Query 001851
Match_columns 1004
No_of_seqs 180 out of 1007
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 17:20:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001851.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1145-1149//hhsearch_pdb/001851hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 1.0 1 1 94.1 23.3 82 704-796 1038-1119(1630)
2 3lvg_A Clathrin heavy chain 1; 1.0 1 1 92.4 -11.0 292 506-925 264-562 (624)
3 1xi4_A Clathrin heavy chain; a 1.0 1 1 90.0 28.0 30 887-916 1428-1457(1630)
4 3lvg_A Clathrin heavy chain 1; 1.0 1 1 83.0 1.4 205 506-753 117-329 (624)
5 1b89_A Protein (clathrin heavy 1.0 1 1 75.3 15.6 366 307-925 9-393 (449)
6 1sq9_A Antiviral protein SKI8; 1.0 1 1 65.8 28.4 253 5-273 5-330 (397)
7 3mkq_A Coatomer beta'-subunit; 1.0 1 1 60.5 33.6 241 11-275 8-269 (814)
8 1b89_A Protein (clathrin heavy 1.0 1 1 60.3 20.3 200 506-744 242-448 (449)
9 3jro_A Fusion protein of prote 1.0 1 1 57.3 23.0 236 11-263 4-284 (753)
10 3mmy_A MRNA export factor; mRN 1.0 1 1 57.2 28.4 250 4-274 27-313 (368)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=94.13 Aligned_cols=82 Identities=12% Similarity=0.283 Sum_probs=60.9
Q ss_pred HHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999973118999478850089872257999998103338999999999809988999999998120258999999877
Q 001851 704 KKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGN 783 (1004)
Q Consensus 704 ~kL~~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~ll~rlg~h~~AL~ili~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~ 783 (1004)
.+.+.++.....|+...+-..+...++++|-+.+|.|.+++.+|+..++..+++++.|.+|+.++. .+.
T Consensus 1038 ~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn-----------~p~ 1106 (1630)
T 1xi4_A 1038 TRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN-----------EPA 1106 (1630)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHH
T ss_conf 559999987412369999999985898999999999808879999999999863999999998548-----------887
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 4899999743899
Q 001851 784 IYLTLLQIYLNPR 796 (1004)
Q Consensus 784 l~~~Ll~~~l~~~ 796 (1004)
+|..+-+.++...
T Consensus 1107 vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998479
No 2
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=1.00 E-value=1 Score=92.44 Aligned_cols=292 Identities=14% Similarity=0.175 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999628903578651279-94268999999983596789999998500299999999998630037887533
Q 001851 506 ILDTALLQALLLTGQSSAALELLKGL-NYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 584 (1004)
Q Consensus 506 ~iDT~Ll~~y~~~~~~~~l~~ll~~~-n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~il~~l~~~~~~~~~~~~ 584 (1004)
.+=|-|--+|.+.. |+++.+-++.- +.+++.-+...+++.+.+.+|+.||..-..++.|....+. .. ++
T Consensus 264 GmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~---h~------~~ 333 (624)
T 3lvg_A 264 GMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---HP------TD 333 (624)
T ss_dssp HHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTS---CH------HH
T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---CC------HH
T ss_conf 89999999998258-8999999999997504789999999976289999999610137899999980---88------53
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCHHHHHHCHHHHCCCCCCHHCCCCC--CCCCHHHHHHHHHHCC-CCCHHHHHHHHHHCC
Q ss_conf 2247992769998400699980468852020110184000100125--8899477999774119-310442589987400
Q 001851 585 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQYS-PSMQGRYLELMLAMN 661 (1004)
Q Consensus 585 ~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~p~~~~~if~~--~~l~~~~Vl~~L~~~~-~~l~~~YLE~li~~~ 661 (1004)
.| .++...+.+.++ ...++.++-..+-++..|..-..+++. +.++..+|+.++...+ -.+...||+.+-..|
T Consensus 334 Aw---~h~~Fkdii~KV--aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N 408 (624)
T 3lvg_A 334 AW---KEGQFKDIITKV--ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 408 (624)
T ss_dssp HC---CGGGGTTTGGGC--SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSC
T ss_pred HC---CHHHHHHHHHHC--CHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 20---578999999971--0389999999999984848899999860213780999999996488366499999999863
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHH---HHHHHH
Q ss_conf 58788212899999999999976432211101482100077999999973118999478850089872257---999998
Q 001851 662 ENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYE---ERAILL 738 (1004)
Q Consensus 662 ~~~~~~~~h~~L~~~Yl~~i~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~Yd~~~~L~~~~~~~l~~---e~~~ll 738 (1004)
...+-.-|-.+|+++ ++.+.|..-++.-+.||.-.+-.+++.+.|++ -.++||
T Consensus 409 ----~~aVNeAln~L~IEE--------------------EDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LY 464 (624)
T 3lvg_A 409 ----NKSVNESLNNLFITE--------------------EDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 464 (624)
T ss_dssp ----CHHHHHHHHHHHHHT--------------------TCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ----799999999998605--------------------15899999998733646899999885180589999999999
Q ss_pred HCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 10333899999999980998899999999812025899999987748999997438997761001111012467788878
Q 001851 739 GKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIP 818 (1004)
Q Consensus 739 ~rlg~h~~AL~ili~~L~D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1004)
.|-+++.+|+.+.- +-+.++-|++++... .+.++-..||..+++..+
T Consensus 465 kkn~rw~qsi~l~K-kDklykDAietAa~S-----------~~~elaeeLL~yFv~~g~--------------------- 511 (624)
T 3lvg_A 465 KGNNRWKQSVELCK-KDSLYKDAMQYASES-----------KDTELAEELLQWFLQEEK--------------------- 511 (624)
T ss_dssp HTTCHHHHHSSCSS-TTCCTTGGGTTTTTC-----------CCTTHHHHHHHHHHHHCS---------------------
T ss_pred HHCCCHHHHHHHHH-HCCCHHHHHHHHHHC-----------CCHHHHHHHHHHHHHCCC---------------------
T ss_conf 85240899999997-115489999999973-----------997899999999997386---------------------
Q ss_pred CCCCCCCEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 78864310004885431000001122246799988899999985433446873013899999982003899920011247
Q 001851 819 KAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLL 898 (1004)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~id~~~vL~~l 898 (1004)
.+.....|-...+.+.|-.||++-
T Consensus 512 --------------------------------------------------------~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 512 --------------------------------------------------------RECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp --------------------------------------------------------THHHHHHHHHTSSSSSCHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf --------------------------------------------------------589999999986225807999999
Q ss_pred CCCCCHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 754332212988999999568897799
Q 001851 899 PRETKLQNLLPFLEPLLRKSSEAHRNL 925 (1004)
Q Consensus 899 P~~~~i~~l~~fl~~~l~~~~~~~~~~ 925 (1004)
=-+--+.-.-||+.+.+|+++.+....
T Consensus 536 W~~~l~D~~mPY~Iq~~re~~~kv~~L 562 (624)
T 3lvg_A 536 WRHNIMDFAMPYFIQVMKEYLTKVDKL 562 (624)
T ss_dssp HHSCSSSCCCCSSTTTTTTHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 985153302325899999999999999
No 3
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=90.02 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=15.8
Q ss_pred CCCCHHHHCCCCCCCCCHHCHHHHHHHHHH
Q ss_conf 899920011247754332212988999999
Q 001851 887 DRINGAQALKLLPRETKLQNLLPFLEPLLR 916 (1004)
Q Consensus 887 ~~id~~~vL~~lP~~~~i~~l~~fl~~~l~ 916 (1004)
.++|+..+++++-+.-.|+.+++|+.....
T Consensus 1428 ~rlD~~R~V~l~~~~~~l~lik~yl~~vq~ 1457 (1630)
T 1xi4_A 1428 PRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 1457 (1630)
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 227939999999874771776999999988
No 4
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=1.00 E-value=1 Score=83.02 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999628903578651279942689999999835967899999985002999999999986300378875332
Q 001851 506 ILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEH 585 (1004)
Q Consensus 506 ~iDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~il~~l~~~~~~~~~~~~~ 585 (1004)
.|||.|+-||+.+++-..+.+|+.++|.-+++.+-+.|-+.+.|++.-.||..-.++.+---++..|.+-
T Consensus 117 ~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y---------- 186 (624)
T 3lvg_A 117 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY---------- 186 (624)
T ss_dssp TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG----------
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH----------
T ss_conf 0189999999861757899999759982438889999988368899999999676389999999999888----------
Q ss_pred CCCCCHHHHHHHHCCCCCCCCHHHHHHCHHHHCC-----CCCCHHCCCCC-CCCCHHHHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf 2479927699984006999804688520201101-----84000100125-889947799977411-9310442589987
Q 001851 586 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLES-----CPTQTIELFLS-GNIPADLVNSYLKQY-SPSMQGRYLELML 658 (1004)
Q Consensus 586 ~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~-----~p~~~~~if~~-~~l~~~~Vl~~L~~~-~~~l~~~YLE~li 658 (1004)
+.+++--++. +....+.+-..-.++. ....|+.|.+. |.++ .++.+.+.. .-+..+.-||.-+
T Consensus 187 ------q~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~--elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 187 ------QAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE--ELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp ------GSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCS--GGGSSSSTTCCCTTSTTTHHHHT
T ss_pred ------HHHHHHHHHC--CCHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ------9999999864--8902799999998473188999982632023588899--99999996798899999999774
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHCCCCCCCHHHHHHHH
Q ss_conf 400587882128999999999999764322111014821000779999999731-1899947885008987225799999
Q 001851 659 AMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAIL 737 (1004)
Q Consensus 659 ~~~~~~~~~~~h~~L~~~Yl~~i~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~l 737 (1004)
.. ....-...|+|+.+|... .++||+.+|+- ++..+..++++.|....+|.|.++|
T Consensus 257 gl--ErAHmGmFTELaILYsKY---------------------~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL 313 (624)
T 3lvg_A 257 GL--ERAHMGMFTELAILYSKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 313 (624)
T ss_dssp TS--TTCCHHHHHHHHHHHHSS---------------------CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH
T ss_pred CC--CCHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78--730678999999999825---------------------8899999999999750478999999997628999999
Q ss_pred HHCCCCHHHHHHHHHH
Q ss_conf 8103338999999999
Q 001851 738 LGKMNQHELALSLYVH 753 (1004)
Q Consensus 738 l~rlg~h~~AL~ili~ 753 (1004)
|.+-.++..|...++.
T Consensus 314 Y~~ydE~DnA~ltMi~ 329 (624)
T 3lvg_A 314 YDKYEEYDNAIITMMN 329 (624)
T ss_dssp HHHHTCHHHHHHTTTS
T ss_pred HHCCHHHHHHHHHHHH
T ss_conf 9610137899999980
No 5
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=75.35 Aligned_cols=366 Identities=15% Similarity=0.204 Sum_probs=207.7
Q ss_pred HHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 999993-4998999999742998204665441678999999997707799999999995399988998858997789987
Q 001851 307 IVQLTA-SGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTT 385 (1004)
Q Consensus 307 I~~Ll~-~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~a~~lf~~~~f~~A~~~f~~~~~dp~~vi~LFp~~~~~~~~ 385 (1004)
|+.|++ .|.+++|...++.+.. + .+...-|..+..+++|++|.+.|.++. +|..
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~-~---------~vWs~La~A~l~~g~~~eAIdsfika~---------D~~~------ 63 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNE-P---------AVWSQLAKAQLQKGMVKEAIDSYIKAD---------DPSS------ 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHCCC-H---------HHHHHHHHHHHHCCCHHHHHHHHHCCC---------CHHH------
T ss_conf 99999974479999999985998-6---------799999999987699899999998089---------8799------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 88896111135799998778999999889999987776202345543202029999999999999999898752127834
Q 001851 386 VVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTE 465 (1004)
Q Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~d~~~~~~~~~~~~~a~~~L~~yL~~~R~~~~~~~~~~~~~ 465 (1004)
+.. +....+ . ......++.||...|+..
T Consensus 64 -----------y~~----------V~~~ae-------------------~--~g~~EeAi~yl~~ark~~---------- 91 (449)
T 1b89_A 64 -----------YME----------VVQAAN-------------------T--SGNWEELVKYLQMARKKA---------- 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------HHH----------HHHHHH-------------------H--CCCHHHHHHHHHHHHHHC----------
T ss_conf -----------999----------999998-------------------6--798999999999998748----------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC----------
Q ss_conf 5663002587767874111137899888665201889999999999999996289035786512799426----------
Q 001851 466 EVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCD---------- 535 (1004)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDT~Ll~~y~~~~~~~~l~~ll~~~n~c~---------- 535 (1004)
.. ..|||.|..||..+++-..+..|++.||...
T Consensus 92 -----------------------------------~~--~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 92 -----------------------------------RE--SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 134 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTCC--------------
T ss_pred -----------------------------------CC--CHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf -----------------------------------41--02579999999981999999998849968999999999987
Q ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf ---89999999835967899999985002999999999986300378875332247992769998400699980468852
Q 001851 536 ---VKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEF 612 (1004)
Q Consensus 536 ---~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~il~~l~~~~~~~~~~~~~~~~~~~~~~~~yL~~L~~~~~~li~~~ 612 (1004)
.+++.....+...|..|+..+...|++++|.+...+..+ +..| ..+..-...+ .++++-...
T Consensus 135 ~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~--------~~~W-----k~v~~aCv~~--~ef~lA~~~ 199 (449)
T 1b89_A 135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS--------TRTW-----KEVCFACVDG--KEFRLAQMC 199 (449)
T ss_dssp --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC--------HHHH-----HHHHHHHHHT--TCHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC--------CHHH-----HHHHHHHHHC--CCHHHHHHH
T ss_conf 188999999999765699999999986459999999998189--------5659-----9999999980--848999998
Q ss_pred CHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 020110184000100125889947799977411-9310442589987400587882128999999999999764322111
Q 001851 613 SMLVLESCPTQTIELFLSGNIPADLVNSYLKQY-SPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQ 691 (1004)
Q Consensus 613 ~~wll~~~p~~~~~if~~~~l~~~~Vl~~L~~~-~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~i~~~~~~~~~~ 691 (1004)
+.- +..+|+. ...++.+.... ...-.+.+||..+... ...-..-++|..+|...
T Consensus 200 ~l~-L~~~ad~-----------l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky----------- 254 (449)
T 1b89_A 200 GLH-IVVHADE-----------LEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF----------- 254 (449)
T ss_dssp TTT-TTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT-----------
T ss_pred HHH-HHHCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHC-----------
T ss_conf 999-9848766-----------9999999998889999999999986775--87999998899999705-----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC---HHHHHHHHHH
Q ss_conf 014821000779999999731-189994788500898722579999981033389999999998099---8899999999
Q 001851 692 QKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCV---PELALAYCDR 767 (1004)
Q Consensus 692 ~~~~~~~~~~~r~kL~~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~ll~rlg~h~~AL~ili~~L~D---~~~Ae~YC~~ 767 (1004)
..+|++..|+. ++..+..++++.|..-.+|.|.++||-.-+++..|+..++....+ ...=.+-+.+
T Consensus 255 ----------~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k 324 (449)
T 1b89_A 255 ----------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 324 (449)
T ss_dssp ----------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf ----------9899999999999986675787888779899999999981123999999998587643226889999826
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCCCC
Q ss_conf 81202589999998774899999743899776100111101246778887878864310004885431000001122246
Q 001851 768 VYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMR 847 (1004)
Q Consensus 768 ~~~~~~~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (1004)
+ ...++|...+..|+...+
T Consensus 325 v-----------~n~elyYkai~fyl~~~p-------------------------------------------------- 343 (449)
T 1b89_A 325 V-----------ANVELYYRAIQFYLEFKP-------------------------------------------------- 343 (449)
T ss_dssp C-----------SSTHHHHHHHHHHHHHCG--------------------------------------------------
T ss_pred H-----------HHHHHHHHHHHHHHHCCH--------------------------------------------------
T ss_conf 2-----------678999999999984187--------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 799988899999985433446873013899999982003899920011247754332212988999999568897799
Q 001851 848 MSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNL 925 (1004)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~id~~~vL~~lP~~~~i~~l~~fl~~~l~~~~~~~~~~ 925 (1004)
..+...+..| ..++|+..|+.++-..-.|+.+++||..+.......+.++
T Consensus 344 -------------------------~~l~~ll~~l---~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnea 393 (449)
T 1b89_A 344 -------------------------LLLNDLLMVL---SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 393 (449)
T ss_dssp -------------------------GGHHHHHHHH---GGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHH
T ss_pred -------------------------HHHHHHHHHH---HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------------------9899999987---7526909999999973892878999999998637999999
No 6
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=1.00 E-value=1 Score=65.78 Aligned_cols=253 Identities=12% Similarity=0.056 Sum_probs=157.8
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 64000122489995898998399999990788479980799999999998632234455314565327788861299973
Q 001851 5 AFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVL 84 (1004)
Q Consensus 5 af~~~~i~~~~~~~I~ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l 84 (1004)
.......+..-...|.|++...+.|+.|..+|.+.+|++...... ..+.....+.. +..+|..+...
T Consensus 5 ~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~------------~~~~~~~~~~~-h~~~v~~~~~~ 71 (397)
T 1sq9_A 5 FIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE------------NPKDKSYSHFV-HKSGLHHVDVL 71 (397)
T ss_dssp EEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC------------CGGGGEEEEEC-CTTCEEEEEEE
T ss_pred HHHHHHHHHHHHCCEEEEEECCCEEEEECCCCEEEEEECCCCCCC------------CCCCCCEEEEC-CCCCEEEEEEE
T ss_conf 554333335541670799944884799818997999878885346------------67775357713-79867899983
Q ss_pred CC----C---CCEEEEEC-C-EEEEECCCCCC-----CCCCCC------CCCCEEEEEC----CCCCE-EEEE-ECCEEE
Q ss_conf 44----4---71245609-4-68996999730-----000147------8895799960----89748-9999-778479
Q 001851 85 AS----R---QLLLSLSE-S-IAFHRLPNLET-----IAVLTK------AKGANVYSWD----DRRGF-LCFA-RQKRVC 138 (1004)
Q Consensus 85 ~~----~---~~ll~l~d-~-i~~~~L~~l~~-----~~~~~~------~kg~~~fa~~----~~~~~-l~V~-~kkki~ 138 (1004)
+. . ..+++.+. + |.+|++.+.+. ...+.. ...+.++++. ++... ++++ ..+.|.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 151 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEE
T ss_conf 35556886455899984899789997657766520111032255666677747999996446888851899990898489
Q ss_pred EEEECC------CCCEE--EEEEEE--------CCCCCEEEEECCC-EEEEEEC-CCEEEEECCCCCCCCCCCC---C--
Q ss_conf 999629------98636--854440--------6997208985098-5999986-8349998389970003689---9--
Q 001851 139 IFRHDG------GRGFV--EVKDFG--------VPDTVKSMSWCGE-NICIAIR-KGYMILNATNGALSEVFPS---G-- 195 (1004)
Q Consensus 139 l~~~~~------~~~~~--~~kEi~--------l~d~~~~i~~~~~-~i~v~~~-~~y~lidl~~~~~~~l~~~---~-- 195 (1004)
+|.... +.... ....+. -...+.+++|..+ .+++|.. +...++|+.++.....+.. .
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~ 231 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 231 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred EEECCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCC
T ss_conf 98688544545563130267523540100146777884299987995699990898089998999963289823446666
Q ss_pred -CCCCCEEEECCCCEEEEE--EC---CEEEEECC-CCCCCCCCCEE--------------ECCCCCEEEEE--CCEEEEE
Q ss_conf -999988998269819999--47---74899868-99724596234--------------06897468970--7949998
Q 001851 196 -RIGPPLVVSLLSGELLLG--KE---NIGVFVDQ-NGKLLQADRIC--------------WSEAPIAVIIQ--KPYAIAL 252 (1004)
Q Consensus 196 -~~~~p~i~~~~~~E~Ll~--~d---~~gifv~~-~G~~~~~~~i~--------------w~~~P~~i~~~--~PYil~~ 252 (1004)
......+...+++.+|++ .| ....+++. .|.+.. .+. -......+.+. ..|+++.
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG--SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE--EECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCCC--EECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 67740168997899989998658777669999899885120--0046764321111234667837899998999989998
Q ss_pred CC-CEEEEEECCCCCCEEEEEE
Q ss_conf 19-9269998668984048986
Q 001851 253 LP-RRVEVRSLRVPYALIQTIV 273 (1004)
Q Consensus 253 ~~-~~ieV~~l~~~~~lvQti~ 273 (1004)
.. +.|.|+++. ++..++++.
T Consensus 310 ~~dg~i~iwd~~-~~~~~~~~~ 330 (397)
T 1sq9_A 310 GWDGKLRFWDVK-TKERITTLN 330 (397)
T ss_dssp ETTSEEEEEETT-TTEEEEEEE
T ss_pred ECCCEEEEEECC-CCCEEEEEE
T ss_conf 479809999768-886557775
No 7
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=60.51 Aligned_cols=241 Identities=10% Similarity=0.098 Sum_probs=149.4
Q ss_pred CCCCCCCCEEEEEEEC--CEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 2248999589899839--99999907884799807999999999986322344553145653277888612999734447
Q 001851 11 LISNCSPKIDAVASYG--LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQ 88 (1004)
Q Consensus 11 i~~~~~~~I~ci~~~~--~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~~~ 88 (1004)
.+..-+..|+|++.+. ..|++|+.+|.+.+|++... ...+.+. .+..+|..+...|..+
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~------------------~~~~~~~-~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ------------------VEVRSIQ-VTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT------------------EEEEEEE-CCSSCEEEEEEEGGGT
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC------------------CEEEEEE-CCCCCEEEEEEECCCC
T ss_conf 45058985689998899998999947998999989999------------------1677873-3899688999968999
Q ss_pred CEEEEEC-C-EEEEECCCCCCCCCCC-CCCCCEEEEECCCCCEEEEEE-CCEEEEEEECCCCCEEEEEEEE-CCCCCEEE
Q ss_conf 1245609-4-6899699973000014-788957999608974899997-7847999962998636854440-69972089
Q 001851 89 LLLSLSE-S-IAFHRLPNLETIAVLT-KAKGANVYSWDDRRGFLCFAR-QKRVCIFRHDGGRGFVEVKDFG-VPDTVKSM 163 (1004)
Q Consensus 89 ~ll~l~d-~-i~~~~L~~l~~~~~~~-~~kg~~~fa~~~~~~~l~V~~-kkki~l~~~~~~~~~~~~kEi~-l~d~~~~i 163 (1004)
.+++.++ + +.+|++.+.+.+..+. ....+.+++++++...++++. .+.|.+|.+..+. ...+.+. -++.+.++
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS--EEEEEEECCSSCEEEE
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCC--EEEEEECCCCCCEEEE
T ss_conf 89999289949999899995879981689978999995899989999289989999899995--4879983799868899
Q ss_pred EECC---CEEEEEEC-CCEEEEECCCCCCCCCCCCCC-CCCCEEEECC--CCEEEEE--ECCEEEEECC-CCCCCCCCCE
Q ss_conf 8509---85999986-834999838997000368999-9998899826--9819999--4774899868-9972459623
Q 001851 164 SWCG---ENICIAIR-KGYMILNATNGALSEVFPSGR-IGPPLVVSLL--SGELLLG--KENIGVFVDQ-NGKLLQADRI 233 (1004)
Q Consensus 164 ~~~~---~~i~v~~~-~~y~lidl~~~~~~~l~~~~~-~~~p~i~~~~--~~E~Ll~--~d~~gifv~~-~G~~~~~~~i 233 (1004)
+|.. +.++.|.. +...+.|+.++.....+..+. .....+...+ ++.++++ .|+...+.+. .|... ..+
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~ 224 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV--ATL 224 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE--EEE
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE--EEE
T ss_conf 997699999999948894999989999610698358889779999997799989999938997999999999188--998
Q ss_pred EECCCC-CEEEEE--CCEEEEECC-CEEEEEECCCCCCEEEEEEEC
Q ss_conf 406897-468970--794999819-926999866898404898607
Q 001851 234 CWSEAP-IAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVLQ 275 (1004)
Q Consensus 234 ~w~~~P-~~i~~~--~PYil~~~~-~~ieV~~l~~~~~lvQti~l~ 275 (1004)
.....+ ..+++. .+++++... +.|.|+++. ++..++++...
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~~ 269 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS-TYKVEKTLNVG 269 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCSEEEEECCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCCEEEEEECC
T ss_conf 4788887899985999999999089969999899-99477784068
No 8
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=60.34 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999962890357865127-994268999999983596789999998500299999999998630037887533
Q 001851 506 ILDTALLQALLLTGQSSAALELLKG-LNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDE 584 (1004)
Q Consensus 506 ~iDT~Ll~~y~~~~~~~~l~~ll~~-~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~il~~l~~~~~~~~~~~~ 584 (1004)
.+=|-|-.+|.+.+ ++.+.+-++. -+.+++.-+...+.+...+.+++.||...+.++.|....++ +. ++
T Consensus 242 ~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~---h~------~~ 311 (449)
T 1b89_A 242 GMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---HP------TD 311 (449)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---ST------TT
T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH---CC------HH
T ss_conf 99988999997059-8999999999999866757878887798999999999811239999999985---87------64
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCHHHHHHCHHHHCCCCCCHHCCCCC--CCCCHHHHHHHHHHC-CCCCHHHHHHHHHHCC
Q ss_conf 2247992769998400699980468852020110184000100125--889947799977411-9310442589987400
Q 001851 585 HTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNIPADLVNSYLKQY-SPSMQGRYLELMLAMN 661 (1004)
Q Consensus 585 ~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~p~~~~~if~~--~~l~~~~Vl~~L~~~-~~~l~~~YLE~li~~~ 661 (1004)
. +.++...+.+.+. ...++.++-..+-++..|..--.+++. +.+++++|+.++... +-.+...||+.+-..|
T Consensus 312 a---~~~~~f~~~~~kv--~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 312 A---WKEGQFKDIITKV--ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp T---CCHHHHHHHHHHC--SSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred H---HHHHHHHHHHHCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 3---2268899998262--6789999999999841879899999987752690999999997389287899999999863
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHH---HHHHH
Q ss_conf 587882128999999999999764322111014821000779999999731189994788500898722579---99998
Q 001851 662 ENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEE---RAILL 738 (1004)
Q Consensus 662 ~~~~~~~~h~~L~~~Yl~~i~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~Yd~~~~L~~~~~~~l~~e---~~~ll 738 (1004)
...+-.-|-.+|++. ++.+.|..-++.-+.||.-.+-.+++.+.+++- -++||
T Consensus 387 ----~~~vnealn~l~iee--------------------ed~~~lr~si~~~~nfd~~~l~~~le~h~l~~~r~iaa~~~ 442 (449)
T 1b89_A 387 ----NKSVNESLNNLFITE--------------------EDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 442 (449)
T ss_dssp ----CHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHCCCSCHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ----799999999998714--------------------25999999998743757999998874382489999999998
Q ss_pred HCCCCH
Q ss_conf 103338
Q 001851 739 GKMNQH 744 (1004)
Q Consensus 739 ~rlg~h 744 (1004)
.|-+++
T Consensus 443 ~~~~~~ 448 (449)
T 1b89_A 443 KGNNRW 448 (449)
T ss_dssp C-----
T ss_pred HHCCCC
T ss_conf 755578
No 9
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=57.26 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=135.7
Q ss_pred CCCCCCCCEEEEEEE--CCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC--
Q ss_conf 224899958989983--9999999078847998079999999999863223445531456532778886129997344--
Q 001851 11 LISNCSPKIDAVASY--GLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLAS-- 86 (1004)
Q Consensus 11 i~~~~~~~I~ci~~~--~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~qI~~l~~-- 86 (1004)
++..-...|+|++.. ++.|+.|+.+|.|.+|++... .....+.+.+ ++.+|..+...+.
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------------~~~~~~~l~~-h~~~V~~l~~s~~~~ 66 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------------THKLIDTLTG-HEGPVWRVDWAHPKF 66 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT----------------EEEEEEEECC-CSSCEEEEEECCTTS
T ss_pred ECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC----------------CCCCCEECCC-CCCCEEEEEECCCCC
T ss_conf 61048220378997798986999977994899864799----------------7742245037-767567999558889
Q ss_pred CCCEEEEEC-C-EEEEECCCCC--CCCC-CCCCCCCEEEEECCC--CCEEEEE-ECCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 471245609-4-6899699973--0000-147889579996089--7489999-77847999962998636854440699
Q 001851 87 RQLLLSLSE-S-IAFHRLPNLE--TIAV-LTKAKGANVYSWDDR--RGFLCFA-RQKRVCIFRHDGGRGFVEVKDFGVPD 158 (1004)
Q Consensus 87 ~~~ll~l~d-~-i~~~~L~~l~--~~~~-~~~~kg~~~fa~~~~--~~~l~V~-~kkki~l~~~~~~~~~~~~kEi~l~d 158 (1004)
.+.+++.+. | |.+|++.+.+ .... ......+++++++++ ...++++ ..+.|.+|....+.......-..-++
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCC
T ss_conf 98799982898389998999964100244688877279997899999879999689818999830488742067525778
Q ss_pred CCEEEEECC---------------CEEEEEEC-CCEEEEECCCCCCC--CCCCCCCCCCC--EEEECCC---CEEEEE--
Q ss_conf 720898509---------------85999986-83499983899700--03689999998--8998269---819999--
Q 001851 159 TVKSMSWCG---------------ENICIAIR-KGYMILNATNGALS--EVFPSGRIGPP--LVVSLLS---GELLLG-- 213 (1004)
Q Consensus 159 ~~~~i~~~~---------------~~i~v~~~-~~y~lidl~~~~~~--~l~~~~~~~~p--~i~~~~~---~E~Ll~-- 213 (1004)
.+.+++|.. +.++.|.. +...+.|+.++... .+........+ .+...++ +.++++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCEEEEEE
T ss_conf 66899935766654333456889877999977974899953687665300013057888579999646888887799971
Q ss_pred ECCEEEEECCCCC-C-CCCCCE---EECCCCCEEEEE--CCEEEEECC-CEEEEEECC
Q ss_conf 4774899868997-2-459623---406897468970--794999819-926999866
Q 001851 214 KENIGVFVDQNGK-L-LQADRI---CWSEAPIAVIIQ--KPYAIALLP-RRVEVRSLR 263 (1004)
Q Consensus 214 ~d~~gifv~~~G~-~-~~~~~i---~w~~~P~~i~~~--~PYil~~~~-~~ieV~~l~ 263 (1004)
.|+...+.+.... . ...... ........+++. ..++++... +.|.|+++.
T Consensus 227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 6897999337898886415774058888745999992899989997279979997368
No 10
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=57.21 Aligned_cols=250 Identities=10% Similarity=0.082 Sum_probs=152.5
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC-----CEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
Q ss_conf 76400012248999589899839-----9999990788479980799999999998632234455314565327788861
Q 001851 4 NAFDSLELISNCSPKIDAVASYG-----LKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPI 78 (1004)
Q Consensus 4 ~af~~~~i~~~~~~~I~ci~~~~-----~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I 78 (1004)
.++....++..-...|+|++... +.|+.|+.+|.+.+|++.... ....+.+. .+..+|
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------------~~~~~~~~-~h~~~v 89 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------------QTIPKAQQ-MHTGPV 89 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------------CEEEEEEE-ECSSCE
T ss_pred CCCCEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCC----------------CEEEEEEC-CCCCCE
T ss_conf 8761347413798856899986898876089997799968999857888----------------54678861-645977
Q ss_pred EEEEEECCCCCEEEEEC-C-EEEEECCCCCCCCCCCCCCCCEEEEE--CCCCCEEEEE-ECCEEEEEEECCCCCEEEEEE
Q ss_conf 29997344471245609-4-68996999730000147889579996--0897489999-778479999629986368544
Q 001851 79 LSMEVLASRQLLLSLSE-S-IAFHRLPNLETIAVLTKAKGANVYSW--DDRRGFLCFA-RQKRVCIFRHDGGRGFVEVKD 153 (1004)
Q Consensus 79 ~qI~~l~~~~~ll~l~d-~-i~~~~L~~l~~~~~~~~~kg~~~fa~--~~~~~~l~V~-~kkki~l~~~~~~~~~~~~kE 153 (1004)
..+...|..+.+++.+. + +.+|++.+.+..........++.+++ +++...++++ ..+.|.+|....++ ....
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~ 166 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN---PMMV 166 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS---CSEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEECCCCC---EEEE
T ss_conf 8999876788899973897189998678972331136685679998757998889980289868999899994---7789
Q ss_pred EECCCCCEEEEECCCEEEEEEC-CCEEEEECCCCCCC-CCCCCC-CCCCCEEEECCCC-----EEEEE-ECCEEEEECCC
Q ss_conf 4069972089850985999986-83499983899700-036899-9999889982698-----19999-47748998689
Q 001851 154 FGVPDTVKSMSWCGENICIAIR-KGYMILNATNGALS-EVFPSG-RIGPPLVVSLLSG-----ELLLG-KENIGVFVDQN 224 (1004)
Q Consensus 154 i~l~d~~~~i~~~~~~i~v~~~-~~y~lidl~~~~~~-~l~~~~-~~~~p~i~~~~~~-----E~Ll~-~d~~gifv~~~ 224 (1004)
+..++.+.++.+.++.++++.. ....++++.+.... ...... .....++...... .++.+ .|....+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred EECCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEEEECC
T ss_conf 85588705788527835897089968999843566601211243468876478755678898728996488868998447
Q ss_pred CCCC--CCCCEEECC-------------CCCEEEEE--CCEEEEECC-CEEEEEECCCCCCEEEEEEE
Q ss_conf 9724--596234068-------------97468970--794999819-92699986689840489860
Q 001851 225 GKLL--QADRICWSE-------------APIAVIIQ--KPYAIALLP-RRVEVRSLRVPYALIQTIVL 274 (1004)
Q Consensus 225 G~~~--~~~~i~w~~-------------~P~~i~~~--~PYil~~~~-~~ieV~~l~~~~~lvQti~l 274 (1004)
.... ....+.... ....+++. ..|+++... +.|.|+++. ++..++++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~ 313 (368)
T 3mmy_A 247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD-ARTKLKTSEQ 313 (368)
T ss_dssp CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT-TTEEEEECCC
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECC-CCCEEEEECC
T ss_conf 777655630223220366654465564525899991689989998249849999899-7767888648
Done!