Query 001852
Match_columns 1004
No_of_seqs 875 out of 5723
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-158 3E-163 1463.3 83.4 809 190-1002 48-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5E-130 1E-134 1179.7 64.2 612 392-1004 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.8E-97 4E-102 918.6 72.9 677 87-769 47-726 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.8E-68 6.1E-73 642.7 49.7 474 291-767 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.1E-67 4.5E-72 634.4 50.6 524 56-634 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.5E-65 7.7E-70 615.1 55.6 523 260-802 367-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-39 6.7E-44 409.9 76.7 806 39-862 70-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-38 1.3E-42 398.1 74.7 809 39-865 36-867 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.4E-39 5.2E-44 285.5 4.5 106 871-994 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.7E-22 3.8E-27 256.4 59.9 425 371-866 276-743 (1157)
11 PRK11447 cellulose synthase su 99.9 1.6E-21 3.6E-26 247.6 65.1 661 65-837 33-750 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.7E-20 3.7E-25 226.6 56.1 619 174-860 56-736 (987)
13 PRK09782 bacteriophage N4 rece 99.9 2.4E-19 5.2E-24 216.7 56.1 675 71-852 55-761 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 2.6E-18 5.6E-23 182.6 29.4 444 398-855 51-510 (966)
15 KOG4318 Bicoid mRNA stability 99.8 4.4E-16 9.6E-21 172.7 36.8 696 112-864 11-808 (1088)
16 PRK11788 tetratricopeptide rep 99.8 8E-18 1.7E-22 190.8 23.7 300 574-878 42-361 (389)
17 KOG4626 O-linked N-acetylgluco 99.8 4.1E-17 8.8E-22 173.6 23.9 410 440-862 58-483 (966)
18 PRK11788 tetratricopeptide rep 99.8 6.2E-17 1.4E-21 183.5 26.2 302 406-749 46-363 (389)
19 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-15 2.9E-20 181.9 36.1 214 645-862 343-569 (615)
20 KOG2002 TPR-containing nuclear 99.7 5.3E-13 1.2E-17 150.8 51.0 553 279-843 146-758 (1018)
21 KOG2002 TPR-containing nuclear 99.7 4.3E-13 9.3E-18 151.5 48.2 544 178-795 146-742 (1018)
22 PRK10049 pgaA outer membrane p 99.7 7.3E-15 1.6E-19 178.6 37.2 185 678-863 247-455 (765)
23 TIGR00990 3a0801s09 mitochondr 99.7 1.2E-14 2.6E-19 173.7 37.9 247 570-863 334-596 (615)
24 PRK15174 Vi polysaccharide exp 99.7 5.7E-15 1.2E-19 175.6 32.3 259 571-835 114-386 (656)
25 PRK10049 pgaA outer membrane p 99.7 1.4E-14 3.1E-19 176.0 36.3 392 368-837 19-463 (765)
26 PRK15174 Vi polysaccharide exp 99.7 1.1E-14 2.4E-19 173.1 31.6 345 476-864 16-381 (656)
27 KOG4318 Bicoid mRNA stability 99.7 7.1E-14 1.5E-18 155.5 33.7 259 214-484 11-290 (1088)
28 KOG4422 Uncharacterized conser 99.7 1.3E-12 2.7E-17 134.1 38.1 328 294-665 116-465 (625)
29 KOG4422 Uncharacterized conser 99.7 6.1E-13 1.3E-17 136.4 35.2 438 193-664 116-592 (625)
30 PRK14574 hmsH outer membrane p 99.7 7E-13 1.5E-17 157.7 41.6 429 342-863 47-512 (822)
31 PRK14574 hmsH outer membrane p 99.6 2E-11 4.3E-16 145.5 40.6 181 273-492 44-230 (822)
32 KOG0495 HAT repeat protein [RN 99.5 2E-09 4.4E-14 116.7 48.3 489 339-878 386-892 (913)
33 KOG2076 RNA polymerase III tra 99.5 1.1E-09 2.4E-14 123.8 45.4 629 207-859 153-890 (895)
34 PF13429 TPR_15: Tetratricopep 99.5 4.2E-14 9.1E-19 151.5 7.4 211 646-861 57-274 (280)
35 KOG2076 RNA polymerase III tra 99.5 3.7E-09 8E-14 119.6 45.0 519 270-827 287-892 (895)
36 KOG2003 TPR repeat-containing 99.4 1.3E-10 2.8E-15 120.0 26.4 208 580-793 503-717 (840)
37 KOG0495 HAT repeat protein [RN 99.4 5.4E-08 1.2E-12 105.9 45.5 460 271-842 414-892 (913)
38 KOG0547 Translocase of outer m 99.3 1.5E-09 3.3E-14 114.1 29.8 186 671-860 363-562 (606)
39 KOG1126 DNA-binding cell divis 99.3 7.1E-11 1.5E-15 129.3 18.9 160 698-863 420-585 (638)
40 KOG1155 Anaphase-promoting com 99.3 8.1E-10 1.8E-14 115.4 25.6 189 667-859 329-531 (559)
41 KOG1126 DNA-binding cell divis 99.3 9.8E-11 2.1E-15 128.2 19.6 271 582-863 334-619 (638)
42 KOG0985 Vesicle coat protein c 99.3 1.5E-06 3.2E-11 99.0 52.0 750 62-876 362-1261(1666)
43 KOG2003 TPR repeat-containing 99.3 5.6E-10 1.2E-14 115.4 22.4 201 646-850 503-709 (840)
44 PRK10747 putative protoheme IX 99.3 5.9E-10 1.3E-14 125.1 24.6 285 478-831 97-391 (398)
45 PRK10747 putative protoheme IX 99.3 4.8E-10 1E-14 125.9 23.7 271 580-861 97-387 (398)
46 TIGR00540 hemY_coli hemY prote 99.3 4.5E-09 9.7E-14 118.7 31.4 253 574-829 125-398 (409)
47 TIGR00540 hemY_coli hemY prote 99.2 1.2E-09 2.6E-14 123.4 25.2 280 578-861 95-396 (409)
48 KOG1173 Anaphase-promoting com 99.2 3.6E-09 7.9E-14 113.6 26.5 254 603-861 249-515 (611)
49 TIGR02521 type_IV_pilW type IV 99.2 2.6E-10 5.6E-15 118.9 17.9 197 667-863 30-231 (234)
50 PF13429 TPR_15: Tetratricopep 99.2 2.9E-11 6.2E-16 129.7 10.9 252 572-830 13-277 (280)
51 KOG1155 Anaphase-promoting com 99.2 1E-07 2.2E-12 100.1 35.2 352 360-794 160-532 (559)
52 KOG0985 Vesicle coat protein c 99.2 3E-06 6.4E-11 96.7 47.4 724 52-848 505-1326(1666)
53 COG2956 Predicted N-acetylgluc 99.2 1.1E-08 2.3E-13 102.5 25.1 312 508-886 47-369 (389)
54 PF13041 PPR_2: PPR repeat fam 99.2 7.3E-11 1.6E-15 88.2 6.1 50 191-240 1-50 (50)
55 PF13041 PPR_2: PPR repeat fam 99.1 9.5E-11 2.1E-15 87.6 5.9 50 292-341 1-50 (50)
56 KOG1173 Anaphase-promoting com 99.1 1E-07 2.2E-12 102.7 29.2 127 462-625 241-373 (611)
57 KOG1915 Cell cycle control pro 99.1 1.2E-06 2.6E-11 92.1 35.9 478 377-862 86-623 (677)
58 KOG4162 Predicted calmodulin-b 99.1 7E-06 1.5E-10 92.1 43.6 213 358-593 317-539 (799)
59 KOG1174 Anaphase-promoting com 99.1 2.9E-07 6.4E-12 95.1 29.9 270 560-834 225-504 (564)
60 PRK12370 invasion protein regu 99.1 1.5E-08 3.2E-13 119.1 23.6 242 613-863 276-534 (553)
61 KOG4162 Predicted calmodulin-b 99.1 2.8E-07 6.1E-12 103.0 31.3 399 459-862 317-781 (799)
62 KOG2047 mRNA splicing factor [ 99.0 3.4E-06 7.3E-11 92.3 38.2 525 264-850 103-709 (835)
63 KOG1840 Kinesin light chain [C 99.0 2E-08 4.3E-13 111.9 21.5 237 568-859 200-474 (508)
64 KOG2047 mRNA splicing factor [ 99.0 1.4E-05 3.1E-10 87.5 42.1 567 157-823 76-716 (835)
65 KOG3616 Selective LIM binding 99.0 4E-05 8.7E-10 84.7 43.7 542 235-841 739-1366(1636)
66 KOG3785 Uncharacterized conser 99.0 1.2E-06 2.6E-11 88.7 28.9 436 373-871 66-521 (557)
67 TIGR02521 type_IV_pilW type IV 99.0 7.7E-08 1.7E-12 100.1 21.5 197 598-832 31-234 (234)
68 KOG3616 Selective LIM binding 98.9 1.1E-05 2.4E-10 88.9 37.4 527 174-858 456-1018(1636)
69 COG3071 HemY Uncharacterized e 98.9 3.3E-07 7.1E-12 95.2 23.8 274 478-793 97-385 (400)
70 PRK11189 lipoprotein NlpI; Pro 98.9 2.7E-08 5.9E-13 106.8 16.8 209 647-863 40-264 (296)
71 COG3063 PilF Tfp pilus assembl 98.9 5E-08 1.1E-12 93.6 16.1 162 701-866 37-204 (250)
72 KOG1840 Kinesin light chain [C 98.9 7.8E-08 1.7E-12 107.3 19.8 160 703-862 245-436 (508)
73 KOG0547 Translocase of outer m 98.9 1.1E-06 2.3E-11 93.2 26.4 187 641-831 368-567 (606)
74 COG3071 HemY Uncharacterized e 98.9 9E-07 1.9E-11 92.0 24.9 284 408-726 97-388 (400)
75 PRK12370 invasion protein regu 98.9 8.3E-08 1.8E-12 112.8 20.1 209 647-862 275-500 (553)
76 KOG3617 WD40 and TPR repeat-co 98.9 3.1E-06 6.8E-11 94.5 29.9 402 160-616 724-1189(1416)
77 KOG2376 Signal recognition par 98.8 1.3E-05 2.7E-10 87.4 32.2 366 476-859 90-515 (652)
78 PRK11189 lipoprotein NlpI; Pro 98.8 3.1E-07 6.7E-12 98.7 19.7 205 598-844 64-280 (296)
79 KOG2376 Signal recognition par 98.8 2.6E-05 5.7E-10 85.0 33.7 427 303-754 21-512 (652)
80 COG2956 Predicted N-acetylgluc 98.8 2.6E-06 5.6E-11 85.8 22.9 220 408-661 48-277 (389)
81 KOG1915 Cell cycle control pro 98.8 2.9E-05 6.2E-10 82.1 31.4 332 564-903 171-535 (677)
82 KOG3785 Uncharacterized conser 98.8 3.9E-05 8.4E-10 78.1 31.2 415 270-772 64-497 (557)
83 KOG1129 TPR repeat-containing 98.7 1.3E-07 2.9E-12 94.5 13.1 222 602-863 227-457 (478)
84 KOG1127 TPR repeat-containing 98.7 0.00077 1.7E-08 78.1 42.1 169 674-847 1013-1192(1238)
85 KOG1127 TPR repeat-containing 98.7 6.3E-05 1.4E-09 86.7 33.5 174 247-423 475-658 (1238)
86 COG3063 PilF Tfp pilus assembl 98.6 3.3E-06 7.1E-11 81.4 18.8 199 600-837 37-243 (250)
87 KOG1129 TPR repeat-containing 98.6 1E-06 2.2E-11 88.4 14.8 221 570-795 226-455 (478)
88 KOG3617 WD40 and TPR repeat-co 98.6 0.00062 1.3E-08 76.9 37.5 568 190-863 723-1358(1416)
89 KOG1156 N-terminal acetyltrans 98.6 0.00013 2.8E-09 80.7 31.9 444 341-828 19-509 (700)
90 KOG1174 Anaphase-promoting com 98.5 1.8E-05 3.9E-10 82.3 22.1 334 567-909 97-519 (564)
91 PF12569 NARP1: NMDA receptor- 98.5 0.00014 3E-09 82.8 30.6 424 403-858 12-514 (517)
92 TIGR03302 OM_YfiO outer membra 98.5 6.9E-06 1.5E-10 85.6 18.0 166 698-864 32-232 (235)
93 PRK15359 type III secretion sy 98.5 1.4E-06 3.1E-11 82.1 11.4 122 719-846 13-137 (144)
94 PF04733 Coatomer_E: Coatomer 98.4 1E-05 2.2E-10 85.6 18.0 245 580-834 14-269 (290)
95 PF04733 Coatomer_E: Coatomer 98.4 4.8E-06 1E-10 88.1 15.0 155 574-764 109-267 (290)
96 cd05804 StaR_like StaR_like; a 98.4 4.9E-05 1.1E-09 84.9 24.2 288 570-861 9-333 (355)
97 PF12854 PPR_1: PPR repeat 98.4 1.9E-07 4.1E-12 62.5 2.5 33 157-189 2-34 (34)
98 KOG1128 Uncharacterized conser 98.4 6.1E-06 1.3E-10 92.1 15.5 222 562-832 393-618 (777)
99 PF12854 PPR_1: PPR repeat 98.4 2.5E-07 5.4E-12 61.9 2.9 33 55-87 2-34 (34)
100 KOG1125 TPR repeat-containing 98.4 5.8E-06 1.3E-10 90.0 14.7 213 576-857 294-520 (579)
101 PF12569 NARP1: NMDA receptor- 98.4 7.2E-05 1.6E-09 85.0 24.2 280 574-861 11-331 (517)
102 KOG1156 N-terminal acetyltrans 98.4 0.00032 6.8E-09 77.7 27.5 383 443-865 20-469 (700)
103 cd05804 StaR_like StaR_like; a 98.3 0.00021 4.5E-09 79.9 26.6 266 597-863 5-292 (355)
104 PLN02789 farnesyltranstransfer 98.3 2.3E-05 5.1E-10 83.9 17.8 210 600-848 39-268 (320)
105 KOG0624 dsRNA-activated protei 98.3 0.00012 2.5E-09 74.6 21.2 281 576-861 47-367 (504)
106 KOG0548 Molecular co-chaperone 98.3 0.0011 2.5E-08 72.1 28.4 99 374-475 12-114 (539)
107 PRK10370 formate-dependent nit 98.3 1.7E-05 3.7E-10 79.1 14.0 153 675-838 23-181 (198)
108 KOG0548 Molecular co-chaperone 98.2 0.00096 2.1E-08 72.6 27.2 237 573-848 230-473 (539)
109 PRK10370 formate-dependent nit 98.2 2E-05 4.4E-10 78.6 13.4 146 706-864 23-173 (198)
110 TIGR03302 OM_YfiO outer membra 98.2 4.2E-05 9E-10 79.7 15.7 164 669-833 34-235 (235)
111 KOG0624 dsRNA-activated protei 98.2 0.00084 1.8E-08 68.5 23.6 332 471-871 44-401 (504)
112 PRK15179 Vi polysaccharide bio 98.1 2.7E-05 5.9E-10 91.9 14.8 186 633-837 27-224 (694)
113 PRK15363 pathogenicity island 98.1 1.9E-05 4.1E-10 72.9 10.1 118 769-909 35-154 (157)
114 PRK04841 transcriptional regul 98.1 0.0064 1.4E-07 77.3 36.5 360 372-762 349-760 (903)
115 KOG1914 mRNA cleavage and poly 98.1 0.026 5.6E-07 61.8 34.4 172 614-786 347-527 (656)
116 KOG1128 Uncharacterized conser 98.1 5.6E-05 1.2E-09 84.6 14.3 195 663-863 393-615 (777)
117 COG5010 TadD Flp pilus assembl 98.1 7.5E-05 1.6E-09 74.0 13.6 159 667-828 66-229 (257)
118 KOG4340 Uncharacterized conser 98.1 0.00097 2.1E-08 66.7 21.0 82 675-758 248-335 (459)
119 PRK04841 transcriptional regul 98.0 0.0016 3.5E-08 82.7 28.8 189 672-860 535-756 (903)
120 COG5010 TadD Flp pilus assembl 98.0 0.00022 4.7E-09 70.8 15.5 131 730-863 63-196 (257)
121 PRK15359 type III secretion sy 98.0 6.3E-05 1.4E-09 70.9 11.0 116 691-808 16-133 (144)
122 PRK15179 Vi polysaccharide bio 98.0 0.00019 4.1E-09 85.0 17.2 194 597-809 27-230 (694)
123 PLN02789 farnesyltranstransfer 98.0 0.00022 4.8E-09 76.5 16.2 169 677-848 46-230 (320)
124 PRK14720 transcript cleavage f 98.0 0.0005 1.1E-08 82.0 20.3 142 701-862 118-282 (906)
125 KOG1125 TPR repeat-containing 97.9 0.00026 5.7E-09 77.5 16.3 189 569-760 321-525 (579)
126 TIGR00756 PPR pentatricopeptid 97.9 1.1E-05 2.4E-10 54.9 3.9 35 599-633 1-35 (35)
127 COG4783 Putative Zn-dependent 97.9 0.00026 5.7E-09 76.2 15.6 114 743-859 316-432 (484)
128 TIGR00756 PPR pentatricopeptid 97.9 1.6E-05 3.4E-10 54.1 4.3 35 92-126 1-35 (35)
129 KOG1070 rRNA processing protei 97.9 0.00028 6E-09 84.4 16.5 199 665-866 1455-1665(1710)
130 TIGR02552 LcrH_SycD type III s 97.9 0.00014 2.9E-09 68.2 11.8 113 721-836 5-120 (135)
131 TIGR02552 LcrH_SycD type III s 97.9 9.5E-05 2.1E-09 69.3 10.4 100 764-863 11-113 (135)
132 COG4783 Putative Zn-dependent 97.9 0.0015 3.2E-08 70.6 20.1 145 699-864 306-454 (484)
133 KOG2053 Mitochondrial inherita 97.9 0.094 2E-06 61.1 35.3 90 671-761 439-535 (932)
134 KOG4340 Uncharacterized conser 97.8 0.00096 2.1E-08 66.7 16.4 280 571-860 14-335 (459)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00028 6E-09 77.2 13.4 127 671-800 172-299 (395)
136 KOG0553 TPR repeat-containing 97.8 0.0001 2.3E-09 74.4 9.1 94 707-836 89-184 (304)
137 KOG1070 rRNA processing protei 97.8 0.00085 1.8E-08 80.4 17.7 196 633-831 1458-1664(1710)
138 PF13812 PPR_3: Pentatricopept 97.7 4.2E-05 9E-10 51.6 4.1 34 193-226 1-34 (34)
139 PF13812 PPR_3: Pentatricopept 97.7 5.4E-05 1.2E-09 51.0 4.2 34 294-327 1-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00027 5.9E-09 77.3 11.4 120 704-861 174-294 (395)
141 PF09976 TPR_21: Tetratricopep 97.7 0.0015 3.2E-08 61.9 14.8 125 701-828 14-145 (145)
142 KOG3060 Uncharacterized conser 97.6 0.0086 1.9E-07 59.2 18.8 125 709-835 96-225 (289)
143 KOG3081 Vesicle coat complex C 97.6 0.019 4.1E-07 57.3 21.1 174 656-835 96-276 (299)
144 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.00068 1.5E-08 61.7 10.4 101 736-836 5-111 (119)
145 PRK02603 photosystem I assembl 97.5 0.00092 2E-08 65.5 11.5 128 699-850 35-166 (172)
146 KOG3060 Uncharacterized conser 97.5 0.0028 6E-08 62.5 14.3 150 702-854 55-207 (289)
147 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.5E-09 48.2 3.2 31 599-629 1-31 (31)
148 PF09976 TPR_21: Tetratricopep 97.5 0.00093 2E-08 63.3 10.6 121 738-860 17-143 (145)
149 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.7E-09 47.9 3.3 31 92-122 1-31 (31)
150 PRK10153 DNA-binding transcrip 97.4 0.0024 5.2E-08 73.4 15.4 140 696-836 334-488 (517)
151 PF13432 TPR_16: Tetratricopep 97.3 0.00058 1.3E-08 54.2 6.3 60 776-835 4-65 (65)
152 KOG2053 Mitochondrial inherita 97.3 0.59 1.3E-05 54.9 38.1 121 176-300 23-151 (932)
153 PLN03088 SGT1, suppressor of 97.3 0.00097 2.1E-08 73.4 10.1 102 739-843 8-112 (356)
154 cd00189 TPR Tetratricopeptide 97.3 0.00091 2E-08 57.5 8.1 88 774-861 5-94 (100)
155 PF12895 Apc3: Anaphase-promot 97.3 9.4E-05 2E-09 62.4 1.4 55 803-858 27-81 (84)
156 PLN03088 SGT1, suppressor of 97.3 0.0012 2.6E-08 72.7 10.1 105 704-811 7-113 (356)
157 PRK14720 transcript cleavage f 97.2 0.036 7.9E-07 66.7 21.8 85 736-837 226-313 (906)
158 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0019 4.1E-08 58.7 8.9 95 770-864 3-105 (119)
159 PF13414 TPR_11: TPR repeat; P 97.2 0.00036 7.9E-09 56.2 3.5 61 800-860 2-63 (69)
160 cd00189 TPR Tetratricopeptide 97.2 0.0031 6.8E-08 54.0 9.9 59 702-760 3-61 (100)
161 KOG3081 Vesicle coat complex C 97.2 0.04 8.7E-07 55.1 17.9 106 745-854 149-260 (299)
162 PF13431 TPR_17: Tetratricopep 97.1 9.9E-05 2.1E-09 49.3 -0.2 32 824-855 2-33 (34)
163 CHL00033 ycf3 photosystem I as 97.1 0.01 2.2E-07 57.9 13.6 108 699-834 35-153 (168)
164 PRK15331 chaperone protein Sic 97.1 0.0081 1.8E-07 56.1 11.8 101 763-863 30-133 (165)
165 PF14938 SNAP: Soluble NSF att 97.1 0.035 7.6E-07 59.2 18.3 150 672-832 98-268 (282)
166 KOG1914 mRNA cleavage and poly 97.0 0.76 1.6E-05 50.9 33.3 155 699-856 366-531 (656)
167 PF13432 TPR_16: Tetratricopep 97.0 0.00053 1.1E-08 54.5 3.1 57 807-863 3-59 (65)
168 PRK02603 photosystem I assembl 97.0 0.0022 4.8E-08 62.8 8.1 49 802-850 73-121 (172)
169 CHL00033 ycf3 photosystem I as 97.0 0.002 4.3E-08 62.9 7.3 88 770-857 36-135 (168)
170 PF04840 Vps16_C: Vps16, C-ter 97.0 0.75 1.6E-05 49.5 28.8 100 677-792 186-285 (319)
171 KOG0550 Molecular chaperone (D 97.0 0.005 1.1E-07 64.9 10.2 159 700-863 169-350 (486)
172 PF12895 Apc3: Anaphase-promot 96.9 0.0015 3.3E-08 55.0 5.3 79 712-794 2-83 (84)
173 PF05843 Suf: Suppressor of fo 96.9 0.011 2.5E-07 62.6 13.0 135 700-836 2-142 (280)
174 COG3898 Uncharacterized membra 96.9 0.11 2.4E-06 54.7 19.1 274 570-856 85-384 (531)
175 COG4235 Cytochrome c biogenesi 96.9 0.0025 5.5E-08 65.2 7.1 100 768-867 155-259 (287)
176 KOG1538 Uncharacterized conser 96.7 0.19 4E-06 56.2 20.4 166 575-801 640-806 (1081)
177 PF14559 TPR_19: Tetratricopep 96.7 0.0015 3.3E-08 52.4 3.5 49 813-861 3-51 (68)
178 KOG0553 TPR repeat-containing 96.7 0.0042 9.1E-08 63.1 7.2 87 776-862 88-176 (304)
179 COG4700 Uncharacterized protei 96.7 0.018 4E-07 53.9 10.6 94 764-857 84-182 (251)
180 PF13414 TPR_11: TPR repeat; P 96.7 0.0026 5.6E-08 51.2 4.8 63 770-832 4-69 (69)
181 PF13371 TPR_9: Tetratricopept 96.7 0.0028 6.1E-08 51.6 4.9 54 809-862 3-56 (73)
182 PF14559 TPR_19: Tetratricopep 96.7 0.00097 2.1E-08 53.5 2.0 55 745-802 3-59 (68)
183 PF04840 Vps16_C: Vps16, C-ter 96.6 1.1 2.4E-05 48.2 25.3 102 573-690 183-284 (319)
184 COG3898 Uncharacterized membra 96.6 0.82 1.8E-05 48.5 22.5 243 601-852 85-346 (531)
185 PF13428 TPR_14: Tetratricopep 96.5 0.0022 4.7E-08 46.1 2.8 42 802-843 2-43 (44)
186 PF14938 SNAP: Soluble NSF att 96.5 0.15 3.3E-06 54.4 18.1 129 703-845 98-242 (282)
187 PRK15363 pathogenicity island 96.5 0.017 3.6E-07 53.8 8.9 88 673-761 40-131 (157)
188 PF08579 RPM2: Mitochondrial r 96.4 0.026 5.6E-07 48.6 9.1 79 298-376 29-116 (120)
189 PF13281 DUF4071: Domain of un 96.4 0.17 3.6E-06 54.8 17.4 155 677-834 150-338 (374)
190 PF10037 MRP-S27: Mitochondria 96.4 0.027 5.9E-07 62.1 11.7 82 296-377 105-186 (429)
191 PF12688 TPR_5: Tetratrico pep 96.4 0.055 1.2E-06 48.5 11.4 91 704-794 6-100 (120)
192 PF05843 Suf: Suppressor of fo 96.3 0.045 9.9E-07 58.1 12.7 127 600-728 3-136 (280)
193 PRK10866 outer membrane biogen 96.3 0.22 4.8E-06 51.5 17.3 161 702-863 35-240 (243)
194 PRK10153 DNA-binding transcrip 96.3 0.029 6.3E-07 64.7 11.5 130 729-862 333-480 (517)
195 PF10037 MRP-S27: Mitochondria 96.2 0.037 8E-07 61.1 11.4 128 215-342 50-186 (429)
196 PF13371 TPR_9: Tetratricopept 96.2 0.007 1.5E-07 49.3 4.4 62 777-838 3-66 (73)
197 PF08579 RPM2: Mitochondrial r 96.2 0.034 7.3E-07 48.0 8.4 79 399-477 29-116 (120)
198 PRK10803 tol-pal system protei 96.1 0.059 1.3E-06 56.2 11.9 102 702-835 146-251 (263)
199 KOG1538 Uncharacterized conser 96.1 0.7 1.5E-05 51.9 20.1 81 331-420 749-829 (1081)
200 PRK10803 tol-pal system protei 96.0 0.024 5.3E-07 59.0 8.6 93 771-863 145-245 (263)
201 COG4700 Uncharacterized protei 96.0 0.16 3.5E-06 47.9 12.6 128 729-861 85-219 (251)
202 KOG2041 WD40 repeat protein [G 96.0 4 8.7E-05 46.6 25.8 56 564-624 849-904 (1189)
203 KOG2796 Uncharacterized conser 96.0 0.39 8.4E-06 48.0 15.7 163 570-733 139-319 (366)
204 COG0457 NrfG FOG: TPR repeat [ 95.9 1.6 3.4E-05 44.4 22.3 190 668-861 59-262 (291)
205 KOG2114 Vacuolar assembly/sort 95.9 3.9 8.4E-05 48.1 25.2 145 267-419 338-487 (933)
206 PF12688 TPR_5: Tetratrico pep 95.7 0.044 9.5E-07 49.2 7.8 54 803-856 40-96 (120)
207 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.021 4.7E-07 62.2 6.6 60 801-860 75-137 (453)
208 PF06239 ECSIT: Evolutionarily 95.7 0.067 1.5E-06 52.2 9.2 96 182-277 34-152 (228)
209 KOG2114 Vacuolar assembly/sort 95.6 4.4 9.6E-05 47.6 24.6 118 64-189 338-458 (933)
210 KOG2041 WD40 repeat protein [G 95.6 5.6 0.00012 45.5 26.4 126 377-520 747-876 (1189)
211 PF06239 ECSIT: Evolutionarily 95.5 0.099 2.2E-06 51.1 9.8 96 283-378 34-152 (228)
212 KOG2280 Vacuolar assembly/sort 95.5 6.8 0.00015 45.5 25.5 101 677-792 693-793 (829)
213 PRK10866 outer membrane biogen 95.4 2.7 6E-05 43.4 20.8 58 603-662 37-98 (243)
214 KOG0543 FKBP-type peptidyl-pro 95.3 0.22 4.9E-06 53.3 12.2 126 740-910 215-340 (397)
215 KOG0550 Molecular chaperone (D 95.1 3.4 7.3E-05 44.5 20.0 220 575-836 177-407 (486)
216 COG0457 NrfG FOG: TPR repeat [ 95.1 2.9 6.2E-05 42.5 20.8 189 642-833 68-268 (291)
217 PF13424 TPR_12: Tetratricopep 95.0 0.095 2.1E-06 43.2 7.0 62 700-761 6-74 (78)
218 PF07079 DUF1347: Protein of u 95.0 7 0.00015 42.8 36.2 217 296-524 79-326 (549)
219 KOG2796 Uncharacterized conser 95.0 0.95 2.1E-05 45.4 14.5 173 671-843 139-328 (366)
220 KOG2066 Vacuolar assembly/sort 95.0 8.7 0.00019 45.0 24.0 46 466-511 393-438 (846)
221 PF13525 YfiO: Outer membrane 94.9 0.63 1.4E-05 46.8 14.2 152 704-855 10-198 (203)
222 PF13424 TPR_12: Tetratricopep 94.9 0.034 7.4E-07 45.9 4.1 29 802-830 47-75 (78)
223 PF00515 TPR_1: Tetratricopept 94.9 0.048 1E-06 36.4 4.1 33 802-834 2-34 (34)
224 PF07719 TPR_2: Tetratricopept 94.8 0.069 1.5E-06 35.5 4.7 33 802-834 2-34 (34)
225 PF12921 ATP13: Mitochondrial 94.8 0.18 4E-06 45.7 8.7 83 733-815 2-102 (126)
226 COG4105 ComL DNA uptake lipopr 94.7 4.4 9.6E-05 41.1 18.9 164 700-864 35-233 (254)
227 PF03704 BTAD: Bacterial trans 94.7 0.18 3.9E-06 47.7 9.1 109 742-862 15-123 (146)
228 KOG2280 Vacuolar assembly/sort 94.7 6.8 0.00015 45.6 22.3 339 221-623 425-795 (829)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.22 4.8E-06 54.7 10.5 65 697-762 73-141 (453)
230 COG4235 Cytochrome c biogenesi 94.7 0.49 1.1E-05 48.9 12.4 105 730-836 152-262 (287)
231 PF04053 Coatomer_WDAD: Coatom 94.6 0.12 2.5E-06 58.3 8.5 131 708-864 270-402 (443)
232 PRK11906 transcriptional regul 94.2 0.64 1.4E-05 51.2 12.6 142 714-859 273-431 (458)
233 KOG1130 Predicted G-alpha GTPa 93.7 0.22 4.8E-06 52.7 7.8 124 734-857 196-337 (639)
234 KOG4555 TPR repeat-containing 93.7 0.25 5.5E-06 43.6 6.9 83 778-860 52-140 (175)
235 PF13525 YfiO: Outer membrane 93.7 6.6 0.00014 39.4 18.4 20 607-626 14-33 (203)
236 PF04184 ST7: ST7 protein; In 93.7 3 6.4E-05 46.3 16.4 55 705-759 265-321 (539)
237 KOG1920 IkappaB kinase complex 93.7 6 0.00013 48.5 20.1 162 479-699 894-1057(1265)
238 PF03704 BTAD: Bacterial trans 93.7 0.39 8.4E-06 45.3 9.1 71 701-771 64-138 (146)
239 PF04053 Coatomer_WDAD: Coatom 93.6 0.8 1.7E-05 51.7 12.7 106 675-792 325-438 (443)
240 smart00299 CLH Clathrin heavy 93.3 3.4 7.5E-05 38.5 14.8 125 637-812 11-136 (140)
241 PF09205 DUF1955: Domain of un 93.2 1.4 3.1E-05 39.3 10.6 140 710-867 13-152 (161)
242 COG1729 Uncharacterized protei 93.2 0.6 1.3E-05 47.6 9.7 94 701-795 144-241 (262)
243 PRK11906 transcriptional regul 93.1 0.57 1.2E-05 51.6 10.0 115 748-862 273-400 (458)
244 COG3118 Thioredoxin domain-con 93.0 1.2 2.6E-05 45.9 11.5 121 739-862 140-264 (304)
245 PF13512 TPR_18: Tetratricopep 93.0 4 8.6E-05 37.6 13.8 118 702-835 13-133 (142)
246 PF04184 ST7: ST7 protein; In 93.0 0.87 1.9E-05 50.2 11.1 218 711-947 180-412 (539)
247 COG4105 ComL DNA uptake lipopr 92.4 5.6 0.00012 40.4 15.0 125 739-863 40-195 (254)
248 KOG0543 FKBP-type peptidyl-pro 92.3 1.5 3.2E-05 47.3 11.5 137 706-863 215-354 (397)
249 KOG4555 TPR repeat-containing 92.2 1.1 2.4E-05 39.8 8.6 57 706-762 50-106 (175)
250 PF12921 ATP13: Mitochondrial 92.2 1.1 2.3E-05 40.8 9.2 49 729-777 48-96 (126)
251 KOG1130 Predicted G-alpha GTPa 92.2 4.4 9.5E-05 43.4 14.5 153 670-850 197-370 (639)
252 PF08631 SPO22: Meiosis protei 92.1 11 0.00024 40.0 18.4 117 578-695 4-148 (278)
253 PF10300 DUF3808: Protein of u 91.9 1.1 2.4E-05 51.4 11.1 118 713-831 247-377 (468)
254 PRK12798 chemotaxis protein; R 91.9 22 0.00048 39.0 19.8 208 681-911 125-347 (421)
255 PF13512 TPR_18: Tetratricopep 91.9 0.64 1.4E-05 42.7 7.2 58 780-837 21-83 (142)
256 KOG1920 IkappaB kinase complex 91.9 17 0.00036 44.9 20.5 109 671-795 942-1052(1265)
257 KOG2066 Vacuolar assembly/sort 91.7 18 0.00039 42.5 19.7 47 366-412 394-440 (846)
258 PF07079 DUF1347: Protein of u 91.5 25 0.00055 38.7 32.7 71 789-860 444-520 (549)
259 KOG1941 Acetylcholine receptor 91.4 1.6 3.5E-05 45.9 10.2 129 702-830 125-275 (518)
260 PRK15331 chaperone protein Sic 91.4 3.6 7.8E-05 38.8 11.7 90 708-800 46-136 (165)
261 PF13181 TPR_8: Tetratricopept 91.1 0.36 7.7E-06 32.0 3.7 33 802-834 2-34 (34)
262 COG3118 Thioredoxin domain-con 91.1 4.6 0.0001 41.8 13.0 156 705-861 140-299 (304)
263 KOG3941 Intermediate in Toll s 91.0 1.4 3.1E-05 44.6 9.2 100 179-278 51-173 (406)
264 KOG1941 Acetylcholine receptor 90.8 20 0.00043 38.1 17.3 190 570-759 46-272 (518)
265 KOG2610 Uncharacterized conser 90.5 3 6.5E-05 43.4 11.0 151 681-836 116-284 (491)
266 COG1729 Uncharacterized protei 90.4 2.9 6.3E-05 42.8 11.0 101 735-836 144-250 (262)
267 smart00299 CLH Clathrin heavy 89.9 9.1 0.0002 35.6 13.6 75 444-522 21-95 (140)
268 PF00637 Clathrin: Region in C 89.3 0.32 6.9E-06 45.7 3.1 73 548-623 23-95 (143)
269 KOG3941 Intermediate in Toll s 89.1 2.7 5.8E-05 42.7 9.3 100 382-481 52-174 (406)
270 PF10300 DUF3808: Protein of u 88.8 5.2 0.00011 46.0 13.0 79 683-761 248-333 (468)
271 PF13176 TPR_7: Tetratricopept 87.9 0.85 1.8E-05 30.8 3.7 28 803-830 1-28 (36)
272 PF02259 FAT: FAT domain; Int 87.9 31 0.00067 38.0 18.5 143 698-846 145-303 (352)
273 COG4785 NlpI Lipoprotein NlpI, 87.8 6.5 0.00014 38.5 10.6 178 679-862 76-264 (297)
274 PF13428 TPR_14: Tetratricopep 87.7 1.8 3.9E-05 30.8 5.5 36 701-737 3-39 (44)
275 KOG4648 Uncharacterized conser 87.7 2 4.3E-05 44.7 7.6 49 804-856 168-216 (536)
276 KOG2610 Uncharacterized conser 87.4 6.8 0.00015 41.0 11.1 149 610-759 115-273 (491)
277 PF00637 Clathrin: Region in C 87.4 0.19 4E-06 47.3 0.2 85 335-422 13-97 (143)
278 PF13281 DUF4071: Domain of un 87.0 12 0.00026 40.9 13.5 18 817-834 242-259 (374)
279 KOG4279 Serine/threonine prote 86.7 4.7 0.0001 46.5 10.4 182 600-834 203-399 (1226)
280 PF09613 HrpB1_HrpK: Bacterial 86.7 8.3 0.00018 36.3 10.5 89 741-832 18-108 (160)
281 PF13176 TPR_7: Tetratricopept 86.3 1.1 2.3E-05 30.3 3.4 27 701-727 1-27 (36)
282 KOG4234 TPR repeat-containing 85.4 2.1 4.6E-05 41.2 5.9 62 803-864 136-197 (271)
283 PF04097 Nic96: Nup93/Nic96; 85.3 92 0.002 37.3 26.3 22 779-800 515-536 (613)
284 COG3629 DnrI DNA-binding trans 84.8 3.4 7.4E-05 43.0 7.8 71 568-638 154-232 (280)
285 KOG1258 mRNA processing protei 84.4 84 0.0018 36.2 25.3 181 667-850 296-490 (577)
286 PF00515 TPR_1: Tetratricopept 84.3 2.2 4.8E-05 28.1 4.2 31 701-732 3-33 (34)
287 PRK15180 Vi polysaccharide bio 84.2 5.3 0.00011 43.6 8.9 127 711-842 301-433 (831)
288 COG5107 RNA14 Pre-mRNA 3'-end 83.1 80 0.0017 34.9 29.9 70 260-329 39-111 (660)
289 KOG2300 Uncharacterized conser 82.9 42 0.0009 37.4 14.9 207 685-912 299-542 (629)
290 PF07035 Mic1: Colon cancer-as 82.8 24 0.00052 33.8 11.9 134 314-459 14-149 (167)
291 PRK09687 putative lyase; Provi 82.7 70 0.0015 33.9 24.6 73 566-643 205-277 (280)
292 PF14853 Fis1_TPR_C: Fis1 C-te 82.3 2 4.4E-05 32.0 3.6 30 807-836 7-36 (53)
293 PF07035 Mic1: Colon cancer-as 81.7 50 0.0011 31.6 14.6 134 350-525 15-149 (167)
294 PF13170 DUF4003: Protein of u 81.3 71 0.0015 34.1 16.2 133 614-777 78-225 (297)
295 KOG0403 Neoplastic transformat 80.2 1E+02 0.0022 34.1 17.2 58 368-425 513-573 (645)
296 smart00028 TPR Tetratricopepti 79.7 3.1 6.8E-05 26.1 3.7 31 803-833 3-33 (34)
297 COG4649 Uncharacterized protei 79.7 58 0.0013 31.1 13.3 120 709-829 68-195 (221)
298 PF09613 HrpB1_HrpK: Bacterial 79.0 6.6 0.00014 36.9 6.7 51 813-863 22-72 (160)
299 TIGR02561 HrpB1_HrpK type III 78.9 8.8 0.00019 35.5 7.2 52 814-865 23-74 (153)
300 PRK10941 hypothetical protein; 78.7 4.3 9.4E-05 42.4 6.0 82 803-907 183-264 (269)
301 COG2976 Uncharacterized protei 78.5 63 0.0014 31.6 13.0 92 739-834 95-192 (207)
302 PRK11619 lytic murein transgly 78.4 1.6E+02 0.0035 35.4 35.3 56 470-526 104-159 (644)
303 PF07719 TPR_2: Tetratricopept 78.4 4.7 0.0001 26.3 4.2 31 701-732 3-33 (34)
304 KOG1585 Protein required for f 78.1 36 0.00079 34.3 11.6 203 599-824 32-250 (308)
305 PF13374 TPR_10: Tetratricopep 77.8 4.9 0.00011 27.7 4.4 28 802-829 3-30 (42)
306 PF13170 DUF4003: Protein of u 77.7 40 0.00086 36.0 13.0 60 412-471 160-223 (297)
307 COG4785 NlpI Lipoprotein NlpI, 77.0 5.7 0.00012 38.9 5.7 87 746-835 78-167 (297)
308 PRK09687 putative lyase; Provi 75.5 1.1E+02 0.0025 32.3 24.5 75 462-541 203-277 (280)
309 PF13174 TPR_6: Tetratricopept 75.4 5 0.00011 25.9 3.7 30 805-834 4-33 (33)
310 KOG1586 Protein required for f 74.1 1E+02 0.0022 31.0 14.3 91 747-837 128-231 (288)
311 PF13374 TPR_10: Tetratricopep 74.0 5.6 0.00012 27.5 3.9 28 700-727 3-30 (42)
312 PF10602 RPN7: 26S proteasome 73.8 15 0.00032 35.8 8.0 59 670-728 38-102 (177)
313 COG3947 Response regulator con 73.6 94 0.002 32.4 13.4 55 808-862 286-340 (361)
314 PF08631 SPO22: Meiosis protei 73.3 1.3E+02 0.0028 31.9 20.1 16 506-521 256-271 (278)
315 PF13431 TPR_17: Tetratricopep 72.8 3.8 8.3E-05 27.2 2.5 21 732-752 12-32 (34)
316 COG3629 DnrI DNA-binding trans 72.4 23 0.0005 37.0 9.3 69 702-771 156-229 (280)
317 PRK11619 lytic murein transgly 72.4 2.3E+02 0.0049 34.2 27.6 258 572-842 104-383 (644)
318 PF02259 FAT: FAT domain; Int 72.3 56 0.0012 35.9 13.4 64 800-863 145-212 (352)
319 KOG4234 TPR repeat-containing 72.2 24 0.00051 34.4 8.4 27 810-836 177-203 (271)
320 KOG0276 Vesicle coat complex C 72.0 46 0.00099 38.1 11.7 101 273-390 647-747 (794)
321 COG4455 ImpE Protein of avirul 71.9 1E+02 0.0023 30.6 12.7 124 702-836 4-140 (273)
322 TIGR02508 type_III_yscG type I 71.6 30 0.00065 29.5 7.8 62 169-233 46-107 (115)
323 KOG2396 HAT (Half-A-TPR) repea 71.6 1.8E+02 0.004 32.8 26.6 236 588-835 303-565 (568)
324 TIGR02561 HrpB1_HrpK type III 71.5 57 0.0012 30.4 10.4 64 746-812 23-88 (153)
325 PF10602 RPN7: 26S proteasome 71.5 55 0.0012 31.9 11.3 56 600-655 38-95 (177)
326 PF13181 TPR_8: Tetratricopept 71.5 6.7 0.00014 25.7 3.6 27 701-727 3-29 (34)
327 PF10345 Cohesin_load: Cohesin 71.4 2.3E+02 0.0051 34.0 33.1 58 805-862 538-604 (608)
328 COG1747 Uncharacterized N-term 71.0 1.7E+02 0.0037 33.1 15.5 189 597-794 65-284 (711)
329 PHA02875 ankyrin repeat protei 70.7 1.4E+02 0.003 33.8 16.4 148 168-328 71-229 (413)
330 KOG1585 Protein required for f 70.5 1.3E+02 0.0028 30.6 17.8 196 639-859 37-251 (308)
331 PF07720 TPR_3: Tetratricopept 70.3 11 0.00023 25.5 4.2 32 803-834 3-36 (36)
332 COG4649 Uncharacterized protei 69.7 41 0.00089 32.0 9.2 53 376-428 70-127 (221)
333 KOG4648 Uncharacterized conser 68.5 8.3 0.00018 40.4 4.9 81 777-857 105-187 (536)
334 PF11207 DUF2989: Protein of u 67.7 12 0.00027 36.6 5.7 69 786-854 123-197 (203)
335 COG2909 MalT ATP-dependent tra 67.2 1.6E+02 0.0034 35.9 15.3 49 712-760 471-524 (894)
336 PRK15180 Vi polysaccharide bio 67.0 66 0.0014 35.6 11.4 138 746-888 302-442 (831)
337 PF02284 COX5A: Cytochrome c o 65.2 19 0.0004 30.9 5.5 47 788-834 32-78 (108)
338 KOG1308 Hsp70-interacting prot 65.1 4.4 9.6E-05 42.6 2.3 85 782-866 127-213 (377)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 65.1 19 0.00041 30.5 5.4 44 788-831 29-72 (103)
340 KOG1464 COP9 signalosome, subu 64.9 1.7E+02 0.0037 30.0 15.9 245 579-831 39-329 (440)
341 KOG0276 Vesicle coat complex C 64.9 54 0.0012 37.5 10.5 39 579-620 598-636 (794)
342 KOG1550 Extracellular protein 64.5 1E+02 0.0022 36.5 13.8 157 709-869 259-431 (552)
343 PF09205 DUF1955: Domain of un 64.3 94 0.002 28.3 9.8 63 297-360 89-151 (161)
344 KOG4570 Uncharacterized conser 64.3 36 0.00078 35.6 8.4 98 258-359 59-165 (418)
345 PRK13800 putative oxidoreducta 63.4 4E+02 0.0088 33.8 23.1 17 769-785 789-805 (897)
346 KOG1586 Protein required for f 62.2 93 0.002 31.3 10.4 94 743-836 83-189 (288)
347 KOG0376 Serine-threonine phosp 61.9 18 0.00039 40.2 6.3 83 779-861 14-98 (476)
348 PF10579 Rapsyn_N: Rapsyn N-te 61.4 14 0.00029 30.0 3.9 47 745-791 18-65 (80)
349 PF09670 Cas_Cas02710: CRISPR- 61.3 91 0.002 34.7 11.9 123 708-830 140-270 (379)
350 PF06957 COPI_C: Coatomer (COP 61.1 26 0.00055 39.0 7.4 107 710-833 215-332 (422)
351 KOG4570 Uncharacterized conser 61.1 24 0.00053 36.8 6.6 101 156-258 58-165 (418)
352 PF06552 TOM20_plant: Plant sp 61.0 9.8 0.00021 36.5 3.6 124 716-867 8-139 (186)
353 KOG4507 Uncharacterized conser 60.4 16 0.00035 41.3 5.6 94 745-841 619-716 (886)
354 PF15161 Neuropep_like: Neurop 60.2 2.3 5.1E-05 30.9 -0.5 12 959-970 11-22 (65)
355 PF13934 ELYS: Nuclear pore co 59.8 1.5E+02 0.0033 30.2 12.3 98 710-815 89-186 (226)
356 PF04190 DUF410: Protein of un 59.0 2.3E+02 0.0051 29.6 13.9 81 667-762 89-170 (260)
357 PF06552 TOM20_plant: Plant sp 58.8 41 0.0009 32.4 7.3 78 701-779 30-123 (186)
358 COG4455 ImpE Protein of avirul 58.4 24 0.00052 34.9 5.7 44 814-857 14-57 (273)
359 PF11768 DUF3312: Protein of u 57.9 79 0.0017 36.2 10.5 126 673-822 413-544 (545)
360 KOG2471 TPR repeat-containing 57.9 1.9E+02 0.0041 32.5 12.8 196 703-920 104-328 (696)
361 PF13174 TPR_6: Tetratricopept 57.3 15 0.00033 23.5 3.2 23 705-727 6-28 (33)
362 PF13762 MNE1: Mitochondrial s 57.2 76 0.0016 29.5 8.5 77 266-342 42-128 (145)
363 KOG2396 HAT (Half-A-TPR) repea 56.9 78 0.0017 35.6 9.9 82 718-800 90-172 (568)
364 PF07721 TPR_4: Tetratricopept 56.2 6.5 0.00014 24.1 1.1 22 837-858 3-24 (26)
365 PF13762 MNE1: Mitochondrial s 56.0 87 0.0019 29.2 8.7 79 165-243 42-130 (145)
366 TIGR02508 type_III_yscG type I 54.4 1.3E+02 0.0028 25.9 8.5 60 676-737 47-106 (115)
367 PF07163 Pex26: Pex26 protein; 54.1 1.3E+02 0.0028 31.3 10.2 89 706-797 90-186 (309)
368 PF04910 Tcf25: Transcriptiona 52.8 3.6E+02 0.0077 29.8 16.6 97 732-833 99-225 (360)
369 COG4976 Predicted methyltransf 52.4 26 0.00057 34.9 5.0 58 779-836 5-64 (287)
370 COG5107 RNA14 Pre-mRNA 3'-end 51.4 3.9E+02 0.0085 29.9 26.5 140 699-842 397-543 (660)
371 KOG2581 26S proteasome regulat 50.9 3.8E+02 0.0082 29.6 15.1 136 699-834 124-280 (493)
372 PHA02875 ankyrin repeat protei 50.8 2E+02 0.0044 32.4 13.1 148 168-329 38-196 (413)
373 cd02679 MIT_spastin MIT: domai 50.6 16 0.00034 29.9 2.7 65 783-863 3-67 (79)
374 PF11207 DUF2989: Protein of u 49.7 85 0.0018 31.0 8.0 43 746-788 153-197 (203)
375 KOG0292 Vesicle coat complex C 48.5 27 0.00058 41.6 5.1 98 739-863 626-723 (1202)
376 KOG3364 Membrane protein invol 47.6 1.3E+02 0.0029 27.5 8.1 69 766-834 29-104 (149)
377 PF04190 DUF410: Protein of un 47.5 3E+02 0.0066 28.7 12.5 36 566-601 89-124 (260)
378 PF13929 mRNA_stabil: mRNA sta 47.5 3.6E+02 0.0079 28.4 14.1 59 360-418 198-261 (292)
379 PF10345 Cohesin_load: Cohesin 46.6 5.9E+02 0.013 30.6 32.6 80 277-356 153-252 (608)
380 PRK11509 hydrogenase-1 operon 46.1 25 0.00055 32.1 3.7 71 874-961 30-101 (132)
381 KOG1258 mRNA processing protei 46.0 5.4E+02 0.012 30.0 29.4 181 566-747 296-489 (577)
382 KOG3824 Huntingtin interacting 45.2 38 0.00082 35.2 5.0 62 780-841 127-190 (472)
383 PF15469 Sec5: Exocyst complex 45.1 64 0.0014 31.6 6.8 116 703-839 61-177 (182)
384 PF02284 COX5A: Cytochrome c o 45.1 1.5E+02 0.0032 25.7 7.6 59 717-777 28-87 (108)
385 KOG2063 Vacuolar assembly/sort 44.4 5E+02 0.011 32.2 15.0 177 600-794 506-709 (877)
386 KOG4279 Serine/threonine prote 44.3 1.1E+02 0.0023 36.1 8.8 28 962-989 489-516 (1226)
387 PF13929 mRNA_stabil: mRNA sta 44.1 4.1E+02 0.0089 28.0 13.3 52 462-513 199-255 (292)
388 smart00386 HAT HAT (Half-A-TPR 43.7 18 0.00038 23.0 1.8 28 815-842 1-28 (33)
389 KOG2063 Vacuolar assembly/sort 43.5 7.5E+02 0.016 30.8 17.5 127 195-340 506-637 (877)
390 KOG0890 Protein kinase of the 43.2 1.1E+03 0.024 32.8 33.4 109 733-845 1670-1799(2382)
391 PF10366 Vps39_1: Vacuolar sor 43.0 1.8E+02 0.0038 25.7 8.4 27 600-626 41-67 (108)
392 cd00923 Cyt_c_Oxidase_Va Cytoc 42.8 1.4E+02 0.0029 25.6 7.0 60 715-776 23-83 (103)
393 PRK10941 hypothetical protein; 41.8 82 0.0018 33.0 7.1 63 775-837 187-251 (269)
394 PHA03100 ankyrin repeat protei 39.7 5.4E+02 0.012 29.7 14.6 23 64-86 36-58 (480)
395 PRK13342 recombination factor 39.4 6.1E+02 0.013 28.7 14.5 97 225-339 173-275 (413)
396 PF14427 Pput2613-deam: Pput_2 39.2 33 0.00072 29.5 3.0 59 930-988 44-102 (118)
397 PF14853 Fis1_TPR_C: Fis1 C-te 37.9 94 0.002 23.2 4.9 34 705-739 7-40 (53)
398 PF11846 DUF3366: Domain of un 37.8 79 0.0017 31.3 6.2 37 796-832 139-175 (193)
399 PF13934 ELYS: Nuclear pore co 37.6 3E+02 0.0066 28.0 10.4 115 682-804 92-207 (226)
400 PRK13342 recombination factor 36.7 6.7E+02 0.014 28.3 15.0 97 326-440 173-275 (413)
401 KOG3824 Huntingtin interacting 36.7 28 0.0006 36.1 2.6 77 811-899 126-202 (472)
402 KOG2908 26S proteasome regulat 36.5 2.5E+02 0.0053 30.2 9.3 85 705-789 81-177 (380)
403 PF12862 Apc5: Anaphase-promot 35.7 1.6E+02 0.0035 25.0 7.0 26 805-830 45-70 (94)
404 PF14561 TPR_20: Tetratricopep 35.4 36 0.00077 28.8 2.7 33 824-856 11-43 (90)
405 PF11846 DUF3366: Domain of un 34.6 1.5E+02 0.0033 29.2 7.7 53 711-763 120-174 (193)
406 KOG0686 COP9 signalosome, subu 33.7 3.7E+02 0.0081 29.7 10.3 161 668-862 150-331 (466)
407 PF09477 Type_III_YscG: Bacter 33.5 3.2E+02 0.0069 24.0 7.9 48 678-727 50-97 (116)
408 PF10579 Rapsyn_N: Rapsyn N-te 33.5 78 0.0017 25.9 4.1 46 711-756 18-66 (80)
409 PF09986 DUF2225: Uncharacteri 33.5 1.2E+02 0.0025 30.7 6.5 61 802-862 119-192 (214)
410 KOG4642 Chaperone-dependent E3 33.3 2.9E+02 0.0062 28.2 8.8 79 680-759 22-104 (284)
411 KOG4642 Chaperone-dependent E3 33.2 54 0.0012 33.0 3.9 117 742-861 19-143 (284)
412 PF04910 Tcf25: Transcriptiona 32.6 7.2E+02 0.016 27.5 16.1 55 640-694 110-165 (360)
413 KOG1464 COP9 signalosome, subu 32.6 3.9E+02 0.0085 27.6 9.7 127 398-524 68-219 (440)
414 PF11525 CopK: Copper resistan 32.3 22 0.00048 27.6 0.9 20 980-999 8-27 (73)
415 TIGR03504 FimV_Cterm FimV C-te 32.3 74 0.0016 22.7 3.4 24 604-627 5-28 (44)
416 PF14669 Asp_Glu_race_2: Putat 32.2 5E+02 0.011 25.5 12.0 57 637-693 136-206 (233)
417 PF00244 14-3-3: 14-3-3 protei 31.6 5.2E+02 0.011 26.5 11.0 57 604-660 7-64 (236)
418 KOG0890 Protein kinase of the 31.6 1.6E+03 0.035 31.3 27.4 273 572-862 1425-1729(2382)
419 KOG0292 Vesicle coat complex C 31.5 3.7E+02 0.008 32.8 10.6 133 675-831 650-783 (1202)
420 PF14561 TPR_20: Tetratricopep 31.2 1.5E+02 0.0032 25.1 5.8 61 801-861 22-85 (90)
421 PRK13800 putative oxidoreducta 30.5 1.2E+03 0.027 29.5 22.2 265 182-471 624-890 (897)
422 PF14689 SPOB_a: Sensor_kinase 29.9 94 0.002 24.1 4.1 45 716-761 7-51 (62)
423 TIGR03504 FimV_Cterm FimV C-te 29.6 69 0.0015 22.8 3.0 25 502-526 5-29 (44)
424 TIGR00686 phnA alkylphosphonat 29.1 29 0.00062 29.9 1.1 32 958-989 16-48 (109)
425 COG5431 Uncharacterized metal- 28.3 17 0.00037 30.7 -0.3 11 993-1003 47-57 (117)
426 KOG1498 26S proteasome regulat 28.2 8.5E+02 0.018 26.9 17.3 190 665-886 49-263 (439)
427 PF11848 DUF3368: Domain of un 28.0 1.2E+02 0.0026 22.1 4.0 36 100-135 11-46 (48)
428 KOG0545 Aryl-hydrocarbon recep 27.9 6.8E+02 0.015 25.7 10.9 51 807-857 236-286 (329)
429 KOG3507 DNA-directed RNA polym 27.9 23 0.0005 26.4 0.3 10 961-970 20-29 (62)
430 COG2909 MalT ATP-dependent tra 27.8 1.2E+03 0.027 28.7 20.8 248 578-829 426-725 (894)
431 cd08819 CARD_MDA5_2 Caspase ac 27.4 3E+02 0.0066 23.1 6.6 65 248-314 22-86 (88)
432 PF11663 Toxin_YhaV: Toxin wit 27.4 62 0.0013 29.4 2.9 33 609-643 106-138 (140)
433 KOG2659 LisH motif-containing 27.3 6.7E+02 0.015 25.4 10.9 90 702-794 29-128 (228)
434 PF09045 L27_2: L27_2; InterP 26.9 99 0.0021 23.4 3.4 35 896-950 4-38 (58)
435 COG4472 Uncharacterized protei 26.5 1.3E+02 0.0028 24.3 4.1 37 879-918 5-41 (88)
436 cd02965 HyaE HyaE family; HyaE 26.5 1.1E+02 0.0023 27.1 4.3 71 873-961 22-93 (111)
437 PF11848 DUF3368: Domain of un 26.4 1.9E+02 0.0042 21.0 4.9 34 203-236 12-45 (48)
438 COG2178 Predicted RNA-binding 26.3 2E+02 0.0043 28.2 6.2 15 781-795 133-147 (204)
439 KOG4077 Cytochrome c oxidase, 26.2 1.5E+02 0.0034 26.6 5.0 46 787-832 70-115 (149)
440 KOG4718 Non-SMC (structural ma 26.2 14 0.00031 35.8 -1.3 12 959-970 179-190 (235)
441 KOG0403 Neoplastic transformat 25.2 1E+03 0.022 26.8 25.6 59 571-629 513-574 (645)
442 PF14863 Alkyl_sulf_dimr: Alky 25.1 1.2E+02 0.0026 28.2 4.6 66 786-854 58-123 (141)
443 PF09477 Type_III_YscG: Bacter 25.1 4.7E+02 0.01 23.0 8.2 79 344-425 21-99 (116)
444 PF12862 Apc5: Anaphase-promot 25.0 2.4E+02 0.0053 23.8 6.3 52 710-761 9-69 (94)
445 PF10366 Vps39_1: Vacuolar sor 25.0 2.9E+02 0.0063 24.3 6.7 28 396-423 40-67 (108)
446 PRK10564 maltose regulon perip 24.9 1.1E+02 0.0023 32.4 4.6 40 297-336 260-299 (303)
447 PHA02537 M terminase endonucle 24.8 5.7E+02 0.012 26.1 9.5 131 671-833 67-210 (230)
448 KOG2034 Vacuolar sorting prote 24.7 1.4E+03 0.03 28.3 19.9 163 467-648 506-676 (911)
449 COG3043 NapB Nitrate reductase 24.5 56 0.0012 29.9 2.1 35 908-970 61-95 (155)
450 KOG3364 Membrane protein invol 24.1 3.5E+02 0.0076 24.9 6.9 68 731-800 30-103 (149)
451 PF14689 SPOB_a: Sensor_kinase 24.0 81 0.0018 24.4 2.8 30 597-626 22-51 (62)
452 KOG1811 Predicted Zn2+-binding 23.6 1.1E+03 0.023 27.5 12.0 97 772-870 559-655 (1141)
453 KOG0551 Hsp90 co-chaperone CNS 23.5 2.4E+02 0.0052 30.2 6.7 88 770-857 82-175 (390)
454 cd08819 CARD_MDA5_2 Caspase ac 23.2 3.9E+02 0.0086 22.4 6.6 38 376-414 48-85 (88)
455 PF02847 MA3: MA3 domain; Int 23.2 2.5E+02 0.0053 24.7 6.2 23 572-594 7-29 (113)
456 TIGR02710 CRISPR-associated pr 22.7 2.7E+02 0.0059 30.7 7.4 118 738-855 135-266 (380)
457 PF11663 Toxin_YhaV: Toxin wit 22.7 1E+02 0.0023 28.1 3.5 32 103-136 107-138 (140)
458 COG4890 Predicted outer membra 22.7 40 0.00086 22.0 0.6 10 939-948 11-20 (37)
459 COG2912 Uncharacterized conser 22.5 3.1E+02 0.0068 28.6 7.3 56 805-860 185-240 (269)
460 TIGR02414 pepN_proteo aminopep 22.4 8.8E+02 0.019 30.5 12.5 119 737-856 708-835 (863)
461 PRK10564 maltose regulon perip 22.2 1.4E+02 0.003 31.5 4.8 41 397-437 259-299 (303)
462 PHA03100 ankyrin repeat protei 22.2 1.2E+03 0.026 26.7 15.1 14 215-228 50-63 (480)
463 PF04097 Nic96: Nup93/Nic96; 22.2 1.4E+03 0.031 27.4 28.6 209 268-491 116-353 (613)
464 PF14376 Haem_bd: Haem-binding 22.1 33 0.00071 31.7 0.3 10 961-970 41-50 (137)
465 cd00280 TRFH Telomeric Repeat 22.1 4.8E+02 0.01 25.5 7.8 31 806-837 116-146 (200)
466 PF10155 DUF2363: Uncharacteri 21.4 6.3E+02 0.014 23.0 10.0 114 378-493 3-126 (126)
467 PRK14015 pepN aminopeptidase N 21.2 9.5E+02 0.021 30.3 12.6 120 736-856 717-845 (875)
468 COG3947 Response regulator con 21.1 3.1E+02 0.0068 28.8 6.8 56 704-760 284-340 (361)
469 PF14669 Asp_Glu_race_2: Putat 20.9 8.1E+02 0.018 24.1 13.1 97 384-490 96-206 (233)
470 COG5159 RPN6 26S proteasome re 20.8 9.9E+02 0.021 25.1 11.7 237 604-868 9-276 (421)
471 KOG1308 Hsp70-interacting prot 20.7 1E+02 0.0022 33.0 3.5 78 682-760 128-209 (377)
472 KOG1114 Tripeptidyl peptidase 20.6 1E+03 0.022 29.7 11.5 74 716-789 1213-1287(1304)
473 PF13971 Mei4: Meiosis-specifi 20.2 48 0.001 36.1 1.0 29 930-958 13-42 (375)
474 PF07163 Pex26: Pex26 protein; 20.1 1E+03 0.022 25.0 10.2 20 824-843 267-286 (309)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-158 Score=1463.29 Aligned_cols=809 Identities=34% Similarity=0.615 Sum_probs=799.9
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHH
Q 001852 190 VRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSL 269 (1004)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 269 (1004)
.++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHH
Q 001852 270 ISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGR 349 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 349 (1004)
|.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..++++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCC
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVN 429 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 429 (1004)
++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhC
Q 001852 430 YVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEK 509 (1004)
Q Consensus 430 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 509 (1004)
..||+.+|.+|+..|+++.|.++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||+||.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHH
Q 001852 510 EEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYI 589 (1004)
Q Consensus 510 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 589 (1004)
|++++|+++|++|.+.|+.||..||+++|.+|++. +.++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChh
Q 001852 590 FEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPF 669 (1004)
Q Consensus 590 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 669 (1004)
|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.|+++|..+.+.|+.+|..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999986 699999999999999999999999999999999999999999
Q ss_pred HHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCC
Q 001852 670 VTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 670 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~ 748 (1004)
++|+|+++|+|+|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+. +.||.+||+.++.+|++.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001852 749 VDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~ 828 (1004)
+++|+++|++|.+++++.|+.+||+||+++|+|+|+++||++++++||++||..+|++|+++|+.|||++.|+.++++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 001852 829 ELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMI 908 (1004)
Q Consensus 829 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 908 (1004)
+++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|.|||||||++|++|.|++||++||++++||.+|++|..+|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccCCCCCcEEEeeccccccCCcccceeeeeeeeeEEEEeCCC
Q 001852 909 KEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPY 988 (1004)
Q Consensus 909 ~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 988 (1004)
++.||+||++.++++ +|++||+.|++||||||+|||||+||||+||||+||||||+|||+++||||||++|||||||++
T Consensus 765 ~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 843 (857)
T PLN03077 765 KASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTE 843 (857)
T ss_pred HhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCC
Confidence 999999999998844 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCCCC
Q 001852 989 RFHHFYGGECSCLD 1002 (1004)
Q Consensus 989 r~h~f~~g~csc~~ 1002 (1004)
|||||+||+|||||
T Consensus 844 rfh~f~~g~csc~d 857 (857)
T PLN03077 844 QFHHFKDGECSCGD 857 (857)
T ss_pred cceeCCCCcccCCC
Confidence 99999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-130 Score=1179.67 Aligned_cols=612 Identities=35% Similarity=0.617 Sum_probs=605.3
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcC-CcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHH
Q 001852 392 ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQ-RLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNA 470 (1004)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 470 (1004)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhc
Q 001852 471 LVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIH 550 (1004)
Q Consensus 471 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 550 (1004)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||.+++.+|+.. +....
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-CcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred ccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC
Q 001852 551 GMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVY 630 (1004)
Q Consensus 551 ~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 630 (1004)
|+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHH
Q 001852 631 FDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFA 710 (1004)
Q Consensus 631 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 710 (1004)
||..||++++.+|++.|.+++|+++|..+.+.|+.||..++++|+++|+|+|++++|.++|++|.++|+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 711 RHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 711 ~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
++|+.++|+++|++|.+. +.||.+||++++++|++.|++++|.++|+.|.+++++.|+..||+|||++|+|+|+++||.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 999999999999999998 9999999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccC
Q 001852 790 TFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKK 869 (1004)
Q Consensus 790 ~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 869 (1004)
+++++||+.|+..+|++|+.+|+.+|+++.|+.+++++++++|++++.|+.|+|+|++.|+|++|.++++.|+++|++|.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccC
Q 001852 870 PACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINS 949 (1004)
Q Consensus 870 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~ 949 (1004)
|||||||+++++|.|++||++||+.++||.+|++|..+|++.||+||+++++||+++++|++.|++||||||+|||||+|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeeccccccCCcccceeeeeeeeeEEEEeCCCccccccCcccCCCCCC
Q 001852 950 PEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPYRFHHFYGGECSCLDYW 1004 (1004)
Q Consensus 950 ~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~r~h~f~~g~csc~~~w 1004 (1004)
|||+||||+||||||+|||+++||||+|+||||||||++|||||+||+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-97 Score=918.65 Aligned_cols=677 Identities=27% Similarity=0.455 Sum_probs=661.1
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhh
Q 001852 87 GDKNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGT 166 (1004)
Q Consensus 87 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 166 (1004)
+.++..++|.++.+|++.|++++|+.+|++|.+.|+.|+..+|..++++|.+.+.+. .+.++|..+.+.|..+++.++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVE-EGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHH-HHHHHHHHHHHcCCCCCchHHH
Confidence 356788899999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred hHHHHhhcCCChhhHHHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhh
Q 001852 167 SLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLL 246 (1004)
Q Consensus 167 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 246 (1004)
+|+.+|+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCC
Q 001852 247 GYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQE 326 (1004)
Q Consensus 247 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 326 (1004)
+.++|..+++.|+.||..++|+||.+|+++|++++|.++|++|+.||.++||+||.+|++.|++++|+++|++|...|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHH
Q 001852 327 INSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHV 406 (1004)
Q Consensus 327 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 406 (1004)
||..||+.+|.+|++.|+++.|.++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHH
Q 001852 407 QDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQ 486 (1004)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 486 (1004)
+.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCc
Q 001852 487 VFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESH 566 (1004)
Q Consensus 487 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~ 566 (1004)
+|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||.++|.+|++. +.++.|+++|..+++.|+.+|
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~-g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI-GALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh-chHHHhHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999986 6999999999999999999 999999999999999999999
Q ss_pred hhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhh
Q 001852 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 567 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 646 (1004)
..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 999999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001852 647 AVLEEGHQLHGLAT-KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV-DRPRLSWNILISVFARHGYFQKAIETFDE 724 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 724 (1004)
|.+++|.++++.|. +.|+.|+..+|++|+++|+++|++++|.+++++|+ +||..+|++|+.+|..+|+.+.|....++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999998 78999999999999999999999999999999996 79999999999999999999999999999
Q ss_pred HhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC
Q 001852 725 MLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI 769 (1004)
Q Consensus 725 m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 769 (1004)
+.+ +.| |...|..+.+.|...|++++|.++.+.|++. |+.+++
T Consensus 683 l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~ 726 (857)
T PLN03077 683 IFE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDP 726 (857)
T ss_pred HHh-hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCC
Confidence 888 466 5667888888999999999999999999985 877765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-68 Score=642.72 Aligned_cols=474 Identities=22% Similarity=0.396 Sum_probs=459.3
Q ss_pred CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcC-CCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHH
Q 001852 291 VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVG-QEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNT 369 (1004)
Q Consensus 291 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 369 (1004)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHH
Q 001852 370 LLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 370 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 449 (1004)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCC
Q 001852 450 KIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPM 529 (1004)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 529 (1004)
.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHH
Q 001852 530 NYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANA 609 (1004)
Q Consensus 530 ~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 609 (1004)
|..||++++.+|++. +.++.|+++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++|.++|+++||+||.+|+
T Consensus 324 d~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 324 DQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCCChhHHhHHHhhHHhcCChhhHh
Q 001852 610 LHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATK-LGFDLDPFVTNAAMDMYGKCGEIGDVL 688 (1004)
Q Consensus 610 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~ 688 (1004)
++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|..|.+ .|+.|+..+|++|+++|+++|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 699999999999999999999999999
Q ss_pred hhcCCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC
Q 001852 689 RIAPQPV-DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVP 766 (1004)
Q Consensus 689 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 766 (1004)
++|++|+ .|+..+|++|+.+|+.+|+.+.|..+++++.+ ..| +..+|+.+++.|++.|++++|.++++.|.+. |+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 9999997 58999999999999999999999999999977 466 5679999999999999999999999999875 664
Q ss_pred C
Q 001852 767 A 767 (1004)
Q Consensus 767 p 767 (1004)
+
T Consensus 561 k 561 (697)
T PLN03081 561 M 561 (697)
T ss_pred c
Confidence 3
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-67 Score=634.43 Aligned_cols=524 Identities=18% Similarity=0.205 Sum_probs=473.3
Q ss_pred cCCCcchhhHHHHHHHccCChhHHHHHhcccCCCChhh-----HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHH
Q 001852 56 VSFSVFYNNTLINMYFKFGCLGYARYVFDKMGDKNDAS-----WNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLIS 130 (1004)
Q Consensus 56 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 130 (1004)
-.++...|..+++.|+++|++++|+++|++|+.+++.. ++.++.+|.+.|.+++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 45678899999999999999999999999998776654 45667779999999999999999974 9999999
Q ss_pred HHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC----CCchhHHHHHHHHHHhC
Q 001852 131 SLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP----VRNVVSWTSLMVAYLDN 206 (1004)
Q Consensus 131 ~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 206 (1004)
.+|++|++.+++. .+.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||.++||+||.+|++.
T Consensus 442 ~LL~a~~k~g~~e-~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDID-GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999 999999999999999999999999999999999999999999998 68999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHH--hcCCCChhhhhHHHHHhhCCCCHHHHHH
Q 001852 207 GSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIK--FGFHYTVPVANSLISMFGNFGSVKEARC 284 (1004)
Q Consensus 207 g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~ 284 (1004)
|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6899999999999999999999999999
Q ss_pred HHhhCCC----CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Q 001852 285 IFDSMHV----RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLAL 360 (1004)
Q Consensus 285 ~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 360 (1004)
+|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999974 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHhcCC----CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHH
Q 001852 361 NSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS----ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSA 436 (1004)
Q Consensus 361 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 436 (1004)
.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 589999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----ccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCCh
Q 001852 437 LAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYA----KSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEP 512 (1004)
Q Consensus 437 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 512 (1004)
|.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. +++...++...|+.+...+...| .
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~ 828 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------T 828 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------H
Confidence 9999999999999999999999999999999999998743 33444334444443333333344 4
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhc
Q 001852 513 DKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEG 592 (1004)
Q Consensus 513 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 592 (1004)
++|+.+|++|++.|+.||..||..+|.++ ++.+..+.+..+++.
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl------------------------------------~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCL------------------------------------QLPHDATLRNRLIEN 872 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHh------------------------------------cccccHHHHHHHHHH
Confidence 56999999999999999999998877433 233556667777776
Q ss_pred CCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh
Q 001852 593 LAE----KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF 634 (1004)
Q Consensus 593 ~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 634 (1004)
|.. ++..+|++||.++.+. .++|+.+|++|...|+.|+..
T Consensus 873 m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 873 LGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 642 3677888888887432 468999999999999998865
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-65 Score=615.08 Aligned_cols=523 Identities=16% Similarity=0.223 Sum_probs=439.2
Q ss_pred CCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcc-----hHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHH
Q 001852 260 HYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTI-----SWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFST 334 (1004)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 334 (1004)
.++...|..++..+++.|++++|.++|++|+.++.+ .++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 455666777777777777777777777777765443 344556667777777777777777753 77778888
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCC----CCCcchHHHHHHHHHcCCC
Q 001852 335 LLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS----ERDSVSWNSLVASHVQDEK 410 (1004)
Q Consensus 335 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 410 (1004)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||++|+++|++++|.++|++|. .||.++|++||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 888887777888888888888777888888888888888888888888888888876 4678888888888888888
Q ss_pred HHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHccCChHHHHHHH
Q 001852 411 YIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVIT--MGLHDNLIVGNALVSMYAKSGMMSEAKQVF 488 (1004)
Q Consensus 411 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 488 (1004)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888876 578888888899999999999999999998
Q ss_pred hcCCC----CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhccc
Q 001852 489 RIMPK----RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFE 564 (1004)
Q Consensus 489 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~ 564 (1004)
+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++. +.++.+.+++..+.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~-G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA-GDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCC
Confidence 88873 567889999999999999999999999999999999999999999999888 8888899999999999999
Q ss_pred CchhHHhHHhhHHHHcCChhhHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH
Q 001852 565 SHKYVQNSLITMYAKCGDLNSSNYIFEGLA----EKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL 640 (1004)
Q Consensus 565 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 640 (1004)
|+..+|++||++|+++|++++|.++|++|. .+|.++||+||.+|++.|++++|+++|++|...|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999994 5799999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh----HHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHH
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM----YGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQ 716 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 716 (1004)
.+|++.|++++|.++|..|.+.|+.||..+|++|+++ |.++++..++...|+.+...+...|+ +
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------S 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------H
Confidence 9999999999999999999999999999999999987 45666666666666655555555665 4
Q ss_pred HHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 717 KAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 717 ~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+|+.+|++|++. +.||.+||..++.+++..+.++.+..+++.|... +..|+..+|+++++.+++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 599999999999 9999999999997777778888777777776543 5666778899999988432 46899999998
Q ss_pred ---CCCCCHH
Q 001852 796 ---PVTPNDL 802 (1004)
Q Consensus 796 ---~~~p~~~ 802 (1004)
.+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 4666653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-39 Score=409.86 Aligned_cols=806 Identities=12% Similarity=0.009 Sum_probs=642.3
Q ss_pred ccchhhhHHHHHHHhhccCCCcchhhHHHHHHHccCChhHHHHHhcccCC----CChhhHHHHHHHHHhcCChhhHHHHH
Q 001852 39 TNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGD----KNDASWNNTMSGLVRLGLYQESVGFF 114 (1004)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~ 114 (1004)
+....+...+......+.. +......+...|.+.|++++|...|.+... .....+..+...+.+.|++++|...|
T Consensus 70 g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 148 (899)
T TIGR02917 70 GDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY 148 (899)
T ss_pred CCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445566666666665553 334455677788888888888888877642 23456777778888899999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC---CC
Q 001852 115 NEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP---VR 191 (1004)
Q Consensus 115 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~ 191 (1004)
+++.+... .+...+..+...+...|+.. .+..++..+.+.. +.+...+..+...+...|++++|...|++.. ..
T Consensus 149 ~~a~~~~~-~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 149 EQALAIDP-RSLYAKLGLAQLALAENRFD-EARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred HHHHhcCC-CChhhHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 98876532 23445666677777788887 8888888877653 4466777888888889999999999998764 34
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHH
Q 001852 192 NVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLIS 271 (1004)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 271 (1004)
+...|..++..+...|++++|...++.+.+.... +..........+...|+++.|...+..+.+.+.. +...+..+..
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~ 303 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGA 303 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 5677888888889999999999999988875422 2223333333445778899999999888876532 2233444556
Q ss_pred HhhCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhH
Q 001852 272 MFGNFGSVKEARCIFDSMHV---RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWG 348 (1004)
Q Consensus 272 ~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 348 (1004)
.+...|++++|...|+.... .+...+..+...+...|++++|+..++.+.... +.+...+..+...+...|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 77888999999999988752 355667788888999999999999999987653 34567788888888899999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCC---CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcC
Q 001852 349 RGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSER---DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQ 425 (1004)
Q Consensus 349 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (1004)
.+++..+.+.. +.+...+..+...+...|+.++|.+.|+.+... +...+..++..+.+.|++++|.++++++...
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 99999988764 335667788888899999999999999877643 3456777888899999999999999998764
Q ss_pred CcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhh
Q 001852 426 RLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNAL 502 (1004)
Q Consensus 426 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~l 502 (1004)
.+++..++..+...+...|+.+.|.+.+..+.+.. +.+...+..+...+.+.|++++|.+.|+.+.. .+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34466778888888999999999999999988764 34566777888999999999999999998753 356788888
Q ss_pred hHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCC
Q 001852 503 IGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGD 582 (1004)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 582 (1004)
...+.+.|+.++|...|.++...+ +.+...+..+...+... +..+.+..++..+.+. .+.+...+..+...|.+.|+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK-GQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998753 23445556666777777 7888888888887654 34567788999999999999
Q ss_pred hhhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHH
Q 001852 583 LNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLA 659 (1004)
Q Consensus 583 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 659 (1004)
+++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|..++..+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 367789999999999999999999999998742 334667788888889999999999999998
Q ss_pred HHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHH
Q 001852 660 TKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFV 737 (1004)
Q Consensus 660 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~ 737 (1004)
.+.. +.+...+..+...|.+.|++++|.+.|+++.. |+..++..++..+...|+.++|.+.++++.+..+.+...+.
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8776 45677788899999999999999999998763 55577888999999999999999999999986555778888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG 815 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g 815 (1004)
.+...|...|++++|..+|+++.+. -+++...+..++.++.+.|+ ++|.+.++++ ...|+ +.+|..+...+...|
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 8999999999999999999999864 34466788899999999999 8899999886 44444 457888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+++.|...++++++++|.++.++..++.+|.+.|++++|.++.+.|.
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-38 Score=398.12 Aligned_cols=809 Identities=12% Similarity=0.020 Sum_probs=620.2
Q ss_pred ccchhhhHHHHHHHhhccCCCcchhhHHHHHHHccCChhHHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHH
Q 001852 39 TNESVGKALHALCIKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGD---KNDASWNNTMSGLVRLGLYQESVGFFN 115 (1004)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 115 (1004)
+....+...+...++... .+...+..+...|.+.|++++|...|++..+ ++...+..+...+.+.|++++|+..+.
T Consensus 36 ~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~ 114 (899)
T TIGR02917 36 NKYKAAIIQLKNALQKDP-NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP 114 (899)
T ss_pred CChHhHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhc
Confidence 344445555555444322 2445667788888888888888888877632 234455666778888888888888887
Q ss_pred HHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC---CCc
Q 001852 116 EMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP---VRN 192 (1004)
Q Consensus 116 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~ 192 (1004)
+........+...+..+-..+...|+.. .+...+..+.+... .+...+..+...+...|++++|.++++++. .++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (899)
T TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLE-LAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGN 192 (899)
T ss_pred ccccCCchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6543222333344555556666677777 78888887776543 345667778888888888888888888764 235
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHH
Q 001852 193 VVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISM 272 (1004)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 272 (1004)
...|..+...+...|++++|.+.|++..+.. +.+..++..+...+...|+++.|...++.+.+.... +..........
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 270 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALV 270 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHH
Confidence 5677777788888888888888888887653 345667777777788888888888888888776533 23333334445
Q ss_pred hhCCCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHH
Q 001852 273 FGNFGSVKEARCIFDSMHVR---DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGR 349 (1004)
Q Consensus 273 ~~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 349 (1004)
+...|++++|...|+++... +...+..+...+...|++++|...|++..... +.+...+..+...+...|+++.|.
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHH
Confidence 56778888888888876533 22334445566778888889988888887653 234556666777778888999998
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR 426 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (1004)
+.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|.+.|+++.....
T Consensus 350 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 350 ATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 8888887664 34567788888888899999999999887754 2456777888888888999999999988876543
Q ss_pred cCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhhh
Q 001852 427 LVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNALI 503 (1004)
Q Consensus 427 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 503 (1004)
.+ ......++..+...|+.+.+..++..+.+. .+.+..++..+...|...|++++|.+.|+++.+ .+...+..+.
T Consensus 429 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 506 (899)
T TIGR02917 429 EL-GRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506 (899)
T ss_pred cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 22 233445666778889999999998888764 355677888899999999999999999988652 3455677788
Q ss_pred HHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCCh
Q 001852 504 GGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDL 583 (1004)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 583 (1004)
..+...|++++|.+.|+++...+ +.+..++..+...+... +..+.+...+..+.+.+ +.+...+..++..|.+.|++
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRT-GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 88899999999999999998753 23445555666666666 77788888887776654 34556777899999999999
Q ss_pred hhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001852 584 NSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLAT 660 (1004)
Q Consensus 584 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 660 (1004)
++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...|+.++|..++..+.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998754 367889999999999999999999999998753 2345567777778889999999999999888
Q ss_pred HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHH
Q 001852 661 KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFV 737 (1004)
Q Consensus 661 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~ 737 (1004)
+.. +.+...+..++..|.+.|++++|.++++.+.. .+...|..+...+...|++++|++.|+++... .|+..++.
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 740 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSSQNAI 740 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCchHHH
Confidence 754 34577889999999999999999999998864 35667888999999999999999999999984 67667888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVT-PNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~-p~~~~~~~ll~~~~~~g 815 (1004)
.+..++.+.|++++|.+.++.+.+. .+.+...+..++++|.+.|++++|.+.++++ ... +++.++..+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999874 3445678888999999999999999999987 333 45678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCC
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNK 865 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 865 (1004)
+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+.+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9 889999999999999999999999999999999999999988877643
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.4e-39 Score=285.45 Aligned_cols=106 Identities=61% Similarity=1.023 Sum_probs=99.3
Q ss_pred cccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhh--------hhhhhhhHHHHHH
Q 001852 871 ACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQK--------EHNLWNHSERLAL 942 (1004)
Q Consensus 871 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 942 (1004)
||||+++ |.|++||++||+. .+..++...||.|+++.+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999988 9999999999999 555677788999999999999888766 6799999999999
Q ss_pred HHhhccCCCCCcEEEeecc-ccccCCcccceeeeeeeeeEEEEeCCCcccccc
Q 001852 943 AFGLINSPEGSTIRIFKNL-RVCSDCHSVYKFISKIVRRRIILRDPYRFHHFY 994 (1004)
Q Consensus 943 ~~~~~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~r~h~f~ 994 (1004)
|||||++ ||+||+ |||+|||+++|+||+++||||||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.7e-22 Score=256.39 Aligned_cols=425 Identities=12% Similarity=0.030 Sum_probs=279.2
Q ss_pred HHHHHhcCChhhHHHHHhcCCC--C-CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCH-hhHHHHHHhhcCCCCh
Q 001852 371 LAMYSEAGRSEDAKFVFQEMSE--R-DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNY-VTFTSALAACSDPGFV 446 (1004)
Q Consensus 371 i~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~ 446 (1004)
-..+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+....... ..+..++..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~------- 348 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV------- 348 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh-------
Confidence 3445556666666666666543 2 4555666666666666666666666666543211100 011111100
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--C-CeechhhhhHHhhhCCChhHHHHHHHHHH
Q 001852 447 VQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--R-DTVTWNALIGGHSEKEEPDKALKAYKRMR 523 (1004)
Q Consensus 447 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (1004)
........+...+.+.|++++|...|++... | +...+..+...|...|++++|++.|++..
T Consensus 349 ----------------~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 349 ----------------NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred ----------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000111234456677778888777777652 2 34456666777777888888888887777
Q ss_pred hcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCC------
Q 001852 524 EEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKN------ 597 (1004)
Q Consensus 524 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------ 597 (1004)
+. .|+... .+..+...|. .++.++|...++.++...
T Consensus 413 ~~--~p~~~~-----------------------------------a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 413 RM--DPGNTN-----------------------------------AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred Hh--CCCCHH-----------------------------------HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 63 233211 1122333332 245566666665554321
Q ss_pred ------HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhH
Q 001852 598 ------SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFV 670 (1004)
Q Consensus 598 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 670 (1004)
...+..+...+...|++++|++.|++..+. .|+. ..+..+...+...|+.++|...++.+++... .++..
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHH
Confidence 123455666777788888888888887763 5543 3445555677778888888888887776432 24445
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCCC----Chh---------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHH
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVDR----PRL---------SWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFV 737 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~ 737 (1004)
+..+.-.+.+.|+.++|...+++++.. +.. .+..+...+...|+.++|+++++. .+++...+.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p~~~~~~~ 607 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----CCCCchHHH
Confidence 555566677888888888888877632 111 123456778889999999998872 345666777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhc
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMP-VTPN-DLVWRSLLASSKIH 814 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~-~~~~~~ll~~~~~~ 814 (1004)
.+...+...|++++|+..|+...+. .| +...+..++.+|...|++++|++.++..+ ..|+ ..++..+..++...
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 8889999999999999999999863 44 45778889999999999999999998873 5555 45778888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC------CeehhhhHhhhcCCchHHHHH-HHHHhhCCC
Q 001852 815 GNVELAKKAAEHLFELDPSDDS------SYVLYSNVCAATGRWDDVENV-RRQMGWNKI 866 (1004)
Q Consensus 815 g~~e~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~-~~~m~~~~~ 866 (1004)
|+.+.|...++++++..|+++. .+..++.+|...|++++|... ++.|...|+
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 9999999999999998877664 455678999999999999987 445554444
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.6e-21 Score=247.56 Aligned_cols=661 Identities=10% Similarity=0.041 Sum_probs=419.8
Q ss_pred HHHHHHHccCChhHHHHHhcccC--C-CChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccCc
Q 001852 65 TLINMYFKFGCLGYARYVFDKMG--D-KNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGF 141 (1004)
Q Consensus 65 ~li~~~~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 141 (1004)
..++.+-..++.+.|++.+++.. . .|...+..++..+.+.|+.++|...+++..+. .|+...+..+.....
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~---- 106 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTML---- 106 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH----
Confidence 45666778899999999998853 3 36777888999999999999999999999874 455443221111110
Q ss_pred chhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCCC--CchhHHHH-HHH-HHHhCCCchHHHHHHH
Q 001852 142 MVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPV--RNVVSWTS-LMV-AYLDNGSPIEVVDLYR 217 (1004)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~-~~~~~g~~~~a~~l~~ 217 (1004)
. ..|+....-.+...+.+.|++++|.+.|++... |+...... ... .....|+.++|++.|+
T Consensus 107 --------------~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~ 171 (1157)
T PRK11447 107 --------------L-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQ 171 (1157)
T ss_pred --------------h-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHH
Confidence 0 112333334455677888999999999988653 22221111 111 1223588889999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhC---C-C-C
Q 001852 218 YMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSM---H-V-R 292 (1004)
Q Consensus 218 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~-~-~ 292 (1004)
++.+.. +-+......+-..+...|+.++|...++.+.+.... ....+...++.+ . . .
T Consensus 172 ~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-----------------~~~aa~~~~~~l~~~~~~~~ 233 (1157)
T PRK11447 172 RLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-----------------RDAAAQLWYGQIKDMPVSDA 233 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-----------------hHHHHHHHHHHHhccCCChh
Confidence 888753 234455666677777788888888888777653210 001111111111 1 0 1
Q ss_pred CcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHH
Q 001852 293 DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLA 372 (1004)
Q Consensus 293 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 372 (1004)
....+...+..+-.......|...+.++......|+... ...-.++...|++++|...+...++.. +.+...+..|..
T Consensus 234 ~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~ 311 (1157)
T PRK11447 234 SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQ 311 (1157)
T ss_pred hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 122233333333333344556666666544433333222 122334556788888888888888764 235677778888
Q ss_pred HHHhcCChhhHHHHHhcCCC--CCc---chHHHH------------HHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHH
Q 001852 373 MYSEAGRSEDAKFVFQEMSE--RDS---VSWNSL------------VASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTS 435 (1004)
Q Consensus 373 ~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 435 (1004)
.|.+.|+.++|+..|++..+ |+. ..|..+ ...+.+.|++++|...|++...... .+...+..
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~ 390 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLG 390 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 88888888888888887654 221 123222 2345677888888888888776521 23334445
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCC------------eechhhhh
Q 001852 436 ALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRD------------TVTWNALI 503 (1004)
Q Consensus 436 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------------~~~~~~li 503 (1004)
+-..+...|++++|.+.+..+++.. +.+...+..+...|. .++.++|..+++.++... ...+..+.
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5566667777777777777777653 223445555666554 346677777776655221 11233445
Q ss_pred HHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCCh
Q 001852 504 GGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDL 583 (1004)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 583 (1004)
..+...|++++|++.|++.++. .|+ +..++..+...|.+.|++
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~--~P~-----------------------------------~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLAL--DPG-----------------------------------SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------------------CHHHHHHHHHHHHHcCCH
Confidence 5566677777777777776653 232 222334566667777777
Q ss_pred hhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001852 584 NSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLAT 660 (1004)
Q Consensus 584 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 660 (1004)
++|...|+++.+ .+...+..+...+.+.|+.++|+..++++......++...+.. .+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l- 571 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RL- 571 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HH-
Confidence 777777776532 2444555555556667777777777776543211111100000 00
Q ss_pred HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHH
Q 001852 661 KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSL 739 (1004)
Q Consensus 661 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~l 739 (1004)
.......+.+.|...|+.++|.++++.- ..+...+..+...+.+.|+.++|++.|++.++. .| +...+..+
T Consensus 572 ------~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~l 643 (1157)
T PRK11447 572 ------QSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGL 643 (1157)
T ss_pred ------hhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 0011234567788899999999999843 235567788899999999999999999999985 55 67789999
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCC---C----CHHHHHHHHHH
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVT---P----NDLVWRSLLAS 810 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~---p----~~~~~~~ll~~ 810 (1004)
..++...|+.++|++.++...+ ..|+ ...+..+..++.+.|++++|.++++++ +.. | +..++..+...
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 9999999999999999998764 3443 456677888999999999999999886 222 2 23467777888
Q ss_pred HHhcCCHHHHHHHHHHHHh---cCCCCCCC
Q 001852 811 SKIHGNVELAKKAAEHLFE---LDPSDDSS 837 (1004)
Q Consensus 811 ~~~~g~~e~a~~~~~~~~~---l~p~~~~~ 837 (1004)
+...|+.+.|+..+++++. +.|..+..
T Consensus 721 ~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999986 55666664
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.7e-20 Score=226.57 Aligned_cols=619 Identities=10% Similarity=0.012 Sum_probs=360.4
Q ss_pred cCCChhhHHHhhccCC--CC-chhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHH
Q 001852 174 TYGHINKARRVFEEMP--VR-NVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLF 250 (1004)
Q Consensus 174 ~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 250 (1004)
..|++++|...|++.. .| +...+..+...|.+.|++++|+..+++..+. .|+...|..++... ++...|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 3477777777777654 23 3456677777777777777777777777664 34444444433222 555566666
Q ss_pred HHHHHHhcCCCChhhhhHHHHH--------hhCCCCHHHHHHHHhhCCCCC--cchHHHH-HHHHHhCCCchhHHHHHHH
Q 001852 251 LGHVIKFGFHYTVPVANSLISM--------FGNFGSVKEARCIFDSMHVRD--TISWNSM-ISVYSHSGLCDQSLKCFHW 319 (1004)
Q Consensus 251 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~d--~~~~~~l-i~~~~~~g~~~~A~~l~~~ 319 (1004)
++.+.+.... +..++..+... |.+.+...++++ .+...|+ ....... ...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 6666555422 22223333332 444444444444 2222222 2222222 4555555555555555555
Q ss_pred HHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCChhhHHHHHhcCCCCCcchH
Q 001852 320 MRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSE-AGRSEDAKFVFQEMSERDSVSW 398 (1004)
Q Consensus 320 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~ 398 (1004)
+.+.+.. +..-...|-..|.. .++ +.+..+++...+.|...+
T Consensus 208 L~k~~pl------------------------------------~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~ 250 (987)
T PRK09782 208 ARQQNTL------------------------------------SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSR 250 (987)
T ss_pred HHhcCCC------------------------------------CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHH
Confidence 5554322 12223333334444 233 455555443333455555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhcCCc-CCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Q 001852 399 NSLVASHVQDEKYIDALKIFSNMLQKQRL-VNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDN-LIVGNALVSMYA 476 (1004)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~ 476 (1004)
..+...|.+.|+.++|.++++++...-.. |+..++.-++.-...... .+..-+.. .+.++ ....-.++..+.
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPV--QALANYTV----QFADNRQYVVGATLPVLL 324 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchh--hhccchhh----hhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555433222 344333333322222110 00000000 00000 112223355556
Q ss_pred ccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCC-CC---ChhhHHHHHHhhcCCcchhhccc
Q 001852 477 KSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGT-PM---NYITFANVLGACLNPGDLLIHGM 552 (1004)
Q Consensus 477 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p---~~~t~~~ll~a~~~~~~~~~~~~ 552 (1004)
+.++++.|.++.+.-+ .+. ..-.-..+....+...++...++.|.+... .+ +..||..+-. +..+++.
T Consensus 325 ~~~~~~~~~~~~~~~~-~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~------~~~~~a~ 396 (987)
T PRK09782 325 KEGQYDAAQKLLATLP-ANE-MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQN------GQSREAA 396 (987)
T ss_pred hccHHHHHHHHhcCCC-cch-HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------ccHHHHH
Confidence 6666665555533111 111 110001111222444455555555544310 11 1112221111 2333344
Q ss_pred chhhhhhhh-c-ccCchhHHhHHhhHHHHcCChhh---H-------------------------HHHHhcCCC---C--C
Q 001852 553 PIHTHIVLT-G-FESHKYVQNSLITMYAKCGDLNS---S-------------------------NYIFEGLAE---K--N 597 (1004)
Q Consensus 553 ~i~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~~~~---A-------------------------~~~f~~~~~---~--~ 597 (1004)
+++...... + -..+..+.+-|+..|.+.+.+.. + ...+..... . +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 443333321 0 01123334445555555544221 1 112222211 2 5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 598 SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 598 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
...|..+...+.. ++.++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 6678888888877 8999999988887764 577655444445556899999999999887554 3444556677888
Q ss_pred HHhcCChhhHhhhcCCCCCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVDRPRLSWNIL---ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
+.+.|+.++|...+++....++..++.. .......|++++|+..|++.++ ..|+...+..+..++.+.|++++|+.
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988775444333333 3333455999999999999998 57888899999999999999999999
Q ss_pred HHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 755 YYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
.|++... +.|+ ...+..+..+|...|++++|.+.+++. ...|+ +.+|..|..++...|+++.|+..++++++++
T Consensus 631 ~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 631 DLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999975 3554 477888999999999999999999886 56665 5589999999999999999999999999999
Q ss_pred CCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 832 PSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 832 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
|+++.+....+++.....+++.+.+-.+.
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875544
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=2.4e-19 Score=216.66 Aligned_cols=675 Identities=10% Similarity=-0.005 Sum_probs=405.9
Q ss_pred HccCChhHHHHHhcccC--CC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccCcchhhHH
Q 001852 71 FKFGCLGYARYVFDKMG--DK-NDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGI 147 (1004)
Q Consensus 71 ~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 147 (1004)
...|++++|...|+... .| +...+..+...|.+.|++++|+..+++..+. .|+...|..++... +... .+.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~-kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEV-KSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccCh-hHH
Confidence 34589999999988753 23 4667888889999999999999998888764 45544444444222 3333 444
Q ss_pred HHHHHHhhcCCCCCcchhhhHHHH--------hhcCCChhhHHHhhccCC-CCchh-HHHHHHHHHHhCCCchHHHHHHH
Q 001852 148 QVHGFSVKVGLLCDVFVGTSLLHF--------YGTYGHINKARRVFEEMP-VRNVV-SWTSLMVAYLDNGSPIEVVDLYR 217 (1004)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~-~~~~~-~~~~li~~~~~~g~~~~a~~l~~ 217 (1004)
.+++.+.+.... +..++..+... |.+.+....|++ ..... .|+.. ..-.+...|.+.|++++|++++.
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 555555544321 22233333332 555444444444 21111 11222 22222555555566666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhC-CCCHHHHHHHHhhCCCCCcch
Q 001852 218 YMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGN-FGSVKEARCIFDSMHVRDTIS 296 (1004)
Q Consensus 218 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~d~~~ 296 (1004)
++.+.+. .+......|-.+|.. .++ +.+..+++...+.|...
T Consensus 207 ~L~k~~p------------------------------------l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l 249 (987)
T PRK09782 207 EARQQNT------------------------------------LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQS 249 (987)
T ss_pred HHHhcCC------------------------------------CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHH
Confidence 6555432 112223333334444 244 66666655433446666
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHcCCC-CChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCc-hHHHHHHHHHH
Q 001852 297 WNSMISVYSHSGLCDQSLKCFHWMRHVGQE-INSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSN-VWVCNTLLAMY 374 (1004)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y 374 (1004)
+..+...|.+.|+.++|.++++++...-.. |...++.-++.-..... ..+..-+. + .+.++ ....-.++..+
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~---~-~~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYT---V-QFADNRQYVVGATLPVL 323 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--hhhccchh---h-hhHHHHHHHHHHHHHHH
Confidence 777777777777777777777776543322 44444444433322221 00110000 0 01111 12233457788
Q ss_pred HhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC-cC---CHhhHHHHHHhhcCCCChHHHH
Q 001852 375 SEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR-LV---NYVTFTSALAACSDPGFVVQGK 450 (1004)
Q Consensus 375 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p---~~~t~~~ll~a~~~~~~~~~a~ 450 (1004)
.+.++++.+.++.+ ....+. ..-.-..+....+...++....+.|.+... .+ +..||. ....|+.++|.
T Consensus 324 ~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~-----~~~~~~~~~a~ 396 (987)
T PRK09782 324 LKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ-----LMQNGQSREAA 396 (987)
T ss_pred HhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH-----HHHcccHHHHH
Confidence 88888887777744 222222 111111222234566666666666665411 11 112222 23445666666
Q ss_pred HHHHHHHHh-C-CCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCC
Q 001852 451 IIHALVITM-G-LHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTP 528 (1004)
Q Consensus 451 ~~~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 528 (1004)
+++...... + -..+....+-|+..|.+.+.+....++..-.+..+...- +.-.|+..++.........
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---- 466 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVR---- 466 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHH----
Confidence 666655542 1 122444555666666666664444333322221111100 1111222221111111111
Q ss_pred CChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccC--chhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHH
Q 001852 529 MNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFES--HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIA 606 (1004)
Q Consensus 529 p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~ 606 (1004)
+... -++ +...+..+..++.. |+.++|...|.+.....+..|+.+..
T Consensus 467 -----------al~~-------------------~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 467 -----------LLGD-------------------MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred -----------hccc-------------------CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 0000 012 34556666666766 78888998777665443345555544
Q ss_pred HH--HhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCCh
Q 001852 607 AN--ALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEI 684 (1004)
Q Consensus 607 ~~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 684 (1004)
++ .+.|++++|+..|+++... .|+...+..+..++...|+.++|...+...++... .+...+..+.....+.|++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCH
Confidence 44 5899999999999987653 45555566666677889999999999998887652 2333333344444456999
Q ss_pred hhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 001852 685 GDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 685 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
++|...+++... |+...|..+...+.+.|+.++|++.|++.++. .| +...+..+..++...|+.++|+..|++..+
T Consensus 593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998774 67788999999999999999999999999995 66 566778888899999999999999999976
Q ss_pred hcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCe
Q 001852 762 EFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSY 838 (1004)
Q Consensus 762 ~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~ 838 (1004)
+.| +...+..+..++.+.|++++|+..+++. ...|+. .+............+++.+.+.+++...++|+.. +.
T Consensus 672 ---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~ 747 (987)
T PRK09782 672 ---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IG 747 (987)
T ss_pred ---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hc
Confidence 345 3477788999999999999999999887 777875 4666667777788899999999999999999888 78
Q ss_pred ehhhhHhhhcCCch
Q 001852 839 VLYSNVCAATGRWD 852 (1004)
Q Consensus 839 ~~l~~~y~~~g~~~ 852 (1004)
...+.++...+++-
T Consensus 748 ~~~g~~~~~~~~~~ 761 (987)
T PRK09782 748 LRSGAMSTANNNVG 761 (987)
T ss_pred cccchHhhhccccc
Confidence 88888887777653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=2.6e-18 Score=182.59 Aligned_cols=444 Identities=12% Similarity=0.086 Sum_probs=343.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHH-hhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001852 398 WNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALA-ACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYA 476 (1004)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 476 (1004)
-..+..-..+.|++++|++.-...-++. |+..--..++. .+.+..+.+...+.-...++. .+.-..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 3445556667788888887655443332 21111111222 233333333333322222222 2334667888999999
Q ss_pred ccCChHHHHHHHhcCCC--C-CeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccc
Q 001852 477 KSGMMSEAKQVFRIMPK--R-DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMP 553 (1004)
Q Consensus 477 ~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 553 (1004)
..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-+.-+.+..+.+.++..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998764 3 467888899999999999999999988877 678777665554444444355666666
Q ss_pred hhhhhhhhcccC-chhHHhHHhhHHHHcCChhhHHHHHhcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 001852 554 IHTHIVLTGFES-HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKN---SVTWNAMIAANALHGQGEEVLKLLVKMRHTGV 629 (1004)
Q Consensus 554 i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 629 (1004)
.+-.+++. .| -..+|+.|...+-..|++..|..-|++..+-| ..+|-.|...|...+.+++|+..|.+... .
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--L 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--c
Confidence 55555543 23 23567888899999999999999999887654 56888899999999999999999988876 4
Q ss_pred CCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--C-ChhHHHHH
Q 001852 630 YFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--R-PRLSWNIL 705 (1004)
Q Consensus 630 ~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~l 705 (1004)
.|+. +.+..+-..|.+.|.++.|..-+...+..... -+..|+-|..++-..|++.+|...+.+... + -..+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 6654 45666666778899999999999888775422 356789999999999999999999998764 3 35688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcC
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSG 783 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g 783 (1004)
...|...|+.++|..+|.+.++ +.| =...++.|.+.|-..|++++|+..++... .|.|+. +.|+.|...|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~-v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE-VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh-hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999998 567 45689999999999999999999999886 688986 88999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 784 RLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 784 ~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
+.++|.+.+.+. .+.|.- .....|...++..||+++|+..++.+++++|+.+.+|..|.....-...|.+-.
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 999999999887 678874 488999999999999999999999999999999999999988887788888843
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.79 E-value=4.4e-16 Score=172.66 Aligned_cols=696 Identities=12% Similarity=0.023 Sum_probs=402.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCCCC
Q 001852 112 GFFNEMLSFGVRPTGVLISSLLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVR 191 (1004)
Q Consensus 112 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 191 (1004)
.++..|...|+.|+.+||.+++..|+..|+.+ .+. ++..|.-..+.....+++.++.+....++.+.+. +|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdie-aat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIE-AAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCc-ccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 56778889999999999999999999999987 555 9999999999899999999999999999988776 68
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHH-H-------HHcCCCCChhhHHHHHHHhcccCChhh--------hHHHHHHHH
Q 001852 192 NVVSWTSLMVAYLDNGSPIEVVDLYRY-M-------RREGVCCNENTFAAVITSCGLTENDLL--------GYLFLGHVI 255 (1004)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~a~~l~~~-m-------~~~g~~p~~~t~~~ll~~~~~~~~~~~--------a~~~~~~~~ 255 (1004)
...+|+.+..+|.+.|+... ++..++ | ...|+.-...-|-..++.|...- .+. -+.+++..+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~l-pda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSL-PDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccc-hhHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998754 222222 2 12243333333333333332211 111 122334444
Q ss_pred HhcCCCChhhhhHH----HHHhhC-CCCHHHHHHHHhhCC-CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCh
Q 001852 256 KFGFHYTVPVANSL----ISMFGN-FGSVKEARCIFDSMH-VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINS 329 (1004)
Q Consensus 256 ~~g~~~~~~~~~~l----i~~~~~-~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 329 (1004)
+.+....+..++.= +.-... ...+++-........ .++..+|.+.+..-..+|+.+.|..++.+|.+.|.+.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 44421111111111 111111 122333333333333 379999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCC
Q 001852 330 TTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDE 409 (1004)
Q Consensus 330 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 409 (1004)
+-|..+|-+ .++......+..-|...|+.|+..|+.-.+-...+.|....+....+.-.--....+..+..+...+.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 999999876 78888999999999999999999999887777776555333222211100001122222222211111
Q ss_pred CH-----HHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHccCCh
Q 001852 410 KY-----IDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLH---DNLIVGNALVSMYAKSGMM 481 (1004)
Q Consensus 410 ~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~Li~~y~~~g~~ 481 (1004)
+. .-....+.+..-.|+.-....| ++..-....|.-+...++-+.+..--.. .++..+..+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~---------- 385 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL---------- 385 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH----------
Confidence 11 1111222222222333222222 2222222355555555555554322111 112222222
Q ss_pred HHHHHHHhcCCCCCee-chhhhhHHhhh---CCChhHHHHHHHHHHhcCCCCChh-----------------h-------
Q 001852 482 SEAKQVFRIMPKRDTV-TWNALIGGHSE---KEEPDKALKAYKRMREEGTPMNYI-----------------T------- 533 (1004)
Q Consensus 482 ~~A~~~f~~m~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~-----------------t------- 533 (1004)
+.+.|.+...+... .++ .-.+... .....+..++.... .||.. +
T Consensus 386 --lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 386 --LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred --HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 33444444433211 111 1111111 11112222222221 12111 0
Q ss_pred ----HHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC------CHhHHHH
Q 001852 534 ----FANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK------NSVTWNA 603 (1004)
Q Consensus 534 ----~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~ 603 (1004)
-..++-.|.+. .......+.-+.....- =...|..||+......+.+.|..+.+++..+ |..-+..
T Consensus 458 irdi~~ql~l~l~se-~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSE-YNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 11111122111 11111111111111111 1256789999999999999999999999877 4456888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCC--hhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhc
Q 001852 604 MIAANALHGQGEEVLKLLVKMRHTGVYFD--RFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKC 681 (1004)
Q Consensus 604 li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 681 (1004)
+.+.+.+.+....+..++.+|.+.-..-+ ..++--++...+..|..+.-+++++.+...|+..+ .-|+....+.
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrk 609 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRK 609 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeec
Confidence 89999999999999999999987533333 45666777888889999999999999988887653 3344556677
Q ss_pred CChhhHhhhcCCCCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHH
Q 001852 682 GEIGDVLRIAPQPVD------RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQY 755 (1004)
Q Consensus 682 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~ 755 (1004)
++...|+++++.... ++...|..++.- ....+.+++..+-.... .|.+.|.+.+|.++
T Consensus 610 dd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k-e~td~~qk~mDls~~iq---------------~f~k~g~~~~a~di 673 (1088)
T KOG4318|consen 610 DDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK-ETTDSPQKTMDLSIPIQ---------------KFEKLGSCVDAGDI 673 (1088)
T ss_pred cchhhhhhcchHHHHHhcCChHHHHHHHHHHHh-hccccHHHHHhhcchhH---------------HHHhcccccchhhc
Confidence 888888888876542 223333333220 01112222222211111 13334444443333
Q ss_pred HHHh-----------HhhcCCCC---------CCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001852 756 YNTM-----------TTEFGVPA---------GIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 756 ~~~m-----------~~~~~~~p---------~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g 815 (1004)
.+.= .....+.| ...+..-+...|.+.|+++.|..+..++++.|.......|+...+.+.
T Consensus 674 ~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n 753 (1088)
T KOG4318|consen 674 TETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMN 753 (1088)
T ss_pred cccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhc
Confidence 2210 00000111 012223366789999999999999999999999999999999988775
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCCCeehhhh--HhhhcCCchH-HHHHHHHHhhC
Q 001852 816 ---NVELAKKAAEHLFELDPSDDSSYVLYSN--VCAATGRWDD-VENVRRQMGWN 864 (1004)
Q Consensus 816 ---~~e~a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~~-a~~~~~~m~~~ 864 (1004)
|+.++...-+++-++.|..+..--..-. ..+.+++..+ |.+.....++.
T Consensus 754 ~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 754 EEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred hhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHc
Confidence 7788888889999887766553222222 3445566554 44566655554
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=8e-18 Score=190.78 Aligned_cols=300 Identities=13% Similarity=0.061 Sum_probs=243.6
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC---hhhHHHHHHHHhhhh
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFD---RFSLSEGLAAAAKLA 647 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~ 647 (1004)
...+...|++++|...|+++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567789999999999988654 456888999999999999999999999987543322 235667777888899
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC--------hhHHHHHHHHHHhcCCHHHHH
Q 001852 648 VLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP--------RLSWNILISVFARHGYFQKAI 719 (1004)
Q Consensus 648 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 719 (1004)
+++.|..++..+.+.. +.+...++.++.+|.+.|++++|.+.|+.+.+.+ ...|..++..+...|+.++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999988753 3467788999999999999999999998876422 124567788889999999999
Q ss_pred HHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--CchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 720 ETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG--IEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 720 ~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
+.|+++.+. .| +..++..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++
T Consensus 201 ~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 201 ALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999985 45 4567888889999999999999999999864 343 356788999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhh--cCCchHHHHHHHHHhhCCCccCCccc
Q 001852 796 PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAA--TGRWDDVENVRRQMGWNKIKKKPACS 873 (1004)
Q Consensus 796 ~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g~s 873 (1004)
...|+...+..+...+...|+.+.|...++++++..|+++....++...+.. .|+.+++..+.+.|.+++++..|.+.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 5678877778888899999999999999999999999987654444433322 56999999999999999999999855
Q ss_pred EEEeC
Q 001852 874 WVKSK 878 (1004)
Q Consensus 874 ~i~~~ 878 (1004)
....+
T Consensus 357 c~~cg 361 (389)
T PRK11788 357 CRNCG 361 (389)
T ss_pred CCCCC
Confidence 43333
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=4.1e-17 Score=173.60 Aligned_cols=410 Identities=11% Similarity=0.091 Sum_probs=309.1
Q ss_pred hcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCC---CeechhhhhHHhhhCCChhHHH
Q 001852 440 CSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKR---DTVTWNALIGGHSEKEEPDKAL 516 (1004)
Q Consensus 440 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~ 516 (1004)
..+.|++++|++.-...-... +.+....-.+-..+....+++....--....+. -..+|..+...+-..|+.++|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence 345677777766443332221 122222222334455555555543322222222 3457888999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCch-hHHhHHhhHHHHcCChhhHHHHHhcCCC
Q 001852 517 KAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHK-YVQNSLITMYAKCGDLNSSNYIFEGLAE 595 (1004)
Q Consensus 517 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 595 (1004)
.+++.|.+ .+|+.+--.+-+.+|....++.+.+.+.+...++. .|+. .+.+-+.......|++++|...+.+..+
T Consensus 137 ~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 99999998 56765544344444444448888888887777654 3433 2334456666778999999999887654
Q ss_pred C---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC-ChhH
Q 001852 596 K---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDL-DPFV 670 (1004)
Q Consensus 596 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~ 670 (1004)
. -.+.|+.|...+-..|+..+|++-|++... +.|+- ..|..+=..+...+.++.|...+..... ..| ...+
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a 288 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVA 288 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhh
Confidence 3 467999999999999999999999999876 56653 2344444455555555666555544433 333 4566
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhcc
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHG 746 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~ 746 (1004)
+.-|.-.|-..|.++-|+..+++..+ |+ ..+||.|..++-..|++.+|+..+.+.+.. .| .....+.|..++...
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQ 367 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHh
Confidence 77788889999999999999999875 44 478999999999999999999999999984 55 445788999999999
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 001852 747 GLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKA 823 (1004)
Q Consensus 747 g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~ 823 (1004)
|.+++|..+|.... .+.|.. ...+.|..+|-..|++++|..-+++. .++|... .+..+...+...|++..|.+.
T Consensus 368 ~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 368 GKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred ccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 99999999999886 456654 67788999999999999999999887 7899854 899999999999999999999
Q ss_pred HHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 824 AEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 824 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+++++..+|.-+.++..|+.+|-.+|+..+|..-++...
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999766543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=6.2e-17 Score=183.49 Aligned_cols=302 Identities=13% Similarity=0.093 Sum_probs=188.0
Q ss_pred HcCCCHHHHHHHHHHhhhcCCcCC-HhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHccCCh
Q 001852 406 VQDEKYIDALKIFSNMLQKQRLVN-YVTFTSALAACSDPGFVVQGKIIHALVITMGLHD---NLIVGNALVSMYAKSGMM 481 (1004)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~ 481 (1004)
...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..++..+++.+..+ ...++..+...|.+.|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444444444444444442 122 2233444444444445555555444444432111 124577888899999999
Q ss_pred HHHHHHHhcCCC---CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhh
Q 001852 482 SEAKQVFRIMPK---RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHI 558 (1004)
Q Consensus 482 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~ 558 (1004)
++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..++....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 999999998864 45678889999999999999999999999875432211100
Q ss_pred hhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhh
Q 001852 559 VLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFS 635 (1004)
Q Consensus 559 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 635 (1004)
...+..+...|.+.|++++|...|+++.+. +..++..+...|.+.|++++|+++|+++...+..+...+
T Consensus 180 --------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 180 --------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 112345677788889999999999887542 466788888899999999999999999886532222344
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHh--
Q 001852 636 LSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFAR-- 711 (1004)
Q Consensus 636 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~-- 711 (1004)
+..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++.. |+...++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 5566666667777777777666665543 3334445566666666666666666655442 455555555554442
Q ss_pred -cCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCH
Q 001852 712 -HGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLV 749 (1004)
Q Consensus 712 -~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~ 749 (1004)
+|+.++|+.+|++|.+. ++|+.. .+|++.|.+
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 44566666666666654 444433 335555544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.3e-15 Score=181.89 Aligned_cols=214 Identities=12% Similarity=0.076 Sum_probs=143.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 645 KLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 645 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
..|++++|...+..+++.. +.....+..+...|...|++++|...|++... .+...|..+...|...|++++|+..
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444444443322 11233455566666667777777776665542 3456777777888888888888888
Q ss_pred HHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 001852 722 FDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTP 799 (1004)
Q Consensus 722 ~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p 799 (1004)
|++.++. .| +...+..+..++...|++++|+..|++..+.+ +.+...|..++.+|...|++++|.+.+++. .+.|
T Consensus 422 ~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 422 YQKSIDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 8888774 44 55666677777888888888888888876532 223466777788888888888888887774 3444
Q ss_pred CH-------HHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 800 ND-------LVW-RSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 800 ~~-------~~~-~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+. ..| +..+..+...|+++.|+..++++++++|++...+..|+.+|...|++++|.+..+...
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 31 111 1222223335888888888888888888888888888888888888888888766544
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.3e-13 Score=150.78 Aligned_cols=553 Identities=12% Similarity=0.039 Sum_probs=341.1
Q ss_pred HHHHHHHHhhCCCC--CcchHHHHHHHH--HhCCCchhHHHHHHHHHHc--CCCCChhhHHHHHHhhcCCCChhhHHHHH
Q 001852 279 VKEARCIFDSMHVR--DTISWNSMISVY--SHSGLCDQSLKCFHWMRHV--GQEINSTTFSTLLSACGSVDNLKWGRGIH 352 (1004)
Q Consensus 279 ~~~A~~~f~~m~~~--d~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 352 (1004)
++.|...|...... +.+ .-.+..++ ...+++..|+.+|...... ..+||...- +-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 46666666665432 211 11222222 2356677777777775433 233443221 113344667777777777
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcC---ChhhHHHHHhcCC---CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC
Q 001852 353 GLAVKLALNSNVWVCNTLLAMYSEAG---RSEDAKFVFQEMS---ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR 426 (1004)
Q Consensus 353 ~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (1004)
..+++... .++..+-.|--+-.... .+..+..++...- ..|++..+.|-.-|.-.|++..++.+...+.....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 76666532 11112111111111111 2333444443332 24677777777777777888777777777665431
Q ss_pred c--CCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--C-Ceechhh
Q 001852 427 L--VNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--R-DTVTWNA 501 (1004)
Q Consensus 427 ~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~ 501 (1004)
. .-...|-.+-+++-..|+++.|...+-...+..-......+--|..+|.+.|+++.|...|+.+.+ | +..+-..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 112235556667777788888877777666553222233344577888888888888888887753 2 3334444
Q ss_pred hhHHhhhCC----ChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchh----hhhhhhcccCchhHHhHH
Q 001852 502 LIGGHSEKE----EPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIH----THIVLTGFESHKYVQNSL 573 (1004)
Q Consensus 502 li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~----~~~~~~g~~~~~~~~~~L 573 (1004)
|-..|+..+ ..++|..++.+..+.- ..|...|..+-..+-.. +.......+ ..+...+-.+.+.+.|.+
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~--d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT--DPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 445555554 3345555555444421 22333333333222221 111112222 234455666788899999
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC-------CH-----h-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK-------NS-----V-TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL 640 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 640 (1004)
...+...|.++.|...|++...+ |. + +--.+...+-..++++.|.+.|...... .|.-++-..=+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999876432 22 1 1222455667778999999999999874 45433222212
Q ss_pred HHHh-hhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCC----CCC-CChhHHHHHHHHHHh---
Q 001852 641 AAAA-KLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQ----PVD-RPRLSWNILISVFAR--- 711 (1004)
Q Consensus 641 ~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~----~~~-~~~~~~~~li~~~~~--- 711 (1004)
.+.+ ..+.+.++...+..+.... ..++.+++-+.+.|.+...+..|.+-|+. ... +|..+.-+|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 1111 2355667777776665532 44667777788889888888888884443 332 466666666664432
Q ss_pred ---------cCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhc
Q 001852 712 ---------HGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS 782 (1004)
Q Consensus 712 ---------~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 782 (1004)
.+..++|+++|.+.+...+-|...=+++.-.+++.|++.+|+.+|.+..+. ..-....|..++.+|...
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHH
Confidence 345678999999998853338888888888999999999999999999874 334456677889999999
Q ss_pred CChHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 783 GRLAEAETFINKM--P--VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 783 g~~~eA~~~i~~m--~--~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
|++-.|.++++.. . -+.+..+..-|..++...|.+.+|..++..++.+.|.|+..-..++-
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999774 2 23456688889999999999999999999999999999885444443
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.3e-13 Score=151.54 Aligned_cols=544 Identities=14% Similarity=0.084 Sum_probs=298.4
Q ss_pred hhhHHHhhccCC--CCchhHHHHHHHHH--HhCCCchHHHHHHHHHHHc--CCCCChhhHHHHHHHhcccCChhhhHHHH
Q 001852 178 INKARRVFEEMP--VRNVVSWTSLMVAY--LDNGSPIEVVDLYRYMRRE--GVCCNENTFAAVITSCGLTENDLLGYLFL 251 (1004)
Q Consensus 178 ~~~A~~~f~~m~--~~~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 251 (1004)
++.|.+.|.... .|+-+. -.+..++ ...+++..|+.+|...... ..+||... .+-..+...++.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 466666666554 222211 1122222 2356777777777775442 34444422 1223344666777777666
Q ss_pred HHHHHhcCCCChhhhhHHHHHhhC---CCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 001852 252 GHVIKFGFHYTVPVANSLISMFGN---FGSVKEARCIFDSMH---VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQ 325 (1004)
Q Consensus 252 ~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 325 (1004)
....+... .++.++-.|--.-.. ...+..+..++...- ..|.+..|.|-+.|.-.|+++.++.+...+.....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 66665432 112222111111111 122334444444332 23667777777777778888888887777765431
Q ss_pred C--CChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCC---CcchHHH
Q 001852 326 E--INSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSER---DSVSWNS 400 (1004)
Q Consensus 326 ~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~ 400 (1004)
. .-...|-.+-+++-..|+++.|...+-...+..-..-+..+-.|..+|.+.|+++.|...|+.+... +..+-..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 1123466666777777888888777766665543222334455677788888888888887776542 3334444
Q ss_pred HHHHHHcCC----CHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHH----HHHhCCCCchHHHHHHH
Q 001852 401 LVASHVQDE----KYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHAL----VITMGLHDNLIVGNALV 472 (1004)
Q Consensus 401 li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~Li 472 (1004)
+...|...+ ..+.|..++.+..+.- .-|...|..+-..+- .++......++.. +...+-.+.+.+.|.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 455555543 3345555554444321 123333333333332 2333333444433 33445556777777777
Q ss_pred HHHHccCChHHHHHHHhcCCC-------CCee-------chhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 001852 473 SMYAKSGMMSEAKQVFRIMPK-------RDTV-------TWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVL 538 (1004)
Q Consensus 473 ~~y~~~g~~~~A~~~f~~m~~-------~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 538 (1004)
..+...|+++.|...|+.... +|.. -|| +...+-..++.+.|.+.|+...+. .|+
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~-------- 528 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPG-------- 528 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--Cch--------
Confidence 777778888887777766542 1221 111 222233345666666666666553 222
Q ss_pred HhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHc-------CChhhHHHHHhcCCC---CCHhHHHHHHHHH
Q 001852 539 GACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKC-------GDLNSSNYIFEGLAE---KNSVTWNAMIAAN 608 (1004)
Q Consensus 539 ~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-------g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 608 (1004)
.|++|.+. +...+|...+....+ .|+..|+-+...|
T Consensus 529 ----------------------------------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 529 ----------------------------------YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred ----------------------------------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 23333333 455566666665543 3677777777777
Q ss_pred HhcCChHHHHHHHHHhhhcC-CCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhH
Q 001852 609 ALHGQGEEVLKLLVKMRHTG-VYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDV 687 (1004)
Q Consensus 609 ~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 687 (1004)
.+...+..|.+-|....+.- ..+|..+..+|-+.|... +...-- ++ -...+..+.|
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~------------l~~~~r--n~---------ek~kk~~~KA 631 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA------------LHNPSR--NP---------EKEKKHQEKA 631 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH------------hccccc--Ch---------HHHHHHHHHH
Confidence 77777777777655554321 224544443333322110 000000 00 1122445566
Q ss_pred hhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 001852 688 LRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFG 764 (1004)
Q Consensus 688 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 764 (1004)
+..|.++.. +|..+-|.+...++..|++.+|..+|.+..+...-+.-+|..+...|...|++-.|++.|+...+++.
T Consensus 632 lq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666665543 35556666777777777777777777777776333444577777777777777777777777777666
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 765 VPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 765 ~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
-.-+.+...||..++-++|++.+|.+.....
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556677777777777777777777766554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=7.3e-15 Score=178.63 Aligned_cols=185 Identities=10% Similarity=0.009 Sum_probs=140.5
Q ss_pred HHhcCChhhHhhhcCCCCCCC---hh-HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-----HhHHHHHHHHHhccCC
Q 001852 678 YGKCGEIGDVLRIAPQPVDRP---RL-SWNILISVFARHGYFQKAIETFDEMLKYVKPD-----HVTFVSLLSACNHGGL 748 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd-----~~t~~~ll~a~~~~g~ 748 (1004)
+...|+.++|+..|+++...+ +. .--.+...|...|++++|+..|+++.+. .|. ......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH-PETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-CCCCCCCChHHHHHHHHHHHhccc
Confidence 345688888888888876532 11 1122466788889999999999988764 332 2345566677888999
Q ss_pred HHHHHHHHHHhHhhcC----------CCCCC---chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 001852 749 VDKGLQYYNTMTTEFG----------VPAGI---EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKI 813 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~----------~~p~~---~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~ 813 (1004)
+++|..+++.+.+... -.|+. ..+..++.++...|++++|++.++++ ...|+ ...|..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999988876421 11221 23456778888999999999999886 34454 5588889888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.|+.+.|+..++++++++|+++..++.++.++...|+|++|..+.+.+.+
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777654
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=1.2e-14 Score=173.69 Aligned_cols=247 Identities=14% Similarity=0.026 Sum_probs=173.0
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhh
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 646 (1004)
++.+...|...|++++|...|+...+. +..+|..+...+...|++++|+..|++..+. .|
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p--------------- 396 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NS--------------- 396 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC---------------
Confidence 344455555566666666666554322 2345555555555666666666666555442 22
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
.+..++..+...|...|++++|...|++... .+...|..+...+.+.|+.++|+..|+
T Consensus 397 -------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 397 -------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2455677777888888888888888887653 345678888999999999999999999
Q ss_pred HHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC--ch------HHHHHHHHHhcCChHHHHHHHHhC
Q 001852 724 EMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI--EH------CVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 724 ~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~------y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+.++..+.+...+..+..++...|++++|+..|+...+. .|+. .+ +.....++...|++++|.+++++.
T Consensus 458 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 998853336778888999999999999999999998753 3321 11 111223344579999999999885
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 796 -PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 796 -~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.+.|+.. +|..|...+...|+++.|...+++++++.+.... ......|.++.+++...++
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e--------~~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE--------LVQAISYAEATRTQIQVQE 596 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 6667654 7888999999999999999999999999876433 1123356677777665554
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=5.7e-15 Score=175.56 Aligned_cols=259 Identities=12% Similarity=0.050 Sum_probs=180.1
Q ss_pred hHHhhHHHHcCChhhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhh
Q 001852 571 NSLITMYAKCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLA 647 (1004)
Q Consensus 571 ~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 647 (1004)
..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|...++++... .|+.......+..+...|
T Consensus 114 ~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g 191 (656)
T PRK15174 114 LLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKS 191 (656)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcC
Confidence 4455556666666666666665543 24556667777777777777777777766553 233322222233456667
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHH----HHH
Q 001852 648 VLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQK----AIE 720 (1004)
Q Consensus 648 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~ 720 (1004)
++++|...+..+.+....++......+...|.+.|+.++|...|++... .+...+..+...|...|+.++ |+.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 7777777776665554333334444556677778888888888776653 345677788888888888875 788
Q ss_pred HHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 001852 721 TFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PV 797 (1004)
Q Consensus 721 l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~ 797 (1004)
.|++.++. .| +...+..+..++...|++++|+.++++..+. .|+ ...+..+..+|.+.|++++|.+.++++ ..
T Consensus 272 ~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 272 HWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888874 55 5667888888899999999999999888753 444 355666788888999999999888877 45
Q ss_pred CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 798 TPNDLVWR-SLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 798 ~p~~~~~~-~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
.|+...|. .+..++...|+.+.|+..++++++.+|++.
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 67654443 345567788999999999999999999875
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=1.4e-14 Score=176.04 Aligned_cols=392 Identities=10% Similarity=0.008 Sum_probs=256.5
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCC
Q 001852 368 NTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPG 444 (1004)
Q Consensus 368 ~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 444 (1004)
.-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++.... .
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~----------------- 79 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--E----------------- 79 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-----------------
Confidence 3444445556666666666665543 12233566666666666666666666665442 1
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--C-CeechhhhhHHhhhCCChhHHHHHHHH
Q 001852 445 FVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--R-DTVTWNALIGGHSEKEEPDKALKAYKR 521 (1004)
Q Consensus 445 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 521 (1004)
+.+......+...+...|++++|...+++..+ | +.. |..+...+...|+.++|+..+++
T Consensus 80 -----------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 80 -----------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred -----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 22334445566666677777777777766542 2 333 66666677777777777777777
Q ss_pred HHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHh--
Q 001852 522 MREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSV-- 599 (1004)
Q Consensus 522 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~-- 599 (1004)
..+. .|+... +...+...+.+.|..+.|...++.... ++.
T Consensus 142 al~~--~P~~~~-----------------------------------~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~ 183 (765)
T PRK10049 142 ALPR--APQTQQ-----------------------------------YPTEYVQALRNNRLSAPALGAIDDANL-TPAEK 183 (765)
T ss_pred HHHh--CCCCHH-----------------------------------HHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH
Confidence 7663 333222 223344555566777777777776654 111
Q ss_pred ------HHHHHHHHHH-----hcCCh---HHHHHHHHHhhhc-CCCCChh-hHHH----HHHHHhhhhhHHHHHHHHHHH
Q 001852 600 ------TWNAMIAANA-----LHGQG---EEVLKLLVKMRHT-GVYFDRF-SLSE----GLAAAAKLAVLEEGHQLHGLA 659 (1004)
Q Consensus 600 ------~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~~~----ll~a~~~~~~~~~a~~~~~~~ 659 (1004)
....++..+. ..+++ ++|++.++.+... ...|+.. .+.. .+.++...++.++|...+..+
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1112222221 12233 6788888888754 2333322 1111 134456678888898888888
Q ss_pred HHhCCC-CChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccC-
Q 001852 660 TKLGFD-LDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP-------RLSWNILISVFARHGYFQKAIETFDEMLKYVK- 730 (1004)
Q Consensus 660 ~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~- 730 (1004)
.+.+.+ |+ .....+.+.|...|++++|+..|+++...+ ...+..+..++...|++++|+++++++.+..+
T Consensus 264 l~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 264 KAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 776532 22 122335778999999999999988765422 23456677788999999999999999987422
Q ss_pred -----------CCH---hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 731 -----------PDH---VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 731 -----------pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
|+. ..+..+..++...|+.++|++.++++... .+-+...+..++.++.+.|+.++|++.+++.
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 221 23456777889999999999999999764 3334577888999999999999999999987
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 796 PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 796 ~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
...|+. ..+..+.......|+++.|+..++++++.+|+++..
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 567774 477777777888899999999999999999999853
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.69 E-value=1.1e-14 Score=173.06 Aligned_cols=345 Identities=11% Similarity=0.004 Sum_probs=266.8
Q ss_pred HccCChHHHHHHHhcCCCC------CeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhh
Q 001852 476 AKSGMMSEAKQVFRIMPKR------DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLI 549 (1004)
Q Consensus 476 ~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 549 (1004)
.|..+++.---.|..-+++ +..-...++..+.+.|++++|+.+++..+.....+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~------------------ 77 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD------------------ 77 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh------------------
Confidence 3455565555555555432 2223344567788899999999999988875322221
Q ss_pred cccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 001852 550 HGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRH 626 (1004)
Q Consensus 550 ~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 626 (1004)
....++......|++++|...|+++... +...|..+...+.+.|++++|+..|++...
T Consensus 78 -------------------~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 78 -------------------LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred -------------------HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223444455689999999999988543 667899999999999999999999999987
Q ss_pred cCCCCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC----ChhH
Q 001852 627 TGVYFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR----PRLS 701 (1004)
Q Consensus 627 ~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~~ 701 (1004)
. .|+. ..+..+...+...|+.++|...+..+......+.. .+..+ ..+.+.|++++|...++++... +...
T Consensus 139 l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 139 A--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred h--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 4 5654 45666777889999999999999888776544333 33333 3478899999999999886543 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHH----HHHHHHHhHhhcCCCCC-CchHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDK----GLQYYNTMTTEFGVPAG-IEHCVCII 776 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~-~~~y~~lv 776 (1004)
+..+...+...|+.++|++.|+++.+..+.+...+..+..++...|++++ |...|++..+ +.|+ ...+..++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg 291 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYA 291 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHH
Confidence 45567788999999999999999998533366778889999999999986 8999999875 3454 47788899
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 777 DLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
.+|.+.|++++|...+++. ...|+ ..++..|..++...|+++.|...++++++.+|+++..+..++.+|...|++++|
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999887 45666 457888888899999999999999999999999987777789999999999999
Q ss_pred HHHHHHHhhC
Q 001852 855 ENVRRQMGWN 864 (1004)
Q Consensus 855 ~~~~~~m~~~ 864 (1004)
....+...+.
T Consensus 372 ~~~l~~al~~ 381 (656)
T PRK15174 372 ESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHh
Confidence 9987765443
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=7.1e-14 Score=155.48 Aligned_cols=259 Identities=11% Similarity=0.050 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCC
Q 001852 214 DLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRD 293 (1004)
Q Consensus 214 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d 293 (1004)
.++-.|...|+.||.+||.++|..|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56677888999999999999999999999999998 9999998888889999999999999999877776 678
Q ss_pred cchHHHHHHHHHhCCCchhHHHHHHH-HH-------HcCCCCChhhHHHHHHhhcCCC-C------hhhHHHHHHHHHHh
Q 001852 294 TISWNSMISVYSHSGLCDQSLKCFHW-MR-------HVGQEINSTTFSTLLSACGSVD-N------LKWGRGIHGLAVKL 358 (1004)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~ 358 (1004)
..+|+.|..+|.+.|+... ++..++ |. ..|+..-..-|...+++|-..- + ...-+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999765 333333 22 2233322333333333332111 1 11112333444444
Q ss_pred cCCCchHHHHH----HHHHHHhc-CChhhHHHHHhcCC-CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhh
Q 001852 359 ALNSNVWVCNT----LLAMYSEA-GRSEDAKFVFQEMS-ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVT 432 (1004)
Q Consensus 359 g~~~~~~~~~~----Li~~y~~~-g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 432 (1004)
+....+..++. .++-.... ..+++-........ .++..+|.+.+..-..+|+.+.|..++.+|.+.|+..+..-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 31111111110 12111111 12233222333333 37889999999999999999999999999999999999998
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHH
Q 001852 433 FTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEA 484 (1004)
Q Consensus 433 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 484 (1004)
|..+|-+ .++......+.+-|...|+.|+..++..-+-...+.|....+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 8888876 788888899999999999999999988877777666654333
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.3e-12 Score=134.15 Aligned_cols=328 Identities=15% Similarity=0.141 Sum_probs=218.2
Q ss_pred cchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHh--hcCCCChhhHH-HHHHHHHHhcCCCchHHHHHH
Q 001852 294 TISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSA--CGSVDNLKWGR-GIHGLAVKLALNSNVWVCNTL 370 (1004)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~L 370 (1004)
+++=|.|+. ...+|...++.-+|+.|+..|+......-..|+.. +.+..+.--++ +-|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 445555554 44578889999999999999988877766666554 22333333222 2222333333221 1122
Q ss_pred HHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHH
Q 001852 371 LAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGK 450 (1004)
Q Consensus 371 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 450 (1004)
|.|.+.+ ++-+...+...++.+||.|+++--..+.|.+++++-.....+.+..+|+.+|.+.+- ..++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 4455444 444555567789999999999999999999999999999999999999999988653 3448
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHH----hcCC----CCCeechhhhhHHhhhCCChhH-HHHHHHH
Q 001852 451 IIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVF----RIMP----KRDTVTWNALIGGHSEKEEPDK-ALKAYKR 521 (1004)
Q Consensus 451 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 521 (1004)
.+..+|+...+.||..++|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+++.+++.+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999999998876543 2332 4555566666666555555533 3333333
Q ss_pred HHh----cCCCC----ChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC
Q 001852 522 MRE----EGTPM----NYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL 593 (1004)
Q Consensus 522 m~~----~g~~p----~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 593 (1004)
++. ..++| |..-|.+.+.-|.+. .+.+.+.++++.+.. |+- ++.|
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l-~d~~LA~~v~~ll~t--------------------g~N------~~~i 391 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSL-RDLELAYQVHGLLKT--------------------GDN------WKFI 391 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHc--------------------CCc------hhhc
Confidence 332 12222 222344444444444 444444444433221 000 0000
Q ss_pred C--CCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 001852 594 A--EKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFD 665 (1004)
Q Consensus 594 ~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 665 (1004)
. ....+-|..+....++....+.-+.+|+.|.-.-+-|+..+...++.|....+.++...+++..++..|..
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0 01234566677788888888999999999998888999999999999999999999888888888777643
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=6.1e-13 Score=136.38 Aligned_cols=438 Identities=14% Similarity=0.139 Sum_probs=283.8
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc--ccCChhhh-HHHHHHHHHhcCCCChhhhhHH
Q 001852 193 VVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCG--LTENDLLG-YLFLGHVIKFGFHYTVPVANSL 269 (1004)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 269 (1004)
+++=|.++. ....|....+.-+|+.|++.|+..++..-..+++.-+ ...++..+ .+-|-.|.+.|-.. ..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s---- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS---- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc----
Confidence 345555554 4567889999999999999999888877666665543 33333322 22333344444222 222
Q ss_pred HHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHH
Q 001852 270 ISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGR 349 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 349 (1004)
-|.|++.+ ++-+...++..||.+||.|+|+-...+.|.+++++-.....+.+..+||.+|.+-+ +..++
T Consensus 190 ----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 190 ----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred ----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 24566554 44455556778999999999999999999999999999999999999999998754 34458
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHH----hcCC----CCCcchHHHHHHHHHcCCCHHH-HHHHHHH
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVF----QEMS----ERDSVSWNSLVASHVQDEKYID-ALKIFSN 420 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 420 (1004)
.+..+|+...+.||.+|+|++++..++.|+++.|++.+ .+|. +|...+|..+|..+++.++..+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999999988776544 4454 4788899999999999888754 4444444
Q ss_pred hhh----cCCc---C-CHhhHHHHHHhhcCCCChHHHHHHHHHHHHhC----CCCc---hHHHHHHHHHHHccCChHHHH
Q 001852 421 MLQ----KQRL---V-NYVTFTSALAACSDPGFVVQGKIIHALVITMG----LHDN---LIVGNALVSMYAKSGMMSEAK 485 (1004)
Q Consensus 421 m~~----~g~~---p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~~~g~~~~A~ 485 (1004)
... +.++ | |...|...+..|.+..+.+.|.++++.+.... +.|+ .+-|..+....|....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 2233 3 55678888999999999999999998776421 2222 345666777777777888888
Q ss_pred HHHhcCCC----CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhh
Q 001852 486 QVFRIMPK----RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLT 561 (1004)
Q Consensus 486 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~ 561 (1004)
..++.|.. |+..+-..++.+..-.|.++-.-+++.+|...|-.-+... +..+...+.+.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l-----------------~eeil~~L~~~ 481 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL-----------------REEILMLLARD 481 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH-----------------HHHHHHHHhcC
Confidence 88877763 4555555666666667777777777777777653322222 22333333333
Q ss_pred cccCchhHHhHHhhHHHHcC-ChhhH-HHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCCh---
Q 001852 562 GFESHKYVQNSLITMYAKCG-DLNSS-NYIFEGLAEK--NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGV-YFDR--- 633 (1004)
Q Consensus 562 g~~~~~~~~~~Li~~y~k~g-~~~~A-~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--- 633 (1004)
...|+..-...|-...+||- ++.++ ...-.++.+. .....+.+...+.+.|+.++|.++|....+.+- -|-.
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 33343332222333333321 01111 1111122222 445566677777888888888888887755432 2222
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 001852 634 FSLSEGLAAAAKLAVLEEGHQLHGLATKLGF 664 (1004)
Q Consensus 634 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 664 (1004)
..+.-++++.....+..+|...++.+...++
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2333444555555566666666666654443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=7e-13 Score=157.72 Aligned_cols=429 Identities=12% Similarity=0.055 Sum_probs=233.8
Q ss_pred CCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHH---HHHHHcCCCHHHHHHHH
Q 001852 342 VDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSL---VASHVQDEKYIDALKIF 418 (1004)
Q Consensus 342 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~ 418 (1004)
.|+++.|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|+++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444433222112233 566666667777777777777776544333332 33566667777777777
Q ss_pred HHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeec
Q 001852 419 SNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVT 498 (1004)
Q Consensus 419 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 498 (1004)
+++.+.. +.+..++..++..|...++.++|++.++.+...++..
T Consensus 126 ~kaL~~d------------------------------------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 126 QSSLKKD------------------------------------PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHHhhC------------------------------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 7776541 2234555677788888899999999999887544433
Q ss_pred hhhhhHHhhh--CCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhH
Q 001852 499 WNALIGGHSE--KEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITM 576 (1004)
Q Consensus 499 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~ 576 (1004)
...+..+|.. .++..+|++.++++.+. .|+...+ +..++..
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~-----------------------------------~~~~~~~ 212 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEV-----------------------------------LKNHLEI 212 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHH-----------------------------------HHHHHHH
Confidence 3334445444 55565699999999885 3543332 2334444
Q ss_pred HHHcCChhhHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHH
Q 001852 577 YAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQL 655 (1004)
Q Consensus 577 y~k~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 655 (1004)
..+.|-...|.++..+-+.- +...+.-|- .+.|.+..+- +..|...- -.+-.-.+.+..-
T Consensus 213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~a~~vr~----a~~~~~~~-------~~r~~~~d~ala~ 273 (822)
T PRK14574 213 LQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAAAEQVRM----AVLPTRSE-------TERFDIADKALAD 273 (822)
T ss_pred HHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHHHHHHhh----cccccccc-------hhhHHHHHHHHHH
Confidence 55556666666665554422 111111000 0011111100 00000000 0000011222222
Q ss_pred HHHHHH-hCCCCC--hhHHhHH---HhhHHhcCChhhHhhhcCCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001852 656 HGLATK-LGFDLD--PFVTNAA---MDMYGKCGEIGDVLRIAPQPVDRP----RLSWNILISVFARHGYFQKAIETFDEM 725 (1004)
Q Consensus 656 ~~~~~~-~g~~~~--~~~~~~l---i~~y~k~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m 725 (1004)
.+.+.. .+-.|. +....+. +-++.+.|+..++++.|+.+.... ..+--+...+|...++.++|+.+|++.
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 222221 111111 1111222 223455666666666666665321 223445666677777777777777776
Q ss_pred hhc-c----CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcC----------CCCCC---chHHHHHHHHHhcCChH
Q 001852 726 LKY-V----KP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFG----------VPAGI---EHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 726 ~~~-~----~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~y~~lv~~l~r~g~~~ 786 (1004)
... . .| +......|..|+..+|++++|..+++++.+.-. -.|+. +.+..++..+.-.|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 543 1 11 222245566777777777777777777765211 01222 22344566677778888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 787 EAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 787 eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+|++.++++ ..-| |..++..+...++..|+...|++.++.+..++|++...+..++..+-+.|+|.+|.++.+...+
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 888777776 2333 3557777777777778888888888777778888877777777777777888887776655544
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=2e-11 Score=145.48 Aligned_cols=181 Identities=8% Similarity=0.047 Sum_probs=90.7
Q ss_pred hhCCCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHH---HHHhhcCCCChh
Q 001852 273 FGNFGSVKEARCIFDSMHVRDTI---SWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFST---LLSACGSVDNLK 346 (1004)
Q Consensus 273 ~~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~ 346 (1004)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+.. +...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45666666666666666532221 12255666666666666666666655 222222211 122344445555
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCC
Q 001852 347 WGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQR 426 (1004)
Q Consensus 347 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (1004)
.|.++++.+++.... ++.++..++..|...++.++|++.++++...+
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------------------------------- 166 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD-------------------------------- 166 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------------------------------
Confidence 555555555554322 23333444445555555555555555544332
Q ss_pred cCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC
Q 001852 427 LVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP 492 (1004)
Q Consensus 427 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 492 (1004)
|+...+..+.......++...|.+.++.+++.. +.+...+..++....+.|-...|.++...-+
T Consensus 167 -p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 167 -PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred -cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 222222222111212222222444444444432 3456777778888888888888887776644
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=2e-09 Score=116.67 Aligned_cols=489 Identities=15% Similarity=0.089 Sum_probs=375.7
Q ss_pred hcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHH
Q 001852 339 CGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDAL 415 (1004)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 415 (1004)
.....+.+.|+-++...++.- +.+...| -+|++..-++.|.++++...+ .+...|.+-..-=-++|+.+...
T Consensus 386 AVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 344455555777777776652 2233333 345555667778888776654 47778877776667788888877
Q ss_pred HHHHH----hhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHccCChHHHHHHHh
Q 001852 416 KIFSN----MLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDN--LIVGNALVSMYAKSGMMSEAKQVFR 489 (1004)
Q Consensus 416 ~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~ 489 (1004)
.+..+ +...|+..+...|..=-.+|-..|.+-.+..+....+..|++.. ..++..-...+.+.+.++-|+.+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 77654 45668888888888888888888888888888888888887543 4577777888888899998888887
Q ss_pred cCCC---CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCc
Q 001852 490 IMPK---RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESH 566 (1004)
Q Consensus 490 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~ 566 (1004)
...+ .+...|...+..=-.+|..++-..+|++....- |. .
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pk-----------------------------------a 583 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PK-----------------------------------A 583 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--Cc-----------------------------------c
Confidence 7653 356678777776667788888888888776631 11 1
Q ss_pred hhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 001852 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAA 643 (1004)
Q Consensus 567 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 643 (1004)
...|-....-+-+.|++..|+.+++..-+. +...|-+-+..-..+.++++|..+|.+... ..|....|.--+..-
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLE 661 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHH
Confidence 112233334455679999999888776442 667898889999999999999999999877 567777777666777
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHHHHHhcCCHHHHHH
Q 001852 644 AKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILISVFARHGYFQKAIE 720 (1004)
Q Consensus 644 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~ 720 (1004)
-.++..++|+++++..++. ++.-...|-.+.+.|-..++++.|.+.|....+ |+ +..|-.+...--+.|+..+|..
T Consensus 662 r~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 7789999999999887775 344456788899999999999999999988775 44 4579988888889999999999
Q ss_pred HHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 001852 721 TFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPN 800 (1004)
Q Consensus 721 l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~ 800 (1004)
++++.....+-|...|...+..=.+.|+.++|..+..+..++ .+.+..-|.--|.+..|.++-..+.+.+++-. -|
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~d 816 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HD 816 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CC
Confidence 999998764448889999999999999999999999999874 44555778888889999998777777777654 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeC
Q 001852 801 DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSK 878 (1004)
Q Consensus 801 ~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~ 878 (1004)
+.+..+....+....+++.|...++++++.+|++...+..+-..+...|.-++-.+|+++.... .+.-|..|+-+.
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 5566666777788899999999999999999999999999999999999999999998876643 334577887554
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=1.1e-09 Score=123.76 Aligned_cols=629 Identities=12% Similarity=0.104 Sum_probs=306.0
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhc-CCCChhhhhHHHHHhhCCCCHHHHHHH
Q 001852 207 GSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFG-FHYTVPVANSLISMFGNFGSVKEARCI 285 (1004)
Q Consensus 207 g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 285 (1004)
|+.++|.+++.+..+.. +-+...|-.|-..+-..|+.+.+...+ ++... .+.|...|..+-....+.|.++.|.-.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 77777777777776643 344556666766676777666555433 22222 233456666666666777777777777
Q ss_pred HhhCCCCCcchHH---HHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhH----HHHHHhhcCCCChhhHHHHHHHHHHh
Q 001852 286 FDSMHVRDTISWN---SMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTF----STLLSACGSVDNLKWGRGIHGLAVKL 358 (1004)
Q Consensus 286 f~~m~~~d~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~ 358 (1004)
|.+..+.+..-|- --+..|-+.|+...|.+.|.+|.....+.|-.-+ -.+++.+...++-+.|.+.+......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7665533222222 2234566667777777777776654321111111 12223333333334444444444332
Q ss_pred -cCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC----CCcchHHHH------HHHHHcCCCHHHHHHHHHHhhhcCCc
Q 001852 359 -ALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE----RDSVSWNSL------VASHVQDEKYIDALKIFSNMLQKQRL 427 (1004)
Q Consensus 359 -g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~l------i~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (1004)
+-..+...++.++.+|.+....+.|......+.. +|..-|.+- -..++.. ..++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~--------------~~~~s 375 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV--------------GKELS 375 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC--------------CCCCC
Confidence 1122333444445555555444444444433322 111111000 0000000 00000
Q ss_pred CCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHccCChHHHHHHHhcCCC----CCeechhh
Q 001852 428 VNYVTFTSALAACSDPGFVVQGKIIHALVITMGL--HDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK----RDTVTWNA 501 (1004)
Q Consensus 428 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~ 501 (1004)
++... .-+.-++.+....+....+...+.+..+ .-+...|.-+.++|...|++.+|..+|..+.. .+...|--
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 11001 0111222334444444444444444442 22344555556666666666666666655542 13445555
Q ss_pred hhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhh--------hhhcccCchhHHhHH
Q 001852 502 LIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHI--------VLTGFESHKYVQNSL 573 (1004)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~--------~~~g~~~~~~~~~~L 573 (1004)
+...|...|.+++|++.|...+. ..|+..-...-|+......+..+.+.+....+ ...+..|+..+.--.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 66666666666666666665555 23433222111111111112223333322221 112233444444444
Q ss_pred hhHHHHcCChhhHHHHHhcCCC--------------------------CCHhHHHHHHHHHHhcCChHHHH------HHH
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAE--------------------------KNSVTWNAMIAANALHGQGEEVL------KLL 621 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~--------------------------~~~~~~~~li~~~~~~g~~~~A~------~l~ 621 (1004)
.+.|.+.|+.++=..+-..|.. ........++.+-.+.++..... ..+
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 5555555555542222111110 01112222233322222211111 111
Q ss_pred HHhhhcCCCCChh--hHHHHHHHHhhhhhHHHHHHHHHHHHHhC-C-CCCh---hHHhHHHhhHHhcCChhhHhhhcCCC
Q 001852 622 VKMRHTGVYFDRF--SLSEGLAAAAKLAVLEEGHQLHGLATKLG-F-DLDP---FVTNAAMDMYGKCGEIGDVLRIAPQP 694 (1004)
Q Consensus 622 ~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~-~~~~---~~~~~li~~y~k~g~~~~A~~~~~~~ 694 (1004)
.--...|+..|.. -+.-++.+.++.+.+++|..+...+.... + .++. ..-...+......+++.+|...+..|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111222322221 34455667778888888888776665432 1 2222 23344555566778888888777766
Q ss_pred CCC-----Ch---hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 001852 695 VDR-----PR---LSWNILISVFARHGYFQKAIETFDEMLKYVKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFG 764 (1004)
Q Consensus 695 ~~~-----~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 764 (1004)
... ++ ..||...+...++|+-.--.+++..... .+|+. ........-....|.+.-|+.++-....
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~-~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--- 768 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV-KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--- 768 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---
Confidence 543 33 4677767777777665554454444333 23332 2222222333456677778877666643
Q ss_pred CCCCC-chHHHHHHHH----------HhcCChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 765 VPAGI-EHCVCIIDLL----------GRSGRLAEAETFINKM-PVT-P--NDLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 765 ~~p~~-~~y~~lv~~l----------~r~g~~~eA~~~i~~m-~~~-p--~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
..|+. -.--||+-++ .|.-.+-++..|+++. ... + ..-+.-+++.+|..-|=+-.|+..|+++++
T Consensus 769 ~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 769 QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 44552 2222333222 2233345666666554 121 2 234777899999999999999999999999
Q ss_pred cCCCCCC------------CeehhhhHhhhcCCchHHHHHHH
Q 001852 830 LDPSDDS------------SYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 830 l~p~~~~------------~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
+.|.+-. +-..|.-||-..|+...|.++.+
T Consensus 849 ~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 849 VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 9875422 12346679999999999988755
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=4.2e-14 Score=151.55 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 646 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
.++.+.|.+.+..+...+.. ++..+..++.. ...++.++|.+++++..+ ++...|..++..+...|+++++.++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444433222 44456666666 678889999888877643 566778888889999999999999999
Q ss_pred HHhhc--cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhCC--CC
Q 001852 724 EMLKY--VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKMP--VT 798 (1004)
Q Consensus 724 ~m~~~--~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m~--~~ 798 (1004)
+.... .++|...|..+...+.+.|+.++|++.+++..+. .|+ ......++.++...|+.+++.+.++... ..
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 98765 4557777888888999999999999999999764 564 5677788999999999999888887651 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 799 PNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 799 p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
+|+..|..+..++...|+.+.|...++++++..|+|+.....++.++...|+.++|.++|+..
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455689999999999999999999999999999999999999999999999999999998764
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=3.7e-09 Score=119.62 Aligned_cols=519 Identities=12% Similarity=0.074 Sum_probs=259.2
Q ss_pred HHHhhCCCCHHHHHHHHhhCCC--C---CcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChh--------------
Q 001852 270 ISMFGNFGSVKEARCIFDSMHV--R---DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINST-------------- 330 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 330 (1004)
+..|...++-+.|.+.++.... . +...+|.++..|.+...++.|+.....+......+|..
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 3334444555555555555432 1 33456666666777777777777666665522222211
Q ss_pred --------hHH----HHHHhhcCCCChhhHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC----
Q 001852 331 --------TFS----TLLSACGSVDNLKWGRGIHGLAVKLA--LNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---- 392 (1004)
Q Consensus 331 --------t~~----~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---- 392 (1004)
.|. .+.-++......+....+...+.+.. +.-++..|.-+.++|...|++.+|.++|..+..
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 111 12223344555555666666666665 334556777777777788888888888777754
Q ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHH-HHHHhhcCCCChHHHHHHHHHHH--------HhCCCC
Q 001852 393 RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFT-SALAACSDPGFVVQGKIIHALVI--------TMGLHD 463 (1004)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~--------~~g~~~ 463 (1004)
.+...|--+..+|...|.+++|.+.|...+.. .|+..--. .+-..+.+.|+.++|.+.+..+. ..+..|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 25667777777787888888888877777653 34432222 22222345566666666655532 223344
Q ss_pred chHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHh-c--CCCCChhhHHHHHHh
Q 001852 464 NLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMRE-E--GTPMNYITFANVLGA 540 (1004)
Q Consensus 464 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~--g~~p~~~t~~~ll~a 540 (1004)
+....--..+.|.+.|+.++=..+-..|..+ .....++. -+. .+ +++.. . +..-...+......+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~--~~~~~~~f--~~~---~k-----~r~~~~~~~~~~~~~~~~~~~~~~ 592 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVDD--FLKKRYIF--PRN---KK-----KRRRAIAGTTSKRYSELLKQIIRA 592 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhc--chH---HH-----HHHHhhccccccccchhHHHHHHH
Confidence 4444444555555555555432222221100 00000000 000 00 00000 0 011111122222222
Q ss_pred hcCCcch--hhcccch---hhhhhhhcccCch--hHHhHHhhHHHHcCChhhHHHHHhcCCCCC-----Hh----HHHHH
Q 001852 541 CLNPGDL--LIHGMPI---HTHIVLTGFESHK--YVQNSLITMYAKCGDLNSSNYIFEGLAEKN-----SV----TWNAM 604 (1004)
Q Consensus 541 ~~~~~~~--~~~~~~i---~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-----~~----~~~~l 604 (1004)
..+.+++ .+.+..- ......+|+.-+. ..+.-++...++.++.++|..+...+..-+ .. .=..+
T Consensus 593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~ 672 (895)
T KOG2076|consen 593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLG 672 (895)
T ss_pred HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHH
Confidence 2222111 1111111 1111112222222 344567788899999999999988775432 21 22445
Q ss_pred HHHHHhcCChHHHHHHHHHhhhc-CC--CCCh-hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHh
Q 001852 605 IAANALHGQGEEVLKLLVKMRHT-GV--YFDR-FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGK 680 (1004)
Q Consensus 605 i~~~~~~g~~~~A~~l~~~m~~~-g~--~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k 680 (1004)
+.+....+++.+|...++.|... +. .|.. ..|+..++.....++-.--..+...+.......++.....-.+....
T Consensus 673 l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~ 752 (895)
T KOG2076|consen 673 LKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFV 752 (895)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhh
Confidence 67778899999999999999764 11 2221 22333344444443322222222222222222223333333445567
Q ss_pred cCChhhHhhhcCCCC--CCChhHHHHH-HHHH----------HhcCCHHHHHHHHHHHhhccCC--CHhHHHHHHHHHhc
Q 001852 681 CGEIGDVLRIAPQPV--DRPRLSWNIL-ISVF----------ARHGYFQKAIETFDEMLKYVKP--DHVTFVSLLSACNH 745 (1004)
Q Consensus 681 ~g~~~~A~~~~~~~~--~~~~~~~~~l-i~~~----------~~~g~~~~A~~l~~~m~~~~~p--d~~t~~~ll~a~~~ 745 (1004)
++.+..|...+-+.. .||....|.. ..+| .+|-.+-.++..+.+-.+.-.+ ....|..+..||-+
T Consensus 753 ~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~ 832 (895)
T KOG2076|consen 753 NASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQ 832 (895)
T ss_pred ccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 788888876554432 2332222221 1111 1233345566666665554122 44567778888888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCC---chHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001852 746 GGLVDKGLQYYNTMTTEFGVPAGI---EHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 746 ~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~ 822 (1004)
.|.+.-|.+++++... ++|-. .++. .+.+. - ...+ +|-=.|+..||+++|.+
T Consensus 833 ~gl~~LA~~YYekvL~---~~p~~~~~~~~d--------~~dLr------------k-eAA~-NL~LIY~~SGn~~lArq 887 (895)
T KOG2076|consen 833 IGLVHLAVSYYEKVLE---VSPKDVTDPKED--------NYDLR------------K-EAAY-NLHLIYKKSGNMQLARQ 887 (895)
T ss_pred cccHHHHHHHHHHHhC---CCccccccccCC--------cccHH------------H-HHHh-hhhhhhccCCcHHHHHH
Confidence 8888888888888863 44322 1111 00000 0 1122 23335778899999988
Q ss_pred HHHHH
Q 001852 823 AAEHL 827 (1004)
Q Consensus 823 ~~~~~ 827 (1004)
++++-
T Consensus 888 il~ky 892 (895)
T KOG2076|consen 888 ILEKY 892 (895)
T ss_pred HHHhh
Confidence 88764
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.3e-10 Score=120.01 Aligned_cols=208 Identities=15% Similarity=0.257 Sum_probs=127.0
Q ss_pred cCChhhHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 001852 580 CGDLNSSNYIFEGLAEKNSVTWNAMI---AANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLH 656 (1004)
Q Consensus 580 ~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 656 (1004)
.|++++|.+.+.+....|...-.+|. -.+...|+.++|++.|-++... +.-+...+..+.+.|..+.+..+|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 35555555555555554433332222 2345556666666666555332 2223334444445555555555555555
Q ss_pred HHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH
Q 001852 657 GLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH 733 (1004)
Q Consensus 657 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~ 733 (1004)
.++.. -++.|+.+.+.|.++|-+.|+-..|.+..-.-- ..|+.+..=|..-|....-+++|+.+|++..- +.|+.
T Consensus 582 ~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~ 659 (840)
T KOG2003|consen 582 MQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQ 659 (840)
T ss_pred HHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccH
Confidence 44432 245577778888888888888887777654332 23444444456667777778888888887655 68888
Q ss_pred hHHHHHHHHHh-ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 001852 734 VTFVSLLSACN-HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFIN 793 (1004)
Q Consensus 734 ~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~ 793 (1004)
+-|-.++..|. +.|++.+|.++++...+ .++.+.+....||.+.+..|. .+|.+.-.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc-hhHHHHHH
Confidence 88887776554 57888888888888766 456677777777777777775 34555443
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.39 E-value=5.4e-08 Score=105.92 Aligned_cols=460 Identities=11% Similarity=0.082 Sum_probs=300.8
Q ss_pred HHhhCCCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCCchhHHHHHHH----HHHcCCCCChhhHHHHHHhhcCCC
Q 001852 271 SMFGNFGSVKEARCIFDSMH---VRDTISWNSMISVYSHSGLCDQSLKCFHW----MRHVGQEINSTTFSTLLSACGSVD 343 (1004)
Q Consensus 271 ~~~~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~ 343 (1004)
-+|++..-++.|.+++.... ..+...|-+-...--.+|+.+...+++.+ +...|+..|...+..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 34445555666666665543 23556665555555566766666665543 445677777777777777777778
Q ss_pred ChhhHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHH
Q 001852 344 NLKWGRGIHGLAVKLALNSN--VWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIF 418 (1004)
Q Consensus 344 ~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 418 (1004)
..-.+..+....+..|+... ..+|+.--..+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 77777777777777776543 34677777777888888888888876654 35667777777667777788888888
Q ss_pred HHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC--CCCe
Q 001852 419 SNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP--KRDT 496 (1004)
Q Consensus 419 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~ 496 (1004)
++.+..- +-...-+....+..-..|++..|+.++..+.+.... +..++-+-+..-.....++.|+.+|.... .++.
T Consensus 574 qkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 7777642 112222222333334456666666666666655422 55566666666666666666666666544 2344
Q ss_pred echhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhH
Q 001852 497 VTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITM 576 (1004)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~ 576 (1004)
..|.--+..---.++.++|++++++-++. -|+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~-------------------------------------------- 685 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH-------------------------------------------- 685 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH--------------------------------------------
Confidence 44544444444445556666655554442 22211
Q ss_pred HHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 001852 577 YAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLH 656 (1004)
Q Consensus 577 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 656 (1004)
-.|-.+...+-+.++.+.|.+.|..-.+ .-|+
T Consensus 686 ----------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~------------------------ 717 (913)
T KOG0495|consen 686 ----------------------KLWLMLGQIEEQMENIEMAREAYLQGTK--KCPN------------------------ 717 (913)
T ss_pred ----------------------HHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCC------------------------
Confidence 1333444445555555555555554332 1222
Q ss_pred HHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH
Q 001852 657 GLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH 733 (1004)
Q Consensus 657 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~ 733 (1004)
.+..|-.|..+=.+.|.+-.|+.++++..- +|...|-..|..-.++|+.+.|..+.-+.++..+.+.
T Consensus 718 ----------~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 718 ----------SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred ----------CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 333455555555666677777777776553 4667899999999999999999999999988766688
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHH
Q 001852 734 VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASS 811 (1004)
Q Consensus 734 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~ 811 (1004)
..|.--+...-+.++-......+++.. -++.....+..++-...+++.|.+.|.+. ...||.. +|.-+..-.
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALkkce------~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALKKCE------HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHHhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 888888887778777666666665543 34455566777888899999999999886 6777754 888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCeehhh
Q 001852 812 KIHGNVELAKKAAEHLFELDPSDDSSYVLYS 842 (1004)
Q Consensus 812 ~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~ 842 (1004)
..||.-+.-+.++.+...-+|.....+...+
T Consensus 862 l~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 9999999999999999999998766554433
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.5e-09 Score=114.06 Aligned_cols=186 Identities=14% Similarity=0.198 Sum_probs=144.4
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhcc
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHG 746 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~ 746 (1004)
|--+..+|....+.++-...|+.... .|+.+|.--...+.-.+++++|+.-|++.+. +.| +...|.-+..+.-+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~-L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS-LDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHH
Confidence 33344455555666666666654432 3455566566666677889999999999888 466 667888888888889
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCC
Q 001852 747 GLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN---------DLVWRSLLASSKIHGN 816 (1004)
Q Consensus 747 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~---------~~~~~~ll~~~~~~g~ 816 (1004)
+.++++...|+..+++ .+-.++.|+....+|...+++++|.+.++.. .++|+ +.+-.+++-.-.+ +|
T Consensus 442 ~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d 518 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-ED 518 (606)
T ss_pred HHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hh
Confidence 9999999999999874 4556688998999999999999999998875 45554 4455555544333 89
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 817 VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 817 ~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
+..|+...++++++||...-+|..|+.+-.+.|+.++|.++.++
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=7.1e-11 Score=129.28 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHH--
Q 001852 698 PRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVC-- 774 (1004)
Q Consensus 698 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-- 774 (1004)
.+.+|.++...|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ..+..||++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ-LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc-cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHH
Confidence 345666666666666666666666666665 355 45566655555555566666666666543 234445444
Q ss_pred -HHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCc
Q 001852 775 -IIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851 (1004)
Q Consensus 775 -lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 851 (1004)
+.-.|.+.++++.|+-.++++ ++.|... +...+...+...|+.|+|.+.+++++.++|.|+-.-+..+.++...+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 334555666666666666655 5566544 3344444455556666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhh
Q 001852 852 DDVENVRRQMGW 863 (1004)
Q Consensus 852 ~~a~~~~~~m~~ 863 (1004)
++|.++.+++++
T Consensus 574 ~eal~~LEeLk~ 585 (638)
T KOG1126|consen 574 VEALQELEELKE 585 (638)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.1e-10 Score=115.39 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=163.0
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP---RLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSA 742 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a 742 (1004)
-+.+...+.+.|+-.++.++|...|++..+-| ...|+-|..-|....+...|++-++..++ +.| |...|.+|..+
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-INPRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-cCchhHHHHhhhhHH
Confidence 34566778888999999999999999887533 46899999999999999999999999999 566 99999999999
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMP--VTPNDLVWRSLLASSKIHGNVEL 819 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~--~~p~~~~~~~ll~~~~~~g~~e~ 819 (1004)
|.-.++..=|+-+|++..+ ..| |...+..|+++|.+.++++||.+-++..- ...+..++..|...+...++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999974 445 67889999999999999999999999873 23345788899999999999999
Q ss_pred HHHHHHHHHh-------cCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 820 AKKAAEHLFE-------LDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 820 a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
|.+.+++-++ .+|+-..+-..|++-+...++|++|..--.
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999998 455556677789999999999999987433
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=9.8e-11 Score=128.22 Aligned_cols=271 Identities=13% Similarity=0.019 Sum_probs=208.7
Q ss_pred ChhhHHHHHhcCCCC--CHh-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC----ChhhHHHHHHHHhhhhhHHHHHH
Q 001852 582 DLNSSNYIFEGLAEK--NSV-TWNAMIAANALHGQGEEVLKLLVKMRHTGVYF----DRFSLSEGLAAAAKLAVLEEGHQ 654 (1004)
Q Consensus 582 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~ll~a~~~~~~~~~a~~ 654 (1004)
+..+|...|+.++.. |+. ....+..+|...+++++|.++|+...+. .| +...|.++|--+-+. -+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh----HHHH
Confidence 467888888887654 443 3345677899999999999999998763 44 334555555432211 1112
Q ss_pred HHH-HHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 001852 655 LHG-LATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWNILISVFARHGYFQKAIETFDEMLKYVK 730 (1004)
Q Consensus 655 ~~~-~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 730 (1004)
++. .+++. -+..+.+|.++.+.|.-+++.+.|++.|++..+- ...+|+-+..-+.....+++|...|+..+. +.
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-VD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-CC
Confidence 222 22222 2457899999999999999999999999998864 456888888888999999999999999988 46
Q ss_pred C-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 001852 731 P-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRS 806 (1004)
Q Consensus 731 p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ 806 (1004)
| +-..|.++...|.+.++++.|...|+.+. .|.|.. ....++...+.+.|+.|+|+.+++++ -++|. +..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 6 55689999999999999999999999986 678865 66667788999999999999999997 33333 222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
-...+...++.++|.+.+|++.++-|+++..|.+|+.+|-..|+.+.|..=..-+-+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 334456679999999999999999999999999999999999999999775554443
No 42
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.5e-06 Score=99.05 Aligned_cols=750 Identities=14% Similarity=0.111 Sum_probs=377.0
Q ss_pred hhhHHHHHHHccCChhHHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhc
Q 001852 62 YNNTLINMYFKFGCLGYARYVFDKMGD---KNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDW 138 (1004)
Q Consensus 62 ~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 138 (1004)
+|-.-.+.+...|++++|-++-...|. ++.-|-+..=+.=...|.+..-+..|..+...| +.|..-=.-+.+.-..
T Consensus 362 Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~ 440 (1666)
T KOG0985|consen 362 LFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQ 440 (1666)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 333444455567888888888777665 455555555555556677777777777777666 3333221122222112
Q ss_pred cCcchhhHHHHHHHHh--------hcCCCCCcchhhhHHHHhhcCCChhhHHHhhccC-------------C-CCchhHH
Q 001852 139 SGFMVSEGIQVHGFSV--------KVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEM-------------P-VRNVVSW 196 (1004)
Q Consensus 139 ~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-------------~-~~~~~~~ 196 (1004)
.++.. -+-.++. +.|-..-++--+.-++.|.|.+-...+...|.+. . .||.
T Consensus 441 Q~Rkq----LlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdy--- 513 (1666)
T KOG0985|consen 441 QGRKQ----LLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDY--- 513 (1666)
T ss_pred hhHHH----HHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccH---
Confidence 22111 1111111 1121001111112233344444333333333332 2 2332
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCC
Q 001852 197 TSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNF 276 (1004)
Q Consensus 197 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 276 (1004)
-.+|+...+ -.++.+.++...|.+.. |....+..+...+...+....+..++-.+++..-+.-..+.+.|+.+-...
T Consensus 514 mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~ 590 (1666)
T KOG0985|consen 514 MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVH 590 (1666)
T ss_pred HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhcc
Confidence 234444444 45666666655555422 122233334444444444444444444444333222223334444333221
Q ss_pred CCHHHHHHHHhh-CCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcC---CCCChhhHHHHHHhhcCCCChhhHHHHH
Q 001852 277 GSVKEARCIFDS-MHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVG---QEINSTTFSTLLSACGSVDNLKWGRGIH 352 (1004)
Q Consensus 277 g~~~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 352 (1004)
+ .+-|..++-. |- ...-|..+.+.|.++|-...|++.+.++..-. +..+... .-.+-.+...-.++...+.+
T Consensus 591 a-PqVADAILgN~mF--tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~-pEwLv~yFg~lsve~s~ecl 666 (1666)
T KOG0985|consen 591 A-PQVADAILGNDMF--THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLN-PEWLVNYFGSLSVEDSLECL 666 (1666)
T ss_pred c-hHHHHHHHhcccc--ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCC-HHHHHHHHHhcCHHHHHHHH
Confidence 1 2222222211 11 11227778888888999999998877664211 0000000 01122233344677788888
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---------------CCcchHHHHHHHHHcCCCHHHHHHH
Q 001852 353 GLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---------------RDSVSWNSLVASHVQDEKYIDALKI 417 (1004)
Q Consensus 353 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l 417 (1004)
..|...++..+..+.-....-|...=-.+.-.++|+.... .|....---|.+-++.|++.+..++
T Consensus 667 kaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERi 746 (1666)
T KOG0985|consen 667 KAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERI 746 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHH
Confidence 8888888777777776666666666556666677766653 3555666678888999998888877
Q ss_pred HHHhhh-----------cCCcCCHhhHHHHHHhhcCCCChH------------HHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001852 418 FSNMLQ-----------KQRLVNYVTFTSALAACSDPGFVV------------QGKIIHALVITMGLHDNLIVGNALVSM 474 (1004)
Q Consensus 418 ~~~m~~-----------~g~~p~~~t~~~ll~a~~~~~~~~------------~a~~~~~~~~~~g~~~~~~~~~~Li~~ 474 (1004)
.++-.- ..-.+|. ..++-.|-+-+-+. .-.+++ ..+-+....+.+..+|++.
T Consensus 747 cresn~YdpErvKNfLkeAkL~Dq---lPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~y--VQkvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 747 CRESNCYDPERVKNFLKEAKLTDQ---LPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIY--VQKVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HhccccCCHHHHHHHHHhcccccc---CceEEEecccccHHHHHHHHHHhhHHHHHHHH--HhhcCCcccchhhhhhhcC
Confidence 654210 0000110 01111222222211 111111 1111222233344444432
Q ss_pred HHcc-----------CC---------------hHHHHHHHhcCC---CCCeechhhhhHHhhhCCChhHHHHHHHHHHhc
Q 001852 475 YAKS-----------GM---------------MSEAKQVFRIMP---KRDTVTWNALIGGHSEKEEPDKALKAYKRMREE 525 (1004)
Q Consensus 475 y~~~-----------g~---------------~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (1004)
=|.. |+ +.--...++... ..|+.++|+|...|..+++-.+-. .+.
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~f------Lke 895 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERF------LKE 895 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHh------ccc
Confidence 2211 11 000001111100 124455555555555444332211 111
Q ss_pred CCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcc--------cCchhHHhHHhhHHHHcCChhhHHHHH-------
Q 001852 526 GTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGF--------ESHKYVQNSLITMYAKCGDLNSSNYIF------- 590 (1004)
Q Consensus 526 g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~--------~~~~~~~~~Li~~y~k~g~~~~A~~~f------- 590 (1004)
+..-|. .++.-++.. .+.-.+-- .-+.|- -..-..+..+..-..+..+.+-=.+++
T Consensus 896 N~yYDs----~vVGkYCEK-RDP~lA~v----aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~r 966 (1666)
T KOG0985|consen 896 NPYYDS----KVVGKYCEK-RDPHLACV----AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYR 966 (1666)
T ss_pred CCcchh----hHHhhhhcc-cCCceEEE----eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHH
Confidence 100010 011111111 00000000 000110 011112222333333333333322222
Q ss_pred ----hcC-----CC-CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-hhhHHHH--------------------
Q 001852 591 ----EGL-----AE-KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFD-RFSLSEG-------------------- 639 (1004)
Q Consensus 591 ----~~~-----~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~l-------------------- 639 (1004)
++. ++ +|+..-+.-+.++...+-+.+-++++++..-.+-.-+ ...+..+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 211 11 2555566677888889999999999998764221111 1111111
Q ss_pred --------HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHh
Q 001852 640 --------LAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFAR 711 (1004)
Q Consensus 640 --------l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 711 (1004)
...+...+..++|..++... ..+....+.|++ .-++++.|.+.-++..+ +..|..+..+-.+
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQ 1116 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHh
Confidence 11222233334444443321 222222223332 33555555555554443 4579999999999
Q ss_pred cCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHH
Q 001852 712 HGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 712 ~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 791 (1004)
.|...+|++-|-+. -|...|.-++.++++.|.|++-.+++.-..++ .-+|.++. .++-+|++.+++.|-++|
T Consensus 1117 ~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHH
Confidence 99999999887543 36678999999999999999999998766654 66777664 688999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCc
Q 001852 792 INKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPA 871 (1004)
Q Consensus 792 i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 871 (1004)
+. -|+..-....+.-|...|.+|.|+-++.. .+.|..|+..+...|.+..|...-++.....+.|+.+
T Consensus 1189 i~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1189 IA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred hc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 84 47777788889999999999999888864 4567788888888888888877655555555556555
Q ss_pred ccEEE
Q 001852 872 CSWVK 876 (1004)
Q Consensus 872 ~s~i~ 876 (1004)
..+|+
T Consensus 1257 faCvd 1261 (1666)
T KOG0985|consen 1257 FACVD 1261 (1666)
T ss_pred HHHhc
Confidence 55554
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=5.6e-10 Score=115.36 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=148.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETF 722 (1004)
Q Consensus 646 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 722 (1004)
.|+++.|.+.+.......-......|| +.-.|.+.|++++|++.|-++. ..+....-.+.+.|-...+...|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 456666666665554432211111121 2224667788888888876654 356666677788888888999999999
Q ss_pred HHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC-CCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 001852 723 DEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGV-PAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN 800 (1004)
Q Consensus 723 ~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~ 800 (1004)
.+....++.|.....-|...|-+.|+-.+|.+++-.- |.. +-++++..-|...|....-+++|.+.+++. -+.|+
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 8887756668888888889999999999998865543 333 346677777777888888889999999887 57899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 801 DLVWRSLLASS-KIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 801 ~~~~~~ll~~~-~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
.+-|..++.+| +..||+..|...++.+-...|+|..-.-.|..+....|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999888887 456999999999999999999998877777777666664
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.28 E-value=5.9e-10 Score=125.10 Aligned_cols=285 Identities=12% Similarity=-0.017 Sum_probs=184.9
Q ss_pred cCChHHHHHHHhcCCCC--Ceechhhh-hHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccch
Q 001852 478 SGMMSEAKQVFRIMPKR--DTVTWNAL-IGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPI 554 (1004)
Q Consensus 478 ~g~~~~A~~~f~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i 554 (1004)
.|+++.|++.+...++. ++..+-.+ .....+.|++++|.+.|.++.+. .|+.....
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~------------------- 155 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPV------------------- 155 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHH-------------------
Confidence 47788888777765532 12222222 33336778888888888888652 33322110
Q ss_pred hhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 001852 555 HTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYF 631 (1004)
Q Consensus 555 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 631 (1004)
.......+...|+++.|...++...+. ++.....+...|.+.|++++|++++.++.+.+..+
T Consensus 156 ---------------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~ 220 (398)
T PRK10747 156 ---------------EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD 220 (398)
T ss_pred ---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Confidence 112245667778888888887776543 56677777888888888888888888888765443
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHH
Q 001852 632 DRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISV 708 (1004)
Q Consensus 632 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 708 (1004)
+.. +..+-. ..+..++....+..+.+...++++..+. .++..+..+..+
T Consensus 221 ~~~-~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 221 EEH-RAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHH-HHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 221 110000 0111122222222333444444444442 466677778888
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH
Q 001852 709 FARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 709 ~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 788 (1004)
+...|+.++|.+++++..+ .+||... .++.+....|+.+++++..++..+.+ +-+...+.++..++.+.|++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888887 3555521 23344445688888888888887643 22345677888888888999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 789 ETFINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 789 ~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
.+.++++ ...|+...+..|...+...|+.+.|...+++.+.+-
T Consensus 348 ~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 348 SLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888886 678888888888888888899999999999988864
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.28 E-value=4.8e-10 Score=125.85 Aligned_cols=271 Identities=12% Similarity=0.072 Sum_probs=204.2
Q ss_pred cCChhhHHHHHhcCCCC--C-HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHH--HHHHHHhhhhhHHHHHH
Q 001852 580 CGDLNSSNYIFEGLAEK--N-SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLS--EGLAAAAKLAVLEEGHQ 654 (1004)
Q Consensus 580 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~ 654 (1004)
.|+++.|.+.+...++. + ...+-.......+.|++++|.+.|.++.+ ..|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58999999888876654 2 23333223444788999999999999976 456654333 22446677899999999
Q ss_pred HHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCCh-----------hHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 655 LHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPR-----------LSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 655 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999888776 44678888999999999999999988887764221 133344444444555666666666
Q ss_pred HHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHH--hcCChHHHHHHHHhC-CCCCC
Q 001852 724 EMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLG--RSGRLAEAETFINKM-PVTPN 800 (1004)
Q Consensus 724 ~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~--r~g~~~eA~~~i~~m-~~~p~ 800 (1004)
+..+..+.+......+..++...|+.++|.+.+++..+ .+|+.. ++.+|+ +.|+.+++.+.+++. +..|+
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~----l~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER----LVLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH----HHHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66554555777888999999999999999999988865 344442 333333 459999999999887 55666
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 801 DL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 801 ~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
.. .+.++...|...|+.+.|+..++++++.+|++.. +..|+.++.+.|+.++|.+.+++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 6778888999999999999999999999998755 779999999999999999987753
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=4.5e-09 Score=118.74 Aligned_cols=253 Identities=12% Similarity=-0.067 Sum_probs=140.4
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh-hhHHHHHHHHhhhhh
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK----NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR-FSLSEGLAAAAKLAV 648 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 648 (1004)
...+.+.|+.+.|...|.+..+. +....-.....+.+.|++++|+..++++.+. .|+. ..+..+...+...|+
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhh
Confidence 44566678888888888775322 2223333466677788888888888888775 3533 455566667778888
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHHhhH-------HhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHH
Q 001852 649 LEEGHQLHGLATKLGFDLDPFVTNAAMDMY-------GKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKA 718 (1004)
Q Consensus 649 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 718 (1004)
++.+.+++..+.+.+..+.......-...+ ......+...+..+..+. +++..+..++..+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 888888888877776443222211111111 111222333334444442 3666677777777777777777
Q ss_pred HHHHHHHhhccCCCHhH---HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHh-
Q 001852 719 IETFDEMLKYVKPDHVT---FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINK- 794 (1004)
Q Consensus 719 ~~l~~~m~~~~~pd~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~- 794 (1004)
++.+++.++. .||... ...........++.+++.+.+++..+.+...|+.....+++.++.+.|++++|.+.+++
T Consensus 283 ~~~l~~~l~~-~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 283 QEIIFDGLKK-LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHHhh-CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 7777777774 443331 11111222334555566666655554333333223344555555555666666655552
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 795 --MPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 795 --m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
....|++.++..|...+...|+.+.|..++++.++
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455555555555555555555555555555544
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.25 E-value=1.2e-09 Score=123.44 Aligned_cols=280 Identities=11% Similarity=0.020 Sum_probs=202.4
Q ss_pred HHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh--hHHHHHHHHhhhhhHHHH
Q 001852 578 AKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF--SLSEGLAAAAKLAVLEEG 652 (1004)
Q Consensus 578 ~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a 652 (1004)
...|+++.|.+.+.+..+. ....+-.....+.+.|++++|.+.|.+..+. .|+.. .-..........|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999877654 2334444456678889999999999998764 45553 233346667789999999
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 001852 653 HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWN----ILISVFARHGYFQKAIETFDEM 725 (1004)
Q Consensus 653 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m 725 (1004)
.+.+..+.+.. +-++.+...+..+|...|++++|.+.++...+. +...+. ....++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998886 346678889999999999999999998887743 222221 1111223334444445566666
Q ss_pred hhcc----CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 001852 726 LKYV----KPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM----PV 797 (1004)
Q Consensus 726 ~~~~----~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m----~~ 797 (1004)
.+.. +.+...+..+...+...|+.++|.+.+++..+...-.+...+.....-.....++.+++.+.+++. |.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6542 237778888999999999999999999999865322222111111112223357778888888765 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 798 TPNDLVWRSLLASSKIHGNVELAKKAAE--HLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 798 ~p~~~~~~~ll~~~~~~g~~e~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
.|+.....+|.+.|...|+.+.|++.+| .+++..|++.. +..|+.++.+.|+.++|.+++++-
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4433677899999999999999999999 68888897766 669999999999999999998863
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.6e-09 Score=113.58 Aligned_cols=254 Identities=13% Similarity=0.040 Sum_probs=188.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcC
Q 001852 603 AMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCG 682 (1004)
Q Consensus 603 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 682 (1004)
.-..-+-..+++.+.+++++...+. .++....+..-|..+...|+-.+-..+-..+.+. .+..+.+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344445555666666666665543 2233333333344444455444433333333332 3456778888888888889
Q ss_pred ChhhHhhhcCCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 001852 683 EIGDVLRIAPQPVDRPR---LSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 683 ~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
+..+|++.|.+...-|. ..|-.....|+-.|..+.|+..+...-+.++-.+..+.-+..-|...+..+-|.++|.+.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999998775443 589999999999999999999999988866667777777888999999999999999998
Q ss_pred HhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 760 TTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM--P------VTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 760 ~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~------~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
. +|.| ++..+.-+.-+.-..+.+.+|...++.. + -.+ -..+|..|+.+|++.+..++|+..+++++.
T Consensus 407 ~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 407 L---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred H---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5 5555 3444444555555678888888887664 1 122 245799999999999999999999999999
Q ss_pred cCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 830 LDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 830 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
+.|.++.+|..++-+|...|+.+.|..-..+-
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999977653
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=2.6e-10 Score=118.91 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=165.9
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSAC 743 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~ 743 (1004)
....+..+...|.+.|++++|.+.|++... .+...|..+...|...|+.++|++.+++..+..+.+...+..+...+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 456677788899999999999999987653 34668888999999999999999999999885444667788889999
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001852 744 NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAK 821 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~ 821 (1004)
...|++++|..+|++..+....+.....+..+..++.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+.|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999864222233456777889999999999999999886 44454 557888888899999999999
Q ss_pred HHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 822 KAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 822 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
..+++++++.|.++..+..++.++...|++++|....+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999998888888999999999999999998887654
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.24 E-value=2.9e-11 Score=129.66 Aligned_cols=252 Identities=15% Similarity=0.170 Sum_probs=109.1
Q ss_pred HHhhHHHHcCChhhHHHHHhcC-C----CCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhh
Q 001852 572 SLITMYAKCGDLNSSNYIFEGL-A----EKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 572 ~Li~~y~k~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 646 (1004)
.+..++.+.|++++|.+++++. . ..|+..|..+.......++.++|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4567788899999999999543 2 236667777777888899999999999999876433 33445555554 688
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC-----CCChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV-----DRPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
++.++|.++.....+.. +++..+..++..|.+.|+++++.+++++.. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899988876665443 456667788899999999999999988743 35677899999999999999999999
Q ss_pred HHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 001852 722 FDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTP 799 (1004)
Q Consensus 722 ~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p 799 (1004)
+++.++. .| |......++..+...|+.+++.++++...+.. +.++..+..++.++...|+.++|...+++. ...|
T Consensus 169 ~~~al~~-~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL-DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999995 66 56778889999999999999999999988753 556667788999999999999999999987 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 800 -NDLVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 800 -~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
|+.+..++..++...|+.+.|..+.+++++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5667788999999999999999999998763
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1e-07 Score=100.12 Aligned_cols=352 Identities=10% Similarity=0.057 Sum_probs=210.1
Q ss_pred CCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhh--HHHHH
Q 001852 360 LNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVT--FTSAL 437 (1004)
Q Consensus 360 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll 437 (1004)
...|.+.+-..--.+-+.|....|+..|......-+..|.+-+.-.--..+.+.+..+ .. |...|... =-.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHHH
Confidence 3444444433334455667777787777776654444444433222212222222111 11 11111111 12233
Q ss_pred HhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCC------CeechhhhhHHhhhCCC
Q 001852 438 AACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKR------DTVTWNALIGGHSEKEE 511 (1004)
Q Consensus 438 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~ 511 (1004)
.++......+++.+-.......|++.+...-+-...++-...+++.|+.+|+++.+. |..+|+.++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 445555567777777777777788777776666666677778888888888888753 344555544 333333
Q ss_pred hhHHHHHHHHHH--hcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHH
Q 001852 512 PDKALKAYKRMR--EEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYI 589 (1004)
Q Consensus 512 ~~~A~~l~~~m~--~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 589 (1004)
.. +.++.+-. -...+|. +...+.+-|+-.++-++|...
T Consensus 313 sk--Ls~LA~~v~~idKyR~E--------------------------------------TCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPE--------------------------------------TCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred HH--HHHHHHHHHHhccCCcc--------------------------------------ceeeehhHHHHHHhHHHHHHH
Confidence 22 22222211 1223332 223445566777777888888
Q ss_pred HhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 001852 590 FEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDL 666 (1004)
Q Consensus 590 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 666 (1004)
|+...+- -...|+-|..-|....+...|++-++...+. .|-
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~---------------------------------- 396 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR---------------------------------- 396 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch----------------------------------
Confidence 8866543 4678999999999999999999888887763 221
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSAC 743 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~ 743 (1004)
|-..|-.|.++|.-.+-..-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....-..+...++.|...+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 44456666666766666666776666654 246677777777777777788888877777765333556777777888
Q ss_pred hccCCHHHHHHHHHHhHhhc---C-CCC-CCchHHHHHHHHHhcCChHHHHHHHHh
Q 001852 744 NHGGLVDKGLQYYNTMTTEF---G-VPA-GIEHCVCIIDLLGRSGRLAEAETFINK 794 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~ 794 (1004)
-+.++.++|..+|+...+.. | +.| ......-|..-+-+.+++++|......
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 88888888887777766532 1 223 223333455566677777777665443
No 52
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3e-06 Score=96.69 Aligned_cols=724 Identities=13% Similarity=0.085 Sum_probs=390.0
Q ss_pred HhhccCCCcchhhHHHHHHHccCChhHHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcccH
Q 001852 52 IKGLVSFSVFYNNTLINMYFKFGCLGYARYVFDKMGD--KNDASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTGVLI 129 (1004)
Q Consensus 52 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 129 (1004)
.+.|..||... ++....+ -..+.|..+...|++ +...-.+.+...+...+..+.+..++-.... +..|+....
T Consensus 505 kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK-~~~Pd~g~L 579 (1666)
T KOG0985|consen 505 KKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALK-LNSPDEGHL 579 (1666)
T ss_pred HHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhc-CCChhhhhH
Confidence 34555555432 3333333 455555555555443 3344566666666677777777766655543 234443322
Q ss_pred HH-HHHhhhccCcchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCCC--CchhHHHHH-----HH
Q 001852 130 SS-LLSACDWSGFMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPV--RNVVSWTSL-----MV 201 (1004)
Q Consensus 130 ~~-ll~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~l-----i~ 201 (1004)
.+ +|.--. . .+-++-+.+...+.- ..+-+..+...+.+.|-+..|++.+..+.. +.++ -+.+ +.
T Consensus 580 QTrLLE~NL-----~-~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv 651 (1666)
T KOG0985|consen 580 QTRLLEMNL-----V-HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLV 651 (1666)
T ss_pred HHHHHHHHh-----c-cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHH
Confidence 21 111100 0 122233333322211 112255677788899999999999988752 2222 2222 23
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHh-----------cCCCChhhhhHHH
Q 001852 202 AYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKF-----------GFHYTVPVANSLI 270 (1004)
Q Consensus 202 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li 270 (1004)
.|.-.-.++.+++.++.|...++.-|..+...+..-+...-..+...++|+..... ++..|+.+.-.-|
T Consensus 652 ~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYI 731 (1666)
T KOG0985|consen 652 NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYI 731 (1666)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHH
Confidence 45555678899999999999988888777666655555443333333444333221 3556677777889
Q ss_pred HHhhCCCCHHHHHHHHhhCCC-------------------C-----Cc-------chH------HHHHHHHHhCCCchhH
Q 001852 271 SMFGNFGSVKEARCIFDSMHV-------------------R-----DT-------ISW------NSMISVYSHSGLCDQS 313 (1004)
Q Consensus 271 ~~~~~~g~~~~A~~~f~~m~~-------------------~-----d~-------~~~------~~li~~~~~~g~~~~A 313 (1004)
.+-++.|.+.+.+++-++-.. | |. +.| --.|..|.+.-++...
T Consensus 732 qAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~ 811 (1666)
T KOG0985|consen 732 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRT 811 (1666)
T ss_pred HHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCccc
Confidence 999999999999888765420 1 11 111 1123334433333322
Q ss_pred HHHHHHHHHcCCCCChhhHH------------HHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChh
Q 001852 314 LKCFHWMRHVGQEINSTTFS------------TLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSE 381 (1004)
Q Consensus 314 ~~l~~~m~~~g~~p~~~t~~------------~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 381 (1004)
-.+...+...... ..+.-+ -+..-+-+..+++.-...++..+..|. .|+.++|+|...|...++-.
T Consensus 812 p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnP 889 (1666)
T KOG0985|consen 812 PQVVGALLDVDCS-EDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNP 889 (1666)
T ss_pred chhhhhhhcCCCc-HHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCCh
Confidence 2222222221111 011111 122223344555555566666777774 48889999998887765433
Q ss_pred hHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhh-------------------hcC-CcCCHhhHHHHHHhhc
Q 001852 382 DAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNML-------------------QKQ-RLVNYVTFTSALAACS 441 (1004)
Q Consensus 382 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-------------------~~g-~~p~~~t~~~ll~a~~ 441 (1004)
+ +.+.+ |..-=+..+.-||...++.-|.-.|++-. +-- -+.|...|..+|.
T Consensus 890 E--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~--- 960 (1666)
T KOG0985|consen 890 E--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN--- 960 (1666)
T ss_pred H--Hhccc----CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh---
Confidence 2 11111 11111112223333322222211111100 000 0123333333332
Q ss_pred CCCChHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHccCChHHHHHHHhcCC-CCCeech-----hhhhHHhhhCCChh
Q 001852 442 DPGFVVQGKIIHALVITMGLH--DNLIVGNALVSMYAKSGMMSEAKQVFRIMP-KRDTVTW-----NALIGGHSEKEEPD 513 (1004)
Q Consensus 442 ~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-~~~~~~~-----~~li~~~~~~g~~~ 513 (1004)
..-..-+++.+..+..+++ .|+.-.+.-+.++...+-..+-.++++.+. ++++.+= |.||-.-. .-+..
T Consensus 961 --e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~t 1037 (1666)
T KOG0985|consen 961 --EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRT 1037 (1666)
T ss_pred --ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChH
Confidence 1112234555666655543 345555666777777777777777777765 3333322 22222222 23344
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC
Q 001852 514 KALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL 593 (1004)
Q Consensus 514 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 593 (1004)
...+..+++-.-. .|+.... +... +..+++-.++.. +..+....+.||+ .-+.++.|.+.-++.
T Consensus 1038 rVm~YI~rLdnyD-a~~ia~i------ai~~-~LyEEAF~ifkk-----f~~n~~A~~VLie---~i~~ldRA~efAe~~ 1101 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYD-APDIAEI------AIEN-QLYEEAFAIFKK-----FDMNVSAIQVLIE---NIGSLDRAYEFAERC 1101 (1666)
T ss_pred HHHHHHHHhccCC-chhHHHH------Hhhh-hHHHHHHHHHHH-----hcccHHHHHHHHH---HhhhHHHHHHHHHhh
Confidence 4555555543321 1111110 0000 222333333222 2233333334433 346777777777766
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhH
Q 001852 594 AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNA 673 (1004)
Q Consensus 594 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 673 (1004)
.+ +..|+.+..+-.+.|...+|++-|-+. -|...|..++.++++.|.+++-..++.++.+..-+|.+ -+.
T Consensus 1102 n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~e 1171 (1666)
T KOG0985|consen 1102 NE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSE 1171 (1666)
T ss_pred CC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHH
Confidence 54 457999999999999999999988653 35678999999999999999999999999888777654 457
Q ss_pred HHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHH
Q 001852 674 AMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGL 753 (1004)
Q Consensus 674 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 753 (1004)
|+-+|+|.+++.+-.+.+. .||+.-......-|-..|.++.|.-+|... ..|.-|.+.+.+.|.+.-|.
T Consensus 1172 Li~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH
Confidence 8888888888777665543 344444555556666666666665555432 23555666666666666665
Q ss_pred HHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 754 QYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
..-++. .+..+|.-+..++...+.+.-|.- ....+--.+.-..-|+.-|...|-+|+-+..+|..+.++--
T Consensus 1241 D~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQi--CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1241 DAARKA-------NSTKTWKEVCFACVDKEEFRLAQI--CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred HHhhhc-------cchhHHHHHHHHHhchhhhhHHHh--cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 543332 223445555555544444433321 11112222334556677777778888888888888888888
Q ss_pred CCCCeehhhhHhhhc
Q 001852 834 DDSSYVLYSNVCAAT 848 (1004)
Q Consensus 834 ~~~~~~~l~~~y~~~ 848 (1004)
+-+.+.-|+-+|++-
T Consensus 1312 HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888777653
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.1e-08 Score=102.51 Aligned_cols=312 Identities=14% Similarity=0.112 Sum_probs=174.4
Q ss_pred hCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHH
Q 001852 508 EKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSN 587 (1004)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 587 (1004)
-++++++|.++|-+|.+. |..|| ..--+|.+.|-+.|..|.|+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~----d~~t~---------------------------------e~~ltLGnLfRsRGEvDRAI 89 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE----DPETF---------------------------------EAHLTLGNLFRSRGEVDRAI 89 (389)
T ss_pred hhcCcchHHHHHHHHHhc----Cchhh---------------------------------HHHHHHHHHHHhcchHHHHH
Confidence 357899999999999872 33333 12235667777778888888
Q ss_pred HHHhcCCCC-C------HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001852 588 YIFEGLAEK-N------SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLAT 660 (1004)
Q Consensus 588 ~~f~~~~~~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 660 (1004)
++.+.+.++ | ..+.-.|..-|...|-++.|..+|..+.+.|. --......++..|-....++.|..+-..+.
T Consensus 90 RiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 90 RIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777766543 2 23344556667777777777777777766432 122334455555555555555555555554
Q ss_pred HhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-HhHHHHH
Q 001852 661 KLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPD-HVTFVSL 739 (1004)
Q Consensus 661 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd-~~t~~~l 739 (1004)
+.+-++... -+. ..|.-+...+....+.+.|..++.+..+. .|. ...=..+
T Consensus 169 k~~~q~~~~---eIA------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~l 220 (389)
T COG2956 169 KLGGQTYRV---EIA------------------------QFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIIL 220 (389)
T ss_pred HcCCccchh---HHH------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhh-Cccceehhhhh
Confidence 443322111 001 12233344444445555555555555553 332 2222334
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVE 818 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e 818 (1004)
.......|+++.|.+.++...+. +..--.+....|..+|...|+.++...++.++ ...++...-..+..--..+.-.+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGID 299 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChH
Confidence 44555555555555555555442 22222244444555555566666666555543 33344333333333333333344
Q ss_pred HHHHHHHHHHhcCCCCCCCeehhhhHhh--hcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEec
Q 001852 819 LAKKAAEHLFELDPSDDSSYVLYSNVCA--ATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGM 886 (1004)
Q Consensus 819 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~--~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~ 886 (1004)
.|...+.+-+.-.|.--+.|-++..-.+ +.|+|.+...+-+.|....++..|.+.+-..+-+.|.|.-
T Consensus 300 ~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 300 AAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 4555555555555554444444433333 3477888888888888888999999999999999998874
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=7.3e-11 Score=88.22 Aligned_cols=50 Identities=22% Similarity=0.441 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 001852 191 RNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGL 240 (1004)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 240 (1004)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=9.5e-11 Score=87.62 Aligned_cols=50 Identities=28% Similarity=0.504 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcC
Q 001852 292 RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGS 341 (1004)
Q Consensus 292 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 341 (1004)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1e-07 Score=102.73 Aligned_cols=127 Identities=12% Similarity=0.082 Sum_probs=78.3
Q ss_pred CCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCe---echhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 001852 462 HDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDT---VTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVL 538 (1004)
Q Consensus 462 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 538 (1004)
.-+..+...-.+-+-..+++.+..++++.+.+.|+ ..+..-|..+...|+..+-..+=.+|++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------------- 307 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------------- 307 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-------------
Confidence 34445555555555566666666666666554333 23333345555555555555555555442
Q ss_pred HhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChH
Q 001852 539 GACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGE 615 (1004)
Q Consensus 539 ~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 615 (1004)
.+.....|-++..-|.-.|+.++|++.|.+...- -...|-.....|+-.|..+
T Consensus 308 ------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 308 ------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred ------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHH
Confidence 2334455667777777778888888888766543 3457888888888888888
Q ss_pred HHHHHHHHhh
Q 001852 616 EVLKLLVKMR 625 (1004)
Q Consensus 616 ~A~~l~~~m~ 625 (1004)
+|+..+...-
T Consensus 364 QAmaaY~tAa 373 (611)
T KOG1173|consen 364 QAMAAYFTAA 373 (611)
T ss_pred HHHHHHHHHH
Confidence 8877766543
No 57
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.2e-06 Score=92.14 Aligned_cols=478 Identities=12% Similarity=0.102 Sum_probs=320.0
Q ss_pred cCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHH
Q 001852 377 AGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIH 453 (1004)
Q Consensus 377 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 453 (1004)
.+++..|+.+|++... +++..|---+..=.++.....|..++++.+..-...|..-|-- +..=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHHHHHH
Confidence 3556667777776654 4566676667777777777777777777665433333333221 22223457888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC--CCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCCh
Q 001852 454 ALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP--KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNY 531 (1004)
Q Consensus 454 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 531 (1004)
..-.+ ..|+...+++.|+.-.+-..++.|+.+++... .|++.+|---..-=-++|+...|..+|....+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 87765 57888889999998888888999999888754 688888877777777788888888888776653 1223
Q ss_pred hhHHHHHHhhcCCc---chhhcccchhhhhhhhcccC-chhHHhHHhhHHHHcCChhhHHHHH--------hcCCCC---
Q 001852 532 ITFANVLGACLNPG---DLLIHGMPIHTHIVLTGFES-HKYVQNSLITMYAKCGDLNSSNYIF--------EGLAEK--- 596 (1004)
Q Consensus 532 ~t~~~ll~a~~~~~---~~~~~~~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f--------~~~~~~--- 596 (1004)
..-..++.+++.-. ...+.+.-++...+..-... ...++..+...=-+-|+........ +.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 33333344443221 34556666666666542222 2345555555555556544333322 222222
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh-------hH---HHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF-------SL---SEGLAAAAKLAVLEEGHQLHGLATKLGFDL 666 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~---~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 666 (1004)
|-.+|--.+..-...|+.+...++|++.... ++|-.. .| +..+-.-....+.+.+++++...++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 5668888888888889999999999998864 666321 11 1112222356788899999988887 4455
Q ss_pred ChhHHhHHHhhHH----hcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHH
Q 001852 667 DPFVTNAAMDMYG----KCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSL 739 (1004)
Q Consensus 667 ~~~~~~~li~~y~----k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~l 739 (1004)
..+++.-+--||+ ++.++..|.+++..... |-.-.+...|..-.+.++++..-.++++.++ ..| |-.+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FSPENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cChHhhHHHHHH
Confidence 6666666655664 78899999999987663 5666778888888899999999999999998 566 77889888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----h
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSK-----I 813 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~-----~ 813 (1004)
...=...|+.|.|..+|+-+.+...+.--...+...||.=...|.++.|..++++. ...+-..+|-++..--. .
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 88788899999999999999875333222345667788888899999999999887 34455558888765433 3
Q ss_pred cC-----------CHHHHHHHHHHHHhc----CCCCCCC--eehhhhHhhhcCCchHHHHHHHHHh
Q 001852 814 HG-----------NVELAKKAAEHLFEL----DPSDDSS--YVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 814 ~g-----------~~e~a~~~~~~~~~l----~p~~~~~--~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
.+ ++..|..+++++... +|...-. ....-|+=...|.-.+...|.++|-
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 34 677888888888773 3322111 1122234445566667777766663
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.08 E-value=7e-06 Score=92.13 Aligned_cols=213 Identities=13% Similarity=0.046 Sum_probs=117.8
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHH
Q 001852 358 LALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFT 434 (1004)
Q Consensus 358 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 434 (1004)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999998764 245679999999999999999999998876554445544433
Q ss_pred HHHH-hhc-CCCChHHHHHHHHHHHHhC--CC--CchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhh
Q 001852 435 SALA-ACS-DPGFVVQGKIIHALVITMG--LH--DNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSE 508 (1004)
Q Consensus 435 ~ll~-a~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 508 (1004)
.+.. .|. +.+.++++..+-..++... .. .....+-.+.-+|...- ....+|. -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HH
Confidence 3333 332 4566666666655555421 10 11112222222222110 0000110 01
Q ss_pred CCChhHHHHHHHHHHhcC-CCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHH
Q 001852 509 KEEPDKALKAYKRMREEG-TPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSN 587 (1004)
Q Consensus 509 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 587 (1004)
.....++++.+++-++.+ -.|+..-|.++-.|-. +.+..+.+......+.+-..+...|.-|.-.+...+++.+|.
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq~A~~---R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ---RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH---HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 111345566666655532 3344444433333222 234444444444444444445555555555556666666666
Q ss_pred HHHhcC
Q 001852 588 YIFEGL 593 (1004)
Q Consensus 588 ~~f~~~ 593 (1004)
.+.+..
T Consensus 534 ~vvd~a 539 (799)
T KOG4162|consen 534 DVVDAA 539 (799)
T ss_pred HHHHHH
Confidence 665543
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.9e-07 Score=95.10 Aligned_cols=270 Identities=10% Similarity=-0.023 Sum_probs=183.4
Q ss_pred hhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHhhhcCCCCChhhH
Q 001852 560 LTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAM---IAANALHGQGEEVLKLLVKMRHTGVYFDRFSL 636 (1004)
Q Consensus 560 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 636 (1004)
...++.|+....++.+.|...|+.++|...|++...-|+.+..+| .-.+.+.|+.++...+...+.... +-....+
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 345667888888888888899999999999987766655544443 233467788888777777765431 1112222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC--C-CChhHHHHHHHHHHhcC
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV--D-RPRLSWNILISVFARHG 713 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g 713 (1004)
..-....-...+.+.|..+-+..++.... +...+-.-..++...|+.++|.-.|.... . -+..+|..|+..|...|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 22223334455666666666555554321 22222222345667788888888887654 3 36778888888888888
Q ss_pred CHHHHHHHHHHHhhccCCCHhHHHHHH-HHHhc-cCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHH
Q 001852 714 YFQKAIETFDEMLKYVKPDHVTFVSLL-SACNH-GGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAET 790 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~ 790 (1004)
..+||.-+-+.....++.+..+...+. ..|.- ...-++|..++++-. .+.|+- .....+..++.+.|+.+++..
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 888888888877765555666666553 34433 234577888877764 456653 455667788888888888888
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 791 FINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 791 ~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
++++. ...||....+.|....+..+.+..|...+..++.++|+|
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88876 677888888888888888888888888888888888876
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=1.5e-08 Score=119.11 Aligned_cols=242 Identities=14% Similarity=0.024 Sum_probs=176.9
Q ss_pred ChHHHHHHHHHhhhcCCCCChhhHHHHH-HHHh---------hhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcC
Q 001852 613 QGEEVLKLLVKMRHTGVYFDRFSLSEGL-AAAA---------KLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCG 682 (1004)
Q Consensus 613 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 682 (1004)
..++|+.+|++..+ ..|+.......+ .++. ..++.++|...+..+++.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 34677777777765 456543322222 2222 2234677888877777664 236677888888999999
Q ss_pred ChhhHhhhcCCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hHHHHHHHHHhccCCHHHHHHHHHH
Q 001852 683 EIGDVLRIAPQPVD--R-PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH-VTFVSLLSACNHGGLVDKGLQYYNT 758 (1004)
Q Consensus 683 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~ 758 (1004)
++++|...|++... | +...|..+...+...|+.++|+..+++.++. .|+. ..+..++.++...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999998764 3 4567888999999999999999999999984 6643 3344455567778999999999999
Q ss_pred hHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 759 MTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLV-WRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 759 m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~-~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
..+. .+|+ ...+..+..+|...|++++|.+.+.++ +..|+... ++.|...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8753 2353 455777889999999999999999887 66677554 444444555556 588888888888665555
Q ss_pred CCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 836 SSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 836 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.....+..+|+-.|+-+.+... +.+++
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 5566699999999999988888 55544
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=2.8e-07 Score=102.99 Aligned_cols=399 Identities=13% Similarity=0.065 Sum_probs=253.6
Q ss_pred hCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhh-H
Q 001852 459 MGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYIT-F 534 (1004)
Q Consensus 459 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~ 534 (1004)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|.-.|....|+.+++.-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 35667899999999999999999999999998653 3456799999999999999999999988766443454444 4
Q ss_pred HHHHHhhcCCcchhhcccchhhhhhhh--ccc--CchhHHhHHhhHHHHcC-----------ChhhHHHHHhcCCCC---
Q 001852 535 ANVLGACLNPGDLLIHGMPIHTHIVLT--GFE--SHKYVQNSLITMYAKCG-----------DLNSSNYIFEGLAEK--- 596 (1004)
Q Consensus 535 ~~ll~a~~~~~~~~~~~~~i~~~~~~~--g~~--~~~~~~~~Li~~y~k~g-----------~~~~A~~~f~~~~~~--- 596 (1004)
...-+.|....+..++|..+-..++.. +.. ..+..+-.+.-+|...- .-.++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444455666656777777766666652 111 12333444444443221 122344455544322
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCCC--------
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATK-LGFDLD-------- 667 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~-------- 667 (1004)
|+..---+.--|+..++.+.|++..++....+-.-+...+..+.-.++..+++.+|..+.+.... .|....
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33222223345677788899999999888876667777777777777888888888888766543 222110
Q ss_pred ----------hhHHhHHHhhHH------hcCChhhHhhhcCCCC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 001852 668 ----------PFVTNAAMDMYG------KCGEIGDVLRIAPQPV-----DRPRLSWNILISVFARHGYFQKAIETFDEML 726 (1004)
Q Consensus 668 ----------~~~~~~li~~y~------k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 726 (1004)
..+...+++..- ..|+-....+.+..+. ..|.++-..-+.+... -+.+.+..-.. +.
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp 634 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LP 634 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cC
Confidence 011111111111 1111111222222221 1122222222222222 11111110000 22
Q ss_pred hc-cCC--CH------hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 727 KY-VKP--DH------VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 727 ~~-~~p--d~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
.. +.| +. ..|......+...+..++|+..+.+.. ++.| ....|.-....+...|+++||.+.+...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22 333 32 245556678889999999998877775 4444 3356666778888999999999877665
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 796 PVTPNDL-VWRSLLASSKIHGNVELAKK--AAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 796 ~~~p~~~-~~~~ll~~~~~~g~~e~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
-+.|+.+ +..+|...+...|+-..|+. +...++++||.++.+|..|+.++-+.|+.++|.+-...--
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 7888855 77888888888899888888 9999999999999999999999999999999999766543
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=3.4e-06 Score=92.26 Aligned_cols=525 Identities=15% Similarity=0.194 Sum_probs=306.4
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHh
Q 001852 264 PVANSLISMFGNFGSVKEARCIFDSMHV-----RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSA 338 (1004)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 338 (1004)
.+|-.-+....+.|++...+..|++... .-...|...+.-....|-++-++.++++..+. .| ..-.--+.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 4555566666778888888888876432 13445777787777788888888888887753 23 335555666
Q ss_pred hcCCCChhhHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCC---hhhHHHHHhcCCCC--C--cchHHHHHHHH
Q 001852 339 CGSVDNLKWGRGIHGLAVKL------ALNSNVWVCNTLLAMYSEAGR---SEDAKFVFQEMSER--D--SVSWNSLVASH 405 (1004)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~m~~~--~--~~~~~~li~~~ 405 (1004)
++..+++++|.+.+..++.. ..+.+...|.-+-+..++.-+ --....+++.+..+ | -..|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 77788888888888776532 224455566666665555432 22334455555443 2 45789999999
Q ss_pred HcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHccCChHHH
Q 001852 406 VQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVI-TMGLHDNLIVGNALVSMYAKSGMMSEA 484 (1004)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~A 484 (1004)
.+.|.+++|.++|++-.+.- ....-|+.+..+++.-.....+..+- ... +.|-.-+. -+++-.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~~ 322 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLELH 322 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHHH
Confidence 99999999999998876542 22333445555544322111111111 000 00101011 112222
Q ss_pred HHHHhcCCC---------------CCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhh
Q 001852 485 KQVFRIMPK---------------RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLI 549 (1004)
Q Consensus 485 ~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 549 (1004)
..-|+.+.. .++..|..-+. ...|++.+-...|.+..+. +.|-...
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~---------------- 383 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAV---------------- 383 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCC----------------
Confidence 222332221 24445554443 2356667777777776653 3332111
Q ss_pred cccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCC-------HhHHHHHHHHHHhcCChHHHHHHHH
Q 001852 550 HGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKN-------SVTWNAMIAANALHGQGEEVLKLLV 622 (1004)
Q Consensus 550 ~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~ 622 (1004)
..-...|..+.+.|-..|+++.|+.+|++..+-+ ...|-.-...=.++.+++.|+++.+
T Consensus 384 --------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 384 --------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred --------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1122457788999999999999999999886542 2356666666678889999999888
Q ss_pred HhhhcCCCCC-----------------hhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChh
Q 001852 623 KMRHTGVYFD-----------------RFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIG 685 (1004)
Q Consensus 623 ~m~~~g~~pd-----------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 685 (1004)
......-.|. ...+...++---..|.++..+.+++.+++..+.. +.+.-...-.+....-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHH
Confidence 8764322211 1123333444445667777788888887766542 222222233345556678
Q ss_pred hHhhhcCCCCC----CCh-hHHHHHHHHHHh-cC--CHHHHHHHHHHHhhccCCCHhHHHHHHHHH--hccCCHHHHHHH
Q 001852 686 DVLRIAPQPVD----RPR-LSWNILISVFAR-HG--YFQKAIETFDEMLKYVKPDHVTFVSLLSAC--NHGGLVDKGLQY 755 (1004)
Q Consensus 686 ~A~~~~~~~~~----~~~-~~~~~li~~~~~-~g--~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~--~~~g~~~~a~~~ 755 (1004)
++.+++++... |++ ..||+.+.-+.+ .| ..+.|..+|++.++..+|...-+.-|+.|- ..-|+...|+.+
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888887663 454 478887766543 23 678899999998887667554333344332 345888888888
Q ss_pred HHHhHhhcCCCCC--CchHHHHHH----HHHh---cCChHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 001852 756 YNTMTTEFGVPAG--IEHCVCIID----LLGR---SGRLAEAETFINKMPVTPNDL---VWRSLLASSKIHGNVELAKKA 823 (1004)
Q Consensus 756 ~~~m~~~~~~~p~--~~~y~~lv~----~l~r---~g~~~eA~~~i~~m~~~p~~~---~~~~ll~~~~~~g~~e~a~~~ 823 (1004)
+++... ++++. ...|+..|. .||- .+-+++|.+. + |+.. .---+..--.+.|.++.|..+
T Consensus 609 yerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---L---p~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 609 YERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---L---PDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---C---ChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 888765 44443 244554332 2321 1223333332 2 3332 222333344567888888888
Q ss_pred HHHHHhc-CCC-CCCCeehhhhHhhhcCC
Q 001852 824 AEHLFEL-DPS-DDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 824 ~~~~~~l-~p~-~~~~~~~l~~~y~~~g~ 850 (1004)
+...-++ +|. ++..+...-+.=.+.|+
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 8888885 454 23355555555566676
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=2e-08 Score=111.90 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=114.9
Q ss_pred hHHhHHhhHHHHcCChhhHHHHHhcCCCC----------CHh-HHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCCh
Q 001852 568 YVQNSLITMYAKCGDLNSSNYIFEGLAEK----------NSV-TWNAMIAANALHGQGEEVLKLLVKMRHT---GVYFDR 633 (1004)
Q Consensus 568 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~ 633 (1004)
.+..-|..+|...|+++.|..+|+...+. .+. .-+.+...|...+++.+|..+|+++... ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455788888888888888887654322 111 2233455666667777777776666431 000111
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcC
Q 001852 634 FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHG 713 (1004)
Q Consensus 634 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 713 (1004)
+.-..+++.|..+|.+.|++++|...++.
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~-------------------- 308 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCER-------------------- 308 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHH--------------------
Confidence 01122334455556666666665554332
Q ss_pred CHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC------chHHHHHHHHHhcCChH
Q 001852 714 YFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI------EHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~y~~lv~~l~r~g~~~ 786 (1004)
|++++++......|+.. -+..+...|.+.+.+++|..++....+.+.-.|.. .+|+.|..+|-..|+++
T Consensus 309 ----Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 309 ----ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred ----HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 22222221110122211 23344445555555555555555444433311211 34555555555555555
Q ss_pred HHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCC---CeehhhhHhhhcC
Q 001852 787 EAETFINKM-------PV--TPN-DLVWRSLLASSKIHGNVELAKKAAEHLFE----LDPSDDS---SYVLYSNVCAATG 849 (1004)
Q Consensus 787 eA~~~i~~m-------~~--~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~----l~p~~~~---~~~~l~~~y~~~g 849 (1004)
||++++++. .. .+. ...++.|..+|...++.+.|.+.++.... ..|+.|+ .|-.|+-+|.+.|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 555555543 01 111 22344555555555555555555555444 2344433 3444555566666
Q ss_pred CchHHHHHHH
Q 001852 850 RWDDVENVRR 859 (1004)
Q Consensus 850 ~~~~a~~~~~ 859 (1004)
++++|.++-.
T Consensus 465 ~~e~a~~~~~ 474 (508)
T KOG1840|consen 465 NYEAAEELEE 474 (508)
T ss_pred cHHHHHHHHH
Confidence 6666665543
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.03 E-value=1.4e-05 Score=87.55 Aligned_cols=567 Identities=14% Similarity=0.137 Sum_probs=294.3
Q ss_pred CCCCCcchhhhHHHHhhcCCChhhHHHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHc-CCCCChhhHHHHH
Q 001852 157 GLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRRE-GVCCNENTFAAVI 235 (1004)
Q Consensus 157 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~ll 235 (1004)
+..|....|-.+-++ ++.+...+.+||. .|-.-+.-+.++|+.......|++.... -+.-....+...+
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 344555555555444 4666777777763 5666677777888888888887776543 3444455667777
Q ss_pred HHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCC----------cchHHHHHHHHH
Q 001852 236 TSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRD----------TISWNSMISVYS 305 (1004)
Q Consensus 236 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d----------~~~~~~li~~~~ 305 (1004)
+-....+-++.+..++...++.. +..-+--|..+++.+++++|.+.+......| -..|+-+-...+
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 77777777777777777666543 2335566677777777777777776665332 222333333222
Q ss_pred hCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHH
Q 001852 306 HSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKF 385 (1004)
Q Consensus 306 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 385 (1004)
++-+.-..+. ...+...++..-...=...|++|.+-|.+.|.++.|+.
T Consensus 222 ~~p~~~~sln--------------------------------vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 222 QNPDKVQSLN--------------------------------VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred hCcchhcccC--------------------------------HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 2221111111 11111111111111123567777777777777777777
Q ss_pred HHhcCCCC--CcchHHHHHHHHHcCC----------------C------HHHHHHHHHHhhhcCC----------cC-CH
Q 001852 386 VFQEMSER--DSVSWNSLVASHVQDE----------------K------YIDALKIFSNMLQKQR----------LV-NY 430 (1004)
Q Consensus 386 ~f~~m~~~--~~~~~~~li~~~~~~g----------------~------~~~A~~l~~~m~~~g~----------~p-~~ 430 (1004)
+|++.... .+.-++.+-.+|++-. + .+-.+.-|+.+...+. .| +.
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 77765442 2333444444443321 1 1122223333332210 01 11
Q ss_pred hhHHHHHHhhcCCCChHHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCee-------c
Q 001852 431 VTFTSALAACSDPGFVVQGKIIHALVITMG-----LHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTV-------T 498 (1004)
Q Consensus 431 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-------~ 498 (1004)
.++..-. -...|+..+-...+.+.++.= ...-...+..+.+.|-..|+++.|+.+|+...+-+-. +
T Consensus 350 ~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 1111111 122345556666677766541 1122346788899999999999999999987754333 3
Q ss_pred hhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHH
Q 001852 499 WNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYA 578 (1004)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~ 578 (1004)
|-.-...=.++.+++.|+++.++... .|.... + ...+.+..+ ...+..+..+|...++.--
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-------~~yd~~~pv-----Q~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-------EYYDNSEPV-----QARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-------hhhcCCCcH-----HHHHHHhHHHHHHHHHHHH
Confidence 43333444556777788777666543 232211 1 111111111 1112234567777888888
Q ss_pred HcCChhhHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHhhhcCCCCChh-hHHHHHHHHh---hhhhHHH
Q 001852 579 KCGDLNSSNYIFEGLAEKNSVTWNAMI---AANALHGQGEEVLKLLVKMRHTGVYFDRF-SLSEGLAAAA---KLAVLEE 651 (1004)
Q Consensus 579 k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---~~~~~~~ 651 (1004)
.+|-++....+++.+.+--+.|=..++ --+-.+..++++.+.|++-...=--|+.. .++..|..+. ....++.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 889999999999988754222222222 22345667889999988766542234432 3444444332 2234777
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 001852 652 GHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP 731 (1004)
Q Consensus 652 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p 731 (1004)
++.+|++..+ |.+|. ....+.-+|++ ---.+|-...|++++++....++|
T Consensus 569 aRdLFEqaL~-~Cpp~--~aKtiyLlYA~---------------------------lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPE--HAKTIYLLYAK---------------------------LEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHHHHh-cCCHH--HHHHHHHHHHH---------------------------HHHHhhHHHHHHHHHHHHHhcCCH
Confidence 7777777777 44332 12222222321 112345666666666665554444
Q ss_pred CH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC---chHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHH
Q 001852 732 DH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI---EHCVCIIDLLGRSGRLAEAETFINKMP--VTP--NDL 802 (1004)
Q Consensus 732 d~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~g~~~eA~~~i~~m~--~~p--~~~ 802 (1004)
.. ..|+..+.--...==+...+.+|++.++. -|+. +...-..++=.+.|.++.|..++.--. ..| +..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~ 695 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTE 695 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChH
Confidence 22 23444333111111122233444444432 1221 222234455566777777777665431 223 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 001852 803 VWRSLLASSKIHGNVELAKKA 823 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~ 823 (1004)
.|.+.=.--..|||-+.-+.+
T Consensus 696 fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 696 FWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHH
Confidence 566665556677775444444
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=4e-05 Score=84.70 Aligned_cols=542 Identities=13% Similarity=0.081 Sum_probs=257.1
Q ss_pred HHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHH
Q 001852 235 ITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSL 314 (1004)
Q Consensus 235 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 314 (1004)
+.+..+...+..|..+++.+...... ..-|.-+.+.|+..|+++.|+++|-+.. .++--|..|.++|+|++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 44455666777777777766544321 2235566777888888888888887643 3566677788888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC-C
Q 001852 315 KCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE-R 393 (1004)
Q Consensus 315 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~ 393 (1004)
++-.+.. |.......|..-..-+-..|.+.+|++++-.+- .|+ .-|.||-+.|..++..++..+-.. .
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 8765543 333344445444444556667777766653221 122 346677777777777777655321 1
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHH--------------HHHHh
Q 001852 394 DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHA--------------LVITM 459 (1004)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~--------------~~~~~ 459 (1004)
-..+.-.+..-|-..|+...|.+-|-+... |.+.+..|...+.++.|.++-. .....
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 122333444555556666666655544322 2223333333333333332211 01111
Q ss_pred CCCCchH------HHHHHHHHHHccCChHHHHHHHhcCC-CCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChh
Q 001852 460 GLHDNLI------VGNALVSMYAKSGMMSEAKQVFRIMP-KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYI 532 (1004)
Q Consensus 460 g~~~~~~------~~~~Li~~y~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 532 (1004)
|=..-+. ...+-|+..+..+.++-|.++-+-.. .+.....-.+..-+-..|++++|-+-|-+..+.+ .-.+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln--tyni 1029 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN--TYNI 1029 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc--cccc
Confidence 1100000 11222334444455555554433221 1112222223333456788888887777765532 2222
Q ss_pred hHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC-CHhHHHHHHHHHHhc
Q 001852 533 TFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALH 611 (1004)
Q Consensus 533 t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~ 611 (1004)
|+...+. ..+-...++.|-.|.. -+.|+.+..++..|.++-+.--+. -...++.-..+-...
T Consensus 1030 twcqavp------------srfd~e~ir~gnkpe~-----av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee 1092 (1636)
T KOG3616|consen 1030 TWCQAVP------------SRFDAEFIRAGNKPEE-----AVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEE 1092 (1636)
T ss_pred hhhhccc------------chhhHHHHHcCCChHH-----HHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccc
Confidence 3321111 1112233444544433 345666777777777665432211 111222222333333
Q ss_pred CChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHH----------------HHHHHHhCCCCChhHHhHHH
Q 001852 612 GQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQL----------------HGLATKLGFDLDPFVTNAAM 675 (1004)
Q Consensus 612 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~----------------~~~~~~~g~~~~~~~~~~li 675 (1004)
|++.+|..++-+. -+||.. |.-+...+.+..|..+ -....+.|-. .+..+.+-.
T Consensus 1093 ~d~~kae~fllra----nkp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqa 1162 (1636)
T KOG3616|consen 1093 GDFLKAEGFLLRA----NKPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQA 1162 (1636)
T ss_pred cchhhhhhheeec----CCCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHH
Confidence 4444444333221 122211 1111122222222211 1111222211 111122222
Q ss_pred hhHHhcCChhhHhhhcCCC---------------------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 001852 676 DMYGKCGEIGDVLRIAPQP---------------------------VDRPRLSWNILISVFARHGYFQKAIETFDEMLKY 728 (1004)
Q Consensus 676 ~~y~k~g~~~~A~~~~~~~---------------------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 728 (1004)
.-..+.|++..|...+-++ ...|.....+...++-..|.-+.|.+++--.-.
T Consensus 1163 k~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~- 1241 (1636)
T KOG3616|consen 1163 KEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL- 1241 (1636)
T ss_pred HHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh-
Confidence 2333444444444333322 122223333333444444444444443322110
Q ss_pred cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH---------------hhcCCCC---CCchHHHHHHHHHhcCChHHHHH
Q 001852 729 VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMT---------------TEFGVPA---GIEHCVCIIDLLGRSGRLAEAET 790 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~---------------~~~~~~p---~~~~y~~lv~~l~r~g~~~eA~~ 790 (1004)
-.-.+++++....|.+|.++-+... +.-|--- +++ ...-+|++...|+|++|.+
T Consensus 1242 -------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~id 1313 (1636)
T KOG3616|consen 1242 -------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAID 1313 (1636)
T ss_pred -------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHH
Confidence 0114556666666666665544331 1111100 111 2235789999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh-cCCCCCCCeehh
Q 001852 791 FINKMPVTPNDLVWRSLLASSKIH-GNVELAKKAAEHLFE-LDPSDDSSYVLY 841 (1004)
Q Consensus 791 ~i~~m~~~p~~~~~~~ll~~~~~~-g~~e~a~~~~~~~~~-l~p~~~~~~~~l 841 (1004)
..++-..+|-..-|-++-.+..+| |+...+..++++-=. -+|.|..+|-++
T Consensus 1314 tak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i 1366 (1636)
T KOG3616|consen 1314 TAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLI 1366 (1636)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHH
Confidence 988887777666666666665555 788888887776433 355555555433
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.2e-06 Score=88.73 Aligned_cols=436 Identities=14% Similarity=0.069 Sum_probs=237.6
Q ss_pred HHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHH
Q 001852 373 MYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 373 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 449 (1004)
.|.+.|++++|..++..+.+ ++...|-.+.-.+.-.|.+.+|..+-.+.. -+......++...-+.++-+.-
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHH
Confidence 44455555555555554433 233444444444444555555555443321 1222333344444455666666
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCC--CCCeechhhhh-HHhhhCCChhHHHHHHHHHHhcC
Q 001852 450 KIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMP--KRDTVTWNALI-GGHSEKEEPDKALKAYKRMREEG 526 (1004)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g 526 (1004)
..+|..+... ..---+|..+.-..-.+.+|.+++.++. .|+....|.-+ -.|.+...++-+.++++--.+.
T Consensus 141 ~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 141 LTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 6666655432 1222234444444456788888888776 34444555433 3566777777777777665552
Q ss_pred CCCChhhHHHHHHhhcCCcchh--hcccchhhhhhhhcccCchhHHhHHhhHHHHc-----CChhhHHHHHhcCCCCCHh
Q 001852 527 TPMNYITFANVLGACLNPGDLL--IHGMPIHTHIVLTGFESHKYVQNSLITMYAKC-----GDLNSSNYIFEGLAEKNSV 599 (1004)
Q Consensus 527 ~~p~~~t~~~ll~a~~~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-----g~~~~A~~~f~~~~~~~~~ 599 (1004)
-|| .|+..-|.+|..- ..+ ..+.+-...+.+.+-.. -..+.-.++. ..-+.|.+++-.+.+.-+.
T Consensus 215 -~pd-StiA~NLkacn~f-Rl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 215 -FPD-STIAKNLKACNLF-RLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred -CCC-cHHHHHHHHHHHh-hhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 344 3444444455322 100 00111111111111100 0111112221 2234555555444333333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHh-----hhhhHHHHHHHHHHHHHhCCCCChhHHhHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAA-----KLAVLEEGHQLHGLATKLGFDLDPFVTNAA 674 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 674 (1004)
+--.|+--|.+.++..+|..+.+++.- ..|-+..+-.+..+-. ....+.-|.+.+..+-..+.+-|..
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI----- 359 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI----- 359 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc-----
Confidence 444566678899999999998887643 3444443333333211 1122344555555544444333321
Q ss_pred HhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
.--.+|.+.+.-..++++.+..+.....-+..|.+--..+..|.+..|.+.+|.+
T Consensus 360 -------------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 360 -------------------------PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred -------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence 1234566666666778888888887776634433333348899999999999999
Q ss_pred HHHHhHhhcCCCCCCchHH-HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 755 YYNTMTTEFGVPAGIEHCV-CIIDLLGRSGRLAEAETFINKMPVTPNDLVWR-SLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~~~y~-~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~-~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
+|-+.... .+. +...|. .+..+|.+.|+.+-|.+++-++....+..+.. -...-|++.+.+=-|-+++..+-.+||
T Consensus 415 lf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 415 LFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 99877531 222 223444 45678999999999999998886555555444 445569999999999999999888888
Q ss_pred CCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCc
Q 001852 833 SDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPA 871 (1004)
Q Consensus 833 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 871 (1004)
.. .+| .|+-.....+...+-.......|+
T Consensus 493 ~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 493 TP-ENW---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred Cc-ccc---------CCccchHHHHHHHHHcCCCCCCch
Confidence 53 322 245555566666665544444454
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.95 E-value=7.7e-08 Score=100.12 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=130.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 598 SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 598 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
...+..+...|...|++++|++.|++.... .|+. ...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHHHHH
Confidence 456777788888889999999988887653 2331 2233344445
Q ss_pred HHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC-CHhHHHHHHHHHhccCCHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKY-VKP-DHVTFVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p-d~~t~~~ll~a~~~~g~~~~a 752 (1004)
|...|++++|.+.+++... .+...|..+...+...|++++|++.|++.... ..| +...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 23456666777777788888888888887764 222 344566677777888888888
Q ss_pred HHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 753 LQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 753 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
...|++..+.. +.+...+..++.++...|++++|.+.+++. ...| +...|..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888776531 223456667778888888888888877765 2223 3445556666677778888888888877665
Q ss_pred CC
Q 001852 831 DP 832 (1004)
Q Consensus 831 ~p 832 (1004)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 44
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=1.1e-05 Score=88.94 Aligned_cols=527 Identities=14% Similarity=0.159 Sum_probs=241.6
Q ss_pred cCCChhhHHHhhccCC-CCch-hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHH
Q 001852 174 TYGHINKARRVFEEMP-VRNV-VSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFL 251 (1004)
Q Consensus 174 ~~g~~~~A~~~f~~m~-~~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 251 (1004)
..|+++.|..+++... -|+. ..|-.+...-...|+..-|.+.|. ..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfa----------------------ai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA----------------------AIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHH----------------------HHHHHHHHHHHH
Confidence 3477777777777654 3443 346666655556666555555443 335555566655
Q ss_pred HHHH-------HhcC-CCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 001852 252 GHVI-------KFGF-HYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHV 323 (1004)
Q Consensus 252 ~~~~-------~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 323 (1004)
+... +.|- ..+-+-..+++.+..+ ++.+|+.+|-+-. ++ ..-|..|....+|++|+.+-+. .
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn--~t---e~aigmy~~lhkwde~i~lae~---~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN--AT---EEAIGMYQELHKWDEAIALAEA---K 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc--cH---HHHHHHHHHHHhHHHHHHHHHh---c
Confidence 5432 1221 1222333444444433 5677777765422 11 2334555566667776665432 1
Q ss_pred CCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCC--CCCcchHHHH
Q 001852 324 GQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS--ERDSVSWNSL 401 (1004)
Q Consensus 324 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~l 401 (1004)
|.+.-...-.+-++++...|+-+.|-++- .+..-.-+-|..|.+.|.+..|.+.-..-. ..|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 22211222233444555555544443321 111112345677777777766665442211 2344444455
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHH-HHHHHHHHccCC
Q 001852 402 VASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVG-NALVSMYAKSGM 480 (1004)
Q Consensus 402 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~~~g~ 480 (1004)
..++.+..-+++|-++|+++.. +.-.+..+.+-..+..|.++-+.. ++..+... .+--.-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHh
Confidence 5555555566666666665532 111111111111122222221111 11111100 111122233344
Q ss_pred hHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhh
Q 001852 481 MSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVL 560 (1004)
Q Consensus 481 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~ 560 (1004)
++.|..-|-+... .-.-|.+-.....+.+|+.+++.++.....
T Consensus 722 ~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~~-------------------------------- 764 (1636)
T KOG3616|consen 722 LDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKTA-------------------------------- 764 (1636)
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--------------------------------
Confidence 4444433322110 001122223334444444444443332110
Q ss_pred hcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH
Q 001852 561 TGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL 640 (1004)
Q Consensus 561 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 640 (1004)
..-|..+.+-|+..|+++.|.++|.+.. .++--|..|.++|++++|.++-.+..
T Consensus 765 ------s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--------------- 818 (1636)
T KOG3616|consen 765 ------SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--------------- 818 (1636)
T ss_pred ------cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc---------------
Confidence 0112334455555555555555554332 23334455555555555555544332
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIE 720 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 720 (1004)
|.+.....|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-++|..+..++
T Consensus 819 ----------------------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 819 ----------------------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIR 871 (1636)
T ss_pred ----------------------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHH
Confidence 22223333333334445556666666666655555532 455666666666666
Q ss_pred HHHHHhhccCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCC--
Q 001852 721 TFDEMLKYVKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMP-- 796 (1004)
Q Consensus 721 l~~~m~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-- 796 (1004)
+.++ ..||. .|-..+..-+...|++.+|...|-.... +..-|++|-..+.|++|..+.+.-.
T Consensus 872 lv~k----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 872 LVEK----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGA 937 (1636)
T ss_pred HHHH----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccc
Confidence 5554 23433 3445555666666777666666554432 4455666666677777776665431
Q ss_pred -CCCC-HHHHHHHHH------HHHhcCCHHHHHHH------HHHHHhc-----CCCCCCCeehhhhHhhhcCCchHHHHH
Q 001852 797 -VTPN-DLVWRSLLA------SSKIHGNVELAKKA------AEHLFEL-----DPSDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 797 -~~p~-~~~~~~ll~------~~~~~g~~e~a~~~------~~~~~~l-----~p~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
.+.. ...|.-=++ ..-+||-++.|... ++-++++ ...-+..++-++-.+...|++++|.+-
T Consensus 938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen 938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHh
Confidence 1111 123321111 12344544444432 1222221 223345677777777788888888664
Q ss_pred H
Q 001852 858 R 858 (1004)
Q Consensus 858 ~ 858 (1004)
+
T Consensus 1018 y 1018 (1636)
T KOG3616|consen 1018 Y 1018 (1636)
T ss_pred h
Confidence 3
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=3.3e-07 Score=95.19 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=151.3
Q ss_pred cCChHHHHHHHhcCCCC---CeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccch
Q 001852 478 SGMMSEAKQVFRIMPKR---DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPI 554 (1004)
Q Consensus 478 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i 554 (1004)
.|++..|+++..+-.+. ....|..-..+--+.|+.+.+-.++.+..+. .+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~------------------------- 149 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AG------------------------- 149 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CC-------------------------
Confidence 47888888877664432 2233333344455667777777777666552 11
Q ss_pred hhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 001852 555 HTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL---AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYF 631 (1004)
Q Consensus 555 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 631 (1004)
.++..+.-+........|+++.|..-.++. ..+++........+|.+.|++.+.+.++.+|.+.|+--
T Consensus 150 ---------~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 150 ---------DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred ---------CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 223334445556667788888888777655 34578888888999999999999999999999888766
Q ss_pred Ch-------hhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC--ChhHH
Q 001852 632 DR-------FSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR--PRLSW 702 (1004)
Q Consensus 632 d~-------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~ 702 (1004)
|+ .++..+++-+...+..+.-+..+....+ ....++.+..+++.-+..||+.++|.++.++..++ |..
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 54 3455555555444444443344443322 22334555555666666666666666555544332 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhc
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS 782 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 782 (1004)
-.....+.+-++...-++..++-.+..+.++-.+..|...|.+.+.|.+|..+|+... ...|+.++|+-+.+.|.+.
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQL 374 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHc
Confidence 1111222334444444444444444322233444445555555555555555555433 3344445555555555555
Q ss_pred CChHHHHHHHH
Q 001852 783 GRLAEAETFIN 793 (1004)
Q Consensus 783 g~~~eA~~~i~ 793 (1004)
|+.++|.+..+
T Consensus 375 g~~~~A~~~r~ 385 (400)
T COG3071 375 GEPEEAEQVRR 385 (400)
T ss_pred CChHHHHHHHH
Confidence 55544444443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=2.7e-08 Score=106.75 Aligned_cols=209 Identities=13% Similarity=0.065 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHHhC-CCC--ChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLG-FDL--DPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIE 720 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 720 (1004)
+..+.+..-+..++... +.| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555322 222 245577788889999999999999887663 356789999999999999999999
Q ss_pred HHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 001852 721 TFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--PV 797 (1004)
Q Consensus 721 l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~ 797 (1004)
.|++.++ +.| +..++..+..++...|++++|.+.|+...+. .|+.........++.+.++.++|.+.+.+. ..
T Consensus 120 ~~~~Al~-l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLE-LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999988 466 5678888888899999999999999988753 444322222223445678899999988654 23
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 798 TPNDLVWRSLLASSKIHGNVELAKKAAEHLF-------ELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 798 ~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.|+...|. -.....|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|....+...+
T Consensus 196 ~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34332231 222334554433 2333333 56677778899999999999999999998766544
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=5e-08 Score=93.63 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDL 778 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~ 778 (1004)
+...+.-+|.+.|+...|.+-+++.++. .| +..++..+...|...|..+.|.+.|++..+ +.|+ .+..+....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 3556778999999999999999999985 55 667899999999999999999999999864 5664 4777888888
Q ss_pred HHhcCChHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 779 LGRSGRLAEAETFINKM---PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m---~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
||..|++++|...+++. |..|. +.+|.++..+-.+.|+.+.|+..+++.++++|+++.....+++.....|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999887 44444 348888888778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 001852 855 ENVRRQMGWNKI 866 (1004)
Q Consensus 855 ~~~~~~m~~~~~ 866 (1004)
.-..+....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 988777665543
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.90 E-value=7.8e-08 Score=107.26 Aligned_cols=160 Identities=14% Similarity=0.212 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc----cCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHhhc----CCCC-CC
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKY----VKPD----HVTFVSLLSACNHGGLVDKGLQYYNTMTTEF----GVPA-GI 769 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~----~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p-~~ 769 (1004)
+.+...|...+++++|+.+|++++.. .-++ ..|+..|..+|...|++++|..+++...+.+ +..+ .+
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 35667788888888888888888754 2233 3577788889999999999999988876543 2222 22
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------
Q 001852 770 -EHCVCIIDLLGRSGRLAEAETFINKM------PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELD------- 831 (1004)
Q Consensus 770 -~~y~~lv~~l~r~g~~~eA~~~i~~m------~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~------- 831 (1004)
.-++.++.+++..+++++|..++... .+.++ +.++..|...+...|++++|+.+++++++..
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 44677888999999999999988664 12233 2489999999999999999999999999953
Q ss_pred -CCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 832 -PSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 832 -p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+.....+..|+..|...+++.+|.++...-+
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 2223356788889999999999888765443
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.1e-06 Score=93.17 Aligned_cols=187 Identities=16% Similarity=0.105 Sum_probs=134.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHHHHHHHHHhcCCHHH
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWNILISVFARHGYFQK 717 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 717 (1004)
.++....+-++..+.|....+.+. -++.+|..-.+++.-.+++++|..=|++...- ++..|-.+..+.-+.+++++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAE 446 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444332 25556666777777888899999999887653 45667777777777889999
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-------CchHHHHHHHH-HhcCChHHHH
Q 001852 718 AIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-------IEHCVCIIDLL-GRSGRLAEAE 789 (1004)
Q Consensus 718 A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~y~~lv~~l-~r~g~~~eA~ 789 (1004)
++..|++..+.++.-...|+....++...+++++|.+.|+..++ ++|+ +..+..-.-+. .=.+++.+|.
T Consensus 447 ~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~ 523 (606)
T KOG0547|consen 447 SMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhchhhhHHHHH
Confidence 99999999988666677888888999999999999999998874 3333 22221111111 2248899999
Q ss_pred HHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 790 TFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 790 ~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+++++. .+.|... .+.+|...-...|++++|+.++|+...+-
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999987 7777754 78888888889999999999999987764
No 74
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.87 E-value=9e-07 Score=92.01 Aligned_cols=284 Identities=11% Similarity=0.007 Sum_probs=159.2
Q ss_pred CCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHH
Q 001852 408 DEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQV 487 (1004)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 487 (1004)
.|++..|.++..+-.+.+-.| ...|.....+.-..|+.+.+.++..++.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666654443332 2334444555566677777777777766654456677777778888888888888877
Q ss_pred HhcCC---CCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhccc
Q 001852 488 FRIMP---KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFE 564 (1004)
Q Consensus 488 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~ 564 (1004)
.+... .+++.........|.+.|++.+.+.++.+|.+.|+--|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 76654 45777888888999999999999999999999886544321100
Q ss_pred CchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 001852 565 SHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLA 641 (1004)
Q Consensus 565 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 641 (1004)
...+++.+++-....+..+.-...++..+.+ ++..-.+++.-+.+.|+.++|.++..+-.+.+..|.-. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 0011222222222222223333344555432 45555666667777777777777777777766666511 122
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC--CCChhHHHHHHHHHHhcCCHHHHH
Q 001852 642 AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV--DRPRLSWNILISVFARHGYFQKAI 719 (1004)
Q Consensus 642 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 719 (1004)
.+...++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|.+.|+... .++...|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 2333333333333333322221 1233444555555555555555555555433 234444555555555555555555
Q ss_pred HHHHHHh
Q 001852 720 ETFDEML 726 (1004)
Q Consensus 720 ~l~~~m~ 726 (1004)
+.+++.+
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 5555444
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=98.87 E-value=8.3e-08 Score=112.76 Aligned_cols=209 Identities=11% Similarity=0.008 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH---------hcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCC
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG---------KCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGY 714 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 714 (1004)
+.+++|.+.+...++.... +...+..+...|. ..|++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567888888888765432 3445555555544 23457899999988764 356789999999999999
Q ss_pred HHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHH
Q 001852 715 FQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 715 ~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
+++|+..|++.++. .| +...+..+..++...|++++|...+++..+. .|.. ..+..+..++...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999985 66 5667888899999999999999999999754 4543 22333444566789999999998
Q ss_pred HhCC--CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 793 NKMP--VTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 793 ~~m~--~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
++.- ..|+.. .+..+..++...|+.++|+..++++....|.+......|+..|...| ++|....+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 8762 235443 56666666778899999999999999999988888888888888888 46666444343
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=3.1e-06 Score=94.50 Aligned_cols=402 Identities=15% Similarity=0.156 Sum_probs=240.6
Q ss_pred CCcchhhhHHH--HhhcCCChhhHHHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHc-C-------CCCChh
Q 001852 160 CDVFVGTSLLH--FYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRRE-G-------VCCNEN 229 (1004)
Q Consensus 160 ~~~~~~~~Li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g-------~~p~~~ 229 (1004)
.|..+-.++++ .|...|+.|.|.+-.+.+. +.+.|..|.+.|++..+.+-|.-.+..|... | .+-+..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 35566666664 5788899999988877764 5578999999999999998888777777542 2 112223
Q ss_pred hHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCC-CcchHHHHHHHHHhCC
Q 001852 230 TFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVR-DTISWNSMISVYSHSG 308 (1004)
Q Consensus 230 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g 308 (1004)
+-..+.-.....|.+++|+.++....+.. .|=..|-..|.+++|.++-+.-..- =..||.--..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 33333334457888999999998887753 3455677789999998886543211 1124444445555567
Q ss_pred CchhHHHHHHHH----------HHcC---------CCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHH
Q 001852 309 LCDQSLKCFHWM----------RHVG---------QEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNT 369 (1004)
Q Consensus 309 ~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 369 (1004)
+.+.|++.|++- .... -.-|...|.-.-.-+-..|+.+.|..++..... |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 777777777542 1111 112333444444445566777777777765443 456
Q ss_pred HHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCC-----
Q 001852 370 LLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPG----- 444 (1004)
Q Consensus 370 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~----- 444 (1004)
++...|-.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+.+ +|...|+.|-..+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 6777777888888888877643 55667778888999999999999998765 3444554443322
Q ss_pred ----------ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC--------------CCeechh
Q 001852 445 ----------FVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK--------------RDTVTWN 500 (1004)
Q Consensus 445 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------~~~~~~~ 500 (1004)
+.-.+..++++. |. -....+-.|-|.|.+.+|+++--+-.+ .|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 222222333221 11 122344567788888888776333221 2455555
Q ss_pred hhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhh--hhcccC---chhHHhHHhh
Q 001852 501 ALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIV--LTGFES---HKYVQNSLIT 575 (1004)
Q Consensus 501 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~--~~g~~~---~~~~~~~Li~ 575 (1004)
.-..-|+.+.++++|..++-..++ |...+..|...+ +....++-+.|. +.+..+ -..+...+.+
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n--v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN--VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC--CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 566667788889999888876654 344455554431 111111111111 111111 1244556667
Q ss_pred HHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 001852 576 MYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEE 616 (1004)
Q Consensus 576 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 616 (1004)
.+.++|.+..|-+-|.+.-.+ -.-+.++.+.|+.++
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcce
Confidence 777777777777766554432 112344555555443
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.3e-05 Score=87.42 Aligned_cols=366 Identities=16% Similarity=0.116 Sum_probs=217.5
Q ss_pred HccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHhhcCCcchhhcccch
Q 001852 476 AKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMN-YITFANVLGACLNPGDLLIHGMPI 554 (1004)
Q Consensus 476 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i 554 (1004)
-+.+..|+|...++....-|..+-..-...+-+.|++++|+.+|+.+.+.+..-- ...-..++.+-+... +.
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~-----~~-- 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ-----VQ-- 162 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh-----HH--
Confidence 3678999999999866554544544455667889999999999999988764432 222223333322220 00
Q ss_pred hhhhhhhcccC--chhHHhHHhhHHHHcCChhhHHHHHhcC--------CCCC-----Hh-----HHHHHHHHHHhcCCh
Q 001852 555 HTHIVLTGFES--HKYVQNSLITMYAKCGDLNSSNYIFEGL--------AEKN-----SV-----TWNAMIAANALHGQG 614 (1004)
Q Consensus 555 ~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~g~~ 614 (1004)
.+......| +-..+-.....+...|++.+|+++++.. .+.| .. .--.|.-.+...|+.
T Consensus 163 --~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 --LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred --HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 111111122 1122223455677899999999999877 2111 11 122345567789999
Q ss_pred HHHHHHHHHhhhcCCCCChhhHHHHH---HHHhhhhhHHH--------------HHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 615 EEVLKLLVKMRHTGVYFDRFSLSEGL---AAAAKLAVLEE--------------GHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 615 ~~A~~l~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~--------------a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
++|..++...+... .+|+....... -+...-..+-. +......+.+.. ......-++++.+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999998863 45553322221 12221111111 111111111111 1123344667777
Q ss_pred HHhcCChhhHhhhcCCCCCCC-hhHHHHHHH-HHH-hcCCHHHHHHHHHHHhhccCCCH--hHHHHHHHHHhccCCHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVDRP-RLSWNILIS-VFA-RHGYFQKAIETFDEMLKYVKPDH--VTFVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~~~pd~--~t~~~ll~a~~~~g~~~~a 752 (1004)
|. +..+.+++.-...+... .....+++. ++. +.....+|.+++.+.-+. .|+. +.....+......|+++.|
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG-HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 75 55667777777666432 233344443 332 233578888888888775 5644 3444556667889999999
Q ss_pred HHHHH--------HhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHh--------CCCCCCHH-HHHHHHHHHHhcC
Q 001852 753 LQYYN--------TMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINK--------MPVTPNDL-VWRSLLASSKIHG 815 (1004)
Q Consensus 753 ~~~~~--------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~--------m~~~p~~~-~~~~ll~~~~~~g 815 (1004)
++++. +..+ .+.. +.....++.++.+.+..+-|..++.+ ++-.+... +|.-+..--..+|
T Consensus 396 ~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 4433 2333 34566788888888876555555543 33444433 4555555556789
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
+-+.|...++++++..|.+....+-|--.|+.. +-+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999998888777777653 3445555433
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.80 E-value=3.1e-07 Score=98.65 Aligned_cols=205 Identities=7% Similarity=-0.073 Sum_probs=138.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhh
Q 001852 598 SVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDM 677 (1004)
Q Consensus 598 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 677 (1004)
...|..+...|...|+.++|...|++..+. .|+ ++..++.+...
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~----------------------------------~~~a~~~lg~~ 107 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL--RPD----------------------------------MADAYNYLGIY 107 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC----------------------------------CHHHHHHHHHH
Confidence 345666666677777777777776666552 232 45677888888
Q ss_pred HHhcCChhhHhhhcCCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 678 YGKCGEIGDVLRIAPQPVD--R-PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
|...|++++|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|..
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-DPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHccCCHHHHHH
Confidence 8899999999988888754 3 4578888999999999999999999999984 6654322222233456788999999
Q ss_pred HHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH--HHHHHh-CC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001852 755 YYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA--ETFINK-MP----VTPN-DLVWRSLLASSKIHGNVELAKKAAEH 826 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA--~~~i~~-m~----~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~ 826 (1004)
.|++... ..+|+...+ .++..+ .|+++++ .+.+.+ .+ ..|+ ..+|..|+..+...|+.+.|+..+++
T Consensus 187 ~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9977654 233433322 333333 4555443 322222 11 2222 34899999999999999999999999
Q ss_pred HHhcCCCC-CCCeehhhhH
Q 001852 827 LFELDPSD-DSSYVLYSNV 844 (1004)
Q Consensus 827 ~~~l~p~~-~~~~~~l~~~ 844 (1004)
+++++|.+ ......+..+
T Consensus 262 Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 262 ALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 99999744 3343334433
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.6e-05 Score=85.02 Aligned_cols=427 Identities=13% Similarity=0.113 Sum_probs=225.2
Q ss_pred HHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHH--HHHHHH--hcC
Q 001852 303 VYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNT--LLAMYS--EAG 378 (1004)
Q Consensus 303 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~~g 378 (1004)
-+..+|++++|.....++...+ +-|...+.+=+-+....+.++.|..+.. +.+. ..+++. +=.+|| +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHcc
Confidence 3445566666666666666544 3334455555556666666666653322 2111 011111 234444 578
Q ss_pred ChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcC-CHhhHHHHHHhhcCCCChHHHHHHHHHHH
Q 001852 379 RSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLV-NYVTFTSALAACSDPGFVVQGKIIHALVI 457 (1004)
Q Consensus 379 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 457 (1004)
..|+|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... +. ..+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHH
Confidence 89999999986665565566666677889999999999999997765432 222222222221110 11 0112
Q ss_pred HhCCCCc---hHHHHHHHHHHHccCChHHHHHHHhcC--------CCCCee----------chhhhhHHhhhCCChhHHH
Q 001852 458 TMGLHDN---LIVGNALVSMYAKSGMMSEAKQVFRIM--------PKRDTV----------TWNALIGGHSEKEEPDKAL 516 (1004)
Q Consensus 458 ~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~~A~ 516 (1004)
.....|+ ...|| ....+...|++.+|++++... ...|.. .--.|...+-..|+.++|.
T Consensus 166 ~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222221 12333 234566789999999998876 111111 1223445667789999999
Q ss_pred HHHHHHHhcCCCCChhh---HHHHHHhhcCCcchhhcc------cchhhhhhh---hcc----cCchhHHhHHhhHHHHc
Q 001852 517 KAYKRMREEGTPMNYIT---FANVLGACLNPGDLLIHG------MPIHTHIVL---TGF----ESHKYVQNSLITMYAKC 580 (1004)
Q Consensus 517 ~l~~~m~~~g~~p~~~t---~~~ll~a~~~~~~~~~~~------~~i~~~~~~---~g~----~~~~~~~~~Li~~y~k~ 580 (1004)
.++...+... .+|... +..=|.+.... ..+..+ +..+..+.+ ..+ ......-++|+.+|.
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d-~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKD-QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccc-cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999998864 334322 22222233322 222221 000000000 000 011222345555554
Q ss_pred CChhhHHHHHhcCCCCC-HhHHHHHHHHHH--hcCChHHHHHHHHHhhhcCCCCCh--hhHHHHHHHHhhhhhHHHHHHH
Q 001852 581 GDLNSSNYIFEGLAEKN-SVTWNAMIAANA--LHGQGEEVLKLLVKMRHTGVYFDR--FSLSEGLAAAAKLAVLEEGHQL 655 (1004)
Q Consensus 581 g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~ 655 (1004)
+..+.++++-...+... ...+.+++.... +...+.+|.+++.+.-+. .|+. ......+.-....|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45566777776666543 333444443322 222466677766665543 3333 2333334445667888888887
Q ss_pred HH--------HHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC------CCh----hHHHHHHHHHHhcCCHHH
Q 001852 656 HG--------LATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD------RPR----LSWNILISVFARHGYFQK 717 (1004)
Q Consensus 656 ~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~----~~~~~li~~~~~~g~~~~ 717 (1004)
+. .+.+.+. .+.+..+++.+|.+.++.+.|..++.+... ... ..|.-...--.++|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 77 3333333 344556677788888777777766665431 111 123333333345677777
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 718 AIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 718 A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
|..+++++.+..++|.-+...++.+|+.. ++++|..
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 77777776664455666666666666654 4445543
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=2.6e-06 Score=85.84 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHhhhcCCcCCH-hhHHHHHHhhcCCCChHHHHHHHHHHHHhC-CCC--chHHHHHHHHHHHccCChHH
Q 001852 408 DEKYIDALKIFSNMLQKQRLVNY-VTFTSALAACSDPGFVVQGKIIHALVITMG-LHD--NLIVGNALVSMYAKSGMMSE 483 (1004)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~~~g~~~~ 483 (1004)
+.+.++|.++|-+|.+. .|.. .+-.++-+-+.+.|.++.|.++|..+.++- +.. .....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 34566666666666552 1111 112233344555666666777766665541 111 12345567778889999999
Q ss_pred HHHHHhcCCCCC---eechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhh
Q 001852 484 AKQVFRIMPKRD---TVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVL 560 (1004)
Q Consensus 484 A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~ 560 (1004)
|+.+|..+.+.+ ......|+..|-...++++|++.-+++.+.+-++..+-..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-------------------------
Confidence 999999987633 3456678889999999999999999998866544433221
Q ss_pred hcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHH
Q 001852 561 TGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLS 637 (1004)
Q Consensus 561 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 637 (1004)
..|.-|...+.-..+.+.|..++.+..+. .+-+--.+...+...|+++.|++.++...+.+..--..+..
T Consensus 181 -------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 181 -------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 11233444444455666677766655433 23333344556667777777777777766654333333444
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 001852 638 EGLAAAAKLAVLEEGHQLHGLATK 661 (1004)
Q Consensus 638 ~ll~a~~~~~~~~~a~~~~~~~~~ 661 (1004)
.+..+|.++|+.+++...+..+.+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555555555555555554444
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=2.9e-05 Score=82.14 Aligned_cols=332 Identities=14% Similarity=0.135 Sum_probs=198.3
Q ss_pred cCchhHHhHHhhHHHHcCChhhHHHHHhcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 001852 564 ESHKYVQNSLITMYAKCGDLNSSNYIFEGL--AEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLA 641 (1004)
Q Consensus 564 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 641 (1004)
+|+...|++.|++=.+-..++.|+.+++.. ..|++.+|---..-=-++|+..-|..+|....+. --|...-..+..
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence 444555556666666666666666666654 2456666665555556666666666666665442 122222223333
Q ss_pred HHh----hhhhHHHHHHHHHHHHHhCCCCC-hhHHhHHHhhHHhcCChh---hHhhh-----cCCCCCC---ChhHHHHH
Q 001852 642 AAA----KLAVLEEGHQLHGLATKLGFDLD-PFVTNAAMDMYGKCGEIG---DVLRI-----APQPVDR---PRLSWNIL 705 (1004)
Q Consensus 642 a~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~---~A~~~-----~~~~~~~---~~~~~~~l 705 (1004)
+++ ....++.|.-++...++.-.... ...|..+.+.=-+-|+.. +++-- ++.+... |-.+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 333 34556677777777666432221 334444444434445443 33321 1222222 45677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCH--h-----HHHHHHHHH---hccCCHHHHHHHHHHhHhhcCCCCCCchHHHH
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDH--V-----TFVSLLSAC---NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCI 775 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~--~-----t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 775 (1004)
+..-...|+.+...++|++.+..++|-. . .|.-+=.+| ....+++.+.++|+...+ -|+-...+++-+
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKi 406 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKI 406 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHH
Confidence 7777777888888888888887766622 1 222121222 346778888888888765 233333444432
Q ss_pred ----HHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 776 ----IDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 776 ----v~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
.....|+.++..|.+.+-.. ..-|-+-++...+..-...++++....++++.++.+|.|..++.-.+.+=-..|+
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 22334778888888887665 6777777887777777777888888888888888888888888888888778888
Q ss_pred chHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHH
Q 001852 851 WDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEE 903 (1004)
Q Consensus 851 ~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 903 (1004)
|+.|..+.....++...-.|..-|-. -.-|-.....+..+..+|.-|-+
T Consensus 487 tdRaRaifelAi~qp~ldmpellwka----YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 487 TDRARAIFELAISQPALDMPELLWKA----YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHH----hhhhhhhcchHHHHHHHHHHHHH
Confidence 88888888877666555555554411 01122223344555566655543
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.9e-05 Score=78.09 Aligned_cols=415 Identities=11% Similarity=0.032 Sum_probs=194.2
Q ss_pred HHHhhCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhh-HHHHHHhhcCCCCh
Q 001852 270 ISMFGNFGSVKEARCIFDSMHV---RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTT-FSTLLSACGSVDNL 345 (1004)
Q Consensus 270 i~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~ 345 (1004)
...|.+.|++++|..++.-+.. ++...|--|.-.+.-.|.+.+|..+-... |+... -..++...-+.++-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 3445566666666666655432 23444444444455556666665554331 22222 22333333455666
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCC--CcchHHH-HHHHHHcCCCHHHHHHHHHHhh
Q 001852 346 KWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSER--DSVSWNS-LVASHVQDEKYIDALKIFSNML 422 (1004)
Q Consensus 346 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 422 (1004)
+.-.++|+.+...- .-.-+|.++.--.-.+.+|++++.++... +-...|. |.-+|.+..-++-+.+++.--+
T Consensus 138 k~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 66666665554321 12223333333334577888888877653 3334443 3446677777777777776665
Q ss_pred hcCCcCCHhhHHHHHHhhcCCC--ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechh
Q 001852 423 QKQRLVNYVTFTSALAACSDPG--FVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWN 500 (1004)
Q Consensus 423 ~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 500 (1004)
+. -|| .|+..=|.+|..-. +-..+.+-.+.+.+.+-..-++.--.+-+-+.-...-+.|.+++-.+.+.-+..--
T Consensus 213 ~q--~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 213 RQ--FPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred Hh--CCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 43 233 34444445543311 11222222233332221111111111111112223445566655443322222333
Q ss_pred hhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHc
Q 001852 501 ALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKC 580 (1004)
Q Consensus 501 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 580 (1004)
.|+--|.++++.++|..+.+++.- ..|-+.....+..+... .-....
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG-------------------------------Qe~gSr 336 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG-------------------------------QETGSR 336 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh-------------------------------hhcCcH
Confidence 345557888899999888877532 33433333333322111 111111
Q ss_pred CChhhHHHHHhcCCCC----CHh-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHH
Q 001852 581 GDLNSSNYIFEGLAEK----NSV-TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQL 655 (1004)
Q Consensus 581 g~~~~A~~~f~~~~~~----~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 655 (1004)
..+.-|+..|+-.-.. |++ --.+|.+.+.-..++++.+..++....
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s----------------------------- 387 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES----------------------------- 387 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 2233344444332211 111 122333333333334444443333332
Q ss_pred HHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhccCC
Q 001852 656 HGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILI-SVFARHGYFQKAIETFDEMLKYVKP 731 (1004)
Q Consensus 656 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~p 731 (1004)
.-...|.+.+ .+.++++..|...+|.++|-++.. +|-.+|.+|+ .+|.++|+.+-|.+++-++.. +.
T Consensus 388 ------YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~ 458 (557)
T KOG3785|consen 388 ------YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PS 458 (557)
T ss_pred ------HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--ch
Confidence 2222233333 245566666666666666665553 3455555543 455666777777666655431 22
Q ss_pred CHhHHHH-HHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchH
Q 001852 732 DHVTFVS-LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHC 772 (1004)
Q Consensus 732 d~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 772 (1004)
+..+..- +..-|-+.+.+=-|-+.|+.+. ...|+++.|
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 3333333 3356666666666666666554 345666554
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=94.54 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=159.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhc
Q 001852 602 NAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKC 681 (1004)
Q Consensus 602 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 681 (1004)
+.|...|.+.|-+.+|.+.|+.-+.. .|-..||.. |...|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfll-----------------------------------LskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLL-----------------------------------LSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHH-----------------------------------HHHHHHHh
Confidence 45777888888888888888877664 333334433 44455555
Q ss_pred CChhhHhhhcCCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHH
Q 001852 682 GEIGDVLRIAPQPVD--R-PRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYN 757 (1004)
Q Consensus 682 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~ 757 (1004)
.+.+.|+.+|.+..+ | |+.-...+...+-..++.++|+++++...+. .| |......+...|.-.|+.|-|+.+++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHH
Confidence 555555555555443 2 2333344556666677888888888888775 44 45556666677777888888888888
Q ss_pred HhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 758 TMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM---PVTPN--DLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 758 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m---~~~p~--~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
++.+- |+ .+++-|..+.-++.-++++|-++.-|++. ...|+ +.+|..|......-||+..|.+.++-++..+|
T Consensus 349 RiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 87763 44 23455666655556678888887777665 23355 45999999888889999999999999999999
Q ss_pred CCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 833 SDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 833 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
++...++.|+-+-+..|+.++|..+....++
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9999999999999999999999998887665
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.68 E-value=0.00077 Score=78.14 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=96.0
Q ss_pred HHhhHHhcCChhhHhhhcCCCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHh-HHHHHHHHHhccCCH
Q 001852 674 AMDMYGKCGEIGDVLRIAPQPVD-RPRLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHV-TFVSLLSACNHGGLV 749 (1004)
Q Consensus 674 li~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~-t~~~ll~a~~~~g~~ 749 (1004)
+...+...|.++.|...+..... -|..+-.+=+.. ...|+++++++.|++.+.- -..|.+ ....++.+-..++.-
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccc
Confidence 34456667788877777666542 122221111122 4568999999999999875 223433 333444555667777
Q ss_pred HHHHHHHHHhHhhcCCCCCCchHHHHHH--HH-HhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001852 750 DKGLQYYNTMTTEFGVPAGIEHCVCIID--LL-GRSGRLAEAETFINKMP----VTPNDLVWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 750 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~--~l-~r~g~~~eA~~~i~~m~----~~p~~~~~~~ll~~~~~~g~~e~a~~ 822 (1004)
+.|...+-..... -+|+....-++.- ++ ..+-...-+++-+.+.+ +.-++.....+ .+...|+-...++
T Consensus 1092 ~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~ 1167 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKK 1167 (1238)
T ss_pred hHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHH
Confidence 7787766655542 2344433333322 22 12222222223333332 11112222222 2456788999999
Q ss_pred HHHHHHhcCCCCCCCeehhhhHhhh
Q 001852 823 AAEHLFELDPSDDSSYVLYSNVCAA 847 (1004)
Q Consensus 823 ~~~~~~~l~p~~~~~~~~l~~~y~~ 847 (1004)
..++.+-..|.|+..+.+|++=|++
T Consensus 1168 ~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1168 QIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999975554
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.68 E-value=6.3e-05 Score=86.69 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhcCCCC-hhhhhHHHHHhhCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchhHHHHHHHHHH
Q 001852 247 GYLFLGHVIKFGFHYT-VPVANSLISMFGNFGSVKEARCIFDSMHV---RDTISWNSMISVYSHSGLCDQSLKCFHWMRH 322 (1004)
Q Consensus 247 a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 322 (1004)
+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .|..++......|++..+++.|+.+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3344444444444444 35678888888888888889999987654 3677888999999999999999988322211
Q ss_pred cCCCCC-hhhHHH--HHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHH
Q 001852 323 VGQEIN-STTFST--LLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWN 399 (1004)
Q Consensus 323 ~g~~p~-~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 399 (1004)
..|- .-.++. +--.+-..++...+..-++...+.. +.|...|..|..+|..+|+...|.++|++...-++.+|-
T Consensus 555 --ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 555 --KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred --hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 1111 111222 2222445566666666666665554 346778888999999999999999999887765444433
Q ss_pred HH---HHHHHcCCCHHHHHHHHHHhhh
Q 001852 400 SL---VASHVQDEKYIDALKIFSNMLQ 423 (1004)
Q Consensus 400 ~l---i~~~~~~g~~~~A~~l~~~m~~ 423 (1004)
.. ...-+..|.+.+|+..+.....
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 2234567888888888777654
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.64 E-value=3.3e-06 Score=81.44 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 679 (1004)
+...|.-+|.+.|+...|.+-+++.++. .|+ +..++..+...|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs----------------------------------~~~a~~~~A~~Yq 80 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPS----------------------------------YYLAHLVRAHYYQ 80 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHHH
Confidence 3455677888888888888888887763 332 4456677788888
Q ss_pred hcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 680 KCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 680 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
+.|..+.|.+.|++... .+-...|....-+|..|++++|...|++.... ..--..||..+...-.++|+.+.|.+
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 88999888888887653 45567888888999999999999999999987 33355688888888889999999999
Q ss_pred HHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 755 YYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+|++..+ +.|+ ......|.+..-..|++-+|..+++.. ...+......-.+..-...||.+.+.+.-.++-.+.
T Consensus 161 ~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 161 YLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999875 3443 466778889999999999999999887 344666655455555677899999999999999999
Q ss_pred CCCCCC
Q 001852 832 PSDDSS 837 (1004)
Q Consensus 832 p~~~~~ 837 (1004)
|.....
T Consensus 238 P~s~e~ 243 (250)
T COG3063 238 PYSEEY 243 (250)
T ss_pred CCcHHH
Confidence 976553
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1e-06 Score=88.35 Aligned_cols=221 Identities=13% Similarity=0.043 Sum_probs=132.4
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH-HHHhhh
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAE--KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL-AAAAKL 646 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~ 646 (1004)
.+.+..+|.+.|.+.+|.+.|++..+ +-+.+|--|-..|.+-.+++.|+.+|.+-.+ ..|-.+|+..-+ ......
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHH
Confidence 36788999999999999999997754 4677888899999999999999999999887 477777765433 355566
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
+..+++.+++..+.+... .++....++...|--.|+.|-|...+.++.. .+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777777766532 2333333444444444555555555544332 334445555445545555555555555
Q ss_pred HHhhc-cCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 724 EMLKY-VKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 724 ~m~~~-~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+.+.. -.|+. -.|..+.......|+..-|.+.|+-... ..+...+.|+.+.-+-.|.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 55544 33322 2344444444555555555555554432 11222344555544445555555555555443
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.00062 Score=76.88 Aligned_cols=568 Identities=14% Similarity=0.105 Sum_probs=278.5
Q ss_pred CCchhHHHHHHH--HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHh---------c
Q 001852 190 VRNVVSWTSLMV--AYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKF---------G 258 (1004)
Q Consensus 190 ~~~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------g 258 (1004)
.-|.+|-.+|+. -|+-.|+.+.|.+-.+.... ...|..+.+.|.+.++++-|+--++.|... -
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346666666664 46677888888887776654 356778888888888888777766655321 1
Q ss_pred CCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHh
Q 001852 259 FHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSA 338 (1004)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 338 (1004)
-.++ ..-....-.-...|.+++|+.++.+-+. |..|=.-|...|.+++|+++-+.=.+-.++ .||..-..-
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~ 867 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKY 867 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHH
Confidence 1121 2222222233455667777777766543 333444556667777777766543332222 233333333
Q ss_pred hcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHH
Q 001852 339 CGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIF 418 (1004)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 418 (1004)
+-..++.+.|.+.++.. |.. --.+.. ++. .++....+..+.+.++....| -..-+-..|+.+.|+.+|
T Consensus 868 Lear~Di~~AleyyEK~---~~h-afev~r-mL~-----e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKA---GVH-AFEVFR-MLK-----EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAALSFY 935 (1416)
T ss_pred HHhhccHHHHHHHHHhc---CCh-HHHHHH-HHH-----hChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHHHHH
Confidence 33445555555555432 111 001111 111 122333334444444433222 223334567777777777
Q ss_pred HHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeec
Q 001852 419 SNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVT 498 (1004)
Q Consensus 419 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 498 (1004)
..... |-++.+..|-.|+.++|.++-.+. -|....-.|..+|-..|++.+|..+|.+.. +
T Consensus 936 ~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----a 995 (1416)
T KOG3617|consen 936 SSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----A 995 (1416)
T ss_pred HHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----H
Confidence 76543 455666666677777777665542 244455556777777777777777776543 2
Q ss_pred hhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHH
Q 001852 499 WNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYA 578 (1004)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~ 578 (1004)
+..-|..|-.++. ++-+.-+.-|-. | .+...+-..+ .+.|.. ..--+..|-
T Consensus 996 fsnAIRlcKEnd~-~d~L~nlal~s~----~----------------~d~v~aArYy---Ee~g~~-----~~~AVmLYH 1046 (1416)
T KOG3617|consen 996 FSNAIRLCKENDM-KDRLANLALMSG----G----------------SDLVSAARYY---EELGGY-----AHKAVMLYH 1046 (1416)
T ss_pred HHHHHHHHHhcCH-HHHHHHHHhhcC----c----------------hhHHHHHHHH---HHcchh-----hhHHHHHHH
Confidence 3333333322222 111111111100 0 1111111111 111110 112345677
Q ss_pred HcCChhhHHHHHhcCCC--------------CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHh
Q 001852 579 KCGDLNSSNYIFEGLAE--------------KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAA 644 (1004)
Q Consensus 579 k~g~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 644 (1004)
|.|.+.+|+++--.-.+ .|+...+.-..-+..+.++++|..++-..++ |.-.+..|.
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCK 1117 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh
Confidence 88888877765322221 2555556666667778888888887766543 334444444
Q ss_pred hhhhHHHHHHHHHHHH--HhCCCC---ChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHH--
Q 001852 645 KLAVLEEGHQLHGLAT--KLGFDL---DPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQK-- 717 (1004)
Q Consensus 645 ~~~~~~~a~~~~~~~~--~~g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-- 717 (1004)
..+. .-..++-+.|. +.+..+ ...+...+.+.+.++|.+..|-+-|.+...+= .-+.++.+.|+.++
T Consensus 1118 ~~nv-~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl-----~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1118 NRNV-RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL-----SAMRALLKSGDTQKIR 1191 (1416)
T ss_pred cCCC-chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH-----HHHHHHHhcCCcceEE
Confidence 3321 11222222221 112111 12344556677777787777777776654320 12234445555443
Q ss_pred --------------HHHHHHHHhhc----cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHH
Q 001852 718 --------------AIETFDEMLKY----VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLL 779 (1004)
Q Consensus 718 --------------A~~l~~~m~~~----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 779 (1004)
|..+++..-=+ +-.|.+||..-..++-+.+.+=++.... .+++|...-.
T Consensus 1192 FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi-----------Eiee~q~ydK-- 1258 (1416)
T KOG3617|consen 1192 FFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI-----------EIEELQTYDK-- 1258 (1416)
T ss_pred EEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh-----------hHHHHhhhhH--
Confidence 22222211100 1123445544444444433322221111 1122221111
Q ss_pred HhcCChHHHHHHHHhCCCCCCHH-H----------HHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCC------Ceehh
Q 001852 780 GRSGRLAEAETFINKMPVTPNDL-V----------WRSLLASSKIH-GNVELAKKAAEHLFELDPSDDS------SYVLY 841 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m~~~p~~~-~----------~~~ll~~~~~~-g~~e~a~~~~~~~~~l~p~~~~------~~~~l 841 (1004)
..|-++||.+.+.+...+.+.. . +...|...+.. .|...+++-.+.+++ +|+.+. .|-+|
T Consensus 1259 -a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~l 1336 (1416)
T KOG3617|consen 1259 -AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALL 1336 (1416)
T ss_pred -HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHH
Confidence 1355666666666654332221 2 22223333332 244455555555544 454442 46677
Q ss_pred hhHhhhcCCchHHHHHHHHHhh
Q 001852 842 SNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 842 ~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
..-|....+|..|-+..+.|+.
T Consensus 1337 ie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1337 IEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred HHHHHhhhhccHHHHHHHHHhh
Confidence 8889999999999998888874
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=0.00013 Score=80.72 Aligned_cols=444 Identities=14% Similarity=0.127 Sum_probs=243.2
Q ss_pred CCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCC---CCcchHHHHHHHHHcCCCHHHHHHH
Q 001852 341 SVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSE---RDSVSWNSLVASHVQDEKYIDALKI 417 (1004)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 417 (1004)
..+++..+....+.+++ +.+....+....--.....|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44566666666666665 2222233332222234456788888877766554 3567899888888888899999999
Q ss_pred HHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcC---CCC
Q 001852 418 FSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIM---PKR 494 (1004)
Q Consensus 418 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~ 494 (1004)
|+....- .||. ..++.-|--.-+..|+++.....-... ...
T Consensus 98 y~nAl~~--~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALKI--EKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHhc--CCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9887653 3433 222222222223333333333222222 123
Q ss_pred CeechhhhhHHhhhCCChhHHHHHHHHHHhcC-CCCChhhHHHHHHhhcCCcchhhccc--chhhhh--hhhcccCchhH
Q 001852 495 DTVTWNALIGGHSEKEEPDKALKAYKRMREEG-TPMNYITFANVLGACLNPGDLLIHGM--PIHTHI--VLTGFESHKYV 569 (1004)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~--~i~~~~--~~~g~~~~~~~ 569 (1004)
....|.....++.-.|++..|..+.++..+.. -.|+...+.-...-.-...-..+.+. .....+ .+..+......
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~ 221 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF 221 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH
Confidence 45678888888888899999998888887754 34555555332222111101111111 111111 11111222233
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCCC--CHhHHHH-HHHHHHhcCChHHHH-HHHHHhhhcCCCCChhhHHHHHHHHhh
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAEK--NSVTWNA-MIAANALHGQGEEVL-KLLVKMRHTGVYFDRFSLSEGLAAAAK 645 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~ 645 (1004)
.-.-.+.+.+.+++++|..++..+..+ |.+-|.- +..++.+-.+.-+++ .+|....+. .+-.......-++....
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCc
Confidence 344456777888888888888877654 3333333 333333333444444 555554432 11111111111122222
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhH----------------HhcCChhhHhhhcCCC--CCCChhHHHH--H
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY----------------GKCGEIGDVLRIAPQP--VDRPRLSWNI--L 705 (1004)
Q Consensus 646 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----------------~k~g~~~~A~~~~~~~--~~~~~~~~~~--l 705 (1004)
..-.+....++....+.|+++ ++..+...| ...=+-.......+.- ..|....|+. +
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 222333344555566666554 222333333 2111111111111111 1244566765 5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCC
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGR 784 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 784 (1004)
+..|-..|+++.|+.+.+...+. .|..+ -|..-...+.|+|++++|..+++...+ -..||...-+--+..+.|+.+
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccc
Confidence 67778899999999999999985 66554 566667899999999999999999875 344555444344567779999
Q ss_pred hHHHHHHHHhCCCCC-C--------HHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 001852 785 LAEAETFINKMPVTP-N--------DLVWRSLL--ASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 785 ~~eA~~~i~~m~~~p-~--------~~~~~~ll--~~~~~~g~~e~a~~~~~~~~ 828 (1004)
.++|.++.....-+- + ..+|--+- .++...|++.+|.+-+-.+.
T Consensus 455 i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 999999887652111 1 23676553 34677778777765544443
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.8e-05 Score=82.26 Aligned_cols=334 Identities=14% Similarity=0.102 Sum_probs=207.7
Q ss_pred hhHHhHHhhHHHHcCChhhHHHHHhcCCCC-CHhHHHHHHHHHHhcC-ChHHH--------------HHHHHHhhhcC--
Q 001852 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAEK-NSVTWNAMIAANALHG-QGEEV--------------LKLLVKMRHTG-- 628 (1004)
Q Consensus 567 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g-~~~~A--------------~~l~~~m~~~g-- 628 (1004)
...-.-.+..|-..++-++|.....+++.. ...--|.|+.-+.++| +..++ +..+.-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 334445677788888888898888888765 3333344444333333 11122 11111112222
Q ss_pred -------------CCCChhhHHHHHHHHh--hhhhHHHHHHHHHHHHH-hCCCCChhHHhHHHhhHHhcCChhhHhhhcC
Q 001852 629 -------------VYFDRFSLSEGLAAAA--KLAVLEEGHQLHGLATK-LGFDLDPFVTNAAMDMYGKCGEIGDVLRIAP 692 (1004)
Q Consensus 629 -------------~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 692 (1004)
+.|...+...-+.+++ ..++...+.+.+..+.+ .-++.++....++.+.|...|+.++|.-.|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 2233333344444443 34555555555555543 4677788999999999999999999999999
Q ss_pred CCCCCChhHHHHH---HHHHHh----------------------------------cCCHHHHHHHHHHHhhccCC-CHh
Q 001852 693 QPVDRPRLSWNIL---ISVFAR----------------------------------HGYFQKAIETFDEMLKYVKP-DHV 734 (1004)
Q Consensus 693 ~~~~~~~~~~~~l---i~~~~~----------------------------------~g~~~~A~~l~~~m~~~~~p-d~~ 734 (1004)
+...-|+.+..+| ...+++ ..+++.|+.+-++.++ +.| +..
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r~~~ 335 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPRNHE 335 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCcccch
Confidence 8765444332222 111122 3345556666666665 355 455
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH--
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLA-- 809 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~-- 809 (1004)
.|..-..++...|++++|.-.|+..+ .+.| +.+.|-.++..|-..|++.||.-+.+.. ..-|. +.+. +|++
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L-tL~g~~ 411 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL-TLFGTL 411 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh-hhhcce
Confidence 67666778899999999999999986 4566 5699999999999999999998765442 22222 2222 3332
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEE-----
Q 001852 810 SSKIH-GNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNS----- 883 (1004)
Q Consensus 810 ~~~~~-g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~----- 883 (1004)
.|.-. .--|+|+..+++.+.++|.-.++-+.++.++...|+++++..+.+. .++..|.++.-.+-|++.+
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~----~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK----HLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH----HHhhccccHHHHHHHHHHHHhhhH
Confidence 23222 3458899999999999999999889999999999999998876432 2223344443222222100
Q ss_pred ------EecCCCCCCChHHHHHHHHHHHHHHH
Q 001852 884 ------FGMGDHSHPDTEHIYAKLEELKKMIK 909 (1004)
Q Consensus 884 ------f~~~d~~h~~~~~i~~~l~~l~~~~~ 909 (1004)
|...=+..|+.+.-.+-|+.|+++++
T Consensus 488 Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 11112345788777777888877776
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.50 E-value=0.00014 Score=82.80 Aligned_cols=424 Identities=15% Similarity=0.147 Sum_probs=228.7
Q ss_pred HHHHcCCCHHHHHHHHHHhhhcCCcCCHhhH-HHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcc---
Q 001852 403 ASHVQDEKYIDALKIFSNMLQKQRLVNYVTF-TSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKS--- 478 (1004)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--- 478 (1004)
..+...|++++|++.+.+-.. ..+|..++ ..--..+.+.|+.++|..++..+++.+. .|..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 345678999999998876432 34555444 3344456677888888888888887763 3445555555555222
Q ss_pred --CChHHHHHHHhcCCC--CCeechhhhhHHhhhCCCh-hHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccc
Q 001852 479 --GMMSEAKQVFRIMPK--RDTVTWNALIGGHSEKEEP-DKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMP 553 (1004)
Q Consensus 479 --g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 553 (1004)
.+.+...++++++.. |.......+.-.+.....+ ..+...+..+...|+++--..+..+. ... ...
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly---~d~-~K~----- 159 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLY---KDP-EKA----- 159 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH---cCh-hHH-----
Confidence 245555666666543 2222222222222222222 23444555566666544333222222 111 111
Q ss_pred hhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHH-h-cCCCCCHhHH--HHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 001852 554 IHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIF-E-GLAEKNSVTW--NAMIAANALHGQGEEVLKLLVKMRHTGV 629 (1004)
Q Consensus 554 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f-~-~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~ 629 (1004)
.+.-.++..|............- + .-..|....| .-+...|-..|++++|++..++.++.
T Consensus 160 --------------~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 160 --------------AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred --------------HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 11112222222111000000000 0 0111233345 44466677888999999998888775
Q ss_pred CCChh-hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC------h---
Q 001852 630 YFDRF-SLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP------R--- 699 (1004)
Q Consensus 630 ~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~--- 699 (1004)
.|+.+ -|..-...+-+.|++.+|.+..+...+... .|.++-+-.+..+.++|++++|.+++.....++ .
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 56544 344445577788999999888888877654 378888888899999999999998877666543 1
Q ss_pred -hHHH--HHHHHHHhcCCHHHHHHHHHHHhhc---cCCCH-------------hHHHHHHHHHhccCC-------HHHHH
Q 001852 700 -LSWN--ILISVFARHGYFQKAIETFDEMLKY---VKPDH-------------VTFVSLLSACNHGGL-------VDKGL 753 (1004)
Q Consensus 700 -~~~~--~li~~~~~~g~~~~A~~l~~~m~~~---~~pd~-------------~t~~~ll~a~~~~g~-------~~~a~ 753 (1004)
..|- .-..+|.+.|++..|++.|....+. +.-|. .+|..++.-.-+... ...|.
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai 382 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAI 382 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2453 3467889999999999888777654 33332 234444432221111 12233
Q ss_pred HHHHHhHhhcCCCCCCch-----------HHHHHHHH---HhcCChHHHHHHHH--------------hC-CCCCCHHHH
Q 001852 754 QYYNTMTTEFGVPAGIEH-----------CVCIIDLL---GRSGRLAEAETFIN--------------KM-PVTPNDLVW 804 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p~~~~-----------y~~lv~~l---~r~g~~~eA~~~i~--------------~m-~~~p~~~~~ 804 (1004)
+++-.+............ ..-+-.-. .+...-+++..--. .. |..+|....
T Consensus 383 ~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~ 462 (517)
T PF12569_consen 383 RIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL 462 (517)
T ss_pred HHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc
Confidence 444333322111100000 00000000 01111111211110 00 222222222
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHH
Q 001852 805 R-SLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVR 858 (1004)
Q Consensus 805 ~-~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 858 (1004)
+ .|+ ....=+|.|.+.++-+.+..|++...|.+--.+|...|++--|.+..
T Consensus 463 GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL 514 (517)
T PF12569_consen 463 GEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQAL 514 (517)
T ss_pred HHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHH
Confidence 1 122 22345788999999999999999999999999999999998887643
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=6.9e-06 Score=85.56 Aligned_cols=166 Identities=13% Similarity=-0.010 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chH
Q 001852 698 PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHC 772 (1004)
Q Consensus 698 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y 772 (1004)
....+..++..+...|++++|+..|++.... .|+. .++..+..++...|++++|...++.+.+.+.-.|.. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3445555566666666666666666666553 3321 244555566666666666666666665543333322 122
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHhC-CCCCCHH-HH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 001852 773 VCIIDLLGRS--------GRLAEAETFINKM-PVTPNDL-VW-----------------RSLLASSKIHGNVELAKKAAE 825 (1004)
Q Consensus 773 ~~lv~~l~r~--------g~~~eA~~~i~~m-~~~p~~~-~~-----------------~~ll~~~~~~g~~e~a~~~~~ 825 (1004)
..+..++... |+.++|.+.++++ ...|+.. .+ ..+...+...|+.+.|...++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2233333332 5566666666554 2233321 22 234455677899999999999
Q ss_pred HHHhcCCCCC---CCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 826 HLFELDPSDD---SSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 826 ~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
++++..|+++ ..+..++.+|...|++++|....+.+..+
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999987754 58889999999999999999988877653
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.4e-06 Score=82.07 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=97.8
Q ss_pred HHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-C
Q 001852 719 IETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-P 796 (1004)
Q Consensus 719 ~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~ 796 (1004)
..+|++.++ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...+++. .
T Consensus 13 ~~~~~~al~-~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS-VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH-cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 355666666 46664 55677788889999999999998864 344 5577888888999999999999999887 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhh
Q 001852 797 VTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846 (1004)
Q Consensus 797 ~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 846 (1004)
..|+ +..|..+..++...|+.+.|+..+++++++.|+++.++..++++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5554 5688888888889999999999999999999999999888777653
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=1e-05 Score=85.55 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=140.3
Q ss_pred cCChhhHHHHHh--cCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 001852 580 CGDLNSSNYIFE--GLAEK-NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLH 656 (1004)
Q Consensus 580 ~g~~~~A~~~f~--~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 656 (1004)
.|.+..+..-.+ ..... +.....-+..+|...|+++.++. +.... -.|....+..+...+.....-+....-+
T Consensus 14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 466666664443 11111 23344455667777777665443 33222 2555555544444443323333333222
Q ss_pred HHHHHhCCC-CChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhH
Q 001852 657 GLATKLGFD-LDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVT 735 (1004)
Q Consensus 657 ~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t 735 (1004)
......... .+..+......+|...|++++|++++.+. .+....-..+..|.+.++.+.|.+.++.|.+ ...|..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~~eD~~- 165 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ-IDEDSI- 165 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-CSCCHH-
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcHH-
Confidence 222222222 23344444456778889999999998876 4555556677888899999999999999886 455543
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 001852 736 FVSLLSACNH----GGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLA 809 (1004)
Q Consensus 736 ~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~ 809 (1004)
...+..++.. ...+.+|..+|+.+.+.+ .+++...+.+.-+....|+++||++++++. ...|+ +.++-+++-
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 3334444432 236888888888887643 455666777777777788888888777664 44444 335556665
Q ss_pred HHHhcCCH-HHHHHHHHHHHhcCCCC
Q 001852 810 SSKIHGNV-ELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 810 ~~~~~g~~-e~a~~~~~~~~~l~p~~ 834 (1004)
.+...|+. +.+.+...++....|++
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 55555665 66777777777777764
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.41 E-value=4.8e-06 Score=88.06 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=105.4
Q ss_pred hhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHH
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGH 653 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 653 (1004)
..+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa------------- 170 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLA------------- 170 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHH-------------
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHH-------------
Confidence 34566678888888887765 45555566778888888899898888888763 233 2222222
Q ss_pred HHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 001852 654 QLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVK 730 (1004)
Q Consensus 654 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 730 (1004)
.+++.++.-.+.+.+|..+|+++.+ +++...|.+..++...|++++|.+++.+..+..+
T Consensus 171 ------------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 171 ------------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp ------------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred ------------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 3344444444567777777777654 3556778888888899999999999888776433
Q ss_pred CCHhHHHHHHHHHhccCCH-HHHHHHHHHhHhhcC
Q 001852 731 PDHVTFVSLLSACNHGGLV-DKGLQYYNTMTTEFG 764 (1004)
Q Consensus 731 pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~ 764 (1004)
-|..|...++..+.+.|+. +.+.+++.++...++
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 3666788888888888887 667788888876533
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=4.9e-05 Score=84.90 Aligned_cols=288 Identities=11% Similarity=0.025 Sum_probs=178.2
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCC---CC--H-hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh-hHHHHHHH
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAE---KN--S-VTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF-SLSEGLAA 642 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~--~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a 642 (1004)
+..+...|...|+.+++.+.+....+ ++ . .........+...|++++|.+++++..+. .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 34455566667777776555554322 12 1 12223344567889999999999998875 45443 2221 112
Q ss_pred Hhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCH
Q 001852 643 AAK----LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYF 715 (1004)
Q Consensus 643 ~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 715 (1004)
+.. .+..+.+.+.... .....+........+...+...|++++|.+.+++... .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 222 3444444444433 1111122334445666788999999999999998764 3466788899999999999
Q ss_pred HHHHHHHHHHhhccC--CCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCc-h--HHHHHHHHHhcCChHHH
Q 001852 716 QKAIETFDEMLKYVK--PDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIE-H--CVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 716 ~~A~~l~~~m~~~~~--pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~--y~~lv~~l~r~g~~~eA 788 (1004)
++|+..+++.....+ |+. ..|..+...+...|++++|+.++++........+... . ...+...+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999999988622 332 2355678889999999999999999854211112111 1 11333444455544444
Q ss_pred HHH--H-HhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CCCCeehhhhHhhhcCCch
Q 001852 789 ETF--I-NKM-PVTPN---DLVWRSLLASSKIHGNVELAKKAAEHLFELDPS---------DDSSYVLYSNVCAATGRWD 852 (1004)
Q Consensus 789 ~~~--i-~~m-~~~p~---~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~---------~~~~~~~l~~~y~~~g~~~ 852 (1004)
..+ + ... +..|+ .....+...++...|+.+.|....+.+....-. .....++.+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 443 2 211 11121 223335566677789999999999888764322 3456678888999999999
Q ss_pred HHHHHHHHH
Q 001852 853 DVENVRRQM 861 (1004)
Q Consensus 853 ~a~~~~~~m 861 (1004)
+|.+.-...
T Consensus 325 ~A~~~L~~a 333 (355)
T cd05804 325 TALELLGPV 333 (355)
T ss_pred HHHHHHHHH
Confidence 998864443
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=1.9e-07 Score=62.48 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=24.6
Q ss_pred CCCCCcchhhhHHHHhhcCCChhhHHHhhccCC
Q 001852 157 GLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP 189 (1004)
Q Consensus 157 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 189 (1004)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=6.1e-06 Score=92.08 Aligned_cols=222 Identities=17% Similarity=0.116 Sum_probs=146.3
Q ss_pred cccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 001852 562 GFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLA 641 (1004)
Q Consensus 562 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 641 (1004)
+++|--.+...+.+.+.++|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566678889999999999999999976 4688888999999999999988888766 3455555544444
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 642 AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 642 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
...+..-+ ++|.++++....+--.+|+-. ..+.+++.++.+.
T Consensus 466 v~~d~s~y-----------------------------------EkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 VLHDPSLY-----------------------------------EKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred hccChHHH-----------------------------------HHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 44444444 444444443332211112111 1236788888888
Q ss_pred HHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CC-
Q 001852 722 FDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PV- 797 (1004)
Q Consensus 722 ~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~- 797 (1004)
|+.-.+. .| ...||..+..+..+.++++.|.+.|..... ..|+ .+.|+.+.-+|-+.|+..+|...+++. ..
T Consensus 508 le~sl~~-nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 508 LERSLEI-NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHhhc-CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8887774 44 667888888888888888888888887763 3443 366666666666666666666666554 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 798 TPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 798 ~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
.-+..+|.+..-....-|+.+.|.+++.+++++.-
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 22234666665566666666666666666666543
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=2.5e-07 Score=61.90 Aligned_cols=33 Identities=36% Similarity=0.321 Sum_probs=25.6
Q ss_pred ccCCCcchhhHHHHHHHccCChhHHHHHhcccC
Q 001852 55 LVSFSVFYNNTLINMYFKFGCLGYARYVFDKMG 87 (1004)
Q Consensus 55 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 87 (1004)
|+.||.++||+||++|||.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777888888888888888888888877774
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=5.8e-06 Score=90.02 Aligned_cols=213 Identities=16% Similarity=0.227 Sum_probs=157.1
Q ss_pred HHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHH
Q 001852 576 MYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEG 652 (1004)
Q Consensus 576 ~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 652 (1004)
-+.+.|++.+|.-.|+...++ +..+|--|....+.+++-..|+..+++.++ +.|+...
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~Nle----------------- 354 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLE----------------- 354 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHH-----------------
Confidence 356889999999999977655 567899999999999988888888888776 4554322
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 001852 653 HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPD 732 (1004)
Q Consensus 653 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd 732 (1004)
..-+|...|...|.-.+|++++++-+.. +|-
T Consensus 355 ------------------------------------------------aLmaLAVSytNeg~q~~Al~~L~~Wi~~-~p~ 385 (579)
T KOG1125|consen 355 ------------------------------------------------ALMALAVSYTNEGLQNQALKMLDKWIRN-KPK 385 (579)
T ss_pred ------------------------------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHHh-Ccc
Confidence 2233344444445555555555554332 111
Q ss_pred Hh---------HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 001852 733 HV---------TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL 802 (1004)
Q Consensus 733 ~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~ 802 (1004)
.. .+.. -....+......-.++|-.+....+..++++.+.+|.-+|--.|.++.|.+.++.+ ..+|+..
T Consensus 386 y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~ 464 (579)
T KOG1125|consen 386 YVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY 464 (579)
T ss_pred chhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence 00 0000 01122223345566777777776777788899999999999999999999999987 6788754
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHH
Q 001852 803 -VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 803 -~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
+|+-|+.....-.+.++|+.+|.++++|.|.-.-....|+-.|.-.|-++||.+-
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 8999999998889999999999999999999999999999999999999999883
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.38 E-value=7.2e-05 Score=85.05 Aligned_cols=280 Identities=15% Similarity=0.080 Sum_probs=184.1
Q ss_pred hhHHHHcCChhhHHHHHhcCCCC--CHhHH-HHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHh----h-
Q 001852 574 ITMYAKCGDLNSSNYIFEGLAEK--NSVTW-NAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAA----K- 645 (1004)
Q Consensus 574 i~~y~k~g~~~~A~~~f~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~- 645 (1004)
...+...|++++|++.+++-... |..+| ......|.+.|+.++|...|+.+... .||...|...+..|. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 34567889999999999876654 55554 45567889999999999999999985 688888887777665 1
Q ss_pred -hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChh-hHhhhcCCCCCCChh-HHHHHHHHHHhcCCHHHHHHHH
Q 001852 646 -LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIG-DVLRIAPQPVDRPRL-SWNILISVFARHGYFQKAIETF 722 (1004)
Q Consensus 646 -~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~-~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~ 722 (1004)
....+.-.++++.+...-...+..-. +.=.+..-..+. .+...+..+..+++. .++.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~r--l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRR--LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhH--hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 22466667777766554322222111 111111111121 223333444455553 4555666666555555555666
Q ss_pred HHHhhc---------------cCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCC
Q 001852 723 DEMLKY---------------VKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGR 784 (1004)
Q Consensus 723 ~~m~~~---------------~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~ 784 (1004)
...... -+|.. .++..+...|.+.|++++|+++.++.++ ..|+ ++-|..-+.+|-++|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCC
Confidence 665432 12333 2445667788899999999999998875 4676 5888899999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCCC----------eehhhhHhhhcCCch
Q 001852 785 LAEAETFINKM-PVTPNDLVWRSLLAS-SKIHGNVELAKKAAEHLFELDPSDDSS----------YVLYSNVCAATGRWD 852 (1004)
Q Consensus 785 ~~eA~~~i~~m-~~~p~~~~~~~ll~~-~~~~g~~e~a~~~~~~~~~l~p~~~~~----------~~~l~~~y~~~g~~~ 852 (1004)
+++|.+.++.. .+.+...-.++-..- +...|+++.|+..+.....-+- ++.. ..--++.|...|+|.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999887 566666555554444 4566999999999887755443 2221 123456889999999
Q ss_pred HHHHHHHHH
Q 001852 853 DVENVRRQM 861 (1004)
Q Consensus 853 ~a~~~~~~m 861 (1004)
.|.+-....
T Consensus 323 ~ALk~~~~v 331 (517)
T PF12569_consen 323 LALKRFHAV 331 (517)
T ss_pred HHHHHHHHH
Confidence 988755444
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.36 E-value=0.00032 Score=77.75 Aligned_cols=383 Identities=14% Similarity=0.123 Sum_probs=211.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC---CCeechhhhhHHhhhCCChhHHHHHH
Q 001852 443 PGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK---RDTVTWNALIGGHSEKEEPDKALKAY 519 (1004)
Q Consensus 443 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 519 (1004)
.+++..+....+.+++ +++-...+.....-.+...|+-++|......-.. ++.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4555566666666555 3333334444333445567888888888776553 35678988888888889999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCC---CC
Q 001852 520 KRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLA---EK 596 (1004)
Q Consensus 520 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~ 596 (1004)
+.... +.||.... +.-|.-.-++.|+++.....-.... ..
T Consensus 99 ~nAl~--~~~dN~qi-----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 99 RNALK--IEKDNLQI-----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHh--cCCCcHHH-----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 98877 44543322 1111111222333333322222221 22
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCChhhHHHHHH------HHhhhhhHHHHHHHHHHHHHhCCCCChh
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTG-VYFDRFSLSEGLA------AAAKLAVLEEGHQLHGLATKLGFDLDPF 669 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 669 (1004)
.-..|.....++.-.|++..|..+.++..+.. -.|+...+.-... ...+.|.++.+.+.+...... +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 45689999999999999999999999887654 2466555543332 234566666666655443322 112223
Q ss_pred HHhHHHhhHHhcCChhhHhhhcCCCCCC--ChhHHHH-HHHHHHhcCCHHHHH-HHHHHHhhccCCC-------------
Q 001852 670 VTNAAMDMYGKCGEIGDVLRIAPQPVDR--PRLSWNI-LISVFARHGYFQKAI-ETFDEMLKYVKPD------------- 732 (1004)
Q Consensus 670 ~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~-~l~~~m~~~~~pd------------- 732 (1004)
.--.-.+.+.+.|++++|..++.....+ |.+-|.- +..++.+--+.-+++ .+|....+. .|-
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLN 299 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhC
Confidence 3345577889999999999999988764 4444443 344443333333444 556555443 111
Q ss_pred --------------------HhHHHHHHHHHhccCCHH----HHHHHHHHhHhhc-------C--CCCCC--chHHHHHH
Q 001852 733 --------------------HVTFVSLLSACNHGGLVD----KGLQYYNTMTTEF-------G--VPAGI--EHCVCIID 777 (1004)
Q Consensus 733 --------------------~~t~~~ll~a~~~~g~~~----~a~~~~~~m~~~~-------~--~~p~~--~~y~~lv~ 777 (1004)
+.+|..+.+-+-.-..++ -+..+...+...- + -+|.. .++-+++.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 111222222221111111 0111111111100 0 02222 34555666
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 778 LLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
-+-+.|+++.|++.|+.. .-.|... .|.+-...+.-.|+++.|-..++++.++|-.|..+.-.-++-...+.+.++|.
T Consensus 380 h~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 666777777777777665 3334433 33333333444567777777777777777666555555556666666777777
Q ss_pred HHHHHHhhCC
Q 001852 856 NVRRQMGWNK 865 (1004)
Q Consensus 856 ~~~~~m~~~~ 865 (1004)
++-.+.-..|
T Consensus 460 ~~~skFTr~~ 469 (700)
T KOG1156|consen 460 EVLSKFTREG 469 (700)
T ss_pred HHHHHhhhcc
Confidence 7666655444
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.32 E-value=0.00021 Score=79.85 Aligned_cols=266 Identities=12% Similarity=0.054 Sum_probs=171.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCChhhHHHH-HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHh--
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGV-YFDRFSLSEG-LAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTN-- 672 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-- 672 (1004)
....|..+...+...|+.+++.+.+.+..+... .++......+ ...+...|+.+++..++..+.+... .+...+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHh
Confidence 355677777888888888888777776654321 2232222222 1234567899999999998887643 3333433
Q ss_pred -HHHhhHHhcCChhhHhhhcCCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCC
Q 001852 673 -AAMDMYGKCGEIGDVLRIAPQPVDRP---RLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 673 -~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~ 748 (1004)
.+.......|..+.+.+.++.....+ ...+..+...+...|++++|++.+++..+..+.+...+..+..++...|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 22222334566666777766533322 23445566788999999999999999999533356677888899999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCC--chHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHHHHH----HHHHHHHhcCCHHH
Q 001852 749 VDKGLQYYNTMTTEFGVPAGI--EHCVCIIDLLGRSGRLAEAETFINKM-PVTP--NDLVWR----SLLASSKIHGNVEL 819 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p--~~~~~~----~ll~~~~~~g~~e~ 819 (1004)
+++|..++++........|.. ..|..+..++...|++++|.+.+++. ...| ...... .++.-....|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999987643333333 23557889999999999999999986 2233 222211 44455566676555
Q ss_pred HHHH---HHHHHhcCCCCCCCe--ehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 820 AKKA---AEHLFELDPSDDSSY--VLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 820 a~~~---~~~~~~l~p~~~~~~--~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+.+. ........|...... ...+..+...|++++|..+.+.++.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5554 222222112211112 2556677888999999998887765
No 104
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=2.3e-05 Score=83.93 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 679 (1004)
+++.+-..+...++.++|+.++.++++ +.|+..|. |+-...++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta----------------------------------W~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV----------------------------------WHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH----------------------------------HHHHHHHHH
Confidence 444555566777888899998888876 45655432 111112222
Q ss_pred hcC-ChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCH--HHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHH
Q 001852 680 KCG-EIGDVLRIAPQPV---DRPRLSWNILISVFARHGYF--QKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 680 k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a 752 (1004)
+.| ++++++..++++. .++..+|+-....+.+.|+. ++++++++++++. .| |..+|.....++.+.|+++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHH
Confidence 223 3445555554443 23445676555555555543 6678888888874 55 677888888888888888888
Q ss_pred HHHHHHhHhhcCCCCCCchHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc----CCHHH
Q 001852 753 LQYYNTMTTEFGVPAGIEHCVCIIDLLGRS---GRL----AEAETFINKM-PVTPN-DLVWRSLLASSKIH----GNVEL 819 (1004)
Q Consensus 753 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~---g~~----~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~----g~~e~ 819 (1004)
++.++++.+.. +-+...|+....++.+. |.+ +++.+++.++ ...|+ ...|..+.+.+..+ ++...
T Consensus 162 L~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 162 LEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 88888887641 22234444444444333 323 4667777444 56665 45899998888774 34567
Q ss_pred HHHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 820 AKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
|.....++++.+|+++-+...|+.+|...
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 88999999999999999999999999863
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.32 E-value=0.00012 Score=74.56 Aligned_cols=281 Identities=11% Similarity=0.077 Sum_probs=139.8
Q ss_pred HHHHcCChhhHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHH-HHHhhhhhHHH
Q 001852 576 MYAKCGDLNSSNYIFEGLAEKNSVTWNAMI---AANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGL-AAAAKLAVLEE 651 (1004)
Q Consensus 576 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~~~~~~ 651 (1004)
.+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=|...++ .+||-..-..-- ..+.+.|.+++
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHH
Confidence 334455566666666655555555554442 345555555555555555554 355532211111 12345555566
Q ss_pred HHHHHHHHHHhCCCCCh--hHH------------hHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCC
Q 001852 652 GHQLHGLATKLGFDLDP--FVT------------NAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGY 714 (1004)
Q Consensus 652 a~~~~~~~~~~g~~~~~--~~~------------~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 714 (1004)
|..=|..+++....... .++ ...+..+.-.|+...|++....+.+ .|...+..-..+|...|.
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 65555555543321110 000 1112223344566666666555443 344555555666666666
Q ss_pred HHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC----chHHHH---H------HHHHh
Q 001852 715 FQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI----EHCVCI---I------DLLGR 781 (1004)
Q Consensus 715 ~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~l---v------~~l~r 781 (1004)
...|+.-++..-+.-.-+..++.-+...+-..|+.+.++...+... .+.|+- .+|..+ + .-..+
T Consensus 205 ~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666655554322344455555555566666666665555443 333432 112211 1 11223
Q ss_pred cCChHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 782 SGRLAEAETFINKM-PVTPND-----LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 782 ~g~~~eA~~~i~~m-~~~p~~-----~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
.++|.++.+--++. ..+|.. .+...+-.+++..|++-+|++...++++.+|+|..++.--+..|.....+++|.
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555544444332 344431 123333334455567777777777777777777666666666666666666665
Q ss_pred HHHHHH
Q 001852 856 NVRRQM 861 (1004)
Q Consensus 856 ~~~~~m 861 (1004)
.-+++.
T Consensus 362 ~dye~A 367 (504)
T KOG0624|consen 362 HDYEKA 367 (504)
T ss_pred HHHHHH
Confidence 554444
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.0011 Score=72.06 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=57.5
Q ss_pred HHhcCChhhHHHHHhcCC---CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCH-hhHHHHHHhhcCCCChHHH
Q 001852 374 YSEAGRSEDAKFVFQEMS---ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNY-VTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 374 y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a 449 (1004)
.+..|+++.|...|.+.. .+|.+.|..-..+|+..|++++|++--.+-++ +.|+. -.|+-.-.+....|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHH
Confidence 344566666666665543 23566666666667777776666655444433 34543 3455556666666677776
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHH
Q 001852 450 KIIHALVITMGLHDNLIVGNALVSMY 475 (1004)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~~~Li~~y 475 (1004)
..-|..-++.. +.+...++-|.+++
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 66666655442 33555666666666
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.25 E-value=1.7e-05 Score=79.14 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=111.0
Q ss_pred HhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
+-+|.+.|+++......+....+. ..+...++.++++..+++.++.-+.|...|..+...|...|++++|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345666676665544332211110 012235677888888888877544477888899999999999999999
Q ss_pred HHHHhHhhcCCCC-CCchHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001852 755 YYNTMTTEFGVPA-GIEHCVCIIDLL-GRSGR--LAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 755 ~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~g~--~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~ 828 (1004)
.|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|...+...|+++.|+..+++++
T Consensus 95 a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 95 AYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998865 445 457777788764 67777 48999999887 56665 4578888888889999999999999999
Q ss_pred hcCCCCCCCe
Q 001852 829 ELDPSDDSSY 838 (1004)
Q Consensus 829 ~l~p~~~~~~ 838 (1004)
+++|.++.-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998876644
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.00096 Score=72.65 Aligned_cols=237 Identities=16% Similarity=0.094 Sum_probs=144.4
Q ss_pred HhhHHHHcCChhhHHHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHH
Q 001852 573 LITMYAKCGDLNSSNYIFEGLAEK--NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLE 650 (1004)
Q Consensus 573 Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 650 (1004)
|..+..+..+++.|.+-++....- ++.-++....+|...|.+.+....-....+.|-.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-------------------- 289 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-------------------- 289 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH--------------------
Confidence 444444555555555555544322 3344555666777777766666555543332210
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 001852 651 EGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSWNILISVFARHGYFQKAIETFDEMLKY 728 (1004)
Q Consensus 651 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 728 (1004)
.+.-+..+- .....+...|.+.++.+.|+..|.+... ++.... .+....++++...+...-
T Consensus 290 -~rad~klIa--------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~- 352 (539)
T KOG0548|consen 290 -LRADYKLIA--------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------SKLKEAEKALKEAERKAY- 352 (539)
T ss_pred -HHHHHHHHH--------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh-
Confidence 000001110 0111244577777888888888877442 221111 122334444444443332
Q ss_pred cCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHH
Q 001852 729 VKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWR 805 (1004)
Q Consensus 729 ~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~ 805 (1004)
+.|+.. -.-.-.+.+.+.|++.+|+..|.+++.. .+-+...|..-.-+|.+.|.+.+|.+=.+.. .+.|+.. .|.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 566442 2333467788899999999999998763 2345678888888899999998888766554 5566644 565
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 806 SLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 806 ~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
-=+.+.+...+++.|..++++.++++|++..+-..+...+.+.
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 5566667778999999999999999999888777777777654
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.21 E-value=2e-05 Score=78.57 Aligned_cols=146 Identities=8% Similarity=0.075 Sum_probs=115.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
+..|...|+++....-.+.+. .|. . .+...+..+++...++...+ .-+.+.+.|..++.+|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~---~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA---DPL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh---Ccc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 467889999888654443322 221 0 12236677888888887765 2344668899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 786 AEAETFINKM-PVTPN-DLVWRSLLASS-KIHGN--VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 786 ~eA~~~i~~m-~~~p~-~~~~~~ll~~~-~~~g~--~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
++|.+.+++. .+.|+ ..+|..+..+. ...|+ .+.|..+++++++++|+++..+..|+..+...|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987 56665 55788887764 56677 59999999999999999999999999999999999999999998
Q ss_pred HhhC
Q 001852 861 MGWN 864 (1004)
Q Consensus 861 m~~~ 864 (1004)
+.+.
T Consensus 170 aL~l 173 (198)
T PRK10370 170 VLDL 173 (198)
T ss_pred HHhh
Confidence 8753
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=4.2e-05 Score=79.67 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=103.6
Q ss_pred hHHhHHHhhHHhcCChhhHhhhcCCCCC--CC-h---hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHh----HHHH
Q 001852 669 FVTNAAMDMYGKCGEIGDVLRIAPQPVD--RP-R---LSWNILISVFARHGYFQKAIETFDEMLKYVKPDHV----TFVS 738 (1004)
Q Consensus 669 ~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~----t~~~ 738 (1004)
..+..+...|.+.|++++|...|++... |+ . .+|..+..+|...|++++|+..|+++.+. .|+.. ++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCchHHHHHH
Confidence 3444455556666666666666665442 21 1 34555666666777777777777777664 33221 3444
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHhHhhcCCCCCCc---------------hHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 739 LLSACNHG--------GLVDKGLQYYNTMTTEFGVPAGIE---------------HCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 739 ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~---------------~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
+..++... |+.++|.+.|+.+.+.+.-.+... +...+.+.+.+.|++++|...+++.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444443 566777777777665432222110 1124677888999999999988775
Q ss_pred ----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 796 ----PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 796 ----~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
|..|. ...|..+..++...|+.+.|...++.+....|+
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44443 458899999999999999999998888766553
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.17 E-value=0.00084 Score=68.49 Aligned_cols=332 Identities=14% Similarity=0.129 Sum_probs=202.2
Q ss_pred HHHHHHccCChHHHHHHHhcCCCCCeechhhhh---HHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcch
Q 001852 471 LVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALI---GGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDL 547 (1004)
Q Consensus 471 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 547 (1004)
|-..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.-+.+.++ .+||-..-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR------------ 109 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR------------ 109 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH------------
Confidence 445566678888898888888877887777765 357778888888888887776 456533210
Q ss_pred hhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 001852 548 LIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHT 627 (1004)
Q Consensus 548 ~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 627 (1004)
+. -...+.|.|.++.|..-|+.+.+.++.- +.-..++.+ +.+.+++.
T Consensus 110 -----------iQ------------Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~-- 156 (504)
T KOG0624|consen 110 -----------IQ------------RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW-- 156 (504)
T ss_pred -----------HH------------hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH--
Confidence 00 1123467888888888888776542210 000001111 01111111
Q ss_pred CCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCC---CCCChhHHHH
Q 001852 628 GVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQP---VDRPRLSWNI 704 (1004)
Q Consensus 628 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~---~~~~~~~~~~ 704 (1004)
.....+......|+...+......+++-. +.|...+..-.+.|...|++..|+.=+... ...+....--
T Consensus 157 -------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 157 -------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred -------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 11122222333444445555544444432 346666666677777777777776554433 3445555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCHhH-HHH---H---------HHHHhccCCHHHHHHHHHHhHhhcCCCCC---
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKPDHVT-FVS---L---------LSACNHGGLVDKGLQYYNTMTTEFGVPAG--- 768 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t-~~~---l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--- 768 (1004)
+-..+-..|+.+.++...++.++ +.||+-. |.. | .......+.|.++++..++..+ .+|.
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLK-ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ 304 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLK-LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETM 304 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccc
Confidence 66666777888888887777777 5776632 111 1 1123455667777776666544 2343
Q ss_pred --CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhH
Q 001852 769 --IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNV 844 (1004)
Q Consensus 769 --~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~ 844 (1004)
...+..+-.++...|++.||....++. .+.|| +.++.--..++...-.++.|+.-++++.+++|+|..+-.
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re----- 379 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE----- 379 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH-----
Confidence 233444566778899999999988876 67787 558877888888889999999999999999998855322
Q ss_pred hhhcCCchHHHHHHHHHhhCCCccCCc
Q 001852 845 CAATGRWDDVENVRRQMGWNKIKKKPA 871 (1004)
Q Consensus 845 y~~~g~~~~a~~~~~~m~~~~~~k~~g 871 (1004)
-.+.|.++.+.-..+..-|.-|
T Consensus 380 -----Gle~Akrlkkqs~kRDYYKILG 401 (504)
T KOG0624|consen 380 -----GLERAKRLKKQSGKRDYYKILG 401 (504)
T ss_pred -----HHHHHHHHHHHhccchHHHHhh
Confidence 2345666666555444444333
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=2.7e-05 Score=91.89 Aligned_cols=186 Identities=11% Similarity=0.099 Sum_probs=138.4
Q ss_pred hhhHHHHHH-HHhhhhhHHHH-HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC------CCChhHHHH
Q 001852 633 RFSLSEGLA-AAAKLAVLEEG-HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV------DRPRLSWNI 704 (1004)
Q Consensus 633 ~~t~~~ll~-a~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~------~~~~~~~~~ 704 (1004)
..|...++. +.+..|.-+++ .++|.++ -+...+.|.+..+.+-+-+.. ..++..+-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQA---------------RQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHH---------------HHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 345555555 45666665554 4455443 234445555555444333322 134677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhc
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKPD-HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRS 782 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~ 782 (1004)
|.....+.|..++|+.+++...+ +.|| ...+..+..++.+.+++++|+..+++... ..|+ ..+...+..++...
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~-~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ-RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHh
Confidence 88888999999999999999999 5785 45778888999999999999999998864 4564 47788889999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 783 GRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 783 g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
|+++||.+.+++. .-.|+ ..+|-++..++...|+.+.|..+++++++...+-+..
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999987 24444 6689999999999999999999999999987655443
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.12 E-value=1.9e-05 Score=72.91 Aligned_cols=118 Identities=8% Similarity=-0.047 Sum_probs=95.1
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhh
Q 001852 769 IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846 (1004)
Q Consensus 769 ~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 846 (1004)
.+..-.+...+...|++++|.++++.. ...|. ..-|..|..+|+..|+++.|+.++.+++.++|+||.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445667788899999999999887 45665 4589999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 001852 847 ATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELKKMIK 909 (1004)
Q Consensus 847 ~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 909 (1004)
..|+.++|.+-.+...... + .||+-.+|..+-+.+...+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 9999999999776544311 1 45777777776666655543
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.10 E-value=0.0064 Score=77.32 Aligned_cols=360 Identities=9% Similarity=-0.071 Sum_probs=191.2
Q ss_pred HHHHhcCChhhHHHHHhcCCCCCcch--HHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHH
Q 001852 372 AMYSEAGRSEDAKFVFQEMSERDSVS--WNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQG 449 (1004)
Q Consensus 372 ~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 449 (1004)
..|...|++.+|..........+... ...........|+...+...+..+.......+..........+...++.+.+
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34555666666666555554432111 1111223445667776666666553221111111112222233456777777
Q ss_pred HHHHHHHHHhCC------CCc--hHHHHHHHHHHHccCChHHHHHHHhcCCC----CCe----echhhhhHHhhhCCChh
Q 001852 450 KIIHALVITMGL------HDN--LIVGNALVSMYAKSGMMSEAKQVFRIMPK----RDT----VTWNALIGGHSEKEEPD 513 (1004)
Q Consensus 450 ~~~~~~~~~~g~------~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~ 513 (1004)
..........-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 777766544310 011 11222233455677888888887766431 121 23344555567788888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcC
Q 001852 514 KALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGL 593 (1004)
Q Consensus 514 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 593 (1004)
+|...+.+.....-..... .........+...+...|+++.|...+++.
T Consensus 509 ~A~~~~~~al~~~~~~g~~-------------------------------~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVY-------------------------------HYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHHhhhcch-------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888887776521100000 001122344556677788888887776653
Q ss_pred CCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCCC--hhhHHHHHHHHhhhhhHHHHHHHHHH
Q 001852 594 AEK-----------NSVTWNAMIAANALHGQGEEVLKLLVKMRHTG--VYFD--RFSLSEGLAAAAKLAVLEEGHQLHGL 658 (1004)
Q Consensus 594 ~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~ 658 (1004)
... ....+..+...+...|++++|...+.+..... ..+. ...+..+.......|+.+.|...+..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 210 12234445556666788888888887765421 1121 12222233345567777888777766
Q ss_pred HHHhCCCC-Chh-----HHhHHHhhHHhcCChhhHhhhcCCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001852 659 ATKLGFDL-DPF-----VTNAAMDMYGKCGEIGDVLRIAPQPVDRPR-------LSWNILISVFARHGYFQKAIETFDEM 725 (1004)
Q Consensus 659 ~~~~g~~~-~~~-----~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m 725 (1004)
.....-.. ... ........+...|+.+.|.+.+.....+.. ..+..+..++...|+.++|..++++.
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54321110 000 001122444567888888887655443211 11345666777888888888888887
Q ss_pred hhc-----cCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 001852 726 LKY-----VKPD-HVTFVSLLSACNHGGLVDKGLQYYNTMTTE 762 (1004)
Q Consensus 726 ~~~-----~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 762 (1004)
... ..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 718 l~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 718 NENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 754 1111 135556667778888888888888887753
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.10 E-value=0.026 Score=61.77 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC-ChhHHhHHHhhHHhcCChhhHhhhcC
Q 001852 614 GEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDL-DPFVTNAAMDMYGKCGEIGDVLRIAP 692 (1004)
Q Consensus 614 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~ 692 (1004)
.+.....++++...-..--..+|...+....+..-++.|+.+|..+.+.+..+ +++++++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44445555555443222223567777777777777888888888887776666 7788888887776 466777777777
Q ss_pred CCCC--CChh-HHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHhhcC--
Q 001852 693 QPVD--RPRL-SWNILISVFARHGYFQKAIETFDEMLKY-VKPDH--VTFVSLLSACNHGGLVDKGLQYYNTMTTEFG-- 764 (1004)
Q Consensus 693 ~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 764 (1004)
...+ .|.. --+..+.-+...++-..|..+|++.+.. +.||. ..|..+|.-=+.-|+..-.+++=+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6553 3333 3345566666667777777777777776 55544 4677777777777777777777777666555
Q ss_pred CCCCCchHHHHHHHHHhcCChH
Q 001852 765 VPAGIEHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 765 ~~p~~~~y~~lv~~l~r~g~~~ 786 (1004)
..|...+-..+++-|+=.+...
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 4544455555666665554443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=5.6e-05 Score=84.64 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=117.6
Q ss_pred CCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHH
Q 001852 663 GFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSA 742 (1004)
Q Consensus 663 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a 742 (1004)
+++|-...-..+.+.+.++|-..+|..+|++. ..|...|.+|...|+..+|.++..+-.+ -+||+.-|..+++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 45555566667778888888888888888764 4677777888888888888888777776 37788888888777
Q ss_pred HhccCCHHHHHHHHHHhHhh----c---------------------CCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-
Q 001852 743 CNHGGLVDKGLQYYNTMTTE----F---------------------GVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM- 795 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~----~---------------------~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m- 795 (1004)
.-....+++|+++++..... . .+.| ...+|-...-+.-..++++.|.+.+..-
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 77777777777776654322 0 1111 1122222333333444555555444332
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 796 PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 796 ~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
...||.. .|++|-.++.++|+..+|....+++++-+-++...+....-+-.+.|.|++|.+..+.|.+
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 4555533 5666655555566666666666666555555555555544455555666666665555544
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.06 E-value=7.5e-05 Score=73.98 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=115.8
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSAC 743 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~ 743 (1004)
|..+ .-+-..|.-.|+-+++..+..+.. ..|....+..+....+.|++.+|+..|++....-+||..+|+.+.-+|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaal 144 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAAL 144 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHH
Confidence 3444 555666667777777777776644 245556677888888888999999988888875556888888888888
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHH
Q 001852 744 NHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPV-T-PNDLVWRSLLASSKIHGNVELAK 821 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~-~-p~~~~~~~ll~~~~~~g~~e~a~ 821 (1004)
.+.|+.++|..-|.+..+..+-+ ...++.|.-.|.-.|+++.|..++...-. . .|..+-..|.-+-...|+++.|+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888888887643333 34566677777778888888888877632 2 25667777777777888888888
Q ss_pred HHHHHHH
Q 001852 822 KAAEHLF 828 (1004)
Q Consensus 822 ~~~~~~~ 828 (1004)
.+..+-+
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 8777643
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00097 Score=66.71 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=57.1
Q ss_pred HhhHHhcCChhhHhhhcCCCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCC
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDR-----PRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~ 748 (1004)
...+-+.|+.+.|.+.+-.|+.+ |+++...|.-.- ..|++.+..+-+.-+++. .| -..||..++-.|++...
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~-nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ-NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc-CCCChHHHHHHHHHHhhhHH
Confidence 34567889999999999999853 677776654332 234444444444445553 55 56799999999999988
Q ss_pred HHHHHHHHHH
Q 001852 749 VDKGLQYYNT 758 (1004)
Q Consensus 749 ~~~a~~~~~~ 758 (1004)
++-|-.++..
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 8888776643
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.02 E-value=0.0016 Score=82.70 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=90.7
Q ss_pred hHHHhhHHhcCChhhHhhhcCCCCC-------CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc---cCCC--HhH
Q 001852 672 NAAMDMYGKCGEIGDVLRIAPQPVD-------RP----RLSWNILISVFARHGYFQKAIETFDEMLKY---VKPD--HVT 735 (1004)
Q Consensus 672 ~~li~~y~k~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~pd--~~t 735 (1004)
..+...+...|++++|...+++... ++ ...+..+...+...|++++|...+++.... ..|. ..+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3344455555666655555443221 00 112333444455556666666666665543 1121 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchH-----HHHHHHHHhcCChHHHHHHHHhCCC--CCCH----HHH
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHC-----VCIIDLLGRSGRLAEAETFINKMPV--TPND----LVW 804 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-----~~lv~~l~r~g~~~eA~~~i~~m~~--~p~~----~~~ 804 (1004)
+..+..+....|+.++|...++.+............+ ......+...|+.++|.+++..... .... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 3334445556667777766666654321111100001 0011333446666777766655411 1111 113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 805 RSLLASSKIHGNVELAKKAAEHLFELDPS------DDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 805 ~~ll~~~~~~g~~e~a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
..+..++...|+.+.|...++++++.... ....+..++..|...|+.++|......
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555567777777777776664211 122455666667777777776664433
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00022 Score=70.79 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=102.0
Q ss_pred CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 001852 730 KP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRS 806 (1004)
Q Consensus 730 ~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ 806 (1004)
.| |... ..+-.++-..|+-+++..+.......+ +-+.+.....+-...+.|++.+|...+.+. +-.||...|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 45 4545 667778888888888888777654322 222233444778888999999999999887 45667779998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+..+|-..|+++.|...+.+++++.|.++.++..|+-.|.-.|+.++|..+...-..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999999999999999887555443
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.97 E-value=6.3e-05 Score=70.94 Aligned_cols=116 Identities=9% Similarity=-0.079 Sum_probs=87.7
Q ss_pred cCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCc
Q 001852 691 APQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIE 770 (1004)
Q Consensus 691 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 770 (1004)
|++....++..+..+...+.+.|++++|+..|++....-+.+...+..+..+|...|++++|...|++..+ -.+.+..
T Consensus 16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~ 93 (144)
T PRK15359 16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPE 93 (144)
T ss_pred HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcH
Confidence 33333444545666778888999999999999998884333777888899999999999999999999875 2233567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHH
Q 001852 771 HCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLL 808 (1004)
Q Consensus 771 ~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll 808 (1004)
.+..++.++.+.|++++|.+.++.. ...|+.. .|....
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 7888888999999999999988886 5667654 444433
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.96 E-value=0.00019 Score=84.95 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=141.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHH-HHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHH--hCCCCChhHHhH
Q 001852 597 NSVTWNAMIAANALHGQGEEVL-KLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATK--LGFDLDPFVTNA 673 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ 673 (1004)
++...+.+=.+....|..++|- ++..+..+ ++. ..+.+..+.+-+-.+.. .....++..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLE---RHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHH---HhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 3344444555667778888774 44554432 233 23333333333222221 244567888899
Q ss_pred HHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hHHHHHHHHHhccCCH
Q 001852 674 AMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH-VTFVSLLSACNHGGLV 749 (1004)
Q Consensus 674 li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t~~~ll~a~~~~g~~ 749 (1004)
|.+.....|..++|..+++...+ || ...+..++..+.+.+++++|+..+++.+.. .||. .....+..++.+.|.+
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999998874 54 457888999999999999999999999994 7754 5566677888999999
Q ss_pred HHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 001852 750 DKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLA 809 (1004)
Q Consensus 750 ~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~ 809 (1004)
++|..+|++.... .|+ ...+..+..+|-..|+.++|...+++. -..|...-++.++.
T Consensus 171 ~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 171 EQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 9999999999862 343 577888999999999999999999987 34555555555543
No 123
>PLN02789 farnesyltranstransferase
Probab=97.96 E-value=0.00022 Score=76.50 Aligned_cols=169 Identities=9% Similarity=0.108 Sum_probs=127.8
Q ss_pred hHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCH--H
Q 001852 677 MYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHG-YFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLV--D 750 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~--~ 750 (1004)
.+.+.+..++|+...+++.. .+..+|+.....+...| +.++++..++++.+..+.+..+|......+.+.|.. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 34455677788888877664 34467887777777777 689999999999985333666777666666667763 7
Q ss_pred HHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HHHH
Q 001852 751 KGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIH---GN----VELA 820 (1004)
Q Consensus 751 ~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~---g~----~e~a 820 (1004)
+++.+++.+.+ +.|. ...|.....++.+.|++++|+++++++ ...| +..+|.......... |. .+.+
T Consensus 126 ~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 78889988874 4554 467778888899999999999999998 4444 456888877766554 22 3567
Q ss_pred HHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 821 KKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 821 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
....+++++++|+|.+++..++.+|...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 8888899999999999999999999773
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.0005 Score=82.03 Aligned_cols=142 Identities=10% Similarity=0.115 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLL 779 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 779 (1004)
++..+..+|.+.|+.++|...++++++. .| |..+.+.+...++.. +.++|++++.+.... |
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~ 179 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA-DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------F 179 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------H
Confidence 4445555566666666666666666553 34 445555555555555 666666655555432 2
Q ss_pred HhcCChHHHHHHHHhC-CCCCC---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 780 GRSGRLAEAETFINKM-PVTPN---------------------DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
...+++.++.++..++ ...|+ ...|--|-..|+..++++.+..+++.+++++|.|..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 2222333333333332 11121 2233334455677789999999999999999999998
Q ss_pred eehhhhHhhhcCCchHHHHHHHHHh
Q 001852 838 YVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 838 ~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..-|+..|. +++.+-..+.+-++
T Consensus 260 ~~~l~~~y~--~kY~~~~~~ee~l~ 282 (906)
T PRK14720 260 REELIRFYK--EKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHHH--HHccCcchHHHHHH
Confidence 888888876 55555444444443
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00026 Score=77.55 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=135.0
Q ss_pred HHhHHhhHHHHcCChhhHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC--------CChhhHH
Q 001852 569 VQNSLITMYAKCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVY--------FDRFSLS 637 (1004)
Q Consensus 569 ~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~~ 637 (1004)
.|--|....+..++-..|+..+.+..+ .|....-+|...|...|.-.+|++.|+.-.....+ ++...-.
T Consensus 321 AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~ 400 (579)
T KOG1125|consen 321 AWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFEN 400 (579)
T ss_pred HHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccC
Confidence 344444444555555556666655443 36777888888899999999999999887543210 0100000
Q ss_pred HHHHHHhhhhhHHHHHHHH-HHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcC
Q 001852 638 EGLAAAAKLAVLEEGHQLH-GLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHG 713 (1004)
Q Consensus 638 ~ll~a~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 713 (1004)
. ........+....++| +.....+...|+.+...|.-+|--.|+++.|...|+.... .|...||-|...++...
T Consensus 401 ~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 401 T--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN 478 (579)
T ss_pred C--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc
Confidence 0 1222333444555555 4445566668888999999999999999999999998763 36678999999999999
Q ss_pred CHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 001852 714 YFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
+.++|+..|++.++ ++|.-+ ....|.-.|...|.++||.++|-+..
T Consensus 479 ~s~EAIsAY~rALq-LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 479 RSEEAISAYNRALQ-LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ccHHHHHHHHHHHh-cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999 688654 55568889999999999999887664
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.94 E-value=1.1e-05 Score=54.92 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh
Q 001852 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR 633 (1004)
Q Consensus 599 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 633 (1004)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=0.00026 Score=76.18 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=56.4
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVEL 819 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~ 819 (1004)
+...|..++|+..++....+ .|+. ......++++.++++.++|.+.++++ ...|+ ...|-++..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34445555555555554332 2322 22333445555555555555555554 34444 3345555555555555555
Q ss_pred HHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 820 AKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
|+..++..+.-+|+|+..|.+|+..|...|+-.++...+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 5555555555555555555555555555555444444443
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=1.6e-05 Score=54.12 Aligned_cols=35 Identities=31% Similarity=0.644 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCc
Q 001852 92 ASWNNTMSGLVRLGLYQESVGFFNEMLSFGVRPTG 126 (1004)
Q Consensus 92 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 126 (1004)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.89 E-value=0.00028 Score=84.39 Aligned_cols=199 Identities=15% Similarity=0.156 Sum_probs=158.8
Q ss_pred CCChhHHhHHHhhHHhcCChhhHhhhcCCCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHH
Q 001852 665 DLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR--------PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTF 736 (1004)
Q Consensus 665 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~ 736 (1004)
+.+...|-..+......++++.|++++++.... -.-.|.++++....+|.-+...++|+++.+-.. .-..|
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHH
Confidence 345667777777888889999999998876531 235799999988889988889999999987422 23458
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 001852 737 VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN---DLVWRSLLASSK 812 (1004)
Q Consensus 737 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~---~~~~~~ll~~~~ 812 (1004)
..|+..|...+.+++|.++++.|.++++ .....|...++.+.|...-++|.++++++ ..-|. ..+..-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999999887 55677888889999999988999888775 33333 335566666678
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCC
Q 001852 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKI 866 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 866 (1004)
++||-|.|+.++|-++.-.|.....|..+.+.=...|.-+.++.+.+..-+.++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 899999999999999999999988888888888888888888888877665443
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.89 E-value=0.00014 Score=68.20 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=67.6
Q ss_pred HHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 001852 721 TFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVT 798 (1004)
Q Consensus 721 l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~ 798 (1004)
+|++.+. ..| +......+...+...|++++|.+.|+...+. .+.+...+..+..++.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG-LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc-CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444 344 3344555666666777777777777766542 1223455556666666667777777666654 333
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 799 PN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 799 p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
|+ ...|..+...+...|+.+.|...++++++++|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 445666666666667777777777777777776544
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=9.5e-05 Score=69.25 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeeh
Q 001852 764 GVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVL 840 (1004)
Q Consensus 764 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~ 840 (1004)
..+|+ ......++..+...|++++|.+.++.. ...|+ ...|..+...+...|+.+.|...++++++++|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34553 366777889999999999999999887 55564 5688888888889999999999999999999999999999
Q ss_pred hhhHhhhcCCchHHHHHHHHHhh
Q 001852 841 YSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 841 l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
++.+|...|++++|....+...+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998776544
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.0015 Score=70.61 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHH-HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTF-VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCII 776 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv 776 (1004)
...|-...-.+-..|+.++|+..++.++.. .||..-| ......+...|++++|.+.++++... .|+ ..-.-.+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHH
Confidence 344555555667789999999999998885 6655544 45567889999999999999999753 555 34444577
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 777 DLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
++|...|+..||...++.. ....|+..|..|..+|...||..++..+.. ..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHH
Confidence 8999999999999999887 344557799999999999999998877744 467778999999
Q ss_pred HHHHHHHhhC
Q 001852 855 ENVRRQMGWN 864 (1004)
Q Consensus 855 ~~~~~~m~~~ 864 (1004)
....+..+++
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 8876665553
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.094 Score=61.14 Aligned_cols=90 Identities=14% Similarity=0.323 Sum_probs=55.0
Q ss_pred HhHHHhhHHhcCChhh---HhhhcCCCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHH
Q 001852 671 TNAAMDMYGKCGEIGD---VLRIAPQPVDRPRLSW---NILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSAC 743 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~---A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~ 743 (1004)
.+.|+|++-+.++... |+-+++.....+..-| -.+|..|.-.|-...|.++|+.+--. +.-|..-|. +..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 4567777777776553 5555555544333333 34667777777777777777777654 666665554 34455
Q ss_pred hccCCHHHHHHHHHHhHh
Q 001852 744 NHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 744 ~~~g~~~~a~~~~~~m~~ 761 (1004)
...|++.-+...++...+
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 566676666666665544
No 134
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00096 Score=66.73 Aligned_cols=280 Identities=8% Similarity=0.057 Sum_probs=189.7
Q ss_pred hHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHH-HHHHhhh
Q 001852 571 NSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEG-LAAAAKL 646 (1004)
Q Consensus 571 ~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~ 646 (1004)
++.+.-..+..++++|.+++..-.++ +....+.|...|-...++.+|-..++++-.. .|...-|... ...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 45555567778888998888766554 4556777888888888999999999988663 4544433322 2344455
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHH----hhHHhcCChhhHhhhcCCCCC-CChhHHHHHHHHHHhcCCHHHHHHH
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAM----DMYGKCGEIGDVLRIAPQPVD-RPRLSWNILISVFARHGYFQKAIET 721 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~k~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l 721 (1004)
+....|..+..++.+. ....+..+ ...-..|++..++.+.++.+. .+..+.+......-+.|++++|++-
T Consensus 92 ~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred cccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 6666666666655432 11111111 122356788888888888884 5666666666667899999999999
Q ss_pred HHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-------------C--------CchHHHHHH--
Q 001852 722 FDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-------------G--------IEHCVCIID-- 777 (1004)
Q Consensus 722 ~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-------------~--------~~~y~~lv~-- 777 (1004)
|+...+- --...+.|+ +.-+..+.|+++.|+++...+++. |+.. + .-|-+.++.
T Consensus 167 FqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999886 222345566 444566788999999999888764 3221 1 123333443
Q ss_pred -----HHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhc
Q 001852 778 -----LLGRSGRLAEAETFINKMP----VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT 848 (1004)
Q Consensus 778 -----~l~r~g~~~eA~~~i~~m~----~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 848 (1004)
++-+.|+++-|.+-+..|| -+.|+++...+. .--..|+.-.+.+-..-++++.|=.+.++..|--+|.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A-l~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA-LMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH-HhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhh
Confidence 4568899999999999996 345666665542 123457777888888899999996666777777788888
Q ss_pred CCchHHHHHHHH
Q 001852 849 GRWDDVENVRRQ 860 (1004)
Q Consensus 849 g~~~~a~~~~~~ 860 (1004)
.-++-|+.|...
T Consensus 324 eyf~lAADvLAE 335 (459)
T KOG4340|consen 324 EYFDLAADVLAE 335 (459)
T ss_pred HHHhHHHHHHhh
Confidence 888888877543
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00028 Score=77.17 Aligned_cols=127 Identities=12% Similarity=0.069 Sum_probs=101.4
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHH
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVD 750 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~ 750 (1004)
-.+|+..+...++++.|.++|+++.+.++..+-.|+..+...++-.+|++++++.++..+-|..........|...|+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 34556666777888889999988887777777778888888888899999999988753336556665666788999999
Q ss_pred HHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 001852 751 KGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKMPVTPN 800 (1004)
Q Consensus 751 ~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~ 800 (1004)
.|+.+.+++.+ +.|+ ...|..|+.+|...|++++|+-.++.+|+.|.
T Consensus 252 lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 252 LALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 99999999874 4665 47888999999999999999999999986653
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0001 Score=74.42 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=63.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 707 SVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 707 ~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
.-+.+.+++++|+..|.+.++. .| |.+-|..-..||++.|.++.|++-.++.+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al------------------------- 142 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL------------------------- 142 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-------------------------
Confidence 3445666777777777777763 44 56666666666666666666666555543
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 786 AEAETFINKMPVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 786 ~eA~~~i~~m~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
.+.|... .|..|.-++...|++++|+++|+++++++|+|..
T Consensus 143 ----------~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 143 ----------SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred ----------hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 2344433 7777777888888888888888888888888764
No 137
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.77 E-value=0.00085 Score=80.44 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=140.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCC---ChhHHhHHHhhHHhcCChhhHhhhcCCCCC-CC-hhHHHHHH
Q 001852 633 RFSLSEGLAAAAKLAVLEEGHQLHGLATKL-GFDL---DPFVTNAAMDMYGKCGEIGDVLRIAPQPVD-RP-RLSWNILI 706 (1004)
Q Consensus 633 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-~~-~~~~~~li 706 (1004)
+..|...+.-..+.+.++.|+++.+.+.+. ++.- -..+|.+++++----|.-+...++|++..+ -| ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345566666666777777777777666543 2211 234677777777777777778888888775 33 34677888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCch---HHHHHHHHHhcC
Q 001852 707 SVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEH---CVCIIDLLGRSG 783 (1004)
Q Consensus 707 ~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---y~~lv~~l~r~g 783 (1004)
.-|.+.+..++|.++|+.|.+.+.-....|...+..+.+...-++|..++.++.+- -|..+| ..-.+++-.+.|
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcC
Confidence 88888888888888888888876656667888888888888888888888887652 344444 344556667788
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 784 RLAEAETFINKM-P-VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 784 ~~~eA~~~i~~m-~-~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+-+.+..+++.. . .......|+.++..-..||+.+-++.++|+++++.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 888888887765 2 22345688888888889999999999999988864
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=4.2e-05 Score=51.59 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 001852 193 VVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCC 226 (1004)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 226 (1004)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=5.4e-05 Score=51.03 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCC
Q 001852 294 TISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEI 327 (1004)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 327 (1004)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.68 E-value=0.00027 Score=77.26 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcC
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSG 783 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g 783 (1004)
+++..+...++++.|+++|+++.+. .|+.. ..++..+...++-.+|.+++++..+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~---------------------- 228 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-DPEVA--VLLARVYLLMNEEVEAIRLLNEALK---------------------- 228 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHH----------------------
Confidence 3444445555666666666665553 34422 2244444444455555554444432
Q ss_pred ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 784 RLAEAETFINKMPVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 784 ~~~eA~~~i~~m~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
..| +...+......|...++.+.|..+++++.++.|++...|..|+.+|...|+|++|.-.-..+
T Consensus 229 -------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 229 -------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred -------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 122 23344444455677788889999999999999998888899999999999999988776665
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0015 Score=61.86 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC--chHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI--EHCVC 774 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~ 774 (1004)
.|..++..+ ..++...+.+.++++.+. .|+. .....+...+...|++++|...|+..... ...|.. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 345555555 377788888888888875 3332 34444566777888888888888888764 222222 23334
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001852 775 IIDLLGRSGRLAEAETFINKMPVT-PNDLVWRSLLASSKIHGNVELAKKAAEHLF 828 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m~~~-p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~ 828 (1004)
+..++...|++++|+..++..+.. ..+..+..++..+...|+.+.|+.+|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677777888888888888775322 234456666666777777777777777653
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0086 Score=59.16 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=86.5
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH
Q 001852 709 FARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 709 ~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 788 (1004)
+-..|++++|+++++..++.-+-|.+++.--+-+.-..|+--+|++-+....+. +..|.+.|.-+.++|...|.+++|
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 345677777777777777753336677776666666677777777777776663 345556666677777777888877
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC
Q 001852 789 ETFINKM-PVTPN-DLVWRSLLASSKIHG---NVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 789 ~~~i~~m-~~~p~-~~~~~~ll~~~~~~g---~~e~a~~~~~~~~~l~p~~~ 835 (1004)
.-.++++ -+.|- +.....|....+..| |++.+.+.+++++++.|.+.
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 7777776 23343 335566666655554 88899999999999999653
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.019 Score=57.27 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=98.1
Q ss_pred HHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhH
Q 001852 656 HGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVT 735 (1004)
Q Consensus 656 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t 735 (1004)
.+.+.......+......-...|.+.|+.++|.+.......-+....|. ..+.+..+.+-|.+.+++|.+ --+..|
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--ided~t 171 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--IDEDAT 171 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--cchHHH
Confidence 3444444444444444444556788888888888877744444443332 233455677778888888875 234445
Q ss_pred HHHHHHHHh----ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 001852 736 FVSLLSACN----HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLA 809 (1004)
Q Consensus 736 ~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~ 809 (1004)
.+-|..++. ..+.+.+|.-+|+.|.++ .+|+....+.+..+....|+++||+.+++.. ....++.+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 555555553 344577777777777653 4455555555555555666777777666665 22223334433333
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCC
Q 001852 810 SSKIHG-NVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 810 ~~~~~g-~~e~a~~~~~~~~~l~p~~~ 835 (1004)
.-...| +.+--.+...++....|+++
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 332333 45555666666666666543
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.00068 Score=61.66 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=60.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLA 809 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~ 809 (1004)
+..+...+...|++++|...|+.+.+.+.-.|. ...+..++.++.+.|++++|.+.++.. ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666666666543322111 233444566666666666666666554 22222 345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 810 SSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 810 ~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
++...|+.+.|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 777788888888888888888887654
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.00092 Score=65.46 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC-C-HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKY-VKP-D-HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVC 774 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 774 (1004)
...+..+...+...|++++|+..|++.++. ..| + ...+..+...+.+.|++++|+.++++..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 345666667777777777777777777654 122 1 245666677777777777777777776642 33 2344455
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 775 IIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
++.++...|+...|..-.... ...++.|...++++++++|++ |.-+.+.+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 556666666655544322211 123678899999999999987 5555555555554
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0028 Score=62.49 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDH-VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLG 780 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~ 780 (1004)
+..+.-+....|+.+.|...++++...+ |.+ ..-..-..-+-..|++++|++++++..++. +-+...|.--+-++-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence 4445556667888999999999988875 533 222222334566899999999999998752 335567777777777
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 781 RSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 781 r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
..|+--+|.+-+... .+..|...|.-|...|...|+++.|.-.+|+++=+.|.++-++-.|+.++.-.|--+.-
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 788888999887776 57788899999999999999999999999999999999999999999999888774443
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.48 E-value=0.00011 Score=48.16 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 001852 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGV 629 (1004)
Q Consensus 599 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 629 (1004)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.47 E-value=0.00093 Score=63.25 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=92.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHH
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMP-VTPND----LVWRSLLASS 811 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~~----~~~~~ll~~~ 811 (1004)
.++.+. ..|+..++...++.+.++++-.| .....-.+...+...|++++|.+.++... ..||+ .++..|...+
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 333344 47888899999999988765543 22445557788899999999999998873 33443 3566677788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 812 KIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 812 ~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
...|+++.|...++.. .-.|-.+..+.+++++|.+.|++++|...++.
T Consensus 96 ~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8899999999999773 44455566888999999999999999998764
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00013 Score=47.94 Aligned_cols=31 Identities=29% Similarity=0.700 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 001852 92 ASWNNTMSGLVRLGLYQESVGFFNEMLSFGV 122 (1004)
Q Consensus 92 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 122 (1004)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0024 Score=73.40 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=74.2
Q ss_pred CCChhHHHHHHHHHHhc-----CCHHHHHHHHHHHhhccCCC-HhHHHHHHHHHhcc--------CCHHHHHHHHHHhHh
Q 001852 696 DRPRLSWNILISVFARH-----GYFQKAIETFDEMLKYVKPD-HVTFVSLLSACNHG--------GLVDKGLQYYNTMTT 761 (1004)
Q Consensus 696 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~ 761 (1004)
..|..+|...+.|.... ++..+|..+|++.++ ..|| ...+..+..++... +.+.++.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45667777777765432 236789999999998 4775 44555443333211 112222333322221
Q ss_pred hcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 762 EFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 762 ~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
....+.+...|..+.-.....|++++|...++++ .+.|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1011222234444444444456666666666555 45555555555555566666666666666666666666554
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.33 E-value=0.00058 Score=54.23 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 776 IDLLGRSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 776 v~~l~r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
+..+.+.|++++|.+.+++. ...|+. .+|..+..++...|+++.|...++++++++|++|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34555666666666666665 444543 3666666666666777777777777777777653
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.32 E-value=0.59 Score=54.87 Aligned_cols=121 Identities=12% Similarity=0.042 Sum_probs=79.5
Q ss_pred CChhhHHHhhccCC--CCchhHHHHHHHHH--HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHH
Q 001852 176 GHINKARRVFEEMP--VRNVVSWTSLMVAY--LDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFL 251 (1004)
Q Consensus 176 g~~~~A~~~f~~m~--~~~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 251 (1004)
+++..|....++.. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-..+...+..+++..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45555555555543 3443 344445544 4678888888888777665543 6777777777788888888888888
Q ss_pred HHHHHhcCCCChhhhhHHHHHhhCCCCHH----HHHHHHhhCCCCCcchHHHH
Q 001852 252 GHVIKFGFHYTVPVANSLISMFGNFGSVK----EARCIFDSMHVRDTISWNSM 300 (1004)
Q Consensus 252 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~d~~~~~~l 300 (1004)
+...+.. |+......+..+|.+-+++. .|.++++..+++--.-|+.+
T Consensus 101 e~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 101 ERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 8776653 45666677777777777654 46667776666655566544
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.32 E-value=0.00097 Score=73.45 Aligned_cols=102 Identities=16% Similarity=0.044 Sum_probs=73.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG 815 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g 815 (1004)
-...+...|++++|+.+|+++.+. .| +...|..+..+|.+.|++++|...++++ .+.|+ ...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 455666778888888888888752 44 3466667777888888888888877776 45554 446777777777888
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
+++.|+..++++++++|+++.....+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888888888887765555433
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.32 E-value=0.00091 Score=57.47 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=55.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCc
Q 001852 774 CIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851 (1004)
Q Consensus 774 ~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 851 (1004)
.++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++..|.++..+..++.+|...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3455555666666666666554 23333 245555566666667777777777777777777766666777777777777
Q ss_pred hHHHHHHHHH
Q 001852 852 DDVENVRRQM 861 (1004)
Q Consensus 852 ~~a~~~~~~m 861 (1004)
++|....+..
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 7776654443
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=9.4e-05 Score=62.45 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHH
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVR 858 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 858 (1004)
.|..+..++...|+.+.|..++++ .+.+|.++....+++..|.+.|+|++|.++.
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344444444444444444444444 4444444444444455555555555555443
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.27 E-value=0.0012 Score=72.70 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhc
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRS 782 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~ 782 (1004)
.....+...|++++|+++|++.++..+.+...|..+..+|...|++++|+..++++.+ +.| +...|..++.+|.+.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456677889999999999999985333777888899999999999999999999975 355 447788889999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 001852 783 GRLAEAETFINKM-PVTPNDLVWRSLLASS 811 (1004)
Q Consensus 783 g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~ 811 (1004)
|++++|...+++. .+.|+......++..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999886 5666655444444444
No 157
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.20 E-value=0.036 Score=66.65 Aligned_cols=85 Identities=8% Similarity=-0.030 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCIIDLLG-RSGRLAEAETFINKMPVTPNDLVWRSLLASSKI 813 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~-r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~ 813 (1004)
+.-+-.-|....+++++..+++.+.+ ..|+ .....-+++.|. +=+......++++...+ +.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l--------------~~ 288 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDI--------------GN 288 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHHhcc--------------cc
Confidence 33344455566677777777777753 3332 233334444443 11112222222222211 11
Q ss_pred c-CCHHHHHHHHHHHHhcCCCCCCC
Q 001852 814 H-GNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 814 ~-g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
. .++..+..-+|+.+..+|.+-..
T Consensus 289 ~~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 289 NRKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred CCccHHHHHHHHHHHeeecCCCEEE
Confidence 1 45666777788888777765443
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.18 E-value=0.0019 Score=58.70 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=78.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CCCeehh
Q 001852 770 EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD---DSSYVLY 841 (1004)
Q Consensus 770 ~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~---~~~~~~l 841 (1004)
..|-..+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...++++++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556778888999999999999887 33343 3467778888999999999999999999999986 4568899
Q ss_pred hhHhhhcCCchHHHHHHHHHhhC
Q 001852 842 SNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 842 ~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
+.+|...|++++|.+..+.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999988877653
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.17 E-value=0.00036 Score=56.24 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcC-CchHHHHHHHH
Q 001852 800 NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATG-RWDDVENVRRQ 860 (1004)
Q Consensus 800 ~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~ 860 (1004)
++.+|..++..+...|+++.|+..++++++++|+++..+..+|.+|...| ++++|.+..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888 68888776554
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.17 E-value=0.0031 Score=54.00 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
|..+...+...|++++|+..|++..+..+.+...+..+...+...|++++|..+|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666655322233444445555555555555555555543
No 161
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.04 Score=55.06 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCCchHH----HHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAGIEHCV----CIIDLLGRSGRLAEAETFINKM--PVTPNDLVWRSLLASSKIHGNVE 818 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~----~lv~~l~r~g~~~eA~~~i~~m--~~~p~~~~~~~ll~~~~~~g~~e 818 (1004)
+..++|-|...++.|.+- .- -.+.+ ..|.+..-.+++.+|.-++++| ...|++.+.+-.+.+|...||++
T Consensus 149 k~~r~d~A~~~lk~mq~i---de-d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI---DE-DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHcc---ch-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 444555566666666431 11 12222 2333334455666677667666 35666666666666666667777
Q ss_pred HHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 819 LAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 819 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
+|+...+.++..+|++|.....+.-.--..|+-.++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 777777777776666654333332233334554443
No 162
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=9.9e-05 Score=49.31 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCCCeehhhhHhhhcCCchHHH
Q 001852 824 AEHLFELDPSDDSSYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 824 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 855 (1004)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999985
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.01 Score=57.86 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC--CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKY-VKP--DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVC 774 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 774 (1004)
...|..+...+...|++++|+..|++.+.. ..| ...++..+...+.+.|+.++|+.++++..+. .|. ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 456788888888899999999999998875 222 1247788888899999999999999888753 343 345555
Q ss_pred HHHHHH-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 775 IIDLLG-------RSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 775 lv~~l~-------r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
+..++. +.|++++|.. ..+.|...++++++++|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 555665 3333333222 2446777788888888865
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.09 E-value=0.0081 Score=56.06 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=79.5
Q ss_pred cCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCee
Q 001852 763 FGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYV 839 (1004)
Q Consensus 763 ~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~ 839 (1004)
.|++++. +..-....-+-..|++++|..+|.-. -..| +..-|..|..+|...|+++.|...+..+..++++||.++.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 3555543 22222344455789999999998775 2222 3447899999999999999999999999999999999999
Q ss_pred hhhhHhhhcCCchHHHHHHHHHhh
Q 001852 840 LYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 840 ~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
..+..|...|+.++|........+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999997776543
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.05 E-value=0.035 Score=59.23 Aligned_cols=150 Identities=14% Similarity=0.190 Sum_probs=73.5
Q ss_pred hHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHhhccC-C-C----HhHHHHHHHHHh
Q 001852 672 NAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARH-GYFQKAIETFDEMLKYVK-P-D----HVTFVSLLSACN 744 (1004)
Q Consensus 672 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~-p-d----~~t~~~ll~a~~ 744 (1004)
...+++|.+.|++..|-+.+ ..+...|... |++++|++.|++..+.+. . + ..++..+...+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 33445666666666654443 3355566666 777777777777766511 1 1 124455566677
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC----C-chHHHHHHHHHhcCChHHHHHHHHhC-CCCC---C---HHHHHHHHHHHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAG----I-EHCVCIIDLLGRSGRLAEAETFINKM-PVTP---N---DLVWRSLLASSK 812 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~----~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p---~---~~~~~~ll~~~~ 812 (1004)
..|++++|.++|++.....--.|- . .+|...+-++-..|+...|.+.+++. ...| + ......|+.+|.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 777777777777776553211111 1 22223333444456677777666654 2222 1 224555666654
Q ss_pred hc--CCHHHHHHHHHHHHhcCC
Q 001852 813 IH--GNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 813 ~~--g~~e~a~~~~~~~~~l~p 832 (1004)
.. ..++.+..-++++.+|||
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 43 244455555554444443
No 166
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.04 E-value=0.76 Score=50.85 Aligned_cols=155 Identities=12% Similarity=0.188 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKY-VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCII 776 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 776 (1004)
..+|...+..-.+..-.+.|..+|.+..+. ..+ +.....+++. |--+++.+-|.++|+.=.+.||..|- .-.+.+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~--yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPE--YVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChH--HHHHHH
Confidence 356888888888887888999999999998 666 4444444444 44567889999999998887766553 344677
Q ss_pred HHHHhcCChHHHHHHHHhC-C--CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----CeehhhhHhhh
Q 001852 777 DLLGRSGRLAEAETFINKM-P--VTPND--LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS----SYVLYSNVCAA 847 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m-~--~~p~~--~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~ 847 (1004)
|.|.+.++-..|..++++. + +.||- .+|..+|.--..-||+....++-++-+.--|.+-. .-.++-+-|--
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 8999999999999999887 2 45554 49999999999999999999999998887773211 22344455666
Q ss_pred cCCchHHHH
Q 001852 848 TGRWDDVEN 856 (1004)
Q Consensus 848 ~g~~~~a~~ 856 (1004)
.+.+..-..
T Consensus 523 ~d~~~c~~~ 531 (656)
T KOG1914|consen 523 LDLYPCSLD 531 (656)
T ss_pred cccccccHH
Confidence 666555444
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.02 E-value=0.00053 Score=54.49 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
+...+...|+++.|+..++++++.+|+++..+..++.+|...|++++|....+...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999998887654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.01 E-value=0.0022 Score=62.75 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
.+|..+...+...|+.+.|+..++++++..|+++..+..++.+|...|+
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 4666667777777777888888888888888777777777777777666
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.98 E-value=0.002 Score=62.87 Aligned_cols=88 Identities=13% Similarity=-0.017 Sum_probs=66.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhH
Q 001852 770 EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNV 844 (1004)
Q Consensus 770 ~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~ 844 (1004)
..|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.+.|+..++++++++|.....+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34455556666677777777776665 22222 34788888889999999999999999999999999999999999
Q ss_pred hh-------hcCCchHHHHH
Q 001852 845 CA-------ATGRWDDVENV 857 (1004)
Q Consensus 845 y~-------~~g~~~~a~~~ 857 (1004)
|. ..|++++|...
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHhhHHHHHcccHHHHHHH
Confidence 98 77787755443
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.97 E-value=0.75 Score=49.49 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=51.4
Q ss_pred hHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 001852 677 MYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYY 756 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 756 (1004)
-+...|....|.++..+..-||-.-|-..+.+|+..+++++-.++... +-.++-|--.+.+|...|...+|..+.
T Consensus 186 ~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 334455555565555555555555566666666666666554443221 112244555555555556666665555
Q ss_pred HHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 001852 757 NTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 757 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
..+. +.--+++|.+.|.+.+|.+..
T Consensus 261 ~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 261 PKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 5421 123445555566665555443
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.005 Score=64.89 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=115.4
Q ss_pred hHHHHHH-HHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHH----
Q 001852 700 LSWNILI-SVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVC---- 774 (1004)
Q Consensus 700 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~---- 774 (1004)
.+|..+- .++...|+.++|...--..++.-..+......-..++-..+..+.|...|++.. .+.|+ |+..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpd--h~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPD--HQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh---ccChh--hhhHHhHh
Confidence 4555543 455778899999888777776422233333333344556778899999888764 33343 3221
Q ss_pred -----------HHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 775 -----------IIDLLGRSGRLAEAETFINKM-PVTP-----NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 775 -----------lv~~l~r~g~~~eA~~~i~~m-~~~p-----~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
=.+-..+.|++.+|.+.+... .+.| ++-.|.....+...+|+.+.|+.-.+.+++++|.-..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 234566899999999999876 4444 45567777777888999999999999999999999999
Q ss_pred eehhhhHhhhcCCchHHHHH-HHHHhh
Q 001852 838 YVLYSNVCAATGRWDDVENV-RRQMGW 863 (1004)
Q Consensus 838 ~~~l~~~y~~~g~~~~a~~~-~~~m~~ 863 (1004)
|..-++.|...++|++|.+- .+.|+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999874 555553
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.93 E-value=0.0015 Score=54.99 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHhhccC--CCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHH
Q 001852 712 HGYFQKAIETFDEMLKYVK--PDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 712 ~g~~~~A~~l~~~m~~~~~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA 788 (1004)
.|++++|+.+|+++.+..+ |+...+..+..++.+.|++++|..+++. . ...|.. ...-.++.+|...|+++||
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677777777777776511 2344444566777777777777777766 2 112211 2222335666666666666
Q ss_pred HHHHHh
Q 001852 789 ETFINK 794 (1004)
Q Consensus 789 ~~~i~~ 794 (1004)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666543
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.92 E-value=0.011 Score=62.63 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHH
Q 001852 700 LSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSA-CNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDL 778 (1004)
Q Consensus 700 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 778 (1004)
.+|..++....+.+..+.|-.+|.+.++...-....|...... +...++.+.|..+|+...+.++- +...+.+.++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 4677778877777778888888888875322234445544444 33456666688888888876433 44556677788
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 779 LGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
+.+.|+.+.|..++++. ..-|. ..+|...+.--..+|+++....+.+++.++-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88888888888888875 22233 349999999999999999999999999999988544
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.90 E-value=0.11 Score=54.67 Aligned_cols=274 Identities=19% Similarity=0.191 Sum_probs=171.5
Q ss_pred HhHHhhHHH--HcCChhhHHHHHhcCC---CCCHhHHHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCh--hhHHHHH
Q 001852 570 QNSLITMYA--KCGDLNSSNYIFEGLA---EKNSVTWNAMIAA--NALHGQGEEVLKLLVKMRHTGVYFDR--FSLSEGL 640 (1004)
Q Consensus 570 ~~~Li~~y~--k~g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll 640 (1004)
|.+|-.++. -.|+-..|+++-.+.. ..|....--++.+ -.-.|++++|.+-|+.|... |.. .-+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444443 3567777777766543 2354444444443 34478999999999999862 221 1222233
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC-----CCChh--HHHHHHHHHHh--
Q 001852 641 AAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV-----DRPRL--SWNILISVFAR-- 711 (1004)
Q Consensus 641 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~-- 711 (1004)
-..-..|..+.++++-+..-..-.. -.-.+.+.++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3334567777777776665443322 23456778888889999999999887643 34442 22233333322
Q ss_pred -cCCHHHHHHHHHHHhhccCCCHhHH-HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 712 -HGYFQKAIETFDEMLKYVKPDHVTF-VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 712 -~g~~~~A~~l~~~m~~~~~pd~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
.-+...|...-.+..+ +.||-+.- +.-..++...|++.+|-.+++.+- ...|.++..... ...|.|+ -++
T Consensus 241 ldadp~~Ar~~A~~a~K-L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY--~~ar~gd--ta~ 312 (531)
T COG3898 241 LDADPASARDDALEANK-LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLY--VRARSGD--TAL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh-cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHH--HHhcCCC--cHH
Confidence 2356667666666666 57876543 334578899999999999999985 445665543222 2234454 333
Q ss_pred HHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhc-CCchHHHH
Q 001852 790 TFINKM----PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT-GRWDDVEN 856 (1004)
Q Consensus 790 ~~i~~m----~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~ 856 (1004)
.-+++. .++|+.. .-.++..+-...|++-.|...+|.+...+|.. ++|.+|+++-... |+-.++..
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHH
Confidence 333332 4677754 55566677778899999999999999999975 5688999987665 76665544
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0025 Score=65.17 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=79.1
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCCCeehhh
Q 001852 768 GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIH---GNVELAKKAAEHLFELDPSDDSSYVLYS 842 (1004)
Q Consensus 768 ~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~---g~~e~a~~~~~~~~~l~p~~~~~~~~l~ 842 (1004)
|.+-|..|...|.+.|+.++|..-+.+. .+.|+ +.+|..+..++... .+..+|+.++++++++||.|.....+|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 5577777777777777777777777665 34444 55777777665444 2678999999999999999999999999
Q ss_pred hHhhhcCCchHHHHHHHHHhhCCCc
Q 001852 843 NVCAATGRWDDVENVRRQMGWNKIK 867 (1004)
Q Consensus 843 ~~y~~~g~~~~a~~~~~~m~~~~~~ 867 (1004)
-.+...|++.+|...++.|.+....
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999875443
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.19 Score=56.21 Aligned_cols=166 Identities=15% Similarity=0.171 Sum_probs=90.7
Q ss_pred hHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHH
Q 001852 575 TMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQ 654 (1004)
Q Consensus 575 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 654 (1004)
+.++-.|++.+|-++| .++|.-..|+++|..|+-- -..+-+...|.-++-+.
T Consensus 640 ~~~Ay~gKF~EAAklF------------------k~~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLF------------------KRSGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHhhhhHHHHHHHH------------------HHcCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHH
Confidence 3345567777777766 3456666777777766421 11122233333333333
Q ss_pred HHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHh
Q 001852 655 LHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHV 734 (1004)
Q Consensus 655 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~ 734 (1004)
+...-.+ ..-++.--.+-..|+...|+.++|..+. +.+|-.+-++++-+++- ..+..
T Consensus 692 L~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld---~~ere 748 (1081)
T KOG1538|consen 692 LIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLD---KAERE 748 (1081)
T ss_pred HHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcc---hhhhh
Confidence 3221111 1111111234456677778877776543 34455555555544442 22334
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMP-VTPND 801 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~~ 801 (1004)
+...+..-+.+.....-|-++|.+|-. ...+|++....|+|+||..+.++.| +.||.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 444444444455566677788887743 2457888888899999999988886 55554
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0015 Score=52.39 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
..|+++.|+..++++++.+|+++..+..|+.+|.+.|++++|..+.+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466666666666666666666666666666666666666666655543
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.71 E-value=0.0042 Score=63.13 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchH
Q 001852 776 IDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDD 853 (1004)
Q Consensus 776 v~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 853 (1004)
.+-+...+++++|...+.+. .+.|. ++.|..-..+|.+.|.++.|++.++.++++||..+.+|-.|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34556778888888888876 66665 45667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 001852 854 VENVRRQMG 862 (1004)
Q Consensus 854 a~~~~~~m~ 862 (1004)
|.+.+++-.
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 999877643
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.70 E-value=0.018 Score=53.94 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=42.9
Q ss_pred CCCCCCchHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCCCe
Q 001852 764 GVPAGIEHCVCIIDLLGRSGRLAEAETFINKM---PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS--DDSSY 838 (1004)
Q Consensus 764 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m---~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~--~~~~~ 838 (1004)
.+.|+..+--.+...+.+.|+..||...+++. ++--|..+...+..+...-++...|...+|++++..|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 33444444444444444445544444444443 33344444444444444444444455555555444442 23334
Q ss_pred ehhhhHhhhcCCchHHHHH
Q 001852 839 VLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 839 ~~l~~~y~~~g~~~~a~~~ 857 (1004)
.+++..|+..|+..+|+..
T Consensus 164 Ll~aR~laa~g~~a~Aesa 182 (251)
T COG4700 164 LLFARTLAAQGKYADAESA 182 (251)
T ss_pred HHHHHHHHhcCCchhHHHH
Confidence 4444444444554444443
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.70 E-value=0.0026 Score=51.17 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=48.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 001852 770 EHCVCIIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG-NVELAKKAAEHLFELDP 832 (1004)
Q Consensus 770 ~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g-~~e~a~~~~~~~~~l~p 832 (1004)
..|..++..+.+.|++++|+..+++. ...|+ +.+|..+..++...| +.+.|+..++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555666666777777777766664 45565 448888888899999 79999999999999998
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.68 E-value=0.0028 Score=51.64 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 809 ASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 809 ~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..+...++++.|..+++++++++|+++..+..++.+|...|+|++|.+..+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455667788888888888888888888888888888888888888877665544
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.66 E-value=0.00097 Score=53.51 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=27.1
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL 802 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~ 802 (1004)
..|++++|+++|+++.+. .| +.+.+..++.+|.+.|++++|.+.++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 345556666666655442 22 3344444555555555555555555555 3444433
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.62 E-value=1.1 Score=48.18 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=80.8
Q ss_pred HhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHH
Q 001852 573 LITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEG 652 (1004)
Q Consensus 573 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 652 (1004)
.+.-+...|....|.++-.+..-+|---|-..+.+|+..+++++-.++... +-+++-|..++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 345556778999999999999888999999999999999999987775432 22458888999999999998888
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhh
Q 001852 653 HQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRI 690 (1004)
Q Consensus 653 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 690 (1004)
..+...+ .+..-+.+|.+||++.+|.+.
T Consensus 257 ~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 257 SKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 8776552 225568899999999888655
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.56 E-value=0.82 Score=48.46 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=136.0
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhh--hhhHHHHHHHHHHHHHhCCCCChhH--HhHH
Q 001852 601 WNAMIAANAL--HGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAK--LAVLEEGHQLHGLATKLGFDLDPFV--TNAA 674 (1004)
Q Consensus 601 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 674 (1004)
|.+|-.|+.- .|+...|.++-.+-... +..|...+..+|.+-.. .|+.+.+++-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444443 45666666665554432 55666667777765543 47777777777777641 11111 1222
Q ss_pred HhhHHhcCChhhHhhhcCCCCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhH--HHHHHHHHhc--
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDR--P-RLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVT--FVSLLSACNH-- 745 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t--~~~ll~a~~~-- 745 (1004)
.---.+.|..+.|+..-+..... . .-.|.+.+...+..|+++.|+++.+.-+.. +.||..- -..||.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 22334667777777666655432 2 245677777777888888888887776665 6665431 2223322211
Q ss_pred -cCCHHHHHHHHHHhHhhcCCCCCCchHHHH-HHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 001852 746 -GGLVDKGLQYYNTMTTEFGVPAGIEHCVCI-IDLLGRSGRLAEAETFINKM-PVTPNDLVWRSLLASSKIHGNVELAK- 821 (1004)
Q Consensus 746 -~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-v~~l~r~g~~~eA~~~i~~m-~~~p~~~~~~~ll~~~~~~g~~e~a~- 821 (1004)
.-+...|+..-... .++.|+...-..+ ..+|.+.|++.++-.+++.+ ..+|.+.+|..+. ..+.|+..+..
T Consensus 241 ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRl 315 (531)
T COG3898 241 LDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRL 315 (531)
T ss_pred hcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHH
Confidence 12334444433222 3556665433322 35677788888888888777 6777777775443 33455544332
Q ss_pred HHHHHHHhcCCCCCCCeehhhhHhhhcCCch
Q 001852 822 KAAEHLFELDPSDDSSYVLYSNVCAATGRWD 852 (1004)
Q Consensus 822 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 852 (1004)
+-++++-.+.|+|......++..-...|++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 3355666677777776666665544445443
No 185
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.52 E-value=0.0022 Score=46.06 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
.+|..|..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988877764
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.51 E-value=0.15 Score=54.37 Aligned_cols=129 Identities=23% Similarity=0.313 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhcc-CCHHHHHHHHHHhHhhcCCCCC----CchHHHHHH
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHG-GLVDKGLQYYNTMTTEFGVPAG----IEHCVCIID 777 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~ 777 (1004)
..-+..|...|+...|-+.+.+ +...|... |++++|+++|++..+.|..... ...+.-+++
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3345666667776666665555 44567777 8999999999998876544433 255667889
Q ss_pred HHHhcCChHHHHHHHHhC---CCCC---CHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCCC--eehhhhHh
Q 001852 778 LLGRSGRLAEAETFINKM---PVTP---NDLVWRSLLA---SSKIHGNVELAKKAAEHLFELDPSDDSS--YVLYSNVC 845 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m---~~~p---~~~~~~~ll~---~~~~~g~~e~a~~~~~~~~~l~p~~~~~--~~~l~~~y 845 (1004)
++.+.|++++|.+++++. .... ...+-..++. .+...||...|...+++..+.+|.-... +.++.++.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 999999999999999875 1211 1122222222 3345689999999999999999976554 44444443
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.47 E-value=0.017 Score=53.80 Aligned_cols=88 Identities=9% Similarity=-0.061 Sum_probs=54.1
Q ss_pred HHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCC
Q 001852 673 AAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGL 748 (1004)
Q Consensus 673 ~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~ 748 (1004)
++...+...|++++|.++|+-... .+..-|-.|...+...|++++|+..|...... .| |..++-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHcCC
Confidence 344445556666666666665442 23455666666666666777777766666663 34 55566666666666667
Q ss_pred HHHHHHHHHHhHh
Q 001852 749 VDKGLQYYNTMTT 761 (1004)
Q Consensus 749 ~~~a~~~~~~m~~ 761 (1004)
.+.|++.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666654
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.45 E-value=0.026 Score=48.65 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=65.8
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHcCC-CCChhhHHHHHHhhcCCC--------ChhhHHHHHHHHHHhcCCCchHHHH
Q 001852 298 NSMISVYSHSGLCDQSLKCFHWMRHVGQ-EINSTTFSTLLSACGSVD--------NLKWGRGIHGLAVKLALNSNVWVCN 368 (1004)
Q Consensus 298 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 368 (1004)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777999999999999999999 999999999999977543 2445677889999999999999999
Q ss_pred HHHHHHHh
Q 001852 369 TLLAMYSE 376 (1004)
Q Consensus 369 ~Li~~y~~ 376 (1004)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.42 E-value=0.17 Score=54.78 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=98.0
Q ss_pred hHHhcCChhhHhhhcCCCCCC---Ch----hHHHHHHHHHHh---cCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHh-
Q 001852 677 MYGKCGEIGDVLRIAPQPVDR---PR----LSWNILISVFAR---HGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACN- 744 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~- 744 (1004)
.|....+++.-+++++.+... ++ ..-....-++-+ .|+.++|++++..++.. ..++..||..++..|-
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 455566666666666655432 11 111223445556 78899999999886655 6677777777766542
Q ss_pred --------ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH----HHH--------HhCCCCC--CHH
Q 001852 745 --------HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE----TFI--------NKMPVTP--NDL 802 (1004)
Q Consensus 745 --------~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~----~~i--------~~m~~~p--~~~ 802 (1004)
.....++|+..|.+. |.+.|+..+=-.++-++..+|...+.. ++. ++-...+ |--
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 122467888888766 566666544444555666666533332 222 1111233 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+.+++.++...||.+.|.+++++++++.|..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 55899999999999999999999999998753
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.40 E-value=0.027 Score=62.10 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 001852 296 SWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYS 375 (1004)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 375 (1004)
|..++|+.|.+.|..+.+++++..=...|+-||.+|++.||..+.+.|++..|.++...|...+...+..++..-+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 34577777777777777777777777778888888888888888888888888888777777766666666555555555
Q ss_pred hc
Q 001852 376 EA 377 (1004)
Q Consensus 376 ~~ 377 (1004)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 54
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.37 E-value=0.055 Score=48.53 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc-cCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHH
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKY-VKPD--HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLL 779 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~-~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l 779 (1004)
.+..++-..|+.++|+.+|++.+.. ..+. ...+..+.+++.+.|++++|..+|+.....+.-.+.. ..-..+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3566778889999999999999886 3332 3467788899999999999999999888765332222 2222345577
Q ss_pred HhcCChHHHHHHHHh
Q 001852 780 GRSGRLAEAETFINK 794 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~ 794 (1004)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 888999999887643
No 192
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.32 E-value=0.045 Score=58.10 Aligned_cols=127 Identities=11% Similarity=0.069 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHH-HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAA-AAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY 678 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 678 (1004)
+|..++....+.+..+.|..+|.+.++.+ ......|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555556666666555321 1111112111111 11234444466666655554 445666777777777
Q ss_pred HhcCChhhHhhhcCCCCC--C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 001852 679 GKCGEIGDVLRIAPQPVD--R----PRLSWNILISVFARHGYFQKAIETFDEMLKY 728 (1004)
Q Consensus 679 ~k~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 728 (1004)
.+.|+.+.|+.+|++... + -...|...+.--.++|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888888877776653 1 2246777777777778888777777777774
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.30 E-value=0.22 Score=51.45 Aligned_cols=161 Identities=10% Similarity=-0.012 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH-hH---HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCch-HHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDH-VT---FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEH-CVCII 776 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~-~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv 776 (1004)
+-.....+...|++++|++.|++.... .|+. .+ ...++.++.+.|++++|...|++..+.++-.|+... +--++
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 333445555667777777777777764 3322 22 234556667777777777777777776666665531 11111
Q ss_pred HHHHhcC---------------C---hHHHHHHH----HhCCCCC---CHHH-----HH-------HHHHHHHhcCCHHH
Q 001852 777 DLLGRSG---------------R---LAEAETFI----NKMPVTP---NDLV-----WR-------SLLASSKIHGNVEL 819 (1004)
Q Consensus 777 ~~l~r~g---------------~---~~eA~~~i----~~m~~~p---~~~~-----~~-------~ll~~~~~~g~~e~ 819 (1004)
-..-..+ + ..+|.+.+ ++-|-.+ ++.. -+ ....-|.+.|+..-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 1100000 1 12333333 3333221 1110 01 11223667789999
Q ss_pred HHHHHHHHHhcCCCCCC---CeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 820 AKKAAEHLFELDPSDDS---SYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
|..-++.+++--|+.+. +...+.+.|...|.-++|..+.+.+..
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999998887655 566788899999999999998876643
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.26 E-value=0.029 Score=64.67 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=93.3
Q ss_pred cCCCHhHHHHHHHHHhcc--C---CHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhc--------CChHHHHHHHHh
Q 001852 729 VKPDHVTFVSLLSACNHG--G---LVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRS--------GRLAEAETFINK 794 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~--g---~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~--------g~~~eA~~~i~~ 794 (1004)
.++|...|...+.+..+. + ..++|+.+|++..+ +.|+- ..|..+..++... +++++|.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345778888888775543 2 37799999999975 57764 4555544433221 234455555554
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 795 M---P-VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 795 m---~-~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
. + ...++.++.++.-.....|+.+.|+..++++++++| +..+|+.++.+|...|+.++|....+...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 2 333456788777777778999999999999999999 57799999999999999999999765543
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.20 E-value=0.037 Score=61.10 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=89.6
Q ss_pred HHHHHHH---cCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHh--cCCCChhhhhHHHHHhhCCCCHHHHHHHHhhC
Q 001852 215 LYRYMRR---EGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKF--GFHYTVPVANSLISMFGNFGSVKEARCIFDSM 289 (1004)
Q Consensus 215 l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 289 (1004)
++..|.+ .+.+.+......+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 345566777777888887777777777777666655 23233445567888888888888888777654
Q ss_pred C----CCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCC
Q 001852 290 H----VRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSV 342 (1004)
Q Consensus 290 ~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 342 (1004)
. -||..|+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 3 3677888888888888888888888888887777777777777777666543
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.18 E-value=0.007 Score=49.29 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=49.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCe
Q 001852 777 DLLGRSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSY 838 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~ 838 (1004)
.+|.+.+++++|.+.++.+ ...|+. ..|..+...+...|+++.|...++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888887 555654 4777777788888999999999999999999876543
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.18 E-value=0.034 Score=47.95 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhcCC-cCCHhhHHHHHHhhcCCC--------ChHHHHHHHHHHHHhCCCCchHHHH
Q 001852 399 NSLVASHVQDEKYIDALKIFSNMLQKQR-LVNYVTFTSALAACSDPG--------FVVQGKIIHALVITMGLHDNLIVGN 469 (1004)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 469 (1004)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....++..|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677999999999999999999 899999999999976543 3456677889999999999999999
Q ss_pred HHHHHHHc
Q 001852 470 ALVSMYAK 477 (1004)
Q Consensus 470 ~Li~~y~~ 477 (1004)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.11 E-value=0.059 Score=56.16 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIID 777 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 777 (1004)
|+.-+..+.+.|++++|+..|++.++. .|+. ..+..+..++...|++++|...|+.+.+.|...|..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-------- 216 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-------- 216 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------
Confidence 333333334456777777777776664 3432 244556666666666666666666665544332211
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 778 LLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
+..|..++..+...|+.+.|...++++++..|+..
T Consensus 217 -----------------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 217 -----------------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred -----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 22344455556677888888888888888888653
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.09 E-value=0.7 Score=51.87 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=48.8
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCC
Q 001852 331 TFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEK 410 (1004)
Q Consensus 331 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 410 (1004)
+...+-.-+.+...+..|.++|..|-.. .+++++....+++++|..+-+..++--...|-.-..-++...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3333333444555666666666655322 4577788888999999999888887433334444444555555
Q ss_pred HHHHHHHHHH
Q 001852 411 YIDALKIFSN 420 (1004)
Q Consensus 411 ~~~A~~l~~~ 420 (1004)
+++|.+.|.+
T Consensus 820 FeEAqkAfhk 829 (1081)
T KOG1538|consen 820 FEEAQKAFHK 829 (1081)
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.04 E-value=0.024 Score=58.99 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---Ceehhh
Q 001852 771 HCVCIIDLLGRSGRLAEAETFINKM-PVTPN----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS---SYVLYS 842 (1004)
Q Consensus 771 ~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~---~~~~l~ 842 (1004)
.|..-++++.+.|++++|...++.. ...|+ +.++..|+.++...|+++.|...++++++..|+++. ++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444455555567777777666554 22333 235666888899999999999999999999888654 555668
Q ss_pred hHhhhcCCchHHHHHHHHHhh
Q 001852 843 NVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 843 ~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.+|...|++++|.++.+...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999887654
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.00 E-value=0.16 Score=47.85 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=92.3
Q ss_pred cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC-CCCchHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCCH
Q 001852 729 VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVP-AGIEHCVCIIDLLGRSGRLAEAETFINKM-PV-----TPND 801 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~-----~p~~ 801 (1004)
.-|....-..|..+....|+..||...|.+... |+- -+....-.+..+....++..+|...+++. .. .||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 466666666788888888888888888887765 443 34455556666777778888888888775 22 3443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
...+...+...|..+.|+.++|.++..-|. +..-...+..++++|+.+++..-...+
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 334566778889999999999999998885 455677788999999988886644333
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.99 E-value=4 Score=46.60 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=31.5
Q ss_pred cCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHh
Q 001852 564 ESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKM 624 (1004)
Q Consensus 564 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 624 (1004)
+.+....-.+.+|+.+.|.-++|.+.|-+-..+. +-+..|...+++.+|.++-+..
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555566677777777777766665444332 2234455556666666655543
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.39 Score=47.97 Aligned_cols=163 Identities=11% Similarity=-0.012 Sum_probs=110.9
Q ss_pred HhHHhhHHHHcCChhhHHHHHhcCCCC--CHh--------HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHH
Q 001852 570 QNSLITMYAKCGDLNSSNYIFEGLAEK--NSV--------TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEG 639 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 639 (1004)
+++|+..|.-..-+++-...|+.-..+ .+. .-+.++..+.-.|.+.-.+.++++..+...+-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 466777776666666666666644332 222 3355666667778888888888888886555566666666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHh-----CCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC---CChhHHHHHHHHHHh
Q 001852 640 LAAAAKLAVLEEGHQLHGLATKL-----GFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFAR 711 (1004)
Q Consensus 640 l~a~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 711 (1004)
.+.-.+.|+.+.+...++.+.+. ++.....+.......|.-+.++.+|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 67777889999999888877764 3333444444555567777788888888887764 355566665555566
Q ss_pred cCCHHHHHHHHHHHhhccCCCH
Q 001852 712 HGYFQKAIETFDEMLKYVKPDH 733 (1004)
Q Consensus 712 ~g~~~~A~~l~~~m~~~~~pd~ 733 (1004)
.|+..+|++..+.|.+. .|.+
T Consensus 299 lg~l~DAiK~~e~~~~~-~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ-DPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhcc-CCcc
Confidence 78888899998888885 4433
No 204
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.91 E-value=1.6 Score=44.44 Aligned_cols=190 Identities=18% Similarity=0.187 Sum_probs=127.7
Q ss_pred hhHHhHHHhhHHhcCChhhHhhhcCCCC-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-HhHHHHHHH
Q 001852 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPV-----DRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPD-HVTFVSLLS 741 (1004)
Q Consensus 668 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd-~~t~~~ll~ 741 (1004)
..........+...+.+..+...+.... ......+..+...+...++..++++.+...... .++ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDPDLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCcchHHHHHHH
Confidence 4555666677777777777776666543 234456666777777778888888888888774 222 122222333
Q ss_pred -HHhccCCHHHHHHHHHHhHhhcCCCC----CCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 001852 742 -ACNHGGLVDKGLQYYNTMTTEFGVPA----GIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN--DLVWRSLLASSKI 813 (1004)
Q Consensus 742 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~--~~~~~~ll~~~~~ 813 (1004)
++...|.+++|...|+.... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67888888888888888743 333 2233333444456678888888887776 34444 5677777778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHH
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQM 861 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 861 (1004)
.++.+.|...+..+++..|.....+..++..+...|+++++.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 888888889988888888886666677777777667677777655443
No 205
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=3.9 Score=48.06 Aligned_cols=145 Identities=11% Similarity=-0.003 Sum_probs=81.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHH----HHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCC
Q 001852 267 NSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMI----SVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSV 342 (1004)
Q Consensus 267 ~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 342 (1004)
..-+++..+...++.|..+-+.-..+ ..+-..+. +-+-+.|++++|...|-+-... +.| +.+++-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 34456666666677777766554322 22222222 2344678888888877665432 222 2334444444
Q ss_pred CChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCc-chHHHHHHHHHcCCCHHHHHHHHH
Q 001852 343 DNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDS-VSWNSLVASHVQDEKYIDALKIFS 419 (1004)
Q Consensus 343 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~~ 419 (1004)
..+..-..+++.+.+.|+... ..-+.|++.|.|.++.+.-.+..+....-.. .-....+..+.+.+-.++|..+-.
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 455555566777777786543 3346788999999988888887776662111 113344444455555555544433
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.74 E-value=0.044 Score=49.19 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCCCeehhhhHhhhcCCchHHHH
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPS---DDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
.+-.|.++++..|++++|..++++.++-.|+ +....+.++-.+...|++++|..
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555566666666666666666665555 44455555556666666666655
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.69 E-value=0.021 Score=62.24 Aligned_cols=60 Identities=22% Similarity=0.096 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC---eehhhhHhhhcCCchHHHHHHHH
Q 001852 801 DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS---YVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 801 ~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
...|..+..++...|++++|...++++++++|+++.+ |..++.+|+..|+.++|....+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467777777777777777777777777777777644 77777777777777777664333
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.67 E-value=0.067 Score=52.23 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=68.3
Q ss_pred HHhhccC--CCCchhHHHHHHHHHHh-----CCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccC------------
Q 001852 182 RRVFEEM--PVRNVVSWTSLMVAYLD-----NGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTE------------ 242 (1004)
Q Consensus 182 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 242 (1004)
...|+.. ..++..+|..+|..|.+ .|..+-....+..|.+-|+.-|..+|+.||+.+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 35777888888888764 4667777778888888888888888888888875422
Q ss_pred ----ChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCC
Q 001852 243 ----NDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFG 277 (1004)
Q Consensus 243 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 277 (1004)
+.+.|..+++.|...|+-||..++..|++.|++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 22346667777777777777777777777776654
No 209
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=4.4 Score=47.60 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=71.8
Q ss_pred hHHHHHHHccCChhHHHHHhcccCCCChhhHHHHH---HHHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhhhccC
Q 001852 64 NTLINMYFKFGCLGYARYVFDKMGDKNDASWNNTM---SGLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSACDWSG 140 (1004)
Q Consensus 64 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 140 (1004)
.+-++++.+..-++.|..+-..-..+....-+.+. +-+.+.|++++|...|-+-... +.| +.+++-+-...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 45567777777778888776554433222222222 3355789999998887765432 233 23444444444
Q ss_pred cchhhHHHHHHHHhhcCCCCCcchhhhHHHHhhcCCChhhHHHhhccCC
Q 001852 141 FMVSEGIQVHGFSVKVGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMP 189 (1004)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 189 (1004)
.+. .....+..+.+.|+. +...-+.|+++|.|.++.+.-.+..+...
T Consensus 412 ~Ik-nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIK-NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHH-HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 444 445556666677765 34445678889998888887777766654
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.63 E-value=5.6 Score=45.54 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=58.7
Q ss_pred cCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCC----HhhHHHHHHhhcCCCChHHHHHH
Q 001852 377 AGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVN----YVTFTSALAACSDPGFVVQGKII 452 (1004)
Q Consensus 377 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~ 452 (1004)
.|++++|.+++-+|..+|.. |..+.+.|++-...++++.- |-..| ...+..+-...+....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888777643 44455555555555544321 11111 11233333333333344444444
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHH
Q 001852 453 HALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYK 520 (1004)
Q Consensus 453 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 520 (1004)
+..--.. ...+.+|-+..++++-+.+-..+++ |....-.|...+...|..++|.+.|-
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 3322110 1133334444444444444444432 33334445556666666666655553
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.54 E-value=0.099 Score=51.10 Aligned_cols=96 Identities=10% Similarity=0.191 Sum_probs=67.6
Q ss_pred HHHHhhC--CCCCcchHHHHHHHHHhC-----CCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCC-------------
Q 001852 283 RCIFDSM--HVRDTISWNSMISVYSHS-----GLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSV------------- 342 (1004)
Q Consensus 283 ~~~f~~m--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 342 (1004)
...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 455677777777777643 55555666677788888888888888888776432
Q ss_pred ---CChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Q 001852 343 ---DNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAG 378 (1004)
Q Consensus 343 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 378 (1004)
.+-+-|.+++++|...|+-||..++..|++.+.+.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234667788888888888888888888888776544
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=6.8 Score=45.52 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=55.6
Q ss_pred hHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 001852 677 MYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYY 756 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 756 (1004)
-+...|+...|.++-.+..-||-..|---+.+++..+++++-+++-..+. + ++-|.-...+|.+.|+.+||.+|+
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk----s-PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK----S-PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC----C-CCCchhHHHHHHhcccHHHHhhhh
Confidence 34445666666666666655555555555566666666665544444332 1 333444556666666666666665
Q ss_pred HHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 001852 757 NTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 757 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
.+... +.-.+.+|.+.|.+.||.++.
T Consensus 768 prv~~----------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 768 PRVGG----------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hccCC----------hHHHHHHHHHhccHHHHHHHH
Confidence 54421 113456666666666665553
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.40 E-value=2.7 Score=43.43 Aligned_cols=58 Identities=16% Similarity=-0.012 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhH----HHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001852 603 AMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSL----SEGLAAAAKLAVLEEGHQLHGLATKL 662 (1004)
Q Consensus 603 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~ 662 (1004)
.....+.+.|++++|++.|+++... .|+.... ..+..++-+.++.++|...++..++.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455667777777777776653 3332211 11223334445555555555444443
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.22 Score=53.27 Aligned_cols=126 Identities=17% Similarity=0.098 Sum_probs=91.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVEL 819 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~ 819 (1004)
.+.+.+.|++..|..-|++...-... .+.-..+|...+. . .-...+.+|..++.+.+++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-~----~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-A----LKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-H----HHHHHhhHHHHHHHhhhhHHH
Confidence 44567788888888887776542111 0111112222111 1 113356777777788899999
Q ss_pred HHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHH
Q 001852 820 AKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYA 899 (1004)
Q Consensus 820 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 899 (1004)
|++..+++|+++|+|..+..--+.+|...|.++.|....+++.+ ..|..++|..
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~ 329 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARA 329 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHH
Confidence 99999999999999999999999999999999999998777764 2467788888
Q ss_pred HHHHHHHHHHH
Q 001852 900 KLEELKKMIKE 910 (1004)
Q Consensus 900 ~l~~l~~~~~~ 910 (1004)
.|..|..++++
T Consensus 330 el~~l~~k~~~ 340 (397)
T KOG0543|consen 330 ELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHHHH
Confidence 89888887775
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=3.4 Score=44.49 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=136.3
Q ss_pred hHHHHcCChhhHHHHHhcCCCCCHhH-HHHHHH--HHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHH
Q 001852 575 TMYAKCGDLNSSNYIFEGLAEKNSVT-WNAMIA--ANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEE 651 (1004)
Q Consensus 575 ~~y~k~g~~~~A~~~f~~~~~~~~~~-~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 651 (1004)
.++.-.|++++|..+--.+.+-|... +...+. .+--+++.+.|..-|++-+. ..||...- +..-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~s----------k~~~~ 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKS----------KSASM 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhH----------HhHhh
Confidence 44556788888887766665544332 222232 34456788899998988776 34554332 22222
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC-------CChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001852 652 GHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD-------RPRLSWNILISVFARHGYFQKAIETFDE 724 (1004)
Q Consensus 652 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~ 724 (1004)
....+...... .+...|.|.+.+|.+.+.+... ++...|.....+..+.|+.++|+.-.+.
T Consensus 245 ~~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 245 MPKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hHHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 22222222222 2456688999999998887764 2344566777788899999999999888
Q ss_pred HhhccCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 001852 725 MLKYVKPDH-VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLV 803 (1004)
Q Consensus 725 m~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~ 803 (1004)
.++ +.|.- -.|..-..++.-.+.|++|.+.|++..+. ..+.++-.. +.+|..-+++..-+ -
T Consensus 313 Al~-iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~---~~s~e~r~~----------l~~A~~aLkkSkRk----d 374 (486)
T KOG0550|consen 313 ALK-IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL---EKDCEIRRT----------LREAQLALKKSKRK----D 374 (486)
T ss_pred hhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccchHHH----------HHHHHHHHHHhhhh----h
Confidence 876 34422 23333444556678899999999988653 222332222 23444444443322 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 804 ~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
|-.+|+.-+...+.|......+.++...|+-..
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~a 407 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNA 407 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCc
Confidence 666677777778888888888888888887544
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.12 E-value=2.9 Score=42.48 Aligned_cols=189 Identities=21% Similarity=0.199 Sum_probs=120.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC--CC-hhHHHHHHH-HHHhcCCHH
Q 001852 642 AAAKLAVLEEGHQLHGLATKL-GFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD--RP-RLSWNILIS-VFARHGYFQ 716 (1004)
Q Consensus 642 a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g~~~ 716 (1004)
.....+.+..+...+...... ........+..+...+...+..+.+.+.+..... ++ ...+..... .+...|+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (291)
T COG0457 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE 147 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHH
Confidence 333444444444433333321 2223344444555555566666666666665543 11 122333333 678889999
Q ss_pred HHHHHHHHHhhccCC----CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHH
Q 001852 717 KAIETFDEMLKYVKP----DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 717 ~A~~l~~~m~~~~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~ 791 (1004)
+|...|++... ..| ....+......+...+..+++...+...... .+. ....+..+...+...|.+++|...
T Consensus 148 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 148 EALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 99999998866 444 2334444455567788899999988888753 222 356677788888888899999988
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 792 INKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 792 i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
+... ...|+ ...+..+...+...|+.+.+....++.++..|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8776 44554 456666666666667899999999999999997
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.98 E-value=0.095 Score=43.16 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhc---cCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 001852 700 LSWNILISVFARHGYFQKAIETFDEMLKY---VKPD----HVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 700 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
.+++.+...|...|++++|++.|++.++. ..++ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677788888888888888888887754 3322 34666777777788888888887776653
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.97 E-value=7 Score=42.76 Aligned_cols=217 Identities=10% Similarity=0.029 Sum_probs=111.2
Q ss_pred hHHHHHHHH--HhCCCchhHHHHHHHHHHc--CCCC------------ChhhHHHHHHhhcCCCChhhHHHHHHHHHHhc
Q 001852 296 SWNSMISVY--SHSGLCDQSLKCFHWMRHV--GQEI------------NSTTFSTLLSACGSVDNLKWGRGIHGLAVKLA 359 (1004)
Q Consensus 296 ~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 359 (1004)
.|-.+..+. -+.+.+..|++.+..-... +-.| |-.-=+.....+...|.+.+|+.++..++..=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444333 2456677777766655433 2221 11122344556678888889988888877654
Q ss_pred C----CCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHH
Q 001852 360 L----NSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTS 435 (1004)
Q Consensus 360 ~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 435 (1004)
+ .-+..+|+.++-++++.=-++ +-+.+...=..-|--||..|.+.=..-++ -.=..+.|...-+..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFST 228 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHH
Confidence 3 367888888877777642211 11222222233455666666543111111 001122343333333
Q ss_pred HHHhhcC--CCChHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHccCChHHHHHHHhcCC--------CCCeechhhhhH
Q 001852 436 ALAACSD--PGFVVQGKIIHALVITMGLHDNL-IVGNALVSMYAKSGMMSEAKQVFRIMP--------KRDTVTWNALIG 504 (1004)
Q Consensus 436 ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~ 504 (1004)
++....- ...+.--.+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-+.+. +.-+.++..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333221 11222333444444444455543 344455555554 4555544444332 223456777888
Q ss_pred HhhhCCChhHHHHHHHHHHh
Q 001852 505 GHSEKEEPDKALKAYKRMRE 524 (1004)
Q Consensus 505 ~~~~~g~~~~A~~l~~~m~~ 524 (1004)
...+.++..+|-+.+.-+..
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHh
Confidence 88888888888877776654
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.95 Score=45.35 Aligned_cols=173 Identities=14% Similarity=0.130 Sum_probs=113.4
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCC--CChhHH--------HHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHH
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVD--RPRLSW--------NILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSL 739 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~--------~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~l 739 (1004)
+++|...|.-..-+++-...|+.-.. ..+..| +.++..+.-+|.+.-.+.++.+.++..+| +.+....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 56666666666666666666655443 223334 56677777788888999999999987434 77778888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcC----CCCCCchHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHH-Hh
Q 001852 740 LSACNHGGLVDKGLQYYNTMTTEFG----VPAGIEHCVCIIDLLGRSGRLAEAETFINKMPV-TPNDLVWRSLLASS-KI 813 (1004)
Q Consensus 740 l~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~-~p~~~~~~~ll~~~-~~ 813 (1004)
.+.-.+.|+++.|..+|++..+..+ +.-....-..+..++.-+.++.+|..++.+.+. .|...++..==+-| .-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888999999999999997765432 222222222344456667778888888877753 33333332222223 33
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
.|+...|.+..+.+++..|...-.-.++-|
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 488888999999998888876554433333
No 220
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=8.7 Score=44.96 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCC
Q 001852 466 IVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEE 511 (1004)
Q Consensus 466 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 511 (1004)
.++...|+.+.-.|++++|-...-.|...+..-|---+.-+...++
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 3445566666666666666666666655555555555444444444
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.94 E-value=0.63 Score=46.79 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHH
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKY--VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLL 779 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~--~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l 779 (1004)
.....+...|++.+|++.|+++... ..| -......++.++...|++++|...|++..+.|+-.|.. ..+-.++..+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3445556667777777777777765 112 12344456667777777777777777777666655543 1111111111
Q ss_pred H-----------hcCChHHHHHHHHh----CCCCCCHH--------HHH-------HHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 780 G-----------RSGRLAEAETFINK----MPVTPNDL--------VWR-------SLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 780 ~-----------r~g~~~eA~~~i~~----m~~~p~~~--------~~~-------~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
. ..+...+|...++. -|-.|-.. +.. ....-+...|+...|..-++.+++
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 11223344444333 24333211 111 123346678899999999999999
Q ss_pred cCCCCCC---CeehhhhHhhhcCCchHHH
Q 001852 830 LDPSDDS---SYVLYSNVCAATGRWDDVE 855 (1004)
Q Consensus 830 l~p~~~~---~~~~l~~~y~~~g~~~~a~ 855 (1004)
.-|+.+. +...|...|.+.|..+.+.
T Consensus 170 ~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 170 NYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9888655 4567777888888877443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.91 E-value=0.034 Score=45.88 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
.++..+...+...|+.+.|+..+++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777777777777777777777664
No 223
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.88 E-value=0.048 Score=36.35 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+|..++..+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478899999999999999999999999999974
No 224
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.81 E-value=0.069 Score=35.49 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468888999999999999999999999999986
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.77 E-value=0.18 Score=45.70 Aligned_cols=83 Identities=16% Similarity=0.281 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHh--------------HhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC---
Q 001852 733 HVTFVSLLSACNHGGLVDKGLQYYNTM--------------TTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--- 795 (1004)
Q Consensus 733 ~~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--- 795 (1004)
..++..++.++++.|+++....+.++. .....+.|+.....+++..|+..|++..|.++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344445555555555555555444432 112244566666777777777777777777776553
Q ss_pred -CCCCCHHHHHHHHHHHHhcC
Q 001852 796 -PVTPNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 796 -~~~p~~~~~~~ll~~~~~~g 815 (1004)
|++-+..+|..|+.-+...-
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 55545667777777665543
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.74 E-value=4.4 Score=41.13 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHH
Q 001852 700 LSWNILISVFARHGYFQKAIETFDEMLKY--VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCII 776 (1004)
Q Consensus 700 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 776 (1004)
..|-.-+..-.+.|++++|.+.|+.+..+ ..| ...+-..++.|+-+.|++++|+..+++..+.|+-.|+++- ..-+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY-~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY-AYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH-HHHH
Confidence 34444455566788899999999988876 344 4567777788888889999999999888888888888742 1111
Q ss_pred HHHHh------cC-C-------hHHHHHHHHhCC---CCCCHHH-----H-------HHHHHHHHhcCCHHHHHHHHHHH
Q 001852 777 DLLGR------SG-R-------LAEAETFINKMP---VTPNDLV-----W-------RSLLASSKIHGNVELAKKAAEHL 827 (1004)
Q Consensus 777 ~~l~r------~g-~-------~~eA~~~i~~m~---~~p~~~~-----~-------~~ll~~~~~~g~~e~a~~~~~~~ 827 (1004)
.++.. .. + +.+..+++.+-| ..||+.. - .+...-|.++|....|..-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 22211 11 1 223334455555 3444321 1 22334467889999999999999
Q ss_pred HhcCCCCCCC---eehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 828 FELDPSDDSS---YVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 828 ~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
++--|+.+.. +..|-+.|...|..++|.+..+.+...
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9987776654 556667899999999999999988764
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.71 E-value=0.18 Score=47.66 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=70.3
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001852 742 ACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAK 821 (1004)
Q Consensus 742 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~ 821 (1004)
.....|+.+++...++.+...|.=++=..... ...+....+.+.++- ..++..++..+...|+.+.|.
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHH
Confidence 34556777777777777766542221111000 111222222232221 235667777888999999999
Q ss_pred HHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 822 KAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 822 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..+++++.++|-+...|..|..+|...|+..+|.++++.++
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877664
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=6.8 Score=45.56 Aligned_cols=339 Identities=12% Similarity=-0.002 Sum_probs=168.2
Q ss_pred HcCCCCChhhHHH-----HHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCC---CHHHHHHHHhhCCC-
Q 001852 221 REGVCCNENTFAA-----VITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFG---SVKEARCIFDSMHV- 291 (1004)
Q Consensus 221 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~- 291 (1004)
+-|++.+..-|.. +|..+...+.+..|.++-..+...-..- ..++.....-+.+.. +.+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466665554443 3444555556666666555442211111 345555555555442 33344444445554
Q ss_pred -CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCC----CCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHH
Q 001852 292 -RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQ----EINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWV 366 (1004)
Q Consensus 292 -~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 366 (1004)
.+.++|..+.+-.-+.|+.+-|..+++.=...+- -.+-.-+...|.-+...|+.+...+++-++...-. ...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~---~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN---RSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH---HHH
Confidence 4677788888777788888888877764222211 11223344555556666666666666555543310 011
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCCC-CCcchHHHHHHHHHcCCCHHHHHHHHHHh------hhcCCcCCHhhHHHHHHh
Q 001852 367 CNTLLAMYSEAGRSEDAKFVFQEMSE-RDSVSWNSLVASHVQDEKYIDALKIFSNM------LQKQRLVNYVTFTSALAA 439 (1004)
Q Consensus 367 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~a 439 (1004)
+...+ .+...|..++....+ .|..+ +-..|-+..+. +++.-|..- ...|..|+..+ .-.+
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~ 647 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKT---AANA 647 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHH---HHHH
Confidence 11111 122223333332221 11110 11111111111 111111100 01122233222 2223
Q ss_pred hcCCCChHHHH----------HHHHHHH-HhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhh
Q 001852 440 CSDPGFVVQGK----------IIHALVI-TMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSE 508 (1004)
Q Consensus 440 ~~~~~~~~~a~----------~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 508 (1004)
+++........ ++...+. +.|..-...+.+--+.-+..-|+..+|.++-.+.+-||-..|---+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 33332211111 1111111 123223333444455556677899999999999988898888888899999
Q ss_pred CCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHH
Q 001852 509 KEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNY 588 (1004)
Q Consensus 509 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 588 (1004)
.+++++-.++-+.+.. ..-| -..+..+.+.|+.++|.+
T Consensus 728 ~~kweeLekfAkskks------PIGy------------------------------------~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKKS------PIGY------------------------------------LPFVEACLKQGNKDEAKK 765 (829)
T ss_pred hhhHHHHHHHHhccCC------CCCc------------------------------------hhHHHHHHhcccHHHHhh
Confidence 9998887776665542 1222 234455566677778877
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 001852 589 IFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVK 623 (1004)
Q Consensus 589 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 623 (1004)
.+.+...-. -...+|.+.|++.+|.++--+
T Consensus 766 Yiprv~~l~-----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 766 YIPRVGGLQ-----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhccCChH-----HHHHHHHHhccHHHHHHHHHH
Confidence 776665421 456677777777777765443
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.69 E-value=0.22 Score=54.65 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 001852 697 RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH----VTFVSLLSACNHGGLVDKGLQYYNTMTTE 762 (1004)
Q Consensus 697 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 762 (1004)
.+...|+.+..+|...|++++|+..|++.++ +.||. .+|..+..+|.+.|++++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE-LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999998 57764 35899999999999999999999998764
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.49 Score=48.89 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=79.5
Q ss_pred CC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHh-cC--ChHHHHHHHHhC-CCCCCHH-H
Q 001852 730 KP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGR-SG--RLAEAETFINKM-PVTPNDL-V 803 (1004)
Q Consensus 730 ~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~g--~~~eA~~~i~~m-~~~p~~~-~ 803 (1004)
.| |...|..|..+|...|+.+.|...|....+.- .++++.+..+...|.. +| ...+|.++++++ ...|+.. .
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45 78899999999999999999999999886532 2344666667766543 23 346788899887 5677655 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 804 ~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
..-|.-.+...|++..|...++.++++.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 444555688899999999999999999887765
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.59 E-value=0.12 Score=58.30 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=90.0
Q ss_pred HHHhcCCHHHHHHHHH--HHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 708 VFARHGYFQKAIETFD--EMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 708 ~~~~~g~~~~A~~l~~--~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
.....|+++++.++.+ ++...++ ..-...++.-+.+.|..+.|+++-..-..+ -++-...|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 3346788888877775 2222233 333667777788899999999876554433 3677789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 786 AEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 786 ~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
+.|.+..++.+ +...|..|......+||++.|+.+++++- -+..|+-+|...|+-+.-.++-+.-..+
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999987764 77899999999999999999999999863 4677888999999987776666555544
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=94.17 E-value=0.64 Score=51.25 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHhhc--cCCCH-hHHHHHHHHHhc---------cCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHH
Q 001852 714 YFQKAIETFDEMLKY--VKPDH-VTFVSLLSACNH---------GGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLG 780 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~--~~pd~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~ 780 (1004)
..+.|+.+|.+.... ..|+- ..|..+...+.. .....+|.++-++..+ +.| |......+..+++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 346788888888832 56643 344433332211 2234566666666553 333 4455555666667
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhH--hhhcCCchHHHH
Q 001852 781 RSGRLAEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNV--CAATGRWDDVEN 856 (1004)
Q Consensus 781 r~g~~~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~ 856 (1004)
-.|+++.|..++++. .+.||. .+|......+.-.|+.+.|.+.++++++++|...++-++--++ |.. ...++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 777899999888887 577874 4787777788888999999999999999999887765544444 544 44566666
Q ss_pred HHH
Q 001852 857 VRR 859 (1004)
Q Consensus 857 ~~~ 859 (1004)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 543
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.73 E-value=0.22 Score=52.70 Aligned_cols=124 Identities=13% Similarity=0.043 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHH---hHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-----CCCC---CH
Q 001852 734 VTFVSLLSACNHGGLVDKGLQYYNT---MTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-----PVTP---ND 801 (1004)
Q Consensus 734 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-----~~~p---~~ 801 (1004)
..|..|.+.|.-.|++++|+..-+. +.++||..... ..|+.+.+++.=.|+++.|.+.++.. .+.. .+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666666667778888766543 23345554432 55666777777778888887776653 1111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--CCCCCeehhhhHhhhcCCchHHHHH
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELD----P--SDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~----p--~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
..-.+|.+.|....+++.|+....+-+.+. . ...-++-.|+|.|...|.-++|...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345677777777777888877776655532 1 1223566778888888887777653
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.71 E-value=0.25 Score=43.62 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----CCeehhhhHhhhcCCc
Q 001852 778 LLGRSGRLAEAETFINKM-PVT-PNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD----SSYVLYSNVCAATGRW 851 (1004)
Q Consensus 778 ~l~r~g~~~eA~~~i~~m-~~~-p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~ 851 (1004)
++..+|++++|++.|.+. .+- .++++|+.-..+++.+|+.+.|..-.++++++.-+.. ..|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666555543 222 2345566666666666666666666666666533221 1455666666666666
Q ss_pred hHHHHHHHH
Q 001852 852 DDVENVRRQ 860 (1004)
Q Consensus 852 ~~a~~~~~~ 860 (1004)
++|..=.+.
T Consensus 132 d~AR~DFe~ 140 (175)
T KOG4555|consen 132 DAARADFEA 140 (175)
T ss_pred HHHHHhHHH
Confidence 666554443
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.69 E-value=6.6 Score=39.42 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=9.2
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 001852 607 ANALHGQGEEVLKLLVKMRH 626 (1004)
Q Consensus 607 ~~~~~g~~~~A~~l~~~m~~ 626 (1004)
.+.+.|++++|++.|+++..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~ 33 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLID 33 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 33444555555555555444
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.69 E-value=3 Score=46.28 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCC--CHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKP--DHVTFVSLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
+..+..+.|+.+||++.|++|.+..++ +......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445555667777777777777654333 1223445666666666666666666554
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.66 E-value=6 Score=48.48 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=88.5
Q ss_pred CChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhhcCCcchhhcccchhhhh
Q 001852 479 GMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHI 558 (1004)
Q Consensus 479 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~ 558 (1004)
+++++|..-+.++. ...|.-.+.---++|.+.+|+.++ +|+..++..+..+++.. +
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h-------------L 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH-------------L 949 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH-------------H
Confidence 45566665555544 223444444444566666666553 56666666655555433 1
Q ss_pred hhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhh--H
Q 001852 559 VLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFS--L 636 (1004)
Q Consensus 559 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~ 636 (1004)
.+ ...++--.-+|.++|+.++|.+ +|...|++.+|+.+-.+|.. .-|... -
T Consensus 950 ~~------~~~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 950 RE------ELMSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred HH------hccccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 11 1122334457888888888855 45566778888877777642 112221 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCCh
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPR 699 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 699 (1004)
..+.+-+...+..-+|-++...-.. . ...-+..|++.-.+++|.++-......|.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 3444555555555555444433221 1 23346677888888888877666554443
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.66 E-value=0.39 Score=45.35 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCCch
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTT----EFGVPAGIEH 771 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 771 (1004)
....++..+...|++++|+.+.+++....+-|...+..++.++...|+..+|++.|+++.+ +.|++|+...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4456777788899999999999999985333888999999999999999999999988753 5688887654
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.61 E-value=0.8 Score=51.67 Aligned_cols=106 Identities=25% Similarity=0.274 Sum_probs=64.5
Q ss_pred HhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
.++..++|+++.|.+.-++.. +...|..|.......|+.+-|++.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHH
Confidence 455667888888888887766 566899999988899999999988888764 5556666666777655554
Q ss_pred HHHHhHhhcCCCCCC--------chHHHHHHHHHhcCChHHHHHHH
Q 001852 755 YYNTMTTEFGVPAGI--------EHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~--------~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
+-+..... |. .+. .-+..-+++|.+.|++.+|.-+-
T Consensus 395 l~~~a~~~-~~-~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A 438 (443)
T PF04053_consen 395 LAKIAEER-GD-INIAFQAALLLGDVEECVDLLIETGRLPEAALFA 438 (443)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHc-cC-HHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHH
Confidence 44444321 11 010 00112346666666666665443
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.30 E-value=3.4 Score=38.49 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=71.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHH
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQ 716 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 716 (1004)
..++..+...+.......+++.+.+.+. .++...+.++.+|++.+ .+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC--------------------------------HH
Confidence 3444555555555666666666555542 45556666666665432 12
Q ss_pred HHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhc-CChHHHHHHHHhC
Q 001852 717 KAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS-GRLAEAETFINKM 795 (1004)
Q Consensus 717 ~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-g~~~eA~~~i~~m 795 (1004)
+.++.++. .++......++..|...+.++++..++..+.. |...++++... ++.+.|.+++.+-
T Consensus 58 ~ll~~l~~-----~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~ 122 (140)
T smart00299 58 KEIERLDN-----KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ 122 (140)
T ss_pred HHHHHHHh-----ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC
Confidence 23333331 22333344577778888888888887777632 23344444444 7788888888762
Q ss_pred CCCCCHHHHHHHHHHHH
Q 001852 796 PVTPNDLVWRSLLASSK 812 (1004)
Q Consensus 796 ~~~p~~~~~~~ll~~~~ 812 (1004)
.++..|..++..|.
T Consensus 123 ---~~~~lw~~~~~~~l 136 (140)
T smart00299 123 ---NNPELWAEVLKALL 136 (140)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 35567877776654
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.23 E-value=1.4 Score=39.29 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=79.6
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 710 ARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
...|..++..++..+.... .+..-++-++.--..+-+-+--.+.+++.-+.|.+.|-. ....+|.+|.+.|...|=.
T Consensus 13 ildG~V~qGveii~k~v~S--sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS--SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH--S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCc--CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHHHH
Confidence 3457788888888887764 122222222222222223344455556655545444432 2334667777777655422
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCc
Q 001852 790 TFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIK 867 (1004)
Q Consensus 790 ~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 867 (1004)
.--|.+...+|+-|.-.+++..+++.+..+|+..+-+++.|.+.|...++.++.++.-++|++
T Consensus 90 ---------------D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 ---------------DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 223556678888999999999998877778888999999999999999999988888888875
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.18 E-value=0.6 Score=47.61 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPD---HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCII 776 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv 776 (1004)
.|+.-+.. .+.|++.+|...|..-++..+-+ ...+.-|+.++...|++++|..+|..+.++|+-.|.. +.+--++
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655444 46777999999999999862222 1245558899999999999999999999999888876 8888888
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 001852 777 DLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~m 795 (1004)
..+++.|+.++|...+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 9999999999998888776
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=93.10 E-value=0.57 Score=51.62 Aligned_cols=115 Identities=7% Similarity=0.040 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHh---------cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 001852 748 LVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGR---------SGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHG 815 (1004)
Q Consensus 748 ~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r---------~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g 815 (1004)
..++|+.+|.+....-.++|+- ..|.++..++.. .....+|.++.++. .+.|+ +.+...+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3578888999988555777764 667666654431 22345666666665 45544 556666766677788
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH-Hh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ-MG 862 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~-m~ 862 (1004)
+.+.|...++++++++|+.+..+...+++..-.|+.++|.+--+. ++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999885443 44
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=1.2 Score=45.93 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=79.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcC
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLA---SSKIHG 815 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~---~~~~~g 815 (1004)
-.......|+..+|...|+..... .+-+.+.-..|+++|...|+.++|..++..+|.+-....|..|-. ......
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 344556677888888888877653 222346666778888888888888888888876655444433211 111112
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH-HHHHHh
Q 001852 816 NVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN-VRRQMG 862 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~ 862 (1004)
+.... ..+++-+.-+|+|...-..|+..|...|+.++|.+ +...|+
T Consensus 218 ~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 218 ATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred cCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22211 23445567799999999999999999999999977 455554
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.03 E-value=4 Score=37.61 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKY--VKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDL 778 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~--~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 778 (1004)
+-.-.....+.|++++|.+.|+.+... ..| ....-..++.++...|++++|...+++.++.+.-.|++. |......
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRG 91 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHH
Confidence 333445556788999999999999887 333 445677788899999999999999999988777777653 3332222
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 001852 779 LGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDD 835 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~ 835 (1004)
|+- ++.....+..++ ..=+-.+.+..|...++++++.-|++.
T Consensus 92 L~~---~~~~~~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 92 LSY---YEQDEGSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHH---HHHhhhHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 221 111122222222 111223446688888999999888753
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.01 E-value=0.87 Score=50.23 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=115.9
Q ss_pred hcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhh----cCCCCCCchHHHHHHHHHhcCChH
Q 001852 711 RHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTE----FGVPAGIEHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 711 ~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~~p~~~~y~~lv~~l~r~g~~~ 786 (1004)
+..+.+.-+++-++.++ +.||-.+-..+ -|--.+.-+.|+.++|++..+. ++......| .|.
T Consensus 180 RERnp~aRIkaA~eALe-i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~----------~g~-- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE-INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQH----------HGH-- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH-hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHHhhchhhhhhc----------ccc--
Confidence 44566677777777777 57766554433 3444566688888888887652 111110010 111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCCCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 787 EAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS--DDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 787 eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
..+.+..-...|-..+=..|.-.+++.|+.++|++.++.+++..|. +-+.+..|.+.+-..+++.|+..+..+-.+-
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1111111123333444556666777888888888888888877664 3446777777888888888887776665443
Q ss_pred CCccCCcccEEEeCCeEEEE-ecCCCCCCC-------hHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhhhhhh-hh
Q 001852 865 KIKKKPACSWVKSKDGVNSF-GMGDHSHPD-------TEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNL-WN 935 (1004)
Q Consensus 865 ~~~k~~g~s~i~~~~~~~~f-~~~d~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 935 (1004)
...|....+|-.. +-.| .+||+..|+ +......++-+.+-++..-+||.==.-+-.+.- --|+++ ..
T Consensus 325 ~lpkSAti~YTaA---LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil-PPehilkrG 400 (539)
T PF04184_consen 325 SLPKSATICYTAA---LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL-PPEHILKRG 400 (539)
T ss_pred cCCchHHHHHHHH---HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC-ChHHhcCCC
Confidence 3333332222110 0001 124443333 223444667777777777777741100011100 012232 23
Q ss_pred hHHHHHHHHhhc
Q 001852 936 HSERLALAFGLI 947 (1004)
Q Consensus 936 hse~la~~~~~~ 947 (1004)
-||-+|.||--+
T Consensus 401 DSEAiaYAf~hL 412 (539)
T PF04184_consen 401 DSEAIAYAFFHL 412 (539)
T ss_pred cHHHHHHHHHHH
Confidence 588888877654
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.36 E-value=5.6 Score=40.43 Aligned_cols=125 Identities=12% Similarity=0.089 Sum_probs=86.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHH--HHHHHHHHH
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM----PVTPNDL--VWRSLLASS 811 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m----~~~p~~~--~~~~ll~~~ 811 (1004)
-+..-...|++++|.+.|+.+...|...|-. ..-.-++-++-+.|++++|...+++. |..||.. .|.-.+.-+
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 4444567899999999999999988777754 45555667788999999999877664 8888764 333333322
Q ss_pred Hh----cCC---HHHHHHHHHHHHhcCCCCC-----------------CCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 812 KI----HGN---VELAKKAAEHLFELDPSDD-----------------SSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 812 ~~----~g~---~e~a~~~~~~~~~l~p~~~-----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.. .+| ...|...++.+++--|+.. +.-...++.|.+.|.|..|..=.+.|.+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 22 123 4556666777777888752 2233456789999999998876555554
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=1.5 Score=47.28 Aligned_cols=137 Identities=12% Similarity=0.134 Sum_probs=93.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCCh
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 785 (1004)
.+.|.+.|++..|...|++....+. + ...-..++...... .....+..+.-++.+.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~-~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE-Y-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh-c-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 4567888999999999998776311 0 00001122221111 1122344566677788888
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH-HHHHHHHh
Q 001852 786 AEAETFINKM-PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV-ENVRRQMG 862 (1004)
Q Consensus 786 ~eA~~~i~~m-~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 862 (1004)
.+|++..++. ...|+. -..--=..+|...|+++.|+..++++++++|+|-.+...|+-+-.+..+..+. .++++.|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887776 455543 35556677888899999999999999999999988888888887777766665 66888886
Q ss_pred h
Q 001852 863 W 863 (1004)
Q Consensus 863 ~ 863 (1004)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 5
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.24 E-value=1.1 Score=39.77 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 001852 706 ISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTE 762 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 762 (1004)
..+.+..|+.+.|++.|.+.+...+.+...|+.-..++.-.|+.++|++-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 346677888888888888888754447788888888888888888888888877664
No 250
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.22 E-value=1.1 Score=40.77 Aligned_cols=49 Identities=10% Similarity=0.273 Sum_probs=42.8
Q ss_pred cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHH
Q 001852 729 VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIID 777 (1004)
Q Consensus 729 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 777 (1004)
..|+..+..+++.+++..|++..|+++.+...+.|+++-....+..|..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6788999999999999999999999999999999998777777776654
No 251
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.16 E-value=4.4 Score=43.44 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHhHHHhhHHhcCChhhHhhhcCCCC-------CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cC-----CCHh
Q 001852 670 VTNAAMDMYGKCGEIGDVLRIAPQPV-------DR--PRLSWNILISVFARHGYFQKAIETFDEMLKY-VK-----PDHV 734 (1004)
Q Consensus 670 ~~~~li~~y~k~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~-----pd~~ 734 (1004)
.|..|.+.|.-.|+++.|+..-+.-. .+ .-.++..+..++.-.|+++.|.+.|+.-... +. ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455556666677777665543211 11 1235566777777777777777777765533 11 1223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIH 814 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~ 814 (1004)
...+|.++|--...+++|+.++.+-... |.++=+.. -....+.+|..++...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaI-------------------------AqeL~Dri---Ge~RacwSLgna~~al 328 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAI-------------------------AQELEDRI---GELRACWSLGNAFNAL 328 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHhh---hhHHHHHHHHHHHHhh
Confidence 4445666666666677777766543210 11111110 1123455666666666
Q ss_pred CCHHHHHHHHHHHHhc--CCCC----CCCeehhhhHhhhcCC
Q 001852 815 GNVELAKKAAEHLFEL--DPSD----DSSYVLYSNVCAATGR 850 (1004)
Q Consensus 815 g~~e~a~~~~~~~~~l--~p~~----~~~~~~l~~~y~~~g~ 850 (1004)
|+-+.|...+++.+++ +-.| ....+.|+++-...|.
T Consensus 329 g~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 7777776666666653 1122 2234455555444444
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.11 E-value=11 Score=39.96 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=58.1
Q ss_pred HHcCChhhHHHHHhcCCCC----C--------HhHHHHHHHHHHhcCChHHHHHHHHHhhhc--------CCCCCh----
Q 001852 578 AKCGDLNSSNYIFEGLAEK----N--------SVTWNAMIAANALHGQGEEVLKLLVKMRHT--------GVYFDR---- 633 (1004)
Q Consensus 578 ~k~g~~~~A~~~f~~~~~~----~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~---- 633 (1004)
.+.|+.+.|..++.+.... + .+.||.-.+.+.+..++++|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3567777777777665431 1 234554444444444888887777765432 122222
Q ss_pred -hhHHHHHHHHhhhhh---HHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCC
Q 001852 634 -FSLSEGLAAAAKLAV---LEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV 695 (1004)
Q Consensus 634 -~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 695 (1004)
.++..+..++-..+. .+.+..+.+.+.+.. +..+.++---+....+.++.+++.+++.+|.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 233344444444433 333444444443322 2223333333444445566666666666554
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.93 E-value=1.1 Score=51.43 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHhhccCCCHhHHHHH-HHHHhccCCHHHHHHHHHHhHhhcCCCCCCch--HHHHHHHHHhcCChHHHH
Q 001852 713 GYFQKAIETFDEMLKYVKPDHVTFVSL-LSACNHGGLVDKGLQYYNTMTTEFGVPAGIEH--CVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 713 g~~~~A~~l~~~m~~~~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--y~~lv~~l~r~g~~~eA~ 789 (1004)
.+.+.|.++++++.+. -|+...|... ...+...|++++|++.|+.+...-.--|...| |--+...+.-.+++++|.
T Consensus 247 ~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4566677777777764 5555544432 24455667777777777765431111222322 222445566677777777
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHH-hcCCH-------HHHHHHHHHHHhcC
Q 001852 790 TFINKMPV--TPNDLVWRSLLASSK-IHGNV-------ELAKKAAEHLFELD 831 (1004)
Q Consensus 790 ~~i~~m~~--~p~~~~~~~ll~~~~-~~g~~-------e~a~~~~~~~~~l~ 831 (1004)
+.+..+.- .-...+|.-+.++|. ..|+. +.|...++++-.+-
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 77766632 222334444444443 34666 55555555555543
No 254
>PRK12798 chemotaxis protein; Reviewed
Probab=91.91 E-value=22 Score=39.00 Aligned_cols=208 Identities=15% Similarity=0.114 Sum_probs=135.7
Q ss_pred cCChhhHhhhcCCCCC----CChhHHHHHHHHHH-hcCCHHHHHHHHHHHhhccCCC----HhHHHHHHHHHhccCCHHH
Q 001852 681 CGEIGDVLRIAPQPVD----RPRLSWNILISVFA-RHGYFQKAIETFDEMLKYVKPD----HVTFVSLLSACNHGGLVDK 751 (1004)
Q Consensus 681 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~~~pd----~~t~~~ll~a~~~~g~~~~ 751 (1004)
.|+.++|.+.+..+.. +....+-+|+.+-. ...+..+|+++|++..-. -|- +....--+......|+.++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl-aPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL-APGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh-CCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 5888888888888764 33456667776554 456899999999998763 453 2344444556789999999
Q ss_pred HHHHHHHhHhhcCCCCCCchH-HHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001852 752 GLQYYNTMTTEFGVPAGIEHC-VCIIDLLGRSG---RLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHL 827 (1004)
Q Consensus 752 a~~~~~~m~~~~~~~p~~~~y-~~lv~~l~r~g---~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~ 827 (1004)
+..+-.+..+.|...|-...+ .-++.++.+.+ +.+.-.+++..|+-.-...+|..+...-.+.|+.+.|..+.+++
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 999988888888888866433 33445554443 23333344444432222448888888888999999999999999
Q ss_pred HhcCCCCCCCeehhhhHhhhcCC--chHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 001852 828 FELDPSDDSSYVLYSNVCAATGR--WDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHSHPDTEHIYAKLEELK 905 (1004)
Q Consensus 828 ~~l~p~~~~~~~~l~~~y~~~g~--~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 905 (1004)
+.+.+ ..+.-...+++|...-+ .+++....+.+..- ..++.+|.-..+.+.-..+-
T Consensus 284 ~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I---------------------~~~~L~~~Dr~Ll~AA~~va 341 (421)
T PRK12798 284 LKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI---------------------DRDKLSERDRALLEAARSVA 341 (421)
T ss_pred HHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC---------------------ChhhCChhhHHHHHHHHHHH
Confidence 99984 45556677788876543 22344444444321 12345566666666666666
Q ss_pred HHHHHc
Q 001852 906 KMIKEA 911 (1004)
Q Consensus 906 ~~~~~~ 911 (1004)
.++++.
T Consensus 342 ~~V~~~ 347 (421)
T PRK12798 342 RQVRRA 347 (421)
T ss_pred HHHhcC
Confidence 666543
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.90 E-value=0.64 Score=42.67 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=45.0
Q ss_pred HhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 780 GRSGRLAEAETFINKM----PVTPND-LVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m----~~~p~~-~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
.+.|++++|.+.++.+ |..|-. .+-..|+.++...|+++.|...+++.++|.|.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3567777777777665 444432 356668889999999999999999999999998873
No 256
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.90 E-value=17 Score=44.91 Aligned_cols=109 Identities=11% Similarity=0.029 Sum_probs=51.6
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhH--HHHHHHHHhccCC
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVT--FVSLLSACNHGGL 748 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t--~~~ll~a~~~~g~ 748 (1004)
|.+..+.+...+.+++|.-.|+...+- .--+.+|...|++++|+.+..++.. .-|.+. -..|.+-+...|+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHccc
Confidence 333444444455555555444443221 1123445555555555555555432 112222 1234555555666
Q ss_pred HHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC
Q 001852 749 VDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM 795 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m 795 (1004)
.-+|-++......+ +.--+.+|+++..+++|.......
T Consensus 1015 h~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 55555554443322 223455666666666666665443
No 257
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=18 Score=42.50 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHH
Q 001852 366 VCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYI 412 (1004)
Q Consensus 366 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 412 (1004)
++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44555666666666666666666666666666665555555555443
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.51 E-value=25 Score=38.68 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=51.9
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 789 ETFINKMPVTP----NDLVWRSLLAS--SKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 789 ~~~i~~m~~~p----~~~~~~~ll~~--~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
++++++..+.| +..+-+-|..| ...+|++.++.-...=+.+..| .+.+|.++|-......+++||-...+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45555554443 23355666666 4678888888888888888888 777888888888888888888877664
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.38 E-value=1.6 Score=45.86 Aligned_cols=129 Identities=19% Similarity=0.140 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHh---hcCCCCCCchH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKY--VKPD----HVTFVSLLSACNHGGLVDKGLQYYNTMTT---EFGVPAGIEHC 772 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~y 772 (1004)
.-+|..++.-.+.++++++.|+...+- ...| -..+.+|.+.+....++++|..+.....+ .+++.-...-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344667777778899999999998865 2223 24788999999999999999988776533 34544433334
Q ss_pred HH-----HHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 773 VC-----IIDLLGRSGRLAEAETFINKM-------PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 773 ~~-----lv~~l~r~g~~~eA~~~i~~m-------~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
-+ |.-.|...|++-+|.+.-++. ...|- ......+...|+..|+.|.|..-||.+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 44 444566778777777766553 22222 235677888899999999999999998765
No 260
>PRK15331 chaperone protein SicA; Provisional
Probab=91.35 E-value=3.6 Score=38.84 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=53.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChH
Q 001852 708 VFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLA 786 (1004)
Q Consensus 708 ~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~ 786 (1004)
-+-+.|++++|..+|.-+... .| |..-|.+|...|-..|.+++|+..|.....--.-.|.+..| +..+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~--agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF--TGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch--HHHHHHHhCCHH
Confidence 344667777777777776653 44 44444555555566677777777777654432334444333 356666677777
Q ss_pred HHHHHHHhCCCCCC
Q 001852 787 EAETFINKMPVTPN 800 (1004)
Q Consensus 787 eA~~~i~~m~~~p~ 800 (1004)
+|++-++.....|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77776665533443
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.09 E-value=0.36 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.+|..+...+...|+.+.|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367778888899999999999999999999953
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=4.6 Score=41.78 Aligned_cols=156 Identities=14% Similarity=0.105 Sum_probs=103.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCC
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGR 784 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 784 (1004)
........|+..+|..+|.......+-+...-..+..++...|++++|..++..+-.+... ........-++++.++..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhc
Confidence 3445678899999999999999863335556667888999999999999999987432110 011112335678888888
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCCCeehhhhHhhhcCCchHH-HHHHHH
Q 001852 785 LAEAETFINKMPVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFEL--DPSDDSSYVLYSNVCAATGRWDDV-ENVRRQ 860 (1004)
Q Consensus 785 ~~eA~~~i~~m~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~ 860 (1004)
..+...+.....-.|+ ...--.|...+...|+.|.|..-+=.++.. .-+|...--.|-.++..-|.-+.+ .+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 8888888888766674 445666777788889998876655555553 234455555666666666644443 334444
Q ss_pred H
Q 001852 861 M 861 (1004)
Q Consensus 861 m 861 (1004)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.05 E-value=1.4 Score=44.56 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=71.5
Q ss_pred hhHHHhhccCC--CCchhHHHHHHHHHHhC-----CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCCh-------
Q 001852 179 NKARRVFEEMP--VRNVVSWTSLMVAYLDN-----GSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTEND------- 244 (1004)
Q Consensus 179 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~------- 244 (1004)
-..++.|...+ ++|-.+|-+++.-+... +..+-....++.|.+.|+.-|..+|..||..+-+..-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 68888898888887653 55666667788899999999999999999887543221
Q ss_pred ---------hhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCC
Q 001852 245 ---------LLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGS 278 (1004)
Q Consensus 245 ---------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 278 (1004)
.-+..++++|..+|+.||..+-..|+++|++.+.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2255667777777777777777777777766553
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.78 E-value=20 Score=38.11 Aligned_cols=190 Identities=12% Similarity=0.070 Sum_probs=116.2
Q ss_pred HhHHhhHHHHcCChhhHHHHH-------hcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHhhh-cCCCCCh---hhH
Q 001852 570 QNSLITMYAKCGDLNSSNYIF-------EGLAEK--NSVTWNAMIAANALHGQGEEVLKLLVKMRH-TGVYFDR---FSL 636 (1004)
Q Consensus 570 ~~~Li~~y~k~g~~~~A~~~f-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~---~t~ 636 (1004)
+..+.++.++.|.+++++..- .+..+. -..+|-.+..++.+.-++.+++.+-+--.. .|..|.. ...
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 445556666777766654432 111111 134566666666666666666665443322 2333421 222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCC-----CCChhHHhHHHhhHHhcCChhhHhhhcCCC-------CCCChh----
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGF-----DLDPFVTNAAMDMYGKCGEIGDVLRIAPQP-------VDRPRL---- 700 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~k~g~~~~A~~~~~~~-------~~~~~~---- 700 (1004)
.++-.|....+.++.+.+.|+...+..- -....++.+|...|++..++++|.-...+. .-.|..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3344566777788999888887665321 224567889999999999999876554433 223432
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhHHH----HHHHHHhccCCHHHHHHHHHHh
Q 001852 701 --SWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVTFV----SLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 701 --~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t~~----~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
+.--|..++...|....|.+..++..+. ..-|..++. .+.+.|...|+.|.|+.-|++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2234567888889888888888887765 444655443 5667778888888887776655
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=3 Score=43.43 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=86.2
Q ss_pred cCChhhHhhhcCCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHH----HHHHhccCCHHHHH
Q 001852 681 CGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSL----LSACNHGGLVDKGL 753 (1004)
Q Consensus 681 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~l----l~a~~~~g~~~~a~ 753 (1004)
.|+..+|...++++.+ .|..+|+--=.+|.-.|+-+.-...++++...-.||...|..+ .-++...|.+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4666666666666553 4667777777777777777777777777766545555433322 22344677777777
Q ss_pred HHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh-cCCHHHHHHHH
Q 001852 754 QYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKMPVTPN-------DLVWRSLLASSKI-HGNVELAKKAA 824 (1004)
Q Consensus 754 ~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~-------~~~~~~ll~~~~~-~g~~e~a~~~~ 824 (1004)
+.-++..+ ++| +.-.--.....+.-.|++.|+.+|..+-...-+ ..-|.+- .|.+ .+.+|.|+.++
T Consensus 196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A--l~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA--LFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH--HhhhcccchhHHHHHH
Confidence 76666543 333 222223455666677788888887766532111 1122221 1333 35777777777
Q ss_pred HHHHh--cCCCCCC
Q 001852 825 EHLFE--LDPSDDS 836 (1004)
Q Consensus 825 ~~~~~--l~p~~~~ 836 (1004)
++-+- ++.+|+.
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 65433 4555543
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.40 E-value=2.9 Score=42.80 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH-HHHHHHH
Q 001852 735 TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGRSGRLAEAETFINKM----PVTPND-LVWRSLL 808 (1004)
Q Consensus 735 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~i~~m----~~~p~~-~~~~~ll 808 (1004)
.|..- -.+...|++.+|...|..-++.|.-.+ ....+--|...+.+.|++++|...+..+ |-.|-+ ....-|.
T Consensus 144 ~Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34433 345567889999999999998775444 2345555788888899999888877655 544443 3555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 809 ASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 809 ~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
-+....|+.+.|...++++++--|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6677788999999999999888887654
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.93 E-value=9.1 Score=35.61 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHH
Q 001852 444 GFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRM 522 (1004)
Q Consensus 444 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (1004)
+.......++..+.+.+ ..+....+.++..|++.+ .++..+.+.. ..+......++..|.+.+.++++.-++.++
T Consensus 21 ~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 21 NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 34444444444444444 245667777888887653 3444455542 233344444666666667777777666665
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.26 E-value=0.32 Score=45.74 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=34.5
Q ss_pred hhcccchhhhhhhhcccCchhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 001852 548 LIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVK 623 (1004)
Q Consensus 548 ~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 623 (1004)
.....++...+.+.+-..+..+.+.|+.+|++.++.+...++++.... .-...++..|.+.|.+++|.-++.+
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 23 PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSK 95 (143)
T ss_dssp GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHH
Confidence 333334444444333334555666777777777666666666553222 2223334444444444444444433
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.14 E-value=2.7 Score=42.73 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=74.7
Q ss_pred hHHHHHhcCC--CCCcchHHHHHHHHHcC-----CCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCC-----------
Q 001852 382 DAKFVFQEMS--ERDSVSWNSLVASHVQD-----EKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDP----------- 443 (1004)
Q Consensus 382 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------- 443 (1004)
..++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||...-+.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456676666 67888888888877654 44555666778888899999999999999877553
Q ss_pred -----CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHccCCh
Q 001852 444 -----GFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMM 481 (1004)
Q Consensus 444 -----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 481 (1004)
..-+-+..++++|..+|+.||-.+-..|++.+.+.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23345677888888888888888888888888776653
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.85 E-value=5.2 Score=46.00 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=34.2
Q ss_pred ChhhHhhhcCCCCC--CChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhc---cC-CCHhHHHHHHHHHhccCCHHHHHHH
Q 001852 683 EIGDVLRIAPQPVD--RPRLSWNILI-SVFARHGYFQKAIETFDEMLKY---VK-PDHVTFVSLLSACNHGGLVDKGLQY 755 (1004)
Q Consensus 683 ~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~---~~-pd~~t~~~ll~a~~~~g~~~~a~~~ 755 (1004)
..+.|.++++.+.. |+...|.-+- ..+...|+.++|++.|++.... .+ -....+.-+...+.-.++|++|.++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34444444444443 4444333322 2233445555555555544321 11 1233333444444445555555555
Q ss_pred HHHhHh
Q 001852 756 YNTMTT 761 (1004)
Q Consensus 756 ~~~m~~ 761 (1004)
|..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555544
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.94 E-value=0.85 Score=30.80 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
+|..|...|...|+.+.|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888888888888888886654
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.90 E-value=31 Score=38.03 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcc-CC---CHhHHHHHHHHHhccCCHHHHHHHHHHhHhh-cCCCCCCchH
Q 001852 698 PRLSWNILISVFARHGYFQKAIETFDEMLKYV-KP---DHVTFVSLLSACNHGGLVDKGLQYYNTMTTE-FGVPAGIEHC 772 (1004)
Q Consensus 698 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~y 772 (1004)
...+|..++..+.++|+++.|...+.++.... .+ +......-+...-..|+-++|+..++...+. ..-.......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777777788888888887777776531 11 2223333445556667777777777666552 1111011111
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-C----CCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCCCeehh
Q 001852 773 VCIIDLLGRSGRLAEAETFINKMP-V----TPNDLVWRSLLASSKIH------GNVELAKKAAEHLFELDPSDDSSYVLY 841 (1004)
Q Consensus 773 ~~lv~~l~r~g~~~eA~~~i~~m~-~----~p~~~~~~~ll~~~~~~------g~~e~a~~~~~~~~~l~p~~~~~~~~l 841 (1004)
..+...+ +. .......-. . ..-..++..+..-+... ++.+.+...++++.+++|.....+..+
T Consensus 225 ~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 225 AELKSGL-----LE-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHhhcc-----cc-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 1110000 00 000000000 0 00012343444444444 889999999999999999888877777
Q ss_pred hhHhh
Q 001852 842 SNVCA 846 (1004)
Q Consensus 842 ~~~y~ 846 (1004)
+..+.
T Consensus 299 a~~~~ 303 (352)
T PF02259_consen 299 ALFND 303 (352)
T ss_pred HHHHH
Confidence 77664
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.78 E-value=6.5 Score=38.54 Aligned_cols=178 Identities=14% Similarity=0.080 Sum_probs=108.0
Q ss_pred HhcCChhhHhhhcCCCC--CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHH
Q 001852 679 GKCGEIGDVLRIAPQPV--DRP-RLSWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 679 ~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
-..|-..-|+-=|.+.. .|+ +..+|-+.--+...|+++.|.+.|+...+. .| ...++..-.-++--.|++.-|.+
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcchHHHhccceeeeecCchHhhHH
Confidence 33444455555555443 233 356787777788899999999999998884 55 55666666667778889998888
Q ss_pred HHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 755 YYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
-|-..-+ -.|+-..-+...-+-.+.-+..+|..-+.+--..-|..-|+.-+-.+..-.=-+ +.+++++.+-..++
T Consensus 155 d~~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 7666543 344322222222233345566677754433223445556776665554322111 12233333322222
Q ss_pred -------CCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 835 -------DSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 835 -------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
..+|..|+..|...|..++|..+.|...
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3468888999999999999999998754
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.75 E-value=1.8 Score=30.80 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHH
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFV 737 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~ 737 (1004)
.|..+...|...|+.++|+++|++.++. .| |...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHH
Confidence 5677788888888888888888888884 55 333443
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.67 E-value=2 Score=44.73 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH
Q 001852 804 WRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 804 ~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
|..-..+-...|+.++|.+-+|.+++|+|++.. |-..|+......|+.-
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKI 216 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhH
Confidence 333344445568899999999999999998533 4445554444444433
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=6.8 Score=40.96 Aligned_cols=149 Identities=13% Similarity=0.036 Sum_probs=96.6
Q ss_pred hcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHh---CCCCChhHHhHHHhhHHhcCChhh
Q 001852 610 LHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKL---GFDLDPFVTNAAMDMYGKCGEIGD 686 (1004)
Q Consensus 610 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~k~g~~~~ 686 (1004)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-+..++.++.. +++...++...+.-.+..||-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 357777777777777764 5556666666677788888877777777766543 333334444445555668899999
Q ss_pred HhhhcCCCCCCCh-hHH--HHHHHHHHhcCCHHHHHHHHHHHhhccC-CCH---hHHHHHHHHHhccCCHHHHHHHHHHh
Q 001852 687 VLRIAPQPVDRPR-LSW--NILISVFARHGYFQKAIETFDEMLKYVK-PDH---VTFVSLLSACNHGGLVDKGLQYYNTM 759 (1004)
Q Consensus 687 A~~~~~~~~~~~~-~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~-pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m 759 (1004)
|.+.-++..+-|. .+| .+....+-..|+.+++.+...+-...-+ .+. -.|-...--+...+.++.|+++|+.=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9998888776443 345 4566677788999999888776544311 110 11222333455668899999988854
No 277
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.40 E-value=0.19 Score=47.35 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=62.0
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHH
Q 001852 335 LLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDA 414 (1004)
Q Consensus 335 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 414 (1004)
++..+.+.+..+....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5566677778888888888888877677888999999999999888888888884433 3345566666777777777
Q ss_pred HHHHHHhh
Q 001852 415 LKIFSNML 422 (1004)
Q Consensus 415 ~~l~~~m~ 422 (1004)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77666653
No 278
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.04 E-value=12 Score=40.90 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 001852 817 VELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 817 ~e~a~~~~~~~~~l~p~~ 834 (1004)
.+.|...|++.++++|+-
T Consensus 242 ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHcCCccc
Confidence 789999999999999764
No 279
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.74 E-value=4.7 Score=46.47 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCh----------hhHHHHHHHHhhhhhHHHHHHHHHHHH-HhC-CCCC
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDR----------FSLSEGLAAAAKLAVLEEGHQLHGLAT-KLG-FDLD 667 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g-~~~~ 667 (1004)
+-..|+-.|....+++..+++.+.++.. ||. +-|.-.|+-=-+-|+-+.|....--+. +.| +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4455666777788888888888877652 332 223333333334566666666544333 333 223
Q ss_pred hhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCH---hHHHHHHHHHh
Q 001852 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDH---VTFVSLLSACN 744 (1004)
Q Consensus 668 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~---~t~~~ll~a~~ 744 (1004)
||||-||++=+ .|- +-+.|-..+..+.|.+.|++.-+ +.|+. +.+..|+.|-.
T Consensus 279 --------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe-veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 --------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE-VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred --------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc-cCchhhccccHHHHHHHhh
Confidence 56777777532 111 12334455667788899998888 57754 34444444322
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAA 824 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~ 824 (1004)
+ .++...++-. + | ..|-.+++|.|.++.-.+..+- ..++.+-...+|...|.+++
T Consensus 335 ~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHH
Confidence 2 1222222111 0 1 1245688999998876665431 34566777789999999999
Q ss_pred HHHHhcCCCC
Q 001852 825 EHLFELDPSD 834 (1004)
Q Consensus 825 ~~~~~l~p~~ 834 (1004)
++++++.|..
T Consensus 390 e~mfKLk~P~ 399 (1226)
T KOG4279|consen 390 EMMFKLKPPV 399 (1226)
T ss_pred HHHhccCCce
Confidence 9999998853
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.67 E-value=8.3 Score=36.29 Aligned_cols=89 Identities=15% Similarity=0.023 Sum_probs=49.6
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 001852 741 SACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKMP-VTPNDLVWRSLLASSKIHGNVE 818 (1004)
Q Consensus 741 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m~-~~p~~~~~~~ll~~~~~~g~~e 818 (1004)
+.-...++.+++..++..+. -+.|.. ++-.+-+.++.+.|++++|..+++++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33345556666666666664 344443 333344455666777777777777663 2344444566666666554444
Q ss_pred HHHHHHHHHHhcCC
Q 001852 819 LAKKAAEHLFELDP 832 (1004)
Q Consensus 819 ~a~~~~~~~~~l~p 832 (1004)
.=...++.+++.+|
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44555666666555
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.33 E-value=1.1 Score=30.30 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLK 727 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 727 (1004)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466677777777777777777777553
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.37 E-value=2.1 Score=41.18 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhC
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
.|..-..+..+.+..+.|+...-+++++.|....+...-+.+|....++++|.+=++++.+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 44455555666778888888888888888877777777778888888888888877776653
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.29 E-value=92 Score=37.33 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.1
Q ss_pred HHhcCChHHHHHHHHhCCCCCC
Q 001852 779 LGRSGRLAEAETFINKMPVTPN 800 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m~~~p~ 800 (1004)
+..+|++++|++.+++.++-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 4578999999999999988773
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.85 E-value=3.4 Score=42.98 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=58.7
Q ss_pred hHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhh-----cCCCCChhhHHH
Q 001852 568 YVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRH-----TGVYFDRFSLSE 638 (1004)
Q Consensus 568 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 638 (1004)
.+...++..+..+|+.+.+.+.+++.... |...|..||.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35577889999999999999999988654 778999999999999999999999999865 466666554433
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.44 E-value=84 Score=36.18 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=127.9
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHH
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPVDR---PRLSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSA 742 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a 742 (1004)
+..+|..-++.-.+.|+.+.+.-.|++...| =...|--.+.-.-..|+.+-|-.+.....+- .+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567778888888889999998888887654 2245655555555558888888777766655 34344554444556
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAE---TFINKM-PVTPNDLVWRSLLA-----SSK 812 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~---~~i~~m-~~~p~~~~~~~ll~-----~~~ 812 (1004)
+-+.|+.+.|..+++...+++ |+. +.-.--+....|.|.++.+. +++... +..-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 778899999999999999865 654 33333456778999999988 666554 33333322222211 134
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCC
Q 001852 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
+.++.+.|..++.++.+..|++-..|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999998777663
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.31 E-value=2.2 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPD 732 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd 732 (1004)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE-LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH-HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH-HCcC
Confidence 566677777777777777777777766 3553
No 287
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.16 E-value=5.3 Score=43.64 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=87.4
Q ss_pred hcCCHHHHHHH-HHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHH
Q 001852 711 RHGYFQKAIET-FDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 711 ~~g~~~~A~~l-~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 788 (1004)
..|+...|-+- |.-+... -.|+.+...+. ..++.|.++.+...+..... -+.....+..|+..-+...|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 34666666554 4444443 55666655444 47899999999999887764 3445567778899989999999999
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCCeehhh
Q 001852 789 ETFINKM---PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD-DSSYVLYS 842 (1004)
Q Consensus 789 ~~~i~~m---~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~-~~~~~~l~ 842 (1004)
+.+...| .++ ++.+...-..+-+..|-++++...+++++.+.|.. ++.-..|+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 9998887 232 33333333444566788999999999999998764 44433443
No 288
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=83.10 E-value=80 Score=34.88 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=56.8
Q ss_pred CCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCCh
Q 001852 260 HYTVPVANSLISMFGNFGSVKEARCIFDSMHVRD---TISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINS 329 (1004)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 329 (1004)
+.|...|-.||.-|...|..++.++++++|..|- ...|..-|++-....++.....+|.+-....+..|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL 111 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL 111 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH
Confidence 4567788899999999999999999999998773 346888888888888888888888888777655444
No 289
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.94 E-value=42 Score=37.35 Aligned_cols=207 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred hhHhhhcCCCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCC--------HhHHHHHHHHHh
Q 001852 685 GDVLRIAPQPVDRP----------RLSWNILISVFARHGYFQKAIETFDEMLKY--VKPD--------HVTFVSLLSACN 744 (1004)
Q Consensus 685 ~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd--------~~t~~~ll~a~~ 744 (1004)
|+|+...++.++.| ......++..-...|+..+|++-...|.+- -.|. ...-..+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCCHHHHHHHHHHhHhhc-CCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--------HHHHHHHHHHHHhc
Q 001852 745 HGGLVDKGLQYYNTMTTEF-GVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN--------DLVWRSLLASSKIH 814 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~-~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~--------~~~~~~ll~~~~~~ 814 (1004)
.-|.++.|...|....+.. .+......-..+.-.|-|.|+-++-.+.++.. |.... ..++...+--....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCeehhhhHhhhcCCchHHHH-HHHHHhhCCCccCCcccEEEeCCeEEEEecC
Q 001852 815 GNVELAKKAAEHLFE------LDPSDDSSYVLYSNVCAATGRWDDVEN-VRRQMGWNKIKKKPACSWVKSKDGVNSFGMG 887 (1004)
Q Consensus 815 g~~e~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~ 887 (1004)
|++.+|+....+.++ +.--.+-..++|+++....|+..++.+ ||-.|.- -+|.|.
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql--AkKi~D---------------- 520 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL--AKKIPD---------------- 520 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH--HhcCCC----------------
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcC
Q 001852 888 DHSHPDTEHIYAKLEELKKMIKEAG 912 (1004)
Q Consensus 888 d~~h~~~~~i~~~l~~l~~~~~~~g 912 (1004)
||.---..+.++.|.....+.|
T Consensus 521 ---i~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 521 ---IPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred ---chHHHHHHHHHHHHHHHhCcch
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.82 E-value=24 Score=33.75 Aligned_cols=134 Identities=7% Similarity=0.032 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHH-HHHHHHHhc-CChhhHHHHHhcCC
Q 001852 314 LKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCN-TLLAMYSEA-GRSEDAKFVFQEMS 391 (1004)
Q Consensus 314 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~y~~~-g~~~~A~~~f~~m~ 391 (1004)
++.++.+.+.+++|+...+..++..+.+.|.+..- .+++..++-+|..... .|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34555666677778877888888888777765433 3334445444443333 232221110 00223333343333
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 001852 392 ERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITM 459 (1004)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 459 (1004)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34666777888889999998888775321 2233345666666666665555555555443
No 291
>PRK09687 putative lyase; Provisional
Probab=82.70 E-value=70 Score=33.91 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=35.4
Q ss_pred chhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 001852 566 HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAA 643 (1004)
Q Consensus 566 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 643 (1004)
+..+...-+.+.++.|+....-.+.+.+...+ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 33444455555555555332222333333323 223455666666664 566666666653 34555444444444
No 292
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.35 E-value=2 Score=31.97 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
|.-++.+.|+++.|.+..+.+++++|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 455788999999999999999999998744
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.70 E-value=50 Score=31.60 Aligned_cols=134 Identities=10% Similarity=0.096 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCC
Q 001852 350 GIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVN 429 (1004)
Q Consensus 350 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 429 (1004)
+...-+.+.++.++..++..+++.+.+.|++..-..+++ .++-||
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----------------------------------~~Vi~D 59 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----------------------------------YHVIPD 59 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----------------------------------hcccCC
Confidence 334444556777777777777777777766555554443 334444
Q ss_pred HhhHHHHHHhhcCCCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhh
Q 001852 430 YVTFTSALAACSDPGFVVQGKIIHALVITM-GLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSE 508 (1004)
Q Consensus 430 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 508 (1004)
.......|-.... ....+.++=-.|.+. + ..+..++..+...|++-+|.++.+....-+......++.+-.+
T Consensus 60 Sk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 60 SKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred cHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 4433333322221 111222221111111 1 1245567778888999999999888765566666677777777
Q ss_pred CCChhHHHHHHHHHHhc
Q 001852 509 KEEPDKALKAYKRMREE 525 (1004)
Q Consensus 509 ~g~~~~A~~l~~~m~~~ 525 (1004)
.++...-..+|+-..+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77766655555555543
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.27 E-value=71 Score=34.10 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhhhcCCCCChhhHHHHHHHHhh------hhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhH
Q 001852 614 GEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAK------LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDV 687 (1004)
Q Consensus 614 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 687 (1004)
+++.+.+++.|.+.|++-+..++.+....... ......++.++..|.+...-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34566778888888888888777664443322 1335566677777766543211
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHhcCC----HHHHHHHHHHHhhc-cC-CCHhHHHHHHHHHhccCC---HHHHHHHHHH
Q 001852 688 LRIAPQPVDRPRLSWNILISVFARHGY----FQKAIETFDEMLKY-VK-PDHVTFVSLLSACNHGGL---VDKGLQYYNT 758 (1004)
Q Consensus 688 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~-~~-pd~~t~~~ll~a~~~~g~---~~~a~~~~~~ 758 (1004)
.++...+.+|+.. ..++ .++++..|+.+.+. +. -|..-+.+-+-+++..-. +.+..++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1233334444333 1122 35677788888885 44 466555555555543222 4578888988
Q ss_pred hHhhcCCCCCCchHHHHHH
Q 001852 759 MTTEFGVPAGIEHCVCIID 777 (1004)
Q Consensus 759 m~~~~~~~p~~~~y~~lv~ 777 (1004)
+.+. ++++...||..++-
T Consensus 208 l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 208 LKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHc-CCccccccccHHHH
Confidence 8875 99999999986653
No 295
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=80.17 E-value=1e+02 Score=34.07 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCCC---CcchHHHHHHHHHcCCCHHHHHHHHHHhhhcC
Q 001852 368 NTLLAMYSEAGRSEDAKFVFQEMSER---DSVSWNSLVASHVQDEKYIDALKIFSNMLQKQ 425 (1004)
Q Consensus 368 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (1004)
..|+.-|.-.|++.+|.+...++.-| ..+.+-+++.+.-+.|+....+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45777888889999999999887765 56778888888888888777777777766554
No 296
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.71 E-value=3.1 Score=26.14 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4666777777788889999888888888775
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.68 E-value=58 Score=31.06 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=83.3
Q ss_pred HHhcCCHHHHHHHHHHHhhc-cCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCc-hHHH--HHHHHHhcC
Q 001852 709 FARHGYFQKAIETFDEMLKY-VKPDH-VTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIE-HCVC--IIDLLGRSG 783 (1004)
Q Consensus 709 ~~~~g~~~~A~~l~~~m~~~-~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~--lv~~l~r~g 783 (1004)
+++.|..++|+.-|.++.+. ...-. ..-.-........|+..+|...|+.+-.+..+ |.+. ...- -..+|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 36778888999999888776 33221 22333445667889999999999998765333 3321 2222 234567889
Q ss_pred ChHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 784 RLAEAETFINKMPVTPN---DLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 784 ~~~eA~~~i~~m~~~p~---~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
-+++....++.+..+.+ ...-.+|.-+-.+.|++..|...++++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99998888887743333 34567787788899999999999999877
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.04 E-value=6.6 Score=36.93 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=28.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 813 IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.+++.+.++.++.-+--+.|+.+..-..-++++...|+|.+|.++.+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555554443
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.92 E-value=8.8 Score=35.47 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCC
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNK 865 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 865 (1004)
+++.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++.+...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6888888888888888899999988888999999999999988877665543
No 300
>PRK10941 hypothetical protein; Provisional
Probab=78.74 E-value=4.3 Score=42.38 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEE
Q 001852 803 VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVN 882 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~ 882 (1004)
..++|-.++...++++.|.++.+.++.+.|+++.-+---+-+|++.|.|..|..=.+--.++ .|
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~----~P------------ 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ----CP------------ 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh----CC------------
Confidence 45677778889999999999999999999999988888999999999999998744433221 12
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHH
Q 001852 883 SFGMGDHSHPDTEHIYAKLEELKKM 907 (1004)
Q Consensus 883 ~f~~~d~~h~~~~~i~~~l~~l~~~ 907 (1004)
.-|.++.|...++.|..+
T Consensus 247 -------~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 -------EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred -------CchhHHHHHHHHHHHhhc
Confidence 246677777777766543
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.55 E-value=63 Score=31.60 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=62.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHH-----HHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVC-----IIDLLGRSGRLAEAETFINKMPVTP-NDLVWRSLLASSK 812 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-----lv~~l~r~g~~~eA~~~i~~m~~~p-~~~~~~~ll~~~~ 812 (1004)
+..++...|++++|...++.... .|.-+.+.. +..++...|++|+|++.++...-+. .+..-..-+..+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHH
Confidence 34567788888888888876643 233333333 4556778899999999998763211 1112233355677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 001852 813 IHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 813 ~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
..||.+.|+..++++++.++++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 8899999999999999987654
No 302
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.39 E-value=1.6e+02 Score=35.43 Aligned_cols=56 Identities=9% Similarity=-0.033 Sum_probs=32.1
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcC
Q 001852 470 ALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEG 526 (1004)
Q Consensus 470 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 526 (1004)
.-+..+.+.+++.....++..- ..+...--....+....|+.++|....+.+-..|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 3344455666777666633222 2233334445566677777777777777776655
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.36 E-value=4.7 Score=26.32 Aligned_cols=31 Identities=29% Similarity=0.692 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLKYVKPD 732 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd 732 (1004)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~-l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE-LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH-HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH-HCcC
Confidence 456666677777777777777777766 3443
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.13 E-value=36 Score=34.31 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhH
Q 001852 599 VTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMY 678 (1004)
Q Consensus 599 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 678 (1004)
..|.--..+|...+++++|..-+.+..+. ..-+..-| ... ...+.+--+...+.+. .--+..++--..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555666777778888887766665421 11111111 111 1222222222222221 11123345556677
Q ss_pred HhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---CHhH---HHHHHHHHhccCCHHHH
Q 001852 679 GKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKP---DHVT---FVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 679 ~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~p---d~~t---~~~ll~a~~~~g~~~~a 752 (1004)
..+|..+.|--.+++.- -...+-++++|+++|.+....+.. +... +..+...+.+..+++||
T Consensus 102 ~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 77777776654444321 112334566666666666554111 1111 22223334445555555
Q ss_pred HHHHHHhHhh---cCCCCCC-chHHHHHHHHHhcCChHHHHHHHHh---CC--CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 001852 753 LQYYNTMTTE---FGVPAGI-EHCVCIIDLLGRSGRLAEAETFINK---MP--VTP-NDLVWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 753 ~~~~~~m~~~---~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~---m~--~~p-~~~~~~~ll~~~~~~g~~e~a~~ 822 (1004)
-..|.+-..- ..--|+. ..|...|-++.-..++..|+..++. .| ..| +..+...||.+| ..||.|....
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 5444332110 0111111 1233333333445566666666665 23 122 233556666554 4566666555
Q ss_pred HH
Q 001852 823 AA 824 (1004)
Q Consensus 823 ~~ 824 (1004)
++
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.82 E-value=4.9 Score=27.74 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
.+++.|...+...|++++|+..++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666667777777777777777666
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=77.75 E-value=40 Score=35.99 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhcCCcCCH--hhHHHHHHhhcCCCC--hHHHHHHHHHHHHhCCCCchHHHHHH
Q 001852 412 IDALKIFSNMLQKQRLVNY--VTFTSALAACSDPGF--VVQGKIIHALVITMGLHDNLIVGNAL 471 (1004)
Q Consensus 412 ~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~L 471 (1004)
+.+...|+.+...|...+. .+.+.+|..+..... +..+..++..+.+.|+++....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4556677777776765533 233444444333322 33566666777777777665555543
No 307
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.00 E-value=5.7 Score=38.88 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 001852 746 GGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 746 ~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~ 822 (1004)
.|.+.-|+--|.+.. .+.|+. +.|+-+.-.|-.+|+++-|.+.++.. .+.|... +...-.-+..--|+.++|.+
T Consensus 78 lGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 344455554444443 344443 45555555555566666666655554 3444321 22111112333456666666
Q ss_pred HHHHHHhcCCCCC
Q 001852 823 AAEHLFELDPSDD 835 (1004)
Q Consensus 823 ~~~~~~~l~p~~~ 835 (1004)
-+-+..+-||+||
T Consensus 155 d~~~fYQ~D~~DP 167 (297)
T COG4785 155 DLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHhcCCCCh
Confidence 6666666666554
No 308
>PRK09687 putative lyase; Provisional
Probab=75.54 E-value=1.1e+02 Score=32.28 Aligned_cols=75 Identities=8% Similarity=-0.024 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChhhHHHHHHhh
Q 001852 462 HDNLIVGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGAC 541 (1004)
Q Consensus 462 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 541 (1004)
.++..+-...+.++.+.|+..-.-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3466666667777777777544444444444444 234566777777775 688888887763 23554444444443
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.40 E-value=5 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 805 RSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 805 ~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
-.+..++...|+.+.|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345566777788888888888888888863
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.06 E-value=1e+02 Score=31.05 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHhHhhcCCCC-CCchHHHH---HHHHHhcCChHHHHHHHHhC---CCCCCHHHH---HHHHH--HHHhc
Q 001852 747 GLVDKGLQYYNTMTTEFGVPA-GIEHCVCI---IDLLGRSGRLAEAETFINKM---PVTPNDLVW---RSLLA--SSKIH 814 (1004)
Q Consensus 747 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l---v~~l~r~g~~~eA~~~i~~m---~~~p~~~~~---~~ll~--~~~~~ 814 (1004)
.+.++|+.+|+..-+-|..+. +...-.|+ .+.-+..|++.+|.+.+++. .+..+..-| ..++. .|..-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455666666666655443322 22222343 44556778899999998776 233333333 22333 36665
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCCC
Q 001852 815 -GNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 815 -g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
.|.=.+..++++-.+++|.-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 78889999999999999986554
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.00 E-value=5.6 Score=27.46 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 001852 700 LSWNILISVFARHGYFQKAIETFDEMLK 727 (1004)
Q Consensus 700 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 727 (1004)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777777664
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.77 E-value=15 Score=35.84 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=37.5
Q ss_pred HHhHHHhhHHhcCChhhHhhhcCCCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 001852 670 VTNAAMDMYGKCGEIGDVLRIAPQPVDRP------RLSWNILISVFARHGYFQKAIETFDEMLKY 728 (1004)
Q Consensus 670 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 728 (1004)
.+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566777777777777777777765432 124555666666667777666666666554
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.59 E-value=94 Score=32.37 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=48.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 808 LASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 808 l~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
...|...|++..|.++.++++.++|-+...+-.|-++|+..|+--.|.+-++.|.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3457888999999999999999999999999999999999999777777666554
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.27 E-value=1.3e+02 Score=31.85 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=10.6
Q ss_pred hhhCCChhHHHHHHHH
Q 001852 506 HSEKEEPDKALKAYKR 521 (1004)
Q Consensus 506 ~~~~g~~~~A~~l~~~ 521 (1004)
+.+.+++++|.+.|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4456777777777763
No 315
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.78 E-value=3.8 Score=27.19 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=10.4
Q ss_pred CHhHHHHHHHHHhccCCHHHH
Q 001852 732 DHVTFVSLLSACNHGGLVDKG 752 (1004)
Q Consensus 732 d~~t~~~ll~a~~~~g~~~~a 752 (1004)
|...|..+...+...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444455555555555555444
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.37 E-value=23 Score=37.01 Aligned_cols=69 Identities=19% Similarity=0.373 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCCch
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTT----EFGVPAGIEH 771 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 771 (1004)
+..++..+...|+.+.+.+.+++.... .| |...|..++.+|...|....|+..|+++.+ +.|+.|..+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 344555555555555555555555553 33 555555555555555655555555555543 3455555443
No 317
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.35 E-value=2.3e+02 Score=34.22 Aligned_cols=258 Identities=12% Similarity=0.052 Sum_probs=130.3
Q ss_pred HHhhHHHHcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHH
Q 001852 572 SLITMYAKCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEE 651 (1004)
Q Consensus 572 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 651 (1004)
.-+..+.+.+++..... |..-+..+...-.....+....|+.++|....+.+-..|.. .......++..+.+.|.+..
T Consensus 104 ~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 104 RFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCH
Confidence 33444556777777776 33222335555556667777788887787777777655532 23345555665554443322
Q ss_pred HHH--HHHHHHHhC-----------CCCC-hhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHH--hcCCH
Q 001852 652 GHQ--LHGLATKLG-----------FDLD-PFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFA--RHGYF 715 (1004)
Q Consensus 652 a~~--~~~~~~~~g-----------~~~~-~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~ 715 (1004)
... =+..+...| +.++ ......++..+.+-.+++.. +.... ++...-...+.++. ...+.
T Consensus 182 ~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~---~~~~~-~~~~~~~~~~~~l~Rlar~d~ 257 (644)
T PRK11619 182 LAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETF---ARTTG-PTDFTRQMAAVAFASVARQDA 257 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHH---hhccC-CChhhHHHHHHHHHHHHHhCH
Confidence 110 011111111 1111 12233444444333333322 22211 11111111222222 23466
Q ss_pred HHHHHHHHHHhhc--cCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHH
Q 001852 716 QKAIETFDEMLKY--VKPDHV--TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 716 ~~A~~l~~~m~~~--~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 791 (1004)
+.|..++.+.... +.+... .+..+.......+..+++..+++..... ..+.+...--+..-.+.++++.+...
T Consensus 258 ~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 258 ENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 8899999887554 333322 2333333333333367777777765322 12333333334444489999999999
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhh
Q 001852 792 INKMPV--TPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYS 842 (1004)
Q Consensus 792 i~~m~~--~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~ 842 (1004)
|..||- .-...-.--+..+....|+.+.|...++++.. + ...|-.|+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 999952 11122222345555668999999999999844 2 24555554
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.28 E-value=56 Score=35.94 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 800 NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS----DDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 800 ~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
...+|..+...|+++|+++.|..++.++.+.++. .+...+.-+.+..+.|+..+|...-+...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3458999999999999999999999999997643 345566668999999999999885444443
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.17 E-value=24 Score=34.36 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=19.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 810 SSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 810 ~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
+|-+.-.++.|..-++++++++|....
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 455556788888888888888887543
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.02 E-value=46 Score=38.10 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=62.2
Q ss_pred hhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHH
Q 001852 273 FGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIH 352 (1004)
Q Consensus 273 ~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 352 (1004)
..+.|+++.|.++..+. .+..-|..|-.+....|++..|.+.|.+... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34557777777765543 3556788888888888888888888877554 345555555666655544444
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcC
Q 001852 353 GLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEM 390 (1004)
Q Consensus 353 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 390 (1004)
....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 444555532 22223445567777766666543
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.89 E-value=1e+02 Score=30.64 Aligned_cols=124 Identities=21% Similarity=0.159 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----CchHHHHH
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG----IEHCVCII 776 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv 776 (1004)
.+.-++.+.+.+...+|+.+.++-.+. +| |.-+--.+...++-.|+|++|..-++-.-+ +.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 445567788889999999999887775 66 777777888999999999999988776643 3333 34555555
Q ss_pred HHHHhcCChHHHHH-HHHh--CCCCC--CHHHH-HHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 777 DLLGRSGRLAEAET-FINK--MPVTP--NDLVW-RSLLASSK--IHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~-~i~~--m~~~p--~~~~~-~~ll~~~~--~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
++ +.+.. ++.. .|.-+ +...| .+|+.+.. ..|.-+......|++++-.|..++
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 43 22222 2221 13222 13355 44555544 345677788888999998887655
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.62 E-value=30 Score=29.52 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=46.8
Q ss_pred HHHhhcCCChhhHHHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHH
Q 001852 169 LHFYGTYGHINKARRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAA 233 (1004)
Q Consensus 169 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ 233 (1004)
+..+...|++++|.++.+.++.||...|-++-.. +.|..+.+..-+.+|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 4567789999999999999999999999887654 5666666666777777766 344444443
No 323
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.61 E-value=1.8e+02 Score=32.84 Aligned_cols=236 Identities=13% Similarity=0.128 Sum_probs=133.6
Q ss_pred HHHhcCCCC--CHhHHHHHHHHHHhcC------ChHHHHHHHHHhhh-cCCCCChhhHHHHHHHHhhhhhHHHHHHHHHH
Q 001852 588 YIFEGLAEK--NSVTWNAMIAANALHG------QGEEVLKLLVKMRH-TGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGL 658 (1004)
Q Consensus 588 ~~f~~~~~~--~~~~~~~li~~~~~~g------~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 658 (1004)
.+|++..+. ....|+..|..|...- ....-..+|+.... .+..|+...-.+.+..| .....++...-..
T Consensus 303 ~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~--~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLC--LNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH--HhccchHhHHHHH
Confidence 555554433 4556766666654432 23333444444332 23344333221111111 1122333333344
Q ss_pred HHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCC--------CCCCChhHHHHHHHHHHhcCC-HH-HHHHHHHHHhhc
Q 001852 659 ATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQ--------PVDRPRLSWNILISVFARHGY-FQ-KAIETFDEMLKY 728 (1004)
Q Consensus 659 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~-~~-~A~~l~~~m~~~ 728 (1004)
+...++..+...|-.-+....+... ++.-+|.. +..+-..+|++-. .|+ .. .-+.++-.....
T Consensus 381 l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 381 LTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred hhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 4445556666666554444432211 33333332 2223445666655 222 22 222233333333
Q ss_pred -cCCCHhHHH-HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHH---hcCChHHHHHHHHhC--CCCCCH
Q 001852 729 -VKPDHVTFV-SLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLG---RSGRLAEAETFINKM--PVTPND 801 (1004)
Q Consensus 729 -~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~---r~g~~~eA~~~i~~m--~~~p~~ 801 (1004)
..|+.+|+. .++.-+-..|-+.+|...+.+... -.+|+...|.-||..=. ..| +.-+.+.++.| .+-.|+
T Consensus 454 ~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 454 VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADS 530 (568)
T ss_pred hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCCh
Confidence 678888776 466777788999999999999875 44557778888876543 233 77888888887 456888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCC
Q 001852 802 LVWRSLLASSKIHGNVELAKKAAEHLFE-LDPSDD 835 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~~~~~~~-l~p~~~ 835 (1004)
..|...+.--..+|..+.+-.++.++++ ++|+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHHhhChhhh
Confidence 9999999888899999988888888877 566543
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.52 E-value=57 Score=30.38 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 001852 746 GGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKMPVTP-NDLVWRSLLASSK 812 (1004)
Q Consensus 746 ~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p-~~~~~~~ll~~~~ 812 (1004)
.++.+++..+++.|. -+.|+. +.-.+-+.++.+.|+++||..++++..-.+ ....-.+|+..|.
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 455555555555553 233332 222233444555666666666666653322 2233344444443
No 325
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=71.52 E-value=55 Score=31.86 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChh--hHHHHHHHHhhhhhHHHHHHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRF--SLSEGLAAAAKLAVLEEGHQL 655 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~~ 655 (1004)
.|..+..-|.+.|+.++|++.|.++......|... .+..++..+...+++......
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445555555555555555555555443333221 223333444444444444443
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.48 E-value=6.7 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 001852 701 SWNILISVFARHGYFQKAIETFDEMLK 727 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 727 (1004)
+|..+...|.+.|+.++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777766
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.44 E-value=2.3e+02 Score=34.00 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CC-Ce-----ehhhhHhhhcCCchHHHHHHHHHh
Q 001852 805 RSLLASSKIHGNVELAKKAAEHLFELDPSD---DS-SY-----VLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 805 ~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~---~~-~~-----~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
.++++.-.-.|++++......+++.+-+.. .. .+ -.+.+.|...|+.++|..++.+..
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 344444333566665555555555543322 11 22 133445667788888777776543
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.99 E-value=1.7e+02 Score=33.11 Aligned_cols=189 Identities=12% Similarity=0.026 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHh
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMD 676 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 676 (1004)
|-...-+++..+.++-...-...+..+|.. +.-+...+..++..+... .-+.-..+++.+.+..+. |+.....|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Q ss_pred hHHhcCChhhHhhhcCCCCCCChh---------HHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhHHHHHHHHHhc
Q 001852 677 MYGKCGEIGDVLRIAPQPVDRPRL---------SWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVTFVSLLSACNH 745 (1004)
Q Consensus 677 ~y~k~g~~~~A~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t~~~ll~a~~~ 745 (1004)
.|.+ ++.+.+...|.++..+=+. .|.-++.. .-.+.+..+.+..+.... ..--.+.+--+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHh--------------------cCChHHHHHHHHh
Q 001852 746 GGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGR--------------------SGRLAEAETFINK 794 (1004)
Q Consensus 746 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r--------------------~g~~~eA~~~i~~ 794 (1004)
..++++|++++..+.+ ..+.+...-..++.-+.. ..++-+|..=++.
T Consensus 218 ~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek 284 (711)
T COG1747 218 NENWTEAIRILKHILE--HDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEK 284 (711)
T ss_pred ccCHHHHHHHHHHHhh--hcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHH
No 329
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.69 E-value=1.4e+02 Score=33.79 Aligned_cols=148 Identities=9% Similarity=-0.005 Sum_probs=62.9
Q ss_pred HHHHhhcCCChhhHHHhhccCCCC----chhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh--HHHHHHHhccc
Q 001852 168 LLHFYGTYGHINKARRVFEEMPVR----NVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENT--FAAVITSCGLT 241 (1004)
Q Consensus 168 Li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~ 241 (1004)
.+...++.|+.+.+..+++.-... +...++. +...+..|+. ++++.+.+.|..|+... -.+.+..++..
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~ 145 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMM 145 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence 344455666766666666543311 1111222 2223344443 34444555565554321 11223333344
Q ss_pred CChhhhHHHHHHHHHhcCCCChh--hhhHHHHHhhCCCCHHHHHHHHhhCCCCCcch---HHHHHHHHHhCCCchhHHHH
Q 001852 242 ENDLLGYLFLGHVIKFGFHYTVP--VANSLISMFGNFGSVKEARCIFDSMHVRDTIS---WNSMISVYSHSGLCDQSLKC 316 (1004)
Q Consensus 242 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~---~~~li~~~~~~g~~~~A~~l 316 (1004)
|+.+. ...+++.|..++.. ...+.+...+..|..+-+.-+++.-..++... ..+.+...+..|+. ++
T Consensus 146 ~~~~~----v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~i 217 (413)
T PHA02875 146 GDIKG----IELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DI 217 (413)
T ss_pred CCHHH----HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HH
Confidence 54433 33334455433321 12223333445566666666555544332221 12333333344443 34
Q ss_pred HHHHHHcCCCCC
Q 001852 317 FHWMRHVGQEIN 328 (1004)
Q Consensus 317 ~~~m~~~g~~p~ 328 (1004)
.+.+.+.|..|+
T Consensus 218 v~~Ll~~gad~n 229 (413)
T PHA02875 218 VRLFIKRGADCN 229 (413)
T ss_pred HHHHHHCCcCcc
Confidence 444455565554
No 330
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.50 E-value=1.3e+02 Score=30.62 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=105.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCC--hhHHHHHHHHHHhcCCHH
Q 001852 639 GLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRP--RLSWNILISVFARHGYFQ 716 (1004)
Q Consensus 639 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 716 (1004)
.-.++....+++.++.-+....+. .+.+...+.+ ....+.|.-+.+++.+-+ +..++--...|..+|..+
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 344566677778877755554431 1222222111 122344444444444322 234556678899999988
Q ss_pred HHHHHHHHHhhc---cCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHH
Q 001852 717 KAIETFDEMLKY---VKPDHV--TFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 717 ~A~~l~~~m~~~---~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 791 (1004)
-|-..+++.-+. ++||.. .|.--+......++...|. +.|.-...+|.|..+++||-..
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~----------------el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF----------------ELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH----------------HHHHHhhhHhhhhHHhhHHHHH
Confidence 887777765543 666542 2222222222222322332 4455566788899999998877
Q ss_pred HHhCC-----C--CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 792 INKMP-----V--TPNDL-VWRSLLASSKIHGNVELAKKAAEHLFEL----DPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 792 i~~m~-----~--~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l----~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
+.+-. + -|+.. .+-+++-.+.-..|+..|++.++.--+. .|++......|-..| ..|+.+++.+|-+
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 76541 2 23321 2223222344446888899888886663 455555444444444 4577777666543
No 331
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.27 E-value=11 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCCC
Q 001852 803 VWRSLLASSKIHGNVELAKKA--AEHLFELDPSD 834 (1004)
Q Consensus 803 ~~~~ll~~~~~~g~~e~a~~~--~~~~~~l~p~~ 834 (1004)
-|-++...+...|+.+.|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 467788889999999999999 55888888865
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.74 E-value=41 Score=32.00 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=27.8
Q ss_pred hcCChhhHHHHHhcCCCCCcchHHHHH-----HHHHcCCCHHHHHHHHHHhhhcCCcC
Q 001852 376 EAGRSEDAKFVFQEMSERDSVSWNSLV-----ASHVQDEKYIDALKIFSNMLQKQRLV 428 (1004)
Q Consensus 376 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p 428 (1004)
..+..++|..-|..+.+.+--.|-.|. ....+.|+...|...|++.-.....|
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 345555555555555554444443332 23445666666666666665543333
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.46 E-value=8.3 Score=40.38 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 777 DLLGRSGRLAEAETFINK-MPVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 777 ~~l~r~g~~~eA~~~i~~-m~~~p-~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
+-|.+.|+++||.+.+.+ |...| +++.+..-..+|.+.+.+..|+.-.+.++.|+-.-..+|..-+..-.+.|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456677888888887765 45666 6666666666888888888888888888888766555555555555555666665
Q ss_pred HHH
Q 001852 855 ENV 857 (1004)
Q Consensus 855 ~~~ 857 (1004)
.+=
T Consensus 185 KkD 187 (536)
T KOG4648|consen 185 KKD 187 (536)
T ss_pred HHh
Confidence 543
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.70 E-value=12 Score=36.62 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCCCeehhhhHhhhcCCchHH
Q 001852 786 AEAETFINKMPVTP--NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPS----DDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 786 ~eA~~~i~~m~~~p--~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a 854 (1004)
++|.+-|-.+.-.| +....-.-|+.++...|.+.++..+-+++++.+. |+..+..|+.+|...|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555444442221 2233344456677788888888888888887443 466777888888888888776
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.18 E-value=1.6e+02 Score=35.88 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHhhccC-----CCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 001852 712 HGYFQKAIETFDEMLKYVK-----PDHVTFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 712 ~g~~~~A~~l~~~m~~~~~-----pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
.|+.++|+++.+.....++ +..+.+..+..+..-.|++++|+.+..+..
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 3555555555555554422 222333344444445555555555544443
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.02 E-value=66 Score=35.61 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=98.7
Q ss_pred cCCHHHHHH-HHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001852 746 GGLVDKGLQ-YYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMP--VTPNDLVWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 746 ~g~~~~a~~-~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~--~~p~~~~~~~ll~~~~~~g~~e~a~~ 822 (1004)
.|+.-.|-+ +|..+ +.+.- ++.|......++...|.++.|+..+.... +.....+...++......|+.+.|..
T Consensus 302 ~gd~~aas~~~~~~l-r~~~~--~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAAL-RNQQQ--DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHH-HhCCC--CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 455555444 44444 33333 34454555567788999999999998772 45556678888888888899999999
Q ss_pred HHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCC
Q 001852 823 AAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGD 888 (1004)
Q Consensus 823 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 888 (1004)
.++.++.-+-+++.....-+-.-.+.|-.+++..-||...... .+...-|+..-.....|--|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCcc
Confidence 9999999998888877766666667788999999999876543 334445776666666666554
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.20 E-value=19 Score=30.87 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 788 AETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 788 A~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
+++-+-.+-+.|++.+..+-|.||+..+|+..|.+++|-+-..-.+.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~ 78 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK 78 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence 33334445688999999999999999999999999999887654443
No 338
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.13 E-value=4.4 Score=42.62 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=48.6
Q ss_pred cCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 782 SGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 782 ~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
.|.+++|.+.+... ++.|+.. ++..-.+++.+.++...|++-+..+++++|+.+..|-.-+......|+|++|.+...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555544443 3444432 333334445555666666666667777777777777777767777777777766555
Q ss_pred HHhhCCC
Q 001852 860 QMGWNKI 866 (1004)
Q Consensus 860 ~m~~~~~ 866 (1004)
..-+.+.
T Consensus 207 ~a~kld~ 213 (377)
T KOG1308|consen 207 LACKLDY 213 (377)
T ss_pred HHHhccc
Confidence 4444443
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.12 E-value=19 Score=30.50 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=35.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 788 AETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 788 A~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+++-+-.+-+.|++.+..+-|.||+.-+|+..|.+.+|-+-..-
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 33444445688999999999999999999999999999776443
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.92 E-value=1.7e+02 Score=29.99 Aligned_cols=245 Identities=13% Similarity=0.144 Sum_probs=143.8
Q ss_pred HcCChhhHHHHHhcCCCC-------CHhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CC--CCChhhHHHHHHHHhhh
Q 001852 579 KCGDLNSSNYIFEGLAEK-------NSVTWNAMIAANALHGQGEEVLKLLVKMRHT---GV--YFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 579 k~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~pd~~t~~~ll~a~~~~ 646 (1004)
+..++++|..-|+++.+- .--+...||..+.+.|++++.++.|++|..- .+ .-+.-+.++++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345788888888876432 3345667899999999999999999998642 11 23455677888777666
Q ss_pred hhHHHHHHHHHHHHHh-----CCCCChhHHhHHHhhHHhcCChhhHhhhcCCCCC------------CC---hhHHHHHH
Q 001852 647 AVLEEGHQLHGLATKL-----GFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD------------RP---RLSWNILI 706 (1004)
Q Consensus 647 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~------------~~---~~~~~~li 706 (1004)
.+.+.-.++++.-.+. +-..=-.+.+-|...|...|.+..-.+++.++.. +. ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666655555433221 1011112234556666666666666666554321 11 13566667
Q ss_pred HHHHhcCCHHHHHHHHHHHhhc--cCCCHhHHHHHHHHHh-----ccCCHHHHHHHHHHhHhhcCCCCCC-----chHHH
Q 001852 707 SVFARHGYFQKAIETFDEMLKY--VKPDHVTFVSLLSACN-----HGGLVDKGLQYYNTMTTEFGVPAGI-----EHCVC 774 (1004)
Q Consensus 707 ~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~ 774 (1004)
..|-...+-++-..++++.+.- --|.+. ..+++.-|. +.|.+++|-.-|-..-+.|.-.-++ --|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 7887888888888889987754 344443 345777664 5788888876555555545333222 23555
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 775 IIDLLGRSGRLAEAETFINKMPVTPN--DLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m~~~p~--~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+++++.+.|--.=--+ +.-|.+.| ......|+.+|.. +++. .+|++++-.
T Consensus 278 LANMLmkS~iNPFDsQ--EAKPyKNdPEIlAMTnlv~aYQ~-NdI~----eFE~Il~~~ 329 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQ--EAKPYKNDPEILAMTNLVAAYQN-NDII----EFERILKSN 329 (440)
T ss_pred HHHHHHHcCCCCCccc--ccCCCCCCHHHHHHHHHHHHHhc-ccHH----HHHHHHHhh
Confidence 6677766663210000 01144444 4466778887754 3433 455555543
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.87 E-value=54 Score=37.52 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=25.1
Q ss_pred HcCChhhHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 001852 579 KCGDLNSSNYIFEGLAEKNSVTWNAMIAANALHGQGEEVLKL 620 (1004)
Q Consensus 579 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 620 (1004)
-.|+++.|..++..+++. .-+.++.-+.+.|..++|+++
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc
Confidence 357777787777777632 234455666677777777763
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.51 E-value=1e+02 Score=36.48 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=82.8
Q ss_pred HHhcCCHHHHHHHHHHHhh----c-cCCCHhHHHHHHHHHhccC-----CHHHHHHHHHHhHhhcCCCCCCchHHHHHHH
Q 001852 709 FARHGYFQKAIETFDEMLK----Y-VKPDHVTFVSLLSACNHGG-----LVDKGLQYYNTMTTEFGVPAGIEHCVCIIDL 778 (1004)
Q Consensus 709 ~~~~g~~~~A~~l~~~m~~----~-~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 778 (1004)
+....+.+.|+..|+.+.+ . ..-+......+..+|.+.. +.+.|+.++...... | .|+...+......
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHH
Confidence 3344556666666666544 1 1123334445556665543 344566666665441 2 2222222111111
Q ss_pred HHh-cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhc-CCch
Q 001852 779 LGR-SGRLAEAETFINKMP--VTPNDLVWRSLLASSK--IHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAAT-GRWD 852 (1004)
Q Consensus 779 l~r-~g~~~eA~~~i~~m~--~~p~~~~~~~ll~~~~--~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~ 852 (1004)
.+. -.+...|.+++.... -.+++..|.++...+- ...+.+.|...++++-+.+ ++.+...++.+|.-. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccccc
Confidence 122 123556777776653 2333333332222211 2248888888999988887 455556666655533 8888
Q ss_pred HHHHHHHHHhhCCCccC
Q 001852 853 DVENVRRQMGWNKIKKK 869 (1004)
Q Consensus 853 ~a~~~~~~m~~~~~~k~ 869 (1004)
.+.-.+..+++.|.+-.
T Consensus 415 ~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 415 TALALYLYLAELGYEVA 431 (552)
T ss_pred HHHHHHHHHHHhhhhHH
Confidence 88887777777666443
No 343
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.34 E-value=94 Score=28.29 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Q 001852 297 WNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLAL 360 (1004)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 360 (1004)
.+.-++.+..+|.-++--+++.++.. .-.|++.....+-.||.+.|+..++.+++..+-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 45556677777777777777777654 3356777777777788888888888887777777764
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.33 E-value=36 Score=35.58 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=63.2
Q ss_pred cCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCC---------CcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCC
Q 001852 258 GFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVR---------DTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEIN 328 (1004)
Q Consensus 258 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 328 (1004)
|.+....+...++..-....+++++...+-.+... ...+|--+ +-.-++++++.++..=...|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 44455555566666666667777777776665421 22222222 223356677777777777788888
Q ss_pred hhhHHHHHHhhcCCCChhhHHHHHHHHHHhc
Q 001852 329 STTFSTLLSACGSVDNLKWGRGIHGLAVKLA 359 (1004)
Q Consensus 329 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 359 (1004)
.+|++.+|..+.+.++...|.++.-.|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888777777776666543
No 345
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=63.43 E-value=4e+02 Score=33.78 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=7.3
Q ss_pred CchHHHHHHHHHhcCCh
Q 001852 769 IEHCVCIIDLLGRSGRL 785 (1004)
Q Consensus 769 ~~~y~~lv~~l~r~g~~ 785 (1004)
...-...+..|++.|.-
T Consensus 789 ~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 789 PLVRAAALAALAELGCP 805 (897)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 33333444444444443
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.16 E-value=93 Score=31.34 Aligned_cols=94 Identities=9% Similarity=0.064 Sum_probs=46.1
Q ss_pred HhccCCHHHHHHHHHHhHhhcC----CCCCCchHHHHHHHHHhc-CChHHHHHHHHhCC-----CCCCHHHHHHHHHH--
Q 001852 743 CNHGGLVDKGLQYYNTMTTEFG----VPAGIEHCVCIIDLLGRS-GRLAEAETFINKMP-----VTPNDLVWRSLLAS-- 810 (1004)
Q Consensus 743 ~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lv~~l~r~-g~~~eA~~~i~~m~-----~~p~~~~~~~ll~~-- 810 (1004)
|.+.++.++|...++..++.|. +.--..|+..+.++|... .+++.|..-++... -+.+...-..+|.+
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 3334455555555554433221 111123344455555433 55555555555541 12222233333332
Q ss_pred H-HhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 811 S-KIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 811 ~-~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
| ...+++..|+.++|++....-+|+-
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 1 2347788899998888876665543
No 347
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.92 E-value=18 Score=40.20 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=64.1
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH
Q 001852 779 LGRSGRLAEAETFINKM-PVTPNDLVWRSL-LASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m-~~~p~~~~~~~l-l~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
+...+.++.|..++.+. .++|+..++.+. ..+..+.+++..|..=+.+++|++|.....|+.-+..+.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34556677777777665 677876654333 3566777899999999999999999999999999999999999999887
Q ss_pred HHHHH
Q 001852 857 VRRQM 861 (1004)
Q Consensus 857 ~~~~m 861 (1004)
..+.-
T Consensus 94 ~l~~~ 98 (476)
T KOG0376|consen 94 DLEKV 98 (476)
T ss_pred HHHHh
Confidence 76653
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.42 E-value=14 Score=30.04 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~ 791 (1004)
+....++|+..+++..+...-+|+. ...+|++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666655543333332 4455666666666666666555
No 349
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.25 E-value=91 Score=34.74 Aligned_cols=123 Identities=12% Similarity=0.073 Sum_probs=72.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCHh--HHHHHHHHHh--ccCCHHHHHHHHHHhHhhcCC-CCCCchHHHHHHHHHhc
Q 001852 708 VFARHGYFQKAIETFDEMLKYVKPDHV--TFVSLLSACN--HGGLVDKGLQYYNTMTTEFGV-PAGIEHCVCIIDLLGRS 782 (1004)
Q Consensus 708 ~~~~~g~~~~A~~l~~~m~~~~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~y~~lv~~l~r~ 782 (1004)
.+-.++++..|.++|+++...++++.. .+..+..+|. ..-++++|.+.++........ .-...+...++......
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 219 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKAL 219 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 344788999999999999986455443 3344444443 467788999999987664211 11223444444444333
Q ss_pred CChHHHHHHHHhCCCCCC-HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhc
Q 001852 783 GRLAEAETFINKMPVTPN-DLVWRSLLASSKI--HGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 783 g~~~eA~~~i~~m~~~p~-~~~~~~ll~~~~~--~g~~e~a~~~~~~~~~l 830 (1004)
..+..+.+....-+-+|. ..+..-+.+|-+. .|+++.|..-+-+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 220 ESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333333333322222222 2355556666653 58999998888888874
No 350
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=61.13 E-value=26 Score=39.04 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=60.6
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhc---CChH
Q 001852 710 ARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRS---GRLA 786 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~---g~~~ 786 (1004)
...|++.+|+..|+.++.. ..+.........+++.++.....+ | .....+.+-.|. ...+
T Consensus 215 ~t~gKF~eA~~~Fr~iL~~---------i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~~~ 277 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILHS---------IPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDPVE 277 (422)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------HHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTTHH
T ss_pred HhcCCHHHHHHHHHHHHHH---------hheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccchh
Confidence 4679999999999998764 122222233345566666655543 1 112222333222 1222
Q ss_pred HHH---HH---HHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 001852 787 EAE---TF---INKMPVTPNDL--VWRSLLASSKIHGNVELAKKAAEHLFELDPS 833 (1004)
Q Consensus 787 eA~---~~---i~~m~~~p~~~--~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~ 833 (1004)
+.. ++ +..-++.|... ++++-++.+.+++|+-.|-..+++++++.|.
T Consensus 278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 222 22 22235677654 6777788899999999999999999999885
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.12 E-value=24 Score=36.77 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=59.7
Q ss_pred cCCCCCcchhhhHHHHhhcCCChhhHHHhhccCCC-C------chhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh
Q 001852 156 VGLLCDVFVGTSLLHFYGTYGHINKARRVFEEMPV-R------NVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNE 228 (1004)
Q Consensus 156 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 228 (1004)
.|......+-..++..-.....++++...+-+.++ | +...+ +.++ ++-.-++++++.++..=...|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 34444555555666665666677777776665542 2 11111 1122 22334566777777776777777777
Q ss_pred hhHHHHHHHhcccCChhhhHHHHHHHHHhc
Q 001852 229 NTFAAVITSCGLTENDLLGYLFLGHVIKFG 258 (1004)
Q Consensus 229 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 258 (1004)
+++..+++.+.+.++...|.++.-+|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 777777777777777766666665555443
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.04 E-value=9.8 Score=36.46 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhccCCCHhHHHHHHHHH---hccCCHHHHHHHHHHhHhhc----CCCCCC-chHHHHHHHHHhcCChHH
Q 001852 716 QKAIETFDEMLKYVKPDHVTFVSLLSAC---NHGGLVDKGLQYYNTMTTEF----GVPAGI-EHCVCIIDLLGRSGRLAE 787 (1004)
Q Consensus 716 ~~A~~l~~~m~~~~~pd~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~----~~~p~~-~~y~~lv~~l~r~g~~~e 787 (1004)
+.|.+.++.-....+.|...++.-..|+ ++-....++.++++..++++ .+.|+. +.+-|+..+|...|.+
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l-- 85 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL-- 85 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh--
Confidence 3444444443332233555444433333 44444566666666665442 355554 5555555555433321
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCc
Q 001852 788 AETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIK 867 (1004)
Q Consensus 788 A~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 867 (1004)
.||..- ....+++|...++++.+.+|+|..+...|-- -.+|-++-.++..++..
T Consensus 86 ----------~~d~~~---------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~-------~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 86 ----------TPDTAE---------AEEYFEKATEYFQKAVDEDPNNELYRKSLEM-------AAKAPELHMEIHKQGLG 139 (186)
T ss_dssp -------------HHH---------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH-------HHTHHHHHHHHHHSSS-
T ss_pred ----------cCChHH---------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-------HHhhHHHHHHHHHHHhh
Confidence 122110 0112678888999999999998665444322 13455555555554443
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=60.38 E-value=16 Score=41.26 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=63.3
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC--CchHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAG--IEHCVCIIDLLGRSGRLAEAETFINKM-P-VTPNDLVWRSLLASSKIHGNVELA 820 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~i~~m-~-~~p~~~~~~~ll~~~~~~g~~e~a 820 (1004)
-.|+...|...+.... ...|- -.....+..++.+.|...+|-.++... . ....+.+..+++.++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566666666665553 33332 133444566666667777777766553 2 233345677888888888999999
Q ss_pred HHHHHHHHhcCCCCCCCeehh
Q 001852 821 KKAAEHLFELDPSDDSSYVLY 841 (1004)
Q Consensus 821 ~~~~~~~~~l~p~~~~~~~~l 841 (1004)
.+.++.+++++|+++..-..|
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHH
Confidence 999999999999998765544
No 354
>PF15161 Neuropep_like: Neuropeptide-like
Probab=60.24 E-value=2.3 Score=30.89 Aligned_cols=12 Identities=42% Similarity=0.977 Sum_probs=9.8
Q ss_pred eccccccCCccc
Q 001852 959 KNLRVCSDCHSV 970 (1004)
Q Consensus 959 kn~r~c~dch~~ 970 (1004)
-.-|-|.|||.+
T Consensus 11 aesRPCVDCHAF 22 (65)
T PF15161_consen 11 AESRPCVDCHAF 22 (65)
T ss_pred CCCCCchhhHHH
Confidence 357999999976
No 355
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.85 E-value=1.5e+02 Score=30.16 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=46.5
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 710 ARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
..|+++++|++++-.-. +.|+... -++.++...|..+.|+.+++.+.- ...+.+....+..+ ...|.+.||.
T Consensus 89 LD~~~~~~A~~~L~~ps--~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 89 LDHGDFEEALELLSHPS--LIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred hChHhHHHHHHHhCCCC--CCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 34555666665552210 2222211 244555556666677766665521 11111222222233 3346777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001852 790 TFINKMPVTPNDLVWRSLLASSKIHG 815 (1004)
Q Consensus 790 ~~i~~m~~~p~~~~~~~ll~~~~~~g 815 (1004)
.+.++.+-+-....|..++..|..+.
T Consensus 161 ~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 161 SFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 77766643222345666666655443
No 356
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.99 E-value=2.3e+02 Score=29.58 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=45.4
Q ss_pred ChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHH-HHHHHhc
Q 001852 667 DPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVS-LLSACNH 745 (1004)
Q Consensus 667 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~-ll~a~~~ 745 (1004)
|+.....+...|.+.|++.+|+.-|-....++...+-.++.-....|... +.-.|.+ .+--|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~---------------e~dlfi~RaVL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS---------------EADLFIARAVLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-----------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc---------------chhHHHHHHHHHHHH
Confidence 77888889999999999999887775544433333322222222222222 2222221 2223556
Q ss_pred cCCHHHHHHHHHHhHhh
Q 001852 746 GGLVDKGLQYYNTMTTE 762 (1004)
Q Consensus 746 ~g~~~~a~~~~~~m~~~ 762 (1004)
.|++..|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67888888888777654
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.81 E-value=41 Score=32.36 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-------hhccCCC-HhHHHHHHHHHhccCC----HHHHHHHHHHhHhhc----C
Q 001852 701 SWNILISVFARHGYFQKAIETFDEM-------LKYVKPD-HVTFVSLLSACNHGGL----VDKGLQYYNTMTTEF----G 764 (1004)
Q Consensus 701 ~~~~li~~~~~~g~~~~A~~l~~~m-------~~~~~pd-~~t~~~ll~a~~~~g~----~~~a~~~~~~m~~~~----~ 764 (1004)
-|..-+.-+++..++.++.+++++. +. +.|+ +.++..+..|+...|. ..+|..+|++..+.| .
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555555555444 44 7885 4788888888876553 234444444443221 2
Q ss_pred CCCCCchHHHHHHHH
Q 001852 765 VPAGIEHCVCIIDLL 779 (1004)
Q Consensus 765 ~~p~~~~y~~lv~~l 779 (1004)
.+|+.+.|.--.++.
T Consensus 109 ~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 109 EDPNNELYRKSLEMA 123 (186)
T ss_dssp H-TT-HHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 466666666444443
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.39 E-value=24 Score=34.89 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHH
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
.+.+..|+..++.-++-+|.|......|-.+|+-+|+|++|..-
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Q 57 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQ 57 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHH
Confidence 34444455555555555555555555555555555555555443
No 359
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.90 E-value=79 Score=36.16 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=68.8
Q ss_pred HHHhhHHhcCChhhHhhhcCCCCCC--Ch---hHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhcc
Q 001852 673 AAMDMYGKCGEIGDVLRIAPQPVDR--PR---LSWNILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHG 746 (1004)
Q Consensus 673 ~li~~y~k~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~ 746 (1004)
.|+.-|.+++++++|..++..|.-. .. .+.+.+.+.+.+..-..+.+..++.++.. ..|-...-......|..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d- 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD- 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-
Confidence 5677888999999999998888632 12 23444555555655566666777777766 43322211111111111
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001852 747 GLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKK 822 (1004)
Q Consensus 747 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~ 822 (1004)
-=.+-|+++|.. +-|.+++++|.-+.-... +...+.-+-..-...|+.++|..
T Consensus 492 ~V~~~aRRfFhh--------------------LLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 492 PVSDLARRFFHH--------------------LLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHHHHHHH--------------------HHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhhc
Confidence 011223333333 346788888888876653 12222223333345677777754
No 360
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.86 E-value=1.9e+02 Score=32.49 Aligned_cols=196 Identities=15% Similarity=0.205 Sum_probs=104.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCC------CHhHHHHHHHHHhccCCHHHHHHHHHHh---HhhcCCCCCCchHH
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKYVKP------DHVTFVSLLSACNHGGLVDKGLQYYNTM---TTEFGVPAGIEHCV 773 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~~~p------d~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~y~ 773 (1004)
-.....|..+....+|+++.......+.| -.+|+..+ ..+....+.++|+.+++-. +..-...|
T Consensus 104 yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~-~l~~~t~q~e~al~~l~vL~~~~~~~~~~~------ 176 (696)
T KOG2471|consen 104 YNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSD-LLAAETSQCEEALDYLNVLAEIEAEKRMKL------ 176 (696)
T ss_pred hhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccc------
Confidence 33444455566666777776665544222 12344322 2344455667777765544 33222223
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-C---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 774 CIIDLLGRSGRLAEAETFINKMP-V---------TPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 774 ~lv~~l~r~g~~~eA~~~i~~m~-~---------~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
.|+-.++-.+.+..+ - .|...+..--..++....++..+++-.+.++-...+.+.+..+-++
T Consensus 177 --------~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq 248 (696)
T KOG2471|consen 177 --------VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQ 248 (696)
T ss_pred --------cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHH
Confidence 233344444444432 0 1111111122334455678888888888888888877888888999
Q ss_pred HhhhcCCchHHHHHHHHHhhCCCccCCc------c-cEEEeCC--eEEEEecCCCCCCC-hHHHHHHHHHHHHHHHHcCc
Q 001852 844 VCAATGRWDDVENVRRQMGWNKIKKKPA------C-SWVKSKD--GVNSFGMGDHSHPD-TEHIYAKLEELKKMIKEAGY 913 (1004)
Q Consensus 844 ~y~~~g~~~~a~~~~~~m~~~~~~k~~g------~-s~i~~~~--~~~~f~~~d~~h~~-~~~i~~~l~~l~~~~~~~g~ 913 (1004)
.++..|++.+|.++.- ..++.+.|| + +.|-.+| -|| |..| .|-. +.-....|+....+++. |+
T Consensus 249 ~eY~~gn~~kA~KlL~---~sni~~~~g~~~T~q~~~cif~NNlGcIh-~~~~--~y~~~~~~F~kAL~N~c~qL~~-g~ 321 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLL---VSNIHKEAGGTITPQLSSCIFNNNLGCIH-YQLG--CYQASSVLFLKALRNSCSQLRN-GL 321 (696)
T ss_pred HHHHhcchHHHHHHHH---hcccccccCccccchhhhheeecCcceEe-eehh--hHHHHHHHHHHHHHHHHHHHhc-cC
Confidence 9999999999987533 235555555 3 4454343 344 3333 1211 12222334444455544 77
Q ss_pred cCCCCcc
Q 001852 914 VPDTSFA 920 (1004)
Q Consensus 914 ~~~~~~~ 920 (1004)
.|.+-+.
T Consensus 322 ~~~~~~t 328 (696)
T KOG2471|consen 322 KPAKTFT 328 (696)
T ss_pred CCCccee
Confidence 7765543
No 361
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.34 E-value=15 Score=23.54 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 001852 705 LISVFARHGYFQKAIETFDEMLK 727 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~ 727 (1004)
+..++.+.|+.++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555566666666665555
No 362
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.17 E-value=76 Score=29.55 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=47.7
Q ss_pred hhHHHHHhhCCCCHHHHHHHHhhCC---------CCCcchHHHHHHHHHhCCC-chhHHHHHHHHHHcCCCCChhhHHHH
Q 001852 266 ANSLISMFGNFGSVKEARCIFDSMH---------VRDTISWNSMISVYSHSGL-CDQSLKCFHWMRHVGQEINSTTFSTL 335 (1004)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~~f~~m~---------~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 335 (1004)
.|.++.-....+.......+++.+. ..+-.+|++++.+.++... ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455554444455555555444442 2355677777777766555 33466777777777777777778888
Q ss_pred HHhhcCC
Q 001852 336 LSACGSV 342 (1004)
Q Consensus 336 l~a~~~~ 342 (1004)
+++|.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7777554
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.89 E-value=78 Score=35.58 Aligned_cols=82 Identities=7% Similarity=0.065 Sum_probs=42.5
Q ss_pred HHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-C
Q 001852 718 AIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-P 796 (1004)
Q Consensus 718 A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~ 796 (1004)
...+|+.....++-|...|...+.-|-+.+.+.+-..+|..|...|+..|+...|++. ..|...-.++-|..++.+. .
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhh
Confidence 3444444444444455555555555555555666666666666655555655555443 3333333355555554443 3
Q ss_pred CCCC
Q 001852 797 VTPN 800 (1004)
Q Consensus 797 ~~p~ 800 (1004)
+.||
T Consensus 169 ~npd 172 (568)
T KOG2396|consen 169 FNPD 172 (568)
T ss_pred cCCC
Confidence 4444
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.19 E-value=6.5 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=14.6
Q ss_pred CeehhhhHhhhcCCchHHHHHH
Q 001852 837 SYVLYSNVCAATGRWDDVENVR 858 (1004)
Q Consensus 837 ~~~~l~~~y~~~g~~~~a~~~~ 858 (1004)
.+..|+.+|...|++++|..+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3456677777777777776653
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.01 E-value=87 Score=29.16 Aligned_cols=79 Identities=9% Similarity=0.239 Sum_probs=53.1
Q ss_pred hhhHHHHhhcCCChhhHHHhhccCC---------CCchhHHHHHHHHHHhCCC-chHHHHHHHHHHHcCCCCChhhHHHH
Q 001852 165 GTSLLHFYGTYGHINKARRVFEEMP---------VRNVVSWTSLMVAYLDNGS-PIEVVDLYRYMRREGVCCNENTFAAV 234 (1004)
Q Consensus 165 ~~~Li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~t~~~l 234 (1004)
.|+++.-....+++....++++.+. ..+-.+|..++.+...... ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555555555555555443 2355678888888866665 44567788888888888888888888
Q ss_pred HHHhcccCC
Q 001852 235 ITSCGLTEN 243 (1004)
Q Consensus 235 l~~~~~~~~ 243 (1004)
+.+|.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 888876533
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.39 E-value=1.3e+02 Score=25.87 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=41.2
Q ss_pred hhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHH
Q 001852 676 DMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFV 737 (1004)
Q Consensus 676 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~ 737 (1004)
..+...|++++|..+.+....||...|-++-. .+.|...++..-+.+|...-.|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASGDPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34556788888888888888888888876643 3566667666666666655555555554
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.06 E-value=1.3e+02 Score=31.32 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=59.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc---cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHh-
Q 001852 706 ISVFARHGYFQKAIETFDEMLKY---VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGR- 781 (1004)
Q Consensus 706 i~~~~~~g~~~~A~~l~~~m~~~---~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r- 781 (1004)
|.+++..|++.+++...-+--+. ++|...-...+ .|++.|......++-..-.++ .-+-...-|..++++|-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 67888888888877654444332 55555444333 478888888888877777664 222333448888777653
Q ss_pred ----cCChHHHHHHHHhCCC
Q 001852 782 ----SGRLAEAETFINKMPV 797 (1004)
Q Consensus 782 ----~g~~~eA~~~i~~m~~ 797 (1004)
.|+++||++++..-+.
T Consensus 167 VLlPLG~~~eAeelv~gs~a 186 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGSAA 186 (309)
T ss_pred HHhccccHHHHHHHHhcCCC
Confidence 7999999999965543
No 368
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.85 E-value=3.6e+02 Score=29.83 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=63.0
Q ss_pred CHhHHHHH---HHHHhccCCHHHHHHHHHHhHhhcCCCCC--CchHHHHHHHHH-hcCChHHHHHHHHhCCC--------
Q 001852 732 DHVTFVSL---LSACNHGGLVDKGLQYYNTMTTEFGVPAG--IEHCVCIIDLLG-RSGRLAEAETFINKMPV-------- 797 (1004)
Q Consensus 732 d~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~-r~g~~~eA~~~i~~m~~-------- 797 (1004)
|..-|.++ +..+.+.|-+..|+++.+-+. .+.|. +..-..+||.|+ |+++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 44444443 446788899999999888875 55665 444456778876 88888877777776422
Q ss_pred -CCCHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHhcCCC
Q 001852 798 -TPNDLVWRSLLASSKIHGNV---------------ELAKKAAEHLFELDPS 833 (1004)
Q Consensus 798 -~p~~~~~~~ll~~~~~~g~~---------------e~a~~~~~~~~~l~p~ 833 (1004)
-|+ ..+..-|+-+ ..++. +.|..+.++++..-|.
T Consensus 176 ~lPn-~a~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 176 LLPN-FAFSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hCcc-HHHHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 122 2333333333 34444 8899999999988883
No 369
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.39 E-value=26 Score=34.85 Aligned_cols=58 Identities=29% Similarity=0.453 Sum_probs=45.7
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 001852 779 LGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDS 836 (1004)
Q Consensus 779 l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~ 836 (1004)
+...|+.+-|-+++++. ...|+ ...|--+...--+.|+++.|.+++++.++++|+|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567777777777776 45555 458888888888899999999999999999998744
No 370
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=51.41 E-value=3.9e+02 Score=29.87 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHH-HH
Q 001852 699 RLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCV-CI 775 (1004)
Q Consensus 699 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-~l 775 (1004)
...|...+..-.+..-.+.|..+|-+..+. +.|+...+.+++.-++ .|+..-|-.+|+.-...++ +...|. -.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~---d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP---DSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC---CchHHHHHH
Confidence 456777787777777778888888888876 5567767776665443 4677778888887655443 332222 23
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhh
Q 001852 776 IDLLGRSGRLAEAETFINKM-P-VTPN--DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYS 842 (1004)
Q Consensus 776 v~~l~r~g~~~eA~~~i~~m-~-~~p~--~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~ 842 (1004)
.+.|.+-++-+.|..++++. | +..+ ..+|..++.--...|++..+...-++..++-|+....-+.++
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 45666788888888888865 2 3333 348888888888889888888888888888887655444443
No 371
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.88 E-value=3.8e+02 Score=29.57 Aligned_cols=136 Identities=10% Similarity=0.072 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHH--hcCCHHHHHHHHHHHhhc-cCCCHhHHHH--------HHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 001852 699 RLSWNILISVFA--RHGYFQKAIETFDEMLKY-VKPDHVTFVS--------LLSACNHGGLVDKGLQYYNTMTTEFGVPA 767 (1004)
Q Consensus 699 ~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~-~~pd~~t~~~--------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 767 (1004)
+..|--++..+. ...++++|.++-+..+.. ..-|..|+.. +-.++...|+...-...+....+.-.+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 445555555543 347788888888776655 3345444443 33356677777777777766655434443
Q ss_pred CC----chHHHHHHHHHhcCChHHHHHHHHhCCCC--CCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 768 GI----EHCVCIIDLLGRSGRLAEAETFINKMPVT--PNDLVWRSLL----ASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 768 ~~----~~y~~lv~~l~r~g~~~eA~~~i~~m~~~--p~~~~~~~ll----~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
+. .-.+|+.+.|--.+.++.|.+++.+.+.. ....-|.-.+ ..-..++++..|.+.+-+++...|++
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 33 33566777777789999999999988532 2222343322 22356789999999999988888864
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.78 E-value=2e+02 Score=32.45 Aligned_cols=148 Identities=12% Similarity=0.144 Sum_probs=67.5
Q ss_pred HHHHhhcCCChhhHHHhhccCCCCchh--HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC----hhhHHHHHHHhccc
Q 001852 168 LLHFYGTYGHINKARRVFEEMPVRNVV--SWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCN----ENTFAAVITSCGLT 241 (1004)
Q Consensus 168 Li~~y~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~ 241 (1004)
.+...++.|+.+-+.-+++.-..++.. ...+.+...++.|+.+.+..+++ .|...+ ..-. +.+..++..
T Consensus 38 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGM-TPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCC-CHHHHHHHh
Confidence 334444555555554444432222211 11223445556777665544443 332221 1111 223333344
Q ss_pred CChhhhHHHHHHHHHhcCCCChhh--hhHHHHHhhCCCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCchhHHHH
Q 001852 242 ENDLLGYLFLGHVIKFGFHYTVPV--ANSLISMFGNFGSVKEARCIFDSMHVR---DTISWNSMISVYSHSGLCDQSLKC 316 (1004)
Q Consensus 242 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l 316 (1004)
|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+++.-... |..-++.|..+ +..|+. ++
T Consensus 113 ~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A-~~~g~~----ei 183 (413)
T PHA02875 113 KKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDI----AI 183 (413)
T ss_pred CCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCH----HH
Confidence 444 45556666776665432 233445555677777766666654322 33333333332 333442 34
Q ss_pred HHHHHHcCCCCCh
Q 001852 317 FHWMRHVGQEINS 329 (1004)
Q Consensus 317 ~~~m~~~g~~p~~ 329 (1004)
.+.+.+.|..|+.
T Consensus 184 v~~Ll~~ga~~n~ 196 (413)
T PHA02875 184 CKMLLDSGANIDY 196 (413)
T ss_pred HHHHHhCCCCCCc
Confidence 4455556655553
No 373
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.57 E-value=16 Score=29.92 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=38.8
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 783 GRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 783 g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
+.+++|.+.|++.- .+-..|+.+.|...|++.++.=-+-.++-+- .+...-.|++|.+++.+|+
T Consensus 3 ~~~~~A~~~I~kaL-------------~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~ 66 (79)
T cd02679 3 GYYKQAFEEISKAL-------------RADEWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMK 66 (79)
T ss_pred hHHHHHHHHHHHHh-------------hhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHH
Confidence 34677777776641 1123377777777777777631111111111 3345567999999999998
Q ss_pred h
Q 001852 863 W 863 (1004)
Q Consensus 863 ~ 863 (1004)
+
T Consensus 67 ~ 67 (79)
T cd02679 67 T 67 (79)
T ss_pred H
Confidence 5
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.66 E-value=85 Score=30.98 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHhHhhcCC--CCCCchHHHHHHHHHhcCChHHH
Q 001852 746 GGLVDKGLQYYNTMTTEFGV--PAGIEHCVCIIDLLGRSGRLAEA 788 (1004)
Q Consensus 746 ~g~~~~a~~~~~~m~~~~~~--~p~~~~y~~lv~~l~r~g~~~eA 788 (1004)
..+.++++.++....+.+.- .++++.+..|+.++-+.|++++|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555555544432211 23444444555555555554444
No 375
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.51 E-value=27 Score=41.63 Aligned_cols=98 Identities=19% Similarity=0.281 Sum_probs=70.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001852 739 LLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVE 818 (1004)
Q Consensus 739 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e 818 (1004)
++.-+-+.|-.+-|+.+.+.=...+ ++....|+++.|++..++. .|..+|..|+..-..+||.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchH
Confidence 3334456677777776555433332 3344689999999998876 46789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhh
Q 001852 819 LAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 819 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.||..+++.-. +.-|+-+|.-.|+.++- +|+|+-
T Consensus 690 IaEm~yQ~~kn--------fekLsfLYliTgn~eKL---~Km~~i 723 (1202)
T KOG0292|consen 690 IAEMCYQRTKN--------FEKLSFLYLITGNLEKL---SKMMKI 723 (1202)
T ss_pred HHHHHHHHhhh--------hhheeEEEEEeCCHHHH---HHHHHH
Confidence 99999998754 45677788888887654 444443
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.62 E-value=1.3e+02 Score=27.49 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=34.9
Q ss_pred CCCCchHHHHHHHHHhcCChHHH---HHHHHhC-C-CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 001852 766 PAGIEHCVCIIDLLGRSGRLAEA---ETFINKM-P-VTPNDL--VWRSLLASSKIHGNVELAKKAAEHLFELDPSD 834 (1004)
Q Consensus 766 ~p~~~~y~~lv~~l~r~g~~~eA---~~~i~~m-~-~~p~~~--~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~ 834 (1004)
.++.++--.+..++.+..+.++- ..++++. + -.|+.. -..-|.-+|.+.|+++.+.+..+.+++.+|+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 44445545566666666554433 3344433 2 222211 11123335666667777777777777766654
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.53 E-value=3e+02 Score=28.72 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=23.9
Q ss_pred chhHHhHHhhHHHHcCChhhHHHHHhcCCCCCHhHH
Q 001852 566 HKYVQNSLITMYAKCGDLNSSNYIFEGLAEKNSVTW 601 (1004)
Q Consensus 566 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~ 601 (1004)
|+.....+...|.+.|++.+|+.-|---..++...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 667777888888899998888888765544444333
No 378
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.52 E-value=3.6e+02 Score=28.39 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=37.8
Q ss_pred CCCchHHHHHHHHHHHhcCChhhHHHHHhcCC-----CCCcchHHHHHHHHHcCCCHHHHHHHH
Q 001852 360 LNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMS-----ERDSVSWNSLVASHVQDEKYIDALKIF 418 (1004)
Q Consensus 360 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~ 418 (1004)
-.++..+....|..+++.+++..-.++++... ..|...|...|......|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34555566666666666777766666665543 247777888888888877765444443
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.63 E-value=5.9e+02 Score=30.58 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=41.7
Q ss_pred CCHHHHHHHHhhCCC-------CCcchHHHHHHHH--HhCCCchhHHHHHHHHHHcCC---------CCChhhHHHHHHh
Q 001852 277 GSVKEARCIFDSMHV-------RDTISWNSMISVY--SHSGLCDQSLKCFHWMRHVGQ---------EINSTTFSTLLSA 338 (1004)
Q Consensus 277 g~~~~A~~~f~~m~~-------~d~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~---------~p~~~t~~~ll~a 338 (1004)
++...|.+.++.+.. +-+..+-.++.+. .+.+..+++++.++++..... .|-..++..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 566666666665431 1122222333332 245556777777776643221 2334556666665
Q ss_pred hc--CCCChhhHHHHHHHHH
Q 001852 339 CG--SVDNLKWGRGIHGLAV 356 (1004)
Q Consensus 339 ~~--~~~~~~~a~~~~~~~~ 356 (1004)
|+ ..|+.+.+.+.+..+.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 54 4566666666655554
No 380
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=46.06 E-value=25 Score=32.06 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=49.8
Q ss_pred EEEeCCeEEEEecCC-CCCCChHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccCCCC
Q 001852 874 WVKSKDGVNSFGMGD-HSHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEG 952 (1004)
Q Consensus 874 ~i~~~~~~~~f~~~d-~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~ 952 (1004)
|+.-.+..-.|..|| ..||++..+--+|++|.++..... -.+.--|+++ .+.||--||+.+.|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~----v~~akVDiD~----------~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT----WQVAIADLEQ----------SEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc----eEEEEEECCC----------CHHHHHHcCCccCC--
Confidence 444445566799999 789999999999999988773110 1223334443 46799999999888
Q ss_pred CcEEEeecc
Q 001852 953 STIRIFKNL 961 (1004)
Q Consensus 953 ~~~~~~kn~ 961 (1004)
++-++||=
T Consensus 94 -TLl~FkdG 101 (132)
T PRK11509 94 -ATLVFTGG 101 (132)
T ss_pred -EEEEEECC
Confidence 56666664
No 381
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=45.97 E-value=5.4e+02 Score=29.97 Aligned_cols=181 Identities=9% Similarity=-0.067 Sum_probs=112.8
Q ss_pred chhHHhHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 001852 566 HKYVQNSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAA 642 (1004)
Q Consensus 566 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 642 (1004)
+...|..-++.-.+.|+.+.....|+...-+ =...|--.+.-....|+.+-|-.++..-.+--++-...+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777888888899999999999887655 2335555555555558888887777665544222222222222223
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCChhhHh---hhcCCCCC--CChhHHHHHHHH-----HHhc
Q 001852 643 AAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVL---RIAPQPVD--RPRLSWNILISV-----FARH 712 (1004)
Q Consensus 643 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~~ 712 (1004)
+-..|+...|+.+++.+...- +.-+.+-..-+.+-.+.|..+.+. +++..... .+....+.+..- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 455678999999998887654 333444445566777888888877 44433321 222222223222 2345
Q ss_pred CCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccC
Q 001852 713 GYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGG 747 (1004)
Q Consensus 713 g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g 747 (1004)
++.+.|..++.+|.+.++++..-|..++.-+...+
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 78888888888888866667777777776554443
No 382
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.21 E-value=38 Score=35.19 Aligned_cols=62 Identities=15% Similarity=0.297 Sum_probs=43.1
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehh
Q 001852 780 GRSGRLAEAETFINKM-PVTPNDL-VWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLY 841 (1004)
Q Consensus 780 ~r~g~~~eA~~~i~~m-~~~p~~~-~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l 841 (1004)
.+.|+.++|..+++.. .+.|+.. +..-+..-...++++-+|.+.+-+++.++|.|+.+.+.-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 3678888888887664 5555533 444444445566788888899999999998887765543
No 383
>PF15469 Sec5: Exocyst complex component Sec5
Probab=45.07 E-value=64 Score=31.58 Aligned_cols=116 Identities=19% Similarity=0.275 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CCchHHHHHHHHHh
Q 001852 703 NILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPA-GIEHCVCIIDLLGR 781 (1004)
Q Consensus 703 ~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r 781 (1004)
..++..-.+......++.++++..-. ...-.-+.-|.+.|+++.+...|.+....++-.. ....+
T Consensus 61 ~pll~~~~k~~~l~~~l~~l~r~~fl-----F~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf--------- 126 (182)
T PF15469_consen 61 KPLLERREKADKLRNALEFLQRNRFL-----FNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVF--------- 126 (182)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHH---------
Confidence 33344334444555566666665543 1111456677888999999988888876543322 11111
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCee
Q 001852 782 SGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYV 839 (1004)
Q Consensus 782 ~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~ 839 (1004)
..-+.|..+.++... ..+|..|.... ...+....+.+.+++|+|++.+++.
T Consensus 127 ~~v~~eve~ii~~~r----~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 127 QKVWSEVEKIIEEFR----EKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 112344444443331 22444443322 5677788888888888886655444
No 384
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=45.05 E-value=1.5e+02 Score=25.71 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHH
Q 001852 717 KAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIID 777 (1004)
Q Consensus 717 ~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 777 (1004)
+..+-++.+... +.|+.....+.|.||.+.+++.-|.++|+..+.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 444455555555 889999999999999999999999999998887544 33446666553
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.44 E-value=5e+02 Score=32.25 Aligned_cols=177 Identities=16% Similarity=0.089 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG 679 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 679 (1004)
-|..|+..|...|..++|+++|.+....--.-|... .+.-..+.+++.+.+-+ +. .|+--|+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~-~~----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGAE-NL----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhccc-ch----hHHHHHh
Confidence 477889999999999999999998875311111110 01111133333333322 11 1111121
Q ss_pred ---hcCChhhHhhhcCCCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhcc--------
Q 001852 680 ---KCGEIGDVLRIAPQPVDRPRLSWN-ILISVFARHGYFQKAIETFDEMLKY-VKPDHVTFVSLLSACNHG-------- 746 (1004)
Q Consensus 680 ---k~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~-------- 746 (1004)
-..+.+...++|..-......+.+ .-+-.|......+-++.+++.+... -.++..-.+.++.-|...
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Confidence 124455566666551110001111 1223455566677778888888776 445555555555444321
Q ss_pred CCHHHHHHH-----HHHhHh-hcCCCCC--------CchHHHHHHHHHhcCChHHHHHHHHh
Q 001852 747 GLVDKGLQY-----YNTMTT-EFGVPAG--------IEHCVCIIDLLGRSGRLAEAETFINK 794 (1004)
Q Consensus 747 g~~~~a~~~-----~~~m~~-~~~~~p~--------~~~y~~lv~~l~r~g~~~eA~~~i~~ 794 (1004)
+.-+++.+. ...+.+ .....|. ...|--..-+++|.|+.++|..++-.
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~ 709 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVH 709 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 111122222 111111 0122222 24455555677799999999987644
No 386
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.27 E-value=1.1e+02 Score=36.14 Aligned_cols=28 Identities=18% Similarity=-0.098 Sum_probs=23.8
Q ss_pred ccccCCcccceeeeeeeeeEEEEeCCCc
Q 001852 962 RVCSDCHSVYKFISKIVRRRIILRDPYR 989 (1004)
Q Consensus 962 r~c~dch~~~k~~s~~~~r~i~~rd~~r 989 (1004)
.-|..-|.|.=-.|+|-|--+.-||.+.
T Consensus 489 ~~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 489 QKLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhhcCceeeeeehhceecccccccccce
Confidence 3588889998889999999999998776
No 387
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=44.09 E-value=4.1e+02 Score=28.02 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHHHHccCChHHHHHHHhcCC-----CCCeechhhhhHHhhhCCChh
Q 001852 462 HDNLIVGNALVSMYAKSGMMSEAKQVFRIMP-----KRDTVTWNALIGGHSEKEEPD 513 (1004)
Q Consensus 462 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~ 513 (1004)
.++..+...++..+++.+++.+-.++++... ..|...|..+|..-...|+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 4555556666666666666666666665532 236666777777777777654
No 388
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.70 E-value=18 Score=23.03 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCeehhh
Q 001852 815 GNVELAKKAAEHLFELDPSDDSSYVLYS 842 (1004)
Q Consensus 815 g~~e~a~~~~~~~~~l~p~~~~~~~~l~ 842 (1004)
|+.+.+..+++++++..|.++..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 5678888888888888887666555443
No 389
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.53 E-value=7.5e+02 Score=30.85 Aligned_cols=127 Identities=15% Similarity=0.083 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhh
Q 001852 195 SWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFG 274 (1004)
Q Consensus 195 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 274 (1004)
-|..|+.-|...|+.++|++++.+....--.-|.. ..+.-..+.+.+.+.+-+.. .||-.|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~~~-----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAENL-----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhcccch-----hHHHHHh
Confidence 37889999999999999999999987632101110 00111123333333332211 1111121
Q ss_pred ---CCCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhc
Q 001852 275 ---NFGSVKEARCIFDSMHV--RDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACG 340 (1004)
Q Consensus 275 ---~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 340 (1004)
-..+.+...++|-.-.. -...+-.. +-.|......+-++..++.+....-.++..-.+.++.-|.
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDD-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHH-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 12344555555544111 01111112 2245666677777778888776655556655555555443
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.24 E-value=1.1e+03 Score=32.77 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-----C-----CCCCHH
Q 001852 733 HVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-----P-----VTPNDL 802 (1004)
Q Consensus 733 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-----~-----~~p~~~ 802 (1004)
..+|......+..+|+++.|..+.-...+. + . ++.+.-.+..+-..|+-..|+..+++. | .+|.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~-r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES-R-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 357888888888899999998876665442 2 2 344555677788889989998887653 1 111122
Q ss_pred HHHHHHHH--------HH-hcCC--HHHHHHHHHHHHhcCCCCCCCeehhhhHh
Q 001852 803 VWRSLLAS--------SK-IHGN--VELAKKAAEHLFELDPSDDSSYVLYSNVC 845 (1004)
Q Consensus 803 ~~~~ll~~--------~~-~~g~--~e~a~~~~~~~~~l~p~~~~~~~~l~~~y 845 (1004)
.-+.++.. +. ..|| .+.-.+.+..+.+..|+....|+.|+.-|
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 22222111 22 2244 34567889999999998888899998444
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.01 E-value=1.8e+02 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 001852 600 TWNAMIAANALHGQGEEVLKLLVKMRH 626 (1004)
Q Consensus 600 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 626 (1004)
-|..|+.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999877
No 392
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=42.83 E-value=1.4e+02 Score=25.62 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHH
Q 001852 715 FQKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCII 776 (1004)
Q Consensus 715 ~~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 776 (1004)
.-++.+-++.+... +.|+.....+.|.||.+.+++.-|.++|+..+.+-+. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 33444555555555 7888888899999999999999999999988754333 344555544
No 393
>PRK10941 hypothetical protein; Provisional
Probab=41.77 E-value=82 Score=33.04 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=41.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 775 IIDLLGRSGRLAEAETFINKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 775 lv~~l~r~g~~~eA~~~i~~m-~~~p~-~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
+-.+|.+.++++.|+...+.+ .+.|+ +.-|+--+-.+...|....|..-++..++..|+++.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 445566667777777766665 34454 3356666666777777777777777777777777654
No 394
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.65 E-value=5.4e+02 Score=29.65 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=11.7
Q ss_pred hHHHHHHHccCChhHHHHHhccc
Q 001852 64 NTLINMYFKFGCLGYARYVFDKM 86 (1004)
Q Consensus 64 ~~li~~~~~~g~~~~A~~~f~~~ 86 (1004)
.+.+...++.|+.+-...+++.-
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll~~g 58 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILLDNG 58 (480)
T ss_pred chhhhhhhccCCHHHHHHHHHcC
Confidence 34444455555555555555443
No 395
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.36 E-value=6.1e+02 Score=28.65 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=55.4
Q ss_pred CCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhC---CCCCcchHHHHH
Q 001852 225 CCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSM---HVRDTISWNSMI 301 (1004)
Q Consensus 225 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~d~~~~~~li 301 (1004)
..+......++..+ .|+...+..+++.+...+-.. ..+...++++.. ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 45555555555544 577777777776655431111 122233333321 122333445556
Q ss_pred HHHHh---CCCchhHHHHHHHHHHcCCCCChhhHHHHHHhh
Q 001852 302 SVYSH---SGLCDQSLKCFHWMRHVGQEINSTTFSTLLSAC 339 (1004)
Q Consensus 302 ~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 339 (1004)
+++.+ .++.+.|+..+..|.+.|..|....-..+..++
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66655 578999999999999999887755544444443
No 396
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=39.20 E-value=33 Score=29.48 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=50.0
Q ss_pred hhhhhhhHHHHHHHHhhccCCCCCcEEEeeccccccCCcccceeeeeeeeeEEEEeCCC
Q 001852 930 EHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSVYKFISKIVRRRIILRDPY 988 (1004)
Q Consensus 930 ~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 988 (1004)
+..|..|.|.-++--=-.+..+|..+-|.--.+-|..|-.+|.-.|.-.|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 55688999988875544555569999999999999999999999999999999998754
No 397
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.87 E-value=94 Score=23.22 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=23.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHH
Q 001852 705 LISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSL 739 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~l 739 (1004)
+..|+.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~-~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE-IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH-HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh-hCCCcHHHHHH
Confidence 55677888899999988888888 57865544433
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.77 E-value=79 Score=31.27 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 796 PVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 796 ~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
...|++.++..++.++...|+.++|++..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4568888888888888888888888888888888888
No 399
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.62 E-value=3e+02 Score=28.01 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=64.9
Q ss_pred CChhhHhhhcCCCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 001852 682 GEIGDVLRIAPQPVD-RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 682 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
+++++|.+.+..-.. ++-.. -++.++...|+.+.|+.+++.+.-. ..+......++.+ ...|.+.||+.+-++..
T Consensus 92 ~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~-l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 92 GDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP-LSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC-CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 566777776644322 22222 3677777789999999998886532 1122222223333 55589999998777654
Q ss_pred hhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 001852 761 TEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVW 804 (1004)
Q Consensus 761 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~ 804 (1004)
+. -....+.+++..+.....-....+.+-.+|+.+...-|
T Consensus 168 ~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~ 207 (226)
T PF13934_consen 168 DE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQW 207 (226)
T ss_pred hh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHH
Confidence 31 11344555665555333223344555567887766543
No 400
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.74 E-value=6.7e+02 Score=28.34 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=53.5
Q ss_pred CCChhhHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcC---CCCCcchHHHHH
Q 001852 326 EINSTTFSTLLSACGSVDNLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEM---SERDSVSWNSLV 402 (1004)
Q Consensus 326 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li 402 (1004)
..+......++..+ .|+...+..+++.+...+-..+. +...++++.. ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444555555443 57777777777665543211111 1122222211 112223345555
Q ss_pred HHHHc---CCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhh
Q 001852 403 ASHVQ---DEKYIDALKIFSNMLQKQRLVNYVTFTSALAAC 440 (1004)
Q Consensus 403 ~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 440 (1004)
+++.+ ..+.+.|+..+..|.+.|..|....-..+..++
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55554 578999999999999998888755544444443
No 401
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.68 E-value=28 Score=36.10 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=54.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCCeEEEEecCCCC
Q 001852 811 SKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKDGVNSFGMGDHS 890 (1004)
Q Consensus 811 ~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~ 890 (1004)
.++.|+.|.|...+++++.+.|+++.+..-++.......+.-+|...+-+ .+.-.||-|-- .+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~----ALtisP~nseA--------LvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK----ALTISPGNSEA--------LVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe----eeeeCCCchHH--------Hhhhhcc
Confidence 56789999999999999999999999888888877766666666665543 23334554422 2334566
Q ss_pred CCChHHHHH
Q 001852 891 HPDTEHIYA 899 (1004)
Q Consensus 891 h~~~~~i~~ 899 (1004)
-|...+|..
T Consensus 194 ~plV~~iD~ 202 (472)
T KOG3824|consen 194 TPLVSAIDR 202 (472)
T ss_pred chHHHHHHH
Confidence 677666654
No 402
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.45 E-value=2.5e+02 Score=30.16 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=51.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc----cCCCHhHHHHH--HHHHhccCCHHHHHHHHHHhHhh----cCCCCCC-chHH
Q 001852 705 LISVFARHGYFQKAIETFDEMLKY----VKPDHVTFVSL--LSACNHGGLVDKGLQYYNTMTTE----FGVPAGI-EHCV 773 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~----~~pd~~t~~~l--l~a~~~~g~~~~a~~~~~~m~~~----~~~~p~~-~~y~ 773 (1004)
++....+.++.++|++.++++.+. -.||.+.|... ...+...|+.+++.+.+++.++. .+++|++ ..|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 444455566888888888888765 45677766533 34556778888888777766551 2666654 2333
Q ss_pred HHHH-HHHhcCChHHHH
Q 001852 774 CIID-LLGRSGRLAEAE 789 (1004)
Q Consensus 774 ~lv~-~l~r~g~~~eA~ 789 (1004)
.+.. .|-+-|++..+.
T Consensus 161 ~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 3433 344456555444
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.68 E-value=1.6e+02 Score=24.96 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 001852 805 RSLLASSKIHGNVELAKKAAEHLFEL 830 (1004)
Q Consensus 805 ~~ll~~~~~~g~~e~a~~~~~~~~~l 830 (1004)
..+.......|+.+.|...+++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444456667777777777777765
No 404
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.37 E-value=36 Score=28.81 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=14.5
Q ss_pred HHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH
Q 001852 824 AEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 824 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
+++.++.+|+|......|+..|...|++++|.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~ 43 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALD 43 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344444444444444444444444444444444
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.57 E-value=1.5e+02 Score=29.18 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHHHHHhhc--cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 001852 711 RHGYFQKAIETFDEMLKY--VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEF 763 (1004)
Q Consensus 711 ~~g~~~~A~~l~~~m~~~--~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 763 (1004)
..++.+......+.+.+. ..|+..+|..++.++...|+.++|.+...++..-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 444444333333333332 67888888888888888888888888888887644
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.68 E-value=3.7e+02 Score=29.66 Aligned_cols=161 Identities=18% Similarity=0.284 Sum_probs=84.2
Q ss_pred hhHHhHHHhhHHhcCChhhHhhhcCCCCC-----CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHH
Q 001852 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPVD-----RP-RLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLS 741 (1004)
Q Consensus 668 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~ 741 (1004)
...+.-+.+-|..||+++.|.+.+.+..+ +. +..|-.+|..-.-.|++......-.+... .|+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s--t~~~-------- 219 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES--TPDA-------- 219 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh--Cchh--------
Confidence 34567789999999999999999988542 11 22454555544555666666655555543 2211
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhC-C--------CCCCHH-HHHHHHHHH
Q 001852 742 ACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-P--------VTPNDL-VWRSLLASS 811 (1004)
Q Consensus 742 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~--------~~p~~~-~~~~ll~~~ 811 (1004)
++.... .+++....+..++.+..+ +++.|.+.+-.. + +.|... +|+. +.+.
T Consensus 220 --------------~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcAL 280 (466)
T KOG0686|consen 220 --------------NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCAL 280 (466)
T ss_pred --------------hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhh
Confidence 112211 345556666667666655 455444433222 1 233333 4433 3333
Q ss_pred HhcCCHHH-----HHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 812 KIHGNVEL-----AKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 812 ~~~g~~e~-----a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
...+.-++ .-..++..++++|+- ...|...|. +++..-.++.+.++
T Consensus 281 Atfdr~~Lk~~vi~n~~Fk~flel~Pql---r~il~~fy~--sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 281 ATFDRQDLKLNVIKNESFKLFLELEPQL---REILFKFYS--SKYASCLELLREIK 331 (466)
T ss_pred ccCCHHHHHHHHHcchhhhhHHhcChHH---HHHHHHHhh--hhHHHHHHHHHHhc
Confidence 33333222 234567777777752 333444442 45555555544444
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.54 E-value=3.2e+02 Score=23.99 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=22.0
Q ss_pred HHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 001852 678 YGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLK 727 (1004)
Q Consensus 678 y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 727 (1004)
+...|++++|...=.....||...|-+|-. .+.|-.+++..-+.++..
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 445555555544444444555555544422 345555555555555443
No 408
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=33.53 E-value=78 Score=25.86 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHHHhhc-cC-CCH-hHHHHHHHHHhccCCHHHHHHHH
Q 001852 711 RHGYFQKAIETFDEMLKY-VK-PDH-VTFVSLLSACNHGGLVDKGLQYY 756 (1004)
Q Consensus 711 ~~g~~~~A~~l~~~m~~~-~~-pd~-~t~~~ll~a~~~~g~~~~a~~~~ 756 (1004)
...+-++|+..+++.++. .. |+. .++..+..|++..|++++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999998887 33 333 46667788999999999888754
No 409
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.46 E-value=1.2e+02 Score=30.72 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH-------HHHHHhcCCC------CCCCeehhhhHhhhcCCchHHHHHHHHHh
Q 001852 802 LVWRSLLASSKIHGNVELAKKA-------AEHLFELDPS------DDSSYVLYSNVCAATGRWDDVENVRRQMG 862 (1004)
Q Consensus 802 ~~~~~ll~~~~~~g~~e~a~~~-------~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 862 (1004)
.++.-+.|.|+..|+.+..... ++++++.+.. ......++|.++...|+.++|.+....+.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3566677778888875544444 4444443322 12356678889999999999988766544
No 410
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=2.9e+02 Score=28.20 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=44.5
Q ss_pred hcCChhhHhhhcCCCC--CCChh-HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHH
Q 001852 680 KCGEIGDVLRIAPQPV--DRPRL-SWNILISVFARHGYFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQY 755 (1004)
Q Consensus 680 k~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~ 755 (1004)
...++++|+..+.+.. .|.+. -|+.-+-.+.+..+++.+.+--.+.++ +.||.+ ....+..+......+++|+..
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3445566666555544 24443 355566666666777766666666665 456554 333344455555566666665
Q ss_pred HHHh
Q 001852 756 YNTM 759 (1004)
Q Consensus 756 ~~~m 759 (1004)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5554
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.16 E-value=54 Score=33.03 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=66.9
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHH-hcCCHH
Q 001852 742 ACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINK-MPVTPNDLVWRSLLASSK-IHGNVE 818 (1004)
Q Consensus 742 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~-m~~~p~~~~~~~ll~~~~-~~g~~e 818 (1004)
-|.....++.|+..+.+.+ .+.|+. ..|..=+-.+.+..+++.+..=-.+ ..+.|+.+-=..+++.+. ....++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3555666777777666654 567766 4455555556667777776654433 367777664444555543 345777
Q ss_pred HHHHHHHHHHhc---CCCCCCCeehhhhHhhhcCCchHHHH--HHHHH
Q 001852 819 LAKKAAEHLFEL---DPSDDSSYVLYSNVCAATGRWDDVEN--VRRQM 861 (1004)
Q Consensus 819 ~a~~~~~~~~~l---~p~~~~~~~~l~~~y~~~g~~~~a~~--~~~~m 861 (1004)
.|+..+.++..+ .|-+++.-+-..-.-++..+|+.... +++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 788777777554 33333333333334455566765443 34444
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.62 E-value=7.2e+02 Score=27.47 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=38.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHH-hcCChhhHhhhcCCC
Q 001852 640 LAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYG-KCGEIGDVLRIAPQP 694 (1004)
Q Consensus 640 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-k~g~~~~A~~~~~~~ 694 (1004)
+..+.+.|.+..|.++...+.......|+...-.+||.|+ ++++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4455677778888888888877777667777777788776 666666566555543
No 413
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.60 E-value=3.9e+02 Score=27.56 Aligned_cols=127 Identities=11% Similarity=0.110 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhc---CC--cCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHh-CCCCch----HH
Q 001852 398 WNSLVASHVQDEKYIDALKIFSNMLQK---QR--LVNYVTFTSALAACSDPGFVVQGKIIHALVITM-GLHDNL----IV 467 (1004)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~----~~ 467 (1004)
.-.||..+.+.+++++.++.|.+|+.- .+ .-+..+.++++.-.+...+.+.-..++..-++. .-..+. .+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344667777777777777777776421 11 123344555555555445544444444332221 000010 12
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCC--------CC-------eechhhhhHHhhhCCChhHHHHHHHHHHh
Q 001852 468 GNALVSMYAKSGMMSEAKQVFRIMPK--------RD-------TVTWNALIGGHSEKEEPDKALKAYKRMRE 524 (1004)
Q Consensus 468 ~~~Li~~y~~~g~~~~A~~~f~~m~~--------~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 524 (1004)
-+.|...|...|.+..-.+++.++.. .| ...|..=|..|....+-.+-..+|++...
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 23455566666666666666665531 01 23455556666666665555556655443
No 414
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=32.33 E-value=22 Score=27.60 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.2
Q ss_pred eEEEEeCCCccccccCcccC
Q 001852 980 RRIILRDPYRFHHFYGGECS 999 (1004)
Q Consensus 980 r~i~~rd~~r~h~f~~g~cs 999 (1004)
.-|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778999999999999854
No 415
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.26 E-value=74 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=15.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc
Q 001852 604 MIAANALHGQGEEVLKLLVKMRHT 627 (1004)
Q Consensus 604 li~~~~~~g~~~~A~~l~~~m~~~ 627 (1004)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666643
No 416
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.19 E-value=5e+02 Score=25.51 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhC--------------CCCChhHHhHHHhhHHhcCChhhHhhhcCC
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLG--------------FDLDPFVTNAAMDMYGKCGEIGDVLRIAPQ 693 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~~~~~~~~~g--------------~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 693 (1004)
.+++-.|.+.-++.+|+.+++.+-+.. ..+.-.+.|.-..++.++|++|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 355566777777788877777665432 223345566777788888888888887764
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.63 E-value=5.2e+02 Score=26.55 Aligned_cols=57 Identities=2% Similarity=-0.045 Sum_probs=32.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhh-hhhHHHHHHHHHHHH
Q 001852 604 MIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAK-LAVLEEGHQLHGLAT 660 (1004)
Q Consensus 604 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~ 660 (1004)
++..+-+.|+++++++.++++...+...+..--+.+-.+|-+ .|....+..++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455667778888888888888777666665555544445532 344455555554443
No 418
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.59 E-value=1.6e+03 Score=31.31 Aligned_cols=273 Identities=12% Similarity=0.053 Sum_probs=135.3
Q ss_pred HHhhHHHHcCChhhHHHHHhc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-hhhHHHHHHHHhhhhhH
Q 001852 572 SLITMYAKCGDLNSSNYIFEG-LAEKNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFD-RFSLSEGLAAAAKLAVL 649 (1004)
Q Consensus 572 ~Li~~y~k~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~ 649 (1004)
.+...|+.-+++|...-+... ...+ +...-|.-....|++..|...|+++.+. .|+ ..+++-++......+.+
T Consensus 1425 llq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l 1499 (2382)
T KOG0890|consen 1425 LLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHL 1499 (2382)
T ss_pred HHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccch
Confidence 344466666666655554442 2222 1223344556677788888888877764 444 45566566555555555
Q ss_pred HHHHHHHHHHHHhCCCCChhHHhH-HHhhHHhcCChhhHhhhcCCCCCCChhHHHHH-HH-HHHhc--CCHHHHHHHHHH
Q 001852 650 EEGHQLHGLATKLGFDLDPFVTNA-AMDMYGKCGEIGDVLRIAPQPVDRPRLSWNIL-IS-VFARH--GYFQKAIETFDE 724 (1004)
Q Consensus 650 ~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~--g~~~~A~~l~~~ 724 (1004)
+...-..+..... ..+...-++. =+.+--+.++++.-.+... ..+...|.+. +. ...+. .+.-.-.++.+.
T Consensus 1500 ~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~ 1575 (2382)
T KOG0890|consen 1500 STEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIEN 1575 (2382)
T ss_pred hHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHH
Confidence 5444332222111 1111111111 1222234455554444433 4555666655 22 11111 111112233333
Q ss_pred HhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHh----------HhhcCCCCCCchHH---HHHHHHHhcCChHHHHHH
Q 001852 725 MLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTM----------TTEFGVPAGIEHCV---CIIDLLGRSGRLAEAETF 791 (1004)
Q Consensus 725 m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m----------~~~~~~~p~~~~y~---~lv~~l~r~g~~~eA~~~ 791 (1004)
+.+. ...=+++|+..|-+..+.++.-+. ....+..|+...-. ....-+.+.+....+.+-
T Consensus 1576 ~r~~-------~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ep 1648 (2382)
T KOG0890|consen 1576 SREL-------VIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEP 1648 (2382)
T ss_pred HHHH-------hhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhH
Confidence 3332 111234455554433443332221 11123333321100 111222222322223333
Q ss_pred HHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHH
Q 001852 792 INKM-------PVTPN-----DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRR 859 (1004)
Q Consensus 792 i~~m-------~~~p~-----~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 859 (1004)
|-.+ ...|+ ..+|..+...+|..|.++.|..+.=++.+.. -+..++-.+...+..|+-..|..+.+
T Consensus 1649 ILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1649 ILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred HHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHH
Confidence 3221 12333 3489999999999999999999988888877 46788889999999999999988766
Q ss_pred HHh
Q 001852 860 QMG 862 (1004)
Q Consensus 860 ~m~ 862 (1004)
.--
T Consensus 1727 ~~l 1729 (2382)
T KOG0890|consen 1727 EIL 1729 (2382)
T ss_pred HHH
Confidence 544
No 419
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.47 E-value=3.7e+02 Score=32.81 Aligned_cols=133 Identities=18% Similarity=0.168 Sum_probs=90.4
Q ss_pred HhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHH
Q 001852 675 MDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQ 754 (1004)
Q Consensus 675 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~ 754 (1004)
.++...||+++.|.+.-.+.. |...|..|+..-...|+.+-|+..|++... |.-|-..|.-.|+.++-.+
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHH
Confidence 345678999999988766654 556899999999999999999999988764 3334444667788888777
Q ss_pred HHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 001852 755 YYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELD 831 (1004)
Q Consensus 755 ~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~ 831 (1004)
+.+..+.. -+. .+|. ..+| .|.++|-.++++....-|- .|.+ -..||.-+.|++..+++-..+
T Consensus 720 m~~iae~r----~D~~~~~q--nalY--l~dv~ervkIl~n~g~~~l--aylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATGQFQ--NALY--LGDVKERVKILENGGQLPL--AYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHhh----hhhHHHHH--HHHH--hccHHHHHHHHHhcCcccH--HHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 66555332 222 2221 1222 5788888888777654432 2321 246899999999999887743
No 420
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.18 E-value=1.5e+02 Score=25.12 Aligned_cols=61 Identities=20% Similarity=0.098 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CCCeehhhhHhhhcCCch-HHHHHHHHH
Q 001852 801 DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSD--DSSYVLYSNVCAATGRWD-DVENVRRQM 861 (1004)
Q Consensus 801 ~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~-~a~~~~~~m 861 (1004)
......|...+...|+.+.|...+-.+++.+|+. ...-..|-.++...|.-+ -+.+.|++|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3466677777888888888888888888877654 445666667777766643 445555554
No 421
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.52 E-value=1.2e+03 Score=29.53 Aligned_cols=265 Identities=8% Similarity=-0.079 Sum_probs=143.4
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcccCChhhhHHHHHHHHHhcCCC
Q 001852 182 RRVFEEMPVRNVVSWTSLMVAYLDNGSPIEVVDLYRYMRREGVCCNENTFAAVITSCGLTENDLLGYLFLGHVIKFGFHY 261 (1004)
Q Consensus 182 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 261 (1004)
..+...+..+|...--..+..+.+.+.. +++..+....+. ++...-...+.++...+........+...++ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 3444555567777777777777777654 355555555432 3333333444444433221111222323333 25
Q ss_pred ChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHHHhhcC
Q 001852 262 TVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLLSACGS 341 (1004)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 341 (1004)
|..+-...+..+...+.- ....+...+..+|...=...+.++.+.+..+. +.... -.++...=.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 666666666666544321 12345556666776655666666666554332 11222 23455555555666665
Q ss_pred CCChhh-HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHH-HHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHH
Q 001852 342 VDNLKW-GRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAK-FVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFS 419 (1004)
Q Consensus 342 ~~~~~~-a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 419 (1004)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. .++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 554332 2233333332 467888888888888888766543 34455555665555566677776665 45666666
Q ss_pred HhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001852 420 NMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNAL 471 (1004)
Q Consensus 420 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 471 (1004)
.+... |+...=...+.++.....-..+...+....+ .+|..+-...
T Consensus 845 ~~L~D---~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A 890 (897)
T PRK13800 845 EALTD---PHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYA 890 (897)
T ss_pred HHhcC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence 66643 5666666667777765434455555555554 3354444433
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.93 E-value=94 Score=24.07 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 001852 716 QKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 716 ~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
++..++.+.+.. .+-|-.--..++.++...|++++|.++.+.+.+
T Consensus 7 ~~~~~~~~~lR~-~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA-QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444433 233444455677777777777777777777654
No 423
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.61 E-value=69 Score=22.83 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=15.5
Q ss_pred hhHHhhhCCChhHHHHHHHHHHhcC
Q 001852 502 LIGGHSEKEEPDKALKAYKRMREEG 526 (1004)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~g 526 (1004)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3456666666666666666666543
No 424
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=29.13 E-value=29 Score=29.90 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=20.8
Q ss_pred eeccccccCC-cccceeeeeeeeeEEEEeCCCc
Q 001852 958 FKNLRVCSDC-HSVYKFISKIVRRRIILRDPYR 989 (1004)
Q Consensus 958 ~kn~r~c~dc-h~~~k~~s~~~~r~i~~rd~~r 989 (1004)
.-++-||.+| |+|.+--.....-..++||+|-
T Consensus 16 dg~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 16 DGTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred cCCeeECccccccccccccccccCCceEEcCCC
Confidence 3578899999 7777653222222257899874
No 425
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=28.26 E-value=17 Score=30.69 Aligned_cols=11 Identities=55% Similarity=1.250 Sum_probs=9.2
Q ss_pred ccCcccCCCCC
Q 001852 993 FYGGECSCLDY 1003 (1004)
Q Consensus 993 f~~g~csc~~~ 1003 (1004)
-+.|.|||.||
T Consensus 47 l~~gfCSCp~~ 57 (117)
T COG5431 47 LEGGFCSCPDF 57 (117)
T ss_pred EEcCcccCHHH
Confidence 46789999986
No 426
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=28.17 E-value=8.5e+02 Score=26.91 Aligned_cols=190 Identities=15% Similarity=0.163 Sum_probs=121.9
Q ss_pred CCChhHHhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHH-HHhcCCHHHHHHH-HHHHhhc--cCCCHhHHHHHH
Q 001852 665 DLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISV-FARHGYFQKAIET-FDEMLKY--VKPDHVTFVSLL 740 (1004)
Q Consensus 665 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~l-~~~m~~~--~~pd~~t~~~ll 740 (1004)
..+..+...+++++...++++.- |-.+.. -.++|+.+.|+.- .++.... -.||..|-..++
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~L---------------ne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLL---------------NEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHH---------------HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 34455556666677666666532 323333 3567888887753 3333332 456666666666
Q ss_pred HHHhc--cCC----HHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHH--HHH
Q 001852 741 SACNH--GGL----VDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPN------DLV--WRS 806 (1004)
Q Consensus 741 ~a~~~--~g~----~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~------~~~--~~~ 806 (1004)
..... .|. ++.|. + -..++..+.+.|++++|..++...|.+.- ..+ ..-
T Consensus 114 ~tLr~VtegkIyvEvERar--l---------------Tk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 114 ETLRTVTEGKIYVEVERAR--L---------------TKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILE 176 (439)
T ss_pred HHHHHhhcCceEEeehHHH--H---------------HHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 54421 222 11111 1 12366788899999999999988875421 111 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CCCeehhhhHhhhcCCchHHHHHHHHHhhCCCccCCcccEEEeCC
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSD-------DSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKKKPACSWVKSKD 879 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~ 879 (1004)
=+.-|...+|+-.|....+++...-=++ -.+|.++..++...+.+-++.+.++..-+.|..+...--|+++--
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 2456888899999999998887743222 236888888888999999999999999888877776667888877
Q ss_pred eEEEEec
Q 001852 880 GVNSFGM 886 (1004)
Q Consensus 880 ~~~~f~~ 886 (1004)
.+-.|..
T Consensus 257 ~iv~f~~ 263 (439)
T KOG1498|consen 257 SIVSFCV 263 (439)
T ss_pred hheeEEe
Confidence 7766764
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.98 E-value=1.2e+02 Score=22.08 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCcccHHHHHHh
Q 001852 100 GLVRLGLYQESVGFFNEMLSFGVRPTGVLISSLLSA 135 (1004)
Q Consensus 100 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a 135 (1004)
..-+.|...++..++++|.+.|+..+...|..+++-
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 344667777888888888888888777777766653
No 428
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.92 E-value=6.8e+02 Score=25.71 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=37.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHH
Q 001852 807 LLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENV 857 (1004)
Q Consensus 807 ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 857 (1004)
+..++.+.|++=++++-...++..+|.|..+|..-+...++.=+-.+|..=
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D 286 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD 286 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence 333445668888888888899999999999888888877765555555443
No 429
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=27.87 E-value=23 Score=26.41 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=8.3
Q ss_pred cccccCCccc
Q 001852 961 LRVCSDCHSV 970 (1004)
Q Consensus 961 ~r~c~dch~~ 970 (1004)
..||+|||.-
T Consensus 20 iYiCgdC~~e 29 (62)
T KOG3507|consen 20 IYICGDCGQE 29 (62)
T ss_pred EEEecccccc
Confidence 5799999964
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.76 E-value=1.2e+03 Score=28.71 Aligned_cols=248 Identities=16% Similarity=0.108 Sum_probs=125.3
Q ss_pred HHcCChhhHHHHHhcCC----CCC-------HhHHHHHHHHH-HhcCChHHHHHHHHHhhhc----CCCCChhhHHHHHH
Q 001852 578 AKCGDLNSSNYIFEGLA----EKN-------SVTWNAMIAAN-ALHGQGEEVLKLLVKMRHT----GVYFDRFSLSEGLA 641 (1004)
Q Consensus 578 ~k~g~~~~A~~~f~~~~----~~~-------~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~ll~ 641 (1004)
....++++|..+..+.. .++ ...|+++-... ...|++++|.++-+..... -..+..+.+..+-.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577777777776542 221 23566665433 3467888888887776543 12233344445555
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHH-----hhHHhcCChh--hHhhhcCCCC-----CCC-----hhHHHH
Q 001852 642 AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAM-----DMYGKCGEIG--DVLRIAPQPV-----DRP-----RLSWNI 704 (1004)
Q Consensus 642 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~y~k~g~~~--~A~~~~~~~~-----~~~-----~~~~~~ 704 (1004)
+..-.|.+++|..+.....+..-.-++..+..++ ..+...|... +....|.... .+. +.....
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 6666788888888877666543333444333322 2345566332 2223333221 111 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc---cCCCHh--HH--HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-CchHHHH-
Q 001852 705 LISVFARHGYFQKAIETFDEMLKY---VKPDHV--TF--VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG-IEHCVCI- 775 (1004)
Q Consensus 705 li~~~~~~g~~~~A~~l~~~m~~~---~~pd~~--t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l- 775 (1004)
+..++.+ .+.+..-...-.+. ..|... .. ..|.......|+.++|...++.+.... ..++ ...|.++
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~-~~~~~~~~~~a~~ 661 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL-LNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCCCchHHHHH
Confidence 4455544 33333322222221 233222 12 245667778899999999999887643 2232 1223332
Q ss_pred --HHH--HHhcCChHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001852 776 --IDL--LGRSGRLAEAETFINKM--PVTP----NDLVWRSLLASSKIHGNVELAKKAAEHLFE 829 (1004)
Q Consensus 776 --v~~--l~r~g~~~eA~~~i~~m--~~~p----~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~ 829 (1004)
|.+ -...|+.++|.....+. |..- -...|......-...|-...++.+...+.+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l~~ 725 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDELAS 725 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHHhh
Confidence 322 23678888888777653 1100 011233333333344555555555555544
No 431
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.39 E-value=3e+02 Score=23.06 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCChhhhhHHHHHhhCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchhHH
Q 001852 248 YLFLGHVIKFGFHYTVPVANSLISMFGNFGSVKEARCIFDSMHVRDTISWNSMISVYSHSGLCDQSL 314 (1004)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 314 (1004)
.++++.+++.|+-. ....+.+-.+-...|+.+.|+++++.++ +....|..+++++-..|.-.-|.
T Consensus 22 ~~v~d~ll~~~ilT-~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLLT-EEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34555555555321 1122222222235678888888888888 77778888888888777655443
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.36 E-value=62 Score=29.43 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=24.3
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 001852 609 ALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAA 643 (1004)
Q Consensus 609 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 643 (1004)
...|.-.+|-.+|++|+..|-+||. +..||.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4456677889999999999999984 45555443
No 433
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.26 E-value=6.7e+02 Score=25.43 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC---CHhHHH--HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCch-----
Q 001852 702 WNILISVFARHGYFQKAIETFDEMLKYVKP---DHVTFV--SLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEH----- 771 (1004)
Q Consensus 702 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~p---d~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----- 771 (1004)
.|.||--|..+..+.+|.+.|.+=.. ++| |..++. .-+......|++++|++..++.... -+.-+.+.
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~-i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq 106 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESG-IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQ 106 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccC-CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHH
Confidence 44555555555445555544443322 222 222222 2333445666666666666555322 11222111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh
Q 001852 772 CVCIIDLLGRSGRLAEAETFINK 794 (1004)
Q Consensus 772 y~~lv~~l~r~g~~~eA~~~i~~ 794 (1004)
+-.++. +.|.|+.++|.+|.+.
T Consensus 107 ~q~lIE-liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 107 QLHLIE-LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHH-HHHhhhHHHHHHHHHH
Confidence 112233 3478889999998865
No 434
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=26.95 E-value=99 Score=23.36 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccCC
Q 001852 896 HIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSP 950 (1004)
Q Consensus 896 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~ 950 (1004)
.+...+++|..++++.|-. -|+|+|+.-.-.+.+|
T Consensus 4 ~al~~lerlq~KL~~rGd~--------------------s~~e~L~~l~~~LqSP 38 (58)
T PF09045_consen 4 RALQALERLQAKLKERGDT--------------------SHSEKLSLLKDTLQSP 38 (58)
T ss_dssp HHHHHHHHHHHHHHHCT----------------------TTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHccCc--------------------ccHHHHHHHHHHHhCh
Confidence 3567889999999998853 4788888766665544
No 435
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.52 E-value=1.3e+02 Score=24.29 Aligned_cols=37 Identities=27% Similarity=0.541 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCC
Q 001852 879 DGVNSFGMGDHSHPDTEHIYAKLEELKKMIKEAGYVPDTS 918 (1004)
Q Consensus 879 ~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 918 (1004)
+..-.|-.+| +..++|.+.|.....-+++.||.|-..
T Consensus 5 D~T~~f~~~d---~~~~~v~e~L~~VY~sL~ekGYNpiNQ 41 (88)
T COG4472 5 DETMRFDVGD---SDKKDVKETLNDVYNSLEEKGYNPINQ 41 (88)
T ss_pred cceeeeecCC---ChHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3445677777 567889999999999999999998543
No 436
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=26.51 E-value=1.1e+02 Score=27.11 Aligned_cols=71 Identities=23% Similarity=0.401 Sum_probs=49.3
Q ss_pred cEEEeCCeEEEEecCCC-CCCChHHHHHHHHHHHHHHHHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccCCC
Q 001852 873 SWVKSKDGVNSFGMGDH-SHPDTEHIYAKLEELKKMIKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPE 951 (1004)
Q Consensus 873 s~i~~~~~~~~f~~~d~-~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~ 951 (1004)
+|++.+|.+..|...+. .+|...+|...|+++.+++... ..+..-|++++ ..||-.|++-+.|
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-----v~f~kVdid~~----------~~la~~f~V~sIP- 85 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-----FRAAVVGRADE----------QALAARFGVLRTP- 85 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-----EEEEEEECCCC----------HHHHHHcCCCcCC-
Confidence 45667777777777774 8999999999999998766322 22233344442 3678889988877
Q ss_pred CCcEEEeecc
Q 001852 952 GSTIRIFKNL 961 (1004)
Q Consensus 952 ~~~~~~~kn~ 961 (1004)
++.++||=
T Consensus 86 --Tli~fkdG 93 (111)
T cd02965 86 --ALLFFRDG 93 (111)
T ss_pred --EEEEEECC
Confidence 66777753
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.35 E-value=1.9e+02 Score=20.98 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=22.9
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 001852 203 YLDNGSPIEVVDLYRYMRREGVCCNENTFAAVIT 236 (1004)
Q Consensus 203 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 236 (1004)
..+.|...++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777766666666554
No 438
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.34 E-value=2e+02 Score=28.19 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=9.4
Q ss_pred hcCChHHHHHHHHhC
Q 001852 781 RSGRLAEAETFINKM 795 (1004)
Q Consensus 781 r~g~~~eA~~~i~~m 795 (1004)
+.|++++|.++++-|
T Consensus 133 ~~~~~~~Ae~~~~~M 147 (204)
T COG2178 133 RKGSFEEAERFLKFM 147 (204)
T ss_pred HhccHHHHHHHHHHH
Confidence 456666666666555
No 439
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=26.25 E-value=1.5e+02 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 001852 787 EAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDP 832 (1004)
Q Consensus 787 eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p 832 (1004)
.+++-+-.+-+.|++.+..+-|.||+.-+|+..|.+++|-+-..-+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 3444444567889999999999999999999999999998766443
No 440
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=26.18 E-value=14 Score=35.75 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=9.9
Q ss_pred eccccccCCccc
Q 001852 959 KNLRVCSDCHSV 970 (1004)
Q Consensus 959 kn~r~c~dch~~ 970 (1004)
.|+..|.-||.-
T Consensus 179 dnlk~Cn~Ch~L 190 (235)
T KOG4718|consen 179 DNLKNCNLCHCL 190 (235)
T ss_pred HHHHHHhHhHHH
Confidence 489999999864
No 441
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=25.20 E-value=1e+03 Score=26.79 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=49.3
Q ss_pred hHHhhHHHHcCChhhHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 001852 571 NSLITMYAKCGDLNSSNYIFEGLAEK---NSVTWNAMIAANALHGQGEEVLKLLVKMRHTGV 629 (1004)
Q Consensus 571 ~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 629 (1004)
..|+.-|...|.+.+|.....++.-| ..+.+.+++.+..+.|+-+.-+.++++....|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 46788899999999999999988776 567889999999999988888888887766653
No 442
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=25.15 E-value=1.2e+02 Score=28.18 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHH
Q 001852 786 AEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDV 854 (1004)
Q Consensus 786 ~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 854 (1004)
++|.++++-|.- ..............|++..|..+.+.++..+|+|.....+.+++|.+.|.-.+.
T Consensus 58 ~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 58 EEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 456666666531 222223334456789999999999999999999999988988888777654443
No 443
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.12 E-value=4.7e+02 Score=22.97 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 001852 344 NLKWGRGIHGLAVKLALNSNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQ 423 (1004)
Q Consensus 344 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (1004)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||..+|-++-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45566666666655543 223333334455667899999966666667789999987754 467888888887777765
Q ss_pred cC
Q 001852 424 KQ 425 (1004)
Q Consensus 424 ~g 425 (1004)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 444
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.99 E-value=2.4e+02 Score=23.85 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=28.2
Q ss_pred HhcCCHHHHHHHHHHHhhc----cCCC-----HhHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 001852 710 ARHGYFQKAIETFDEMLKY----VKPD-----HVTFVSLLSACNHGGLVDKGLQYYNTMTT 761 (1004)
Q Consensus 710 ~~~g~~~~A~~l~~~m~~~----~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 761 (1004)
.+.|++.+|++.+.+..+. ..+. ......+.......|..++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567777776666655543 1222 12223344445556677777666666543
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=24.97 E-value=2.9e+02 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=25.2
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 001852 396 VSWNSLVASHVQDEKYIDALKIFSNMLQ 423 (1004)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (1004)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4689999999999999999999999877
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.86 E-value=1.1e+02 Score=32.36 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 001852 297 WNSMISVYSHSGLCDQSLKCFHWMRHVGQEINSTTFSTLL 336 (1004)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 336 (1004)
||.-|....+.|++++|+.++++.++.|+.--..||...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 6888999999999999999999999988775555554443
No 447
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.81 E-value=5.7e+02 Score=26.10 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=67.7
Q ss_pred HhHHHhhHHhcCChhhHhhhcCCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCHh--HHHHHHHHHhcc
Q 001852 671 TNAAMDMYGKCGEIGDVLRIAPQPVDRPRLSWNILISVFARHGYFQKAIETFDEMLKY--VKPDHV--TFVSLLSACNHG 746 (1004)
Q Consensus 671 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~pd~~--t~~~ll~a~~~~ 746 (1004)
|.-.|+.|...|.- ..|.+.++.||- ....|+++.|+++.+-+++. .-|+.. ++-.++
T Consensus 67 Y~p~V~g~L~~g~~-----------~qd~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v------ 128 (230)
T PHA02537 67 YLPWVEGVLAAGAG-----------YQDDVLMTVMVW-RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV------ 128 (230)
T ss_pred hHHHHHHHHHcCCC-----------CCCCeeeEeeee-eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH------
Confidence 55566666655442 123332222332 34779999999999999987 556542 222222
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCCH
Q 001852 747 GLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSK---------IHGNV 817 (1004)
Q Consensus 747 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~---------~~g~~ 817 (1004)
.|+-...-....+. |-+.++.....+.++-.. ..||-+...-.+..++..+. ..++.
T Consensus 129 --aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~-----------~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l 194 (230)
T PHA02537 129 --AEEVANAALKAASA-GESVEPYFLRVFLDLTTE-----------WDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETL 194 (230)
T ss_pred --HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhc-----------CCCChHHHHHHHHHHHHHHhhcccCCCccCcccH
Confidence 12222222222221 333333322222221111 12333333335555555552 34578
Q ss_pred HHHHHHHHHHHhcCCC
Q 001852 818 ELAKKAAEHLFELDPS 833 (1004)
Q Consensus 818 e~a~~~~~~~~~l~p~ 833 (1004)
+.|...++++++++|+
T Consensus 195 ~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 195 QLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8999999999999986
No 448
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.66 E-value=1.4e+03 Score=28.27 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=77.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCCCCCeechhhhhHHhhhCCChhHHHHHHHHHHhcCCCCChh-hHHHHHHhhcCCc
Q 001852 467 VGNALVSMYAKSGMMSEAKQVFRIMPKRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYI-TFANVLGACLNPG 545 (1004)
Q Consensus 467 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~ 545 (1004)
...+........|+.+....+-.-|. -|..++.-+.+.+++++|++++..-.. |... -|...+-
T Consensus 506 nretv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~~~----~el~yk~ap~Li------ 570 (911)
T KOG2034|consen 506 NRETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQRN----PELFYKYAPELI------ 570 (911)
T ss_pred hHHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccc----hhhHHHhhhHHH------
Confidence 34444455556677776665544433 356677788888888888888765321 1111 1111110
Q ss_pred chhhcccchhhhhhhhcccCchhHHhHHhhHHHHcCCh---hhHHHH----HhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 001852 546 DLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDL---NSSNYI----FEGLAEKNSVTWNAMIAANALHGQGEEVL 618 (1004)
Q Consensus 546 ~~~~~~~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~---~~A~~~----f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 618 (1004)
.....+......+.+-..+.....+++..+.+.+.. ..+... .......|...+|.++..|++..+-+.-.
T Consensus 571 --~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~ 648 (911)
T KOG2034|consen 571 --THSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLL 648 (911)
T ss_pred --hcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHH
Confidence 001122222222333223333334444444444321 122221 22334457788888888888776555444
Q ss_pred HHHHHhhhcCCCCChhhHHHHHHHHhhhhh
Q 001852 619 KLLVKMRHTGVYFDRFSLSEGLAAAAKLAV 648 (1004)
Q Consensus 619 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 648 (1004)
.+-..+...+- ..+-....+..|.+.+.
T Consensus 649 ~le~~~~~~~~--~~YDl~~alRlc~~~~~ 676 (911)
T KOG2034|consen 649 YLEIIKFMKSR--VHYDLDYALRLCLKFKK 676 (911)
T ss_pred HHHHHhhcccc--ceecHHHHHHHHHHhCc
Confidence 33332222211 22334445555655443
No 449
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=24.50 E-value=56 Score=29.87 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=25.7
Q ss_pred HHHcCccCCCCccccCCchHhhhhhhhhhHHHHHHHHhhccCCCCCcEEEeeccccccCCccc
Q 001852 908 IKEAGYVPDTSFALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSTIRIFKNLRVCSDCHSV 970 (1004)
Q Consensus 908 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~ 970 (1004)
..+..|+.......|.++. -+|.||...|--||+.
T Consensus 61 r~e~nYvnQPP~IPHsi~~----------------------------Yqvtkn~N~CLsCH~~ 95 (155)
T COG3043 61 RMELNYVNQPPMIPHSIEG----------------------------YQVTKNTNRCLSCHSV 95 (155)
T ss_pred hhhhccCCCCCCCcccccC----------------------------ceeecccchhhhccCH
Confidence 3445677666667777654 4789999999999975
No 450
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.11 E-value=3.5e+02 Score=24.93 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCHhHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCCC--CchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 001852 731 PDHVTFVSLLSACNHGG---LVDKGLQYYNTMTTEFGVPAG--IEHCVCIIDLLGRSGRLAEAETFINKM-PVTPN 800 (1004)
Q Consensus 731 pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~i~~m-~~~p~ 800 (1004)
|...+-..+..+..++. ++.+|+.+++...+ .-.|. .+..--+.-.+.|.|+++++.++++.. ..+||
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 33334444555555543 34556666666653 11221 122222334455666666666666554 34444
No 451
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.00 E-value=81 Score=24.42 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=20.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 001852 597 NSVTWNAMIAANALHGQGEEVLKLLVKMRH 626 (1004)
Q Consensus 597 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 626 (1004)
|-.-.-..|.||.+.|++++|.+..+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444567888888888888888877654
No 452
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=23.58 E-value=1.1e+03 Score=27.51 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCc
Q 001852 772 CVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRW 851 (1004)
Q Consensus 772 y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 851 (1004)
-.|+-|-+..+.++.-|.++-++-.+. ...+|.+-.-+|.+.+|+..|+.-+++++++.-+|..--+.=.+-...-|--
T Consensus 559 secLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp 637 (1141)
T KOG1811|consen 559 SECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPP 637 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCc
Confidence 346666666677777777777665432 2347888888999999999999999999999866655333222223344545
Q ss_pred hHHHHHHHHHhhCCCccCC
Q 001852 852 DDVENVRRQMGWNKIKKKP 870 (1004)
Q Consensus 852 ~~a~~~~~~m~~~~~~k~~ 870 (1004)
.++..||+. -+.-.|..|
T Consensus 638 ~dVq~Vrem-~dhlak~ap 655 (1141)
T KOG1811|consen 638 RDVQDVREM-LDHLAKPAP 655 (1141)
T ss_pred chHHHHHHH-HHHhccCCc
Confidence 566666654 444445444
No 453
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.52 E-value=2.4e+02 Score=30.19 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=66.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhh
Q 001852 770 EHCVCIIDLLGRSGRLAEAETFINKM-P---VTPN--DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 770 ~~y~~lv~~l~r~g~~~eA~~~i~~m-~---~~p~--~~~~~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~ 843 (1004)
++|--=++-|.+..++..|...+.+- . -.|| .+.|.+-.++-.-.||+..++.-..+++.++|.+...|+-=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 44444556677888999999988765 1 2344 3456666555566699999999999999999999999998888
Q ss_pred HhhhcCCchHHHHH
Q 001852 844 VCAATGRWDDVENV 857 (1004)
Q Consensus 844 ~y~~~g~~~~a~~~ 857 (1004)
.+.+..++.+|...
T Consensus 162 c~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 162 CLLELERFAEAVNW 175 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888886666543
No 454
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=23.23 E-value=3.9e+02 Score=22.43 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=26.5
Q ss_pred hcCChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHH
Q 001852 376 EAGRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDA 414 (1004)
Q Consensus 376 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 414 (1004)
..|+.+.|+++++.++ +....|...+.++-..|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 7777777777777766654444
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.20 E-value=2.5e+02 Score=24.66 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=11.0
Q ss_pred HHhhHHHHcCChhhHHHHHhcCC
Q 001852 572 SLITMYAKCGDLNSSNYIFEGLA 594 (1004)
Q Consensus 572 ~Li~~y~k~g~~~~A~~~f~~~~ 594 (1004)
.++.-|...|+.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34444455555555555555543
No 456
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.67 E-value=2.7e+02 Score=30.75 Aligned_cols=118 Identities=11% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcC---CCCCCchHHHHHHHHH--hcCChHHHHHHHHhCCCCCCHHHHHHHHHH--
Q 001852 738 SLLSACNHGGLVDKGLQYYNTMTTEFG---VPAGIEHCVCIIDLLG--RSGRLAEAETFINKMPVTPNDLVWRSLLAS-- 810 (1004)
Q Consensus 738 ~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~y~~lv~~l~--r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~-- 810 (1004)
.......+.+++..|..+|+++.+... ......+|..+..+|. ..-++++|.+.++++...-+...|.++...
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred -HHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhh------hcCCchHHH
Q 001852 811 -SKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA------ATGRWDDVE 855 (1004)
Q Consensus 811 -~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~------~~g~~~~a~ 855 (1004)
..+....-++.....++....-..-..+.++.++|. ..|++++|.
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~ 266 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAA 266 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHH
No 457
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=22.67 E-value=1e+02 Score=28.06 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.0
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCcccHHHHHHhh
Q 001852 103 RLGLYQESVGFFNEMLSFGVRPTGVLISSLLSAC 136 (1004)
Q Consensus 103 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~a~ 136 (1004)
..|.-.+|-.+|.+|.++|-.||. |+.||.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667888999999999999985 66777654
No 458
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=22.66 E-value=40 Score=22.02 Aligned_cols=10 Identities=70% Similarity=0.976 Sum_probs=8.4
Q ss_pred HHHHHHhhcc
Q 001852 939 RLALAFGLIN 948 (1004)
Q Consensus 939 ~la~~~~~~~ 948 (1004)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 5899999986
No 459
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=3.1e+02 Score=28.55 Aligned_cols=56 Identities=25% Similarity=0.183 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHHHHHH
Q 001852 805 RSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQ 860 (1004)
Q Consensus 805 ~~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 860 (1004)
.++=+++...++.+.|..+.++++.++|+++.-..--+-+|+..|-..-|.+-..-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 34444567778999999999999999999998888889999999998888765544
No 460
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=22.35 E-value=8.8e+02 Score=30.52 Aligned_cols=119 Identities=11% Similarity=0.029 Sum_probs=66.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 001852 737 VSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKMPVTP-NDLVWRSLLASSKIH 814 (1004)
Q Consensus 737 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p-~~~~~~~ll~~~~~~ 814 (1004)
.+-|.++.+.+. .+....++...+.+.-.|-+ +-|-.+.-.-.+.+-++...++...-.+.+ ++.-.++|+++....
T Consensus 708 ~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~ 786 (863)
T TIGR02414 708 LAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANN 786 (863)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhc
Confidence 344555554433 23334444444445555543 444444333223334444444433332322 233567888887533
Q ss_pred CC-------HHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH
Q 001852 815 GN-------VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 815 g~-------~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
+. -+-=.-+++.+++++|-||..-.-|...+..=.++++..+
T Consensus 787 n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~ 835 (863)
T TIGR02414 787 NLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQ 835 (863)
T ss_pred CcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHH
Confidence 22 2233567899999999999987778888877777776654
No 461
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.25 E-value=1.4e+02 Score=31.50 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHH
Q 001852 397 SWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSAL 437 (1004)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 437 (1004)
-||..|..-++.|++++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788888889999999999999988888765555554433
No 462
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.22 E-value=1.2e+03 Score=26.66 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=6.8
Q ss_pred HHHHHHHcCCCCCh
Q 001852 215 LYRYMRREGVCCNE 228 (1004)
Q Consensus 215 l~~~m~~~g~~p~~ 228 (1004)
+++.+.+.|..|+.
T Consensus 50 ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 50 VVKILLDNGADINS 63 (480)
T ss_pred HHHHHHHcCCCCCC
Confidence 34444455655543
No 463
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=22.21 E-value=1.4e+03 Score=27.42 Aligned_cols=209 Identities=15% Similarity=0.125 Sum_probs=83.2
Q ss_pred HHHHHhhCCCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCCc-------hhHHHHHHHHHHcCCCCChh--hHHHH
Q 001852 268 SLISMFGNFGSVKEARCIFDSMH---VRDTISWNSMISVYSHSGLC-------DQSLKCFHWMRHVGQEINST--TFSTL 335 (1004)
Q Consensus 268 ~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g~~p~~~--t~~~l 335 (1004)
++|--+.++|++++|.++..+.. .+....+-..+..|+.+.+. +....-|++..+.....|++ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 45667788999999999883332 23445566777777765332 24444555555544433543 33334
Q ss_pred HHhhcCCC-Ch-hhHH------HHHHHHHHhcCC-----CchHHHHHHHHHHHhcCChhhHHHHHhcCCCCCcchHHHHH
Q 001852 336 LSACGSVD-NL-KWGR------GIHGLAVKLALN-----SNVWVCNTLLAMYSEAGRSEDAKFVFQEMSERDSVSWNSLV 402 (1004)
Q Consensus 336 l~a~~~~~-~~-~~a~------~~~~~~~~~g~~-----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 402 (1004)
|..|--.. +. +.+. .+.=.+++.... .+..++..|=+...+-| ...|.. ..+...| .
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~Y---f 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLLY---F 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------H---H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHHH---H
Confidence 44343211 12 1111 111112222111 11223332222221111 122322 1222333 2
Q ss_pred HHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcc---
Q 001852 403 ASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMG-LHDNLIVGNALVSMYAKS--- 478 (1004)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~~--- 478 (1004)
..+.-.|+++.|++.+-+ ..+...|.+.+...|.-+.-..-..... ..+.... -.|...-+..||..|++.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345567899999998877 3445667777777777654433222211 1111110 011113456666666653
Q ss_pred CChHHHHHHHhcC
Q 001852 479 GMMSEAKQVFRIM 491 (1004)
Q Consensus 479 g~~~~A~~~f~~m 491 (1004)
.+..+|.+.|--+
T Consensus 341 td~~~Al~Y~~li 353 (613)
T PF04097_consen 341 TDPREALQYLYLI 353 (613)
T ss_dssp T-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH
Confidence 4555565555443
No 464
>PF14376 Haem_bd: Haem-binding domain
Probab=22.14 E-value=33 Score=31.73 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=7.9
Q ss_pred cccccCCccc
Q 001852 961 LRVCSDCHSV 970 (1004)
Q Consensus 961 ~r~c~dch~~ 970 (1004)
-+-|.|||+-
T Consensus 41 ~~~CydCHSn 50 (137)
T PF14376_consen 41 KNSCYDCHSN 50 (137)
T ss_pred HccccccCCC
Confidence 3579999974
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.10 E-value=4.8e+02 Score=25.49 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 001852 806 SLLASSKIHGNVELAKKAAEHLFELDPSDDSS 837 (1004)
Q Consensus 806 ~ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~ 837 (1004)
.....|...|.+++|+++++++++ +|++...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 345679999999999999999999 7776443
No 466
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=21.36 E-value=6.3e+02 Score=23.00 Aligned_cols=114 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred CChhhHHHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHh----------hHHHHHHhhcCCCChH
Q 001852 378 GRSEDAKFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYV----------TFTSALAACSDPGFVV 447 (1004)
Q Consensus 378 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~ 447 (1004)
.++.-|..++......+ -....++.+.+..-.-.++++..++....-.|..+ +...+-........+.
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhh
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHccCChHHHHHHHhcCCC
Q 001852 448 QGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRIMPK 493 (1004)
Q Consensus 448 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 493 (1004)
..-.+...+++.++......+..+=..+.+..++.+|..+|+-+.+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk~ 126 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLKN 126 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHhC
No 467
>PRK14015 pepN aminopeptidase N; Provisional
Probab=21.18 E-value=9.5e+02 Score=30.30 Aligned_cols=120 Identities=12% Similarity=0.057 Sum_probs=67.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCC-chHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 001852 736 FVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGI-EHCVCIIDLLGRSGRLAEAETFINKMPVTP-NDLVWRSLLASSKI 813 (1004)
Q Consensus 736 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p-~~~~~~~ll~~~~~ 813 (1004)
-.+-|.++.+.+. .+....++...+.+.-.|-+ +-|-.+.-.-.+.+-++...++.+.-.+.+ ++.-.++|+++...
T Consensus 717 ~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~ 795 (875)
T PRK14015 717 RLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAA 795 (875)
T ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhh
Confidence 3345555555443 23333444444445555543 445444433333343444444443332332 23456788888754
Q ss_pred cCC-------HHHHHHHHHHHHhcCCCCCCCeehhhhHhhhcCCchHHHH
Q 001852 814 HGN-------VELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVEN 856 (1004)
Q Consensus 814 ~g~-------~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 856 (1004)
.+- -+-=.-+++.++++++.||..-.-|...+..=.++++..+
T Consensus 796 ~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~ 845 (875)
T PRK14015 796 ANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQ 845 (875)
T ss_pred cCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHH
Confidence 332 2233567889999999999987778888877777776654
No 468
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=21.06 E-value=3.1e+02 Score=28.78 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 001852 704 ILISVFARHGYFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 704 ~li~~~~~~g~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
.....|...|.+.+|.++-++.+. +.| +...+-.+...+...|+--.+...++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~lt-ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALT-LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344566777777777777777766 344 66666666667777777666666665554
No 469
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.86 E-value=8.1e+02 Score=24.13 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=53.8
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHcCCCHHHHHHHHHHhhhcCCcCCHhhHHHHHHhhcCCCChHHHHHHHHHHHHhCC--
Q 001852 384 KFVFQEMSERDSVSWNSLVASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGL-- 461 (1004)
Q Consensus 384 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-- 461 (1004)
..+..+-.++-.+.|.....+-++.-+.+++-+.|-- .+=.+++-.|-+..++.+++.+++.+.+..+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444445556666666666655444443332211 1123445556666677788887777765422
Q ss_pred ------------CCchHHHHHHHHHHHccCChHHHHHHHhc
Q 001852 462 ------------HDNLIVGNALVSMYAKSGMMSEAKQVFRI 490 (1004)
Q Consensus 462 ------------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 490 (1004)
.+.-.+.|.....+.++|.+|.|..++++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22334556666667777777777777664
No 470
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=9.9e+02 Score=25.11 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCChhhHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHHhhHHhcCC
Q 001852 604 MIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGE 683 (1004)
Q Consensus 604 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 683 (1004)
+..-..+.++.++|+..+.+....|+..|..+. .-...+..-|.+.|...|+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----------------------------nEqE~tvlel~~lyv~~g~ 60 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----------------------------NEQEATVLELFKLYVSKGD 60 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----------------------------hHHHHHHHHHHHHHHhcCC
Q ss_pred hhhHhhhcCCCCC--------CChhHHHHHHHHH-HhcCCHHHHHHHHHHHhhc-cCCCHhHHH-----HHHHHHhccCC
Q 001852 684 IGDVLRIAPQPVD--------RPRLSWNILISVF-ARHGYFQKAIETFDEMLKY-VKPDHVTFV-----SLLSACNHGGL 748 (1004)
Q Consensus 684 ~~~A~~~~~~~~~--------~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~-~~pd~~t~~-----~ll~a~~~~g~ 748 (1004)
..+-.+......+ +..-...++|.-+ ......+.-+++.....+- .+.+..-.. -++.++...|.
T Consensus 61 ~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~ 140 (421)
T COG5159 61 YCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK 140 (421)
T ss_pred cchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHhHhhcCCCCC-----------CchHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcC
Q 001852 749 VDKGLQYYNTMTTEFGVPAG-----------IEHCVCIIDLLGRSGRLAEAETFINKMPVTPNDLVWRSLLAS--SKIHG 815 (1004)
Q Consensus 749 ~~~a~~~~~~m~~~~~~~p~-----------~~~y~~lv~~l~r~g~~~eA~~~i~~m~~~p~~~~~~~ll~~--~~~~g 815 (1004)
+.+|+.+.+....++.---+ ...|-.+-++--....+..|....+..=.+|....---|+++ .+...
T Consensus 141 YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 141 YSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccc
Q ss_pred CHHHHHHHHHHHHh---cCCCCCCCeehhhhHhhhcCCchHHHHHHHHHhhCCCcc
Q 001852 816 NVELAKKAAEHLFE---LDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWNKIKK 868 (1004)
Q Consensus 816 ~~e~a~~~~~~~~~---l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k 868 (1004)
|+..|-..+-.++| +-..+..+.+.|-.+..+.=..+...++...|+.+...+
T Consensus 221 dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~ 276 (421)
T COG5159 221 DYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLK 276 (421)
T ss_pred cchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHh
No 471
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.65 E-value=1e+02 Score=32.96 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=32.2
Q ss_pred CChhhHhhhcCCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCHh-HHHHHHHHHhccCCHHHHHHHHH
Q 001852 682 GEIGDVLRIAPQPVDRPR---LSWNILISVFARHGYFQKAIETFDEMLKYVKPDHV-TFVSLLSACNHGGLVDKGLQYYN 757 (1004)
Q Consensus 682 g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 757 (1004)
|.++.|++.|....+.++ ..|.--.+++.+.++...|++-++...+ +.||.. -|-.-..|-...|.+++|.+.|.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e-in~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE-INPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc-cCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 445555555554443222 2222233444444444445544444444 344321 22222223333444444444444
Q ss_pred HhH
Q 001852 758 TMT 760 (1004)
Q Consensus 758 ~m~ 760 (1004)
...
T Consensus 207 ~a~ 209 (377)
T KOG1308|consen 207 LAC 209 (377)
T ss_pred HHH
Confidence 443
No 472
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=1e+03 Score=29.67 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhc-cCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCCchHHHHHHHHHhcCChHHHH
Q 001852 716 QKAIETFDEMLKY-VKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAE 789 (1004)
Q Consensus 716 ~~A~~l~~~m~~~-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 789 (1004)
++-.+.|.+..+= -.-|.-++..-..-....|++-.|.+++.++.++.+-.++.++|..+++++...|.-..|-
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~t 1287 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLAT 1287 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhHH
Confidence 3344555555543 2234444444444455668888999999999888888889999998888888888764443
No 473
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=20.19 E-value=48 Score=36.06 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=21.2
Q ss_pred hhhhhhhHHHHHHHHhhccC-CCCCcEEEe
Q 001852 930 EHNLWNHSERLALAFGLINS-PEGSTIRIF 958 (1004)
Q Consensus 930 ~~~~~~hse~la~~~~~~~~-~~~~~~~~~ 958 (1004)
+.....+.=|+|+|+++|.+ |||...|..
T Consensus 13 ~~~wyl~tsKlAlAlAIIrsKPpg~s~Rey 42 (375)
T PF13971_consen 13 QLSWYLKTSKLALALAIIRSKPPGKSSREY 42 (375)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 33445567799999999986 788766644
No 474
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=20.12 E-value=1e+03 Score=25.05 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=12.3
Q ss_pred HHHHHhcCCCCCCCeehhhh
Q 001852 824 AEHLFELDPSDDSSYVLYSN 843 (1004)
Q Consensus 824 ~~~~~~l~p~~~~~~~~l~~ 843 (1004)
+=-++.+||..|+.+--+..
T Consensus 267 yLLv~R~DPA~Pss~p~i~k 286 (309)
T PF07163_consen 267 YLLVVRLDPASPSSLPWIYK 286 (309)
T ss_pred HHHheeecCCCCCcchHHHH
Confidence 34455678887776554444
Done!