Query 001853
Match_columns 1004
No_of_seqs 226 out of 560
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1896 mRNA cleavage and poly 100.0 1E-149 3E-154 1317.6 74.5 875 2-1001 1-953 (1366)
2 KOG1897 Damage-specific DNA bi 100.0 2.2E-89 4.7E-94 797.3 68.3 693 2-1001 1-714 (1096)
3 COG5161 SFT1 Pre-mRNA cleavage 100.0 2.4E-79 5.2E-84 697.3 45.9 826 1-1001 1-908 (1319)
4 KOG1898 Splicing factor 3b, su 100.0 1.4E-68 3E-73 625.1 49.8 737 3-1001 2-778 (1205)
5 PF10433 MMS1_N: Mono-function 100.0 2.4E-55 5.2E-60 525.0 48.2 434 131-693 1-483 (504)
6 PF08596 Lgl_C: Lethal giant l 90.3 8.9 0.00019 44.9 16.7 75 753-857 99-174 (395)
7 COG4247 Phy 3-phytase (myo-ino 90.1 4.4 9.5E-05 43.6 12.4 128 606-770 52-187 (364)
8 PF14727 PHTB1_N: PTHB1 N-term 90.1 31 0.00067 40.7 20.8 69 913-982 243-316 (418)
9 KOG0294 WD40 repeat-containing 87.8 16 0.00035 40.6 15.0 81 659-778 44-124 (362)
10 PF14727 PHTB1_N: PTHB1 N-term 85.3 87 0.0019 37.1 25.9 76 56-149 89-164 (418)
11 COG5161 SFT1 Pre-mRNA cleavage 84.9 0.22 4.9E-06 60.7 -0.8 90 100-206 88-177 (1319)
12 KOG1274 WD40 repeat protein [G 81.8 1E+02 0.0022 39.1 19.6 147 578-781 27-180 (933)
13 COG2706 3-carboxymuconate cycl 80.8 1.1E+02 0.0024 34.9 24.3 69 129-210 50-122 (346)
14 PF14783 BBS2_Mid: Ciliary BBS 80.8 51 0.0011 31.4 13.3 92 623-765 19-110 (111)
15 KOG1539 WD repeat protein [Gen 78.3 1E+02 0.0022 38.8 17.9 81 661-781 205-287 (910)
16 KOG0649 WD40 repeat protein [G 77.4 1E+02 0.0023 33.4 15.6 73 667-776 167-242 (325)
17 PF03178 CPSF_A: CPSF A subuni 73.9 19 0.00042 40.6 10.3 69 56-158 99-167 (321)
18 KOG0294 WD40 repeat-containing 70.3 1.9E+02 0.0042 32.6 22.6 95 63-207 62-157 (362)
19 COG2706 3-carboxymuconate cycl 69.7 90 0.0019 35.5 13.7 71 130-207 202-274 (346)
20 PF02333 Phytase: Phytase; In 69.5 73 0.0016 37.1 13.5 61 678-769 127-189 (381)
21 PF03178 CPSF_A: CPSF A subuni 68.1 2.1E+02 0.0046 32.2 19.6 63 64-158 62-124 (321)
22 KOG0310 Conserved WD40 repeat- 67.7 2.6E+02 0.0057 33.1 18.7 101 628-777 175-276 (487)
23 PF10282 Lactonase: Lactonase, 67.2 1.2E+02 0.0026 34.7 15.0 89 100-209 26-119 (345)
24 KOG2048 WD40 repeat protein [G 67.1 2.8E+02 0.0061 34.3 17.7 29 180-208 478-506 (691)
25 KOG0318 WD40 repeat stress pro 66.5 2.8E+02 0.0062 33.3 17.2 118 606-772 403-520 (603)
26 KOG2110 Uncharacterized conser 63.4 2.8E+02 0.0061 31.9 18.4 156 611-857 89-249 (391)
27 cd00200 WD40 WD40 domain, foun 61.9 2E+02 0.0044 29.8 29.9 75 661-776 180-256 (289)
28 KOG0289 mRNA splicing factor [ 61.2 3.3E+02 0.0071 32.0 16.5 113 659-855 306-418 (506)
29 KOG2048 WD40 repeat protein [G 57.5 4.6E+02 0.0099 32.5 44.4 97 56-204 38-137 (691)
30 KOG2111 Uncharacterized conser 56.9 99 0.0021 34.7 10.9 22 749-770 236-257 (346)
31 KOG2110 Uncharacterized conser 54.5 3.9E+02 0.0085 30.8 15.4 28 830-857 304-331 (391)
32 KOG2055 WD40 repeat protein [G 54.1 51 0.0011 38.6 8.5 91 827-960 216-309 (514)
33 PF07569 Hira: TUP1-like enhan 51.5 54 0.0012 35.2 8.0 73 751-855 22-94 (219)
34 KOG0285 Pleiotropic regulator 50.2 2.3E+02 0.0049 32.5 12.4 123 630-770 258-390 (460)
35 KOG0306 WD40-repeat-containing 49.7 5.1E+02 0.011 32.6 16.1 122 660-856 414-538 (888)
36 KOG0772 Uncharacterized conser 48.8 1.7E+02 0.0037 35.0 11.6 108 574-687 225-348 (641)
37 KOG1897 Damage-specific DNA bi 48.4 66 0.0014 41.1 8.8 84 5-150 764-858 (1096)
38 KOG2055 WD40 repeat protein [G 46.4 5.7E+02 0.012 30.4 17.6 25 752-776 316-340 (514)
39 KOG0772 Uncharacterized conser 46.2 75 0.0016 37.8 8.2 111 668-855 281-393 (641)
40 PF08596 Lgl_C: Lethal giant l 46.2 1.6E+02 0.0036 34.5 11.4 96 668-777 155-251 (395)
41 KOG0319 WD40-repeat-containing 45.5 3.6E+02 0.0078 33.7 14.0 117 607-770 322-443 (775)
42 KOG0283 WD40 repeat-containing 45.4 7.1E+02 0.015 31.4 16.8 196 660-986 371-568 (712)
43 KOG1407 WD40 repeat protein [F 44.7 1.9E+02 0.0041 31.8 10.4 98 629-778 87-186 (313)
44 KOG0641 WD40 repeat protein [G 44.5 4.3E+02 0.0093 28.4 15.6 53 184-255 96-148 (350)
45 PF14781 BBS2_N: Ciliary BBSom 43.8 1.6E+02 0.0034 29.2 8.9 72 56-152 11-83 (136)
46 KOG0279 G protein beta subunit 43.5 5.1E+02 0.011 28.9 17.1 117 661-856 195-313 (315)
47 KOG4378 Nuclear protein COP1 [ 41.1 3.6E+02 0.0078 32.2 12.6 87 659-784 122-210 (673)
48 KOG1446 Histone H3 (Lys4) meth 41.0 5.6E+02 0.012 28.9 13.5 113 628-784 161-277 (311)
49 PF12894 Apc4_WD40: Anaphase-p 39.3 54 0.0012 26.2 4.2 41 101-149 2-42 (47)
50 PF14779 BBS1: Ciliary BBSome 38.7 1.8E+02 0.0039 32.0 9.5 62 55-146 195-256 (257)
51 PF02239 Cytochrom_D1: Cytochr 38.0 2.4E+02 0.0052 32.8 11.1 81 100-205 25-106 (369)
52 KOG0289 mRNA splicing factor [ 37.8 7.5E+02 0.016 29.2 17.6 100 575-687 314-420 (506)
53 KOG0291 WD40-repeat-containing 37.5 9.6E+02 0.021 30.4 56.5 160 535-719 285-448 (893)
54 KOG1538 Uncharacterized conser 37.0 5.2E+02 0.011 32.1 13.3 18 56-73 25-42 (1081)
55 KOG0647 mRNA export protein (c 37.0 1.9E+02 0.0042 32.3 9.2 55 660-718 158-212 (347)
56 PRK11028 6-phosphogluconolacto 36.7 6.1E+02 0.013 28.3 14.1 87 100-208 69-157 (330)
57 KOG0295 WD40 repeat-containing 36.3 4.5E+02 0.0097 30.3 12.0 62 750-856 303-364 (406)
58 KOG0296 Angio-associated migra 35.6 7.5E+02 0.016 28.6 13.8 118 602-778 111-229 (399)
59 PTZ00421 coronin; Provisional 34.6 9.1E+02 0.02 29.3 16.2 119 658-855 75-197 (493)
60 KOG0276 Vesicle coat complex C 34.5 2.9E+02 0.0062 34.0 10.7 97 668-852 25-121 (794)
61 KOG0316 Conserved WD40 repeat- 33.5 6.7E+02 0.014 27.4 16.4 166 577-776 81-264 (307)
62 cd00200 WD40 WD40 domain, foun 32.8 5.6E+02 0.012 26.3 26.8 29 660-688 137-167 (289)
63 KOG1274 WD40 repeat protein [G 32.0 1.2E+03 0.027 30.0 20.3 53 628-689 117-171 (933)
64 PF06977 SdiA-regulated: SdiA- 30.9 82 0.0018 34.5 5.4 60 375-438 184-248 (248)
65 KOG0643 Translation initiation 29.7 7.2E+02 0.016 27.6 11.9 66 611-687 54-129 (327)
66 KOG0295 WD40 repeat-containing 29.1 2.8E+02 0.006 31.9 9.0 70 668-778 304-373 (406)
67 PF07569 Hira: TUP1-like enhan 28.2 2.6E+02 0.0057 29.9 8.6 33 660-692 14-46 (219)
68 PF12894 Apc4_WD40: Anaphase-p 27.7 61 0.0013 25.9 2.8 24 751-775 23-46 (47)
69 KOG1898 Splicing factor 3b, su 27.7 1.6E+03 0.034 29.8 21.4 58 131-200 299-356 (1205)
70 KOG0288 WD40 repeat protein Ti 27.4 6.6E+02 0.014 29.5 11.6 27 751-777 399-425 (459)
71 KOG0641 WD40 repeat protein [G 26.3 8.4E+02 0.018 26.3 11.5 19 106-124 131-150 (350)
72 KOG0639 Transducin-like enhanc 25.4 5.9E+02 0.013 30.6 11.0 36 751-786 521-556 (705)
73 KOG0285 Pleiotropic regulator 25.0 2.4E+02 0.0051 32.4 7.5 61 750-855 162-222 (460)
74 PRK11028 6-phosphogluconolacto 24.6 1E+03 0.022 26.6 31.4 99 62-207 10-110 (330)
75 PF10282 Lactonase: Lactonase, 24.1 1.1E+03 0.024 26.8 31.1 96 100-208 75-175 (345)
76 KOG0288 WD40 repeat protein Ti 24.0 4.7E+02 0.01 30.6 9.7 85 102-207 333-417 (459)
77 KOG4649 PQQ (pyrrolo-quinoline 24.0 6E+02 0.013 28.1 10.0 73 361-439 52-124 (354)
78 KOG0283 WD40 repeat-containing 23.5 4.6E+02 0.01 33.0 10.3 75 660-776 411-488 (712)
79 PTZ00420 coronin; Provisional 23.4 1.5E+03 0.032 28.1 18.7 84 660-777 76-164 (568)
80 PTZ00420 coronin; Provisional 22.9 1.5E+03 0.033 28.0 23.0 50 939-989 283-333 (568)
81 KOG0263 Transcription initiati 22.6 8.7E+02 0.019 30.6 12.3 113 611-770 529-650 (707)
82 KOG0278 Serine/threonine kinas 22.0 1.9E+02 0.004 31.6 5.8 69 924-998 236-310 (334)
83 PF02239 Cytochrom_D1: Cytochr 21.7 8.3E+02 0.018 28.3 11.8 83 100-206 109-201 (369)
84 PF11715 Nup160: Nucleoporin N 21.7 4.6E+02 0.01 32.0 10.3 30 751-780 230-259 (547)
85 KOG3881 Uncharacterized conser 20.3 1.1E+03 0.023 27.6 11.5 29 659-687 106-134 (412)
No 1
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.4e-149 Score=1317.60 Aligned_cols=875 Identities=40% Similarity=0.664 Sum_probs=730.2
Q ss_pred chhhhhhccCCCceeeEEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCeEEEEcCCEEEEEEEEecccccccc
Q 001853 2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES 81 (1004)
Q Consensus 2 ~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~~~~~~ 81 (1004)
+|++|++.|+||+|+||++|+||.... +||||+++|.|+||++.++.+..+..
T Consensus 1 m~~vykq~h~~T~ve~s~ag~Ft~~~~---------------------------~nlvV~~~N~L~vyri~~~~e~~t~~ 53 (1366)
T KOG1896|consen 1 MFAVYKQEHDPTVVENSSAGLFTNNRT---------------------------ENLVVAGTNILRVYRISRDAEALTKN 53 (1366)
T ss_pred CcchhhhccCchhhccceeeeEecCCC---------------------------cceEEecccEEEEEEeccchhhcccc
Confidence 468999999999999999999998877 99999999999999998764221110
Q ss_pred cCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEeee
Q 001853 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1004)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh~ 161 (1004)
+ +..|++....+|+|+++|++||+|++|++++.+++ .+|+|+++|++||+|++|||+.+|.|+|+||||
T Consensus 54 -~------~~~~~~~~~~~LeLv~~~~l~GnV~si~~~~~~gs----~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHy 122 (1366)
T KOG1896|consen 54 -D------PGDMGKAHRKKLELVAEFKLFGNVTSIAKLPLKGS----NRDALLLLFKDAKISVLEFDPQTNSLRTLSLHY 122 (1366)
T ss_pred -C------ccccccccceEEEEEEEEEeecceeeEEEeecCCC----CcceEEEEeccceEEEEEecCCccceeeeeeEE
Confidence 1 11222223347999999999999999999999999 899999999999999999999999999999999
Q ss_pred ecCcchhcccCCcccccCCCeEEECCCCCEEEEEEecCeEEEEEcccCCCCCCCCCCCCCCCCCcccceeeeEEEEeccc
Q 001853 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1004)
Q Consensus 162 ~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~~~~L~ilP~~~~~~~l~~~d~~~~~~~~~~~~~~~s~~i~l~~l 241 (1004)
||+++ .+.|++....+|.++|||++||++|++|+..|+||||++.+ .+++++.- ..+...++++.+||+|.+++|
T Consensus 123 fE~~~---~~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m~iLpf~~~e-~~~~~~~~-~~~~~~ss~~~pSyvi~~reL 197 (1366)
T KOG1896|consen 123 FEGPE---FRKGLVGRAKIPTVRVDPDSRCALLLVYGLRMAILPFRVNE-HLDDEELF-PSGFSKSSFTAPSYVIALREL 197 (1366)
T ss_pred ecccc---ccccccccccCceEEECCCCCeEEEEEecceEEEeeccccc-cccccccc-cccccccccccceeEEEhhhh
Confidence 99998 55677766789999999999999999999999999998864 45444321 123344568999999999999
Q ss_pred C--CCceeeEEEecCCCCceEEEEEEccCCcccceeeeeeeEEEEEEeeccccccccceeeeccCCCCCcEEEEecCCCC
Q 001853 242 D--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIG 319 (1004)
Q Consensus 242 d--i~nViD~~FL~gy~ePtlaiLye~~~tw~gr~~~r~dt~~~~~~sLn~~~k~~~~i~s~~~LP~d~~~lipvP~plG 319 (1004)
| |+||+|++|||||+|||+||||||.+||+||+..|+|||.+.+++||+.+|.||+||++.+||+||+++.++|.|+|
T Consensus 198 deki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piG 277 (1366)
T KOG1896|consen 198 DEKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIG 277 (1366)
T ss_pred hhhhccceeEEeecCcccceEEEEecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCc
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCeEEEEeCCC-ceeEeecccccccCCCcCCCCCccEEEecceeEEEeeCCEEEEEeCCCCEEEEEEEEC-Cce
Q 001853 320 GVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYD-GRV 397 (1004)
Q Consensus 320 GvLVig~n~Iiy~dq~~-~~~v~vN~~~~~~t~~~~~~~~~~~i~l~~~~~~~l~~~~~Ll~~~~G~L~~L~l~~d-gr~ 397 (1004)
||||++.|.++|++|++ +++|++|.++...+.||+.+|+.+.|.|+|+..+|++.++++++..+|++|+|+|.+| +|.
T Consensus 278 gvLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~ 357 (1366)
T KOG1896|consen 278 GVLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSGVRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRS 357 (1366)
T ss_pred cEEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccceEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccc
Confidence 99999999999999999 7999999999999999999999999999999999999999999999999999999999 799
Q ss_pred EeEEEEEecCCCcccceEEEEcCCeEEEEeeeCCeeEEEEeeCCCcccccCCCccccCCcccCCccccccccCCcccccc
Q 001853 398 VQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD 477 (1004)
Q Consensus 398 V~~l~l~~~g~~~~~S~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1004)
|+.+++.++...++++|++..+|++||+||+.|||+|++|+++.... ..+...+..+.+.+....+++ ++
T Consensus 358 V~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~--~e~~~re~~d~~~~~~~~~~~--------d~ 427 (1366)
T KOG1896|consen 358 VQLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRA--SEGVRREEGDTESDGYSKKRV--------DD 427 (1366)
T ss_pred hhhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccC--CccccccccCCcCCcchhhcc--------cc
Confidence 99999999999999999999999999999999999999999875421 111111111111111111111 11
Q ss_pred cccccccc-------------cccCCCCCcccccceeeEEEeeeecccCCcccccccccccCC---------------CC
Q 001853 478 MVNGEELS-------------LYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINAD---------------AS 529 (1004)
Q Consensus 478 ~~d~~~~~-------------ly~~~~~~~~~~~~~~~l~v~Dsl~NigPI~D~~vg~~~~~~---------------~~ 529 (1004)
+.|...++ -||++... ....|.|++||+|+|||||.||++|+....+ +.
T Consensus 428 ~~d~~~~d~~~~~~~~~g~~~~~g~~a~~---t~~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~ 504 (1366)
T KOG1896|consen 428 TQDVRRDDEKSAELFEAGSEENYGSGAQE---TVQPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVA 504 (1366)
T ss_pred hhhhhhhhhhccchhhccccccCCcccce---eeeeeEEeehhccccccccccceeccccchhhhccCCCCCCCeEEEEE
Confidence 11111111 22222221 1233899999999999999999999876543 13
Q ss_pred ceeccCCceEEE------------EeCCCccEeEEEeecCCCCCCCCcccccccCcccccEEEEEecCceEEEEecCcee
Q 001853 530 ATGISKQSNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLT 597 (1004)
Q Consensus 530 ~sG~g~~GsL~v------------~~lpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~~~~l~ 597 (1004)
|+|+|++|+|++ |+||||.++|||..+..+++ .++..|.||++|..++|+||++++++.
T Consensus 505 ~sGhgkngaL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~---------~~~~~h~~lilS~e~~t~il~tge~~~ 575 (1366)
T KOG1896|consen 505 TSGHGKNGALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKRE---------EDNTQHLYLILSTESRTMILETGEELL 575 (1366)
T ss_pred eccCCCCcceEEEeecccceeeEEEEecCeeeEEEEEEeccccc---------cccCcceEEEeecccchhhhhccchhh
Confidence 999999999999 78999999999998654432 223459999999999999999999999
Q ss_pred EEecCCCccccCCeEEEEEeCCCcEEEEEecCcEEEEeCC-cceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEe
Q 001853 598 EVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMS 676 (1004)
Q Consensus 598 ev~~~~~F~~~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~-~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~ 676 (1004)
|++ .++|..+++||+||++|++++|||||++++|++|++ ++.|.+++. .| ..+++++++||||++...
T Consensus 576 Ev~-~s~f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd-----~~-----~~vv~~sv~dpyv~v~~~ 644 (1366)
T KOG1896|consen 576 EVS-GSGFTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFD-----SG-----AIVVQTSVADPYVAVRSS 644 (1366)
T ss_pred hcc-cceeEeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccc-----cC-----CcEEEEeccCceEEEEEc
Confidence 999 999999999999999999999999999999999995 689999883 33 459999999999999999
Q ss_pred CCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccc------cccccCc-------cccccCCCC
Q 001853 677 DGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTST------DAWLSTG-------VGEAIDGAD 743 (1004)
Q Consensus 677 ~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~------~~~~~~~-------~~~~~~~~~ 743 (1004)
.|.|.+|.++.+..+|-+..+ . +.++.++|++.|.+| +|.+-.. ..++-.+ ....+++++
T Consensus 645 ~g~i~~~~l~~~s~rl~~~~~---~--s~~~~sv~~~~dlsg--~f~~~s~l~~k~~~~~gr~~~~~~~~~~~~kv~~~e 717 (1366)
T KOG1896|consen 645 EGRITLYDLEEKSHRLALHDP---M--SFKVVSVSLPADLSG--MFTTLSDLSLKGNEANGRSSEAEGLQSLPCKVDDEE 717 (1366)
T ss_pred CCceEEEEeccccchhhccCc---c--cceeEEEechhhhcc--ceEEEeeecccCcccccccccccccccCCccccCCC
Confidence 999999999998877776665 2 667999999999999 7765441 1111111 012344443
Q ss_pred CCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccc
Q 001853 744 GGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMK 823 (1004)
Q Consensus 744 ~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1004)
.....+..+||++++++|.|+||++|++++||.++.|+.++++|.|......+.+ .....+.
T Consensus 718 gg~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~~~------------------~~s~~~~ 779 (1366)
T KOG1896|consen 718 GGSPEQEPYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPTTN------------------KESEDLE 779 (1366)
T ss_pred CCCcccCceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCcccc------------------ccccchH
Confidence 2111222399999999999999999999999999999999999988654443221 0012357
Q ss_pred eEEEEEeecCCC--CCCcEEEEEeeCCcEEEEEEEeecCCCCCCCCCCCCcccccccccccccccccceeEEeccCCcCC
Q 001853 824 VVELAMQRWSAH--HSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYT 901 (1004)
Q Consensus 824 i~eill~~lg~~--~~~p~L~v~~~~g~l~iY~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrf~Kv~~~~~~ 901 (1004)
++++.+..||.+ ..+|||++.+.+|++++|++|+.... +.++++|+|+|+....
T Consensus 780 l~q~~~~~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~~------------------------~~~~~~f~kvp~~~~~ 835 (1366)
T KOG1896|consen 780 LKQLFVNPLGSEIVFKEPHLFLVVSDNEILIYKAFPQLSQ------------------------GNLKVFFKKVPHNLNI 835 (1366)
T ss_pred HHHhhccccchhhhccCCceEEEEeCceEEEEeeccccCc------------------------cchhhhhhhCCHhhcc
Confidence 899999999988 77899999999999999999961110 2388999999985332
Q ss_pred C----------C------CCC-CCCCccceEEecccCCceEEEecCCCCeEE-EEcccccEEEeccCCCceEEEecCCCC
Q 001853 902 R----------E------ETP-HGAPCQRITIFKNISGHQGFFLSGSRPCWC-MVFRERLRVHPQLCDGSIVAFTVLHNV 963 (1004)
Q Consensus 902 ~----------~------~~~-~~~~~~~l~~f~~i~g~sgVFv~G~~P~~i-~~~~~~l~~~~~~~~~~v~~f~~F~~~ 963 (1004)
+ + +.+ .+...++|++|++|+||+||||||.+|+|| .+.||.+|+||+.++|+|.+|+||||+
T Consensus 836 ~~~~p~~~~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnv 915 (1366)
T KOG1896|consen 836 RTDKPHFLCKKREGGGAEEGASVSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNV 915 (1366)
T ss_pred cccCCcccchhhccccccccccccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeecc
Confidence 1 1 111 346788999999999999999999999999 689999999999999999999999999
Q ss_pred CCCCcEEEEecCCcEEEEECCCCCccccCccceEEeee
Q 001853 964 NCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFF 1001 (1004)
Q Consensus 964 ~~~~gfiy~~~~~~lri~~lp~~~~~d~~wp~rkvpl~ 1001 (1004)
|||+||||+|.+|.+|||++|..+.||+.||+||||||
T Consensus 916 n~p~gfiyvd~~~~l~i~~lp~~~~Ydn~wPvkkIpl~ 953 (1366)
T KOG1896|consen 916 NCPRGFIYVDRQGELVICVLPEALSYDNKWPVKKIPLR 953 (1366)
T ss_pred CCCcceEEECCCceEEEEEcchhcccCCCCcccccccc
Confidence 99999999999999999999999999999999999998
No 2
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-89 Score=797.26 Aligned_cols=693 Identities=19% Similarity=0.308 Sum_probs=569.6
Q ss_pred chhhhhhccCCCceeeEEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCeEEEEcCCEEEEEEEEecccccccc
Q 001853 2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES 81 (1004)
Q Consensus 2 ~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~~~~~~ 81 (1004)
+|+|..++|+||+|.+|+.|||+++.. .||+|||+|+|+||.+.++|
T Consensus 1 ~~~Y~vtaqkpT~V~~av~gnFts~e~---------------------------~nlivAk~~~lei~~~~~~G------ 47 (1096)
T KOG1897|consen 1 SMNYVVTAQKPTAVVTAVVGNFTSPEN---------------------------LNLIVAKGNRLEILLVEPNG------ 47 (1096)
T ss_pred CeeEEEEecCCceEeEEEeecccCccc---------------------------eeeeeeccceEEEEeecccc------
Confidence 477888899999999999999999988 99999999999999998876
Q ss_pred cCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEeee
Q 001853 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1004)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh~ 161 (1004)
|+.+++.++||+|..|+.+|++++ .+|+|+|+|+++++++|+||.+..+..|+.+..
T Consensus 48 -------------------Lq~i~sv~ifg~I~~i~~fRp~g~----~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~ 104 (1096)
T KOG1897|consen 48 -------------------LQPITSVPIFGTIATIALFRPPGS----DKDYLFVATDSYRYFILEWDEESIQVVTRAHGD 104 (1096)
T ss_pred -------------------ceeeEeeccceeEEEEEeecCCCC----CcceEEEEECcceEEEEEEccccceEEEEeccc
Confidence 999999999999999999999999 999999999999999999999877788887655
Q ss_pred ecCcchhcccCCcccccCCCeEEECCCCCEEEEEEecCeEEEEEcccCCCCCCCCCCCCCCCCCcccceeeeEEEEeccc
Q 001853 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1004)
Q Consensus 162 ~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~~~~L~ilP~~~~~~~l~~~d~~~~~~~~~~~~~~~s~~i~l~~l 241 (1004)
.. -|.| |+...++++.|||.+|.+++++|++.+.+||+....+ .........|.+++.+
T Consensus 105 v~------dr~g-r~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~s-------------ht~~s~l~~fn~rfde- 163 (1096)
T KOG1897|consen 105 VS------DRSG-RPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDES-------------HTGGSLLKAFNVRFDE- 163 (1096)
T ss_pred cc------cccc-ccCCCceEEEECCCCcEEEEEeecCeEEEEEeccccc-------------ccCcccccccccccCc-
Confidence 42 3567 6678899999999999999999999999999975421 0011234578888764
Q ss_pred CCCceeeEEEecCCCCceEEEEEEccCCcccceeeeeeeEEEEEEeeccccccc-cceeeeccCCCCCcEEEEecCCCCe
Q 001853 242 DMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQH-PLIWSAMNLPHDAYKLLAVPSPIGG 320 (1004)
Q Consensus 242 di~nViD~~FL~gy~ePtlaiLye~~~tw~gr~~~r~dt~~~~~~sLn~~~k~~-~~i~s~~~LP~d~~~lipvP~plGG 320 (1004)
.||.||+|||+...||+|+||++.. | |+.++| .||+..|.+ ...|+ .++..++..+||||.|.||
T Consensus 164 --l~v~Di~fly~~s~pt~~vly~Ds~---~----~Hv~~y----elnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gG 229 (1096)
T KOG1897|consen 164 --LNVYDIKFLYGCSDPTLAVLYKDSD---G----RHVKTY----ELNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGG 229 (1096)
T ss_pred --ceEEEEEEEcCCCCCceEEEEEcCC---C----cEEEEE----Eeccchhhccccccc-cccccCCceeeecCCCCce
Confidence 9999999999999999999999974 4 344444 567765543 46799 8999999999999999999
Q ss_pred EEEEecCeEEEEeCCCceeEeecccccccCCCcCCCCCccEEEecceeEEEee--CCEEEEEeCCCCEEEEEEEECCceE
Q 001853 321 VLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQ--NDVALLSTKTGDLVLLTVVYDGRVV 398 (1004)
Q Consensus 321 vLVig~n~Iiy~dq~~~~~v~vN~~~~~~t~~~~~~~~~~~i~l~~~~~~~l~--~~~~Ll~~~~G~L~~L~l~~dgr~V 398 (1004)
|||+|+++|+|+++....++ ++.+.+ +. .+. ++..++ ..+|||+|++|+||+|.+...+.+|
T Consensus 230 vlV~ge~~I~Y~~~~~~~ai--~p~~~~--------~~--t~~----~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~ 293 (1096)
T KOG1897|consen 230 VLVIGEEFIVYMSGDNFVAI--APLTAE--------QS--TIV----CYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETV 293 (1096)
T ss_pred EEEEeeeEEEEeeCCceeEe--cccccC--------Cc--eEE----EcccccCCccEEEEecCCCcEEEEEeecccccc
Confidence 99999999999998654433 333211 11 121 344443 4589999999999999999889888
Q ss_pred eE--EEEEecCCCcccceEEEEcCCeEEEEeeeCCeeEEEEeeCCCcccccCCCccccCCcccCCccccccccCCccccc
Q 001853 399 QR--LDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQ 476 (1004)
Q Consensus 399 ~~--l~l~~~g~~~~~S~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1004)
++ |+++++|++++|+||+||++|+||+||++|||+|+++...+
T Consensus 294 s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~----------------------------------- 338 (1096)
T KOG1897|consen 294 SGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEP----------------------------------- 338 (1096)
T ss_pred cceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccC-----------------------------------
Confidence 88 99999999999999999999999999999999999986420
Q ss_pred ccccccccccccCCCCCcccccceeeEEEeeeecccCCcccccccccccCC----CCceeccCCceEEE-----------
Q 001853 477 DMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINAD----ASATGISKQSNYEL----------- 541 (1004)
Q Consensus 477 ~~~d~~~~~ly~~~~~~~~~~~~~~~l~v~Dsl~NigPI~D~~vg~~~~~~----~~~sG~g~~GsL~v----------- 541 (1004)
| . ++| ..+++++.|||||.||+|-+..... .+|||++|+|+||+
T Consensus 339 ---d----------------~-gsy-~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A 397 (1096)
T KOG1897|consen 339 ---D----------------V-GSY-VVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELA 397 (1096)
T ss_pred ---C----------------C-Cch-hhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceee
Confidence 1 1 334 6889999999999999997643111 25999999999999
Q ss_pred -EeCCCccEeEEEeecCCCCCCCCcccccccCcccccEEEEEecCceEEEEecCceeEEecCCCccccCCeEEEEEeCCC
Q 001853 542 -VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGR 620 (1004)
Q Consensus 542 -~~lpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~~~~l~ev~~~~~F~~~~~TI~ag~l~~~ 620 (1004)
++|||+++||+++.. -++++|.|||+||.++|++|.++++++|+. ..||.++++||+|++++++
T Consensus 398 ~i~l~Gikg~w~lk~~--------------v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~-~~gf~~~~~Tif~S~i~g~ 462 (1096)
T KOG1897|consen 398 SIDLPGIKGMWSLKSM--------------VDENYDNYLVLSFISETRVLNISEEVEETE-DPGFSTDEQTIFCSTINGN 462 (1096)
T ss_pred EeecCCccceeEeecc--------------ccccCCcEEEEEeccceEEEEEccceEEec-cccccccCceEEEEccCCc
Confidence 589999999999853 467889999999999999999998899998 9999999999999999888
Q ss_pred cEEEEEecCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeeccccc
Q 001853 621 RRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAI 700 (1004)
Q Consensus 621 ~~IvQVt~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~ 700 (1004)
.++|||+++||++++.++..+|..+ ++..|..|+++..+|+|+..++.+.+++++..+. -++....+
T Consensus 463 -~lvQvTs~~iRl~ss~~~~~~W~~p----------~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~- 529 (1096)
T KOG1897|consen 463 -QLVQVTSNSIRLVSSAGLRSEWRPP----------GKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEF- 529 (1096)
T ss_pred -eEEEEecccEEEEcchhhhhcccCC----------CceEEEEEeecceEEEEecCccEEEEEEeeccce-eeeeehee-
Confidence 7999999999999999778889764 3477999999999999999989999999987762 22222222
Q ss_pred ccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCc
Q 001853 701 ESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKF 780 (1004)
Q Consensus 701 ~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~ 780 (1004)
+ ...+||--.+-| + ....+....+.+|++-.+.|..+||+.+++.. .+
T Consensus 530 ---e--~evaCLDisp~~----------------------d----~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~-~l 577 (1096)
T KOG1897|consen 530 ---E--YEVACLDISPLG----------------------D----APNKSRLLAVGLWSDISMILTFLPDLILITHE-QL 577 (1096)
T ss_pred ---c--ceeEEEecccCC----------------------C----CCCcceEEEEEeecceEEEEEECCCcceeeee-cc
Confidence 2 334477322222 1 11345689999999999999999999887762 11
Q ss_pred CccccccccccccccccccchhccCCCccccCCCCcccccccceEEEEEeecCCCCCCcEEEEEeeCCcEEEEEEEeecC
Q 001853 781 VSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEG 860 (1004)
Q Consensus 781 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~f~~~~ 860 (1004)
+ ....++.|++..++.+ +-||+|.+.||.++-|..+...+
T Consensus 578 ~--------------------------------------~~~iPRSIl~~~~e~d--~~yLlvalgdG~l~~fv~d~~tg 617 (1096)
T KOG1897|consen 578 S--------------------------------------GEIIPRSILLTTFEGD--IHYLLVALGDGALLYFVLDINTG 617 (1096)
T ss_pred C--------------------------------------CCccchheeeEEeecc--ceEEEEEcCCceEEEEEEEcccc
Confidence 1 2235788999999754 68999999999999887775333
Q ss_pred CCCCCCCCCCCcccccccccccccccccceeEEeccCCcCCCCCCCCCCCccceEEecccCCceEEEecCCCCeEEEEcc
Q 001853 861 PENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFR 940 (1004)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrf~Kv~~~~~~~~~~~~~~~~~~l~~f~~i~g~sgVFv~G~~P~~i~~~~ 940 (1004)
..++ + ||+. .|.++..||.|. ..+.+.||+++++|..||+++
T Consensus 618 ~lsd---------------------~------Kk~~----------lGt~P~~Lr~f~-sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 618 QLSD---------------------R------KKVT----------LGTQPISLRTFS-SKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred eEcc---------------------c------cccc----------cCCCCcEEEEEe-eCCceEEEEeCCCCEEEEecC
Confidence 2111 2 4554 678899999995 567899999999999999999
Q ss_pred cccEEEeccCCCceEEEecCCCCCCCCcEEEEecCCcEEEEECCCCCccccCccceEEeee
Q 001853 941 ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFF 1001 (1004)
Q Consensus 941 ~~l~~~~~~~~~~v~~f~~F~~~~~~~gfiy~~~~~~lri~~lp~~~~~d~~wp~rkvpl~ 1001 (1004)
+.+.+.|++.+ .+..+|||++..||++.++++..+ |+|.++++... ..+|+||++
T Consensus 660 ~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~~~~-l~i~tid~iqk----l~irtvpl~ 714 (1096)
T KOG1897|consen 660 GKLVYSPLSLK-EVNHMCPFNSDAYPDSLASANGGA-LTIGTIDEIQK----LHIRTVPLG 714 (1096)
T ss_pred CcEEEeccchH-HhhhhcccccccCCceEEEecCCc-eEEEEecchhh----cceeeecCC
Confidence 99999999998 899999999999999999999885 99999998765 456777765
No 3
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=2.4e-79 Score=697.29 Aligned_cols=826 Identities=18% Similarity=0.223 Sum_probs=624.0
Q ss_pred CchhhhhhccCCCceeeEEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCeEEEEcCCEEEEEEEEeccccccc
Q 001853 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1004)
Q Consensus 1 m~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~~~~~ 80 (1004)
|+ .+|.++..+|.++||+.|+||+.+. ++|+|.|+|.|+||+...++
T Consensus 1 m~-~~y~d~~d~tv~~~~~ag~Ft~s~~---------------------------~~llv~~~Nil~v~~~~~d~----- 47 (1319)
T COG5161 1 MN-YLYSDESDWTVTEGCSAGLFTPSRT---------------------------CSLLVYNGNILAVRLWKYDS----- 47 (1319)
T ss_pred Cc-chhhhhhHHHHhhccccceeecccc---------------------------ceEEEEeccEEEEEEeeccC-----
Confidence 44 5788899999999999999999887 99999999999999998876
Q ss_pred ccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEee
Q 001853 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH 160 (1004)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh 160 (1004)
+|.++.++.++|.|++|....-..+ .+|.|++.|..||+++++||.+.+.|.|+|+|
T Consensus 48 -------------------~l~l~de~~~~e~~t~I~~~pq~~s----e~~~lll~t~~akis~lrf~sq~n~f~Tislh 104 (1319)
T COG5161 48 -------------------GLVLVDEHMLLEKVTQIEKYPQISS----EQDGLLLLTHRAKISLLRFDSQANEFRTISLH 104 (1319)
T ss_pred -------------------CeeEchHHhhhhhhhhhhhcccccC----ccceEEEEeccceEEEEEehhhcccceeEEEe
Confidence 7999999999999999999988888 89999999999999999999999999999999
Q ss_pred eecCcchhcccCCc-ccccCCCeEEECCCCCEEEEEEecCeEEEEEcccCCC--CCCCCCCCCCC--------------C
Q 001853 161 CFESPEWLHLKRGR-ESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGS--GLVGDEDTFGS--------------G 223 (1004)
Q Consensus 161 ~~E~~~~~~~k~g~-~~~~~~~~l~VDP~~Rca~l~~~~~~L~ilP~~~~~~--~l~~~d~~~~~--------------~ 223 (1004)
|||... |.-. ........++-||++-|+ |+++++..+++||+-+.. ++++.|.++.. |
T Consensus 105 yyeGKf----kgksLvelak~stle~D~~ssca-LlfneDi~~flpfhvnkndddev~~d~D~~~~~~~~~h~~i~psqg 179 (1319)
T COG5161 105 YYEGKF----KGKSLVELAKFSTLEFDIRSSCA-LLFNEDIGNFLPFHVNKNDDDEVRIDVDLGMFQMSKRHFSIFPSQG 179 (1319)
T ss_pred eecccc----CCchhhhhhhhhheeeccCccch-hhhhhhhhhcccccccCCccccccccccccHHHHHHHHhhcCCCCC
Confidence 998862 2211 223445679999999887 688899999999974332 22222211100 0
Q ss_pred C----------CcccceeeeEEEEecccC--CCceeeEEEecCCCCceEEEEEEccCCcccceeeeeeeEEEEEEeeccc
Q 001853 224 G----------GFSARIESSHVINLRDLD--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTT 291 (1004)
Q Consensus 224 ~----------~~~~~~~~s~~i~l~~ld--i~nViD~~FL~gy~ePtlaiLye~~~tw~gr~~~r~dt~~~~~~sLn~~ 291 (1004)
. -...--.||+++..++|| |.||+|++||++|++||+|+||+|.++|++....+|+++.+.+++||+.
T Consensus 180 tntfnkrkrt~~~~kfsaPs~Vl~~seld~~ikniiD~~FL~ny~~PTvallY~Pkl~~~~~~ti~k~p~~~~v~Tldl~ 259 (1319)
T COG5161 180 TNTFNKRKRTLFPGKFSAPSKVLKFSELDGKIKNIIDFVFLENYSIPTVALLYDPKLSLPRKYTILKNPYNAIVFTLDLG 259 (1319)
T ss_pred ccccchhhhhhcCCcccCceeEEEehhhhccccccEEEEeeccCCCceEEEEecccccccceeEeecCceeEEEEEEecC
Confidence 0 001112579999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeccCCCCCcEEEEecCCCCeEEEEecCeEEEEeCCC-ceeEeecccccccCCCc-CCCCC--ccEEEecce
Q 001853 292 LKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQ-ELPRS--SFSVELDAA 367 (1004)
Q Consensus 292 ~k~~~~i~s~~~LP~d~~~lipvP~plGGvLVig~n~Iiy~dq~~-~~~v~vN~~~~~~t~~~-~~~~~--~~~i~l~~~ 367 (1004)
++++.+|-.+..||+|.+..+|+|. |+|++|.|+++|+|..| .+++.+|.++...+.++ +.+++ ++++.+.|.
T Consensus 260 ~~~saVI~~~~~lP~d~~~~v~~p~---Gall~g~neli~idstg~~~~I~lNs~~~k~~~~~~v~d~s~~d~n~~~~gt 336 (1319)
T COG5161 260 AGRSAVIDEFLVLPRDFRVTVAGPV---GALLFGSNELILIDSTGSSYTIPLNSMSEKYGGNKIVEDISLSDVNCFSRGT 336 (1319)
T ss_pred cchhhhhHhHhcCCceEEEEEeccc---ceEEEecccEEEEecCCcEEEeechhhHHHhcCCceEeecccceeeEeecCc
Confidence 9999999999999999999999985 99999999999999999 78999999999988887 55666 567777887
Q ss_pred eEEEeeC-----CEEEEEeCCCCEEEEEEEECCceEeEEEEEec---C----CCcccceEEEEcCCeEEEEeeeCCeeEE
Q 001853 368 HATWLQN-----DVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT---N----PSVLTSDITTIGNSLFFLGSRLGDSLLV 435 (1004)
Q Consensus 368 ~~~~l~~-----~~~Ll~~~~G~L~~L~l~~dgr~V~~l~l~~~---g----~~~~~S~l~~l~~g~lFvGS~~GDS~Ll 435 (1004)
...|+-. +.+++++-+|+.|.|.+.+||++|.++.+..+ + ..+-++|+..+++.++|+|+..+||.++
T Consensus 337 tsIwipsSK~~~etl~l~dl~g~~yyl~~~~dgk~iigfdi~~L~~e~dllk~~s~~~Cv~~~n~~l~f~g~g~~ns~vl 416 (1319)
T COG5161 337 TSIWIPSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVSCVGHVNNLLFFGGVGDSNSRVL 416 (1319)
T ss_pred eeeeccCcccccceEEEEecCCCEEEEEEEeccceeeccceeeeeeeccccccCCCCeeEEEcCceEEEEEecCCceEEE
Confidence 7777744 46899999999999999999999999777654 2 5688999999999999999999999999
Q ss_pred EEeeCCCcccccCCCccccCCcccCCccccccccCCcccccccccccccccccCCCCCcccccceeeEEEeeeecccCCc
Q 001853 436 QFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPL 515 (1004)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ly~~~~~~~~~~~~~~~l~v~Dsl~NigPI 515 (1004)
+|++..+... ...+|....+.+. .+++|||.-+..|-++++...+....+.++|.+++|+.+.|+|||
T Consensus 417 r~~~l~~tiE--tR~~eG~~~l~g~----------nDeEmdD~y~apEn~l~~n~~~~v~~~~~p~d~el~~~l~n~gpi 484 (1319)
T COG5161 417 RIKSLLPTIE--TRASEGVGPLEGG----------NDEEMDDEYSAPENKLFGNKEQEVRRQDEPYDAELFNALSNAGPI 484 (1319)
T ss_pred EecccCCchh--hhhhcCCCcccCC----------ChhhhhhhhcccccccccCcccceeeccCcchhHHhhhhccCCcc
Confidence 9998654321 0111111111100 001111110001112222222222236678899999999999999
Q ss_pred ccccccccccCC------------CCceeccCCceEEE------------EeCCCccEeEEEeecCCCCCCCCccccccc
Q 001853 516 KDFSYGLRINAD------------ASATGISKQSNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAY 571 (1004)
Q Consensus 516 ~D~~vg~~~~~~------------~~~sG~g~~GsL~v------------~~lpg~~~iWtv~~~~~~~~~~~~~~~~~~ 571 (1004)
.||+||+..... +.++|++..|+|.| +.+-++..+|+++.+... .
T Consensus 485 tdfavgkv~v~kglP~pN~g~l~lV~t~G~ds~~~l~V~~ts~~P~I~~~~~fi~~e~vw~~kI~g~l-----------r 553 (1319)
T COG5161 485 TDFAVGKVDVEKGLPIPNIGLLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQKIRGYL-----------R 553 (1319)
T ss_pred cceeeeeccceecCCCCCccceeeEEeccCCCcceEEEEeccccceeeehccccchhheeehhcccee-----------h
Confidence 999999865211 13889999999999 345578999999986421 1
Q ss_pred CcccccEEEEEecCceEEEEecCceeEEecCCCccccCCeEEEEEeCCCcEEEEEecCcEEEEeCC-cceeEEeCCCCCC
Q 001853 572 DDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNS 650 (1004)
Q Consensus 572 ~~~~~~yLilS~~~~T~Vl~~~~~l~ev~~~~~F~~~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~-~~~q~~~~~~~~~ 650 (1004)
....-.|+++|..+.|.||+.++++.+.. ..+|..+..|+.++.++.++++|||||+.+++||.+ ++.+.+.+.
T Consensus 554 ~~~~~~~~~ls~~s~S~If~~~e~f~l~~-~g~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~lR~l~~~~F~---- 628 (1319)
T COG5161 554 CSRALDFYILSRVSDSRIFRWSEEFLLEV-SGEYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDLRMLGRVEFA---- 628 (1319)
T ss_pred hcceeeEEEeecccccceeeccccceeee-cceeeccccEEEeeeccCcceEEEecchHhhhhcccceeeeeEeec----
Confidence 23345799999999999999999999988 899999999999999999999999999999999988 467777773
Q ss_pred CCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCce-EeeecccccccCCCceeEEEEeecCCCCcceecccccc
Q 001853 651 ESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT-VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDA 729 (1004)
Q Consensus 651 e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~-l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~ 729 (1004)
...|++.|++|||+++..+.|.|.+|.+++.+++ +.+..+..+. +-++.++-+ .|.+---.|...
T Consensus 629 -------~~~V~~~Sv~Dp~ilvv~~~g~i~~f~~~ekn~rL~k~dl~~~l~--d~k~~s~v~-~dsN~~g~f~ig---- 694 (1319)
T COG5161 629 -------SRAVEARSVRDPLILVVRDSGKILTFYDREKNMRLFKIDLVTCLA--DAKNKSFVL-SDSNSLGIFDIG---- 694 (1319)
T ss_pred -------eeeeEEEeccCCEEEEEEecCceEEEEehhhhchhccCChHHHHH--hhhhheEec-cCcccccceecc----
Confidence 1249999999999999999999999999998776 4455555554 444443222 221100022100
Q ss_pred cccCccccccCCCCCCCCCCCcEEEE-EEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCc
Q 001853 730 WLSTGVGEAIDGADGGPLDQGDIYSV-VCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSE 808 (1004)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 808 (1004)
....+...+++ .+..+-.+.-..-|.+..+++.++++.+ .+.+....+. ..
T Consensus 695 ---------------~~~Sq~e~~l~~~~~~~~q~~~~~s~~~D~~~e~dg~dQl----te~~~~~tyn---------l~ 746 (1319)
T COG5161 695 ---------------KRISQLEPCLVKGLPYAIQFSPEASPAMDLAGEEDGDDQL----TEISMSLTYN---------LI 746 (1319)
T ss_pred ---------------cchhhhchhhhhcCcccceeccccCcchhhccccccchhh----hhHHHHHHHh---------hh
Confidence 00011112222 2223334344445667777777666532 2211111100 00
Q ss_pred cccCCCCcccccccceEEEEEeecCCCCCCcEEEEEeeCCcEEEEEEEeecCCCCCCCCCCCCccccccccccccccccc
Q 001853 809 EGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLR 888 (1004)
Q Consensus 809 ~~~~~~~~~~~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1004)
. .--..+.|.+++++.||++-..|||+.+...++++.|+.|.+..
T Consensus 747 d-------~~f~lpsi~~~mVa~lg~D~keeyLf~~s~~~EI~~yk~~l~r~---------------------------- 791 (1319)
T COG5161 747 D-------MLFRLPSIGNYMVAYLGLDLKEEYLFDNSLSSEIVFYKTHLPRH---------------------------- 791 (1319)
T ss_pred h-------hhccChhhhhhhhHhhcccccchheehhhcCceEEEEeeccccc----------------------------
Confidence 0 01134578999999999999899999999999999999995332
Q ss_pred ceeEEec------cCCcCCCCCCCC--CCCccceEEecccCCceEEEecCCCCeEE-EEcccccEEEeccCCCceEEEec
Q 001853 889 NLRFSRT------PLDAYTREETPH--GAPCQRITIFKNISGHQGFFLSGSRPCWC-MVFRERLRVHPQLCDGSIVAFTV 959 (1004)
Q Consensus 889 ~lrf~Kv------~~~~~~~~~~~~--~~~~~~l~~f~~i~g~sgVFv~G~~P~~i-~~~~~~l~~~~~~~~~~v~~f~~ 959 (1004)
.+|-|= .+...|+..+.+ +...+-...|+...||+.||+||..|++| ...++...+.+. ++-|+.+.+|
T Consensus 792 -~~f~~nvTRndlAitGaPdna~~Ka~sSV~ri~m~f~~~vghs~~fvTg~~pfl~~s~~~s~~k~f~~-gNIPlvsv~p 869 (1319)
T COG5161 792 -VSFNLNVTRNDLAITGAPDNADIKAFSSVGRIDMVFIKAVGHSFMFVTGKGPFLCRSRYTSSSKAFHR-GNIPLVSVIP 869 (1319)
T ss_pred -chhhhhcchhhhhccCCCcchhhhhcccccceeEEEeeccCeEEEEEcCCccEEEEEeccCCcceeec-CCCceeeeee
Confidence 222221 111122221111 24455678899999999999999999999 788888888887 4779999999
Q ss_pred CCCCCCCCcEEEEecCCcEEEEECCCCCccc-cCccceEEeee
Q 001853 960 LHNVNCNHGFIYVTSQGILKICQLPSGSTYD-NYWPVQKVVFF 1001 (1004)
Q Consensus 960 F~~~~~~~gfiy~~~~~~lri~~lp~~~~~d-~~wp~rkvpl~ 1001 (1004)
||- +|++|+++...+|+|++-.+..|+ |-||++|+|+.
T Consensus 870 ~s~----rgy~~Vd~~~~vr~~~~~~dn~y~gnK~p~k~~~~~ 908 (1319)
T COG5161 870 LSK----RGYLMVDNVLGVRASQYVFDNGYVGNKNPVKRTPKH 908 (1319)
T ss_pred ccc----ccEEEEecccceeEEEEEeccceecccCceeecccc
Confidence 996 999999998779999999999998 99999999986
No 4
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=1.4e-68 Score=625.14 Aligned_cols=737 Identities=20% Similarity=0.315 Sum_probs=571.9
Q ss_pred hhhhhhccCCCceeeEEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCeEEEEcCCEEEEEEEEec-ccccccc
Q 001853 3 FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQ-EEGSKES 81 (1004)
Q Consensus 3 ~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~-~~~~~~~ 81 (1004)
|.|..+++.||+|.||++|+|.+++. +++|+++++.|++|++.++ |
T Consensus 2 ~lysltlq~~t~i~~~~~g~fs~~k~---------------------------qeIv~~~~s~l~L~~~d~~~G------ 48 (1205)
T KOG1898|consen 2 FLYSLTLQNQTGIVQAIYGNFSGPKA---------------------------QEIVLGRGSILELYRIDENDG------ 48 (1205)
T ss_pred chhhhhhhcccceeeeehhhccCCch---------------------------heEEEEeeeEEEEEEecCCCc------
Confidence 56788899999999999999999987 8999999999999999865 3
Q ss_pred cCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEeee
Q 001853 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1004)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh~ 161 (1004)
||+.++++.+||+|++|+.+|..+. .+|+|+|++|+++++|++|+.+++.++++..|.
T Consensus 49 ------------------~l~~i~~~~vFg~Irsla~~~lt~~----~kD~LaV~SDSGri~il~y~~ek~~~~~~~qet 106 (1205)
T KOG1898|consen 49 ------------------RLKTICRQEVFGTIRSLAAFRLTGG----TKDYLAVGSDSGRISILEYNNEKNHFEKLHQET 106 (1205)
T ss_pred ------------------eEEEEEEEeehhhhhhhhccccCCC----CccEEEEEcCCceEEEEEechhhhccccccccc
Confidence 8999999999999999999999998 999999999999999999999999999886666
Q ss_pred ecCcchhcccCCcccccCCCeEEECCCCCEEEEEEe-cCeEEEEEcccCCCCCCCCCCCCCCCCCcccceeeeEEEEecc
Q 001853 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240 (1004)
Q Consensus 162 ~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~-~~~L~ilP~~~~~~~l~~~d~~~~~~~~~~~~~~~s~~i~l~~ 240 (1004)
| +|+|+|+..++.|+.+||.|||+++++. +++|+++-.+... ..+..++++++....+.++.+..
T Consensus 107 f-------Gks~~rrivpG~y~~idp~Gra~misave~~kLvyvlnrD~~-------a~ltisSpleahk~~sic~~l~~ 172 (1205)
T KOG1898|consen 107 F-------GKSGCRRIVPGQYLAIDPKGRAVMISAVEKQKLVYVLNRDGA-------ARLTISSPLEAHKAHSICLDLVG 172 (1205)
T ss_pred c-------CcccceEeccccEEEEcCCccceeeehhhcCcEEEEEccchh-------hhceecCchhhccCCcEEEEEEE
Confidence 6 8999999999999999999999999987 9999998776543 24445678888888999999999
Q ss_pred cCCCceeeEEEecCCCCceEEEEEEcc----CCcccce---eeeeeeEEEEEEeeccccccccceeeeccCCCCCcEEEE
Q 001853 241 LDMKHVKDFIFVHGYIEPVMVILHERE----LTWAGRV---SWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLA 313 (1004)
Q Consensus 241 ldi~nViD~~FL~gy~ePtlaiLye~~----~tw~gr~---~~r~dt~~~~~~sLn~~~k~~~~i~s~~~LP~d~~~lip 313 (1004)
+|. ||.||+||.|+-+. ...+|.. ..+..++|..+++||++.|+ |+ .-+....+.+++
T Consensus 173 Vd~----------gf~np~fa~LE~dy~~a~~d~tgeaa~~~~~~l~fYeldlglnhvvrk----~s-~p~~~~~n~l~~ 237 (1205)
T KOG1898|consen 173 VDV----------GFENPIFAALERDYSEADNDPTGEAATMTQKVLTFYELDLGLNHVVRK----AS-EPVNHFGNFLLT 237 (1205)
T ss_pred Eec----------cCCCceEEEEeechhhcccCchhhhhhccccceeEEEEecccceeEEE----cc-cccCCCceEEEE
Confidence 888 99999999999762 1122322 25778999999999999998 77 346677999999
Q ss_pred ecCC---CCeEEEEecCeEEEEeCCC--ceeEeecccccccCCCcCCCCCccEEEecceeEEEeeCCEEEEEeCCCCEEE
Q 001853 314 VPSP---IGGVLVVGANTIHYHSQSA--SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVL 388 (1004)
Q Consensus 314 vP~p---lGGvLVig~n~Iiy~dq~~--~~~v~vN~~~~~~t~~~~~~~~~~~i~l~~~~~~~l~~~~~Ll~~~~G~L~~ 388 (1004)
||.. ..||+|++.|++.|.+..- .+.++. +++.+..+. ..+.+-+. .+......+..++|+++++||+|+
T Consensus 238 VP~G~D~ps~v~vc~~n~~~y~~~~d~p~~ri~~---~rr~~~L~~-~~~~vliv-~s~~hk~k~~ff~llqt~~GD~fk 312 (1205)
T KOG1898|consen 238 VPGGSDGPSGVLVCAENYLLYRNLGDHPDVRIPI---ERRINELSD-AEDGVLIV-SSAEHKTKSMFFFLLQTEYGDLFK 312 (1205)
T ss_pred ecCCCCCCcceEEecCceeeccccccCCCEEecc---ccccccCCc-cccccEEE-EeecccccCCeEEEEEecCCceEE
Confidence 9975 3499999999999999873 345533 555432221 12233221 222222334459999999999999
Q ss_pred EEEEECCceEeEEEEEecCCCcccceEEEEcCCeEEEEeeeCCeeEEEEeeCCCcccccCCCccccCCcccCCccccccc
Q 001853 389 LTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLR 468 (1004)
Q Consensus 389 L~l~~dgr~V~~l~l~~~g~~~~~S~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1004)
++|..|+..|..+++.|+++.+.+..|+++++|+||+.|++||..|||+... |++++ +..+
T Consensus 313 ~tl~~d~d~v~el~lkYfDtvp~a~~L~I~k~GfLf~~sE~~n~~lyq~~~L--------G~~~~--~~s~--------- 373 (1205)
T KOG1898|consen 313 LTLEHDGDNVVELRLKYFDTVPCALQLCILKTGFLFVASEFGNHRLYQFEKL--------GEEDD--DFSN--------- 373 (1205)
T ss_pred EEEecCCCcceeeeeehhcCCccceEEEEeccceEEEhhhccCcceeehhhc--------CCCcc--chhh---------
Confidence 9999999999999999999999999999999999999999999999999875 32211 1110
Q ss_pred cCCcccccccccccccccccCCCCCcccccceeeEEEeeeecccCCcccccccccccCCC----CceeccCCceEEE---
Q 001853 469 RSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYEL--- 541 (1004)
Q Consensus 469 ~~~~~~~~~~~d~~~~~ly~~~~~~~~~~~~~~~l~v~Dsl~NigPI~D~~vg~~~~~~~----~~sG~g~~GsL~v--- 541 (1004)
+|+- ++. ..++ ++|+.. + +|..++++.|+.|+.|+.+|+..+.+. .|||+|.+++|++
T Consensus 374 -----~~~~-~~~--~~~~-f~p~~l----~--nL~~~~~i~sl~p~~d~~I~~~~ne~~~qi~~~cg~~~~sslr~lR~ 438 (1205)
T KOG1898|consen 374 -----AMTS-EEG--KSVF-FEPRIL----K--NLSPVSSVESLSPLLDISIGDDSNEDTPQIYSACGRGPRSSLRILRN 438 (1205)
T ss_pred -----hccc-ccC--ccee-cccccc----c--cccchhhhhccCccceeEeeccCcccchhhhhhhCcCccccchhhcc
Confidence 1110 011 1222 334432 2 688899999999999999998665442 3999999999998
Q ss_pred ---------EeCCC-ccEeEEEeecCCCCCCCCcccccccCcccccEEEEEecCceEEEEecCceeEEecCCCccccCCe
Q 001853 542 ---------VELPG-CKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRT 611 (1004)
Q Consensus 542 ---------~~lpg-~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~~~~l~ev~~~~~F~~~~~T 611 (1004)
.+||+ ++++||++.+ ..+.||.||++||.+.|+||++|+.+||++ ++||..+.+|
T Consensus 439 gle~sel~~t~lp~~~ta~WTvk~~--------------~td~ydsyivvsF~n~TlVLsIgesveEvt-dsgFls~~~T 503 (1205)
T KOG1898|consen 439 GLEVSELLVTELPGNPTATWTVKKN--------------ITDVYDSYIVVSFVNGTLVLSIGESVEEVT-DSGFLSTTPT 503 (1205)
T ss_pred ccchHHHhhhccCCCCceEEEEcCc--------------cccccceEEEEEeeccEEEEEcchhHHHhh-hcccccCCce
Confidence 25787 9999999863 467899999999999999999999999999 9999999999
Q ss_pred EEEEEeCCCcEEEEEecCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCce
Q 001853 612 IAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT 691 (1004)
Q Consensus 612 I~ag~l~~~~~IvQVt~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~ 691 (1004)
|+|+.||++ .+|||++.+||++-..+++.+|.+| ++.+|+.+.++..+|++++++|+++||++|.++++
T Consensus 504 l~~~l~Gd~-slVQi~~d~iRhi~~~~r~~ew~~P----------~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql 572 (1205)
T KOG1898|consen 504 LACSLMGDD-SLVQIHPDGIRHIRPTKRINEWKTP----------ERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQL 572 (1205)
T ss_pred EEEEEecCC-cEEEEchhhhhhcccccccccccCC----------CceEEEEEeecceEEEEEccCCeEEEEEeccCccc
Confidence 999999999 8999999999999988888889875 46889999999999999999999999999988887
Q ss_pred Eeee-cccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCC
Q 001853 692 VSVQ-TPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1004)
Q Consensus 692 l~~~-~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~ 770 (1004)
.|.. ++.+ +..+++.++-.+.-| .+.+-+|.+...++.++|++|.-
T Consensus 573 ~E~~er~tl----~~~vac~ai~~~~~g-----------------------------~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 573 NEFTERVTL----STDVACLAIGQDPEG-----------------------------EKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eeeeeeeee----ceeehhhccCCCCcc-----------------------------hhhcceeeeeccccceeEEEecC
Confidence 7764 4433 334554444333322 23455899999999999999863
Q ss_pred CeE--EEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceEEEEEeecCCCCC----CcEEEEE
Q 001853 771 FNC--VFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHS----RPFLFAI 844 (1004)
Q Consensus 771 ~~~--v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill~~lg~~~~----~p~L~v~ 844 (1004)
-.+ .++..+++ ..+..+++..+..... .=||.+.
T Consensus 620 ~d~l~~ls~q~l~----------------------------------------~~~~s~~iv~~~~~~~~~~~~L~l~~G 659 (1205)
T KOG1898|consen 620 SDCLQPLSVQGLS----------------------------------------SPPESLCIVEMEATGGTDVAQLYLLIG 659 (1205)
T ss_pred cceEEEccccccC----------------------------------------CCccceEEEEecccCCccceeEEEEec
Confidence 222 22211111 1234466666654432 5788888
Q ss_pred eeCCcEEEEEEEeecCCCCCCCCCCCCcccccccccccccccccceeEEeccCCcCCCCCCCCCCCccceEEecccCCce
Q 001853 845 LTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQ 924 (1004)
Q Consensus 845 ~~~g~l~iY~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrf~Kv~~~~~~~~~~~~~~~~~~l~~f~~i~g~s 924 (1004)
+.+|-++=+.. +.. .| ..+.+|=++ .|.++..|.+|. ..|-+
T Consensus 660 L~NGvllR~~i---d~v------------~G----------~l~d~rtR~------------lG~~pvkLf~~~-~~~~s 701 (1205)
T KOG1898|consen 660 LRNGVLLRFVI---DTV------------TG----------QLLDIRTRF------------LGLRPVKLFPIS-MRGQS 701 (1205)
T ss_pred ccccEEEEEEe---ccc------------cc----------ceeeeheee------------eccccceEEEEe-ecCcc
Confidence 88886654432 221 11 112222222 345566677774 57888
Q ss_pred EEEecCCCCeEEEEcccccEEEeccCCCceEEEecCCCCCCCCcEEEEecCCcEEEEECCCC-Ccc-ccCccceEEeee
Q 001853 925 GFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSG-STY-DNYWPVQKVVFF 1001 (1004)
Q Consensus 925 gVFv~G~~P~~i~~~~~~l~~~~~~~~~~v~~f~~F~~~~~~~gfiy~~~~~~lri~~lp~~-~~~-d~~wp~rkvpl~ 1001 (1004)
.|....++|-.+++.+.++++.|..-+ +..-.+||-+..||.|..+.... .+||-++... ..+ .-.||.+--|.+
T Consensus 702 ~vL~lSsr~wl~y~~~~~~h~t~Isy~-~l~~as~~~S~qcpeGiv~i~~n-~l~i~~~~~~g~~~n~~~~~l~~tprk 778 (1205)
T KOG1898|consen 702 DVLALSSRPWLLYTYQQEFHLTPISYS-TLEHASPFCSEQCPEGIVAISKN-TLRIIALDKLGKVLNVDGFPLAYTPRK 778 (1205)
T ss_pred eeEEecCChhhhhhhcceeeeeccccc-chhccccccccCCCcchhhhhhh-hhheeeehhhcccccccccccccCcce
Confidence 888888888666999999999999777 78899999999999998877666 7999888765 333 344555544443
No 5
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=100.00 E-value=2.4e-55 Score=524.97 Aligned_cols=434 Identities=29% Similarity=0.450 Sum_probs=299.4
Q ss_pred cEEEEEECCCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCCeEEECCCCCEEEEEEecCeEEEEEcccCC
Q 001853 131 DSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGG 210 (1004)
Q Consensus 131 D~Llv~~~~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~~~~L~ilP~~~~~ 210 (1004)
|+|+|+|+++|+++|+||++++++.+.+.|+++.- .++|.|+..++++++|||.|||+|+.+|++.+.|+|+.+..
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~----~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~ 76 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPL----SKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSL 76 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE-------SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS--
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEec----CCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccc
Confidence 79999999999999999999998866566776443 57888999999999999999999999999999999998711
Q ss_pred CCCCCCCCCCCCCCCcccceeeeEEEEecccCCCceeeEEEec---CCCCceEEEEEEccCCcccceeeeeeeEEE--EE
Q 001853 211 SGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVH---GYIEPVMVILHERELTWAGRVSWKHHTCMI--SA 285 (1004)
Q Consensus 211 ~~l~~~d~~~~~~~~~~~~~~~s~~i~l~~ldi~nViD~~FL~---gy~ePtlaiLye~~~tw~gr~~~r~dt~~~--~~ 285 (1004)
. ... .....+..++.+ ..+|+|||||| ||++|+||+||.+.+.|. +..++. ..
T Consensus 77 -~-----~~~--------~~~~~~~~pi~s--~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~------~~~~y~w~~~ 134 (504)
T PF10433_consen 77 -D-----SDI--------AFSPHINSPIKS--EGNILDMCFLHPSVGYDNPTLAILYVDSQRRT------HLVTYEWSLD 134 (504)
T ss_dssp --------T---------TT---EEEE--S---SEEEEEEEES---S-SS-EEEEEEEETT-EE------EEEEEE----
T ss_pred -c-----ccc--------cccccccccccC--CceEEEEEEEecccCCCCceEEEEEEEecccc------eeEEEeeecc
Confidence 0 000 011222223311 49999999999 999999999999976522 222332 33
Q ss_pred Eeecccccccc-c--eeeeccCCCCCcEEEEecCCCCeEEEEecCeEEEEeCCCc----eeEeecccccccCCCcCCCCC
Q 001853 286 LSISTTLKQHP-L--IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSAS----CALALNNYAVSLDSSQELPRS 358 (1004)
Q Consensus 286 ~sLn~~~k~~~-~--i~s~~~LP~d~~~lipvP~plGGvLVig~n~Iiy~dq~~~----~~v~vN~~~~~~t~~~~~~~~ 358 (1004)
..++...++.+ . +|...++| .+|||||.|.||+||++++.++|.++... ...+++..... +.
T Consensus 135 ~~l~~~~~~~~~~~~l~~~~~~p---~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~--------~~ 203 (504)
T PF10433_consen 135 DGLNHVISKSTLPIRLPNEDELP---SFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSS--------SS 203 (504)
T ss_dssp ----EETTTTEEEE--EEEE-TT---EEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H-HH--------HT
T ss_pred cccceeeeeccccccccccCCCc---cEEEEcCCCCcEEEEECCEEEEEecccccccccccccccCCccC--------CC
Confidence 45555544433 2 66767777 99999999999999999999999976432 22222110000 11
Q ss_pred ccEEEecc---eeEEEeeCCEEEEEeCCCCEEEEEEEECCceEeEEEEEecCC-CcccceEEEEcCC--eEEEEeeeCCe
Q 001853 359 SFSVELDA---AHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNP-SVLTSDITTIGNS--LFFLGSRLGDS 432 (1004)
Q Consensus 359 ~~~i~l~~---~~~~~l~~~~~Ll~~~~G~L~~L~l~~dgr~V~~l~l~~~g~-~~~~S~l~~l~~g--~lFvGS~~GDS 432 (1004)
.+.+.... ......+.+++||++++|+||+|.+..+++ ++++.++|+ .+++++++++++| +||+||++|||
T Consensus 204 ~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~---~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds 280 (504)
T PF10433_consen 204 SLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG---SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDS 280 (504)
T ss_dssp S-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE---EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-E
T ss_pred ceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC---eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCc
Confidence 22221000 000233457999999999999999999877 799999999 9999999999999 99999999999
Q ss_pred eEEEEeeCCCcccccCCCccccCCcccCCccccccccCCcccccccccccccccccCCCCCcccccceeeEEEeeeeccc
Q 001853 433 LLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNI 512 (1004)
Q Consensus 433 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ly~~~~~~~~~~~~~~~l~v~Dsl~Ni 512 (1004)
+|+++... .++++|+++|+
T Consensus 281 ~l~~~~~~-------------------------------------------------------------~l~~~~~~~N~ 299 (504)
T PF10433_consen 281 QLLQISLS-------------------------------------------------------------NLEVLDSLPNW 299 (504)
T ss_dssp EEEEEESE-------------------------------------------------------------SEEEEEEE---
T ss_pred EEEEEeCC-------------------------------------------------------------CcEEEEeccCc
Confidence 99998630 48999999999
Q ss_pred CCcccccccccccCC----------CCceeccCCceEEE--------------EeCCCccEeEEEeecCCCCCCCCcccc
Q 001853 513 GPLKDFSYGLRINAD----------ASATGISKQSNYEL--------------VELPGCKGIWTVYHKSSRGHNADSSRM 568 (1004)
Q Consensus 513 gPI~D~~vg~~~~~~----------~~~sG~g~~GsL~v--------------~~lpg~~~iWtv~~~~~~~~~~~~~~~ 568 (1004)
|||.||++++..... .+|||.|++|+|++ .+++++++||+++...
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~----------- 368 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSS----------- 368 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSS-----------
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecC-----------
Confidence 999999998653221 25999999999999 3688999999998531
Q ss_pred cccCcccccEEEEEecCceEEEEec-----CceeEEecCCCccccCCeEEEEEeCCCcEEEEEecCcEEEEeCC--ccee
Q 001853 569 AAYDDEYHAYLIISLEARTMVLETA-----DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS--YMTQ 641 (1004)
Q Consensus 569 ~~~~~~~~~yLilS~~~~T~Vl~~~-----~~l~ev~~~~~F~~~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~--~~~q 641 (1004)
+. |.|||+|+.++|+||+++ ++++|++ ..+|.++++||+||+++++ ++||||+++||+++.. ...+
T Consensus 369 ----~~-~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~-~~~f~~~~~Tl~~~~~~~~-~ivQVt~~~i~l~~~~~~~~~~ 441 (504)
T PF10433_consen 369 ----SD-HSYLVLSFPNETRVLQISEGDDGEEVEEVE-EDGFDTDEPTLAAGNVGDG-RIVQVTPKGIRLIDLEDGKLTQ 441 (504)
T ss_dssp ----SS-BSEEEEEESSEEEEEEES----SSEEEEE----TS-SSS-EEEEEEETTT-EEEEEESSEEEEEESSSTSEEE
T ss_pred ----CC-ceEEEEEcCCceEEEEEecccCCcchhhhh-hccCCCCCCCeEEEEcCCC-eEEEEecCeEEEEECCCCeEEE
Confidence 12 999999999999999984 5677775 4499999999999999966 9999999999999844 4577
Q ss_pred EEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEe
Q 001853 642 DLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVS 693 (1004)
Q Consensus 642 ~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~ 693 (1004)
.|.++ .+..|++|+++++|++|++.++.+.+|+++......+
T Consensus 442 ~w~~~----------~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~ 483 (504)
T PF10433_consen 442 EWKPP----------AGSIIVAASINDPQVLVALSGGELVYFELDDNKISVS 483 (504)
T ss_dssp EEE-T----------TS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred EEeCC----------CCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeee
Confidence 89874 2467999999999999999999999999998755444
No 6
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.32 E-value=8.9 Score=44.94 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=50.4
Q ss_pred EEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceEEEEEeec
Q 001853 753 YSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRW 832 (1004)
Q Consensus 753 ~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill~~l 832 (1004)
++++..++|.|.|+.+-.-.++|. +++.. ..+ . +........-|-.+..+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~-~~i~~--~~~---------~------------------~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYN-ENIRE--SFL---------S------------------KSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEE-EEGGG----T----------------------------SS----EEEEEEEEEE-
T ss_pred EEEEEecCCcEEEEECCCCeEEee-ccccc--ccc---------c------------------cccccCeeEEEEEEEec
Confidence 677888999999999988888888 54442 000 0 00011122345556667
Q ss_pred CCCC-CCcEEEEEeeCCcEEEEEEEe
Q 001853 833 SAHH-SRPFLFAILTDGTILCYQAYL 857 (1004)
Q Consensus 833 g~~~-~~p~L~v~~~~g~l~iY~~f~ 857 (1004)
|++. +.|.|+|.+..|++++|+..+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEec
Confidence 7654 679999999999999999975
No 7
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=90.08 E-value=4.4 Score=43.62 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=79.7
Q ss_pred cccCCeEEEEEeCCCc--EEEEEecCcEEEEeCCc-ceeEEeCCCCC-CC--CCCCCCCccEEEEEEcCCEEEEEEeCCe
Q 001853 606 FVQGRTIAAGNLFGRR--RVIQVFERGARILDGSY-MTQDLSFGPSN-SE--SGSGSENSTVLSVSIADPYVLLGMSDGS 679 (1004)
Q Consensus 606 ~~~~~TI~ag~l~~~~--~IvQVt~~~vrl~~~~~-~~q~~~~~~~~-~e--~g~~~~~~~I~~As~~dpyvll~~~~g~ 679 (1004)
..+.|-|++..-.-.+ .|--+-..++|+||-.+ +.|.+++...+ .| -|.+..|..|.-|...|.+ ...
T Consensus 52 aADDPAIwVh~t~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~------~~~ 125 (364)
T COG4247 52 AADDPAIWVHATNPDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQ------NDK 125 (364)
T ss_pred ccCCcceEeccCCcCcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEeccccc------CCe
Confidence 3566777777654332 34445577899999764 56666543222 12 1222234456655555543 789
Q ss_pred EEEEEecCCCceEeee-ccc-ccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEE
Q 001853 680 IRLLVGDPSTCTVSVQ-TPA-AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVC 757 (1004)
Q Consensus 680 I~~l~~d~~~~~l~~~-~~~-~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (1004)
|.+|.+|++...|+-. .+. ...+..+..-.+|||++. ....+++|+.
T Consensus 126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~-------------------------------ktgd~yvfV~ 174 (364)
T COG4247 126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSP-------------------------------KTGDYYVFVN 174 (364)
T ss_pred EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecC-------------------------------CcCcEEEEEe
Confidence 9999999988777733 221 111113445678898875 3357899999
Q ss_pred ecCCeEEEEEcCC
Q 001853 758 YESGALEIFDVPN 770 (1004)
Q Consensus 758 ~~~g~l~I~sLp~ 770 (1004)
+..|.++=|+|-+
T Consensus 175 ~~qG~~~Qy~l~d 187 (364)
T COG4247 175 RRQGDIAQYKLID 187 (364)
T ss_pred cCCCceeEEEEEe
Confidence 9999999888754
No 8
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.06 E-value=31 Score=40.70 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=54.1
Q ss_pred ceEEecccCCceEEEecCCCCeEEEEcccccEEEeccCCCceEEEecCCC--CCCCC---cEEEEecCCcEEEEE
Q 001853 913 RITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHN--VNCNH---GFIYVTSQGILKICQ 982 (1004)
Q Consensus 913 ~l~~f~~i~g~sgVFv~G~~P~~i~~~~~~l~~~~~~~~~~v~~f~~F~~--~~~~~---gfiy~~~~~~lri~~ 982 (1004)
.+.....-+.-+.|+|-|+|-.+.....|.+++-.. .|..-.||++|.. .+-++ -+|+.|+++.|.|-+
T Consensus 243 ~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 243 DIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred EEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 344443334778999999999999999999999864 7889999999998 44443 299999999887754
No 9
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.76 E-value=16 Score=40.65 Aligned_cols=81 Identities=14% Similarity=0.274 Sum_probs=60.6
Q ss_pred ccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccc
Q 001853 659 STVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1004)
Q Consensus 659 ~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~ 738 (1004)
..|++.+++.||++=..+|.+|.+|.+..... +. ..+. ....|+|+..|.+.+
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~q-lg----~ll~-HagsitaL~F~~~~S--------------------- 96 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQ-LG----ILLS-HAGSITALKFYPPLS--------------------- 96 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhh-hc----ceec-cccceEEEEecCCcc---------------------
Confidence 34999999999999999999999999876422 11 1111 155688776654432
Q ss_pred cCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEec
Q 001853 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1004)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~ 778 (1004)
.-||+-+-+||.+.||+..+++++-..+
T Consensus 97 ------------~shLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 97 ------------KSHLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred ------------hhheeeecCCCcEEEEEcCCeEEeeeec
Confidence 1289999999999999999998877654
No 10
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.34 E-value=87 Score=37.06 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=60.3
Q ss_pred CeEEEEcCCEEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEE
Q 001853 56 PNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIIL 135 (1004)
Q Consensus 56 ~nLVvak~n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv 135 (1004)
..|.|--.+.|.||.+...+.. ... .+..+|+++.++.+.-+.-+|..-+..+.. ++|.|.|
T Consensus 89 ~~LaVLhP~kl~vY~v~~~~g~---------~~~------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~---~~~~IcV 150 (418)
T PF14727_consen 89 LQLAVLHPRKLSVYSVSLVDGT---------VEH------GNQYQLELIYEHSLQRTAYNMCCGPFGGVK---GRDFICV 150 (418)
T ss_pred ceEEEecCCEEEEEEEEecCCC---------ccc------CcEEEEEEEEEEecccceeEEEEEECCCCC---CceEEEE
Confidence 6899999999999999643210 000 112479999999999999999999988872 4999999
Q ss_pred EECCCeEEEEEEeC
Q 001853 136 AFEDAKISVLEFDD 149 (1004)
Q Consensus 136 ~~~~aklsile~d~ 149 (1004)
=+-|++|++.+-|.
T Consensus 151 QS~DG~L~~feqe~ 164 (418)
T PF14727_consen 151 QSMDGSLSFFEQES 164 (418)
T ss_pred EecCceEEEEeCCc
Confidence 99999999997664
No 11
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=84.85 E-value=0.22 Score=60.68 Aligned_cols=90 Identities=16% Similarity=-0.025 Sum_probs=71.8
Q ss_pred cEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccC
Q 001853 100 SLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFAR 179 (1004)
Q Consensus 100 kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~ 179 (1004)
-|++..+.+.|++|. |..++.+.+ + ...++-||++.+|||+.. +-++||+|+-. --..+ ....
T Consensus 88 ~lrf~sq~n~f~Tis-lhyyeGKfk----g----ksLvelak~stle~D~~s----scaLlfneDi~---~flpf-hvnk 150 (1319)
T COG5161 88 LLRFDSQANEFRTIS-LHYYEGKFK----G----KSLVELAKFSTLEFDIRS----SCALLFNEDIG---NFLPF-HVNK 150 (1319)
T ss_pred EEEehhhcccceeEE-EeeeccccC----C----chhhhhhhhhheeeccCc----cchhhhhhhhh---hcccc-cccC
Confidence 588889999999999 999998877 4 456788999999999986 66889999852 00111 1233
Q ss_pred CCeEEECCCCCEEEEEEecCeEEEEEc
Q 001853 180 GPLVKVDPQGRCGGVLVYGLQMIILKA 206 (1004)
Q Consensus 180 ~~~l~VDP~~Rca~l~~~~~~L~ilP~ 206 (1004)
.....|||+..|.++.+-.++++++|-
T Consensus 151 ndddev~~d~D~~~~~~~~~h~~i~ps 177 (1319)
T COG5161 151 NDDDEVRIDVDLGMFQMSKRHFSIFPS 177 (1319)
T ss_pred CccccccccccccHHHHHHHHhhcCCC
Confidence 557889999999999999999999995
No 12
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=81.80 E-value=1e+02 Score=39.14 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=84.7
Q ss_pred EEEEEecC-ceEEEEecCceeEEecCCCccc-cCCeEEEEEeCCCcEEEEEecCcEEEEeCCc-----ceeEEeCCCCCC
Q 001853 578 YLIISLEA-RTMVLETADLLTEVTESVDYFV-QGRTIAAGNLFGRRRVIQVFERGARILDGSY-----MTQDLSFGPSNS 650 (1004)
Q Consensus 578 yLilS~~~-~T~Vl~~~~~l~ev~~~~~F~~-~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~~-----~~q~~~~~~~~~ 650 (1004)
||+....+ .+++++.....+ .++++. .+.++.+-....+..+.=.-.+-|.+|.-.. .+....++
T Consensus 27 fi~tcgsdg~ir~~~~~sd~e----~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp---- 98 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDEE----EPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP---- 98 (933)
T ss_pred EEEEecCCCceEEeecCCccc----CCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeecc----
Confidence 66666554 466776544332 344543 4444444433333234333344454444221 11122221
Q ss_pred CCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceeccccccc
Q 001853 651 ESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAW 730 (1004)
Q Consensus 651 e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~ 730 (1004)
.+.++.+..+.+++.+.+|-.|.++.++..+....+... +.+++++++ ++
T Consensus 99 --------~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh------~apVl~l~~--~p-------------- 148 (933)
T KOG1274|consen 99 --------IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH------DAPVLQLSY--DP-------------- 148 (933)
T ss_pred --------ceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc------CCceeeeeE--cC--------------
Confidence 334555555679999999999999999876543322211 455775544 22
Q ss_pred ccCccccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcC
Q 001853 731 LSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFV 781 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~ 781 (1004)
...+|++..-||.|.||++.+..+.++..++.
T Consensus 149 -------------------~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 149 -------------------KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred -------------------CCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 23578888999999999999988777655443
No 13
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=80.81 E-value=1.1e+02 Score=34.89 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=49.8
Q ss_pred CccEEEEEEC---CCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCCeEEECCCCCEEEEEEe-cCeEEEE
Q 001853 129 RRDSIILAFE---DAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIIL 204 (1004)
Q Consensus 129 ~~D~Llv~~~---~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~-~~~L~il 204 (1004)
+...|.+.-+ .+.++..+||++.++|.-+. +.. -.| .++-++.+|++||.....-| .+.+.++
T Consensus 50 ~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-~~~--------~~g----~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 50 DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-RQT--------LPG----SPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee-ccc--------cCC----CCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 3445554433 69999999999988875442 221 112 22368999999999999999 8999999
Q ss_pred EcccCC
Q 001853 205 KASQGG 210 (1004)
Q Consensus 205 P~~~~~ 210 (1004)
|+...+
T Consensus 117 p~~~dG 122 (346)
T COG2706 117 PLQADG 122 (346)
T ss_pred EcccCC
Confidence 997654
No 14
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=80.75 E-value=51 Score=31.44 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=59.1
Q ss_pred EEEEecCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeeccccccc
Q 001853 623 VIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIES 702 (1004)
Q Consensus 623 IvQVt~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~ 702 (1004)
+|==....||+++.+..+.++.-. + .-+.-+.+...+.+-++.+|+|.+|+.... +=..+.
T Consensus 19 lvGs~D~~IRvf~~~e~~~Ei~e~------~-----~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R---lWRiKS----- 79 (111)
T PF14783_consen 19 LVGSDDFEIRVFKGDEIVAEITET------D-----KVTSLCSLGGGRFAYALANGTVGVYDRSQR---LWRIKS----- 79 (111)
T ss_pred EEecCCcEEEEEeCCcEEEEEecc------c-----ceEEEEEcCCCEEEEEecCCEEEEEeCcce---eeeecc-----
Confidence 333345678999888766555432 1 235566677888999999999999976432 211111
Q ss_pred CCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCeEEE
Q 001853 703 SKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEI 765 (1004)
Q Consensus 703 ~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I 765 (1004)
+.++.+++.|.- +| ....=|++.|.||.+++
T Consensus 80 -K~~~~~~~~~D~-~g------------------------------dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 80 -KNQVTSMAFYDI-NG------------------------------DGVPELIVGWSNGKVEV 110 (111)
T ss_pred -CCCeEEEEEEcC-CC------------------------------CCceEEEEEecCCeEEe
Confidence 455777776632 22 12345899999999986
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=78.29 E-value=1e+02 Score=38.79 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=57.1
Q ss_pred EEEEEE--cCCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccc
Q 001853 661 VLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1004)
Q Consensus 661 I~~As~--~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~ 738 (1004)
|+++.- +=..|+|.+.+|+|++|.+..+....+.. .+ ..+|+++++-.|
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d-----~g~VtslSFrtD----------------------- 255 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QD-----WGRVTSLSFRTD----------------------- 255 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-cc-----ccceeEEEeccC-----------------------
Confidence 554443 24577889999999999997764333322 11 356888775322
Q ss_pred cCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcC
Q 001853 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFV 781 (1004)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~ 781 (1004)
+...++..+.+|.|.||.|.+-+++.++.+..
T Consensus 256 -----------G~p~las~~~~G~m~~wDLe~kkl~~v~~nah 287 (910)
T KOG1539|consen 256 -----------GNPLLASGRSNGDMAFWDLEKKKLINVTRNAH 287 (910)
T ss_pred -----------CCeeEEeccCCceEEEEEcCCCeeeeeeeccc
Confidence 24678889999999999999988888776554
No 16
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=77.41 E-value=1e+02 Score=33.37 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=44.0
Q ss_pred cCCEEEEEEeCCeEEEEEecCCCc--eEeee-cccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCC
Q 001853 667 ADPYVLLGMSDGSIRLLVGDPSTC--TVSVQ-TPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGAD 743 (1004)
Q Consensus 667 ~dpyvll~~~~g~I~~l~~d~~~~--~l~~~-~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~ 743 (1004)
..++|+-..+||++.++......+ .|+.. .+..+.+.-++|. +||..
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi-gala~----------------------------- 216 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI-GALAV----------------------------- 216 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee-EEEec-----------------------------
Confidence 488999999999999998865432 23322 2222221122222 23311
Q ss_pred CCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEE
Q 001853 744 GGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 744 ~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
...|+ +|...-.+.+|.||..+++..
T Consensus 217 ------~edWl-vCGgGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 217 ------NEDWL-VCGGGPKLSLWHLRSSESTCV 242 (325)
T ss_pred ------cCceE-EecCCCceeEEeccCCCceEE
Confidence 13475 456677899999999777555
No 17
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=73.86 E-value=19 Score=40.65 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=57.1
Q ss_pred CeEEEEcCCEEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEE
Q 001853 56 PNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIIL 135 (1004)
Q Consensus 56 ~nLVvak~n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv 135 (1004)
..||+|-++.|.||++..+. +|..++.+...-.|++|..+ .+.|+|
T Consensus 99 ~~lv~~~g~~l~v~~l~~~~------------------------~l~~~~~~~~~~~i~sl~~~----------~~~I~v 144 (321)
T PF03178_consen 99 GRLVVAVGNKLYVYDLDNSK------------------------TLLKKAFYDSPFYITSLSVF----------KNYILV 144 (321)
T ss_dssp TEEEEEETTEEEEEEEETTS------------------------SEEEEEEE-BSSSEEEEEEE----------TTEEEE
T ss_pred CEEEEeecCEEEEEEccCcc------------------------cchhhheecceEEEEEEecc----------ccEEEE
Confidence 56999999999999997542 39999999998899999885 369999
Q ss_pred EECCCeEEEEEEeCCCCcEEEEE
Q 001853 136 AFEDAKISVLEFDDSIHGLRITS 158 (1004)
Q Consensus 136 ~~~~aklsile~d~~~~~l~TvS 158 (1004)
+.-..-+++++|+.+.++|.-++
T Consensus 145 gD~~~sv~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 145 GDAMKSVSLLRYDEENNKLILVA 167 (321)
T ss_dssp EESSSSEEEEEEETTTE-EEEEE
T ss_pred EEcccCEEEEEEEccCCEEEEEE
Confidence 99999999999999777787665
No 18
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.30 E-value=1.9e+02 Score=32.55 Aligned_cols=95 Identities=14% Similarity=0.244 Sum_probs=63.5
Q ss_pred CCEEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeE
Q 001853 63 ANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKI 142 (1004)
Q Consensus 63 ~n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~akl 142 (1004)
..+|.||++.... .|.-+..+ .|.|+.|+-..+.. ...||=+.+|+++
T Consensus 62 DetI~IYDm~k~~------------------------qlg~ll~H--agsitaL~F~~~~S------~shLlS~sdDG~i 109 (362)
T KOG0294|consen 62 DETIHIYDMRKRK------------------------QLGILLSH--AGSITALKFYPPLS------KSHLLSGSDDGHI 109 (362)
T ss_pred CCcEEEEeccchh------------------------hhcceecc--ccceEEEEecCCcc------hhheeeecCCCcE
Confidence 4589999987532 24445554 79999988666553 3499999999999
Q ss_pred EEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCCeEEECCCCCEEEEEEe-cCeEEEEEcc
Q 001853 143 SVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIILKAS 207 (1004)
Q Consensus 143 sile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~-~~~L~ilP~~ 207 (1004)
++.+- ..++++ |.+ |..--+ ...+.++|.|+.| |.++ +..|...-+.
T Consensus 110 ~iw~~----~~W~~~--~sl--------K~H~~~---Vt~lsiHPS~KLA-LsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 110 IIWRV----GSWELL--KSL--------KAHKGQ---VTDLSIHPSGKLA-LSVGGDQVLRTWNLV 157 (362)
T ss_pred EEEEc----CCeEEe--eee--------cccccc---cceeEecCCCceE-EEEcCCceeeeehhh
Confidence 88653 345554 554 211111 4679999999987 5666 6667666554
No 19
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=69.66 E-value=90 Score=35.55 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=45.2
Q ss_pred ccEEEEEEC-CCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCCeEEECCCCCEEEEEEe-cCeEEEEEcc
Q 001853 130 RDSIILAFE-DAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIILKAS 207 (1004)
Q Consensus 130 ~D~Llv~~~-~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~-~~~L~ilP~~ 207 (1004)
..+.-+..+ +..+.+++||+..++|+.+=-+.- +...+....+..-+.+.|+||+.-.+=- .+.|+++-..
T Consensus 202 ~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t-------lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 202 GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT-------LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc-------CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 445556666 889999999999888776622211 2233333445567999999999865433 4555554443
No 20
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=69.48 E-value=73 Score=37.06 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=38.1
Q ss_pred CeEEEEEecCCCceEeee-ccc-ccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEE
Q 001853 678 GSIRLLVGDPSTCTVSVQ-TPA-AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSV 755 (1004)
Q Consensus 678 g~I~~l~~d~~~~~l~~~-~~~-~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (1004)
.+|.+|.+++.+..|... .+. .+...-..+-.+|||++... ..+++|
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~-------------------------------g~~ya~ 175 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPST-------------------------------GALYAF 175 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT---------------------------------EEEE
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCC-------------------------------CcEEEE
Confidence 579999999865556532 211 11111233678999987521 358999
Q ss_pred EEecCCeEEEEEcC
Q 001853 756 VCYESGALEIFDVP 769 (1004)
Q Consensus 756 ~~~~~g~l~I~sLp 769 (1004)
+.+++|.++-|.|-
T Consensus 176 v~~k~G~~~Qy~L~ 189 (381)
T PF02333_consen 176 VNGKDGRVEQYELT 189 (381)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EecCCceEEEEEEE
Confidence 99999999988874
No 21
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=68.12 E-value=2.1e+02 Score=32.18 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=45.7
Q ss_pred CEEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEE
Q 001853 64 NVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKIS 143 (1004)
Q Consensus 64 n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~akls 143 (1004)
.+|-+|++...+.+ ..+|+++++..+.|.|++|+.++ +.|+++. ..++.
T Consensus 62 Gri~v~~i~~~~~~--------------------~~~l~~i~~~~~~g~V~ai~~~~----------~~lv~~~-g~~l~ 110 (321)
T PF03178_consen 62 GRILVFEISESPEN--------------------NFKLKLIHSTEVKGPVTAICSFN----------GRLVVAV-GNKLY 110 (321)
T ss_dssp EEEEEEEECSS-------------------------EEEEEEEEEESS-EEEEEEET----------TEEEEEE-TTEEE
T ss_pred cEEEEEEEEccccc--------------------ceEEEEEEEEeecCcceEhhhhC----------CEEEEee-cCEEE
Confidence 67889998753110 12799999999999999999982 3566655 59999
Q ss_pred EEEEeCCCCcEEEEE
Q 001853 144 VLEFDDSIHGLRITS 158 (1004)
Q Consensus 144 ile~d~~~~~l~TvS 158 (1004)
+.+|+... .|...+
T Consensus 111 v~~l~~~~-~l~~~~ 124 (321)
T PF03178_consen 111 VYDLDNSK-TLLKKA 124 (321)
T ss_dssp EEEEETTS-SEEEEE
T ss_pred EEEccCcc-cchhhh
Confidence 99999876 566554
No 22
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.68 E-value=2.6e+02 Score=33.13 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=65.2
Q ss_pred cCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCC-EEEEEEeCCeEEEEEecCCCceEeeecccccccCCCc
Q 001853 628 ERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADP-YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKP 706 (1004)
Q Consensus 628 ~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dp-yvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~ 706 (1004)
...||++|..... .|-... +.|. .|.....-.+ .+++...++++.+|.+...+.++..... + ...
T Consensus 175 Dg~vrl~DtR~~~-~~v~el---nhg~-----pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~---H--~Kt 240 (487)
T KOG0310|consen 175 DGKVRLWDTRSLT-SRVVEL---NHGC-----PVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN---H--NKT 240 (487)
T ss_pred CceEEEEEeccCC-ceeEEe---cCCC-----ceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc---c--cce
Confidence 4568998865431 222210 2333 3666666555 6777778999999999876654432211 2 456
Q ss_pred eeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEe
Q 001853 707 VSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1004)
Q Consensus 707 i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~ 777 (1004)
++|++++.|.+ -|+-.-=+|.++||++-+++.+|..
T Consensus 241 VTcL~l~s~~~-----------------------------------rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 241 VTCLRLASDST-----------------------------------RLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred EEEEEeecCCc-----------------------------------eEeecccccceEEEEccceEEEEee
Confidence 99888865432 3444455899999999999999884
No 23
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=67.21 E-value=1.2e+02 Score=34.71 Aligned_cols=89 Identities=21% Similarity=0.204 Sum_probs=64.5
Q ss_pred cEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEEC----CCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcc
Q 001853 100 SLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFE----DAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRE 175 (1004)
Q Consensus 100 kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~----~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~ 175 (1004)
+|.++.....-+...-|+. +. ....|.++.+ .+.++.+.+++++..|.-++-... .|.
T Consensus 26 ~l~~~~~~~~~~~Ps~l~~----~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~---------~g~- 87 (345)
T PF10282_consen 26 TLTLVQTVAEGENPSWLAV----SP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS---------GGS- 87 (345)
T ss_dssp EEEEEEEEEESSSECCEEE-----T----TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE---------SSS-
T ss_pred CceEeeeecCCCCCceEEE----Ee----CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc---------CCC-
Confidence 5888888665555566554 22 5678888887 479999999999887876642221 121
Q ss_pred cccCCCeEEECCCCCEEEEEEe-cCeEEEEEcccC
Q 001853 176 SFARGPLVKVDPQGRCGGVLVY-GLQMIILKASQG 209 (1004)
Q Consensus 176 ~~~~~~~l~VDP~~Rca~l~~~-~~~L~ilP~~~~ 209 (1004)
.+-++.+||++|.+.+.-| .+.+.++++...
T Consensus 88 ---~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 88 ---SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp ---CEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ---CcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 1347999999999999998 899999998654
No 24
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=67.11 E-value=2.8e+02 Score=34.25 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=22.0
Q ss_pred CCeEEECCCCCEEEEEEecCeEEEEEccc
Q 001853 180 GPLVKVDPQGRCGGVLVYGLQMIILKASQ 208 (1004)
Q Consensus 180 ~~~l~VDP~~Rca~l~~~~~~L~ilP~~~ 208 (1004)
...+.+-|.|..+|..--.+.+-++-+.+
T Consensus 478 I~~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred ceeEEEcCCCCEEEEEeccceEEEEEccc
Confidence 44688999999998887777777766643
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=66.46 E-value=2.8e+02 Score=33.27 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=77.3
Q ss_pred cccCCeEEEEEeCCCcEEEEEecCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEe
Q 001853 606 FVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVG 685 (1004)
Q Consensus 606 ~~~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~ 685 (1004)
....+-+.++...++...|-+|-.+|.++...+.....++.- ....++.+-...+++|.-.|+.|.+|.+
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y----------~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGY----------ESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccc----------ccceEEEcCCCCEEEEecccceEEEEEe
Confidence 344455566666676689999999999998665554554420 1235555666899999999999999999
Q ss_pred cCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCeEEE
Q 001853 686 DPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEI 765 (1004)
Q Consensus 686 d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I 765 (1004)
.....+-+....+- ...|+.++. .+ ...|++.+..++.+-+
T Consensus 473 ~g~~l~ee~~~~~h----~a~iT~vay--Sp---------------------------------d~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 473 SGDELKEEAKLLEH----RAAITDVAY--SP---------------------------------DGAYLAAGDASRKVVL 513 (603)
T ss_pred cCCcccceeeeecc----cCCceEEEE--CC---------------------------------CCcEEEEeccCCcEEE
Confidence 76543222221111 334554332 11 1358899999999999
Q ss_pred EEcCCCe
Q 001853 766 FDVPNFN 772 (1004)
Q Consensus 766 ~sLp~~~ 772 (1004)
|++.+-+
T Consensus 514 yd~~s~~ 520 (603)
T KOG0318|consen 514 YDVASRE 520 (603)
T ss_pred EEcccCc
Confidence 9987644
No 26
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=63.36 E-value=2.8e+02 Score=31.90 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=90.0
Q ss_pred eEEEEEeCCCcEEEEEecCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcC--CEEEE--EEeCCeEEEEEec
Q 001853 611 TIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIAD--PYVLL--GMSDGSIRLLVGD 686 (1004)
Q Consensus 611 TI~ag~l~~~~~IvQVt~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~d--pyvll--~~~~g~I~~l~~d 686 (1004)
.|.+-.|. ++|+|-+.+..|-++|-..+.---.+..| ++. .....+-|.+. .|++. .+..|+|++|...
T Consensus 89 ~IL~VrmN-r~RLvV~Lee~IyIydI~~MklLhTI~t~-~~n-----~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 89 SILAVRMN-RKRLVVCLEESIYIYDIKDMKLLHTIETT-PPN-----PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred ceEEEEEc-cceEEEEEcccEEEEecccceeehhhhcc-CCC-----ccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 46666774 45899999999999997643211112111 011 12255555554 47776 4578999999876
Q ss_pred CCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCe-EEE
Q 001853 687 PSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGA-LEI 765 (1004)
Q Consensus 687 ~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-l~I 765 (1004)
+-.. +..... + ++.+.|+.+ ..+| .+++.+.+.|+ +.+
T Consensus 162 nl~~---v~~I~a-H--~~~lAalaf--s~~G---------------------------------~llATASeKGTVIRV 200 (391)
T KOG2110|consen 162 NLQP---VNTINA-H--KGPLAALAF--SPDG---------------------------------TLLATASEKGTVIRV 200 (391)
T ss_pred ccee---eeEEEe-c--CCceeEEEE--CCCC---------------------------------CEEEEeccCceEEEE
Confidence 5311 111111 1 455664333 3333 35556666665 478
Q ss_pred EEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceEEEEEeecCCCCCCcEEEEEe
Q 001853 766 FDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAIL 845 (1004)
Q Consensus 766 ~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill~~lg~~~~~p~L~v~~ 845 (1004)
|+.|+=+.+|+.. +......|-+|. |+++ .++|.+.-
T Consensus 201 f~v~~G~kl~eFR--------------------------------------RG~~~~~IySL~---Fs~d--s~~L~~sS 237 (391)
T KOG2110|consen 201 FSVPEGQKLYEFR--------------------------------------RGTYPVSIYSLS---FSPD--SQFLAASS 237 (391)
T ss_pred EEcCCccEeeeee--------------------------------------CCceeeEEEEEE---ECCC--CCeEEEec
Confidence 8888888888742 111112233333 3332 47999999
Q ss_pred eCCcEEEEEEEe
Q 001853 846 TDGTILCYQAYL 857 (1004)
Q Consensus 846 ~~g~l~iY~~f~ 857 (1004)
..++|-+|+.-.
T Consensus 238 ~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 238 NTETVHIFKLEK 249 (391)
T ss_pred CCCeEEEEEecc
Confidence 999999998764
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=61.91 E-value=2e+02 Score=29.76 Aligned_cols=75 Identities=24% Similarity=0.321 Sum_probs=45.0
Q ss_pred EEEEEEcCC--EEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccc
Q 001853 661 VLSVSIADP--YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1004)
Q Consensus 661 I~~As~~dp--yvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~ 738 (1004)
|.+..+... +++++..++.|.+|.+..... +... . .. ...+.++++. .
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~--~-~~--~~~i~~~~~~--~---------------------- 229 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTL--R-GH--ENGVNSVAFS--P---------------------- 229 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCCce-ecch--h-hc--CCceEEEEEc--C----------------------
Confidence 666666543 788887899999998865322 1110 0 11 2235543331 1
Q ss_pred cCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEE
Q 001853 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
...+++.+..+|.+.+|.+...+++..
T Consensus 230 -----------~~~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 230 -----------DGYLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred -----------CCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence 134666777799999999887665544
No 28
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=61.22 E-value=3.3e+02 Score=32.02 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=69.2
Q ss_pred ccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccc
Q 001853 659 STVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1004)
Q Consensus 659 ~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~ 738 (1004)
..-.++-.++.|++=+..|+...+..+........+.... . +-.++++-++.|
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--s--~v~~ts~~fHpD----------------------- 358 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET--S--DVEYTSAAFHPD----------------------- 358 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc--c--cceeEEeeEcCC-----------------------
Confidence 3455666779999988888888877776655433332210 1 334665555433
Q ss_pred cCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCccc
Q 001853 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKEN 818 (1004)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1004)
...+.....+|.|.||.|.+-.- +..|+ .
T Consensus 359 ------------gLifgtgt~d~~vkiwdlks~~~---~a~Fp---g--------------------------------- 387 (506)
T KOG0289|consen 359 ------------GLIFGTGTPDGVVKIWDLKSQTN---VAKFP---G--------------------------------- 387 (506)
T ss_pred ------------ceEEeccCCCceEEEEEcCCccc---cccCC---C---------------------------------
Confidence 34555667899999999986441 12222 1
Q ss_pred ccccceEEEEEeecCCCCCCcEEEEEeeCCcEEEEEE
Q 001853 819 IHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1004)
Q Consensus 819 ~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~ 855 (1004)
....|++|.+..=| -||.+...||.|.++..
T Consensus 388 -ht~~vk~i~FsENG-----Y~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 388 -HTGPVKAISFSENG-----YWLATAADDGSVKLWDL 418 (506)
T ss_pred -CCCceeEEEeccCc-----eEEEEEecCCeEEEEEe
Confidence 12246777665444 57888777777887744
No 29
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=57.51 E-value=4.6e+02 Score=32.50 Aligned_cols=97 Identities=20% Similarity=0.155 Sum_probs=60.9
Q ss_pred CeEEEEcCC-EEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEE
Q 001853 56 PNLVVTAAN-VIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSII 134 (1004)
Q Consensus 56 ~nLVvak~n-~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Ll 134 (1004)
.+|-|++++ .||||.+..+= -++.+..-+-.+.|.+|+=. .+ -.|
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~w------------------------~~~~vi~g~~drsIE~L~W~---e~------~RL- 83 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNNW------------------------FLEPVIHGPEDRSIESLAWA---EG------GRL- 83 (691)
T ss_pred CceeeeccCCcEEEEccCCCc------------------------eeeEEEecCCCCceeeEEEc---cC------CeE-
Confidence 679999865 89999987531 36666666666777777644 11 122
Q ss_pred EEECCCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCC--eEEECCCCCEEEEEEecCeEEEE
Q 001853 135 LAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGP--LVKVDPQGRCGGVLVYGLQMIIL 204 (1004)
Q Consensus 135 v~~~~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~--~l~VDP~~Rca~l~~~~~~L~il 204 (1004)
-+-.+.=+|.|||..+.+-.-. |. . .| ++ -+.+.|.+.-+++.+-++.|.++
T Consensus 84 -FS~g~sg~i~EwDl~~lk~~~~--~d---~------~g------g~IWsiai~p~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 84 -FSSGLSGSITEWDLHTLKQKYN--ID---S------NG------GAIWSIAINPENTILAIGCDDGVLYDF 137 (691)
T ss_pred -EeecCCceEEEEecccCceeEE--ec---C------CC------cceeEEEeCCccceEEeecCCceEEEE
Confidence 2335666789999865433211 11 0 11 22 27888999888888777855443
No 30
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=56.90 E-value=99 Score=34.74 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.6
Q ss_pred CCcEEEEEEecCCeEEEEEcCC
Q 001853 749 QGDIYSVVCYESGALEIFDVPN 770 (1004)
Q Consensus 749 ~~~~~l~~~~~~g~l~I~sLp~ 770 (1004)
...-||++..+.|+|+||+|.+
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 3467999999999999999987
No 31
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=54.55 E-value=3.9e+02 Score=30.79 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=21.4
Q ss_pred eecCCCCCCcEEEEEeeCCcEEEEEEEe
Q 001853 830 QRWSAHHSRPFLFAILTDGTILCYQAYL 857 (1004)
Q Consensus 830 ~~lg~~~~~p~L~v~~~~g~l~iY~~f~ 857 (1004)
+-|+.....|++.|+..||.+.+|+.-.
T Consensus 304 ~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 304 CSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred EEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 3344444579999999999999997653
No 32
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=54.10 E-value=51 Score=38.55 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=59.8
Q ss_pred EEEeecCCCCCCcEEEEEeeCCcEEEEEEEeecCCCCCCCCCCCCcccccccccccccccccceeEEeccCCcCCCCCCC
Q 001853 827 LAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETP 906 (1004)
Q Consensus 827 ill~~lg~~~~~p~L~v~~~~g~l~iY~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrf~Kv~~~~~~~~~~~ 906 (1004)
|..+.|.+ .+|.|+++--||.|-+|+.--.... +..+++|+|.|..
T Consensus 216 I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~------------------------~lqS~~l~~fPi~-------- 261 (514)
T KOG2055|consen 216 ITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNP------------------------KLQSIHLEKFPIQ-------- 261 (514)
T ss_pred ceEEEecC--CCceEEEecCCCcEEEEEecCccCh------------------------hheeeeeccCccc--------
Confidence 44455544 3799999999999999977522111 2356888887743
Q ss_pred CCCCccceEEecccCCceEEEecCCCCeEE-E--EcccccEEEeccCCCceEEEecC
Q 001853 907 HGAPCQRITIFKNISGHQGFFLSGSRPCWC-M--VFRERLRVHPQLCDGSIVAFTVL 960 (1004)
Q Consensus 907 ~~~~~~~l~~f~~i~g~sgVFv~G~~P~~i-~--~~~~~l~~~~~~~~~~v~~f~~F 960 (1004)
...|. -+|.+-||.+|.++++- + -......++|+.+. +=.+|-.|
T Consensus 262 ----~a~f~----p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~-e~~~~e~F 309 (514)
T KOG2055|consen 262 ----KAEFA----PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV-EEKSMERF 309 (514)
T ss_pred ----eeeec----CCCceEEEecccceEEEEeeccccccccccCCCCc-ccchhhee
Confidence 22222 27899999999999987 3 44566667777655 33344444
No 33
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.54 E-value=54 Score=35.16 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=46.6
Q ss_pred cEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceEEEEEe
Q 001853 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ 830 (1004)
Q Consensus 751 ~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill~ 830 (1004)
..||.+.+.+|.+.+|.++..++++.-.++. | +|.. .... .....+.|+.+.|.
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~--p-ll~~----~~~~-------------------~~~~~~~i~~~~lt 75 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIA--P-LLNS----SPVS-------------------DKSSSPNITSCSLT 75 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHH--H-Hhcc----cccc-------------------cCCCCCcEEEEEEc
Confidence 4579999999999999999999988743332 3 4321 1100 00234556666666
Q ss_pred ecCCCCCCcEEEEEeeCCcEEEEEE
Q 001853 831 RWSAHHSRPFLFAILTDGTILCYQA 855 (1004)
Q Consensus 831 ~lg~~~~~p~L~v~~~~g~l~iY~~ 855 (1004)
.=| .|. |.+.+|+..+|..
T Consensus 76 ~~G----~Pi--V~lsng~~y~y~~ 94 (219)
T PF07569_consen 76 SNG----VPI--VTLSNGDSYSYSP 94 (219)
T ss_pred CCC----CEE--EEEeCCCEEEecc
Confidence 333 464 4578899888854
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=50.22 E-value=2.3e+02 Score=32.49 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=66.9
Q ss_pred cEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEc--CCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCce
Q 001853 630 GARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPV 707 (1004)
Q Consensus 630 ~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~--dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i 707 (1004)
-+|+.|-....+...+. | ....|...-++ ||+|+-+..|++|.++.+-.+.....+... +..+
T Consensus 258 t~RvWDiRtr~~V~~l~------G---H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h------kksv 322 (460)
T KOG0285|consen 258 TIRVWDIRTRASVHVLS------G---HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH------KKSV 322 (460)
T ss_pred eEEEeeecccceEEEec------C---CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc------ccee
Confidence 46666655444444442 2 11235555555 999999999999999998776543433322 4457
Q ss_pred eEEEEeecCCCCcceecccccccc----cCccc-cccCCCCC--CC-CCCCcEEEEEEecCCeEEEEEcCC
Q 001853 708 SSCTLYHDKGPEPWLRKTSTDAWL----STGVG-EAIDGADG--GP-LDQGDIYSVVCYESGALEIFDVPN 770 (1004)
Q Consensus 708 ~~~~l~~d~~g~~~f~~~~~~~~~----~~~~~-~~~~~~~~--~~-~~~~~~~l~~~~~~g~l~I~sLp~ 770 (1004)
.|.||+-..+ .|....++.-. +.+.. .+....+. .. ....+-++|..-++|.|..|.-.+
T Consensus 323 ral~lhP~e~---~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 323 RALCLHPKEN---LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred eEEecCCchh---hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 7888875443 55444332110 11110 01110000 00 012345778888899999988544
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.68 E-value=5.1e+02 Score=32.61 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=72.0
Q ss_pred cEEEEEEc--CCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCcccc
Q 001853 660 TVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1004)
Q Consensus 660 ~I~~As~~--dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~ 737 (1004)
.|.++.++ |.||++...+|.+.+|.+-.... +|. .++. +.-|.++++-.|.
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l-~Et--i~AH---dgaIWsi~~~pD~--------------------- 466 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASL-VET--IRAH---DGAIWSISLSPDN--------------------- 466 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhh-hhh--hhcc---ccceeeeeecCCC---------------------
Confidence 35666664 99999999999999999976532 332 1221 4446655553332
Q ss_pred ccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccc-cccccccccccccccchhccCCCccccCCCCc
Q 001853 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGR-THIVDTYMREALKDSETEINSSSEEGTGQGRK 816 (1004)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1004)
-.++....+-++.+|++ +++..+ +.-+ .+|. . +
T Consensus 467 --------------~g~vT~saDktVkfWdf---~l~~~~---~gt~~k~ls---------l-----------------~ 500 (888)
T KOG0306|consen 467 --------------KGFVTGSADKTVKFWDF---KLVVSV---PGTQKKVLS---------L-----------------K 500 (888)
T ss_pred --------------CceEEecCCcEEEEEeE---EEEecc---Ccccceeee---------e-----------------c
Confidence 24566677888899874 555542 1111 1110 0 0
Q ss_pred ccccccceEEEEEeecCCCCCCcEEEEEeeCCcEEEEEEE
Q 001853 817 ENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAY 856 (1004)
Q Consensus 817 ~~~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~f 856 (1004)
....-+.--+|+-+.+-++ .-||.|.+-|.++-+|-.-
T Consensus 501 ~~rtLel~ddvL~v~~Spd--gk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 501 HTRTLELEDDVLCVSVSPD--GKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred cceEEeccccEEEEEEcCC--CcEEEEEeccCeEEEEEec
Confidence 0001111235666666554 4799999999999999543
No 36
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=48.82 E-value=1.7e+02 Score=34.96 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=56.7
Q ss_pred ccccEEEEEecCceEEEE-ecCceeEEecCCCcc-----ccC--CeEEEEEeCC---CcEEEEEecCcEEEEeCC---cc
Q 001853 574 EYHAYLIISLEARTMVLE-TADLLTEVTESVDYF-----VQG--RTIAAGNLFG---RRRVIQVFERGARILDGS---YM 639 (1004)
Q Consensus 574 ~~~~yLilS~~~~T~Vl~-~~~~l~ev~~~~~F~-----~~~--~TI~ag~l~~---~~~IvQVt~~~vrl~~~~---~~ 639 (1004)
.-+.+|++|....-.||- -|-++.|.--...++ +.+ .+|.+|...- +.++---....+|+.+.+ .+
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 346788888887777774 344555543122222 112 2444444321 111111223457777755 24
Q ss_pred eeEEeCCCCCCCCCCCCCCccEEEEEEc--CCEEEEEEeCCeEEEEEecC
Q 001853 640 TQDLSFGPSNSESGSGSENSTVLSVSIA--DPYVLLGMSDGSIRLLVGDP 687 (1004)
Q Consensus 640 ~q~~~~~~~~~e~g~~~~~~~I~~As~~--dpyvll~~~~g~I~~l~~d~ 687 (1004)
.|.+..- ..| +....++.|..+ .+.++-++.||+|.+|....
T Consensus 305 ~qVik~k----~~~--g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 305 LQVIKTK----PAG--GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred eeEEeec----cCC--CcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence 5555542 112 112223444443 67888889999999999744
No 37
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=48.41 E-value=66 Score=41.14 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=63.0
Q ss_pred hhhhccCCCceeeEEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCeEEEE-----------cCCEEEEEEEEe
Q 001853 5 AYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVT-----------AANVIEIYVVRV 73 (1004)
Q Consensus 5 ~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVva-----------k~n~LeIy~v~~ 73 (1004)
.+.++.++-.+..+++|+|++... .-+||+ +..+|-||++.+
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~---------------------------t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPN---------------------------TYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCc---------------------------eEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 345688888999999999997654 345543 345788888875
Q ss_pred cccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCC
Q 001853 74 QEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDS 150 (1004)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~ 150 (1004)
.+ +|++++|..+-|.+.+|..+. +.|+.++ ...+.+.+|-.+
T Consensus 817 ~~------------------------~L~~v~e~~v~Gav~aL~~fn----------gkllA~I-n~~vrLye~t~~ 858 (1096)
T KOG1897|consen 817 LN------------------------SLELVAETVVKGAVYALVEFN----------GKLLAGI-NQSVRLYEWTTE 858 (1096)
T ss_pred CC------------------------ceeeeeeeeeccceeehhhhC----------CeEEEec-CcEEEEEEcccc
Confidence 22 799999999999999987654 3455444 688999999765
No 38
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=46.39 E-value=5.7e+02 Score=30.35 Aligned_cols=25 Identities=4% Similarity=0.198 Sum_probs=19.2
Q ss_pred EEEEEEecCCeEEEEEcCCCeEEEE
Q 001853 752 IYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 752 ~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
.++++...+|.+.++.-.+.+++-+
T Consensus 316 ~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 316 NFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred CeEEEcccCceEEeehhhhhhhhhe
Confidence 4888899999999988776665443
No 39
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=46.19 E-value=75 Score=37.78 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=68.7
Q ss_pred CCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCC
Q 001853 668 DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPL 747 (1004)
Q Consensus 668 dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1004)
-..+|-+..||++.+|.++.....+++.++.........++ .|-|.-
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t-sC~~nr-------------------------------- 327 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT-SCAWNR-------------------------------- 327 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce-eeecCC--------------------------------
Confidence 34455566899999999998766677665554332122233 344321
Q ss_pred CCCcEEEEEEecCCeEEEEEcCCCe--EEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceE
Q 001853 748 DQGDIYSVVCYESGALEIFDVPNFN--CVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVV 825 (1004)
Q Consensus 748 ~~~~~~l~~~~~~g~l~I~sLp~~~--~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 825 (1004)
...|++..+.+|++.||+++.+. ++|.+. +.|.....|.
T Consensus 328 --dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-------------------------------------~AH~~g~~It 368 (641)
T KOG0772|consen 328 --DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-------------------------------------DAHLPGQDIT 368 (641)
T ss_pred --CcchhhhcccCCceeeeecCCcccccceEee-------------------------------------eccCCCCcee
Confidence 12367778889999999998743 233332 1222333577
Q ss_pred EEEEeecCCCCCCcEEEEEeeCCcEEEEEE
Q 001853 826 ELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1004)
Q Consensus 826 eill~~lg~~~~~p~L~v~~~~g~l~iY~~ 855 (1004)
.|.+..-|. ||+-+-.|+.|-++..
T Consensus 369 si~FS~dg~-----~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 369 SISFSYDGN-----YLLSRGFDDTLKVWDL 393 (641)
T ss_pred EEEeccccc-----hhhhccCCCceeeeec
Confidence 777776663 5777777777776644
No 40
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=46.17 E-value=1.6e+02 Score=34.51 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCEEEEEEeCCeEEEEEecC-CCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCC
Q 001853 668 DPYVLLGMSDGSIRLLVGDP-STCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGP 746 (1004)
Q Consensus 668 dpyvll~~~~g~I~~l~~d~-~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1004)
.+.+++.++.|.+..|.+.+ .+.+..+.........++++.+++.+...+|.+-. ++....+ ...
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~--At~~~~~------~l~------ 220 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESAL--ATISAMQ------GLS------ 220 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B---BHHHHH------GGG------
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCccc--CchhHhh------ccc------
Confidence 35677788999999999974 33334433222111115677877777655552100 0000000 000
Q ss_pred CCCCcEEEEEEecCCeEEEEEcCCCeEEEEe
Q 001853 747 LDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1004)
Q Consensus 747 ~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~ 777 (1004)
....-..++++..+-.++||++|+.+..++.
T Consensus 221 ~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~ 251 (395)
T PF08596_consen 221 KGISIPGYVVVVSESDIRVFKPPKSKGAHKS 251 (395)
T ss_dssp GT----EEEEEE-SSEEEEE-TT---EEEEE
T ss_pred cCCCcCcEEEEEcccceEEEeCCCCccccee
Confidence 0111223444555667799999998876653
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.48 E-value=3.6e+02 Score=33.72 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=65.0
Q ss_pred ccCCeEEEEEeCCCcEEEEEec--CcEEEEeCCcc-eeEEeCCCCCCCCCCCCCCccEEEEE--EcCCEEEEEEeCCeEE
Q 001853 607 VQGRTIAAGNLFGRRRVIQVFE--RGARILDGSYM-TQDLSFGPSNSESGSGSENSTVLSVS--IADPYVLLGMSDGSIR 681 (1004)
Q Consensus 607 ~~~~TI~ag~l~~~~~IvQVt~--~~vrl~~~~~~-~q~~~~~~~~~e~g~~~~~~~I~~As--~~dpyvll~~~~g~I~ 681 (1004)
.++.-..+.-+|.....+=|-+ .++|+|+-..+ -|.++-- .-.|-+.+ ..+-+++-+..|.++.
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH-----------~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGH-----------TEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCc-----------hhheeeeeecccCcEEEEecCCceEE
Confidence 3444555666664444444443 35999975542 3333211 11244444 3343455556899999
Q ss_pred EEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCC
Q 001853 682 LLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESG 761 (1004)
Q Consensus 682 ~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 761 (1004)
+++++++-.+.........+ ...+.+.++ ... .--+++...+++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH--~~svgava~--~~~--------------------------------~asffvsvS~D~ 434 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGH--TNSVGAVAG--SKL--------------------------------GASFFVSVSQDC 434 (775)
T ss_pred EEEecCCcchhhhhhhhccc--ccccceeee--ccc--------------------------------CccEEEEecCCc
Confidence 99996654322211111222 445666555 221 123678888999
Q ss_pred eEEEEEcCC
Q 001853 762 ALEIFDVPN 770 (1004)
Q Consensus 762 ~l~I~sLp~ 770 (1004)
+|++|.||.
T Consensus 435 tlK~W~l~~ 443 (775)
T KOG0319|consen 435 TLKLWDLPK 443 (775)
T ss_pred eEEEecCCC
Confidence 999999998
No 42
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.43 E-value=7.1e+02 Score=31.44 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=112.4
Q ss_pred cEEEEEEcCCEEEEEE-eCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccc
Q 001853 660 TVLSVSIADPYVLLGM-SDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1004)
Q Consensus 660 ~I~~As~~dpyvll~~-~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~ 738 (1004)
.|...+-...+.||.. -|.++.|++...+.+ |.+-.. .+-++|+. |+ +
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C-L~~F~H------ndfVTcVa----------Fn--------------P 419 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC-LKVFSH------NDFVTCVA----------FN--------------P 419 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCCCcce-eeEEec------CCeeEEEE----------ec--------------c
Confidence 3777777777776644 699999999988776 432211 33466432 21 2
Q ss_pred cCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCccc
Q 001853 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKEN 818 (1004)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1004)
+| .-|.+-..=+|.+.||++|+.+.++=.+ +.
T Consensus 420 vD----------DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~------------------------------------- 451 (712)
T KOG0283|consen 420 VD----------DRYFISGSLDGKVRLWSISDKKVVDWND-LR------------------------------------- 451 (712)
T ss_pred cC----------CCcEeecccccceEEeecCcCeeEeehh-hh-------------------------------------
Confidence 22 2244555669999999999999877522 11
Q ss_pred ccccceEEEEEeecCCCCCCcEEEEEeeCCcEEEEEEEeecCCCCCCCCCCCCcccccccccccccccccceeEEeccCC
Q 001853 819 IHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLD 898 (1004)
Q Consensus 819 ~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrf~Kv~~~ 898 (1004)
..|+-+++..=| -+-+|.+-+|...+|...-...+ -+..+..++. ||..
T Consensus 452 ---~lITAvcy~PdG-----k~avIGt~~G~C~fY~t~~lk~~-------------~~~~I~~~~~--------Kk~~-- 500 (712)
T KOG0283|consen 452 ---DLITAVCYSPDG-----KGAVIGTFNGYCRFYDTEGLKLV-------------SDFHIRLHNK--------KKKQ-- 500 (712)
T ss_pred ---hhheeEEeccCC-----ceEEEEEeccEEEEEEccCCeEE-------------EeeeEeeccC--------cccc--
Confidence 234445554333 57889999999999976521110 0000000000 1111
Q ss_pred cCCCCCCCCCCCccceEEecccCCceEEEecCCCCeEE-EEcccccEEEeccCCCceEEEecCCCCCCCCcEEEEecCCc
Q 001853 899 AYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWC-MVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGI 977 (1004)
Q Consensus 899 ~~~~~~~~~~~~~~~l~~f~~i~g~sgVFv~G~~P~~i-~~~~~~l~~~~~~~~~~v~~f~~F~~~~~~~gfiy~~~~~~ 977 (1004)
+. +++-|. |.+|..--.| -+..+++|++-......|.-|--|+|.+ .+-.+.|+.+|.
T Consensus 501 ---------~~---rITG~Q--------~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~-SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 501 ---------GK---RITGLQ--------FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS-SQISASFSSDGK 559 (712)
T ss_pred ---------Cc---eeeeeE--------ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC-cceeeeEccCCC
Confidence 11 222221 3334333344 5778999999764454677788888843 455677777777
Q ss_pred EEEEECCCC
Q 001853 978 LKICQLPSG 986 (1004)
Q Consensus 978 lri~~lp~~ 986 (1004)
--||--...
T Consensus 560 ~IVs~seDs 568 (712)
T KOG0283|consen 560 HIVSASEDS 568 (712)
T ss_pred EEEEeecCc
Confidence 666666443
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=44.73 E-value=1.9e+02 Score=31.83 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred CcEEEEeCC--cceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCc
Q 001853 629 RGARILDGS--YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKP 706 (1004)
Q Consensus 629 ~~vrl~~~~--~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~ 706 (1004)
+.||+.+.. +.++.+... .+..++..+-.+.|+++.-.|..|..+..-......+.+.....+
T Consensus 87 k~ir~wd~r~~k~~~~i~~~----------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n----- 151 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETK----------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN----- 151 (313)
T ss_pred ceEEEEEeccCcEEEEeecc----------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee-----
Q ss_pred eeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEec
Q 001853 707 VSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1004)
Q Consensus 707 i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~ 778 (1004)
-+|- ..+..+.|+.+..|.++|++-|.|++|+..+
T Consensus 152 --e~~w-----------------------------------~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 152 --EISW-----------------------------------NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred --eeee-----------------------------------cCCCCEEEEecCCceEEEEeccccccccccc
No 44
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=44.55 E-value=4.3e+02 Score=28.35 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=34.5
Q ss_pred EECCCCCEEEEEEecCeEEEEEcccCCCCCCCCCCCCCCCCCcccceeeeEEEEecccCCCceeeEEEecCC
Q 001853 184 KVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGY 255 (1004)
Q Consensus 184 ~VDP~~Rca~l~~~~~~L~ilP~~~~~~~l~~~d~~~~~~~~~~~~~~~s~~i~l~~ldi~nViD~~FL~gy 255 (1004)
.--|.|..++-.-.+..++++||+.+.-. ...+-..+++-+ ..|+|||||.+-
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~----------------~~g~dle~nmhd---gtirdl~fld~~ 148 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCN----------------ATGHDLEFNMHD---GTIRDLAFLDDP 148 (350)
T ss_pred EecCccCeEEecCCCceEEEEeccccccc----------------ccCcceeeeecC---CceeeeEEecCC
Confidence 45777887777767888999999754310 122333444443 788899998663
No 45
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=43.79 E-value=1.6e+02 Score=29.19 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=49.4
Q ss_pred CeEEEEc-CCEEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEE
Q 001853 56 PNLVVTA-ANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSII 134 (1004)
Q Consensus 56 ~nLVvak-~n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Ll 134 (1004)
++|+.|. +..+=||........... .=.-+....+.-.|++|++=|+..+. .+|.|+
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------~~~~i~~LNin~~italaaG~l~~~~---~~D~Ll 68 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGR-------------------QDSDISFLNINQEITALAAGRLKPDD---GRDCLL 68 (136)
T ss_pred eeEEEEecCCEEEEECCCcccccccc-------------------ccCceeEEECCCceEEEEEEecCCCC---CcCEEE
Confidence 7888875 678888876533210000 01235666788889999988886432 899999
Q ss_pred EEECCCeEEEEEEeCCCC
Q 001853 135 LAFEDAKISVLEFDDSIH 152 (1004)
Q Consensus 135 v~~~~aklsile~d~~~~ 152 (1004)
|+|.. +|+-||-+.+
T Consensus 69 iGt~t---~llaYDV~~N 83 (136)
T PF14781_consen 69 IGTQT---SLLAYDVENN 83 (136)
T ss_pred Eeccc---eEEEEEcccC
Confidence 99976 6888997665
No 46
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=43.46 E-value=5.1e+02 Score=28.90 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=71.6
Q ss_pred EEEEEEc-CCEEEE-EEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccc
Q 001853 661 VLSVSIA-DPYVLL-GMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1004)
Q Consensus 661 I~~As~~-dpyvll-~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~ 738 (1004)
+..+.+. |--++. .=.||++.++.+++....-.+.. ...|.++|+
T Consensus 195 v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a-------~~~v~sl~f-------------------------- 241 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA-------FDIVNSLCF-------------------------- 241 (315)
T ss_pred EEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC-------CCeEeeEEe--------------------------
Confidence 4444443 333333 33688999999988755222211 233555554
Q ss_pred cCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCccc
Q 001853 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKEN 818 (1004)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1004)
....+||..++..+ ++||.|-.-.+|+..+ +... .. .
T Consensus 242 ---------spnrywL~~at~~s-IkIwdl~~~~~v~~l~-----~d~~---------g~-------------------s 278 (315)
T KOG0279|consen 242 ---------SPNRYWLCAATATS-IKIWDLESKAVVEELK-----LDGI---------GP-------------------S 278 (315)
T ss_pred ---------cCCceeEeeccCCc-eEEEeccchhhhhhcc-----cccc---------cc-------------------c
Confidence 22368998888877 7999998877766532 1110 00 0
Q ss_pred ccccceEEEEEeecCCCCCCcEEEEEeeCCcEEEEEEE
Q 001853 819 IHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAY 856 (1004)
Q Consensus 819 ~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~f 856 (1004)
.....+..+.++-.-+ ..+||+...||-|.++|.-
T Consensus 279 ~~~~~~~clslaws~d---G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSAD---GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccCCcEEEEEEEcCC---CcEEEeeecCCcEEEEEee
Confidence 1123466777776643 4799999999999998764
No 47
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=41.14 E-value=3.6e+02 Score=32.22 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=54.1
Q ss_pred ccEEEEEEc--CCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccc
Q 001853 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1004)
Q Consensus 659 ~~I~~As~~--dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~ 736 (1004)
..|+....+ |.||+-...+|.|++.....+-..-+...+ ..+.. -|. +
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~------sgqsv--Rll-~--------------------- 171 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID------SGQSV--RLL-R--------------------- 171 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC------CCCeE--EEe-e---------------------
Confidence 347777654 999998888999998877554211111000 11211 010 0
Q ss_pred cccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccc
Q 001853 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGR 784 (1004)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~ 784 (1004)
........|.++.++|.+.+|....+.+.|........|
T Consensus 172 ---------ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP 210 (673)
T KOG4378|consen 172 ---------YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP 210 (673)
T ss_pred ---------cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence 013346789999999999999999888888765554444
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=40.97 E-value=5.6e+02 Score=28.89 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCcEEEEe----CCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeecccccccC
Q 001853 628 ERGARILD----GSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESS 703 (1004)
Q Consensus 628 ~~~vrl~~----~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~ 703 (1004)
.+.|+|+| ..+--+.+.+. +.. ..+-+-+.-|=++.|+||...++.+.++..=....+-.....+.
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~----~~~--~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~---- 230 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSIT----DND--EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN---- 230 (311)
T ss_pred CCeEEEEEecccCCCCceeEccC----CCC--ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC----
Q ss_pred CCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCcc
Q 001853 704 KKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSG 783 (1004)
Q Consensus 704 ~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~ 783 (1004)
...+...+-|... +.+++.+-.+|+++||.+.+-+.|....+...+
T Consensus 231 ~~~~~~~a~ftPd----------------------------------s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~ 276 (311)
T KOG1446|consen 231 AGNLPLSATFTPD----------------------------------SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG 276 (311)
T ss_pred CCCcceeEEECCC----------------------------------CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC
Q ss_pred c
Q 001853 784 R 784 (1004)
Q Consensus 784 ~ 784 (1004)
|
T Consensus 277 ~ 277 (311)
T KOG1446|consen 277 P 277 (311)
T ss_pred C
No 49
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=39.25 E-value=54 Score=26.17 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred EEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeC
Q 001853 101 LELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDD 149 (1004)
Q Consensus 101 L~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~ 149 (1004)
++++.+..+...|..++ .-| ..|.|.+++.++.+.+-+.+-
T Consensus 2 f~~~~~k~l~~~v~~~~-w~P-------~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMS-WCP-------TMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cceecccCCCCcEEEEE-ECC-------CCCEEEEEECCCeEEEEECCC
Confidence 56777888877777443 222 679999999999999988753
No 50
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=38.74 E-value=1.8e+02 Score=32.01 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=44.4
Q ss_pred CCeEEEEcCCEEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEE
Q 001853 55 VPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSII 134 (1004)
Q Consensus 55 ~~nLVvak~n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Ll 134 (1004)
..+|||+..+. +||-+.+++ +..+.++.+-+..+.|.+.=.-.. .-=+|+
T Consensus 195 ~scLViGTE~~-~i~iLd~~a-------------------------f~il~~~~lpsvPv~i~~~G~~de----vdyRI~ 244 (257)
T PF14779_consen 195 VSCLVIGTESG-EIYILDPQA-------------------------FTILKQVQLPSVPVFISVSGQYDE----VDYRIV 244 (257)
T ss_pred cceEEEEecCC-eEEEECchh-------------------------heeEEEEecCCCceEEEEEeeeec----cceEEE
Confidence 37999998764 367666654 778889999888777665421110 122899
Q ss_pred EEECCCeEEEEE
Q 001853 135 LAFEDAKISVLE 146 (1004)
Q Consensus 135 v~~~~aklsile 146 (1004)
|+++++++-+++
T Consensus 245 Va~Rdg~iy~ir 256 (257)
T PF14779_consen 245 VACRDGKIYTIR 256 (257)
T ss_pred EEeCCCEEEEEe
Confidence 999999998875
No 51
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=38.02 E-value=2.4e+02 Score=32.78 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=47.5
Q ss_pred cEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccC
Q 001853 100 SLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFAR 179 (1004)
Q Consensus 100 kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~ 179 (1004)
..+.+.+.+..|.+-....+.+ ..-+++|+.+++.+++ +|..++++.-. .+.|..
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~-------Dgr~~yv~~rdg~vsv--iD~~~~~~v~~------------i~~G~~---- 79 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSP-------DGRYLYVANRDGTVSV--IDLATGKVVAT------------IKVGGN---- 79 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT--------SSEEEEEETTSEEEE--EETTSSSEEEE------------EE-SSE----
T ss_pred CCeEEEEEcCCCCceeEEEecC-------CCCEEEEEcCCCeEEE--EECCcccEEEE------------EecCCC----
Confidence 3667777777655422222222 2348999999997665 58877764422 122332
Q ss_pred CCeEEECCCCCEEEEEEe-cCeEEEEE
Q 001853 180 GPLVKVDPQGRCGGVLVY-GLQMIILK 205 (1004)
Q Consensus 180 ~~~l~VDP~~Rca~l~~~-~~~L~ilP 205 (1004)
..-+.+.|+||++++..| .+.+.|+-
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred cceEEEcCCCCEEEEEecCCCceeEec
Confidence 123788899999999988 78888863
No 52
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=37.80 E-value=7.5e+02 Score=29.24 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=56.4
Q ss_pred cccEEEEEecCceEEEEe---cCceeEEecCCCccccCCeEEEEEeCCCcEEEEEecCcEEEEeCC--cceeEEeCCCCC
Q 001853 575 YHAYLIISLEARTMVLET---ADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS--YMTQDLSFGPSN 649 (1004)
Q Consensus 575 ~~~yLilS~~~~T~Vl~~---~~~l~ev~~~~~F~~~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~--~~~q~~~~~~~~ 649 (1004)
...||+-+-.++|-.|+. +..+..+. +. +++--+. -.|++|.|+.+-.+. +.+..|.+..-+
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs-~~---~s~v~~t---------s~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVS-DE---TSDVEYT---------SAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEe-ec---cccceeE---------EeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 346888887788888873 44444443 10 1212222 345566665554432 355566553110
Q ss_pred CCCCCCCCCccEEEEEE--cCCEEEEEEeCCeEEEEEecC
Q 001853 650 SESGSGSENSTVLSVSI--ADPYVLLGMSDGSIRLLVGDP 687 (1004)
Q Consensus 650 ~e~g~~~~~~~I~~As~--~dpyvll~~~~g~I~~l~~d~ 687 (1004)
.-...|++...|...++ |+=|+++.++|++|.+|.+-.
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 00111223345777777 466888899999999999854
No 53
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.48 E-value=9.6e+02 Score=30.40 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCceEEEEeCCCccEeEEEeecCCCCCC----CCcccccccCcccccEEEEEecCceEEEEecCceeEEecCCCccccCC
Q 001853 535 KQSNYELVELPGCKGIWTVYHKSSRGHN----ADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGR 610 (1004)
Q Consensus 535 ~~GsL~v~~lpg~~~iWtv~~~~~~~~~----~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~~~~l~ev~~~~~F~~~~~ 610 (1004)
.+|-+.+.+||+..-|-.+.....+-.. ..++-..-...+--..||---..++.||+-.+....++ .-.+..+++
T Consensus 285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~-~l~YSpDgq 363 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRIT-SLAYSPDGQ 363 (893)
T ss_pred cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccccee-eEEECCCCc
Confidence 3444445788886666656543211000 00000000112223445555556777776655555554 344445555
Q ss_pred eEEEEEeCCCcEEEEEecCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCc
Q 001853 611 TIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTC 690 (1004)
Q Consensus 611 TI~ag~l~~~~~IvQVt~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~ 690 (1004)
-|+.|-= ...|++++....-=...+. |. ..+...++-+.....++-+.-||++..|.+..-..
T Consensus 364 ~iaTG~e----------DgKVKvWn~~SgfC~vTFt----eH---ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 364 LIATGAE----------DGKVKVWNTQSGFCFVTFT----EH---TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred EEEeccC----------CCcEEEEeccCceEEEEec----cC---CCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 5544431 3346777654311112222 21 12344566666666666677899999999865321
Q ss_pred eEeeecccccccCCCceeEEEEeecCCCC
Q 001853 691 TVSVQTPAAIESSKKPVSSCTLYHDKGPE 719 (1004)
Q Consensus 691 ~l~~~~~~~~~~~~~~i~~~~l~~d~~g~ 719 (1004)
-=.... ..++...|+..|++|+
T Consensus 427 fRTft~-------P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 427 FRTFTS-------PEPIQFSCVAVDPSGE 448 (893)
T ss_pred eeeecC-------CCceeeeEEEEcCCCC
Confidence 111112 2345566999999884
No 54
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=37.02 E-value=5.2e+02 Score=32.08 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=16.4
Q ss_pred CeEEEEcCCEEEEEEEEe
Q 001853 56 PNLVVTAANVIEIYVVRV 73 (1004)
Q Consensus 56 ~nLVvak~n~LeIy~v~~ 73 (1004)
.+||+|.+|+|-||+++.
T Consensus 25 sqL~lAAg~rlliyD~nd 42 (1081)
T KOG1538|consen 25 TQLILAAGSRLLVYDTSD 42 (1081)
T ss_pred ceEEEecCCEEEEEeCCC
Confidence 799999999999999863
No 55
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=36.98 E-value=1.9e+02 Score=32.34 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=41.6
Q ss_pred cEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCC
Q 001853 660 TVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGP 718 (1004)
Q Consensus 660 ~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g 718 (1004)
++=+|.+-.|.+++++.+..|.+|.+.+..........+ + +.++-++++|.|..+
T Consensus 158 RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~Sp-L---k~Q~R~va~f~d~~~ 212 (347)
T KOG0647|consen 158 RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESP-L---KWQTRCVACFQDKDG 212 (347)
T ss_pred eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCc-c---cceeeEEEEEecCCc
Confidence 478899999999999999999999997653322222222 2 667888889999876
No 56
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=36.66 E-value=6.1e+02 Score=28.33 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=48.3
Q ss_pred cEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEEC-CCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCccccc
Q 001853 100 SLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFE-DAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFA 178 (1004)
Q Consensus 100 kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~-~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~ 178 (1004)
+|.++.+.++-|....|+.- + ....|+++.. +++++++.++....-...+ +.++ + ..
T Consensus 69 ~l~~~~~~~~~~~p~~i~~~-~-------~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~--~~~~---------~---~~ 126 (330)
T PRK11028 69 ALTFAAESPLPGSPTHISTD-H-------QGRFLFSASYNANCVSVSPLDKDGIPVAPI--QIIE---------G---LE 126 (330)
T ss_pred ceEEeeeecCCCCceEEEEC-C-------CCCEEEEEEcCCCeEEEEEECCCCCCCCce--eecc---------C---CC
Confidence 47666666665555544421 1 3446776654 6777776665321111111 1110 1 01
Q ss_pred CCCeEEECCCCCEEEEEEe-cCeEEEEEccc
Q 001853 179 RGPLVKVDPQGRCGGVLVY-GLQMIILKASQ 208 (1004)
Q Consensus 179 ~~~~l~VDP~~Rca~l~~~-~~~L~ilP~~~ 208 (1004)
...-+.++|+|+.+.+.-+ .+.+.++.+..
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred cccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 1234679999999976666 68888887754
No 57
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.35 E-value=4.5e+02 Score=30.30 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceEEEEE
Q 001853 750 GDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAM 829 (1004)
Q Consensus 750 ~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill 829 (1004)
+..+|+....+++++||.++.-.|+|+..+.. .=|+++++
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd----------------------------------------nwVr~~af 342 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD----------------------------------------NWVRGVAF 342 (406)
T ss_pred CccEEEeecccceEEEEeccCCeEEEEEeccc----------------------------------------ceeeeeEE
Confidence 56899999999999999999999999864332 13566766
Q ss_pred eecCCCCCCcEEEEEeeCCcEEEEEEE
Q 001853 830 QRWSAHHSRPFLFAILTDGTILCYQAY 856 (1004)
Q Consensus 830 ~~lg~~~~~p~L~v~~~~g~l~iY~~f 856 (1004)
..=| -||+-...|+.|-+|..-
T Consensus 343 ~p~G-----kyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 343 SPGG-----KYILSCADDKTLRVWDLK 364 (406)
T ss_pred cCCC-----eEEEEEecCCcEEEEEec
Confidence 5433 689988999999999654
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=35.64 E-value=7.5e+02 Score=28.59 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=73.6
Q ss_pred CCCccccCCeEEEEEeCCCcEEEEEecCcEEE-EeCCcceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEeCCeE
Q 001853 602 SVDYFVQGRTIAAGNLFGRRRVIQVFERGARI-LDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSI 680 (1004)
Q Consensus 602 ~~~F~~~~~TI~ag~l~~~~~IvQVt~~~vrl-~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~~g~I 680 (1004)
...|..++.-|+-|-|.+.-+|-+|-+.+.+. ++..-.-.+|--| - . ..+.++-...||++
T Consensus 111 ~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~W--H-------p---------~a~illAG~~DGsv 172 (399)
T KOG0296|consen 111 CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKW--H-------P---------RAHILLAGSTDGSV 172 (399)
T ss_pred EEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEe--c-------c---------cccEEEeecCCCcE
Confidence 35588888888888887665666666655443 3322111244332 0 0 24455667789999
Q ss_pred EEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecC
Q 001853 681 RLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYES 760 (1004)
Q Consensus 681 ~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (1004)
-+|++.+.. +. +........++++++..| | .-++...++
T Consensus 173 Wmw~ip~~~--~~----kv~~Gh~~~ct~G~f~pd--G---------------------------------Kr~~tgy~d 211 (399)
T KOG0296|consen 173 WMWQIPSQA--LC----KVMSGHNSPCTCGEFIPD--G---------------------------------KRILTGYDD 211 (399)
T ss_pred EEEECCCcc--ee----eEecCCCCCcccccccCC--C---------------------------------ceEEEEecC
Confidence 999998852 22 111112556777776433 2 234555669
Q ss_pred CeEEEEEcCCCeEEEEec
Q 001853 761 GALEIFDVPNFNCVFTVD 778 (1004)
Q Consensus 761 g~l~I~sLp~~~~v~~~~ 778 (1004)
|+|.+|.+...++.+...
T Consensus 212 gti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ceEEEEecCCCceeEEec
Confidence 999999999988888866
No 59
>PTZ00421 coronin; Provisional
Probab=34.62 E-value=9.1e+02 Score=29.28 Aligned_cols=119 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred CccEEEEEE---cCCEEEEEEeCCeEEEEEecCCCceEeee-cccccccCCCceeEEEEeecCCCCcceecccccccccC
Q 001853 658 NSTVLSVSI---ADPYVLLGMSDGSIRLLVGDPSTCTVSVQ-TPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLST 733 (1004)
Q Consensus 658 ~~~I~~As~---~dpyvll~~~~g~I~~l~~d~~~~~l~~~-~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~ 733 (1004)
...|.+.++ .+.+++.+..|++|.+|.+...+..-... ....+......|.+++...+...
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~--------------- 139 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN--------------- 139 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC---------------
Q ss_pred ccccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCC
Q 001853 734 GVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQ 813 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1004)
+++.+..+|.+.||.+.+-+++.....-...
T Consensus 140 -------------------iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~------------------------------ 170 (493)
T PTZ00421 140 -------------------VLASAGADMVVNVWDVERGKAVEVIKCHSDQ------------------------------ 170 (493)
T ss_pred -------------------EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc------------------------------
Q ss_pred CCcccccccceEEEEEeecCCCCCCcEEEEEeeCCcEEEEEE
Q 001853 814 GRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1004)
Q Consensus 814 ~~~~~~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~ 855 (1004)
|..+.+..-| .+|+....||.|-+|.+
T Consensus 171 ----------V~sla~spdG-----~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 171 ----------ITSLEWNLDG-----SLLCTTSKDKKLNIIDP 197 (493)
T ss_pred ----------eEEEEEECCC-----CEEEEecCCCEEEEEEC
No 60
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=2.9e+02 Score=33.97 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCC
Q 001853 668 DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPL 747 (1004)
Q Consensus 668 dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1004)
.|+++.++-+|++.++..+.... +.++-+..-+-..+.|
T Consensus 25 ePw~la~LynG~V~IWnyetqtm----------------VksfeV~~~PvRa~kf------------------------- 63 (794)
T KOG0276|consen 25 EPWILAALYNGDVQIWNYETQTM----------------VKSFEVSEVPVRAAKF------------------------- 63 (794)
T ss_pred CceEEEeeecCeeEEEeccccee----------------eeeeeecccchhhhee-------------------------
Q ss_pred CCCcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceEEE
Q 001853 748 DQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVEL 827 (1004)
Q Consensus 748 ~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ei 827 (1004)
-....|+++..+++.+.||..-+++.|.+.+ .....|+.|
T Consensus 64 iaRknWiv~GsDD~~IrVfnynt~ekV~~Fe----------------------------------------AH~DyIR~i 103 (794)
T KOG0276|consen 64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFE----------------------------------------AHSDYIRSI 103 (794)
T ss_pred eeccceEEEecCCceEEEEecccceeeEEee----------------------------------------ccccceeee
Q ss_pred EEeecCCCCCCcEEEEEeeCCcEEE
Q 001853 828 AMQRWSAHHSRPFLFAILTDGTILC 852 (1004)
Q Consensus 828 ll~~lg~~~~~p~L~v~~~~g~l~i 852 (1004)
.++.-- ||++ ++.++++|
T Consensus 104 avHPt~-----P~vL--tsSDDm~i 121 (794)
T KOG0276|consen 104 AVHPTL-----PYVL--TSSDDMTI 121 (794)
T ss_pred eecCCC-----CeEE--ecCCccEE
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.52 E-value=6.7e+02 Score=27.39 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=88.1
Q ss_pred cEEEEEecCceEEEE-ecCceeEEecCCCccccCCeEEEEEeCCCcEEEEEecCcEEEEeCC----cceeEEeCCCCCCC
Q 001853 577 AYLIISLEARTMVLE-TADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS----YMTQDLSFGPSNSE 651 (1004)
Q Consensus 577 ~yLilS~~~~T~Vl~-~~~~l~ev~~~~~F~~~~~TI~ag~l~~~~~IvQVt~~~vrl~~~~----~~~q~~~~~~~~~e 651 (1004)
+.+.+=..+.-.|.+ ..+...+++ ...|+-+..-++-|.| ...+|+.|.. ..+|.+.-
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~Sgsf----------D~s~r~wDCRS~s~ePiQilde------ 143 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSF----------DSSVRLWDCRSRSFEPIQILDE------ 143 (307)
T ss_pred ceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccc----------cceeEEEEcccCCCCccchhhh------
Confidence 344444444444544 455666666 5666655555665555 3457778754 23555421
Q ss_pred CCCCCCCccEEEEEEcCCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCccee--------
Q 001853 652 SGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLR-------- 723 (1004)
Q Consensus 652 ~g~~~~~~~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~-------- 723 (1004)
. ...|.+..+++.-|+-...||++..|.+-..+..-.. + ..+|++.|+-+|.+- .+.
T Consensus 144 a-----~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy-----~---g~pit~vs~s~d~nc--~La~~l~stlr 208 (307)
T KOG0316|consen 144 A-----KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY-----F---GHPITSVSFSKDGNC--SLASSLDSTLR 208 (307)
T ss_pred h-----cCceeEEEecccEEEeeccCCcEEEEEeecceeehhh-----c---CCcceeEEecCCCCE--EEEeeccceee
Confidence 1 1238888889999999999999999988654321111 1 233554444333211 110
Q ss_pred ---ccccc-ccccCccc-cccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEE
Q 001853 724 ---KTSTD-AWLSTGVG-EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 724 ---~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
+.+.. -....|.. +..+- +--..+...-++.+.++|.+.+|+|-+-+.+-.
T Consensus 209 LlDk~tGklL~sYkGhkn~eykl--dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKL--DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred ecccchhHHHHHhcccccceeee--eeeecccceeEEeccCCceEEEEEeccceeeee
Confidence 00000 00000000 00000 001234556789999999999999988766554
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=32.76 E-value=5.6e+02 Score=26.28 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=19.2
Q ss_pred cEEEEEEcC--CEEEEEEeCCeEEEEEecCC
Q 001853 660 TVLSVSIAD--PYVLLGMSDGSIRLLVGDPS 688 (1004)
Q Consensus 660 ~I~~As~~d--pyvll~~~~g~I~~l~~d~~ 688 (1004)
.|.+..+.. .+++....++.|.+|.+...
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence 377777764 44444444999999988643
No 63
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=31.96 E-value=1.2e+03 Score=30.04 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=35.0
Q ss_pred cCcEEEEeCCcceeEEeCCCCCCCCCCCCCCccEEEEEE--cCCEEEEEEeCCeEEEEEecCCC
Q 001853 628 ERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDGSIRLLVGDPST 689 (1004)
Q Consensus 628 ~~~vrl~~~~~~~q~~~~~~~~~e~g~~~~~~~I~~As~--~dpyvll~~~~g~I~~l~~d~~~ 689 (1004)
..+|++++.....|+..+- | ....|.+.+. ++.+++++.-||.|.+|++++..
T Consensus 117 D~~vK~~~~~D~s~~~~lr------g---h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 117 DTAVKLLNLDDSSQEKVLR------G---HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred ceeEEEEeccccchheeec------c---cCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 4567777765433333221 1 1133777776 58899999999999999998653
No 64
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=30.94 E-value=82 Score=34.51 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=36.1
Q ss_pred CEEEEEeCCCCEEEEEEEECCceEeEEEEEec-----CCCcccceEEEEcCCeEEEEeeeCCeeEEEEe
Q 001853 375 DVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT-----NPSVLTSDITTIGNSLFFLGSRLGDSLLVQFT 438 (1004)
Q Consensus 375 ~~~Ll~~~~G~L~~L~l~~dgr~V~~l~l~~~-----g~~~~~S~l~~l~~g~lFvGS~~GDS~Ll~~~ 438 (1004)
+.++|.++...|..+ ..+|+-++.+.|..- ...+.|.-|+.-.+|.|||-|+ -.++|+|+
T Consensus 184 ~lliLS~es~~l~~~--d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE--pNlfy~f~ 248 (248)
T PF06977_consen 184 HLLILSDESRLLLEL--DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE--PNLFYRFE 248 (248)
T ss_dssp EEEEEETTTTEEEEE---TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET--TTEEEEEE
T ss_pred eEEEEECCCCeEEEE--CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC--CceEEEeC
Confidence 456777776666444 467777777777652 3457799999999999999998 34777763
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=29.66 E-value=7.2e+02 Score=27.62 Aligned_cols=66 Identities=8% Similarity=-0.009 Sum_probs=38.6
Q ss_pred eEEEEEeCCCcEEEEEe---cCcEEEEeCCc--ceeEEeCCCCCCCCCCCCCCccEEEEEEcCCEEEEEEe-----CCeE
Q 001853 611 TIAAGNLFGRRRVIQVF---ERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMS-----DGSI 680 (1004)
Q Consensus 611 TI~ag~l~~~~~IvQVt---~~~vrl~~~~~--~~q~~~~~~~~~e~g~~~~~~~I~~As~~dpyvll~~~-----~g~I 680 (1004)
+|.+..+...+ =.-|| .+.++|.|-+. ++-.|+.+ ++ .+.+.-+..+.+++++++ -+.|
T Consensus 54 avW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k~~-------~~---Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 54 AVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWKTN-------SP---VKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred eEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEeecC-------Ce---eEEEeeccCCcEEEEEehhhcCcceEE
Confidence 45555554332 11222 45678887652 45556542 22 556777778999998874 3467
Q ss_pred EEEEecC
Q 001853 681 RLLVGDP 687 (1004)
Q Consensus 681 ~~l~~d~ 687 (1004)
.+|.+..
T Consensus 123 ~~fdi~~ 129 (327)
T KOG0643|consen 123 SVFDIRD 129 (327)
T ss_pred EEEEccC
Confidence 7777743
No 66
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.10 E-value=2.8e+02 Score=31.88 Aligned_cols=70 Identities=17% Similarity=0.377 Sum_probs=50.3
Q ss_pred CCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCC
Q 001853 668 DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPL 747 (1004)
Q Consensus 668 dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1004)
.+++.....|++|.++.+....+++++... ..|....++
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-------dnwVr~~af---------------------------------- 342 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-------DNWVRGVAF---------------------------------- 342 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecc-------cceeeeeEE----------------------------------
Confidence 467777888999999999887766664421 224433222
Q ss_pred CCCcEEEEEEecCCeEEEEEcCCCeEEEEec
Q 001853 748 DQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1004)
Q Consensus 748 ~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~~ 778 (1004)
.....|++-|-+|++|.||+|.+.++.-..+
T Consensus 343 ~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 2235799999999999999999988766543
No 67
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.15 E-value=2.6e+02 Score=29.91 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=27.9
Q ss_pred cEEEEEEcCCEEEEEEeCCeEEEEEecCCCceE
Q 001853 660 TVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTV 692 (1004)
Q Consensus 660 ~I~~As~~dpyvll~~~~g~I~~l~~d~~~~~l 692 (1004)
.++...+++.|+++.+.+|.+.++.+......+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 378888999999999999999999998764433
No 68
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=27.73 E-value=61 Score=25.87 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=20.3
Q ss_pred cEEEEEEecCCeEEEEEcCCCeEEE
Q 001853 751 DIYSVVCYESGALEIFDVPNFNCVF 775 (1004)
Q Consensus 751 ~~~l~~~~~~g~l~I~sLp~~~~v~ 775 (1004)
...+++.+.+|.+.||++ +.+.+|
T Consensus 23 mdLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 23 MDLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred CCEEEEEECCCeEEEEEC-CCcCcc
Confidence 348899999999999999 777666
No 69
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=27.67 E-value=1.6e+03 Score=29.85 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=40.7
Q ss_pred cEEEEEECCCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCCeEEECCCCCEEEEEEecCe
Q 001853 131 DSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQ 200 (1004)
Q Consensus 131 D~Llv~~~~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~~~~ 200 (1004)
=..++-|+.+.++-++-+++.....-+++.||.. .++...|.|+-.|-..++.-+.++
T Consensus 299 ff~llqt~~GD~fk~tl~~d~d~v~el~lkYfDt------------vp~a~~L~I~k~GfLf~~sE~~n~ 356 (1205)
T KOG1898|consen 299 FFFLLQTEYGDLFKLTLEHDGDNVVELRLKYFDT------------VPCALQLCILKTGFLFVASEFGNH 356 (1205)
T ss_pred eEEEEEecCCceEEEEEecCCCcceeeeeehhcC------------CccceEEEEeccceEEEhhhccCc
Confidence 3566778888888888887777666677788733 233456788877877777766544
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=27.37 E-value=6.6e+02 Score=29.46 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=21.9
Q ss_pred cEEEEEEecCCeEEEEEcCCCeEEEEe
Q 001853 751 DIYSVVCYESGALEIFDVPNFNCVFTV 777 (1004)
Q Consensus 751 ~~~l~~~~~~g~l~I~sLp~~~~v~~~ 777 (1004)
+-|++....||+++||++-.-++.+..
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEe
Confidence 457788888999999999887776653
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=26.34 E-value=8.4e+02 Score=26.25 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=13.6
Q ss_pred EEEee-eeeeEeEEEecCCC
Q 001853 106 HYRLH-GNVESLAILSQGGA 124 (1004)
Q Consensus 106 e~~l~-G~I~~l~~vr~~~s 124 (1004)
|+.++ |+|.+|+-+.-+.+
T Consensus 131 e~nmhdgtirdl~fld~~~s 150 (350)
T KOG0641|consen 131 EFNMHDGTIRDLAFLDDPES 150 (350)
T ss_pred eeeecCCceeeeEEecCCCc
Confidence 45555 99999988765554
No 72
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=25.41 E-value=5.9e+02 Score=30.56 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=29.4
Q ss_pred cEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccc
Q 001853 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTH 786 (1004)
Q Consensus 751 ~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~ 786 (1004)
...||-|..+|.+.||.|.+..+|-+..+-..+-..
T Consensus 521 akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 521 AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 556 (705)
T ss_pred cceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence 458999999999999999999988877666555443
No 73
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=24.99 E-value=2.4e+02 Score=32.38 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=44.5
Q ss_pred CcEEEEEEecCCeEEEEEcCCCeEEEEecCcCccccccccccccccccccchhccCCCccccCCCCcccccccceEEEEE
Q 001853 750 GDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAM 829 (1004)
Q Consensus 750 ~~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill 829 (1004)
.+.|++....++++.||.|.+-++..++.+ ..+.++++.+
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltG----------------------------------------hi~~vr~vav 201 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTG----------------------------------------HIETVRGVAV 201 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecc----------------------------------------hhheeeeeee
Confidence 356888888999999999988666554321 1124566666
Q ss_pred eecCCCCCCcEEEEEeeCCcEEEEEE
Q 001853 830 QRWSAHHSRPFLFAILTDGTILCYQA 855 (1004)
Q Consensus 830 ~~lg~~~~~p~L~v~~~~g~l~iY~~ 855 (1004)
..- .||||....|++|-+|..
T Consensus 202 S~r-----HpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 202 SKR-----HPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ccc-----CceEEEecCCCeeEEEec
Confidence 532 499999999999999964
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=24.58 E-value=1e+03 Score=26.55 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=62.9
Q ss_pred cCCEEEEEEEEecccccccccCCccccccccccccccccEEEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEEC-CC
Q 001853 62 AANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFE-DA 140 (1004)
Q Consensus 62 k~n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~-~a 140 (1004)
..+.|.+|++..++ +|+++...+..|....|+. .+ ..+.|+++.. +.
T Consensus 10 ~~~~I~~~~~~~~g------------------------~l~~~~~~~~~~~~~~l~~-sp-------d~~~lyv~~~~~~ 57 (330)
T PRK11028 10 ESQQIHVWNLNHEG------------------------ALTLLQVVDVPGQVQPMVI-SP-------DKRHLYVGVRPEF 57 (330)
T ss_pred CCCCEEEEEECCCC------------------------ceeeeeEEecCCCCccEEE-CC-------CCCEEEEEECCCC
Confidence 35678999985333 5788877776666665532 21 4568887754 56
Q ss_pred eEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCCeEEECCCCCEEEEEEe-cCeEEEEEcc
Q 001853 141 KISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIILKAS 207 (1004)
Q Consensus 141 klsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~~Rca~l~~~-~~~L~ilP~~ 207 (1004)
.+.+++++ ++..+..+..+.. + ..+..+..||+||.+.+.-+ .+.+.++.+.
T Consensus 58 ~i~~~~~~-~~g~l~~~~~~~~----------~----~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 58 RVLSYRIA-DDGALTFAAESPL----------P----GSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred cEEEEEEC-CCCceEEeeeecC----------C----CCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 66666665 3455543321111 1 12347999999998887776 7888888774
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=24.06 E-value=1.1e+03 Score=26.78 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=56.4
Q ss_pred cEEEEEEEEeeeee-eEeEEEecCCCCCCCCccEEEEEE-CCCeEEEEEEeCCCCcEEEE-EeeeecCcchhcccCCccc
Q 001853 100 SLELVCHYRLHGNV-ESLAILSQGGADNSRRRDSIILAF-EDAKISVLEFDDSIHGLRIT-SMHCFESPEWLHLKRGRES 176 (1004)
Q Consensus 100 kL~lv~e~~l~G~I-~~l~~vr~~~s~~~~~~D~Llv~~-~~aklsile~d~~~~~l~Tv-Slh~~E~~~~~~~k~g~~~ 176 (1004)
+|+++.+.+..|.- ..++ +-+ ...+|+++- ..+.++++..+.. +.+... .+..++... ....|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~-~~~-------~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g----~~~~rq 141 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIA-VDP-------DGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSG----PNPDRQ 141 (345)
T ss_dssp EEEEEEEEEESSSCEEEEE-ECT-------TSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEE----SSTTTT
T ss_pred eeEEeeeeccCCCCcEEEE-Eec-------CCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCC----Cccccc
Confidence 68888888866553 2222 221 456777775 6899999999887 544443 233333221 111123
Q ss_pred ccCC-CeEEECCCCCEEEEEEe-cCeEEEEEccc
Q 001853 177 FARG-PLVKVDPQGRCGGVLVY-GLQMIILKASQ 208 (1004)
Q Consensus 177 ~~~~-~~l~VDP~~Rca~l~~~-~~~L~ilP~~~ 208 (1004)
..+. ..+..+|+||.+.+.-. .+.+.++-+..
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 2223 35789999998877555 77777766643
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=24.04 E-value=4.7e+02 Score=30.61 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=57.8
Q ss_pred EEEEEEEeeeeeeEeEEEecCCCCCCCCccEEEEEECCCeEEEEEEeCCCCcEEEEEeeeecCcchhcccCCcccccCCC
Q 001853 102 ELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGP 181 (1004)
Q Consensus 102 ~lv~e~~l~G~I~~l~~vr~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~l~TvSlh~~E~~~~~~~k~g~~~~~~~~ 181 (1004)
.++.+.++.|.|+++.... ++-.|+.++++-.+.++ |-.+.++. |.|-- .|++-..--.
T Consensus 333 ~~~~sv~~gg~vtSl~ls~--------~g~~lLsssRDdtl~vi--DlRt~eI~----~~~sA-------~g~k~asDwt 391 (459)
T KOG0288|consen 333 DKTRSVPLGGRVTSLDLSM--------DGLELLSSSRDDTLKVI--DLRTKEIR----QTFSA-------EGFKCASDWT 391 (459)
T ss_pred ceeeEeecCcceeeEeecc--------CCeEEeeecCCCceeee--ecccccEE----EEeec-------cccccccccc
Confidence 3577899999999987644 45577788888888876 33333333 66633 3443333346
Q ss_pred eEEECCCCCEEEEEEecCeEEEEEcc
Q 001853 182 LVKVDPQGRCGGVLVYGLQMIILKAS 207 (1004)
Q Consensus 182 ~l~VDP~~Rca~l~~~~~~L~ilP~~ 207 (1004)
.+..-|++++++-.-.++.+.|.-..
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEcc
Confidence 67888999999877778887776543
No 77
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.97 E-value=6e+02 Score=28.13 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=47.4
Q ss_pred EEEecceeEEEeeCCEEEEEeCCCCEEEEEEEECCceEeEEEEEecCCCcccceEEEEcCCeEEEEeeeCCeeEEEEee
Q 001853 361 SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTC 439 (1004)
Q Consensus 361 ~i~l~~~~~~~l~~~~~Ll~~~~G~L~~L~l~~dgr~V~~l~l~~~g~~~~~S~l~~l~~g~lFvGS~~GDS~Ll~~~~ 439 (1004)
..+.|++.. . =.++++|+-.+|-||.|.+.. |.....+ ...+ .+-.+..+-.+.|+++.||+.|+-+.+.+..
T Consensus 52 g~RiE~sa~-v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f--~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 52 GVRIECSAI-V-VGDFVVLGCYSGGLYFLCVKT-GSQIWNF--VILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CceeeeeeE-E-ECCEEEEEEccCcEEEEEecc-hhheeee--eehh-hhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 345566533 2 345699999999999999865 3323222 2222 2334455667899999999999877665543
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.46 E-value=4.6e+02 Score=33.02 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=54.6
Q ss_pred cEEEEEEc---CCEEEEEEeCCeEEEEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccc
Q 001853 660 TVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1004)
Q Consensus 660 ~I~~As~~---dpyvll~~~~g~I~~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~ 736 (1004)
.++++.++ |.|.+=..=||.|.++.+..... ..- ..+ ...|+|+|+..| |
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-v~W---~Dl---~~lITAvcy~Pd--G------------------ 463 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-VDW---NDL---RDLITAVCYSPD--G------------------ 463 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCee-Eee---hhh---hhhheeEEeccC--C------------------
Confidence 48888886 89999988999999999876421 111 111 345899998544 3
Q ss_pred cccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEE
Q 001853 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
.+.++.+=+|...+|.-.+++++-.
T Consensus 464 ---------------k~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 464 ---------------KGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ---------------ceEEEEEeccEEEEEEccCCeEEEe
Confidence 3677788899999999888886554
No 79
>PTZ00420 coronin; Provisional
Probab=23.41 E-value=1.5e+03 Score=28.10 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=48.1
Q ss_pred cEEEEEEc---CCEEEEEEeCCeEEEEEecCCCceEe-eecc-cccccCCCceeEEEEeecCCCCcceecccccccccCc
Q 001853 660 TVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVS-VQTP-AAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1004)
Q Consensus 660 ~I~~As~~---dpyvll~~~~g~I~~l~~d~~~~~l~-~~~~-~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~ 734 (1004)
.|.+++++ +.+++-+..||+|.+|.+...+.... +..+ ..+......|.+++..
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~--------------------- 134 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN--------------------- 134 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC---------------------
Confidence 37777775 35666777899999999865432111 0000 0111112334433321
Q ss_pred cccccCCCCCCCCCCCcEEEEEEecCCeEEEEEcCCCeEEEEe
Q 001853 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1004)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~~ 777 (1004)
+....+++.+..+|.+.||.+...+.++..
T Consensus 135 -------------P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 135 -------------PMNYYIMCSSGFDSFVNIWDIENEKRAFQI 164 (568)
T ss_pred -------------CCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 112345667778999999999887766654
No 80
>PTZ00420 coronin; Provisional
Probab=22.86 E-value=1.5e+03 Score=28.02 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=30.9
Q ss_pred cccccEEEeccCCCceEEEecCCCCCCCCcEEEEecCC-cEEEEECCCCCcc
Q 001853 939 FRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQG-ILKICQLPSGSTY 989 (1004)
Q Consensus 939 ~~~~l~~~~~~~~~~v~~f~~F~~~~~~~gfiy~~~~~-~lri~~lp~~~~~ 989 (1004)
..+.+|++-+.. +.+..++.|+....-+|+.++-..+ .++-|++-.-+..
T Consensus 283 GD~tIr~~e~~~-~~~~~l~~~~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl 333 (568)
T PTZ00420 283 GDGNCRYYQHSL-GSIRKVNEYKSCSPFRSFGFLPKQICDVYKCEIGRVYKN 333 (568)
T ss_pred CCCeEEEEEccC-CcEEeecccccCCCccceEEccccccCchhhhHhHHhhh
Confidence 345566666643 3677777888777777887776654 3555555554443
No 81
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.62 E-value=8.7e+02 Score=30.61 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=70.9
Q ss_pred eEEEEEeCCCcEEEEEecCcEEEEeCC--cceeEEeCCCCCCCCCCC-----CCC--ccEEEEEEcCCEEEEEEeCCeEE
Q 001853 611 TIAAGNLFGRRRVIQVFERGARILDGS--YMTQDLSFGPSNSESGSG-----SEN--STVLSVSIADPYVLLGMSDGSIR 681 (1004)
Q Consensus 611 TI~ag~l~~~~~IvQVt~~~vrl~~~~--~~~q~~~~~~~~~e~g~~-----~~~--~~I~~As~~dpyvll~~~~g~I~ 681 (1004)
-|+||.+.+- ..|+++||+--+..+. .-++.|.+. .|.. +.. ...++-|.|+-|++.+-++|.|.
T Consensus 529 RifaghlsDV-~cv~FHPNs~Y~aTGSsD~tVRlWDv~-----~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 529 RIFAGHLSDV-DCVSFHPNSNYVATGSSDRTVRLWDVS-----TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred hhhccccccc-ceEEECCcccccccCCCCceEEEEEcC-----CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 4888888876 6888888887776653 224555432 2210 111 23444555799999999999999
Q ss_pred EEEecCCCceEeeecccccccCCCceeEEEEeecCCCCcceecccccccccCccccccCCCCCCCCCCCcEEEEEEecCC
Q 001853 682 LLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESG 761 (1004)
Q Consensus 682 ~l~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 761 (1004)
+|.+.......++... ...|.++++-.| +..|++...+.
T Consensus 603 iWDl~~~~~v~~l~~H------t~ti~SlsFS~d-----------------------------------g~vLasgg~Dn 641 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGH------TGTIYSLSFSRD-----------------------------------GNVLASGGADN 641 (707)
T ss_pred EEEcCCCcchhhhhcc------cCceeEEEEecC-----------------------------------CCEEEecCCCC
Confidence 9999875432222111 333555544211 34678888999
Q ss_pred eEEEEEcCC
Q 001853 762 ALEIFDVPN 770 (1004)
Q Consensus 762 ~l~I~sLp~ 770 (1004)
++.+|++-.
T Consensus 642 sV~lWD~~~ 650 (707)
T KOG0263|consen 642 SVRLWDLTK 650 (707)
T ss_pred eEEEEEchh
Confidence 999997643
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=21.98 E-value=1.9e+02 Score=31.64 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=0.0
Q ss_pred eEEEecCCCCeEE----EEcccccEEEeccCCCceEEEecCCCCCCCCcEEEE--ecCCcEEEEECCCCCccccCccceE
Q 001853 924 QGFFLSGSRPCWC----MVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYV--TSQGILKICQLPSGSTYDNYWPVQK 997 (1004)
Q Consensus 924 sgVFv~G~~P~~i----~~~~~~l~~~~~~~~~~v~~f~~F~~~~~~~gfiy~--~~~~~lri~~lp~~~~~d~~wp~rk 997 (1004)
.++||||..=.|. |-.-..+-.|.-.-.|||+|.. =-|+|-+|+ .++|++||=|.-+.-.|. -|-.+|
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr-----FSPdGE~yAsGSEDGTirlWQt~~~~~~~-~~~~~~ 309 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR-----FSPDGELYASGSEDGTIRLWQTTPGKTYG-LWKCVK 309 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE-----ECCCCceeeccCCCceEEEEEecCCCchh-hccccC
Q ss_pred E
Q 001853 998 V 998 (1004)
Q Consensus 998 v 998 (1004)
+
T Consensus 310 ~ 310 (334)
T KOG0278|consen 310 P 310 (334)
T ss_pred h
No 83
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=21.72 E-value=8.3e+02 Score=28.33 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=45.2
Q ss_pred cEEEEEEEEeeeee--------eEeEEEecCCCCCCCCccEEEE-EECCCeEEEEEEeCCCCcEEEEEeeeecCcchhcc
Q 001853 100 SLELVCHYRLHGNV--------ESLAILSQGGADNSRRRDSIIL-AFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHL 170 (1004)
Q Consensus 100 kL~lv~e~~l~G~I--------~~l~~vr~~~s~~~~~~D~Llv-~~~~aklsile~d~~~~~l~TvSlh~~E~~~~~~~ 170 (1004)
.|+++...+.-+.. .+|-.- + .++..++ ..+.+++.++.|... ..+.+..++-
T Consensus 109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s--~------~~~~fVv~lkd~~~I~vVdy~d~-~~~~~~~i~~--------- 170 (369)
T PF02239_consen 109 TLEPVKTIPTGGMPVDGPESRVAAIVAS--P------GRPEFVVNLKDTGEIWVVDYSDP-KNLKVTTIKV--------- 170 (369)
T ss_dssp T--EEEEEE--EE-TTTS---EEEEEE---S------SSSEEEEEETTTTEEEEEETTTS-SCEEEEEEE----------
T ss_pred cccceeecccccccccccCCCceeEEec--C------CCCEEEEEEccCCeEEEEEeccc-cccceeeecc---------
Confidence 58888888876543 333221 1 3444444 455699999987765 3343332221
Q ss_pred cCCcccccCCCeEEECCCCCEEEEEEe-cCeEEEEEc
Q 001853 171 KRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIILKA 206 (1004)
Q Consensus 171 k~g~~~~~~~~~l~VDP~~Rca~l~~~-~~~L~ilP~ 206 (1004)
|. ...-...||.+|+.++.+. .++++++-.
T Consensus 171 --g~----~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 171 --GR----FPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp ---T----TEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred --cc----cccccccCcccceeeecccccceeEEEee
Confidence 11 1123688999999888777 788888754
No 84
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=21.69 E-value=4.6e+02 Score=31.96 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=25.4
Q ss_pred cEEEEEEecCCeEEEEEcCCCeEEEEecCc
Q 001853 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKF 780 (1004)
Q Consensus 751 ~~~l~~~~~~g~l~I~sLp~~~~v~~~~~~ 780 (1004)
..++|.++.|+.|+||+|.+.+++++.+-+
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 347889999999999999999998886544
No 85
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.26 E-value=1.1e+03 Score=27.64 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=24.9
Q ss_pred ccEEEEEEcCCEEEEEEeCCeEEEEEecC
Q 001853 659 STVLSVSIADPYVLLGMSDGSIRLLVGDP 687 (1004)
Q Consensus 659 ~~I~~As~~dpyvll~~~~g~I~~l~~d~ 687 (1004)
..|..-.-.|..++.+.++|.+.++....
T Consensus 106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 106 KSIKGLKLADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred ccccchhhcCCEEEEEecCCcEEEEeccC
Confidence 45888888899999999999999998764
Done!