Query 001853
Match_columns 1004
No_of_seqs 207 out of 560
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:30:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001853.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1150-1153//hhsearch_pdb/001853hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 1.0 1 1 932.0 85.5 689 1-1002 19-737 (1158)
2 4gqb_B Methylosome protein 50; 1.0 1 1 19.8 17.0 21 752-772 271-291 (344)
3 3gre_A Serine/threonine-protei 1.0 1 1 18.4 19.8 170 622-856 184-358 (437)
4 4h5i_A Guanine nucleotide-exch 1.0 1 1 17.6 22.2 24 753-776 283-306 (365)
5 2ovr_B FBW7, F-BOX/WD repeat p 1.0 1 1 17.1 35.5 30 660-689 321-350 (445)
6 3amr_A 3-phytase; beta-propell 1.0 1 1 16.6 12.7 17 752-768 245-261 (355)
7 3mmy_A MRNA export factor; mRN 1.0 1 1 16.4 23.5 25 752-776 286-310 (368)
8 1gxr_A ESG1, transducin-like e 1.0 1 1 16.3 31.3 22 753-774 279-300 (337)
9 4aez_A CDC20, WD repeat-contai 1.0 1 1 15.6 33.6 18 839-856 362-379 (401)
10 3k26_A Polycomb protein EED; W 1.0 1 1 15.3 24.9 27 661-687 234-260 (366)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=1.00 E-value=1 Score=931.96 Aligned_cols=689 Identities=18% Similarity=0.305 Sum_probs=561.6
Q ss_pred CCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCCCC
Q ss_conf 93020122138870005899987358889898864433221123688779999988199982887999999860466534
Q 001853 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1004)
Q Consensus 1 m~~~~~~~l~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~~~~~ 80 (1004)
|+|+|+.++|+||+|+||++|||++++. +||||||+|+||||++.++
T Consensus 19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~---------------------------~~Lvvak~~~Lel~~~~~~------ 65 (1158)
T 3ei3_A 19 MSYNYVVTAQKPTAVNGCVTGHFTSAED---------------------------LNLLIAKNTRLEIYVVTAE------ 65 (1158)
T ss_dssp CCCEEEEEEECCCSCCEEEEECSSCSSC---------------------------CEEEEEETTEEEEEEEETT------
T ss_pred CCEEEEEEEECCCHHHEEEEEECCCCCC---------------------------CEEEEECCCEEEEEEECCC------
T ss_conf 1089999866898565899998589996---------------------------5899943999999988656------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEEECCCCC--EEEEE
Q ss_conf 5687632212002555423089999998433454758981599999998439999978780999999689995--88987
Q 001853 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHG--LRITS 158 (1004)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~kL~lv~~~~l~G~I~~l~~ir~~~s~~~~~~D~Llv~~~~aklsile~d~~~~~--l~TiS 158 (1004)
+|++++++++||+|++|+++|+.++ ++|+|+|+|+++|+++|+||++++. +.|.+
T Consensus 66 -------------------~L~~v~~~~l~G~I~~l~~~r~~g~----~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~ 122 (1158)
T 3ei3_A 66 -------------------GLRPVKEVGMYGKIAVMELFRPKGE----SKDLLFILTAKYNACILEYKQSGESIDIITRA 122 (1158)
T ss_dssp -------------------EEEEEEEEECSSCEEEEEEECCTTC----SSCEEEEEETTCEEEEEEEEC-CCCCEEEEEE
T ss_pred -------------------CEEEEEEEECCCEEEEEEEECCCCC----CCEEEEEEECCCEEEEEEECCCCCCEEEEEEE
T ss_conf -------------------5699999983337778888868999----84099999177609999985888815689996
Q ss_pred EEEECCCCHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 55411731000147862125899099899997899999268599997435999998888887899986521000099980
Q 001853 159 MHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINL 238 (1004)
Q Consensus 159 lh~~E~~~~~~~k~g~~~~~~~~~l~VDP~gRca~l~~~~~~L~iLP~~~~~~~l~~~d~~~~~~~~~~~~~~~s~~i~l 238 (1004)
.|.+++. .| ++..++++++|||.|||+++.+|+++++|+|+.+.+. ...++.+++
T Consensus 123 ~~~~~~~------~~-r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~------------------~l~~~~~~l 177 (1158)
T 3ei3_A 123 HGNVQDR------IG-RPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK------------------ELKAFNIRL 177 (1158)
T ss_dssp EEECCCS------SC-CBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCT------------------TCCCEEEEC
T ss_pred CCCCCCC------CC-CCCCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCC------------------CCCCCCCCC
T ss_conf 2445567------56-4577788799968889999993159899999438866------------------662202156
Q ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCC-CCCCEEEECCCCCCCCEEEEECCC
Q ss_conf 1367886036997418987659999972687456302344568999984211220-023100102679777589981599
Q 001853 239 RDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLK-QHPLIWSAMNLPHDAYKLLAVPSP 317 (1004)
Q Consensus 239 ~~ldi~~V~D~~FL~gy~ePtlaiL~e~~~tw~gr~~~r~dt~~~~~~sLn~~~k-~~~~i~s~~~LP~d~~~LipvP~p 317 (1004)
. +.+|+|++|||||+|||||+||++.. | |+.++ ++||+..+ ..+.+|+.++||++|++|||||+|
T Consensus 178 ~---~~~v~d~~fL~g~~~P~~A~Ly~d~~---~----~~l~~----y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~ 243 (1158)
T 3ei3_A 178 E---ELHVIDVKFLYGCQAPTICFVYQDPQ---G----RHVKT----YEVSLREKEFNKGPWKQENVEAEASMVIAVPEP 243 (1158)
T ss_dssp S---CCCEEEEEECSSCSSCEEEEEEEETT---E----EEEEE----EEEETTTTEEEECSSCCEEECTTCCEEEECCTT
T ss_pred C---CCEEEEEEEECCCCCCEEEEEEECCC---C----CEEEE----EEEECCCCEEEECCCCCCCCCCCCCEEEECCCC
T ss_conf 5---43289999965999868999998899---9----89999----999767770544244124599997889997888
Q ss_pred CCEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEE--CCEEEEEECCCCEEEEEEEECC
Q ss_conf 87599993685999817970257604333235887678787508990540479840--8789999089998999999789
Q 001853 318 IGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQ--NDVALLSTKTGDLVLLTVVYDG 395 (1004)
Q Consensus 318 lGGvLVig~n~Iiy~dq~~~~~i~vN~~~~~~t~~~~~~~~~~~i~l~~~~~~~l~--~~~~LL~~~~G~L~~L~l~~dg 395 (1004)
+||+||+|+|.|+|+|+.+...++. |..+++ .+. +|+..+ +.++||++++|+||+|+|..|+
T Consensus 244 ~gGvlv~g~n~i~y~~~~~~~~~~~----------p~~~~~--~i~----~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~ 307 (1158)
T 3ei3_A 244 FGGAIIIGQESITYHNGDKYLAIAP----------PIIKQS--TIV----CHNRVDPNGSRYLLGDMEGRLFMLLLEKEE 307 (1158)
T ss_dssp TCCEEEECSSCEEEEETTEEEEECC----------GGGGGS--CEE----EEEECSTTSSEEEEEETTCEEEEEEEEEEC
T ss_pred CCEEEEEECCEEEEECCCCCEEEEC----------CCCCCC--EEE----EEEEEECCCCEEEEEECCCCEEEEEEEECC
T ss_conf 8569999788899991997558726----------645786--589----999993699789999599999999999717
Q ss_pred C-----EEEEEEEEECCCCCCCCEEEEECCCEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4-----57678999659975451079976983999933179469999417886435689864457754578631001368
Q 001853 396 R-----VVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRS 470 (1004)
Q Consensus 396 r-----~V~~l~l~~~g~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1004)
+ .|++++++++|++++|+||++|++|+||+||++|||+|+||....
T Consensus 308 ~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~----------------------------- 358 (1158)
T 3ei3_A 308 QMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDS----------------------------- 358 (1158)
T ss_dssp -----CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSC-----------------------------
T ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCEEEEEECCC-----------------------------
T ss_conf 756752589989998588457518999889879999962783899983389-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC----CCCEECCCCCEEEE-----
Q ss_conf 751000245642112235778886446640339995221146775432212123689----87010357860799-----
Q 001853 471 SSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINAD----ASATGISKQSNYEL----- 541 (1004)
Q Consensus 471 ~~~~~~~~~d~~~~~ly~~~~~~~~~~~~~~~l~v~Dsl~nigPI~D~~vg~~~~~~----~~~sG~g~~GsL~v----- 541 (1004)
++ + .. .++++|+++|+|||.||++++..... .+|||+|++|+|++
T Consensus 359 -----~~--~------------------~~-~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi 412 (1158)
T 3ei3_A 359 -----NE--Q------------------GS-YVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGI 412 (1158)
T ss_dssp -----CT--T------------------SC-CEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESB
T ss_pred -----CC--C------------------CC-EEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf -----98--6------------------45-1774732157677116999716778987099998769997589982488
Q ss_pred -------EECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE-CCCEEEEECCCCCCCCCCEEE
Q ss_conf -------918995576798641899988876433335756640999991273289981-684447744778212577089
Q 001853 542 -------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLET-ADLLTEVTESVDYFVQGRTIA 613 (1004)
Q Consensus 542 -------~~lpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~-g~~leev~~~~~F~~~~~TI~ 613 (1004)
++|||++++|+++.. .++++|+|||+|+.++|+||++ +++++|++ .+||.++++||+
T Consensus 413 ~~~~~~~~~l~gv~~iWtl~~~--------------~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~-~~gf~~~~~TL~ 477 (1158)
T 3ei3_A 413 GIHEHASIDLPGIKGLWPLRSD--------------PNRETDDTLVLSFVGQTRVLMLNGEEVEETE-LMGFVDDQQTFF 477 (1158)
T ss_dssp CEEEEEEECCCSCCEEEEECCC--------------SSCSSCCEEEEEETTEEEEEEEETTEEEEEC-CTTCCSSSCEEE
T ss_pred CEEEEEEECCCCCCEEEEEEEC--------------CCCCCCCEEEEECCCCEEEEEEECCCCCCCC-CCCCCCCCCCEE
T ss_conf 7799896059985579997606--------------7777788999978897699997077545210-155438898199
Q ss_pred EEEECCCCEEEEEECCCEEEEECCC--CEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEECCCCCE
Q ss_conf 9970899689999469499993996--31698589999999998888639999973998999990992999995699714
Q 001853 614 AGNLFGRRRVIQVFERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT 691 (1004)
Q Consensus 614 ag~l~~~~~IvQVt~~~vrl~~~~~--~~q~~~~~~~~~e~g~~~~~~~Iv~Asi~dpyvll~~~dg~I~ll~~d~~~~~ 691 (1004)
|++++++ +|||||+++||+++.+. ++++|+++ .+..|++|+++++||+++ +++++++|++++.. +
T Consensus 478 ~~~l~~~-~ivQVt~~~Irli~~~~~~~~~~w~~p----------~~~~I~~As~n~~~vvva-~g~~l~~fel~~~~-L 544 (1158)
T 3ei3_A 478 CGNVAHQ-QLIQITSASVRLVSQEPKALVSEWKEP----------QAKNISVASCNSSQVVVA-VGRALYYLQIHPQE-L 544 (1158)
T ss_dssp EEEETTT-EEEEEESSCEEEEESSSCCEEEEECCT----------TCCCCCEEEECSSEEEEE-ETTEEEEEEEETTE-E
T ss_pred EEECCCC-EEEEEECCEEEEEECCCCEEEEEEECC----------CCCEEEEEEECCCEEEEE-ECCEEEEEEEECCC-E
T ss_conf 9995898-599990697999978888088999889----------998899999579879999-79989999963894-2
Q ss_pred EEEECCCCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 76405632236998413988744079985100134543445763333579999999999599999925973999975998
Q 001853 692 VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNF 771 (1004)
Q Consensus 692 l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~ 771 (1004)
.+....++ +..++++++ ...+ .......+.++++|.+++++||+||++
T Consensus 545 ~~~~~~~l----~~evscl~i--~~~~--------------------------~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 545 RQISHTEM----EHEVACLDI--TPLG--------------------------DSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp EEEEEEEC----SSCEEEEEC--CCCS--------------------------SSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCC----CCCEEEEEE--ECCC--------------------------CCCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 46123578----981589992--0688--------------------------875446679999888988999987998
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEE
Q ss_conf 38999457676632111121101134520001578743667887555666645799995338888873999995089299
Q 001853 772 NCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTIL 851 (1004)
Q Consensus 772 ~~v~~~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~ 851 (1004)
+.++... ++ ....+++|+++.++ .+|||++.+.||.++
T Consensus 593 ~~~~~~~-L~--------------------------------------~~~~p~si~l~~~~---~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 593 ELLHKEM-LG--------------------------------------GEIIPRSILMTTFE---SSHYLLCALGDGALF 630 (1158)
T ss_dssp CEEEEEE-CC--------------------------------------SSCCEEEEEEEEET---TEEEEEEEETTSEEE
T ss_pred CEEEEEE-CC--------------------------------------CCCCCCEEEEEEEC---CCCEEEEEECCCEEE
T ss_conf 7689998-89--------------------------------------99988479999838---976899990798699
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECC
Q ss_conf 9997752599999889999765454423443334454245996-158867988899998762459901668821899549
Q 001853 852 CYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSR-TPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSG 930 (1004)
Q Consensus 852 iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrf~K-v~~~~~~~~~~~~~~~~~~l~~f~~i~g~sgVF~~G 930 (1004)
.|+.. .. .| .+...| .. +|.++.+|++|++. |.++||++|
T Consensus 631 ~~~~d---~~------------tg-------------~l~d~r~~~----------LG~~pv~L~~~~~~-~~~~V~a~s 671 (1158)
T 3ei3_A 631 YFGLN---IE------------TG-------------LLSDRKKVT----------LGTQPTVLRTFRSL-STTNVFACS 671 (1158)
T ss_dssp EEEEC---TT------------TC-------------CEEEEEEEE----------CCSSCCEEEEEESS-SCEEEEEES
T ss_pred EEEEC---CC------------CC-------------CCCCCEEEE----------CCCCCEEEEEEEEC-CCEEEEEEC
T ss_conf 99972---78------------87-------------416641688----------07874399999628-933699977
Q ss_pred CCCEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 998589971542199840579744898217789999928999667927999879999665683113775322
Q 001853 931 SRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVVFFL 1002 (1004)
Q Consensus 931 ~~P~~i~~~~~~l~~~~~~~~~~v~~f~~f~~~~c~~gfiy~~~~g~lri~~lp~~~~~d~~wpvrkvpl~~ 1002 (1004)
++|+||++++++++++|++.+ ++.++|+||+++||+||+++++++ +|||+++.. ..|++|+|||+.
T Consensus 672 ~rp~liy~~~~~l~~s~l~~~-~v~~~~~F~se~~~~g~v~~~~~~-LrI~~i~~~----~~~~~~~ipL~~ 737 (1158)
T 3ei3_A 672 DRPTVIYSSNHKLVFSNVNLK-EVNYMCPLNSDGYPDSLALANNST-LTIGTIDEI----QKLHIRTVPLYE 737 (1158)
T ss_dssp SSCEEEEESSSSEEEEEBSSS-CCCEEEEECCSSSTTEEEEECSSC-EEEEEECCS----SSEEEEEEECSS
T ss_pred CCCEEEEECCCCEEEECCCHH-HHCEEECCCCCCCCCCEEEECCCC-EEEEEECCC----CCEEEEEEECCC
T ss_conf 997799972890677024757-815670447123898499993895-699995665----770589986888
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.78 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=12.8
Q ss_pred EEEEEEECCCEEEEEECCCCE
Q ss_conf 999999259739999759983
Q 001853 752 IYSVVCYESGALEIFDVPNFN 772 (1004)
Q Consensus 752 ~~l~~~~~~g~l~I~sLp~~~ 772 (1004)
.+++.+..+|.+.||.+..-+
T Consensus 271 ~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 271 PFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp CCEEEEETTSCEEEECTTCCE
T ss_pred EEEEEEECCCEEEEEECCCCC
T ss_conf 099999389949999999996
No 3
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=18.39 Aligned_cols=170 Identities=11% Similarity=0.062 Sum_probs=88.4
Q ss_pred EEEEEEC-CCEEEEECCC--CEEEEECCCCCCCCCCCCCCCCEEEEEE--CCCEEEEEEECCEEEEEEECCCCCEEEEEC
Q ss_conf 8999946-9499993996--3169858999999999888863999997--399899999099299999569971476405
Q 001853 622 RVIQVFE-RGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQT 696 (1004)
Q Consensus 622 ~IvQVt~-~~vrl~~~~~--~~q~~~~~~~~~e~g~~~~~~~Iv~Asi--~dpyvll~~~dg~I~ll~~d~~~~~l~~~~ 696 (1004)
.++-... ..|++++... .++.+..+ . ....|.+.++ ...+++....||.|.++.+..... +....
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~-----h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 253 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENS----P-----RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL-IRSWS 253 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECC----G-----GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-EEEEB
T ss_pred EEEEEECCCEEEEEECCCCEEEEEECCC----C-----CCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCE-EEEEE
T ss_conf 8999958984999967788264797458----8-----789548999889988999986898499997677637-88885
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 63223699841398874407998510013454344576333357999999999959999992597399997599838999
Q 001853 697 PAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 697 ~~~~~~~~~~i~~~~l~~d~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
. .+ ...|.++++.... .....+++....+|.+.||.+.+.+++..
T Consensus 254 ~--~~--~~~v~~~~~~~~~-------------------------------s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 254 F--GD--HAPITHVEVCQFY-------------------------------GKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp C--TT--CEEEEEEEECTTT-------------------------------CTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred C--CC--CCCEEEEEECCCC-------------------------------CCCCCEEEEECCCCCEEEEECCCCCEEEE
T ss_conf 1--89--9866788861355-------------------------------88854999974898189998478808899
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 45767663211112110113452000157874366788755566664579999533888887399999508929999977
Q 001853 777 VDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAY 856 (1004)
Q Consensus 777 ~~~~~~~~~~L~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eill~~lg~~~~~p~L~v~~~~g~l~iY~~~ 856 (1004)
..+-...+..+.- . +.++. + +... .........|..+.+. . ..+|+..-.||.|.+|...
T Consensus 299 ~~~~~~~~~~~~~--~----~~~~~-l----~~~~---~~~~~~~~~v~~l~~~--~----~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 299 FINSDEQPSMEHF--L----PIEKG-L----EELN---FCGIRSLNALSTISVS--N----DKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp EESSSSCCCGGGG--S----CBCSS-G----GGCC---CCCCCSGGGGCCEEEE--T----TEEEEEEGGGTEEEEEETT
T ss_pred EECCCCCCCCCEE--C----CCCCC-C----CCCE---ECCCCCCCCEEEEEEC--C----CEEEEECCCCCEEEEEECC
T ss_conf 9858889751100--4----12044-3----1000---0244467833799987--9----6699963899749999799
No 4
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=1.00 E-value=1 Score=17.61 Aligned_cols=24 Identities=4% Similarity=0.203 Sum_probs=12.8
Q ss_pred EEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 999992597399997599838999
Q 001853 753 YSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 753 ~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
+++....+|.+.||.+.+.+++..
T Consensus 283 ~lasgs~D~~V~iwd~~~~~~~~~ 306 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLSMSKI 306 (365)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE
T ss_pred CEEEECCCCEEEEEECCCCCEEEE
T ss_conf 359984899899999999949788
No 5
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=1.00 E-value=1 Score=17.07 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=18.7
Q ss_pred CEEEEEECCCEEEEEEECCEEEEEEECCCC
Q ss_conf 399999739989999909929999956997
Q 001853 660 TVLSVSIADPYVLLGMSDGSIRLLVGDPST 689 (1004)
Q Consensus 660 ~Iv~Asi~dpyvll~~~dg~I~ll~~d~~~ 689 (1004)
.+.+.+..+.+++....||.|.++.+....
T Consensus 321 ~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 321 LTSGMELKDNILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred CEEEEEEECCEEEEEECCCEEEEEECCCCC
T ss_conf 179999719999999289909999899994
No 6
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=1.00 E-value=1 Score=16.56 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=8.2
Q ss_pred EEEEEEECCCEEEEEEC
Q ss_conf 99999925973999975
Q 001853 752 IYSVVCYESGALEIFDV 768 (1004)
Q Consensus 752 ~~l~~~~~~g~l~I~sL 768 (1004)
++++.+..+.++.+|..
T Consensus 245 yLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEEGGGTEEEEEES
T ss_pred EEEEECCCCCEEEEEEC
T ss_conf 99999089998999977
No 7
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=16.40 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=15.5
Q ss_pred EEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 9999992597399997599838999
Q 001853 752 IYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 752 ~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
.+++.+..+|.+.||++.+.+++..
T Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 286 GTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp CCEEEEETTSCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 9899982498499998997767888
No 8
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=1.00 E-value=1 Score=16.31 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=11.4
Q ss_pred EEEEEECCCEEEEEECCCCEEE
Q ss_conf 9999925973999975998389
Q 001853 753 YSVVCYESGALEIFDVPNFNCV 774 (1004)
Q Consensus 753 ~l~~~~~~g~l~I~sLp~~~~v 774 (1004)
+++....+|.+.||.+.+.+.+
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEECCCCCEEEEECCCCEEE
T ss_conf 8998338995899998899078
No 9
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=15.57 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=10.3
Q ss_pred CEEEEEEECCCEEEEEEE
Q ss_conf 399999508929999977
Q 001853 839 PFLFAILTDGTILCYQAY 856 (1004)
Q Consensus 839 p~L~v~~~~g~l~iY~~~ 856 (1004)
.+|+....||.|.+|+..
T Consensus 362 ~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 362 RILSTAASDENLKFWRVY 379 (401)
T ss_dssp SEEEEECTTSEEEEEECC
T ss_pred CEEEEEECCCCEEEEECC
T ss_conf 989999289718999887
No 10
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=1.00 E-value=1 Score=15.33 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=11.8
Q ss_pred EEEEEECCCEEEEEEECCEEEEEEECC
Q ss_conf 999997399899999099299999569
Q 001853 661 VLSVSIADPYVLLGMSDGSIRLLVGDP 687 (1004)
Q Consensus 661 Iv~Asi~dpyvll~~~dg~I~ll~~d~ 687 (1004)
|.+.++.+.+++....||.|.++....
T Consensus 234 v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 234 VDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred EEEEEECCCEEEEEECCCEEEEEECCC
T ss_conf 799997698799996699799986787
Done!