
|.+=+ |. +.+|.= .+|+-+..++. -..+.+++++.+...|+-. ..|.+-+++.+.+++|.-.--+. -...++.
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 55443 54 666553 34555555433 3457789998888888887 45778899998766674432221 1245788
Q ss_pred EEecC--CeEE-EEEcCceEEEEcC
Q 001851 163 MSWCG--ENIC-IAIRKGYMILNAT 184 (1004)
Q Consensus 163 l~~~~--~~i~-v~~~~~y~lidl~ 184 (1004)
+.|.. +.|+ .++.+...++.-.
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeec
Confidence 88986 3333 2233545555443
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=52.52 E-value=22 Score=24.52 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 341 IHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 341 i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+....|..+...|+|++|+.+|.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556788999999999999999885
No 302
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=52.40 E-value=1.7e+02 Score=34.38 Aligned_cols=128 Identities=11% Similarity=0.204 Sum_probs=76.1
Q ss_pred CCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCC----CCCcccccccccceeeee---e--cCCCCCceeEEEE
Q 001851 16 SPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRS----PPSDYQSLRKESYELERT---I--SGFSKKPILSMEV 83 (1004)
Q Consensus 16 ~~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~----~~~~~~~l~~~~~~~~~~---~--~~~~k~~I~qI~~ 83 (1004)
+.+++|+..- ++.+++.-.+|.+|.|+......... .+.++..+.-....-.++ . -.+...+|.++..
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3678898765 35678888999999998643322111 000111110000000000 0 0134558999999
Q ss_pred ecccCceeeeeC-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEEECCe-EEEEEec
Q 001851 84 LASRQLLLSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQKR-VCIFRHD 143 (1004)
Q Consensus 84 l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~~kkk-i~l~~~~ 143 (1004)
.+....|.+++. | +.+|+..+.+.+..+ .-.-|..|+|++++...|+++.+.. +.+|...
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 998888888874 6 999987654443322 2234778999999877777775544 5577655
No 303
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=52.09 E-value=2.3e+02 Score=27.33 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=62.1
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEec-----ccCceeeeeC-ceEEE
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLA-----SRQLLLSLSE-SIAFH 100 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~-----~~~~ll~l~d-~v~~~ 100 (1004)
-.|..+|..|.|++++......... ....-+ ++.++ .+.|+.|..-+ ....|++=+. ++.+|
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~----------~~~~~i-~~LNi-n~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTG----------RQDSDI-SFLNI-NQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccc----------cccCce-eEEEC-CCceEEEEEEecCCCCCcCEEEEeccceEEEE
Confidence 3788999999999998665432110 000001 12233 55777775544 3466666666 48899
Q ss_pred eCCCCcccccccCCCCcEEEEecC----CCcEEEEEECCeEEEEEecCCCcee
Q 001851 101 RLPNLETIAVLTKAKGANVYSWDD----RRGFLCFARQKRVCIFRHDGGRGFV 149 (1004)
Q Consensus 101 ~L~~l~~~~~i~~~kg~~~f~~~~----~~~~l~V~~kkki~l~~~~~~~~f~ 149 (1004)
+...-..+.-..-.-|++++.+.. ....++|+..=.|.=|.+.+.+.|.
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 875543332223346777776632 2234555666667666666443343
No 304
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=51.49 E-value=3e+02 Score=33.90 Aligned_cols=155 Identities=18% Similarity=0.290 Sum_probs=85.6
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeee-cCCCCCceeEEEEecccCceee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTI-SGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
..+|..|-.. ++.+||=..+|.+..|+..++.....+ .++. .++. ..++ +=|.....=...+++++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~-----~l~~-----~~~~~v~ys-~fv~~~~~~~~~~~ll~ 197 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP-----QLKL-----KSSINVSYS-KFVNDFELENGKDLLLT 197 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc-----cccc-----ccccceehh-hhhcccccccCCceEEE
Confidence 4566665555 679999999999999998443322110 0100 0000 0011 12222221123467777
Q ss_pred eeC--c----eEEEeCC--CC--cccc-c-ccCCC-CcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecC--
Q 001851 93 LSE--S----IAFHRLP--NL--ETIA-V-LTKAK-GANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVP-- 157 (1004)
Q Consensus 93 l~d--~----v~~~~L~--~l--~~~~-~-i~~~k-g~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~-- 157 (1004)
+++ + ..++.+. .- -.+. . +.... .-..||.. .|.+..-.+++|.+|.+. .|+..+.|.+|
T Consensus 198 v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l~~~~i~~ysip---~f~~~~tI~l~~i 272 (670)
T PF10395_consen 198 VSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ--FGKLYQLSKKTISSYSIP---NFQIQKTISLPSI 272 (670)
T ss_pred EEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe--CCEEEEEeCCEEEEEEcC---CceEEEEEEechh
Confidence 766 2 5556651 10 0011 0 11111 11234443 366666688999999987 57777777777
Q ss_pred -----CCceEEEec-CCeEEEEEcCceEEEEcCCC
Q 001851 158 -----DTVKSMSWC-GENICIAIRKGYMILNATNG 186 (1004)
Q Consensus 158 -----d~~~~l~~~-~~~i~v~~~~~y~lidl~~~ 186 (1004)
+.+.++.-. .++|.++..+.-+++|+.=.
T Consensus 273 i~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 273 IDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred hccccccceEeecCCCCeEEEEcCCEEEEEeehhh
Confidence 234454433 58999999999999998644
No 305
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=51.43 E-value=28 Score=37.95 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCCC-hHHHhcc----CC-CCchhHHHHHHHhccccHHHHHHHHHH
Q 001851 702 TRKKLLSALESISGYN-PEVLLKR----LP-ADALYEERAILLGKMNQHELALSLYVH 753 (1004)
Q Consensus 702 ~r~kLl~fL~~s~~Yd-~~~~L~~----~~-~~~l~~e~~~Ll~rlg~h~~AL~ilv~ 753 (1004)
.+..|..+|-....++ +..++.. .+ +..++...+..|.++|++++||..+-.
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 4455555554433333 2223322 22 235777788888888888888877763
No 306
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=51.32 E-value=25 Score=29.47 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.+...+...|++++|+..++....... ....+....|..++..+++++|++.|.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999999876421111 11145667789999999999999999774
No 307
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=51.28 E-value=2.1e+02 Score=31.59 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=86.0
Q ss_pred EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCceeEEEEecccCceeeeeC-c--e
Q 001851 22 VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKPILSMEVLASRQLLLSLSE-S--I 97 (1004)
Q Consensus 22 i~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-k~~I~qI~~l~~~~~ll~l~d-~--v 97 (1004)
+..-|.+||.|.+.. |.+|++....-.. ..|... +.-.++ +.-|.++..-|.....+.+.. + +
T Consensus 166 Fs~DGeqlfaGykrc-irvFdt~RpGr~c-----------~vy~t~-~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~ 232 (406)
T KOG2919|consen 166 FSPDGEQLFAGYKRC-IRVFDTSRPGRDC-----------PVYTTV-TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRV 232 (406)
T ss_pred ecCCCCeEeecccce-EEEeeccCCCCCC-----------cchhhh-hcccccccceeeeeeccCCCCcceeeeccccee
Confidence 333467999999988 8999985422110 011111 000122 335666777776665666665 2 6
Q ss_pred EEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEEEECCeEEEEEec--CCCceeEeee--eecCCCceEEEec----CC
Q 001851 98 AFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCFARQKRVCIFRHD--GGRGFVEVKD--FGVPDTVKSMSWC----GE 168 (1004)
Q Consensus 98 ~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~--~~~~f~~~kE--i~l~d~~~~l~~~----~~ 168 (1004)
-+|.-..-.|...+ ....|++-.++.++..+++++.+|.=-|..|+ ..+. .+.+ -...++=+-|.|. |+
T Consensus 233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--pv~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--PVYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred eeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--hhhhhhhhccCccceEEEecCCCCc
Confidence 66665555666544 34458888899888889999987754444444 2111 1111 1122333444443 45
Q ss_pred eEEEEEc-CceEEEEcCC-CCccc
Q 001851 169 NICIAIR-KGYMILNATN-GALSE 190 (1004)
Q Consensus 169 ~i~v~~~-~~y~lidl~~-~~~~~ 190 (1004)
.+.-|.. ....+.|+.+ |....
T Consensus 311 ~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred eeeccCCCccEEEEecCCCCCccc
Confidence 6666644 4466778877 55333
No 308
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=51.19 E-value=6.9 Score=39.77 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=27.9
Q ss_pred eEEECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccCC
Q 001851 950 VVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 950 ~v~i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~ 988 (1004)
-+...++-.|++|...+..++ +-+|| |+++..|+..
T Consensus 12 ~~~~~~~~~CpICld~~~dPV--vT~CG-H~FC~~CI~~ 47 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPV--VTLCG-HLFCWPCIHK 47 (193)
T ss_pred eccCCCccCCccCCCcCCCcE--EcCCC-chhHHHHHHH
Confidence 344455789999999886553 36999 9999999963
No 309
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=51.02 E-value=1e+02 Score=34.42 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=69.4
Q ss_pred ceeEEEEeccc-Cceeee-eC-ceEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCcee----
Q 001851 77 PILSMEVLASR-QLLLSL-SE-SIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFV---- 149 (1004)
Q Consensus 77 ~I~qI~~l~~~-~~ll~l-~d-~v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~---- 149 (1004)
.|..+..-|-. ++|.++ +| ++.+|++.+-.|+.++...--.+.+|+++ ....+|+....-.+|.++- +-..
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~Dm-R~l~~p~~ 266 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDM-RNLSRPLN 266 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhh-hhhcccch
Confidence 45556555544 455555 45 49999998877776655444557889999 6777777777777777652 1111
Q ss_pred EeeeeecCCCceEEEec--CC-eEEEEEcCceEEEEcCCCCcccccCCCC
Q 001851 150 EVKDFGVPDTVKSMSWC--GE-NICIAIRKGYMILNATNGALSEVFPSGR 196 (1004)
Q Consensus 150 ~~kEi~l~d~~~~l~~~--~~-~i~v~~~~~y~lidl~~~~~~~L~~~~~ 196 (1004)
..+. .-..+..+.|. |. .+--++.+...|+..+.|...+++.+.+
T Consensus 267 v~~d--hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 267 VHKD--HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred hhcc--cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh
Confidence 1111 01123344443 32 3344456777888888887777766544
No 310
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=50.85 E-value=1.3e+02 Score=33.68 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=75.3
Q ss_pred CcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee-
Q 001851 17 PKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL- 93 (1004)
Q Consensus 17 ~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l- 93 (1004)
..+.||+... +.|.-|+++-.|..|+-..... .....++.+ ++.=|+.+.--|.....|+-
T Consensus 301 ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g---------------s~v~~s~~g-H~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 301 KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG---------------SVVSQSLIG-HKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred cceeEeecccccceeeecCCCCceeecCCCCCCC---------------ceeEEeeec-chhhhhheecCCCCceEEEEE
Confidence 4678998887 5788899999999998665432 122233333 45578888888887665543
Q ss_pred e-Cc-eEEEeCCCCc-ccccccCCCCcEEEEecCCCcEEEE--EECCeEEEEEec
Q 001851 94 S-ES-IAFHRLPNLE-TIAVLTKAKGANVYSWDDRRGFLCF--ARQKRVCIFRHD 143 (1004)
Q Consensus 94 ~-d~-v~~~~L~~l~-~~~~i~~~kg~~~f~~~~~~~~l~V--~~kkki~l~~~~ 143 (1004)
+ |+ +.+|++.+-+ |++.+.. .+-..|++|-..+.++| +..++|.+|+..
T Consensus 365 S~D~t~klWDvRS~k~plydI~~-h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTKAPLYDIAG-HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ecCCeEEEEEeccCCCcceeecc-CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 3 55 9999987654 5665543 35567888876665555 377899998854
No 311
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=50.74 E-value=17 Score=35.41 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=41.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 303 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+...-..+.+.|++++|+..++.....+. .....+...|..+...|+|++|...|.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33345567899999999998876321111 12345566788999999999999999875
No 312
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=50.27 E-value=5.3e+02 Score=31.06 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
-++.-+.+.|++++||..++... ..-. ....+...-|..|+.-|++++|...|.+ +|..-|+.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~--~~I~---Dk~~~~E~rA~ll~kLg~~~eA~~~y~~-------Li~rNPdn 71 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNE--KQIL---DKLAVLEKRAELLLKLGRKEEAEKIYRE-------LIDRNPDN 71 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhh--hhCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHHCCCc
Confidence 35667889999999999997652 1111 1134556668999999999999999865 56666654
No 313
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.23 E-value=5.7e+02 Score=31.46 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHHHHh
Q 001851 532 NYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELV 573 (1004)
Q Consensus 532 n~c~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~ 573 (1004)
|.-|.+.++++..+.+++...+.+|.+.|+++.|..+-.++.
T Consensus 777 n~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred cchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 455889999999999999999999999999999999987754
No 314
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=49.58 E-value=3e+02 Score=34.02 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=94.1
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc----CceeeeeC-c-eEEE
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR----QLLLSLSE-S-IAFH 100 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~----~~ll~l~d-~-v~~~ 100 (1004)
=.|.+|.-.|.|.+++..-... .. .-+.+.++|.++.-++.. .+|+++.. + +.+|
T Consensus 80 lliAsaD~~GrIil~d~~~~s~----------------~~---~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLw 140 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASV----------------IN---WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLW 140 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhh----------------hh---hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEE
Confidence 3567778889988887553221 10 012346688888777743 67888887 3 8888
Q ss_pred eCCCCcccccc-cCCCCcEEEEecCC-CcEEEE-EECCeEEEEEecC-------CCceeEeee--------------eec
Q 001851 101 RLPNLETIAVL-TKAKGANVYSWDDR-RGFLCF-ARQKRVCIFRHDG-------GRGFVEVKD--------------FGV 156 (1004)
Q Consensus 101 ~L~~l~~~~~i-~~~kg~~~f~~~~~-~~~l~V-~~kkki~l~~~~~-------~~~f~~~kE--------------i~l 156 (1004)
+-.+-+..=+- ....-..+|.+|+= ...+|| +.++.+++.+..+ |..|+...+ ...
T Consensus 141 ntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 141 NTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred EccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccc
Confidence 64443221110 11122345777752 344565 5777777776532 223433222 111
Q ss_pred CCCceEEEe---------c---CCeEEEEEcCceEEEEcCCCCcccccCCCCCCCCEEEEccC--CeEEEE
Q 001851 157 PDTVKSMSW---------C---GENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLS--GELLLG 213 (1004)
Q Consensus 157 ~d~~~~l~~---------~---~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~--~E~Ll~ 213 (1004)
...+.+..| . .|.++++..++..++|+.=....-..|..+.+.|++-++++ .|+|.|
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE
Confidence 122333222 2 37899999999999999866554444545555677666544 477765
No 315
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=49.51 E-value=36 Score=25.40 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 341 IHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 341 i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
.....|..+...|++++|...|.+ ++.+.|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~-------~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRR-------ALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-------HHHHCcCC
Confidence 345678999999999999999977 35566554
No 316
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.42 E-value=28 Score=38.95 Aligned_cols=41 Identities=17% Similarity=0.467 Sum_probs=31.5
Q ss_pred cCCcCCCccCC-cEEEEcCCCCeEEEecccCC----chhhhhhccCC
Q 001851 958 MCSLCSKKIGT-SVFAVYPNGKTIVHFVCFRD----SQSMKAVAKGS 999 (1004)
Q Consensus 958 ~C~vC~k~l~~-~~f~v~p~~~~v~H~~C~~~----~~~~~~~~~~~ 999 (1004)
.|++|-..... ..+.+.||+ |.||-.|... .-..||+=+.+
T Consensus 231 ~CaIClEdY~~GdklRiLPC~-H~FH~~CIDpWL~~~r~~CPvCK~d 276 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCS-HKFHVNCIDPWLTQTRTFCPVCKRD 276 (348)
T ss_pred eEEEeecccccCCeeeEecCC-CchhhccchhhHhhcCccCCCCCCc
Confidence 89999988643 456669999 9999999863 24668886654
No 317
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=48.99 E-value=2.1e+02 Score=34.69 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=79.5
Q ss_pred CCcEEEEEEeC--C---EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCce
Q 001851 16 SPKIDAVASYG--L---KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL 90 (1004)
Q Consensus 16 ~~~I~ci~~~~--~---~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~l 90 (1004)
..+|+|+.--- + +++.|.+||.+.+|.+..+ .+..+.++.+ +.+.+..+...+... .
T Consensus 54 ~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~----------------~~~~i~~~~g-~~~~~~cv~a~~~~~-~ 115 (764)
T KOG1063|consen 54 VARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE----------------YLIKIYTIQG-HCKECVCVVARSSVM-T 115 (764)
T ss_pred ccceEEEEEcccccccceEEEccCCCcEEEEEEeeh----------------heEEEEeecC-cceeEEEEEeeeeEE-E
Confidence 46788886652 2 6999999999999998832 2233334444 455555554433211 1
Q ss_pred eeeeCc-eEEEeCCCCc--cccccc-CCCCcE--EEEe--cCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeec-CCCc
Q 001851 91 LSLSES-IAFHRLPNLE--TIAVLT-KAKGAN--VYSW--DDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-PDTV 160 (1004)
Q Consensus 91 l~l~d~-v~~~~L~~l~--~~~~i~-~~kg~~--~f~~--~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l-~d~~ 160 (1004)
...+|+ +.+|+...-+ ....+. .+|-+. |++. +.+...++++ .++.+.+|.-. ..+|....|+.- .|=|
T Consensus 116 ~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~-~d~f~~v~el~GH~DWI 194 (764)
T KOG1063|consen 116 CKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSS-ADSFARVAELEGHTDWI 194 (764)
T ss_pred eeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccC-CcceeEEEEeeccchhh
Confidence 123565 8888862222 011111 111111 1111 2222345665 55566666655 447888888754 4679
Q ss_pred eEEEec---CCeEEEEEcCc
Q 001851 161 KSMSWC---GENICIAIRKG 177 (1004)
Q Consensus 161 ~~l~~~---~~~i~v~~~~~ 177 (1004)
++++|. ++.+.+++.++
T Consensus 195 rsl~f~~~~~~~~~laS~SQ 214 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQ 214 (764)
T ss_pred hhhhhhccCCCcEEEEecCC
Confidence 999987 44677776654
No 318
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.60 E-value=1.6e+02 Score=34.49 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=88.4
Q ss_pred cEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC
Q 001851 18 KIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (1004)
Q Consensus 18 ~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d 95 (1004)
+|.++++.+ +...-.++|-++..|.+....... ++..+.-+. .-++++|..|..+.... -++-||
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~-----------~tsaCQfTY-~aHkk~i~~igfL~~lr-~i~ScD 803 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI-----------GTSACQFTY-QAHKKPIHDIGFLADLR-SIASCD 803 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCcc-----------ccceeeeEh-hhccCcccceeeeeccc-eeeecc
Confidence 455555544 455667788888999887543321 111111111 23689999999998643 445566
Q ss_pred -ceEEEeCCCCccccccc----CCCCcEEEEe-cCCCcEEEEE--ECCeEEEEEecCCCceeEeeee--ecC-CCceEEE
Q 001851 96 -SIAFHRLPNLETIAVLT----KAKGANVYSW-DDRRGFLCFA--RQKRVCIFRHDGGRGFVEVKDF--GVP-DTVKSMS 164 (1004)
Q Consensus 96 -~v~~~~L~~l~~~~~i~----~~kg~~~f~~-~~~~~~l~V~--~kkki~l~~~~~~~~f~~~kEi--~l~-d~~~~l~ 164 (1004)
++++|+=.--.+..++. ...|.+.-|+ +.++..+..+ ....+.+|....+.--..+|-. +.| ...++++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 59999832212222211 1223334444 2244333332 4556666765433211234433 344 3466777
Q ss_pred ec--CCeEEEEEcCc-eEEEEcCCCCccc
Q 001851 165 WC--GENICIAIRKG-YMILNATNGALSE 190 (1004)
Q Consensus 165 ~~--~~~i~v~~~~~-y~lidl~~~~~~~ 190 (1004)
.. ||++.+|..++ ..++|..+|.++.
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceec
Confidence 65 78999998766 5678999987544
No 319
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=48.48 E-value=36 Score=33.04 Aligned_cols=60 Identities=22% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (1004)
.+|.+.+.+|++++|+..++...+.--.....-.-.++.+....++..++..+|+++..+
T Consensus 6 ~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~ 65 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARK 65 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 467788899999999999988642110001123356777777888889999999999876
No 320
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.48 E-value=6.7e+02 Score=31.71 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=42.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 303 LGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 303 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.......++++|++++|+..++...... ..........|..++..|+|++|...|.++
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 82 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKD-----PNDAEARFLLGKIYLALGDYAAAEKELRKA 82 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555667889999999998887642110 011234556799999999999999999874
No 321
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.44 E-value=1.4e+02 Score=38.29 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=75.5
Q ss_pred CCceeEEEEecccCceeeee--Cc--eEEEeCCCCccccc----------ccCCCCc--EEEEecCCCc--EEEEEECCe
Q 001851 75 KKPILSMEVLASRQLLLSLS--ES--IAFHRLPNLETIAV----------LTKAKGA--NVYSWDDRRG--FLCFARQKR 136 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~--d~--v~~~~L~~l~~~~~----------i~~~kg~--~~f~~~~~~~--~l~V~~kkk 136 (1004)
+.+|..+.+.+..-...|+. +| |.+|++.+|..... +..-|++ .+..+++... .++....++
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34777777777755555543 34 78888766532211 1111111 1223333221 233336777
Q ss_pred EEEEEecCCCceeEeeeeecCCCceEEEec--CCeEEEEEcCceEEEEcCCCCcccccCC---CCCCC-CEEEEccCCeE
Q 001851 137 VCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPS---GRIGP-PLVVSLLSGEL 210 (1004)
Q Consensus 137 i~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~---~~~~~-p~i~~~~~~E~ 210 (1004)
|.++...... + ....+.+--..++++|- |-.+++|..++-.+-=.-++++..-+|- -...+ -.|+|+...||
T Consensus 180 l~V~~~~~~~-~-~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLA-Q-NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhh-h-hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeE
Confidence 7777665311 1 11124444567889996 6688888887665544444443322221 11122 35899999999
Q ss_pred EEEeCCe
Q 001851 211 LLGKENI 217 (1004)
Q Consensus 211 Ll~~~~~ 217 (1004)
|+.+.+.
T Consensus 258 lvvy~n~ 264 (1405)
T KOG3630|consen 258 LVVYGNV 264 (1405)
T ss_pred EEEeccc
Confidence 9987653
No 322
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=47.78 E-value=4.1 Score=43.05 Aligned_cols=45 Identities=22% Similarity=0.455 Sum_probs=35.6
Q ss_pred ECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccC---CchhhhhhccCCC
Q 001851 953 ITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFR---DSQSMKAVAKGSP 1000 (1004)
Q Consensus 953 i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~---~~~~~~~~~~~~~ 1000 (1004)
++..-+|.+|+-.|..+. ..||| |-|++-|++ ..|.+||+-+.++
T Consensus 22 LDs~lrC~IC~~~i~ip~--~TtCg-HtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 22 LDSMLRCRICDCRISIPC--ETTCG-HTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred chhHHHhhhhhheeecce--ecccc-cchhHHHHHHHhcCCCCCccccccH
Confidence 344568999999987443 46999 999999998 4599999977653
No 323
>PF12854 PPR_1: PPR repeat
Probab=47.72 E-value=24 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.1
Q ss_pred cChHHHHHHHHhcCCHHHHHHHHhhC
Q 001851 301 VPLGAQIVQLTASGDFEEALALCKLL 326 (1004)
Q Consensus 301 ~~~~~qi~~Ll~~~~~eeAl~L~~~~ 326 (1004)
..+..-|..+.+.|++++|+.+++.+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45677799999999999999998764
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=47.59 E-value=30 Score=42.30 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-------------CCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHH
Q 001851 304 GAQIVQLTASGDFEEALALCKLL-------------PPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDIT 370 (1004)
Q Consensus 304 ~~qi~~Ll~~~~~eeAl~L~~~~-------------~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~ 370 (1004)
+..++-|+....|+.|++||..- +..|+.+..+..++|-.+.|..+..+|.|..|...|.+++--.+
T Consensus 1097 ekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~ 1176 (1416)
T KOG3617|consen 1097 EKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLS 1176 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHH
Confidence 44466677778889999998652 12233333345567888889999999999999999999863333
Q ss_pred HH
Q 001851 371 YA 372 (1004)
Q Consensus 371 ~v 372 (1004)
..
T Consensus 1177 AM 1178 (1416)
T KOG3617|consen 1177 AM 1178 (1416)
T ss_pred HH
Confidence 33
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=47.44 E-value=28 Score=25.00 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhh
Q 001851 549 YTALLELYKSNARHREALKLLHELVE 574 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~ 574 (1004)
+..|+.+|...|++++|++++.+...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 56799999999999999999987543
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=47.40 E-value=33 Score=23.57 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhh
Q 001851 549 YTALLELYKSNARHREALKLLHELVE 574 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~ 574 (1004)
|..++.+|...|++++|++.+.+..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67889999999999999999987543
No 327
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=47.30 E-value=4.1e+02 Score=32.20 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=54.5
Q ss_pred HHHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhcccCCCCccccccCCChHhHHHHhcccCC-CCchhHHhhchhhhccC
Q 001851 542 ILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCG-TDPMLVLEFSMLVLESC 620 (1004)
Q Consensus 542 ~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~yL~~L~~-~~~~li~~~~~wll~~~ 620 (1004)
.+.=.++|++.|.++...|.-.+||+++..+..- +.+-+|+..-.. +...|+.+-+.|--..+
T Consensus 641 ~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF----------------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~k 704 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF----------------DYAQEFLGSGDPKEKKMLIRKRADWARNIK 704 (1081)
T ss_pred HHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH----------------HHHHHHhhcCChHHHHHHHHHHHHHhhhcC
Confidence 3344688999999999999999999999876431 345667764332 23468889999988754
Q ss_pred -ccchhccccc
Q 001851 621 -PTQTIELFLS 630 (1004)
Q Consensus 621 -p~~~i~if~~ 630 (1004)
|..|-+++++
T Consensus 705 ePkaAAEmLiS 715 (1081)
T KOG1538|consen 705 EPKAAAEMLIS 715 (1081)
T ss_pred CcHHHHHHhhc
Confidence 7888888876
No 328
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=47.13 E-value=67 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=25.3
Q ss_pred CcEEEEEEeCCEEEEEeCCCcEEEEcCCCCC
Q 001851 17 PKIDAVASYGLKILLGCSDGSLKIYSPGSSE 47 (1004)
Q Consensus 17 ~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~ 47 (1004)
+....+...|+++||+..++-|.++++...+
T Consensus 2 G~a~~v~v~g~yaYva~~~~Gl~IvDISnPs 32 (42)
T PF08309_consen 2 GDARDVAVSGNYAYVADGNNGLVIVDISNPS 32 (42)
T ss_pred ceEEEEEEECCEEEEEeCCCCEEEEECCCCC
Confidence 4567889999999999887779999987543
No 329
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=47.05 E-value=3 Score=45.86 Aligned_cols=41 Identities=22% Similarity=0.564 Sum_probs=30.9
Q ss_pred CCcCCcCCCccCCc--EEEEcCCCCeEEEecccC-----Cchhhhhhcc
Q 001851 956 DSMCSLCSKKIGTS--VFAVYPNGKTIVHFVCFR-----DSQSMKAVAK 997 (1004)
Q Consensus 956 ~~~C~vC~k~l~~~--~f~v~p~~~~v~H~~C~~-----~~~~~~~~~~ 997 (1004)
+--|..||..+|.. -.--.||. |++|.+|+. +....||--+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCs-HIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCS-HIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchh-HHHHHHHHHHHHHhCCCCCCccHH
Confidence 45799999999975 35568998 999999986 3344555433
No 330
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=46.82 E-value=31 Score=23.45 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhc
Q 001851 549 YTALLELYKSNARHREALKLLHELVEE 575 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~~ 575 (1004)
|..++.-|.+.|++++|++++.+....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 778999999999999999999987654
No 331
>PF12854 PPR_1: PPR repeat
Probab=46.68 E-value=28 Score=24.59 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.9
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHH
Q 001851 548 HYTALLELYKSNARHREALKLLHE 571 (1004)
Q Consensus 548 ~~~~L~~Ly~~~g~~~~AL~ll~~ 571 (1004)
-|..|+.-|.+.|+.++|++++.+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 389999999999999999999875
No 332
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=46.56 E-value=3.4e+02 Score=32.19 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=68.3
Q ss_pred cccCCCCcEEEEecCCCcEEEE--E-ECCeEEEEEecCCCceeEeeeeecCCCceEEEec---CCeEEEEE----cCceE
Q 001851 110 VLTKAKGANVYSWDDRRGFLCF--A-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC---GENICIAI----RKGYM 179 (1004)
Q Consensus 110 ~i~~~kg~~~f~~~~~~~~l~V--~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~---~~~i~v~~----~~~y~ 179 (1004)
.+.+.-.++.++++.+....|| | .--++.||-.+ ++ .+ +.+|+.|+.-.++ |+.||+|- .....
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~---~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GK---PV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CC---Ee--EeCCCCCccceEECCCCCEEEEeecCCCCCceE
Confidence 3455567899999887654444 3 67889999877 32 11 4568888876555 67777662 35677
Q ss_pred EEEcCCCCcc-cccCCCCCCCCEEEEccCCeEEEEe--------CCeEEEEcCCCCcc
Q 001851 180 ILNATNGALS-EVFPSGRIGPPLVVSLLSGELLLGK--------ENIGVFVDQNGKLL 228 (1004)
Q Consensus 180 lidl~~~~~~-~L~~~~~~~~p~i~~~~~~E~Ll~~--------~~~gvfv~~~G~~~ 228 (1004)
+.|+.+.... .+-. .......|-+++|+++.. ||--=+.+.+|++.
T Consensus 340 vwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 7888773221 1111 123456788999998732 23223556677654
No 333
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=45.86 E-value=43 Score=30.41 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 306 QIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 306 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
....+.+.|++++|+..++....... .......+....|..++..+++++|..+|.+ ++..+|+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------~~~~~p~~ 109 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYP--KSPKAPDALLKLGMSLQELGDKEKAKATLQQ-------VIKRYPGS 109 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCC--CCCcccHHHHHHHHHHHHhCChHHHHHHHHH-------HHHHCcCC
Confidence 34567889999999999986421110 0011234567778899999999999999866 45666654
No 334
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=45.86 E-value=4.4e+02 Score=28.90 Aligned_cols=154 Identities=10% Similarity=0.068 Sum_probs=90.8
Q ss_pred cCCCCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCce
Q 001851 13 SNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL 90 (1004)
Q Consensus 13 ~~~~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~l 90 (1004)
..-++.|.++... |..+.-|..|-.|+.|++.+.... -+.+ ..++.+|..+.-.+..+.+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-------------~~~l-----kgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-------------FWVL-----KGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-------------eeee-----ccccceeEeeeeccCCCEE
Confidence 3445678776666 468899999999999998775431 1111 2468899999999999999
Q ss_pred eeeeC-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCCcEEEE-E-ECCeEEEEEecCCCceeEeeeeecCCCceEEEe
Q 001851 91 LSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRRGFLCF-A-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSW 165 (1004)
Q Consensus 91 l~l~d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~~~l~V-~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~ 165 (1004)
++++. . |.+|+..+-+.+.+. ...+-++..+.......++. + -.+.+.+|..... . .+|-+.-+-..++++|
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~--~~~t~~~kyqltAv~f 182 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-E--AIKTFENKYQLTAVGF 182 (338)
T ss_pred EEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-c--hhhccccceeEEEEEe
Confidence 99975 4 999997664433221 11122222222111122333 3 3456777765521 1 1122222345677888
Q ss_pred cC--C-eEEEEEcCceEEEEcCCCC
Q 001851 166 CG--E-NICIAIRKGYMILNATNGA 187 (1004)
Q Consensus 166 ~~--~-~i~v~~~~~y~lidl~~~~ 187 (1004)
.. + .++-|-.+...+-|+..+.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred cccccceeeccccCceeeeccccCc
Confidence 73 3 4555556677777775543
No 335
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=45.64 E-value=7 Score=41.87 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=27.6
Q ss_pred CcCCcCCCccCCcEEEEcCCCCeEEEecccCCch-hhhhhc
Q 001851 957 SMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQ-SMKAVA 996 (1004)
Q Consensus 957 ~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~~-~~~~~~ 996 (1004)
--|.-|+++|.---= +.||. |||++.|++... .+||.-
T Consensus 91 HfCd~Cd~PI~IYGR-mIPCk-HvFCl~CAr~~~dK~Cp~C 129 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGR-MIPCK-HVFCLECARSDSDKICPLC 129 (389)
T ss_pred EeecccCCcceeeec-ccccc-hhhhhhhhhcCccccCcCc
Confidence 469999999862111 25998 999999998654 577653
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=45.05 E-value=34 Score=23.13 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhc
Q 001851 550 TALLELYKSNARHREALKLLHELVEE 575 (1004)
Q Consensus 550 ~~L~~Ly~~~g~~~~AL~ll~~l~~~ 575 (1004)
..++.+|...|++++|+++|.++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45788899999999999999988653
No 337
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.04 E-value=7.4 Score=41.61 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=30.7
Q ss_pred CcCCcCCCcc-CCcEEEEcCCCCeEEEecccCC----chhhhhhcc
Q 001851 957 SMCSLCSKKI-GTSVFAVYPNGKTIVHFVCFRD----SQSMKAVAK 997 (1004)
Q Consensus 957 ~~C~vC~k~l-~~~~f~v~p~~~~v~H~~C~~~----~~~~~~~~~ 997 (1004)
--|++|=..+ -+..+.|.||. |.+|..|+.+ .--.|||-+
T Consensus 324 veCaICms~fiK~d~~~vlPC~-H~FH~~Cv~kW~~~y~~~CPvCr 368 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCD-HRFHVGCVDKWLLGYSNKCPVCR 368 (374)
T ss_pred ceEEEEhhhhcccceEEEeccC-ceechhHHHHHHhhhcccCCccC
Confidence 5699998764 45568889998 9999999864 345688754
No 338
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.82 E-value=8.4e+02 Score=31.81 Aligned_cols=284 Identities=15% Similarity=0.250 Sum_probs=136.0
Q ss_pred CEEEEEeCCCcEEEEcCCCCC--CCCCCCCcc--------cccccc--------cceeeeeecCCCCCceeEEEEecccC
Q 001851 27 LKILLGCSDGSLKIYSPGSSE--SDRSPPSDY--------QSLRKE--------SYELERTISGFSKKPILSMEVLASRQ 88 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~--~~~~~~~~~--------~~l~~~--------~~~~~~~~~~~~k~~I~qI~~l~~~~ 88 (1004)
.+|.++|.+|.+..|+..-.. +...+|.|. ..|.-. +.+...+. .+ ..+|..+...+...
T Consensus 362 ~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~-~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 362 LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-EL-PSPVNDVAFSPSNS 439 (928)
T ss_pred CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cC-CCCcEEEEEeCCCC
Confidence 589999999999666543221 112233332 222111 11111111 12 56899999998876
Q ss_pred -ceeeeeCc-eEEEeCCCCccc--------ccccC-----------CCCcEEEEecCCCcEEEEEE----CCeEEEEEec
Q 001851 89 -LLLSLSES-IAFHRLPNLETI--------AVLTK-----------AKGANVYSWDDRRGFLCFAR----QKRVCIFRHD 143 (1004)
Q Consensus 89 -~ll~l~d~-v~~~~L~~l~~~--------~~i~~-----------~kg~~~f~~~~~~~~l~V~~----kkki~l~~~~ 143 (1004)
++++.+|+ +.+|.++.-... ..+.. ......+++......+++.. ..++.++.+.
T Consensus 440 ~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 44555677 888885331100 00100 11122233332223333332 2467777775
Q ss_pred CCCceeEee-eeecCCCceEEEecCCe--EEEEEcCceEE-EEcCCCCcc-cccCCCCCCCCEEEEccCCe---EEEEeC
Q 001851 144 GGRGFVEVK-DFGVPDTVKSMSWCGEN--ICIAIRKGYMI-LNATNGALS-EVFPSGRIGPPLVVSLLSGE---LLLGKE 215 (1004)
Q Consensus 144 ~~~~f~~~k-Ei~l~d~~~~l~~~~~~--i~v~~~~~y~l-idl~~~~~~-~L~~~~~~~~p~i~~~~~~E---~Ll~~~ 215 (1004)
+...-.... ....+..+..+...++. +++-+..|-.+ ++....... .-||..+. .-.++.+++.+ .+++-.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~-~~~~~~~~~~~~~~~~~GLs 598 (928)
T PF04762_consen 520 DSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCP-WMEVCQINGSEDKRVLFGLS 598 (928)
T ss_pred cCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCc-EEEEEEECCccceeEEEEEC
Confidence 332211222 23334445555555432 55555544333 333332211 11232211 11244455555 666644
Q ss_pred Ce-EEEEcCCCCcccCcceeecCCCceEEEeCCeEEEEcCC-eeEEEEccCCCceeEEEeeCC----------ccccccC
Q 001851 216 NI-GVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPR-RVEVRSLRVPYALIQTIVLQN----------VRHLIPS 283 (1004)
Q Consensus 216 ~~-gvfv~~~G~~~~~~~i~w~~~P~~i~~~~PYll~~~~~-~ieV~~l~~~~~lvQti~l~~----------~~~l~~~ 283 (1004)
.. -+|+| |+ ......+++++...||+-.+.. .+...++. ..+..+..+. .|. ...
T Consensus 599 ~~~~Ly~n--~~-------~la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~---~~~~~l~~~~~~~~~~~de~~R~-VER 665 (928)
T PF04762_consen 599 SNGRLYAN--SR-------LLASNCTSFAVTDSFLLFTTTQHTLKFVHLN---SSVEDLEIPPDSPENSYDERCRR-VER 665 (928)
T ss_pred CCCEEEEC--CE-------EEecCCceEEEEcCEEEEEecCceEEEEECc---CchhhcccccCcccccccccccc-Ccc
Confidence 33 34443 22 2234567888888898877653 34544543 0112222211 111 122
Q ss_pred CCeEEEEeCC---eEEE--------ecccCh-HHHHHHHHhcCCHHHHHHHHhhC
Q 001851 284 SNAVVVALEN---SIFG--------LFPVPL-GAQIVQLTASGDFEEALALCKLL 326 (1004)
Q Consensus 284 ~~~v~vas~~---~i~~--------l~~~~~-~~qi~~Ll~~~~~eeAl~L~~~~ 326 (1004)
|..++.+.++ .|.+ +.|.++ -..|..++.+++|.+|+.+|+.+
T Consensus 666 GsriVt~vp~~~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 666 GSRIVTAVPSDTSVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred CCEEEEEeCCCceEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 3444443332 3333 344443 46789999999999999999875
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=44.60 E-value=57 Score=40.90 Aligned_cols=67 Identities=18% Similarity=0.389 Sum_probs=49.3
Q ss_pred CCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 16 SPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 16 ~~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
++..+|+++.+ ++|+||+.+|.|..|+-.+ ++..+ .+.++ +.||..|.+...+.-+|+-|
T Consensus 577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g---------------~~AKT---~lp~l-G~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRLG---------------KRAKT---ALPGL-GDPIIGIDVTADGKWILATC 637 (794)
T ss_pred CCCceEEEecCCceEEEEeCCCcEEeecccc---------------hhhhh---cCCCC-CCCeeEEEecCCCcEEEEee
Confidence 45788999887 6999999999999998322 11111 11233 67999999999999998888
Q ss_pred Cc-eEEEe
Q 001851 95 ES-IAFHR 101 (1004)
Q Consensus 95 d~-v~~~~ 101 (1004)
+. |.+++
T Consensus 638 ~tyLlLi~ 645 (794)
T PF08553_consen 638 KTYLLLID 645 (794)
T ss_pred cceEEEEE
Confidence 84 65555
No 340
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=44.47 E-value=2.1e+02 Score=32.78 Aligned_cols=110 Identities=13% Similarity=0.214 Sum_probs=68.4
Q ss_pred CCcEEEEEEe--CC-EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee
Q 001851 16 SPKIDAVASY--GL-KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 16 ~~~I~ci~~~--~~-~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~ 92 (1004)
+..|.|++.. +. -|.-|+.||+|..|++..- ..+... +. -++..|.|+.-.|...-+|+
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL-------------~~~lh~----~e-~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNL-------------NKPLHT----FE-GHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhc-------------ccCcee----cc-CCCcceEEEEeCCCCCceeE
Confidence 4578888775 33 5678888999999998752 222222 22 24779999999998877776
Q ss_pred eeC--c-eEEEeCCCCccccc----------c-----cCCCCcEEEEecCCCcE-EEEE-ECCeEEEEEec
Q 001851 93 LSE--S-IAFHRLPNLETIAV----------L-----TKAKGANVYSWDDRRGF-LCFA-RQKRVCIFRHD 143 (1004)
Q Consensus 93 l~d--~-v~~~~L~~l~~~~~----------i-----~~~kg~~~f~~~~~~~~-l~V~-~kkki~l~~~~ 143 (1004)
-+. + +.+|++........ + .-+-.++-|.+++.... ||-+ -...+.|++..
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 654 5 99999865321110 0 11223455666666553 3323 34556677765
No 341
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=44.39 E-value=13 Score=28.51 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=27.7
Q ss_pred CCCCcCCcCCCccCC---cEEEEcCCCCeEEEecccCCchhh
Q 001851 954 TSDSMCSLCSKKIGT---SVFAVYPNGKTIVHFVCFRDSQSM 992 (1004)
Q Consensus 954 ~~~~~C~vC~k~l~~---~~f~v~p~~~~v~H~~C~~~~~~~ 992 (1004)
...+.|.+|++.|.. ..+-.-.|+ .++|..|.......
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~~C~~C~-~~~H~~C~~~v~~~ 49 (50)
T cd00029 9 FKPTFCDVCRKSIWGLFKQGLRCSWCK-VKCHKKCADKVPPS 49 (50)
T ss_pred CCCCChhhcchhhhccccceeEcCCCC-CchhhhhhccCCCC
Confidence 356789999999875 334434577 89999999875543
No 342
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=44.31 E-value=5.2e+02 Score=29.29 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=111.3
Q ss_pred EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eE
Q 001851 21 AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IA 98 (1004)
Q Consensus 21 ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~ 98 (1004)
.....++.||+|+.+|.|+.++..... ..|.. . +.. .+..=.++. .+.+++-+ ++ +.
T Consensus 60 ~p~v~~~~v~v~~~~g~v~a~d~~tG~--------------~~W~~--~---~~~-~~~~~p~v~-~~~v~v~~~~g~l~ 118 (377)
T TIGR03300 60 QPAVAGGKVYAADADGTVVALDAETGK--------------RLWRV--D---LDE-RLSGGVGAD-GGLVFVGTEKGEVI 118 (377)
T ss_pred ceEEECCEEEEECCCCeEEEEEccCCc--------------Eeeee--c---CCC-CcccceEEc-CCEEEEEcCCCEEE
Confidence 446678999999999999999854321 12221 0 101 111101122 34444433 34 77
Q ss_pred EEeCCCCcccccccCCCC-cEE-EEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCc------eEEEecCCe
Q 001851 99 FHRLPNLETIAVLTKAKG-ANV-YSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTV------KSMSWCGEN 169 (1004)
Q Consensus 99 ~~~L~~l~~~~~i~~~kg-~~~-f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~------~~l~~~~~~ 169 (1004)
.++..+-+.+-... ..+ +.. -.+. .+.++++ ....|..+....|+... ++..+.++ .+....++.
T Consensus 119 ald~~tG~~~W~~~-~~~~~~~~p~v~--~~~v~v~~~~g~l~a~d~~tG~~~W---~~~~~~~~~~~~~~~sp~~~~~~ 192 (377)
T TIGR03300 119 ALDAEDGKELWRAK-LSSEVLSPPLVA--NGLVVVRTNDGRLTALDAATGERLW---TYSRVTPALTLRGSASPVIADGG 192 (377)
T ss_pred EEECCCCcEeeeec-cCceeecCCEEE--CCEEEEECCCCeEEEEEcCCCceee---EEccCCCceeecCCCCCEEECCE
Confidence 77764433221110 111 000 0111 2345554 44556555554343211 11111111 122334667
Q ss_pred EEEEEc-CceEEEEcCCCCcccccC----CCC---------CCCCEEEEccCCeEEEE-eCCeEEEEcC-CCCcccCcce
Q 001851 170 ICIAIR-KGYMILNATNGALSEVFP----SGR---------IGPPLVVSLLSGELLLG-KENIGVFVDQ-NGKLLQADRI 233 (1004)
Q Consensus 170 i~v~~~-~~y~lidl~~~~~~~L~~----~~~---------~~~p~i~~~~~~E~Ll~-~~~~gvfv~~-~G~~~~~~~i 233 (1004)
++++.. ....-+|..+|....-.+ .+. ...|.+ .++.++++ .++....+|. +| .+
T Consensus 193 v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG------~~ 263 (377)
T TIGR03300 193 VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSG------RV 263 (377)
T ss_pred EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCC------cE
Confidence 888876 456778999986532111 110 112333 24444443 3444444554 44 34
Q ss_pred eecCC---CceEEEeCCeEEEEcC-CeeEEEEccCCCceeEEE-eeCCcc--ccccCCCeEEEEe-CCeEEEecc
Q 001851 234 CWSEA---PIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTI-VLQNVR--HLIPSSNAVVVAL-ENSIFGLFP 300 (1004)
Q Consensus 234 ~w~~~---P~~i~~~~PYll~~~~-~~ieV~~l~~~~~lvQti-~l~~~~--~l~~~~~~v~vas-~~~i~~l~~ 300 (1004)
.|... +...+...-+|++... +.+...+.. ++..+-.. .+.... .....++.+|+.+ +..|+++..
T Consensus 264 ~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~-tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 264 LWKRDASSYQGPAVDDNRLYVTDADGVVVALDRR-SGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EEeeccCCccCceEeCCEEEEECCCCeEEEEECC-CCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 45432 2234455677777765 567777775 46554333 222211 1111344555443 455666554
No 343
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=43.85 E-value=39 Score=23.04 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhh
Q 001851 549 YTALLELYKSNARHREALKLLHELVE 574 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~ 574 (1004)
+..++.+|...|++++|++.+.+...
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56789999999999999999987653
No 344
>KOG4328 consensus WD40 protein [Function unknown]
Probab=43.81 E-value=2.4e+02 Score=32.55 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=73.6
Q ss_pred cEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceee-e
Q 001851 18 KIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLS-L 93 (1004)
Q Consensus 18 ~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~-l 93 (1004)
+|+.++..- ..|.-|..|++..+|++..-... ... +... --++++|..-...|...-|++ +
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K------------~sp-~lst--~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK------------ASP-FLST--LPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCC------------CCc-ceec--ccccceeeeeEEcCCCCceEeec
Confidence 899998875 57899999999999998753321 111 2211 135789999999998866554 4
Q ss_pred eCc-eEEEeCC----CCcccccccCC----CCcEEE--EecCCCcEEEEE-ECCeEEEEEecCC
Q 001851 94 SES-IAFHRLP----NLETIAVLTKA----KGANVY--SWDDRRGFLCFA-RQKRVCIFRHDGG 145 (1004)
Q Consensus 94 ~d~-v~~~~L~----~l~~~~~i~~~----kg~~~f--~~~~~~~~l~V~-~kkki~l~~~~~~ 145 (1004)
.|. |.+|+-. .+++...|... +-.+-| .++++...|+|+ ..++|-+|.-.++
T Consensus 389 ~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 389 QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 464 9999863 34444333211 222333 457766777887 6788988886644
No 345
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.72 E-value=6.7 Score=44.79 Aligned_cols=43 Identities=14% Similarity=0.366 Sum_probs=32.7
Q ss_pred ECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccCC---chhhhhhccC
Q 001851 953 ITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRD---SQSMKAVAKG 998 (1004)
Q Consensus 953 i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~---~~~~~~~~~~ 998 (1004)
+...-.|++|...+..++ +.||| |.|+..|+.. ....||+-+.
T Consensus 23 Le~~l~C~IC~d~~~~Pv--itpCg-H~FCs~CI~~~l~~~~~CP~Cr~ 68 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPV--LTSCS-HTFCSLCIRRCLSNQPKCPLCRA 68 (397)
T ss_pred cccccCCCcCchhhhCcc--CCCCC-CchhHHHHHHHHhCCCCCCCCCC
Confidence 556789999999887664 47999 9999999973 2346776554
No 346
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=43.09 E-value=4.9e+02 Score=28.62 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCceEEEe
Q 001851 22 VASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHR 101 (1004)
Q Consensus 22 i~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~v~~~~ 101 (1004)
++..|++-|+..-+|-|.+-++....++ .+...... ...+....+.++...+++..+++...+
T Consensus 177 v~ISGn~AYvA~~d~GL~ivDVSnp~sP---------------vli~~~n~--g~g~~sv~vsdnr~y~vvy~egvlivd 239 (370)
T COG5276 177 VAISGNYAYVAWRDGGLTIVDVSNPHSP---------------VLIGSYNT--GPGTYSVSVSDNRAYLVVYDEGVLIVD 239 (370)
T ss_pred EEEecCeEEEEEeCCCeEEEEccCCCCC---------------eEEEEEec--CCceEEEEecCCeeEEEEcccceEEEe
Q ss_pred CCCCcccccccCCCCcEEEEe---cCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCC-CceEEEecCCeEEEEEcC
Q 001851 102 LPNLETIAVLTKAKGANVYSW---DDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPD-TVKSMSWCGENICIAIRK 176 (1004)
Q Consensus 102 L~~l~~~~~i~~~kg~~~f~~---~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d-~~~~l~~~~~~i~v~~~~ 176 (1004)
.++.+....+......+..++ -.......|+ ..+.+.+..+.+-..-.....+.+++ ..+.+...|+.+|++.++
T Consensus 240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn 319 (370)
T COG5276 240 VSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN 319 (370)
T ss_pred cCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCC
Q ss_pred ceEEEEcCCCCcccccC
Q 001851 177 GYMILNATNGALSEVFP 193 (1004)
Q Consensus 177 ~y~lidl~~~~~~~L~~ 193 (1004)
...+++....+...+.+
T Consensus 320 ~g~vV~~s~~s~m~~~~ 336 (370)
T COG5276 320 TGAVVDASPPSMMDKRP 336 (370)
T ss_pred ceEEEeCCChhhccccc
No 347
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=42.84 E-value=6.1e+02 Score=29.62 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=62.6
Q ss_pred eeEEEEecccCceeeeeCc--eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeee
Q 001851 78 ILSMEVLASRQLLLSLSES--IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF 154 (1004)
Q Consensus 78 I~qI~~l~~~~~ll~l~d~--v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi 154 (1004)
-.+|...++ ..++-.-|+ +.+|+..+-+........-++-.+.++.+...++|+ -+-.|.++.++.|+ .+.+ +-
T Consensus 364 Y~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~i-dk 440 (668)
T COG4946 364 YRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLI-DK 440 (668)
T ss_pred EEEEccCCc-ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEe-cc
Confidence 345555554 222223344 889987665422222223333344555543446665 34456777777553 2221 22
Q ss_pred ecCCCceEEEecC--CeEEEEEcCceE-----EEEcCCCCcccccC
Q 001851 155 GVPDTVKSMSWCG--ENICIAIRKGYM-----ILNATNGALSEVFP 193 (1004)
Q Consensus 155 ~l~d~~~~l~~~~--~~i~v~~~~~y~-----lidl~~~~~~~L~~ 193 (1004)
+--+-++.+.|.. .+|.+|...+|+ ++|+.++.+..+-+
T Consensus 441 S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 441 SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 2345678899984 588888888875 46777776665543
No 348
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=42.72 E-value=4.8e+02 Score=30.39 Aligned_cols=106 Identities=16% Similarity=0.329 Sum_probs=67.5
Q ss_pred EEEeCCEEEEEeCCC-cEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeCc--eE
Q 001851 22 VASYGLKILLGCSDG-SLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSES--IA 98 (1004)
Q Consensus 22 i~~~~~~L~iGt~~G-~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d~--v~ 98 (1004)
+-+-++.+.|||.|| .|-+|+..... ..+.... -..|..+.+.+....+++-.|. +.
T Consensus 367 ~~~~~e~~vigt~dgD~l~iyd~~~~e------------------~kr~e~~--lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 367 IQVDPEGDVIGTNDGDKLGIYDKDGGE------------------VKRIEKD--LGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred EccCCcceEEeccCCceEEEEecCCce------------------EEEeeCC--ccceEEEEEcCCCcEEEEEcCceEEE
Confidence 444456899999999 78888766432 1111112 2478888888876666666664 88
Q ss_pred EEeCCCCcccccccCCC--CcEEEEecCCCcEEEEE-----ECCeEEEEEecCCCce
Q 001851 99 FHRLPNLETIAVLTKAK--GANVYSWDDRRGFLCFA-----RQKRVCIFRHDGGRGF 148 (1004)
Q Consensus 99 ~~~L~~l~~~~~i~~~k--g~~~f~~~~~~~~l~V~-----~kkki~l~~~~~~~~f 148 (1004)
++++.+-.+ ..+.+.+ -++-|+++++...++-+ ..+.|.+|...+++.+
T Consensus 427 vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 427 VIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 888876432 2223333 35668888877777776 4567888887754433
No 349
>PF13041 PPR_2: PPR repeat family
Probab=42.26 E-value=38 Score=26.00 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhccc
Q 001851 549 YTALLELYKSNARHREALKLLHELVEESK 577 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~ 577 (1004)
|..|..-|.+.|+.++|++++.+..+...
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999876544
No 350
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=41.99 E-value=2.1e+02 Score=35.94 Aligned_cols=102 Identities=13% Similarity=0.218 Sum_probs=63.6
Q ss_pred EEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC---
Q 001851 19 IDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--- 95 (1004)
Q Consensus 19 I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--- 95 (1004)
|+=+...+.+++.|...|.+..-+... +..++++..+ ...|..+.+- .|+|++++=
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s------------------~~~iht~~aH-s~siSDfDv~--GNlLitCG~S~R 238 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNS------------------FETIHTFDAH-SGSISDFDVQ--GNLLITCGYSMR 238 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCc------------------Cceeeeeecc-ccceeeeecc--CCeEEEeecccc
Confidence 444555567999999999987765432 3344444433 3466666553 588887742
Q ss_pred -------c-eEEEeCCCCcccccccCCCCcEEEEecCCC-cEEEEE-ECCeEEEEE
Q 001851 96 -------S-IAFHRLPNLETIAVLTKAKGANVYSWDDRR-GFLCFA-RQKRVCIFR 141 (1004)
Q Consensus 96 -------~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~-~~l~V~-~kkki~l~~ 141 (1004)
. |.||+|..++.+..++-..|..+.-+.+.- .++||+ .-+...+..
T Consensus 239 ~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 239 RYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred cccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecc
Confidence 1 789998777766666666666665555543 467776 334444444
No 351
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.67 E-value=1e+02 Score=39.59 Aligned_cols=131 Identities=11% Similarity=0.149 Sum_probs=72.0
Q ss_pred CEEEEEeCCCc-EEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEE--ec--ccCceeeeeCc-eEEE
Q 001851 27 LKILLGCSDGS-LKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEV--LA--SRQLLLSLSES-IAFH 100 (1004)
Q Consensus 27 ~~L~iGt~~G~-l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~--l~--~~~~ll~l~d~-v~~~ 100 (1004)
...++-|++|. |+.|++..-.... .....+.+......-+++.++.. .| ..+.+++|+|. |.|.
T Consensus 114 ~s~v~~tsng~~v~~fD~~~fs~s~----------~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~ 183 (1405)
T KOG3630|consen 114 DSVVVSTSNGEAVYSFDLEEFSESR----------YETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVK 183 (1405)
T ss_pred eEEEEEecCCceEEEEehHhhhhhh----------hhhccccccccchhccccccccccccCCccchhhhhccccchhhh
Confidence 35677777775 4667776543321 00011111111111334444432 22 34667788884 7666
Q ss_pred eCCCCcc-cccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeec-----CCCceEEEecCCeEE
Q 001851 101 RLPNLET-IAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGV-----PDTVKSMSWCGENIC 171 (1004)
Q Consensus 101 ~L~~l~~-~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l-----~d~~~~l~~~~~~i~ 171 (1004)
.+....+ +.+.+..+.++++||.++.-+++|+ ..+++.-|+-. . ...++|.- +..|.+++|.+++.+
T Consensus 184 ~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-l---eik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 184 STKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-L---EIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-c---ceeecccCCCcCCCcceeEEEEecceeE
Confidence 6544332 2345667788999999877778888 55677666654 1 11123322 357889999987543
No 352
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=41.25 E-value=52 Score=31.04 Aligned_cols=55 Identities=27% Similarity=0.354 Sum_probs=34.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.+-..|++++|+.+++....+. ..+..-..++.-+|..|+..|+.++|+..+...
T Consensus 47 tlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 47 TLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3556788888888887532110 001122345566778888888888888887653
No 353
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=41.00 E-value=3.3e+02 Score=33.12 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=80.6
Q ss_pred CCcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcc-----ccccccc---------------ceeeeeecCCC
Q 001851 16 SPKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDY-----QSLRKES---------------YELERTISGFS 74 (1004)
Q Consensus 16 ~~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~-----~~l~~~~---------------~~~~~~~~~~~ 74 (1004)
...|+|+...+ ..|.=|+=|.+..+|.+.+-... -.++.+ ..|+... -++.+++.+ |
T Consensus 101 ~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~g-H 178 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSG-H 178 (745)
T ss_pred ccceeeeecCCcCceEecccccceEEecchhhhcc-cCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhcc-c
Confidence 35677777554 35677777777777776653221 000100 0111100 012233333 4
Q ss_pred CCceeEEEEecccCceeeeeCc-eEEEeCCCCcccccccCCCCcEE--EEecC-CCcE--EEEEECCeEEEEEecCCCce
Q 001851 75 KKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANV--YSWDD-RRGF--LCFARQKRVCIFRHDGGRGF 148 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d~-v~~~~L~~l~~~~~i~~~kg~~~--f~~~~-~~~~--l~V~~kkki~l~~~~~~~~f 148 (1004)
..-|.-+.+++...++=+=.|| |..|++.. +.+ ....|-+. |+++. ..+. ++.+-.+++.+|..+
T Consensus 179 tD~VRgL~vl~~~~flScsNDg~Ir~w~~~g-e~l---~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----- 249 (745)
T KOG0301|consen 179 TDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG-EVL---LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----- 249 (745)
T ss_pred hhheeeeEEecCCCeEeecCCceEEEEeccC-cee---eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----
Confidence 5688899999875544433456 89999833 222 22233333 34442 1233 344567888888755
Q ss_pred eEeeeeecCCC-ceEEE-ecCCeEEEEEcCceEEE
Q 001851 149 VEVKDFGVPDT-VKSMS-WCGENICIAIRKGYMIL 181 (1004)
Q Consensus 149 ~~~kEi~l~d~-~~~l~-~~~~~i~v~~~~~y~li 181 (1004)
.....|.+|.+ +=+.. |.++-|++|+..+..-+
T Consensus 250 e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrV 284 (745)
T KOG0301|consen 250 ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRV 284 (745)
T ss_pred ceEEEEecCccceEEEEEeeCCCEEEeccCceEEE
Confidence 23456788874 33333 33667777777665443
No 354
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=40.53 E-value=39 Score=38.57 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhh
Q 001851 305 AQIVQLTASGDFEEALALCKL 325 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~ 325 (1004)
.+...++..|+|++|+.+++.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~ 27 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQ 27 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 444555555666666655543
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=40.52 E-value=52 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEc
Q 001851 16 SPKIDAVASYG--LKILLGCSDGSLKIYS 42 (1004)
Q Consensus 16 ~~~I~ci~~~~--~~L~iGt~~G~l~~y~ 42 (1004)
...|.|+.... +.++.|+.+|.+.+|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45788887764 5889999999998874
No 356
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.80 E-value=12 Score=38.77 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=30.7
Q ss_pred CCCcCCcCCCccCCcE-EEE-cCCCCeEEEecccCC---chhhhhhcc
Q 001851 955 SDSMCSLCSKKIGTSV-FAV-YPNGKTIVHFVCFRD---SQSMKAVAK 997 (1004)
Q Consensus 955 ~~~~C~vC~k~l~~~~-f~v-~p~~~~v~H~~C~~~---~~~~~~~~~ 997 (1004)
....|++|+-.|.+.+ ++| -|+| |||.+.|+.. .-..|||++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg-~Vv~~ecvEklir~D~v~pv~d 266 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSG-HVVTKECVEKLIRKDMVDPVTD 266 (303)
T ss_pred cceecccchhhhcCccceEEeccCC-cEeeHHHHHHhccccccccCCC
Confidence 3457999999999854 444 5998 9999999863 245566654
No 357
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=39.61 E-value=3.7e+02 Score=31.45 Aligned_cols=149 Identities=13% Similarity=0.209 Sum_probs=82.1
Q ss_pred CcEEEEEEeC---CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCC-CCCceeEEEEecccCceee
Q 001851 17 PKIDAVASYG---LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGF-SKKPILSMEVLASRQLLLS 92 (1004)
Q Consensus 17 ~~I~ci~~~~---~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~k~~I~qI~~l~~~~~ll~ 92 (1004)
+.|.|..+.. .++|-|..-| |.+|++.+..+. .+ +.+..-. ...-|...+++|+..-|++
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~k-----------~P----vsqLdcl~rdnyiRSckL~pdgrtLiv 482 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGNK-----------SP----VSQLDCLNRDNYIRSCKLLPDGRTLIV 482 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCe-EEEeeccCCCCC-----------Cc----cccccccCcccceeeeEecCCCceEEe
Confidence 4566666554 5888887766 899998875321 00 1111111 1346778888888877777
Q ss_pred eeC-c-eEEEeCCCCccc--ccccCCCCcEEEE--ecCCCcEEEE--EECCeEEEEEecCCCceeEeeeee-cCCCceEE
Q 001851 93 LSE-S-IAFHRLPNLETI--AVLTKAKGANVYS--WDDRRGFLCF--ARQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSM 163 (1004)
Q Consensus 93 l~d-~-v~~~~L~~l~~~--~~i~~~kg~~~f~--~~~~~~~l~V--~~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l 163 (1004)
=.+ . |++|+|.+-.+. ..+ ..-+..|++ ++++. .+|. .+.+.|.+|.+.+- ..++.+. -+|.+.+|
T Consensus 483 GGeastlsiWDLAapTprikael-tssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq---~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCI 557 (705)
T ss_pred ccccceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccc---eeeecccCCCCCceeE
Confidence 666 2 999998542211 111 122233444 44443 3443 37788889888731 1223332 36777777
Q ss_pred Eec--CCeEEEEEc-CceEEEEcCCC
Q 001851 164 SWC--GENICIAIR-KGYMILNATNG 186 (1004)
Q Consensus 164 ~~~--~~~i~v~~~-~~y~lidl~~~ 186 (1004)
... |..|.-|-- +-..--|+.+|
T Consensus 558 dis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhh
Confidence 665 445554432 33333455554
No 358
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.56 E-value=51 Score=22.45 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.1
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHHhh
Q 001851 548 HYTALLELYKSNARHREALKLLHELVE 574 (1004)
Q Consensus 548 ~~~~L~~Ly~~~g~~~~AL~ll~~l~~ 574 (1004)
.|+.++..|.+.|+++.|++++....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988765
No 359
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=38.96 E-value=9.9 Score=30.19 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=6.6
Q ss_pred CcCCcCCCccCC
Q 001851 957 SMCSLCSKKIGT 968 (1004)
Q Consensus 957 ~~C~vC~k~l~~ 968 (1004)
..||+|+++|+.
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999999974
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.81 E-value=1.2e+02 Score=36.40 Aligned_cols=90 Identities=16% Similarity=0.277 Sum_probs=63.8
Q ss_pred CCceeEEEEecccCceeeeeC-c-eEEEeCCCCccccccc-CCCCcE-EEEecCCCcEEEEE-ECCeEEEEEecCCCcee
Q 001851 75 KKPILSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVLT-KAKGAN-VYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFV 149 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~l~~~~~i~-~~kg~~-~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~ 149 (1004)
...|..+.--|...++...++ | |.+|++. ..-+-+++ ...+++ +.|++++...|+|| ..++|.|.....+....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 347888888888898888776 6 9999987 44454554 556666 89999987779998 77899999876443222
Q ss_pred EeeeeecCCCceEEEec
Q 001851 150 EVKDFGVPDTVKSMSWC 166 (1004)
Q Consensus 150 ~~kEi~l~d~~~~l~~~ 166 (1004)
. .-++..+.+..+.|.
T Consensus 99 ~-~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 S-FLFSVETDISKGIWD 114 (665)
T ss_pred c-cccccccchheeecc
Confidence 2 124445667777775
No 361
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=38.60 E-value=8.3e+02 Score=29.96 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=121.0
Q ss_pred ccccccccCCCCcEEEEEEeCC-EEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeE-EEE
Q 001851 6 FDSLELISNCSPKIDAVASYGL-KILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILS-MEV 83 (1004)
Q Consensus 6 f~~~~l~~~~~~~I~ci~~~~~-~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~q-I~~ 83 (1004)
|.+...+..=+..+..++.-.+ .+.=|+.||++.+|.-.+.. |.-...+.+. +.=|.- +..
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~----------------~l~~~~~~~~-~g~i~~~i~y 66 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQ----------------YLETHAFEGP-KGFIANSICY 66 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcc----------------cccceecccC-cceeecccee
Confidence 3444444444445544444443 57777889999999754422 1111111111 111222 444
Q ss_pred eccc-Cceee-eeCc-eEEEeCCCCcccccccCCC-CcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeee-ecC
Q 001851 84 LASR-QLLLS-LSES-IAFHRLPNLETIAVLTKAK-GANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDF-GVP 157 (1004)
Q Consensus 84 l~~~-~~ll~-l~d~-v~~~~L~~l~~~~~i~~~k-g~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi-~l~ 157 (1004)
.+.. ..+++ .-|. +.+|.+.+.+|...+..-+ ++.+...+.+ +.++-+ -.+...+++.+. ... +. .-+
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~-~~~iSgSWD~TakvW~~~~---l~~--~l~gH~ 140 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED-GTLISGSWDSTAKVWRIGE---LVY--SLQGHT 140 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc-CceEecccccceEEecchh---hhc--ccCCcc
Confidence 4422 22332 2354 8899998888877653333 2333333332 323222 344455555432 100 00 001
Q ss_pred CCceEEEecCCe-EEEEEcCceEEEEcCCC-CcccccCCCCCCCCEEEEccCCeEEEEe-CCeEEEEcCCCCcccCccee
Q 001851 158 DTVKSMSWCGEN-ICIAIRKGYMILNATNG-ALSEVFPSGRIGPPLVVSLLSGELLLGK-ENIGVFVDQNGKLLQADRIC 234 (1004)
Q Consensus 158 d~~~~l~~~~~~-i~v~~~~~y~lidl~~~-~~~~L~~~~~~~~p~i~~~~~~E~Ll~~-~~~gvfv~~~G~~~~~~~i~ 234 (1004)
-.+-++...+.. ++-|+.. ..|-+..| .....|.-......-++.+++.+||=|. |+...+.+.+|....+
T Consensus 141 asVWAv~~l~e~~~vTgsaD--KtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~---- 214 (745)
T KOG0301|consen 141 ASVWAVASLPENTYVTGSAD--KTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLE---- 214 (745)
T ss_pred hheeeeeecCCCcEEeccCc--ceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeee----
Confidence 123333333322 2222221 22333333 3333343222222335567888998775 4556677888876532
Q ss_pred ecCCCc---eE--EEeCCeEEEEcC-CeeEEEEccCCCceeEEEeeCCccccc---cCCCeEEE-EeCCeEEEeccc
Q 001851 235 WSEAPI---AV--IIQKPYAIALLP-RRVEVRSLRVPYALIQTIVLQNVRHLI---PSSNAVVV-ALENSIFGLFPV 301 (1004)
Q Consensus 235 w~~~P~---~i--~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~l~~~~~l~---~~~~~v~v-as~~~i~~l~~~ 301 (1004)
..+.-. ++ +...-.|+.-.+ +.+.|... ...+|+|.+|....=. -.++.+++ +|++-|+.+...
T Consensus 215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~---~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK---DECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeccceEEEEEEecCCCCeEEEecCCceEEEeec---CceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 111100 11 111223333333 45777765 3789999999853221 22344444 455555555443
No 362
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=38.47 E-value=47 Score=24.74 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhc
Q 001851 549 YTALLELYKSNARHREALKLLHELVEE 575 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~~ 575 (1004)
+..|+..|...|++++|.+++.+....
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567999999999999999999987653
No 363
>PRK01742 tolB translocation protein TolB; Provisional
Probab=37.60 E-value=7.2e+02 Score=28.95 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=66.6
Q ss_pred eEEEEecccCceeeee--Cc---eEEEeCCCCcccccccCCC-CcEEEEecCCCcEEEEEE--CCeEEEEEecCCCceeE
Q 001851 79 LSMEVLASRQLLLSLS--ES---IAFHRLPNLETIAVLTKAK-GANVYSWDDRRGFLCFAR--QKRVCIFRHDGGRGFVE 150 (1004)
Q Consensus 79 ~qI~~l~~~~~ll~l~--d~---v~~~~L~~l~~~~~i~~~k-g~~~f~~~~~~~~l~V~~--kkki~l~~~~~~~~f~~ 150 (1004)
..+...|....|++.+ ++ |.++++.+-+ ...+.... .....+++++...|+.+. .....||.+..+..-..
T Consensus 251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 3566777777666554 34 4455554322 12222222 234466677655666554 34677888753211111
Q ss_pred eeeeecCCCceEEEec--CCeEEEEEcCceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEE
Q 001851 151 VKDFGVPDTVKSMSWC--GENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLG 213 (1004)
Q Consensus 151 ~kEi~l~d~~~~l~~~--~~~i~v~~~~~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~ 213 (1004)
. +.... .+..|. |+.|+++...+..++|+.+|....+........| .+-+++++++.
T Consensus 330 ~--l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~--~~sPdG~~i~~ 388 (429)
T PRK01742 330 L--VGGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESP--SISPNGIMIIY 388 (429)
T ss_pred E--ecCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCc--eECCCCCEEEE
Confidence 1 11111 234565 5677777777777789999876655432221222 24567776653
No 364
>PRK04922 tolB translocation protein TolB; Provisional
Probab=37.35 E-value=7.3e+02 Score=28.94 Aligned_cols=141 Identities=17% Similarity=0.256 Sum_probs=71.6
Q ss_pred EEEEecccCceee-eeC-c---eEEEeCCCCcccccccCCCC-cEEEEecCCCcEEEEEECC--eEEEEEecC-CCceeE
Q 001851 80 SMEVLASRQLLLS-LSE-S---IAFHRLPNLETIAVLTKAKG-ANVYSWDDRRGFLCFARQK--RVCIFRHDG-GRGFVE 150 (1004)
Q Consensus 80 qI~~l~~~~~ll~-l~d-~---v~~~~L~~l~~~~~i~~~kg-~~~f~~~~~~~~l~V~~kk--ki~l~~~~~-~~~f~~ 150 (1004)
.....|+...+++ .+. + |.++++.+-+ ...+....+ ...++++++...|+++..+ ...+|.+.- +.....
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 4566677765544 432 3 8888875533 222222222 2345677766666666433 455666642 222222
Q ss_pred eeeeecC-CCceEEEec--CCeEEEEEcC--c--eEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEE-EeC---C-eE
Q 001851 151 VKDFGVP-DTVKSMSWC--GENICIAIRK--G--YMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL-GKE---N-IG 218 (1004)
Q Consensus 151 ~kEi~l~-d~~~~l~~~--~~~i~v~~~~--~--y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll-~~~---~-~g 218 (1004)
+... ....+.+|. |+.|+++... . -.++|+.++....+...+....| .+.+++.+++ ..+ . ..
T Consensus 331 ---lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p--~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 331 ---LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP--SFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred ---eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc--eECCCCCEEEEEEecCCceEE
Confidence 2222 233456776 6788877542 2 45778888877655432211223 3456666544 332 1 22
Q ss_pred EEEcCCCC
Q 001851 219 VFVDQNGK 226 (1004)
Q Consensus 219 vfv~~~G~ 226 (1004)
..++.+|.
T Consensus 406 ~~~~~~g~ 413 (433)
T PRK04922 406 AAVSTDGR 413 (433)
T ss_pred EEEECCCC
Confidence 33466664
No 365
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=37.27 E-value=47 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhc
Q 001851 344 RFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 344 ~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
..|..+...|+|++|+++|.++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4588899999999999999873
No 366
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=37.19 E-value=45 Score=31.46 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 307 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
...++..|++++|+..++.....+ ..-.......|..++..++|++|...|.++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-----PYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778999999999987642111 112345566789999999999999999775
No 367
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.48 E-value=73 Score=33.43 Aligned_cols=59 Identities=27% Similarity=0.262 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001851 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAK--EGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (1004)
Q Consensus 304 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~--~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (1004)
.-||..+++.|++++|+.++.+..++ -++.+. .-.++++-..-+.++|.-++|++.+..
T Consensus 68 R~~Ir~~I~~G~Ie~Aie~in~l~Pe--iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 68 RLQIRRAIEEGQIEEAIEKVNQLNPE--ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHhccHHHHHHHHHHhChH--HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45789999999999999999987532 233332 345566667778899999999998876
No 368
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.47 E-value=3.5e+02 Score=30.41 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=47.5
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c-eEEEeCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRLPN 104 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~ 104 (1004)
+.+..|..||+|.+|++.-. .+..+..+ +..-|..+.+-|.+..++.++| + +.+|++.+
T Consensus 305 ~~l~s~SrDktIk~wdv~tg------------------~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTG------------------MCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred cEEEeecccceEEEEeccCC------------------eEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 58999999999999997631 22223222 3567999999999999999998 4 99999876
Q ss_pred Cc
Q 001851 105 LE 106 (1004)
Q Consensus 105 l~ 106 (1004)
..
T Consensus 366 ~~ 367 (406)
T KOG0295|consen 366 LQ 367 (406)
T ss_pred ce
Confidence 54
No 369
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=35.58 E-value=51 Score=37.60 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.++..|++++|+..++....-+ ......+.+.|..++..|+|++|...|.++
T Consensus 45 ~~~~~g~~~eAl~~~~~Al~l~-----P~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 45 ANIKLGNFTEAVADANKAIELD-----PSLAKAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556667777776665431100 011233455566666667777777766553
No 370
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=35.08 E-value=21 Score=27.72 Aligned_cols=30 Identities=17% Similarity=0.522 Sum_probs=21.7
Q ss_pred CcCCcCCCccCCcEEEEcCCCCeEEEecccC
Q 001851 957 SMCSLCSKKIGTSVFAVYPNGKTIVHFVCFR 987 (1004)
Q Consensus 957 ~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~ 987 (1004)
.+|.+|.+|+.....+..|.| .+.--.|..
T Consensus 2 ~iCvvCK~Pi~~al~v~T~~G-pvh~g~C~~ 31 (53)
T PHA02610 2 KICVVCKQPIEKALVVETEKG-PVHPGPCYN 31 (53)
T ss_pred ceeeeeCCchhhceEEecCCC-CCCChhHHH
Confidence 589999999976666768888 343345654
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=35.03 E-value=4.9e+02 Score=29.34 Aligned_cols=149 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEE--------CCeEEEEEecCCCceeEeeeeecCCCceEEEec--
Q 001851 97 IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFAR--------QKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC-- 166 (1004)
Q Consensus 97 v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~--------kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~-- 166 (1004)
+.+++-.+.+.+..+......+ +.++++...+.++. .++-=+.++-+...+....||.+|..++.++..
T Consensus 19 v~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~ 97 (342)
T PF06433_consen 19 VYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYK 97 (342)
T ss_dssp EEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--G
T ss_pred EEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccc
Q ss_pred --------CCeEEEEEc---CceEEEEcCCCC-cccccCCCCCCCCEEEEccCCeE-EEEeCC--eEEEEcCCCCcccCc
Q 001851 167 --------GENICIAIR---KGYMILNATNGA-LSEVFPSGRIGPPLVVSLLSGEL-LLGKEN--IGVFVDQNGKLLQAD 231 (1004)
Q Consensus 167 --------~~~i~v~~~---~~y~lidl~~~~-~~~L~~~~~~~~p~i~~~~~~E~-Ll~~~~--~gvfv~~~G~~~~~~ 231 (1004)
|.+++|.+- ....++|+..+. ..++-.+||. .|-+.+++.| .+|.|+ ..+-+|.+|+..++.
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~---~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW---LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE---EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE---EEEecCCCceEEEecCCceEEEEECCCCCEeEee
Q ss_pred ceeecCCCceEEEeCCeE
Q 001851 232 RICWSEAPIAVIIQKPYA 249 (1004)
Q Consensus 232 ~i~w~~~P~~i~~~~PYl 249 (1004)
+=.|...-.-+....+|.
T Consensus 175 t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp EEESSTTTS-B-S--EEE
T ss_pred ccccCCCCcccccccceE
No 372
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=34.84 E-value=9.7e+02 Score=29.66 Aligned_cols=200 Identities=9% Similarity=0.071 Sum_probs=94.9
Q ss_pred CcEEEEEEeC-----CEEEEEeCCCcEEE-EcCCCC--CCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccC
Q 001851 17 PKIDAVASYG-----LKILLGCSDGSLKI-YSPGSS--ESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ 88 (1004)
Q Consensus 17 ~~I~ci~~~~-----~~L~iGt~~G~l~~-y~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~ 88 (1004)
+-|+|++++. ..-++|.+++.-+. ..+... .+... +....-..++..--+.+|..|++.+...
T Consensus 72 ~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~---------~~~~e~~~~~~~kl~~kvv~Ik~~~~~~ 142 (670)
T PF10395_consen 72 TIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDG---------TVNSETTNEFELKLDDKVVGIKFSSDGK 142 (670)
T ss_pred ceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccccc---------ccCccccceEEEEcccceEEEEEecCCC
Confidence 4689999984 35688978876422 222222 11100 0001111111111267899999997777
Q ss_pred ceeeeeC-c-eEEEeCC--CCcccccccCCCCcE----EEEecC----CCcEEE-EEE--CCeE--EEEEecC-CCceeE
Q 001851 89 LLLSLSE-S-IAFHRLP--NLETIAVLTKAKGAN----VYSWDD----RRGFLC-FAR--QKRV--CIFRHDG-GRGFVE 150 (1004)
Q Consensus 89 ~ll~l~d-~-v~~~~L~--~l~~~~~i~~~kg~~----~f~~~~----~~~~l~-V~~--kkki--~l~~~~~-~~~f~~ 150 (1004)
.++++.+ | |..|+.. .++.+..+...+..+ .|.-+- ....++ |.. ++++ .+|.+.. +.....
T Consensus 143 ~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~E 222 (670)
T PF10395_consen 143 IIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFE 222 (670)
T ss_pred EEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEE
Confidence 7777665 6 8998872 233222222222221 121121 123333 332 3443 3555521 112222
Q ss_pred eeeeecCC-Cc--eEEEecCCeEEEEEcCceEEEEcCCCCcc---c---ccCCCCCCCCEEEEccCCeEEEEeCCeEEEE
Q 001851 151 VKDFGVPD-TV--KSMSWCGENICIAIRKGYMILNATNGALS---E---VFPSGRIGPPLVVSLLSGELLLGKENIGVFV 221 (1004)
Q Consensus 151 ~kEi~l~d-~~--~~l~~~~~~i~v~~~~~y~lidl~~~~~~---~---L~~~~~~~~p~i~~~~~~E~Ll~~~~~gvfv 221 (1004)
+....+.. .+ ..+++..+.++-=..+....+++.+-+.. . ++.......-.+.++..+.+||+.++....+
T Consensus 223 l~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLl 302 (670)
T PF10395_consen 223 LSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLL 302 (670)
T ss_pred eehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEE
Confidence 22111111 11 12344444443335666667776554322 2 2222111122356678899999999988888
Q ss_pred cCCC
Q 001851 222 DQNG 225 (1004)
Q Consensus 222 ~~~G 225 (1004)
|..-
T Consensus 303 d~~~ 306 (670)
T PF10395_consen 303 DLKF 306 (670)
T ss_pred eehh
Confidence 8533
No 373
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=34.08 E-value=23 Score=28.15 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=14.7
Q ss_pred EECCCCcCCcCCCccCCc
Q 001851 952 KITSDSMCSLCSKKIGTS 969 (1004)
Q Consensus 952 ~i~~~~~C~vC~k~l~~~ 969 (1004)
.|.+.+.|.||+++|...
T Consensus 4 ~v~PH~HC~VCg~aIp~d 21 (64)
T COG4068 4 GVVPHRHCVVCGKAIPPD 21 (64)
T ss_pred CCCCCccccccCCcCCCc
Confidence 456789999999998753
No 374
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=34.00 E-value=81 Score=24.87 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCC
Q 001851 304 GAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGS 354 (1004)
Q Consensus 304 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~ 354 (1004)
-.+|...+..|+++.|+..++............-...++.+.-..+.+.++
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~ 55 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGK 55 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCC
Confidence 356888999999999999998874211101111234555555555555443
No 375
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=33.66 E-value=7.7e+02 Score=28.16 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=67.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc-Cceeeee-Cc-eEEEeC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR-QLLLSLS-ES-IAFHRL 102 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~-~~ll~l~-d~-v~~~~L 102 (1004)
++.|.=|++|.++.+|.+.++.... ..+..+.... .+.+.|--+.-=|.. |+|++-+ |+ |.+|++
T Consensus 94 D~vIASgSeD~~v~vW~IPe~~l~~-----------~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 94 DCVIASGSEDTKVMVWQIPENGLTR-----------DLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred CceeecCCCCceEEEEECCCccccc-----------CcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 3567889999999999998764321 1122222222 245566666655544 6666543 54 999998
Q ss_pred CCCcccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCC
Q 001851 103 PNLETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGG 145 (1004)
Q Consensus 103 ~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~ 145 (1004)
.+-+.+-++...--+...+++.+.+.+|-+ ..|||.++.-..+
T Consensus 162 ~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 162 GTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred cCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 876655444433334455666666777766 5688999876544
No 376
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=33.54 E-value=58 Score=23.28 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhc
Q 001851 343 IRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 343 ~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
...|..++..|+|++|..++.++
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHH
Confidence 44588999999999999999875
No 377
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=33.48 E-value=67 Score=30.81 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=27.6
Q ss_pred CCCCcEEEEEEe-------CCEEEEEeCCCcEEEEcCCCCCC
Q 001851 14 NCSPKIDAVASY-------GLKILLGCSDGSLKIYSPGSSES 48 (1004)
Q Consensus 14 ~~~~~I~ci~~~-------~~~L~iGt~~G~l~~y~~~~~~~ 48 (1004)
+++..|+|+++- .+-|+|||... |+.|++..++.
T Consensus 45 Nin~~italaaG~l~~~~~~D~LliGt~t~-llaYDV~~N~d 85 (136)
T PF14781_consen 45 NINQEITALAAGRLKPDDGRDCLLIGTQTS-LLAYDVENNSD 85 (136)
T ss_pred ECCCceEEEEEEecCCCCCcCEEEEeccce-EEEEEcccCch
Confidence 567789998765 25899999998 89999998754
No 378
>PF04641 Rtf2: Rtf2 RING-finger
Probab=32.91 E-value=23 Score=38.43 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCcCCcCCCccCCc--EEEEcCCCCeEEEecccCCch--hhhhhccCC
Q 001851 956 DSMCSLCSKKIGTS--VFAVYPNGKTIVHFVCFRDSQ--SMKAVAKGS 999 (1004)
Q Consensus 956 ~~~C~vC~k~l~~~--~f~v~p~~~~v~H~~C~~~~~--~~~~~~~~~ 999 (1004)
.-.||++++.++.. .+++.||| ||+-+.|+.... ..||+-+.+
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG-~V~s~~alke~k~~~~Cp~c~~~ 159 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCG-CVFSEKALKELKKSKKCPVCGKP 159 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCC-CEeeHHHHHhhcccccccccCCc
Confidence 45899999999763 35556999 999999998653 357766543
No 379
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=32.68 E-value=1e+03 Score=29.17 Aligned_cols=183 Identities=13% Similarity=0.199 Sum_probs=93.3
Q ss_pred ceeEEEEecccCceeeeeC-ceEEEeCCCCcccccccCCC-CcEEEEecCCCcEEEEE-ECCeEEEEE--------ecCC
Q 001851 77 PILSMEVLASRQLLLSLSE-SIAFHRLPNLETIAVLTKAK-GANVYSWDDRRGFLCFA-RQKRVCIFR--------HDGG 145 (1004)
Q Consensus 77 ~I~qI~~l~~~~~ll~l~d-~v~~~~L~~l~~~~~i~~~k-g~~~f~~~~~~~~l~V~-~kkki~l~~--------~~~~ 145 (1004)
.|..|..-|...-|++-+| .+.+|+-++-....++..-| -+.+++...+..+.+-+ ..|.+.++. ++.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~ 93 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHN 93 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccC
Confidence 7888888898877776666 49999976654444433333 34566665443333333 333333332 1111
Q ss_pred C-----ceeEe---------eeee-------------cCCCceEEEecC--CeEEEEEcCceEEEEcCCCC-cccccCCC
Q 001851 146 R-----GFVEV---------KDFG-------------VPDTVKSMSWCG--ENICIAIRKGYMILNATNGA-LSEVFPSG 195 (1004)
Q Consensus 146 ~-----~f~~~---------kEi~-------------l~d~~~~l~~~~--~~i~v~~~~~y~lidl~~~~-~~~L~~~~ 195 (1004)
+ .|... .+|. .+..+.+.+|.+ ..+.+|..++-.-+.-.+|+ ...+-.+|
T Consensus 94 D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 94 DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPG 173 (1081)
T ss_pred CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCC
Confidence 1 11110 1111 122345556663 45666666665555444443 33344444
Q ss_pred CCCCCE--EEEc-----cCCeEEEE--eCCeEEEEcCCCCccc-CcceeecCCCceEEE--eCCeEEEEcC-CeeEEEE
Q 001851 196 RIGPPL--VVSL-----LSGELLLG--KENIGVFVDQNGKLLQ-ADRICWSEAPIAVII--QKPYAIALLP-RRVEVRS 261 (1004)
Q Consensus 196 ~~~~p~--i~~~-----~~~E~Ll~--~~~~gvfv~~~G~~~~-~~~i~w~~~P~~i~~--~~PYll~~~~-~~ieV~~ 261 (1004)
....|+ |++- +.++.+-. -+.+.-|+..+|..+. ..++.| .|..+.| ..-|++.-.. +.+.++.
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCC--CchhheeccCCcEEEEccCCCceEEEe
Confidence 333343 3222 22355432 3456678888998764 235555 4555444 4567776554 4555554
No 380
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.54 E-value=16 Score=27.76 Aligned_cols=15 Identities=20% Similarity=0.707 Sum_probs=12.5
Q ss_pred CCCCcCCcCCCccCC
Q 001851 954 TSDSMCSLCSKKIGT 968 (1004)
Q Consensus 954 ~~~~~C~vC~k~l~~ 968 (1004)
.++..|++|++|+.-
T Consensus 10 lp~KICpvCqRPFsW 24 (54)
T COG4338 10 LPDKICPVCQRPFSW 24 (54)
T ss_pred cchhhhhhhcCchHH
Confidence 468899999999863
No 381
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=32.12 E-value=6.7e+02 Score=26.96 Aligned_cols=152 Identities=12% Similarity=0.174 Sum_probs=73.5
Q ss_pred CcEEEEEEeCC-EEEEEeC-CCcEEEEcCCCCCCCCCCCCcccccccccceeee-eecCCCCCceeEEEEecccCceeee
Q 001851 17 PKIDAVASYGL-KILLGCS-DGSLKIYSPGSSESDRSPPSDYQSLRKESYELER-TISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 17 ~~I~ci~~~~~-~L~iGt~-~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
...+.|+.-++ .++|..+ +|.|+.+.+....... ....+.... .+....++.++-|...+..+.|++.
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~ 135 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL---------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA 135 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-----------EEEEEEEE---S---SS--EEEEEETTTTEEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc---------chhhceEEecccccCCCcceEEEEEcCCCCEEEEE
Confidence 45677777774 5566554 8999999886543210 111111000 0011235679999999999999888
Q ss_pred eCc--eEEEeCCC----Cc-------ccc-cccCCCCcEEEEecCCCcEEEEEEC--CeEEEEEecCCCceeEeeeeecC
Q 001851 94 SES--IAFHRLPN----LE-------TIA-VLTKAKGANVYSWDDRRGFLCFARQ--KRVCIFRHDGGRGFVEVKDFGVP 157 (1004)
Q Consensus 94 ~d~--v~~~~L~~----l~-------~~~-~i~~~kg~~~f~~~~~~~~l~V~~k--kki~l~~~~~~~~f~~~kEi~l~ 157 (1004)
.+. ..+|.+.. .. ... .....+..+.+++++..+.+.|-+. ++|+.+..+ |+ +.. ...+.
T Consensus 136 kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~-~~~--~~~L~ 211 (248)
T PF06977_consen 136 KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR-VVS--SLSLD 211 (248)
T ss_dssp EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEE--EEE-S
T ss_pred eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC-EEE--EEEeC
Confidence 873 44444422 11 001 1234556778888988888777654 444444422 32 222 23333
Q ss_pred C----------CceEEEecC-CeEEEEEc-CceEEE
Q 001851 158 D----------TVKSMSWCG-ENICIAIR-KGYMIL 181 (1004)
Q Consensus 158 d----------~~~~l~~~~-~~i~v~~~-~~y~li 181 (1004)
. .|-.|++.. +.|++++. +-|+.+
T Consensus 212 ~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 212 RGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 2 466788874 47777765 556543
No 382
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=31.84 E-value=69 Score=21.97 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHh
Q 001851 549 YTALLELYKSNARHREALKLLHELV 573 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~ 573 (1004)
|..++..|...|++++|++.+.+-.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 5678999999999999999998743
No 383
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=31.71 E-value=83 Score=31.42 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.+...|++++|+..++...... ........++...|..++..|+|++|...+.++
T Consensus 44 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 44 SAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567899999999887532100 000112245667799999999999999999774
No 384
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.65 E-value=1e+02 Score=33.48 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCC
Q 001851 308 VQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSI 379 (1004)
Q Consensus 308 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~ 379 (1004)
+.++..|++++|+..++...... ....+......+.|..++..|++++|...|.+ |+..||+-
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~-------vi~~yP~s 250 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQ-------VIKKYPGT 250 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHHCcCC
Confidence 45678999999999887652100 00112334445568888899999999999976 67888765
No 385
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=31.45 E-value=51 Score=27.20 Aligned_cols=35 Identities=26% Similarity=0.608 Sum_probs=24.7
Q ss_pred CCcCCcCCCccCC--cEEEEcCCCCeEEEecccCCchhh
Q 001851 956 DSMCSLCSKKIGT--SVFAVYPNGKTIVHFVCFRDSQSM 992 (1004)
Q Consensus 956 ~~~C~vC~k~l~~--~~f~v~p~~~~v~H~~C~~~~~~~ 992 (1004)
.+.|+-||+.|-. ....|--|| .++ +.|.+.-..+
T Consensus 3 ~~~CsFcG~~I~PGtG~m~Vr~Dg-~v~-~FcssKc~k~ 39 (66)
T COG2075 3 VRVCSFCGKKIEPGTGIMYVRNDG-KVL-RFCSSKCEKL 39 (66)
T ss_pred eeEecCcCCccCCCceEEEEecCC-eEE-EEechhHHHH
Confidence 3689999999954 567778888 566 4676554443
No 386
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=31.31 E-value=62 Score=27.24 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 340 SIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 340 ~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.+....|..++..|+|++|+++|.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567799999999999999999886
No 387
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=31.28 E-value=12 Score=28.59 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCCCcCCcCCCccCCc--EEEEcCCCCeEEEecccCCchh
Q 001851 954 TSDSMCSLCSKKIGTS--VFAVYPNGKTIVHFVCFRDSQS 991 (1004)
Q Consensus 954 ~~~~~C~vC~k~l~~~--~f~v~p~~~~v~H~~C~~~~~~ 991 (1004)
...+.|.+|+++|... .+-.-.|+ .++|..|......
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~-~~~H~~C~~~v~~ 47 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCK-VKCHKKCAEKVPQ 47 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCC-chHHHHHHhhcCC
Confidence 4567899999999753 23333466 8999999876544
No 388
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=30.63 E-value=70 Score=20.63 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=14.6
Q ss_pred CcEEEEEEeC-CEEEEEeCC
Q 001851 17 PKIDAVASYG-LKILLGCSD 35 (1004)
Q Consensus 17 ~~I~ci~~~~-~~L~iGt~~ 35 (1004)
+.|.|+.... ++|+|||.+
T Consensus 5 n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SCEEEEEE-TTSCEEEEETS
T ss_pred CeEEEEEEcCCcCEEEEeCC
Confidence 4788988775 699999974
No 389
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=30.51 E-value=58 Score=20.68 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 342 HIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 342 ~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
....|..++..++|++|...|.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456688999999999999999764
No 390
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.49 E-value=5.1e+02 Score=28.49 Aligned_cols=99 Identities=12% Similarity=0.239 Sum_probs=61.1
Q ss_pred ccccccCCCCcEEEEE-EeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecc
Q 001851 8 SLELISNCSPKIDAVA-SYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS 86 (1004)
Q Consensus 8 ~~~l~~~~~~~I~ci~-~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~ 86 (1004)
++.+++.-...|+++. .-+++++-|++|-++.+|++..--++ ...+ -..++|..|.+...
T Consensus 349 sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp--------------lATI-----RtdS~~NRvavs~g 409 (481)
T KOG0300|consen 349 SVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP--------------LATI-----RTDSPANRVAVSKG 409 (481)
T ss_pred eeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc--------------ceee-----ecCCccceeEeecC
Confidence 3334444445666544 34689999999999999998754321 1111 23678999988877
Q ss_pred cCceeeeeCc--eEEEeCCCCccccccc------CCCCcEEEEecCCC
Q 001851 87 RQLLLSLSES--IAFHRLPNLETIAVLT------KAKGANVYSWDDRR 126 (1004)
Q Consensus 87 ~~~ll~l~d~--v~~~~L~~l~~~~~i~------~~kg~~~f~~~~~~ 126 (1004)
..++.+=-|+ |.+|+|+.-. ++.++ .-+.++|.++.++.
T Consensus 410 ~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 410 HPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred CceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccC
Confidence 6666665673 9999987643 22222 22345666665443
No 391
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=30.46 E-value=63 Score=23.34 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.6
Q ss_pred CEEEEEeCCCcEEEEcCCC
Q 001851 27 LKILLGCSDGSLKIYSPGS 45 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~ 45 (1004)
+.+|+||.+|.|+.++...
T Consensus 1 ~~v~~~~~~g~l~AlD~~T 19 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKT 19 (38)
T ss_dssp TEEEEETTTSEEEEEETTT
T ss_pred CEEEEeCCCCEEEEEECCC
Confidence 4789999999999998764
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=30.04 E-value=6e+02 Score=31.28 Aligned_cols=95 Identities=18% Similarity=0.370 Sum_probs=54.5
Q ss_pred CcEEEEE--ECCeEEEEEecCCCceeEeee-eecCCCceEEEec----C-CeEEEEEcCceEEEEc-----CCCCc--cc
Q 001851 126 RGFLCFA--RQKRVCIFRHDGGRGFVEVKD-FGVPDTVKSMSWC----G-ENICIAIRKGYMILNA-----TNGAL--SE 190 (1004)
Q Consensus 126 ~~~l~V~--~kkki~l~~~~~~~~f~~~kE-i~l~d~~~~l~~~----~-~~i~v~~~~~y~lidl-----~~~~~--~~ 190 (1004)
.+.+|++ .+..+.|+....+. + +..| +.-.+.|+.+.|. | ..+.||+.+...++.- .+... .+
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~-l-E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGV-L-EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcE-E-EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 4566666 46677787766432 2 2222 4558899999997 2 3678888887666632 22111 11
Q ss_pred ccC---CCCCCCCE--EEEccCCeEEEEeCCeEEEEc
Q 001851 191 VFP---SGRIGPPL--VVSLLSGELLLGKENIGVFVD 222 (1004)
Q Consensus 191 L~~---~~~~~~p~--i~~~~~~E~Ll~~~~~gvfv~ 222 (1004)
+-. .+..+.|+ .+|++++.++++.+|.-...+
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 100 01112343 567888888888877555544
No 393
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=29.79 E-value=6.6e+02 Score=26.21 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred ccCCCCcEEEEEEeCCEEEE-EeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCce
Q 001851 12 ISNCSPKIDAVASYGLKILL-GCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLL 90 (1004)
Q Consensus 12 ~~~~~~~I~ci~~~~~~L~i-Gt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~l 90 (1004)
++.-.+.|-++-.|++-+|+ |+.|-+|..|++..+.. -....--+.-.+...++|..+.+.|...+|
T Consensus 179 ~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~------------v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 179 LSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSC------------VNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred ecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccce------------eeeccCcccCCCcccceeEEEEECCCccee
Q ss_pred eeeeC-c-eEEEeCCCCcccccc-cCCCCcEEEEecCCC-------------------------cEEEEE-ECCeEEEEE
Q 001851 91 LSLSE-S-IAFHRLPNLETIAVL-TKAKGANVYSWDDRR-------------------------GFLCFA-RQKRVCIFR 141 (1004)
Q Consensus 91 l~l~d-~-v~~~~L~~l~~~~~i-~~~kg~~~f~~~~~~-------------------------~~l~V~-~kkki~l~~ 141 (1004)
+.=.. + -.+|++..-.++... +....+.++-+++.. ..++|+ .|.|..-.+
T Consensus 247 ~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred eeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Q ss_pred e
Q 001851 142 H 142 (1004)
Q Consensus 142 ~ 142 (1004)
|
T Consensus 327 w 327 (350)
T KOG0641|consen 327 W 327 (350)
T ss_pred e
No 394
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.72 E-value=29 Score=25.90 Aligned_cols=14 Identities=14% Similarity=0.658 Sum_probs=11.8
Q ss_pred CCCcCCcCCCccCC
Q 001851 955 SDSMCSLCSKKIGT 968 (1004)
Q Consensus 955 ~~~~C~vC~k~l~~ 968 (1004)
+...|++|++++.-
T Consensus 7 p~K~C~~C~rpf~W 20 (42)
T PF10013_consen 7 PSKICPVCGRPFTW 20 (42)
T ss_pred CCCcCcccCCcchH
Confidence 56899999999864
No 395
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.68 E-value=7.9e+02 Score=27.06 Aligned_cols=110 Identities=12% Similarity=0.231 Sum_probs=67.3
Q ss_pred CcEEEEEEeC-CEE-EEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASYG-LKI-LLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~~-~~L-~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
...+-+++|. ++| +-.+.|-+...|+..+... -+..|++. ...|+....- ....++.=+
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-----------------sV~VFQGH-tdtVTS~vF~-~dd~vVSgS 375 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-----------------SVAVFQGH-TDTVTSVVFN-TDDRVVSGS 375 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcc-----------------eeeeeccc-ccceeEEEEe-cCCceeecC
Confidence 3455444444 444 4445566777777664321 12233332 3456665433 335555556
Q ss_pred C-c-eEEEeCCCC-cccccccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCC
Q 001851 95 E-S-IAFHRLPNL-ETIAVLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGG 145 (1004)
Q Consensus 95 d-~-v~~~~L~~l-~~~~~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~ 145 (1004)
| . |++|+|... .+++++...-.++.+++......|++- -++.+.||...+.
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 6 3 999999776 455666666678888888777778886 5678999998744
No 396
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=29.65 E-value=26 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.679 Sum_probs=15.0
Q ss_pred CCcCCCccCC---cEEEEcCCCCeEEEecccCC
Q 001851 959 CSLCSKKIGT---SVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 959 C~vC~k~l~~---~~f~v~p~~~~v~H~~C~~~ 988 (1004)
|+||.. +.. .+.+ .||| |++-..|+..
T Consensus 1 CpIc~e-~~~~~n~P~~-L~CG-H~~c~~cl~~ 30 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMV-LPCG-HVFCKDCLQK 30 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS--EEEHHHHHH
T ss_pred CCcccc-ccCCCCCCEE-EeCc-cHHHHHHHHH
Confidence 899999 643 2344 8899 9999999864
No 397
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=29.63 E-value=1e+03 Score=29.70 Aligned_cols=149 Identities=13% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcc--cccccccceee--eeecCC-CCCceeEEEEec--cc
Q 001851 15 CSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDY--QSLRKESYELE--RTISGF-SKKPILSMEVLA--SR 87 (1004)
Q Consensus 15 ~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~--~~l~~~~~~~~--~~~~~~-~k~~I~qI~~l~--~~ 87 (1004)
+++-++|+.. .+.|||+. .+.|++|+...-.... ..++ ....++.+... +.+... ..-.|..|.+-. ..
T Consensus 39 fKNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p--~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 39 FKNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLP--SRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred cccceeEEec-CCEEEEEE-CCEEEEEecCCccccc--ccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 4566777766 88899987 7779999987643311 0000 00000011100 000000 123688886554 34
Q ss_pred CceeeeeC-c-eEEEeCCCC----ccc-------c-------cccCCCCcEEEEecC----CCcEEEEEE-CCeEEEEEe
Q 001851 88 QLLLSLSE-S-IAFHRLPNL----ETI-------A-------VLTKAKGANVYSWDD----RRGFLCFAR-QKRVCIFRH 142 (1004)
Q Consensus 88 ~~ll~l~d-~-v~~~~L~~l----~~~-------~-------~i~~~kg~~~f~~~~----~~~~l~V~~-kkki~l~~~ 142 (1004)
++|++++| | |.+|...++ +.. . -....-++++..++. ....|||+. +..|.+|.+
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 68888888 6 888875332 000 0 011111334443432 234577764 456888876
Q ss_pred cC-CCceeEeeeeecCCCceEEEecC
Q 001851 143 DG-GRGFVEVKDFGVPDTVKSMSWCG 167 (1004)
Q Consensus 143 ~~-~~~f~~~kEi~l~d~~~~l~~~~ 167 (1004)
.. ...+...+++...+.|-+++|.+
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~ 220 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLD 220 (717)
T ss_pred eccccccccccccccccCCCeeEeec
Confidence 53 22344445666777888888863
No 398
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=28.82 E-value=2.5e+02 Score=35.30 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=50.8
Q ss_pred ccccCC-CCcEEEEEEe------C--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCC-CCcee
Q 001851 10 ELISNC-SPKIDAVASY------G--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFS-KKPIL 79 (1004)
Q Consensus 10 ~l~~~~-~~~I~ci~~~------~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-k~~I~ 79 (1004)
|++-.. ..+.+-|++. + +-||+||++|+|+.......... ... .++.+.+.|. ..||.
T Consensus 400 P~l~~~~~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~-----------~~~-~llEElqvf~~~~pI~ 467 (737)
T KOG3611|consen 400 PLLVKTGDYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESG-----------KSN-VLLEELQVFPDAEPIR 467 (737)
T ss_pred ceEEecccceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccC-----------ccc-eeEEEEeecCCCCcee
Confidence 665444 6677766666 2 25899999999998875544211 111 1333334443 36899
Q ss_pred EEEEecccCceeeeeC-ceEEEe
Q 001851 80 SMEVLASRQLLLSLSE-SIAFHR 101 (1004)
Q Consensus 80 qI~~l~~~~~ll~l~d-~v~~~~ 101 (1004)
-|++.+..+.|+|-++ +|.=..
T Consensus 468 ~m~Ls~~~~~LyVgs~~gV~qvp 490 (737)
T KOG3611|consen 468 SMQLSSKRGSLYVGSRSGVVQVP 490 (737)
T ss_pred EEEecccCCeEEEEccCcEEEee
Confidence 9999999998888877 443333
No 399
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=28.59 E-value=58 Score=21.29 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.7
Q ss_pred HHHHHHHHhhccHHHHHHHHH
Q 001851 550 TALLELYKSNARHREALKLLH 570 (1004)
Q Consensus 550 ~~L~~Ly~~~g~~~~AL~ll~ 570 (1004)
..|+..|...|++++|..+|.
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 568999999999999999875
No 400
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=28.53 E-value=2.1e+02 Score=19.99 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=22.4
Q ss_pred CCCceeEEEEecccCceeeeeC-c-eEEEe
Q 001851 74 SKKPILSMEVLASRQLLLSLSE-S-IAFHR 101 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~ 101 (1004)
+..+|..|...|..+.+++.+. + |.+|+
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4679999999999888887775 5 87774
No 401
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=28.41 E-value=14 Score=39.01 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=26.5
Q ss_pred CCcCCcCCCccCCcEEEEcCCCCeEEEecccC
Q 001851 956 DSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFR 987 (1004)
Q Consensus 956 ~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~ 987 (1004)
.++|+.|..-|....||+-.-. +|+|.+|+-
T Consensus 92 GTKCsaC~~GIpPtqVVRkAqd-~VYHl~CF~ 122 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKAQD-FVYHLHCFA 122 (383)
T ss_pred CCcchhhcCCCChHHHHHHhhc-ceeehhhhh
Confidence 6899999999998888877665 899999973
No 402
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.35 E-value=68 Score=34.83 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=44.6
Q ss_pred ecccChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 298 LFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 298 l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+.+--+..-|..|+...+|++|++++.... +.++ +-+.--...|+.++..++|.+|.+.+.+.
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~-Er~p----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL 70 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSEL-ERSP----RSRAGLSLLGYCYYRLQEFALAAECYEQL 70 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHH-hcCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777889999999999999986531 2221 12222234578888889999999999774
No 403
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=28.12 E-value=42 Score=29.54 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=25.9
Q ss_pred CCcCCcCCCccCCcEEEEcC-CCCeEEEecccCCch
Q 001851 956 DSMCSLCSKKIGTSVFAVYP-NGKTIVHFVCFRDSQ 990 (1004)
Q Consensus 956 ~~~C~vC~k~l~~~~f~v~p-~~~~v~H~~C~~~~~ 990 (1004)
..+|..|+++.|..+=-..| |. ..+|+.|+....
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~-~~fH~~CA~~~~ 70 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCS-RSFHVPCARKAG 70 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCC-cEEChHHHccCC
Confidence 56899999998866533355 56 899999998653
No 404
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=28.01 E-value=8e+02 Score=30.28 Aligned_cols=95 Identities=14% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCCCCceeEEEEecccCceeeee-C-ceEEEeCCCCcccccccCCCC--cEEEEe--cCCCcEEEEE-ECCeEEEEEecC
Q 001851 72 GFSKKPILSMEVLASRQLLLSLS-E-SIAFHRLPNLETIAVLTKAKG--ANVYSW--DDRRGFLCFA-RQKRVCIFRHDG 144 (1004)
Q Consensus 72 ~~~k~~I~qI~~l~~~~~ll~l~-d-~v~~~~L~~l~~~~~i~~~kg--~~~f~~--~~~~~~l~V~-~kkki~l~~~~~ 144 (1004)
..+|..+..|.|.|...+.++.| | .|.+|++.+-+........++ -+.+.+ |+..-.|+-. ..|.|.+|.+..
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 34577899999999988887765 5 499999876554433322221 233433 4432233333 789999999875
Q ss_pred CCceeEeeeeecCCCceEEEecCC
Q 001851 145 GRGFVEVKDFGVPDTVKSMSWCGE 168 (1004)
Q Consensus 145 ~~~f~~~kEi~l~d~~~~l~~~~~ 168 (1004)
|+-.... +--++.++.|.|.++
T Consensus 673 gEcvA~m--~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 673 GECVAQM--TGHSEAVTGVKFLND 694 (1080)
T ss_pred chhhhhh--cCcchheeeeeeccc
Confidence 5322111 222455666666543
No 405
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=27.77 E-value=3.3e+02 Score=32.89 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=65.4
Q ss_pred EEEEeCC-EEEEEeCCCcEEEEcCCCCCCCCCCCCcccc---c---ccccceeeeeecC--CCCCceeE---EEEecccC
Q 001851 21 AVASYGL-KILLGCSDGSLKIYSPGSSESDRSPPSDYQS---L---RKESYELERTISG--FSKKPILS---MEVLASRQ 88 (1004)
Q Consensus 21 ci~~~~~-~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~---l---~~~~~~~~~~~~~--~~k~~I~q---I~~l~~~~ 88 (1004)
|+...+. -+..|..||.+++|++..+....-..-+..+ - .++...+.+.... ...+.|.+ ..++.+..
T Consensus 151 cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 151 CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 3333343 4577999999999998876522100000000 0 0011111111111 12346666 55555556
Q ss_pred ceeeee--Cc-eEEEeCCCC------cccc------cccCCCCcEEEEecCCCcEEEEE-ECCeEEEEEec
Q 001851 89 LLLSLS--ES-IAFHRLPNL------ETIA------VLTKAKGANVYSWDDRRGFLCFA-RQKRVCIFRHD 143 (1004)
Q Consensus 89 ~ll~l~--d~-v~~~~L~~l------~~~~------~i~~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~ 143 (1004)
.|+..+ |+ ++||+|... ++.. .-.+..|.+.+++|-...++++. +...|.+|-..
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 666665 44 999999653 2211 11234588888888766677775 66777777643
No 406
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=27.67 E-value=3e+02 Score=27.61 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=30.2
Q ss_pred HHHHHHhccc-cHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001851 733 ERAILLGKMN-QHELALSLYVHKLCVPELALAYCDRVY 769 (1004)
Q Consensus 733 e~~~Ll~rlg-~h~~AL~ilv~~L~D~~~Ae~YC~~~~ 769 (1004)
--.=.+.|+| .|++.+++++ .-|++-.|.+|+.+..
T Consensus 80 l~lDMLkRL~~~~~~iievLL-~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 80 LGLDMLKRLGTAYEEIIEVLL-SKGQVLEALRYARQYH 116 (167)
T ss_pred HHHHHHHHhhhhHHHHHHHHH-hCCCHHHHHHHHHHcC
Confidence 3445889999 8888889999 6799999999998753
No 407
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=27.67 E-value=68 Score=31.16 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=37.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
-+...|++++|+...+....-+. .--..+...|..++..|++++|...|..+
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p-----~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDA-----SHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999876321010 11234566689999999999999999774
No 408
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.56 E-value=9.6e+02 Score=27.35 Aligned_cols=149 Identities=14% Similarity=0.232 Sum_probs=80.7
Q ss_pred CcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-
Q 001851 17 PKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE- 95 (1004)
Q Consensus 17 ~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d- 95 (1004)
..|......+..|..++++|.+.++........++ .+..- -+..++..+.-.+...-+++-++
T Consensus 106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss-------------~l~~l---a~g~g~~~~r~~~~~p~Iva~GGk 169 (412)
T KOG3881|consen 106 KSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSS-------------KLIKL---ATGPGLYDVRQTDTDPYIVATGGK 169 (412)
T ss_pred ccccchhhcCCEEEEEecCCcEEEEeccCCccccc-------------cceee---ecCCceeeeccCCCCCceEecCch
Confidence 45667777889999999999999998775432211 11100 11234444444444444444333
Q ss_pred -c---eEEEeCCCCcccccccCCCCcE-----EE--Ee-------cCCCcE-EE-EEECCeEEEEEecCCCceeEeeeee
Q 001851 96 -S---IAFHRLPNLETIAVLTKAKGAN-----VY--SW-------DDRRGF-LC-FARQKRVCIFRHDGGRGFVEVKDFG 155 (1004)
Q Consensus 96 -~---v~~~~L~~l~~~~~i~~~kg~~-----~f--~~-------~~~~~~-l~-V~~kkki~l~~~~~~~~f~~~kEi~ 155 (1004)
. +.+|+|..-+++ -..|++- .+ .+ .....+ ++ +..-.-+.+|....+| +.+.+|.
T Consensus 170 e~~n~lkiwdle~~~qi---w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd 244 (412)
T KOG3881|consen 170 ENINELKIWDLEQSKQI---WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFD 244 (412)
T ss_pred hcccceeeeecccceee---eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--cceeEec
Confidence 1 677887554333 2222221 00 01 111122 22 3344568888876433 3445666
Q ss_pred cCCC-ceEEEec--CCeEEEEEc-CceEEEEcCCC
Q 001851 156 VPDT-VKSMSWC--GENICIAIR-KGYMILNATNG 186 (1004)
Q Consensus 156 l~d~-~~~l~~~--~~~i~v~~~-~~y~lidl~~~ 186 (1004)
+.+. +.++... +++|++|+. .+...+|+.++
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 5554 4456554 688999987 45666676554
No 409
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=27.48 E-value=2.7e+02 Score=33.47 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=65.6
Q ss_pred CCCceeEEEEecccCceee-ee-Cc-eEEEeCCC-Ccccc----cccCCCCc--EEEEecCC-CcEEEEEECCeEEEEEe
Q 001851 74 SKKPILSMEVLASRQLLLS-LS-ES-IAFHRLPN-LETIA----VLTKAKGA--NVYSWDDR-RGFLCFARQKRVCIFRH 142 (1004)
Q Consensus 74 ~k~~I~qI~~l~~~~~ll~-l~-d~-v~~~~L~~-l~~~~----~i~~~kg~--~~f~~~~~-~~~l~V~~kkki~l~~~ 142 (1004)
+...|+.+...|-...||. ++ |. |++|.|+. .++.- .+-..+++ -+.-..+. .|.++++....+.++.+
T Consensus 78 H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~ 157 (1012)
T KOG1445|consen 78 HGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDI 157 (1012)
T ss_pred ccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEc
Confidence 4567888888887765554 44 33 99999983 22111 11111222 22322332 37788888888888887
Q ss_pred cCCCceeEeeee-ecCCCceEEEecCC--eEEEEEc-CceEEEEcCC
Q 001851 143 DGGRGFVEVKDF-GVPDTVKSMSWCGE--NICIAIR-KGYMILNATN 185 (1004)
Q Consensus 143 ~~~~~f~~~kEi-~l~d~~~~l~~~~~--~i~v~~~-~~y~lidl~~ 185 (1004)
.... ..-|. ..+|.++++.|..+ .+..+++ ++..|+|-..
T Consensus 158 stqk---~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 158 STQK---TAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ccCc---eeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 6322 22232 34789999999954 4555555 6778888654
No 410
>PRK01742 tolB translocation protein TolB; Provisional
Probab=27.33 E-value=1e+03 Score=27.62 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=62.1
Q ss_pred CCceeEEEEecccCceeeeeC--c---eEEEeCCCCcccccccCCCC-cEEEEecCCCcEEEEEE--CCeEEEEEecC-C
Q 001851 75 KKPILSMEVLASRQLLLSLSE--S---IAFHRLPNLETIAVLTKAKG-ANVYSWDDRRGFLCFAR--QKRVCIFRHDG-G 145 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d--~---v~~~~L~~l~~~~~i~~~kg-~~~f~~~~~~~~l~V~~--kkki~l~~~~~-~ 145 (1004)
+.+|......|..+.++..+. + |.++++.+-+.. .+...++ ....+++++...|+++. .+...||.++. +
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG 281 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence 457888889998888877653 2 888887553221 1222222 33567777766777753 45567777753 2
Q ss_pred CceeEeeeeecCCCceEEEec--CCeEEEEEc--CceEEE--EcCCCCc
Q 001851 146 RGFVEVKDFGVPDTVKSMSWC--GENICIAIR--KGYMIL--NATNGAL 188 (1004)
Q Consensus 146 ~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~--~~y~li--dl~~~~~ 188 (1004)
.....+. .-+....+.+|. |..|+++.. ....++ |..++..
T Consensus 282 ~~~~~lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 282 GTPSQLT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred CCeEeec--cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 2222221 123345667886 456776653 234444 4444444
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=27.05 E-value=1.7e+02 Score=22.47 Aligned_cols=38 Identities=26% Similarity=0.607 Sum_probs=28.8
Q ss_pred eeEeeeeecCCCceEEEecC--CeEEEEEcCc-eEEEEcCCC
Q 001851 148 FVEVKDFGVPDTVKSMSWCG--ENICIAIRKG-YMILNATNG 186 (1004)
Q Consensus 148 f~~~kEi~l~d~~~~l~~~~--~~i~v~~~~~-y~lidl~~~ 186 (1004)
|..+.|-.++..++.++|+. +.|.+|+.++ ..++.+ ++
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~ 42 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NW 42 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CC
Confidence 55666777889999999994 7899999865 555566 44
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=1e+03 Score=29.69 Aligned_cols=48 Identities=25% Similarity=0.480 Sum_probs=30.2
Q ss_pred EEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeee--cCCCceEEEecCCe
Q 001851 119 VYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFG--VPDTVKSMSWCGEN 169 (1004)
Q Consensus 119 ~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~--l~d~~~~l~~~~~~ 169 (1004)
-++++++++.||.. ..++|.+...+-.+ ..-|+. ..++|..|+|+|+.
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~---~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWVVSIDLSQ---ILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEEEecchhh---hhhccCCCCCCchHhceeecCC
Confidence 34667777777775 56666666655222 222444 56789999999853
No 413
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=27.04 E-value=4.1e+02 Score=30.07 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c-eEEEeCC
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRLP 103 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~ 103 (1004)
.+-++=++-||.|.+|++...+.. ...+. ..+..-|.-|.--....+|+.=.| | +++++|.
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~-------------~~~~~----kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR 332 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKK-------------AAVST----KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLR 332 (440)
T ss_pred CceEEeeecCceEEEEEecCCCcc-------------ceeEe----eccCCceeeEEccCCcceeeecCCCceEEEEEhh
Confidence 345677888999999998864321 11221 123446666666655563333344 5 9999998
Q ss_pred CCcc---cccccCCC-CcEEEEecCCC-cEEEE-EECCeEEEEEec
Q 001851 104 NLET---IAVLTKAK-GANVYSWDDRR-GFLCF-ARQKRVCIFRHD 143 (1004)
Q Consensus 104 ~l~~---~~~i~~~k-g~~~f~~~~~~-~~l~V-~~kkki~l~~~~ 143 (1004)
.++. ++.+..-| .++++.+++.. +.+++ +....|.|+.+.
T Consensus 333 ~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 333 QFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred hccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 7753 33332222 56677776543 44444 467788888764
No 414
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.94 E-value=7.1e+02 Score=28.79 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhc
Q 001851 549 YTALLELYKSNARHREALKLLHELVEE 575 (1004)
Q Consensus 549 ~~~L~~Ly~~~g~~~~AL~ll~~l~~~ 575 (1004)
+..++.+|...|++++|++++.++...
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 568899999999999999999888754
No 415
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.72 E-value=1.5e+02 Score=34.91 Aligned_cols=66 Identities=15% Similarity=0.308 Sum_probs=47.4
Q ss_pred CcEEEEEEeC-CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC
Q 001851 17 PKIDAVASYG-LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE 95 (1004)
Q Consensus 17 ~~I~ci~~~~-~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d 95 (1004)
+.-+|+++.+ ++++||+.+|.|..|+-..-- ..+ -++++ ..+|..|.+......+|.-|+
T Consensus 431 ~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~---------------AKT---AlPgL-G~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 431 NNFSCFATTESGYIVVGSLKGDIRLYDRIGRR---------------AKT---ALPGL-GDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred cccceeeecCCceEEEeecCCcEEeehhhhhh---------------hhh---ccccc-CCceeeEEeeccCcEEEEecc
Confidence 4567888887 699999999999999853210 000 12333 669999999999888888888
Q ss_pred c-eEEEe
Q 001851 96 S-IAFHR 101 (1004)
Q Consensus 96 ~-v~~~~ 101 (1004)
. +.+.+
T Consensus 492 tyLlLi~ 498 (644)
T KOG2395|consen 492 TYLLLID 498 (644)
T ss_pred cEEEEEE
Confidence 4 55444
No 416
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=26.53 E-value=4e+02 Score=24.94 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=22.2
Q ss_pred CCCcCCcCCCccC---CcEEEEcCCCCeEEEecccCC
Q 001851 955 SDSMCSLCSKKIG---TSVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 955 ~~~~C~vC~k~l~---~~~f~v~p~~~~v~H~~C~~~ 988 (1004)
.++.|..|++++| ++...-.-|+ +.|...|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~-~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCK-HRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTT-EEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCC-ccccCccCCc
Confidence 5789999999865 3444546677 8888888754
No 417
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=26.52 E-value=1.5e+02 Score=34.72 Aligned_cols=71 Identities=25% Similarity=0.319 Sum_probs=37.3
Q ss_pred cccccccccCCCC--cEEEEEEe----CC----EEEEEeCCCcEE-EEcCCCCCCCCCCCCcccccccccceeeeeecCC
Q 001851 5 AFDSLELISNCSP--KIDAVASY----GL----KILLGCSDGSLK-IYSPGSSESDRSPPSDYQSLRKESYELERTISGF 73 (1004)
Q Consensus 5 ~f~~~~l~~~~~~--~I~ci~~~----~~----~L~iGt~~G~l~-~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 73 (1004)
|....|++..... ..++|++. ++ -+|+||++|.|+ ...+....... ...+. ......+
T Consensus 350 ~~~~~p~~~~~~~~~~~T~i~v~~v~~~~~~~tV~flGT~~G~l~K~v~~~~~~~~~----------~~~~~-iee~~~~ 418 (433)
T PF01403_consen 350 PISGQPLFTRQGVNYRLTSIAVDRVQVENGSYTVAFLGTDDGRLHKKVVLSNSSSGH----------YESYI-IEEIQVF 418 (433)
T ss_dssp -CCGSCSEEEETSSS-EEEEEEEEEEETTTCEEEEEEEETTSEEEEEEEESSSSTCT-----------EEEE-EEEEE-S
T ss_pred CCCCcceeeeccccceeeEEEEEEEecCCCcEEEEEEecCCceEEEEEEecCCCCcc----------cccEE-EEEEeec
Confidence 5555555543333 56776666 33 479999999999 55554432210 01112 2223334
Q ss_pred CC-CceeEEEEecc
Q 001851 74 SK-KPILSMEVLAS 86 (1004)
Q Consensus 74 ~k-~~I~qI~~l~~ 86 (1004)
.. .||..+.+.+.
T Consensus 419 ~~~~pI~~~~l~~~ 432 (433)
T PF01403_consen 419 PDSEPIQSMKLSPK 432 (433)
T ss_dssp TSC-EEEEEEEETT
T ss_pred CCCCceEEEEeccC
Confidence 44 48888887653
No 418
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=26.30 E-value=31 Score=28.41 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCcCCcCCCccCCcEEEEcCCCCeEEEecccCCc-hhhhhhccCCC
Q 001851 956 DSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDS-QSMKAVAKGSP 1000 (1004)
Q Consensus 956 ~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~-~~~~~~~~~~~ 1000 (1004)
.-+|+.|..-+..++.. .-|. |++...|.++. .+.|||=..+.
T Consensus 7 lLrCs~C~~~l~~pv~l-~~Ce-H~fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCL-GGCE-HIFCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B----SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCcee-ccCc-cHHHHHHhHHhcCCCCCCcCChH
Confidence 45899999988766555 8898 99999999864 35688865543
No 419
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=82 Score=36.99 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=33.6
Q ss_pred hhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001851 730 LYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYE 770 (1004)
Q Consensus 730 l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~ 770 (1004)
|.+-..-+|.|+|+|.+|+..++ .+++.+.+.+||....+
T Consensus 243 ~l~ta~~IYlk~~~lt~av~~ai-Rl~~~~~i~e~~~a~~D 282 (881)
T COG5110 243 LLETALKIYLKMGDLTRAVVGAI-RLQKSKEIIEYVRAIED 282 (881)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH-hcccHHHHHHHHHhccC
Confidence 44444559999999999999999 79999999999987644
No 420
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=26.10 E-value=1.3e+03 Score=28.55 Aligned_cols=60 Identities=5% Similarity=-0.065 Sum_probs=40.6
Q ss_pred cChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 301 VPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 301 ~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
..+..-+..++.+|++++|+.+++..-... . ... ......|..++..|+|++|...|.+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p--~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~ 102 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--K--NGR-DLLRRWVISPLASSQPDAVLQVVNKL 102 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--C--Cch-hHHHHHhhhHhhcCCHHHHHHHHHHH
Confidence 345566778999999999999987642100 0 111 22333456667799999999999774
No 421
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.88 E-value=8.3e+02 Score=29.20 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=59.3
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC-c-eEEEeCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-S-IAFHRLPN 104 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~~L~~ 104 (1004)
..+..||..|.+..|++-++. ..+.+. ..-+..+|+.+.--.+...+-.+++ + +.++...+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~--------------it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGE--------------ITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred eEEEeecCCccEEEEEecCCe--------------EEEEEe---cCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 368999999999999977642 122221 1223456776664545556666654 3 55555322
Q ss_pred Cccccc-ccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeee-cCCCceEEEec
Q 001851 105 LETIAV-LTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFG-VPDTVKSMSWC 166 (1004)
Q Consensus 105 l~~~~~-i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~-l~d~~~~l~~~ 166 (1004)
...+.. -.....+...|+.++...+. ..-+.|.+|-....+ .+.-|. .+.++++++|.
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~-~as~~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILL-TASRQIKVLDIETKE---VVITFTGHGSPVRTLSFT 193 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEE-eccceEEEEEccCce---EEEEecCCCcceEEEEEE
Confidence 211110 01223344555555533333 334555555554221 111122 34566777644
No 422
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=25.83 E-value=48 Score=31.14 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=20.7
Q ss_pred CcCCcCCCccCC--cEEEEcCCCCeEEEecccCC
Q 001851 957 SMCSLCSKKIGT--SVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 957 ~~C~vC~k~l~~--~~f~v~p~~~~v~H~~C~~~ 988 (1004)
..|+.|+.+|-. ...+|-.+| .+++ +|..+
T Consensus 5 e~CsFcG~kIyPG~G~~fVR~DG-kvf~-FcssK 36 (131)
T PRK14891 5 RTCDYTGEEIEPGTGTMFVRKDG-TVLH-FVDSK 36 (131)
T ss_pred eeecCcCCcccCCCCcEEEecCC-CEEE-EecHH
Confidence 479999999854 455557887 5554 55444
No 423
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=25.81 E-value=1.1e+02 Score=28.68 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 307 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
...+...|++++|+..++.....+ ......+...|..++..|+|++|+..|.++
T Consensus 58 a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 58 AACCQMLKEYEEAIDAYALAAALD-----PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334567889999998876542111 011244566788999999999999999764
No 424
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=25.74 E-value=1.1e+02 Score=30.22 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 310 LTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 310 Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+...|++++|+..++..-.... .......++...|..+...|++++|+..|.++
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~--~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEI--DPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4578999999998876411100 00112235667799999999999999999775
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.72 E-value=8.3e+02 Score=26.01 Aligned_cols=110 Identities=13% Similarity=0.196 Sum_probs=60.0
Q ss_pred eEEEEEecCCCceeEeeeeecCCCceEEEecCC--eEEEEEcCceEE--EE--cCCCCc---ccccCCCCCCCCEEEEcc
Q 001851 136 RVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGE--NICIAIRKGYMI--LN--ATNGAL---SEVFPSGRIGPPLVVSLL 206 (1004)
Q Consensus 136 ki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~--~i~v~~~~~y~l--id--l~~~~~---~~L~~~~~~~~p~i~~~~ 206 (1004)
.-.||.|..+.+...++. --+.+-.++|..+ ..++-....|.+ +| ..+|.. ..++...++ +|.-..++
T Consensus 138 ~g~Ly~~~~~h~v~~i~~--~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-~~~e~~~P 214 (310)
T KOG4499|consen 138 GGELYSWLAGHQVELIWN--CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-QPFESLEP 214 (310)
T ss_pred ccEEEEeccCCCceeeeh--hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-CCcCCCCC
Confidence 446788765555444432 2345567889853 455555567777 33 666642 223332221 12111111
Q ss_pred CCeEEEEeCCeEEEEcCCCCcccCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEeeCCccc
Q 001851 207 SGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRH 279 (1004)
Q Consensus 207 ~~E~Ll~~~~~gvfv~~~G~~~~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l~~~~~ 279 (1004)
+ |+.+|.+|. =||-.+..+.+.-.+.. ++.+.|+|-+|..+.
T Consensus 215 D----------Gm~ID~eG~--------------------L~Va~~ng~~V~~~dp~-tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 215 D----------GMTIDTEGN--------------------LYVATFNGGTVQKVDPT-TGKILLEIKLPTPQI 256 (310)
T ss_pred C----------cceEccCCc--------------------EEEEEecCcEEEEECCC-CCcEEEEEEcCCCce
Confidence 2 333355554 26666666777777775 688999998886543
No 426
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.25 E-value=1e+02 Score=27.83 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=23.0
Q ss_pred HHHHHccccceEEECC-CCcCCcCCCccCCcEEE
Q 001851 940 KDELYNQRKTVVKITS-DSMCSLCSKKIGTSVFA 972 (1004)
Q Consensus 940 ~~el~~~~~~~v~i~~-~~~C~vC~k~l~~~~f~ 972 (1004)
-..|.+..-.+|.|+- .+.|+.||.++.. +|+
T Consensus 32 gk~Ln~~~LdyV~ie~G~t~CP~Cg~~~e~-~fv 64 (115)
T COG1885 32 GKRLNKPDLDYVEIEVGSTSCPKCGEPFES-AFV 64 (115)
T ss_pred HHHhccCCCCeEEEecccccCCCCCCccce-eEE
Confidence 3445555667899975 7899999999873 444
No 427
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.07 E-value=99 Score=35.24 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=38.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 309 QLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
-+.-.|++++++.|++..- .+.---.+|...|..+-....+.+||++|..+
T Consensus 447 L~~~Eg~~~D~i~LLe~~L------~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHL------IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHhhCccchHHHHHHHHH------hhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3456788999999998642 00011247888899999999999999999876
No 428
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=25.04 E-value=8.4e+02 Score=30.60 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=68.1
Q ss_pred EEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-C
Q 001851 19 IDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-E 95 (1004)
Q Consensus 19 I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d 95 (1004)
++|+..+ ++.+..|-.+|.|++|+-.+.+.. +.+.++ -.++-.+|..+....++..|+.=+ +
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~-----------~~t~t~----lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDD-----------SETCTL----LHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccc-----------cccceE----EEecccccceeEEecCCceEeecccc
Confidence 5676666 679999999999999985542221 112222 235667899998888776665322 2
Q ss_pred c-eEEEeCCCCcccccccCCCC-cEEEEecCCCcEEEE-EECCeEEEEEec
Q 001851 96 S-IAFHRLPNLETIAVLTKAKG-ANVYSWDDRRGFLCF-ARQKRVCIFRHD 143 (1004)
Q Consensus 96 ~-v~~~~L~~l~~~~~i~~~kg-~~~f~~~~~~~~l~V-~~kkki~l~~~~ 143 (1004)
+ +.+|.+.+-+. .-+++.-+ +..|.+.++....++ .....|.+....
T Consensus 273 ~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 273 GVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred eEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 4 78899876542 22444443 345667766654444 356777777753
No 429
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=24.96 E-value=5.7 Score=50.32 Aligned_cols=179 Identities=12% Similarity=0.043 Sum_probs=106.3
Q ss_pred ecccCceeeeeC----c-eEEEeCCCCcc--c-ccccCCCCcEEEEecCCC----cEEEEEECCeEEEEEecCCCcee-E
Q 001851 84 LASRQLLLSLSE----S-IAFHRLPNLET--I-AVLTKAKGANVYSWDDRR----GFLCFARQKRVCIFRHDGGRGFV-E 150 (1004)
Q Consensus 84 l~~~~~ll~l~d----~-v~~~~L~~l~~--~-~~i~~~kg~~~f~~~~~~----~~l~V~~kkki~l~~~~~~~~f~-~ 150 (1004)
.+..+++..+++ | ++++.-.+++. . ..+..++++..|+.+... +.++++.+|-+.+|.+..++.+. .
T Consensus 1092 ~e~e~~l~~l~~~~~eg~lsl~~~~~~~~~~~~~~V~~s~~~~l~~~~~~~k~~~~~~il~i~k~~~v~~vt~~d~~~~~ 1171 (1317)
T KOG0612|consen 1092 DEAEQILPLLQGSRLEGWLSLPPRQNLDRDWKRIYVIVSSKKILFYVSEQDKEQSGPLILDIKKLFHVRQVTQTDVRRAD 1171 (1317)
T ss_pred chhhcchhhhhhhhhhcccccCcccccccchheeEEeecccceEeeeccccccccchhhhhhhhceeEEeecccccccch
Confidence 455566665555 3 66665444322 1 124567888888886432 34677788889999988665442 3
Q ss_pred eeeeecCCCceEEEecCCeEEEEEcCceEEEEcCCCCc-------cccc-CCCCCCCCEEEEc--cCCeEEEEeCCeEEE
Q 001851 151 VKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGAL-------SEVF-PSGRIGPPLVVSL--LSGELLLGKENIGVF 220 (1004)
Q Consensus 151 ~kEi~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~~~-------~~L~-~~~~~~~p~i~~~--~~~E~Ll~~~~~gvf 220 (1004)
.+|| |..++.+.-..+. ++...+|..+++..+.. .+++ ..+..+..++..+ .-+++++++...+..
T Consensus 1172 ~~ei--p~~fq~l~~~~~~--~~~~~~f~~l~l~~~~~v~~~~~~~~~l~~~~~~~~~~~k~l~~~~~~ye~~~~~~~~~ 1247 (1317)
T KOG0612|consen 1172 AKEI--PRIFQILYANEGE--SGHPSEFSYLSLGPNSLVHKGHEFIPFLYHFPTNCEACIKPLWHMFKAYECRRCHIKCH 1247 (1317)
T ss_pred hhhc--chhHHHHHhhccc--ccCccccchhhccchhhcCCCCcchHHHhhcchhHHHHhhhcccchhHHHHHHhhcccc
Confidence 4566 7777777554434 78888888877763211 1110 0010011112111 113888888899999
Q ss_pred EcCCCCcccCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEEeeCCcccc
Q 001851 221 VDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHL 280 (1004)
Q Consensus 221 v~~~G~~~~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti~l~~~~~l 280 (1004)
+|..|+ +.|+.. .+.+..++++.+.+...+ ...+||+|..+-...+
T Consensus 1248 ~d~~~k------~m~p~k--y~~~~a~~l~l~a~~~~d------q~eWV~~l~k~~~k~~ 1293 (1317)
T KOG0612|consen 1248 KDHMDK------IMAPCK--YDTSSARHLLLLAESTED------QAKWVQRLVKKIPKPL 1293 (1317)
T ss_pred cccccc------ccCccc--ccccCCccceeccCCchH------HHHHHHHHhcccCCCC
Confidence 999887 444433 667777888888775433 3578888876654443
No 430
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.69 E-value=8.2e+02 Score=29.77 Aligned_cols=106 Identities=11% Similarity=0.226 Sum_probs=59.6
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee-Cc-eEEEeCCC
Q 001851 27 LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS-ES-IAFHRLPN 104 (1004)
Q Consensus 27 ~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~-d~-v~~~~L~~ 104 (1004)
++||-|..||.|..|.+....+..+. .|... .+ .+..=|..|.+.-..+.|+.++ |. |++|+...
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~----------~~~as--me-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPST----------PYIAS--ME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK 104 (735)
T ss_pred ceEEecCCCceEEEeccccccCCccc----------chhhh--hh-hhHhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence 45999999999999998876653210 12111 11 2233466666666666777665 54 99988543
Q ss_pred Cc-c-cccccCCC-CcEEEEecCCCcEEEEE--ECCeEEEEEecCC
Q 001851 105 LE-T-IAVLTKAK-GANVYSWDDRRGFLCFA--RQKRVCIFRHDGG 145 (1004)
Q Consensus 105 l~-~-~~~i~~~k-g~~~f~~~~~~~~l~V~--~kkki~l~~~~~~ 145 (1004)
.. . ...+..-+ =+.|++.-.....+++. ..|+|.+|.+..+
T Consensus 105 ~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 105 DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCc
Confidence 21 1 11121111 23455552233444443 6788988887643
No 431
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.33 E-value=1.4e+02 Score=32.11 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=40.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHhhCC---CchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 303 LGAQIVQLTASGDFEEALALCKLLP---PEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 303 ~~~qi~~Ll~~~~~eeAl~L~~~~~---~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
.-++.-.++..|+|.+|.+.+..+. +.+. ....-+=-.|-.+|.+|+|++|...|...
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-----YTPNAYYWLGESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-----ccchhHHHHHHHHHhcccchHHHHHHHHH
Confidence 4555667889999999998887642 1111 11122233488999999999999999773
No 432
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=24.24 E-value=9.2e+02 Score=26.16 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=44.0
Q ss_pred cEEEEecCCCcE-EEEEECCeEEEEEecCCCce-eEeeeeecCCCceEEEecC--CeEEEEEcCce-EEEEcCCC
Q 001851 117 ANVYSWDDRRGF-LCFARQKRVCIFRHDGGRGF-VEVKDFGVPDTVKSMSWCG--ENICIAIRKGY-MILNATNG 186 (1004)
Q Consensus 117 ~~~f~~~~~~~~-l~V~~kkki~l~~~~~~~~f-~~~kEi~l~d~~~~l~~~~--~~i~v~~~~~y-~lidl~~~ 186 (1004)
.+..+++.+... .+|+--++|.+|.+++.... ..+++-+..|.--+..|.. ....||+..+| .++|+..-
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 344556665544 55667788999999854322 2345555666666777774 35667777665 56788653
No 433
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.96 E-value=99 Score=22.68 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 340 SIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 340 ~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
+++.+.|..-+.+.+|++|++-|.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~a 27 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKA 27 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 36777899999999999999999876
No 434
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.89 E-value=1.4e+02 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.507 Sum_probs=21.5
Q ss_pred cccceEEECCCCcCCcCCCccCCcEEEEcCCCCeEEEe
Q 001851 946 QRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHF 983 (1004)
Q Consensus 946 ~~~~~v~i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~ 983 (1004)
..++.+-+..+..|.+|+|.= |+ --+| |..||
T Consensus 55 EqqKKaGv~ddatC~IC~KTK----FA-DG~G-H~C~Y 86 (169)
T KOG3799|consen 55 EQQKKAGVGDDATCGICHKTK----FA-DGCG-HNCSY 86 (169)
T ss_pred HHhhccccCcCcchhhhhhcc----cc-cccC-cccch
Confidence 344558888899999999962 33 3445 55555
No 435
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=23.72 E-value=1.2e+03 Score=27.09 Aligned_cols=102 Identities=14% Similarity=0.223 Sum_probs=55.1
Q ss_pred CCceEEEec--CCeEEEEEcCceE-EEEcCCCCcccccCCCCCCCC-EEEEccCCeEEEEeCCeEEEEcCCCCcccCcce
Q 001851 158 DTVKSMSWC--GENICIAIRKGYM-ILNATNGALSEVFPSGRIGPP-LVVSLLSGELLLGKENIGVFVDQNGKLLQADRI 233 (1004)
Q Consensus 158 d~~~~l~~~--~~~i~v~~~~~y~-lidl~~~~~~~L~~~~~~~~p-~i~~~~~~E~Ll~~~~~gvfv~~~G~~~~~~~i 233 (1004)
+++..|+.. |..|++-+.+++. +++..-.+..--+..+....| .+.|.+++-+++..++..++++..|+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg~~~~~~----- 291 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVGPDGDSI----- 291 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEECCCCCce-----
Confidence 455555543 5567666665543 333322222222222322233 5889999888887788888888877632
Q ss_pred eecCCCceEEEeCCeEEEEcC-CeeEEEEccCCCceeEEEe
Q 001851 234 CWSEAPIAVIIQKPYAIALLP-RRVEVRSLRVPYALIQTIV 273 (1004)
Q Consensus 234 ~w~~~P~~i~~~~PYll~~~~-~~ieV~~l~~~~~lvQti~ 273 (1004)
.| .+..+ ++.+.+ +++-|.+-. ...++|.++
T Consensus 292 ~~-------~~~~~-~~l~~E~DG~riit~~-~~~~l~~Vp 323 (410)
T PF04841_consen 292 SF-------WYDGP-VILVSEIDGVRIITST-SHEFLQRVP 323 (410)
T ss_pred EE-------eccCc-eEEeccCCceEEEeCC-ceEEEEECC
Confidence 22 22233 223333 677777643 345666654
No 436
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.64 E-value=1.5e+03 Score=28.09 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCC
Q 001851 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGS 45 (1004)
Q Consensus 16 ~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~ 45 (1004)
+.+|+|++..- .+||.|.+.|+|..-.++-
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 57899997664 5999999999988776654
No 437
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=23.47 E-value=2e+02 Score=28.00 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=45.2
Q ss_pred EEEecccChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHH-HHHHHHHHcCCCHHHHHHHHHhcC
Q 001851 295 IFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIH-IRFAHYLFDTGSYEEAMEHFLASQ 366 (1004)
Q Consensus 295 i~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~-~~~a~~lf~~~~f~~A~~~f~~~~ 366 (1004)
+-....-|-..||+.|+.+|+..+|++.+=..++-.....+-+-+... ..-++.-|++.+.+.+++.+....
T Consensus 30 ~~~a~~gp~~~ev~sll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~~ik~adI~~~v~~Ls~e~ 102 (152)
T KOG3380|consen 30 VESAALGPDEREVRSLLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLTSIKQADIEAAVKKLSTEE 102 (152)
T ss_pred hhhhccCCChHHHHHHHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Confidence 344455677889999999999999999886654321110001111111 122566788888888888875543
No 438
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=23.28 E-value=49 Score=26.90 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=12.0
Q ss_pred CCCcCCcCCCccCC
Q 001851 955 SDSMCSLCSKKIGT 968 (1004)
Q Consensus 955 ~~~~C~vC~k~l~~ 968 (1004)
+.+.|.+||++|..
T Consensus 2 ~HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 2 PHKHCPVCGKPIPP 15 (59)
T ss_pred CCCcCCcCCCcCCc
Confidence 56789999999985
No 439
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.17 E-value=32 Score=39.21 Aligned_cols=43 Identities=19% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCCCcCCcCCCccCCcE--EEEcCCCCeEEEecccCCc-hhhhhhcc
Q 001851 954 TSDSMCSLCSKKIGTSV--FAVYPNGKTIVHFVCFRDS-QSMKAVAK 997 (1004)
Q Consensus 954 ~~~~~C~vC~k~l~~~~--f~v~p~~~~v~H~~C~~~~-~~~~~~~~ 997 (1004)
++--+|+||=.|+..++ +.-.+|. |.||-.|+..- ...|||-|
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~-Hsfh~~cl~~w~~~scpvcR 218 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCN-HSFHCSCLMKWWDSSCPVCR 218 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecc-cccchHHHhhcccCcChhhh
Confidence 34579999999998876 4447898 99999999753 56777765
No 440
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=23.15 E-value=1.2e+03 Score=26.92 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=128.9
Q ss_pred CCCCcEEEEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecc--cCcee
Q 001851 14 NCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS--RQLLL 91 (1004)
Q Consensus 14 ~~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~--~~~ll 91 (1004)
.-|.........++.|.-|+=+|.+.+|+..... +...+.+ +...|.-+..-|- ..-+.
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~------------------~~~~l~g-H~~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN------------------LLQTLRG-HTSRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcc------------------eeEEEec-cccceeeEEEccCCCcccee
Confidence 3345555666667899999999999999876531 1223333 3456666666665 22344
Q ss_pred eee-Cc-eEEEeCCCCccccccc-CCCCcEEEEecCCCcEEEEE-ECCeEEEEEecCCCceeEeeeeecCCCceEEEec-
Q 001851 92 SLS-ES-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC- 166 (1004)
Q Consensus 92 ~l~-d~-v~~~~L~~l~~~~~i~-~~kg~~~f~~~~~~~~l~V~-~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~- 166 (1004)
+.+ || +.+|.+.+-.++..++ ...-+..++++++...|.-+ -...-.+|.+..+...-. .| --+..+.+++|.
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~-QE-GHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL-QE-GHSKGVFSIAFQP 313 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-hc-ccccccceeEecC
Confidence 444 56 9999987655554432 23445667778775555554 233344444432111000 01 013456778887
Q ss_pred -CCeEEEEEcCce-EEEEcCCCCcccccCCCCCCCCEE-EEccCCeEEEE---eCCeEEEEcCCCCcccCcceeecCCC-
Q 001851 167 -GENICIAIRKGY-MILNATNGALSEVFPSGRIGPPLV-VSLLSGELLLG---KENIGVFVDQNGKLLQADRICWSEAP- 239 (1004)
Q Consensus 167 -~~~i~v~~~~~y-~lidl~~~~~~~L~~~~~~~~p~i-~~~~~~E~Ll~---~~~~gvfv~~~G~~~~~~~i~w~~~P- 239 (1004)
|..++-|.-..| .+-|+.+|..+-.+.- ...|+. +..+.|-+.|+ .|+.+=+-|..++.. -.+|.=....
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~g--H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlV 390 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAG--HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLV 390 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecc--cccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccchh
Confidence 344444433334 5569999876655542 123432 23344555554 356665667666422 1222221221
Q ss_pred ceEEEeC--C-eEEEEc-CCeeEEEEccCCCceeEEEeeCCcccc
Q 001851 240 IAVIIQK--P-YAIALL-PRRVEVRSLRVPYALIQTIVLQNVRHL 280 (1004)
Q Consensus 240 ~~i~~~~--P-Yll~~~-~~~ieV~~l~~~~~lvQti~l~~~~~l 280 (1004)
+.|.|.. . ||+.-. .+.+.|.+-. +...++++.--..+.+
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~-~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTR-TWSPLKSLAGHEGKVI 434 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCC-CcccchhhcCCccceE
Confidence 2344432 2 444333 3788888875 4677777654444433
No 441
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=23.04 E-value=92 Score=33.50 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=23.0
Q ss_pred CcEEEEEEeC---------CEEEEEeCCCcEEEEcCC
Q 001851 17 PKIDAVASYG---------LKILLGCSDGSLKIYSPG 44 (1004)
Q Consensus 17 ~~I~ci~~~~---------~~L~iGt~~G~l~~y~~~ 44 (1004)
..|+|+++-- ..|+|||++|.|++.+-+
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~ 213 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQ 213 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECch
Confidence 4789988762 479999999999998744
No 442
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=22.99 E-value=1.6e+02 Score=29.23 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCchh--hhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCC
Q 001851 309 QLTASGDFEEALALCKLLPPEDA--SLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPS 378 (1004)
Q Consensus 309 ~Ll~~~~~eeAl~L~~~~~~~~~--~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~ 378 (1004)
.+...|++++|+..++.....+. ......+..+....|..+...|+|++|...|.++.--.+..+.+.|.
T Consensus 81 ~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 45688999999999876321110 00011233455555666668999998888877764333455555554
No 443
>PRK00807 50S ribosomal protein L24e; Validated
Probab=22.89 E-value=91 Score=24.63 Aligned_cols=30 Identities=37% Similarity=0.744 Sum_probs=20.0
Q ss_pred CcCCcCCCccC--CcEEEEcCCCCeEEEecccCC
Q 001851 957 SMCSLCSKKIG--TSVFAVYPNGKTIVHFVCFRD 988 (1004)
Q Consensus 957 ~~C~vC~k~l~--~~~f~v~p~~~~v~H~~C~~~ 988 (1004)
..|+.||.+|- .....|--+| .++ +.|...
T Consensus 2 ~~C~fcG~~I~pg~G~~~vr~Dg-kv~-~Fcs~K 33 (52)
T PRK00807 2 RTCSFCGKEIEPGTGKMYVKKDG-TIL-YFCSSK 33 (52)
T ss_pred cccCCCCCeEcCCCCeEEEEeCC-cEE-EEeCHH
Confidence 47999999986 3455556777 555 455443
No 444
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=22.82 E-value=8.7e+02 Score=30.95 Aligned_cols=100 Identities=11% Similarity=0.198 Sum_probs=55.7
Q ss_pred EEEecccCceeeeeC--c-eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEe------
Q 001851 81 MEVLASRQLLLSLSE--S-IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEV------ 151 (1004)
Q Consensus 81 I~~l~~~~~ll~l~d--~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~------ 151 (1004)
+.++...+..+.+++ | |.+-++.++++++++.. ...+.-.+|.+ |.+.|+.......|-+--+ .|..+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSDfDv~-GNlLitCG~S~R~~~l~~D-~FvkVYDLRmm 256 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISDFDVQ-GNLLITCGYSMRRYNLAMD-PFVKVYDLRMM 256 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeec-cccceeeeecc-CCeEEEeeccccccccccc-chhhhhhhhhh
Confidence 677778889999998 4 99999988888766422 11122223433 3333332222222221111 23322
Q ss_pred ---eeeecCCCceEEEecC---CeEEEEEc-CceEEEEc
Q 001851 152 ---KDFGVPDTVKSMSWCG---ENICIAIR-KGYMILNA 183 (1004)
Q Consensus 152 ---kEi~l~d~~~~l~~~~---~~i~v~~~-~~y~lidl 183 (1004)
--|.+|-.|+-+.|.- ..+||++. .++.++|.
T Consensus 257 ral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 257 RALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred hccCCcccccCchhhhhcccccceEEEEecccceeeccc
Confidence 2255666666666653 57788776 55777774
No 445
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=22.58 E-value=2.6e+02 Score=36.32 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=44.2
Q ss_pred cCCCCcEEEEecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecCCeEEEEEc-CceEEEEcC
Q 001851 112 TKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIR-KGYMILNAT 184 (1004)
Q Consensus 112 ~~~kg~~~f~~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~~~i~v~~~-~~y~lidl~ 184 (1004)
.+.||.-. ++.+-.|.++.+...||.++.|+++.....+.-+.+|--+.+|..+++.|.+|.- +++..+--.
T Consensus 1094 eE~KGtVs-avceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fq 1166 (1366)
T KOG1896|consen 1094 EEQKGTVS-AVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQ 1166 (1366)
T ss_pred hhcccceE-EEEEeccEEEEccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEc
Confidence 34455332 2333458899999999999999655445444445555556666666777777754 445444443
No 446
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=22.32 E-value=1.2e+03 Score=26.61 Aligned_cols=193 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCEEEEEeCCC---cEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--c---e
Q 001851 26 GLKILLGCSDG---SLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE--S---I 97 (1004)
Q Consensus 26 ~~~L~iGt~~G---~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d--~---v 97 (1004)
|+.|+.++..+ .|++|++..... .........+..+...|..+.+++..+ + |
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~--------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQR--------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCE--------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccE
Q ss_pred EEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECC----eEEEEEecCCCceeEeeeeecCCCceEEEec--CCeEE
Q 001851 98 AFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQK----RVCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GENIC 171 (1004)
Q Consensus 98 ~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kk----ki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~~i~ 171 (1004)
.++++.+-...............+++++...|+++..+ .|.++....+. ..+-..-........|. |+.|+
T Consensus 261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECCCCCEEE
Q ss_pred EEEcC----ceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEeCC-----eEEEEcCCCCcccCcceeecCCCceE
Q 001851 172 IAIRK----GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKEN-----IGVFVDQNGKLLQADRICWSEAPIAV 242 (1004)
Q Consensus 172 v~~~~----~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~~~-----~gvfv~~~G~~~~~~~i~w~~~P~~i 242 (1004)
++... ...++|+.++....+........| .+.+++..|+.... ...+.+.+|...+.-+.. .+.....
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p--~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~-~g~~~~~ 414 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGERVLTDTGLDESP--SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLG-NGDVREP 414 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeEEccCCCCCCCc--eECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCC-CCCcCCC
Q ss_pred EE
Q 001851 243 II 244 (1004)
Q Consensus 243 ~~ 244 (1004)
.|
T Consensus 415 ~w 416 (417)
T TIGR02800 415 AW 416 (417)
T ss_pred CC
No 447
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=22.29 E-value=44 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=21.8
Q ss_pred CcCCcCCCccCCcEEEEcCCCCeEEEeccc
Q 001851 957 SMCSLCSKKIGTSVFAVYPNGKTIVHFVCF 986 (1004)
Q Consensus 957 ~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~ 986 (1004)
=+|..|+++|..+.|. ..+| .++...|.
T Consensus 27 f~C~~C~~~l~~~~~~-~~~~-~~~C~~c~ 54 (58)
T PF00412_consen 27 FKCSKCGKPLNDGDFY-EKDG-KPYCKDCY 54 (58)
T ss_dssp SBETTTTCBTTTSSEE-EETT-EEEEHHHH
T ss_pred cccCCCCCccCCCeeE-eECC-EEECHHHH
Confidence 4899999999988755 4565 68887775
No 448
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=22.23 E-value=9.7e+02 Score=25.53 Aligned_cols=138 Identities=7% Similarity=0.064 Sum_probs=74.4
Q ss_pred ecCCCcEEEEEECCeEEEEEecCCCceeEeeeeecCCCceEEEecC--CeEEEEEcCceEEEEcCCCCccc-----c---
Q 001851 122 WDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCG--ENICIAIRKGYMILNATNGALSE-----V--- 191 (1004)
Q Consensus 122 ~~~~~~~l~V~~kkki~l~~~~~~~~f~~~kEi~l~d~~~~l~~~~--~~i~v~~~~~y~lidl~~~~~~~-----L--- 191 (1004)
.+.....|+||+...|.+|.++........ ... ..+..|.... +.+.+-..+.-+++++.+-.... .
T Consensus 3 ~~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i--~~~-~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDGLYVYDLSDPSKPTRI--LKL-SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cccCCCEEEEEECCCEEEEEecCCccceeE--eec-ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccc
Confidence 334456799998888989988432222221 111 1266666664 44444444666777776532211 0
Q ss_pred -------cCCCCCCCCEEE--Ec-cCCeEEE-EeCCeEEEEcCC---CCc-ccCcceeecCCCceEEEeCCeEEEEcCCe
Q 001851 192 -------FPSGRIGPPLVV--SL-LSGELLL-GKENIGVFVDQN---GKL-LQADRICWSEAPIAVIIQKPYAIALLPRR 256 (1004)
Q Consensus 192 -------~~~~~~~~p~i~--~~-~~~E~Ll-~~~~~gvfv~~~---G~~-~~~~~i~w~~~P~~i~~~~PYll~~~~~~ 256 (1004)
++..+ +....+ .. .+..+|+ +......++... +.- .....+..++.|..+.+....|+....+.
T Consensus 80 ~~~~~~~~~~~~-~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~ 158 (275)
T PF00780_consen 80 SRSLPTKLPETK-GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG 158 (275)
T ss_pred cccccccccccC-CeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc
Confidence 11111 011122 11 2233444 333332222221 221 12246888899999999999999998988
Q ss_pred eEEEEcc
Q 001851 257 VEVRSLR 263 (1004)
Q Consensus 257 ieV~~l~ 263 (1004)
.++.++.
T Consensus 159 f~~idl~ 165 (275)
T PF00780_consen 159 FYLIDLN 165 (275)
T ss_pred eEEEecC
Confidence 9998885
No 449
>PRK03629 tolB translocation protein TolB; Provisional
Probab=22.21 E-value=1.3e+03 Score=26.90 Aligned_cols=203 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred EEEEeCCEEEEEe---CCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeeeC--
Q 001851 21 AVASYGLKILLGC---SDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSE-- 95 (1004)
Q Consensus 21 ci~~~~~~L~iGt---~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~d-- 95 (1004)
+...-|+.|+..+ ....|+++++..... ......+..+......|+...|++..+
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------------~~l~~~~~~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------------RQVASFPRHNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------EEccCCCCCcCCeEECCCCCEEEEEEcCC
Q ss_pred c---eEEEeCCCCcccccccCCCCcEEEEecCCCcEEEEEECCe--EEEEEecCCCceeEeeeeecCCCceEEEec--CC
Q 001851 96 S---IAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKR--VCIFRHDGGRGFVEVKDFGVPDTVKSMSWC--GE 168 (1004)
Q Consensus 96 ~---v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~~~l~V~~kkk--i~l~~~~~~~~f~~~kEi~l~d~~~~l~~~--~~ 168 (1004)
+ |.++++.+-+.............++++++...|+.+..+. ..||.++ -..-...+-...........|. |+
T Consensus 265 g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d-~~~g~~~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 265 GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN-INGGAPQRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEE-CCCCCeEEeecCCCCccCEEECCCCC
Q ss_pred eEEEEEcCc----eEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEEEeC-----CeEEEEcCCCCcccCcceeecCCC
Q 001851 169 NICIAIRKG----YMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKE-----NIGVFVDQNGKLLQADRICWSEAP 239 (1004)
Q Consensus 169 ~i~v~~~~~----y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll~~~-----~~gvfv~~~G~~~~~~~i~w~~~P 239 (1004)
.|+++...+ ..++|+.++....|........|... +++..++... .....++.+|+.. +.--.+++..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~S--pDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l~~~~~~~ 420 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIA--PNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQV 420 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceEC--CCCCEEEEEEcCCCceEEEEEECCCCCe-EECccCCCCc
Q ss_pred ceEEEeCC
Q 001851 240 IAVIIQKP 247 (1004)
Q Consensus 240 ~~i~~~~P 247 (1004)
...+|...
T Consensus 421 ~~p~Wsp~ 428 (429)
T PRK03629 421 KFPAWSPY 428 (429)
T ss_pred CCcccCCC
No 450
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=22.08 E-value=5.4e+02 Score=31.66 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=27.1
Q ss_pred cHHHHHHHHHhcCcHHHHHHHHHhhccHHHHHHHHH
Q 001851 535 DVKICEEILQKKNHYTALLELYKSNARHREALKLLH 570 (1004)
Q Consensus 535 ~~~~~~~~L~~~~~~~~L~~Ly~~~g~~~~AL~ll~ 570 (1004)
++..+++...+.+.|.+.+-+|...+++++|-.+-+
T Consensus 897 ~lkaae~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred ChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 567777777777788888888888888777766654
No 451
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=21.90 E-value=2.8e+02 Score=32.78 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=50.3
Q ss_pred CCcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
.+=|+|++.. |..|.=|++|-.+.+|+... +++......-+-..|-..+.+|..+==+++
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~------------------~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFE------------------YKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchh------------------cceeeeeecccccceeEEeeeccCCCeEEE
Confidence 3457787765 46899999999999998653 333333333446689999999977544444
Q ss_pred eC---c-eEEEeCCCCc
Q 001851 94 SE---S-IAFHRLPNLE 106 (1004)
Q Consensus 94 ~d---~-v~~~~L~~l~ 106 (1004)
+. . |.+|++...+
T Consensus 112 sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSK 128 (758)
T ss_pred eccCcceEEEEeccccc
Confidence 33 3 9999997654
No 452
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=21.69 E-value=9.9e+02 Score=30.89 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=24.2
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHHhhcccC
Q 001851 548 HYTALLELYKSNARHREALKLLHELVEESKS 578 (1004)
Q Consensus 548 ~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~~ 578 (1004)
++.-.+..|..++++.+++++|.++++...+
T Consensus 171 m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 171 YLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence 4555566677778999999999999976654
No 453
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.67 E-value=1.8e+02 Score=32.45 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=47.7
Q ss_pred CeEEEecccChHHHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001851 293 NSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLA 364 (1004)
Q Consensus 293 ~~i~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~ 364 (1004)
..+-.....|- ++.++.+..|.-|++|++--.+-+. ....+++.=.|+..|+-|+|++|+..+.-
T Consensus 18 ~~~kkarK~P~---Ledfls~rDytGAislLefk~~~~~----EEE~~~~lWia~C~fhLgdY~~Al~~Y~~ 82 (557)
T KOG3785|consen 18 PTIKKARKMPE---LEDFLSNRDYTGAISLLEFKLNLDR----EEEDSLQLWIAHCYFHLGDYEEALNVYTF 82 (557)
T ss_pred CcchhhhcCch---HHHHHhcccchhHHHHHHHhhccch----hhhHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34555566663 7899999999999999975332222 22346677779999999999999998754
No 454
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=21.58 E-value=1.2e+02 Score=24.86 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 307 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
...+...+++++|+..++....... .........|..++..+++++|..+|.++
T Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 41 AAAYYKLGKYEEALEDYEKALELDP-----DNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4445677899999998876421110 11145667788899999999999998774
No 455
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=21.48 E-value=1e+02 Score=22.25 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=15.3
Q ss_pred HHHHHHcCCCHHHHHHHHH
Q 001851 345 FAHYLFDTGSYEEAMEHFL 363 (1004)
Q Consensus 345 ~a~~lf~~~~f~~A~~~f~ 363 (1004)
.|..++.+|+|++|.+.|.
T Consensus 7 ~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3788899999999999954
No 456
>PRK00420 hypothetical protein; Validated
Probab=21.24 E-value=65 Score=29.89 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCcCCcCCCccCCcEEEEcCCCCeEEEecccC
Q 001851 956 DSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFR 987 (1004)
Q Consensus 956 ~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~ 987 (1004)
+..|++|+-||. .+.+| .++...|..
T Consensus 23 ~~~CP~Cg~pLf-----~lk~g-~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLF-----ELKDG-EVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcce-----ecCCC-ceECCCCCC
Confidence 479999998764 34565 566666655
No 457
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=21.21 E-value=1.1e+03 Score=25.92 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCcEEEEEEeC--CEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeee
Q 001851 16 SPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSL 93 (1004)
Q Consensus 16 ~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l 93 (1004)
+++++++..-+ +.++.|.=|+.|.+|++..+.. .|.+. -++.+|+.|.+.+....++..
T Consensus 174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--------------~~~ls-----Gh~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--------------LYTLS-----GHADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred ceeEEEEEecccccceeeccccCceeeeccccCcc--------------eEEee-----cccCceeeEEeccCCCccccc
Confidence 56788877665 6999999999999999876432 23332 357799999999999999877
Q ss_pred e-Cc-eEEEeCCCCc
Q 001851 94 S-ES-IAFHRLPNLE 106 (1004)
Q Consensus 94 ~-d~-v~~~~L~~l~ 106 (1004)
+ |. +.+|+..-+.
T Consensus 235 sMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 235 SMDNTVRVWDVRPFA 249 (338)
T ss_pred cccceEEEEEecccC
Confidence 6 44 8899875543
No 458
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=21.15 E-value=1.5e+03 Score=27.35 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.4
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHHhhcc
Q 001851 548 HYTALLELYKSNARHREALKLLHELVEES 576 (1004)
Q Consensus 548 ~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~ 576 (1004)
.....|.+|..-|++++|..+|..|.+..
T Consensus 40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN 68 (517)
T PF12569_consen 40 VLEKRAELLLKLGRKEEAEKIYRELIDRN 68 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45778999999999999999999998754
No 459
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=21.09 E-value=1.7e+02 Score=29.66 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 307 IVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 307 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
...+...|++++|+..++.....+ + .....+...|..++..|+|++|.+.|.++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-P----DDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-c----ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345678999999999987642111 0 11234556788999999999999999875
No 460
>PRK05137 tolB translocation protein TolB; Provisional
Probab=21.01 E-value=1.3e+03 Score=26.69 Aligned_cols=134 Identities=14% Similarity=0.130 Sum_probs=75.4
Q ss_pred CCceeEEEEecccCceeeeeC--c---eEEEeCCCCcccccccCCCC-cEEEEecCCCcEEEEEE--CCeEEEEEecC-C
Q 001851 75 KKPILSMEVLASRQLLLSLSE--S---IAFHRLPNLETIAVLTKAKG-ANVYSWDDRRGFLCFAR--QKRVCIFRHDG-G 145 (1004)
Q Consensus 75 k~~I~qI~~l~~~~~ll~l~d--~---v~~~~L~~l~~~~~i~~~kg-~~~f~~~~~~~~l~V~~--kkki~l~~~~~-~ 145 (1004)
..+|......|..+.|+.+++ + |.++++.+-+. ..+...++ +..++++++...|+++. .+...||.++. +
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 557888888998887777753 2 88888865432 22333343 34567777766676653 23455666542 2
Q ss_pred CceeEeeeeecCCCceEEEec--CCeEEEEEcC----ceEEEEcCCCCcccccCCCCCCCCEEEEccCCeEEE
Q 001851 146 RGFVEVKDFGVPDTVKSMSWC--GENICIAIRK----GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLL 212 (1004)
Q Consensus 146 ~~f~~~kEi~l~d~~~~l~~~--~~~i~v~~~~----~y~lidl~~~~~~~L~~~~~~~~p~i~~~~~~E~Ll 212 (1004)
.....+. ..+.......|. |..|++++.+ ..+++|+.++....+...+.. .....+.+++..++
T Consensus 280 ~~~~~Lt--~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~-~~~~~~SpdG~~ia 349 (435)
T PRK05137 280 GTTTRLT--DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR-YSTPVWSPRGDLIA 349 (435)
T ss_pred CceEEcc--CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc-ccCeEECCCCCEEE
Confidence 2222221 122334556776 5678777642 467789888877666432211 11133456666554
No 461
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=21.00 E-value=1.5e+03 Score=27.42 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=47.8
Q ss_pred CCcEEEEEEe---CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEeccc---Cc
Q 001851 16 SPKIDAVASY---GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASR---QL 89 (1004)
Q Consensus 16 ~~~I~ci~~~---~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~---~~ 89 (1004)
+..|+|++.+ .+.|+.|+-+|.+..|++...... ....+. ....-++.++.++.=+... ++
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~------------~~s~ls-~~~~sh~~~v~~vvW~~~~~~~~f 308 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT------------PPSGLS-ALEVSHSEPVTAVVWLQNEHNTEF 308 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC------------CCcccc-cccccCCcCeEEEEEeccCCCCce
Confidence 4567777666 368899999999999998875431 001111 0111235577776655422 36
Q ss_pred eeeeeCc-eEEEeCCCC
Q 001851 90 LLSLSES-IAFHRLPNL 105 (1004)
Q Consensus 90 ll~l~d~-v~~~~L~~l 105 (1004)
+-+.+|| |..|++..+
T Consensus 309 ~s~ssDG~i~~W~~~~l 325 (555)
T KOG1587|consen 309 FSLSSDGSICSWDTDML 325 (555)
T ss_pred EEEecCCcEeeeecccc
Confidence 6666786 888876443
No 462
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.98 E-value=45 Score=26.47 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=26.1
Q ss_pred CCcCCcCCCccCC--cEEEEcCCCCeEEEecccCCchhh
Q 001851 956 DSMCSLCSKKIGT--SVFAVYPNGKTIVHFVCFRDSQSM 992 (1004)
Q Consensus 956 ~~~C~vC~k~l~~--~~f~v~p~~~~v~H~~C~~~~~~~ 992 (1004)
.+.|+.|+++++. ....-..|| .++-..|.......
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg-~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCG-RIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCccccccCcCc-CCcChHHcCCeeec
Confidence 4679999999885 235556778 78888888765443
No 463
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=20.89 E-value=2.5e+02 Score=21.09 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCceEEEecCCeEEEEEc-CceEEEEcCCCC
Q 001851 158 DTVKSMSWCGENICIAIR-KGYMILNATNGA 187 (1004)
Q Consensus 158 d~~~~l~~~~~~i~v~~~-~~y~lidl~~~~ 187 (1004)
+....+...|+..+++.. .+..++|+++..
T Consensus 2 G~a~~v~v~g~yaYva~~~~Gl~IvDISnPs 32 (42)
T PF08309_consen 2 GDARDVAVSGNYAYVADGNNGLVIVDISNPS 32 (42)
T ss_pred ceEEEEEEECCEEEEEeCCCCEEEEECCCCC
Confidence 345677888999999965 889999998753
No 464
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=20.87 E-value=38 Score=28.73 Aligned_cols=40 Identities=10% Similarity=0.273 Sum_probs=27.8
Q ss_pred CCCcCCcCCCccCCcEEEEcCCCCeEEEecccCCc----hhhhhhcc
Q 001851 955 SDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDS----QSMKAVAK 997 (1004)
Q Consensus 955 ~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~----~~~~~~~~ 997 (1004)
+.-.|++|+.-..++++. |+| ++|-..|...- ...||+++
T Consensus 3 ~~f~CpIt~~lM~dPVi~--~~G-~tyer~~I~~~l~~~~~~~P~t~ 46 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVIL--PSG-HTYERSAIERWLEQNGGTDPFTR 46 (73)
T ss_dssp GGGB-TTTSSB-SSEEEE--TTS-EEEEHHHHHHHHCTTSSB-TTT-
T ss_pred cccCCcCcCcHhhCceeC--CcC-CEEcHHHHHHHHHcCCCCCCCCC
Confidence 345799999999888765 999 99999887644 44577774
No 465
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=20.69 E-value=1.2e+02 Score=23.39 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=24.8
Q ss_pred cCCcCCCccCCcE-EEEcCCCCeEEEecccCCchhhhh
Q 001851 958 MCSLCSKKIGTSV-FAVYPNGKTIVHFVCFRDSQSMKA 994 (1004)
Q Consensus 958 ~C~vC~k~l~~~~-f~v~p~~~~v~H~~C~~~~~~~~~ 994 (1004)
.|.+|++.-.... +.-=-|+ ..+|..|+.......+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~-~~~H~~C~~~~~~~~~ 37 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCN-RWYHQECVGPPEKAEE 37 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTS-CEEETTTSTSSHSHHS
T ss_pred eCcCCCCcCCCCCeEEcCCCC-hhhCcccCCCChhhcc
Confidence 4899999544433 3334677 8999999987655433
No 466
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=20.61 E-value=7.4e+02 Score=28.06 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=65.3
Q ss_pred CcEEEEEEe--CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeEEEEecccCceeeee
Q 001851 17 PKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLS 94 (1004)
Q Consensus 17 ~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~~ll~l~ 94 (1004)
..|-|++.. +.+||-|.++|++...+++...+ -|... .+-.+..|..+.+-|.-|.+++.+
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs--------------i~V~~---~~~~~~~VY~m~~~P~DN~~~~~t 168 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQS--------------IYVAN---ENNNRGDVYHMDQHPTDNTLIVVT 168 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeeccccee--------------eeeec---ccCcccceeecccCCCCceEEEEe
Confidence 457787765 35899999999999988774321 11111 111255899999999999999999
Q ss_pred C-c-eEEEeCCCCc-cccc-ccCCCCcEEE--EecCCCcE-EEEE-ECCeEEEEEe
Q 001851 95 E-S-IAFHRLPNLE-TIAV-LTKAKGANVY--SWDDRRGF-LCFA-RQKRVCIFRH 142 (1004)
Q Consensus 95 d-~-v~~~~L~~l~-~~~~-i~~~kg~~~f--~~~~~~~~-l~V~-~kkki~l~~~ 142 (1004)
+ + |.+++..+-. ++.. ++..-|-.+. -+++.... |+++ .+...-+|..
T Consensus 169 ~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDR 224 (609)
T ss_pred cCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceee
Confidence 8 5 8888864422 1111 1111122222 23444443 5554 5566666654
No 467
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.61 E-value=4.1e+02 Score=30.84 Aligned_cols=88 Identities=10% Similarity=0.172 Sum_probs=53.7
Q ss_pred CceeEEEEecccCceeeeeC--c-eEEEeCCCCcccccccC-CCCcEEEEecCCCcEEEE-EECCeEEEEEecCCCceeE
Q 001851 76 KPILSMEVLASRQLLLSLSE--S-IAFHRLPNLETIAVLTK-AKGANVYSWDDRRGFLCF-ARQKRVCIFRHDGGRGFVE 150 (1004)
Q Consensus 76 ~~I~qI~~l~~~~~ll~l~d--~-v~~~~L~~l~~~~~i~~-~kg~~~f~~~~~~~~l~V-~~kkki~l~~~~~~~~f~~ 150 (1004)
.+++-|..-|. |-++-++. | |++|.=..-+|+..+-. .-+++.++++++...++- +..+++-||.+. .|.+
T Consensus 252 G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR---~~~q 327 (545)
T KOG1272|consen 252 GRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR---NFYQ 327 (545)
T ss_pred CccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec---cccc
Confidence 35555555543 44455543 4 99998555556555433 346788999876544444 377888888877 4555
Q ss_pred eeeeecCCCceEEEecC
Q 001851 151 VKDFGVPDTVKSMSWCG 167 (1004)
Q Consensus 151 ~kEi~l~d~~~~l~~~~ 167 (1004)
+..+..|.+...+++..
T Consensus 328 l~t~~tp~~a~~ls~Sq 344 (545)
T KOG1272|consen 328 LHTYRTPHPASNLSLSQ 344 (545)
T ss_pred cceeecCCCcccccccc
Confidence 55555566666666553
No 468
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=20.49 E-value=2.2e+02 Score=34.22 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=43.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceee-eeec--CCCCCceeEEEEecccCceeeeeC-c-eEEE
Q 001851 26 GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELE-RTIS--GFSKKPILSMEVLASRQLLLSLSE-S-IAFH 100 (1004)
Q Consensus 26 ~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~--~~~k~~I~qI~~l~~~~~ll~l~d-~-v~~~ 100 (1004)
++-||+|.++|.|-.|+..... +.+. +++. ..++.+|-++.-+|....||..++ . +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~----------------fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIV----------------FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred cceEEEecCCCceeeecchhhh----------------cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 4679999999999999866432 2211 1222 236789999999996556666654 3 9999
Q ss_pred eCCC
Q 001851 101 RLPN 104 (1004)
Q Consensus 101 ~L~~ 104 (1004)
++.+
T Consensus 128 dvk~ 131 (720)
T KOG0321|consen 128 DVKT 131 (720)
T ss_pred eecc
Confidence 9754
No 469
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=14 Score=42.24 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=32.0
Q ss_pred ECCCCcCCcCCCccCC----c-----------EEEEcCCCCeEEEecccCCchh----hhhhccC
Q 001851 953 ITSDSMCSLCSKKIGT----S-----------VFAVYPNGKTIVHFVCFRDSQS----MKAVAKG 998 (1004)
Q Consensus 953 i~~~~~C~vC~k~l~~----~-----------~f~v~p~~~~v~H~~C~~~~~~----~~~~~~~ 998 (1004)
+.....|++|=.++.. + ...+-||. |++|..|+..--. .|||-+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-HifH~~CL~~WMd~ykl~CPvCR~ 631 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-HIFHRQCLLQWMDTYKLICPVCRC 631 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchH-HHHHHHHHHHHHhhhcccCCccCC
Confidence 4456789999988753 1 24446998 9999999975433 7887654
No 470
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=20.02 E-value=1.9e+02 Score=27.79 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001851 305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLAS 365 (1004)
Q Consensus 305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~ 365 (1004)
..++.++..|++++|+.+++.....+ +. -..++...-..|...|++.+|+.+|.+.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PY----DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-----HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CC----CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555778999999999998742111 11 1245666677888999999999998764
Done!