Query 001853
Match_columns 1004
No_of_seqs 207 out of 560
Neff 7.2
Searched_HMMs 13730
Date Tue Mar 26 16:39:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001853.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1150-1153//hhsearch_scop/001853hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nr0a2 b.69.4.1 (A:313-611) A 67.9 2.1 0.00016 16.4 22.7 20 668-687 191-210 (299)
2 d1gxra_ b.69.4.1 (A:) Groucho/ 60.9 2.9 0.00021 15.6 33.5 74 661-776 227-302 (337)
3 d1tbga_ b.69.4.1 (A:) beta1-su 32.0 8.5 0.00062 12.8 24.1 22 753-774 240-261 (340)
4 d1erja_ b.69.4.1 (A:) Tup1, C- 23.0 12 0.0009 11.8 28.8 21 753-773 219-239 (388)
5 d1h6la_ b.68.3.1 (A:) Thermost 13.6 21 0.0015 10.4 11.7 18 751-768 244-261 (353)
6 d1jmxb_ b.69.2.2 (B:) Quinohem 13.5 21 0.0015 10.4 8.8 60 129-204 7-67 (346)
7 d1yfqa_ b.69.4.2 (A:) Cell cyc 12.9 21 0.0016 10.3 11.4 26 752-777 264-289 (342)
8 d1k8kc_ b.69.4.1 (C:) Arp2/3 c 12.8 22 0.0016 10.3 18.4 105 56-208 20-126 (371)
9 d1shyb1 b.69.12.1 (B:40-515) H 11.2 24 0.0018 10.0 4.1 18 319-336 21-38 (476)
10 d1pgua2 b.69.4.1 (A:327-613) A 9.9 29 0.0021 9.5 20.6 20 668-687 174-193 (287)
No 1
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=67.90 E-value=2.1 Score=16.41 Aligned_cols=20 Identities=0% Similarity=-0.056 Sum_probs=9.1
Q ss_pred CCEEEEEEECCEEEEEEECC
Q ss_conf 99899999099299999569
Q 001853 668 DPYVLLGMSDGSIRLLVGDP 687 (1004)
Q Consensus 668 dpyvll~~~dg~I~ll~~d~ 687 (1004)
..+++....++.|.++....
T Consensus 191 ~~~l~~~~~d~~i~~~~~~~ 210 (299)
T d1nr0a2 191 GAFLVATDQSRKVIPYSVAN 210 (299)
T ss_dssp SSEEEEEETTSCEEEEEGGG
T ss_pred CCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111
No 2
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.90 E-value=2.9 Score=15.61 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=41.1
Q ss_pred EEEEEE--CCCEEEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 999997--399899999099299999569971476405632236998413988744079985100134543445763333
Q 001853 661 VLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1004)
Q Consensus 661 Iv~Asi--~dpyvll~~~dg~I~ll~~d~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~f~~~~~~~~~~~~~~~~ 738 (1004)
|.+..+ .+.+++....||.|.++.+..... .... .+ ...|.++++ ..
T Consensus 227 i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~----~~--~~~i~~v~~--s~---------------------- 275 (337)
T d1gxra_ 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLH----LH--ESCVLSLKF--AY---------------------- 275 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEEC----CC--SSCEEEEEE--CT----------------------
T ss_pred EEEEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCC----CC--CCCCCEEEE--CC----------------------
T ss_conf 57999715303000000256421111111110-0001----24--565416999--89----------------------
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 57999999999959999992597399997599838999
Q 001853 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1004)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~g~l~I~sLp~~~~v~~ 776 (1004)
...+++.+..+|.+.||++++.+++++
T Consensus 276 -----------~g~~l~s~s~Dg~i~iwd~~~~~~~~~ 302 (337)
T d1gxra_ 276 -----------CGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp -----------TSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred -----------CCCEEEEEECCCEEEEEECCCCCEEEE
T ss_conf -----------999999994899699998999979999
No 3
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Probab=31.97 E-value=8.5 Score=12.77 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=10.2
Q ss_pred EEEEEECCCEEEEEECCCCEEE
Q ss_conf 9999925973999975998389
Q 001853 753 YSVVCYESGALEIFDVPNFNCV 774 (1004)
Q Consensus 753 ~l~~~~~~g~l~I~sLp~~~~v 774 (1004)
+++.+..+|.+.+|.+...+.+
T Consensus 240 ~l~s~s~d~~i~~~~~~~~~~~ 261 (340)
T d1tbga_ 240 AFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEECCCEEEEEEECCCCCC
T ss_conf 9999969996999752122111
No 4
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.96 E-value=12 Score=11.78 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=8.4
Q ss_pred EEEEEECCCEEEEEECCCCEE
Q ss_conf 999992597399997599838
Q 001853 753 YSVVCYESGALEIFDVPNFNC 773 (1004)
Q Consensus 753 ~l~~~~~~g~l~I~sLp~~~~ 773 (1004)
+++....+|.+.+|.+.+.+.
T Consensus 219 ~l~~~~~d~~i~i~~~~~~~~ 239 (388)
T d1erja_ 219 YIAAGSLDRAVRVWDSETGFL 239 (388)
T ss_dssp EEEEEETTSCEEEEETTTCCE
T ss_pred EEEEECCCCEEEEEECCCCCC
T ss_conf 589973898199963455730
No 5
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=13.59 E-value=21 Score=10.44 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=10.0
Q ss_pred CEEEEEEECCCEEEEEEC
Q ss_conf 599999925973999975
Q 001853 751 DIYSVVCYESGALEIFDV 768 (1004)
Q Consensus 751 ~~~l~~~~~~g~l~I~sL 768 (1004)
.+|++--..+.++.||..
T Consensus 244 GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 244 GYLLASSQGNSSYAIYER 261 (353)
T ss_dssp EEEEEEEGGGTEEEEEES
T ss_pred EEEEEECCCCCEEEEEEC
T ss_conf 599997379976999956
No 6
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=13.48 E-value=21 Score=10.42 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=32.1
Q ss_pred CCCEEEEEECCCEEEEEEEECCCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCEEEECCCCCEEEEEEE-CCEEEEE
Q ss_conf 843999997878099999968999588987554117310001478621258990998999978999992-6859999
Q 001853 129 RRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIIL 204 (1004)
Q Consensus 129 ~~D~Llv~~~~aklsile~d~~~~~l~TiSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~gRca~l~~~-~~~L~iL 204 (1004)
+.++|+++.++.++.+ ||..++++... ..+ + .+. .+.-+.+.|.||.+.+... .+.+.++
T Consensus 7 ~~~~l~~~~~~~~v~v--~D~~t~~~~~t--~~~--~------~~~----~p~~l~~spDG~~l~v~~~~~~~v~~~ 67 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHV--VDVASDTVYKS--CVM--P------DKF----GPGTAMMAPDNRTAYVLNNHYGDIYGI 67 (346)
T ss_dssp TCEEEEEEETTTEEEE--EETTTTEEEEE--EEC--S------SCC----SSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEECCCCEEEE--EECCCCCEEEE--EEC--C------CCC----CCCEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 9969999869997999--99999989999--994--8------999----704599978989999997899939999
No 7
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.91 E-value=21 Score=10.31 Aligned_cols=26 Identities=4% Similarity=0.102 Sum_probs=19.5
Q ss_pred EEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 99999925973999975998389994
Q 001853 752 IYSVVCYESGALEIFDVPNFNCVFTV 777 (1004)
Q Consensus 752 ~~l~~~~~~g~l~I~sLp~~~~v~~~ 777 (1004)
.+++.+..+|.+.||.+.+.+++.+.
T Consensus 264 ~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 264 KFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp CCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 47999879998999999989498870
No 8
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.77 E-value=22 Score=10.29 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=60.0
Q ss_pred CEEEEECC-CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-EEEEEEEEEECCCCCCCCCCCEE
Q ss_conf 81999828-87999999860466534568763221200255542308999999843-34547589815999999984399
Q 001853 56 PNLVVTAA-NVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLH-GNVESLAILSQGGADNSRRRDSI 133 (1004)
Q Consensus 56 ~nLVvak~-n~LeIy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~lv~~~~l~-G~I~~l~~ir~~~s~~~~~~D~L 133 (1004)
..|+++.. ..+.||++... +++++....-| +.|.+|+- .+. ..+|
T Consensus 20 ~~la~~~~~~~i~iw~~~~~-------------------------~~~~~~~l~gH~~~V~~l~f-sp~-------~~~l 66 (371)
T d1k8kc_ 20 TQIAICPNNHEVHIYEKSGN-------------------------KWVQVHELKEHNGQVTGVDW-APD-------SNRI 66 (371)
T ss_dssp SEEEEECSSSEEEEEEEETT-------------------------EEEEEEEEECCSSCEEEEEE-ETT-------TTEE
T ss_pred CEEEEEECCCEEEEEECCCC-------------------------CEEEEEEECCCCCCEEEEEE-CCC-------CCEE
T ss_conf 99999948898999988899-------------------------78999995588998889999-799-------9999
Q ss_pred EEEECCCEEEEEEEECCCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCEEEEEECCC
Q ss_conf 999787809999996899958898755411731000147862125899099899997899999268599997435
Q 001853 134 ILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQ 208 (1004)
Q Consensus 134 lv~~~~aklsile~d~~~~~l~TiSlh~~E~~~~~~~k~g~~~~~~~~~l~VDP~gRca~l~~~~~~L~iLP~~~ 208 (1004)
+.+..+..+.+..++ .+..... ..+. +. .....-+..+|.++.++.....+.+.+.-+..
T Consensus 67 ~s~s~D~~i~vWd~~--~~~~~~~--~~~~---------~~--~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 67 VTCGTDRNAYVWTLK--GRTWKPT--LVIL---------RI--NRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp EEEETTSCEEEEEEE--TTEEEEE--EECC---------CC--SSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred EEEECCCEEEEEEEC--CCCCCCC--CCCC---------CC--CCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC
T ss_conf 999799939998620--3321100--1223---------22--11000111111121100000257630254420
No 9
>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.24 E-value=24 Score=9.99 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=12.7
Q ss_pred CEEEEEECCEEEEEECCC
Q ss_conf 759999368599981797
Q 001853 319 GGVLVVGANTIHYHSQSA 336 (1004)
Q Consensus 319 GGvLVig~n~Iiy~dq~~ 336 (1004)
|-+.|.+-|.|.-++.+.
T Consensus 21 ~~vyVGArn~iy~L~~~d 38 (476)
T d1shyb1 21 HHIFLGATNYIYVLNEED 38 (476)
T ss_dssp TEEEEEETTEEEEEETTT
T ss_pred CEEEEEEEEEEEEECCCC
T ss_conf 999998653599946434
No 10
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.95 E-value=29 Score=9.54 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=9.1
Q ss_pred CCEEEEEEECCEEEEEEECC
Q ss_conf 99899999099299999569
Q 001853 668 DPYVLLGMSDGSIRLLVGDP 687 (1004)
Q Consensus 668 dpyvll~~~dg~I~ll~~d~ 687 (1004)
+.|++....||.|.++....
T Consensus 174 ~~~l~~g~~dg~i~i~d~~~ 193 (287)
T d1pgua2 174 ETYIAAGDVMGKILLYDLQS 193 (287)
T ss_dssp SSEEEEEETTSCEEEEETTT
T ss_pred CCCCCCCCCCCCCCCEEECC
T ss_conf 65211011111100000023
Done!