BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001852
         (1004 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 37.4 bits (85), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPDHVT-FVSLLSACNHGGLVDKGLQYYNTM 759
           +++ L +V+   G  Q+AIE +   L+ +KPD +  +++L +A    G ++  +Q Y   
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGYINLAAALVAAGDMEGAVQAY-VS 126

Query: 760 TTEFGVPAGIEHCVC--IIDLLGRSGRLAEAET-FINKMPVTPN-DLVWRSLLASSKIHG 815
             ++       +CV   + +LL   GRL EA+  ++  +   PN  + W +L       G
Sbjct: 127 ALQYNPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

Query: 816 NVELAKKAAEHLFELDPSDDSSYVLYSNV 844
            + LA    E    LDP+   +Y+   NV
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNV 212


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,802,082
Number of Sequences: 62578
Number of extensions: 1301169
Number of successful extensions: 2797
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2796
Number of HSP's gapped (non-prelim): 2
length of query: 1004
length of database: 14,973,337
effective HSP length: 108
effective length of query: 896
effective length of database: 8,214,913
effective search space: 7360562048
effective search space used: 7360562048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)