Query 001852
Match_columns 1004
No_of_seqs 830 out of 5723
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 15:57:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001852.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1150-1153//hhsearch_pdb/001852hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 343.8 33.9 308 466-846 273-595 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 342.2 35.9 297 564-864 269-579 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 213.6 19.1 73 403-475 148-220 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 212.4 18.6 128 411-538 86-217 (501)
5 2y4t_A DNAJ homolog subfamily 1.0 1 1 199.2 24.5 223 646-870 156-412 (450)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 198.3 33.2 368 404-850 8-388 (388)
7 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 193.4 31.3 291 567-863 67-367 (388)
8 2gw1_A Mitochondrial precursor 1.0 1 1 186.5 26.5 194 668-863 270-477 (514)
9 2gw1_A Mitochondrial precursor 1.0 1 1 180.6 29.0 237 569-841 239-489 (514)
10 3fp2_A TPR repeat-containing p 1.0 1 1 172.3 31.1 231 604-837 249-498 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=343.79 Aligned_cols=308 Identities=10% Similarity=-0.011 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCC--CCEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 7999999977705993889999851999--98000243147764079903899999998761999982159989985138
Q 001852 466 IVGNALVSMYAKSGMMSEAKQVFRIMPK--RDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLN 543 (1004)
Q Consensus 466 ~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 543 (1004)
.+++.++..|.+.|++++|.++|+.+.+ ++..+|+.++.+|.+.|++++|+.+|++|...+ |
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-------------- 336 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--P-------------- 336 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--C--------------
T ss_conf 999999999807313999999998764388309999999999998468999999999999729--5--------------
Q ss_pred CCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 8300100211345666543567413785995699981992669999840899---8776999999999826992799999
Q 001852 544 PGDLLIHGMPIHTHIVLTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKL 620 (1004)
Q Consensus 544 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 620 (1004)
.+..+++.++..|.+.|++++|..+|+.+.+ .+..+|+.++..|.+.|++++|.++
T Consensus 337 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 337 ---------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp ---------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf ---------------------53799999999999827777999999999851835479999999999983569999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCC---CC
Q ss_conf 999622497779301999999996143199999999999983999981378499846985199344855428788---89
Q 001852 621 LVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DR 697 (1004)
Q Consensus 621 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~---~~ 697 (1004)
|+++... .| .+...++.++.+|.+.|++++|.+.|+++. ..
T Consensus 396 ~~~~~~~--~~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 396 FSKSSTM--DP----------------------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHH--CT----------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHH--CC----------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999872--97----------------------------------77899999999999757779999999999986813
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCCC--CCHH
Q ss_conf 922899999999813998999999999866359997589999999824698899999999957514---99999--7248
Q 001852 698 PRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEF---GVPAG--IEHC 772 (1004)
Q Consensus 698 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~y 772 (1004)
+..+|+.++.+|...|+.++|++.|+++.+..+.+..++..++..+.+.|++++|..+|++|.+.. +..|+ ...|
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 43899999999998579999999999999848887679999999999818999999999999985323454535499999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHH
Q ss_conf 99999887229928999998819-9999-99989999999996199999999999998229999877121533733
Q 001852 773 VCIIDLLGRSGRLAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCA 846 (1004)
Q Consensus 773 ~~lv~~l~r~g~~~eA~~~i~~m-~~~p-~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 846 (1004)
..+++++.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...++++++++|+++..+..|+++|.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999999980479999999999997389973899999999998178999999999997208887489999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=342.20 Aligned_cols=297 Identities=10% Similarity=-0.015 Sum_probs=263.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 67413785995699981992669999840899--8776999999999826992799999999622497779301999999
Q 001852 564 ESHKYVQNSLITMYAKCGDLNSSNYIFEGLAE--KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLA 641 (1004)
Q Consensus 564 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 641 (1004)
.....+++.++.+|.++|++++|..+|+++.+ ++..+|+.++.+|.+.|++++|+.+|++|...+ +.+..++..+..
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 347 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLA 347 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHH
T ss_conf 8999999999999807313999999998764388309999999999998468999999999999729-553799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9961431999999999999839999813784998469851993448554287888---9922899999999813998999
Q 001852 642 AAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKA 718 (1004)
Q Consensus 642 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 718 (1004)
.+...|+.+++..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 9998277779999999998518-354799999999999835699999999999872977789999999999975777999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC---
Q ss_conf 99999986635999758999999982469889999999995751499999724899999887229928999998819---
Q 001852 719 IETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM--- 795 (1004)
Q Consensus 719 ~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m--- 795 (1004)
+++|++|.+..+++..++..++.+|.+.|++++|..+|++|.+.. +.+...|.+++++|.+.|++++|.++++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999998681343899999999998579999999999999848--887679999999999818999999999999985
Q ss_pred ----CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf ----99999--9989999999996199999999999998229999877121533733219950899999998328
Q 001852 796 ----PVTPN--DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGWN 864 (1004)
Q Consensus 796 ----~~~p~--~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 864 (1004)
+..|+ ..+|..++.+|..+|+.+.|...++++++++|+++..|..++++|...|+|++|.+..+.+.+.
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 323454535499999999999998047999999999999738997389999999999817899999999999720
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=213.60 Aligned_cols=73 Identities=5% Similarity=-0.053 Sum_probs=24.7
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9997089979999999996552976777459999886169987388999999999957998367999999977
Q 001852 403 ASHVQDEKYIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMY 475 (1004)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 475 (1004)
.+|++.|+.++|.++|++|...|+.||..||+.+|.+|++.|+++.|.+++..|.+.|..|+..+++.++..|
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999888999999999999862999999999999999853898999999999999948996999999999998
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=212.35 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 79999999996552976777459999886169987388999999999957998367999999977705993889999851
Q 001852 411 YIDALKIFSNMLQKQRLVNYVTFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMSEAKQVFRI 490 (1004)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 490 (1004)
.+.|.++|++|...|+.||..||+.++.+|++.|+++.|..++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999980899989999999999984697788999999999728988611104899999988899999999999
Q ss_pred CC----CCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99----9980002431477640799038999999987619999821599899
Q 001852 491 MP----KRDTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVL 538 (1004)
Q Consensus 491 m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 538 (1004)
|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9862999999999999999853898999999999999948996999999999
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=199.17 Aligned_cols=223 Identities=12% Similarity=0.082 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 431999999999999839999813784998469851993448554287888---99228999999998139989999999
Q 001852 646 LAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETF 722 (1004)
Q Consensus 646 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 722 (1004)
.|++++|...+..+.+.. +.+...+..++.+|.++|++++|.+.|+++.. .+..+|..++..|...|+.++|+..|
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 689999999999999868-8976999999999987799999999999999868898799999999999759999999999
Q ss_pred HHHHHCCCCCH-HHHHHH------------HHHHHCCCCHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHCCCHHH
Q ss_conf 99866359997-589999------------99982469889999999995751499999--7248999998872299289
Q 001852 723 DEMLKYVKPDH-VTFVSL------------LSACNHGGLVDKGLQYYNTMTTEFGVPAG--IEHCVCIIDLLGRSGRLAE 787 (1004)
Q Consensus 723 ~~m~~~~~pd~-~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~e 787 (1004)
+++... .|+. ..+..+ +.+|.+.|++++|..+|+.+.+.....|. ..+|.+++.++.+.|++++
T Consensus 235 ~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 235 RECLKL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999875-9980899999999999999999999998717999999999999850873368999999999999998788999
Q ss_pred HHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHH------------HHHHHCC--CC
Q ss_conf 99998819-9999-9998999999999619999999999999822999987712153------------3733219--95
Q 001852 788 AETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYS------------NVCAATG--RW 851 (1004)
Q Consensus 788 A~~~i~~m-~~~p-~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~------------~~y~~~g--~~ 851 (1004)
|.+.++++ ...| +..+|..++.+|...|+.+.|...++++++++|+++..+..++ +.|...| +|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 99999999884845489999999999870379999999999988593529999999999998643350569998189866
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 0899999998328994379
Q 001852 852 DDVENVRRQMGWNKIKKKP 870 (1004)
Q Consensus 852 ~~a~~~~~~m~~~~~~~~~ 870 (1004)
....++++.+++..++..|
T Consensus 394 ~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCG
T ss_pred CCHHHHHHHHHHHHHHHCC
T ss_conf 8989999999999997598
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=198.26 Aligned_cols=368 Identities=14% Similarity=0.124 Sum_probs=226.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 9970899799999999965529767774-599998861699873889999999999579983679999999777059938
Q 001852 404 SHVQDEKYIDALKIFSNMLQKQRLVNYV-TFTSALAACSDPGFVVQGKIIHALVITMGLHDNLIVGNALVSMYAKSGMMS 482 (1004)
Q Consensus 404 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 482 (1004)
.+.+.|++++|...+.++... .|+.. .+..+...+...++.+.+...+....+.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHH
T ss_conf 998779999999999999984--97889999999999998689999999999997619-786699999999998779999
Q ss_pred HHHHHHHCCC--CC-CEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHCCCCHHHHHH
Q ss_conf 8999985199--99-80002431477640799038999999987619999821599899851388300100211345666
Q 001852 483 EAKQVFRIMP--KR-DTVTWNALIGGHSEKEEPDKALKAYKRMREEGTPMNYITFANVLGACLNPGDLLIHGMPIHTHIV 559 (1004)
Q Consensus 483 ~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~ 559 (1004)
+|...|+.+. .| +...|..+...+...|++++|+..|+++... .|+..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~--------------------------- 135 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLY--------------------------- 135 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCT---------------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH---------------------------
T ss_conf 9999999998749653999999999999858999999999999975--98968---------------------------
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 543567413785995699981992669999840899---87769999999998269927999999996224977793019
Q 001852 560 LTGFESHKYVQNSLITMYAKCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSL 636 (1004)
Q Consensus 560 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 636 (1004)
..+..+...|...|++++|...|+++.. .+..+|..+...|...|++++|+..|+++... .|+
T Consensus 136 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~---- 201 (388)
T 1w3b_A 136 --------CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN---- 201 (388)
T ss_dssp --------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT----
T ss_pred --------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCC----
T ss_conf --------999999999998468999999999998729897899999999999859999999999999855--988----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCC
Q ss_conf 999999961431999999999999839999813784998469851993448554287888---99228999999998139
Q 001852 637 SEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHG 713 (1004)
Q Consensus 637 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 713 (1004)
+...+..+...|...|++++|...|++... .+...|..++..|...|
T Consensus 202 ------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 202 ------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp ------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf ------------------------------67999999999998578999999999998529687899999999999868
Q ss_pred CHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 989999999998663599-9758999999982469889999999995751499999724899999887229928999998
Q 001852 714 YFQKAIETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFI 792 (1004)
Q Consensus 714 ~~~~A~~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i 792 (1004)
+.++|++.|+++.+. .| +..++..+..++...|++++|...|+.+.+. .+.+...+..++.++.+.|++++|.+.+
T Consensus 252 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 252 LIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp CHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 899999999999864-9998899999999999869979999999999864--9444999999999999848999999999
Q ss_pred HHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCC
Q ss_conf 819-99999-99899999999961999999999999982299998771215337332199
Q 001852 793 NKM-PVTPN-DLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGR 850 (1004)
Q Consensus 793 ~~m-~~~p~-~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 850 (1004)
+++ ...|+ ...|..+...+...|+.+.|...++++++++|+++..|..++++|...|+
T Consensus 329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999860987399997799999986888999999999986199978999859999987459
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=193.39 Aligned_cols=291 Identities=16% Similarity=0.118 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q ss_conf 13785995699981992669999840899---877699999999982699279999999962249777930199-99999
Q 001852 567 KYVQNSLITMYAKCGDLNSSNYIFEGLAE---KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLS-EGLAA 642 (1004)
Q Consensus 567 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a 642 (1004)
...+..+...|.+.|++++|...|+++.. .+..+|..+...+.+.|++++|+..|+++... .|+..... .+-..
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_conf 6999999999987799999999999998749653999999999999858999999999999975--98968999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 961431999999999999839999813784998469851993448554287888---99228999999998139989999
Q 001852 643 AAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAI 719 (1004)
Q Consensus 643 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 719 (1004)
+...|+.++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.. .+...|..+...+...|+.++|+
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 998468999999999998729-8978999999999998599999999999998559886799999999999857899999
Q ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-C-
Q ss_conf 999998663599-9758999999982469889999999995751499999724899999887229928999998819-9-
Q 001852 720 ETFDEMLKYVKP-DHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM-P- 796 (1004)
Q Consensus 720 ~l~~~m~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m-~- 796 (1004)
..|++.... .| +..++..+..++...|++++|...|+.+.+. .+.....|..++.++.+.|++++|.+.++++ .
T Consensus 224 ~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 224 AAYLRALSL-SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999852-9687899999999999868899999999999864--9998899999999999869979999999999864
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999998999999999619999999999999822999987712153373321995089999999832
Q 001852 797 VTPNDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 797 ~~p~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.+++...|..+...+...|+.+.|...+++++++.|+++..+..++.+|...|++++|....+.+.+
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9444999999999999848999999999999860987399997799999986888999999999986
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=186.52 Aligned_cols=194 Identities=9% Similarity=-0.002 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 13784998469851993448554287888---992289999999981399899999999986635999758999999982
Q 001852 668 PFVTNAAMDMYGKCGEIGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACN 744 (1004)
Q Consensus 668 ~~~~~~Li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~ 744 (1004)
...+..+...|...|++++|...+++... .+...|..+...+...|+.++|+..|+++.+..+.+...+..+...+.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 89999999999988889999999999861386778999999999998077999999999998738502899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHH---
Q ss_conf 469889999999995751499999724899999887229928999998819----99999----9989999999996---
Q 001852 745 HGGLVDKGLQYYNTMTTEFGVPAGIEHCVCIIDLLGRSGRLAEAETFINKM----PVTPN----DLVWRSLLASSKI--- 813 (1004)
Q Consensus 745 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~i~~m----~~~p~----~~~~~~Ll~~~~~--- 813 (1004)
..|++++|..+++.+.+.. +.+...+..++.++.+.|++++|...++++ |..|+ ...|..+...+..
T Consensus 350 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8689999999999999875--46778999999999878899999999999997612332178999999999999866332
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 19999999999999822999987712153373321995089999999832
Q 001852 814 HGNVELAKKAAEHLFELDPSDDSSYVLYSNVCAATGRWDDVENVRRQMGW 863 (1004)
Q Consensus 814 ~g~~e~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 863 (1004)
.|+.+.|...+++++++.|+++..+..++.+|...|++++|....+...+
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 58889999999999875855589999999999982579999999999987
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=180.57 Aligned_cols=237 Identities=13% Similarity=0.015 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 785995699981992669999840899--877699999999982699279999999962249777930199999999614
Q 001852 569 VQNSLITMYAKCGDLNSSNYIFEGLAE--KNSVTWNAMIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKL 646 (1004)
Q Consensus 569 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 646 (1004)
.+..+...|...|++++|...|+.+.+ ++...|..+...|...|++++|+..++++...
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 299 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKL------------------- 299 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------
T ss_conf 9999999999878999999999999863864899999999999888899999999998613-------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 3199999999999983999981378499846985199344855428788---8992289999999981399899999999
Q 001852 647 AVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGEIGDVLRIAPQPV---DRPRLSWNILISVFARHGYFQKAIETFD 723 (1004)
Q Consensus 647 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 723 (1004)
. +.+...+..+...|...|++++|...|++.. ..+...|..+...+...|+.++|+..++
T Consensus 300 ----------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 300 ----------------D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp ----------------C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred ----------------C-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ----------------8-67789999999999980779999999999987385028999999999998689999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----CCHHHHHHHHHHH---CCCHHHHHHHHHHC-
Q ss_conf 986635999758999999982469889999999995751499999----7248999998872---29928999998819-
Q 001852 724 EMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMTTEFGVPAG----IEHCVCIIDLLGR---SGRLAEAETFINKM- 795 (1004)
Q Consensus 724 ~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r---~g~~~eA~~~i~~m- 795 (1004)
++.+..+.+..++..+...+...|++++|..+++.+.......+. ...+..++.++.+ .|++++|.+.++++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99987546778999999999878899999999999997612332178999999999999866332588899999999998
Q ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHH
Q ss_conf 9999-999899999999961999999999999982299998771215
Q 001852 796 PVTP-NDLVWRSLLASSKIHGNVELAKKAAEHLFELDPSDDSSYVLY 841 (1004)
Q Consensus 796 ~~~p-~~~~~~~Ll~~~~~~g~~e~a~~~~~~~~~l~p~~~~~~~~l 841 (1004)
...| +..+|..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 443 KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 75855589999999999982579999999999987661468899999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=172.29 Aligned_cols=231 Identities=13% Similarity=0.018 Sum_probs=125.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999826992799999999622497779301999999996143199999999999983999981378499846985199
Q 001852 604 MIAANALHGQGEEVLKLLVKMRHTGVYFDRFSLSEGLAAAAKLAVLEEGHQLHGLATKLGFDLDPFVTNAAMDMYGKCGE 683 (1004)
Q Consensus 604 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 683 (1004)
+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 999987545578999999999866--9874699999999998037999999999975459-9987999999999986689
Q ss_pred HHHHHHHCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 3448554287888---9922899999999813998999999999866359997589999999824698899999999957
Q 001852 684 IGDVLRIAPQPVD---RPRLSWNILISVFARHGYFQKAIETFDEMLKYVKPDHVTFVSLLSACNHGGLVDKGLQYYNTMT 760 (1004)
Q Consensus 684 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 760 (1004)
+++|...|++... .+...|..+...+...|+.++|++.|+++.+..+.+...+..+...+...|++++|...|+.+.
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999985999779999999999984779999999999987399985999999999988378899999999998
Q ss_pred HHCCCCCCC----CHHHHHHHHHHHC----------CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 514999997----2489999988722----------9928999998819-9999-9998999999999619999999999
Q 001852 761 TEFGVPAGI----EHCVCIIDLLGRS----------GRLAEAETFINKM-PVTP-NDLVWRSLLASSKIHGNVELAKKAA 824 (1004)
Q Consensus 761 ~~~~~~p~~----~~y~~lv~~l~r~----------g~~~eA~~~i~~m-~~~p-~~~~~~~Ll~~~~~~g~~e~a~~~~ 824 (1004)
+.....+.. ..+...+.++.+. |++++|...+++. ...| +..+|..+...+...|+.+.|...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 70976244688899999889999997640100224757999999999999749997899999999999851499999999
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9998229999877
Q 001852 825 EHLFELDPSDDSS 837 (1004)
Q Consensus 825 ~~~~~l~p~~~~~ 837 (1004)
++++++.|.++..
T Consensus 486 ~~al~~~~~~~~~ 498 (537)
T 3fp2_A 486 EDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHC--CHHH
T ss_pred HHHHHHCCCCHHH
T ss_conf 9999868993888
Done!