BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001855
(1004 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 108/463 (23%), Positives = 176/463 (38%), Gaps = 51/463 (11%)
Query: 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ-----YIGDTLTPHLKHLHAVFLNCLT 194
WP+LLP + + S+ E AF ++ + D L L + FL
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK 184
Query: 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN--GNXXXXXXXX 252
+S+ P ++ A+ V FI T + L L + + E+L G+
Sbjct: 185 HSS-PKIRSHAVACVNQFIISRTQA---------LMLHIDSFIENLFALAGDEEPEVRKN 234
Query: 253 XXXXXXXGTEPRFLR--RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
E R R + ++V MLQ + +E A EF +TLAE
Sbjct: 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQDENVALEACEFWLTLAEQPICKDV 292
Query: 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES--SNYSVGQEC----LDR 364
++R LP +L +L++ + + D + + E G+ S++++ ++C LD
Sbjct: 293 LVRHLP----KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL-RKCSAAALDV 347
Query: 365 LAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVL 424
LA + + ++P L L EW EGC + M+ L +++ ++
Sbjct: 348 LA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406
Query: 425 NSFRDPHPRVR----WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480
D VR W ++ PD P + L +D N RVQ
Sbjct: 407 QCLSDKKALVRSITCW-TLSRYAHWVVSQPPD--TYLKPLMTELLKRILD--SNKRVQEA 461
Query: 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540
A SA E E L PYL I+ L+ + A+ ++ADS H K
Sbjct: 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 520
Query: 541 --YYDAVMPFL--KAILVNATDKSNRMLRAKSMECISLVGMAV 579
Y +MP L K ++ DK L +EC+S V A+
Sbjct: 521 PEYIQMLMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 559
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 883 SSYLTPMWG--KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVR 940
S+ LT M+ +DK E R+ + + D+ + C + ++P L N E V
Sbjct: 628 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 687
Query: 941 QAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKIC 998
A + +G + G ++P + L +L +I PN P+ L+ + LG +C
Sbjct: 688 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVC 744
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD-PDSLTLKLAHLLQRSPHPEARAMAA 78
D A + ++S S Q+ +A+ + L K QD PD+ K +LQ S +P+++ +A
Sbjct: 12 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQ-KADQILQFSTNPQSKFIAL 68
Query: 79 VLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASN 134
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 69 SILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 128
Query: 135 ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 129 EWPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 168
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAV 79
D A + ++S S Q+ +A+ + L K QD K +LQ S +P+++ +A
Sbjct: 14 DIALLDQVVSTFYQGSGVQQKQAQEI--LTKFQDNPDAWQKADQILQFSTNPQSKFIALS 71
Query: 80 LLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCD----TVSELASNI 135
+L KL+TR L + ++ + M++ Q + K L + T+ ++
Sbjct: 72 ILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131
Query: 136 LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176
P+N WPE +P + SS SV + E+ ++ LS+ + D
Sbjct: 132 WPQN-WPEFIPELIGS-SSSSVNVCENNMIVLKLLSEEVFD 170
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 109/471 (23%), Positives = 174/471 (36%), Gaps = 54/471 (11%)
Query: 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ-----YIGDTLTPHLKHLHAVFLNCLT 194
WP+LLP + + S+ E AF ++ + D L L + FL
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK 184
Query: 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN--GNXXXXXXXX 252
+S+ P ++ A+ V FI T + L L + + E+L G+
Sbjct: 185 HSS-PKIRSHAVACVNQFIISRTQA---------LMLHIDSFIENLFALAGDEEPEVRKN 234
Query: 253 XXXXXXXGTEPRFLR--RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
E R R + ++V MLQ + +E A EF +TLAE
Sbjct: 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQDENVALEACEFWLTLAEQPICKDV 292
Query: 311 MMRKLPQFINRL-----FAILMSMLL--DIEDDPLWHSAETE-------DEDAGESSNYS 356
++R LP+ I L ++ + +LL D+E+D +E + + + +
Sbjct: 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIGGSGGSGDTISDWNLRK 352
Query: 357 VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNL 416
LD LA + + ++P L L EW EGC + M+ L
Sbjct: 353 CSAAALDVLA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 411
Query: 417 EQVLSMVLNSFRDPHPRVR----WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472
+++ ++ D VR W ++ PD P + L +D
Sbjct: 412 PELIPHLIQCLSDKKALVRSITCW-TLSRYAHWVVSQPPD--TYLKPLMTELLKRILD-- 466
Query: 473 QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532
N RVQ A SA E E L PYL I+ L+ + A+ ++AD
Sbjct: 467 SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 525
Query: 533 SSQEHFQK--YYDAVMPFL--KAILVNATDKSNRMLRAKSMECISLVGMAV 579
S H K Y +MP L K ++ DK L +EC+S V A+
Sbjct: 526 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 572
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 883 SSYLTPMWG--KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVR 940
S+ LT M+ +DK E R+ + + D+ + C + ++P L N E V
Sbjct: 641 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 700
Query: 941 QAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKIC 998
A + +G + G ++P + L +L +I PN P+ L+ + LG +C
Sbjct: 701 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVC 757
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 405 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 454
Query: 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 534
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 455 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 514
Query: 535 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 588
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 515 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNIIPFC 564
Query: 589 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 648
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 565 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 623
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 579
Query: 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 534
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 535 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 588
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNILPFC 689
Query: 589 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 648
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 690 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 748
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIG-DTLTPHL 182
V+ +A +P + WPEL+P + V++ + ++ES + Q I + L
Sbjct: 113 --VAGIACAEIPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170
Query: 183 KHLHAVFLNCLTN---SNNPDVKIAALNAVINFIQCLTSSADRD 223
+ + + SNN VK+AA NA++N ++ ++ D++
Sbjct: 171 NEILTAIIQGMRKEEPSNN--VKLAATNALLNSLEFTKANFDKE 212
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 579
Query: 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 534
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 535 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 588
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNIIPFC 689
Query: 589 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 648
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 690 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 748
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +L ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIG-DTLTPHL 182
V+ +A +P N WPEL+P + V+ + + ++ES + Q I + L
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170
Query: 183 KHLHAVFLNCLTN---SNNPDVKIAALNAVINFIQCLTSSADRD 223
+ + + SNN VK+AA NA++N ++ ++ D++
Sbjct: 171 NEILTAIIQGMRKEEPSNN--VKLAATNALLNSLEFTKANFDKE 212
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476
E ++ +V NS +D +P V+ + + +L L Q + H Q D Q
Sbjct: 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL----QMESHIQ------STSDRIQFND 579
Query: 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSS 534
+Q+ + + N + D +++ LL + Q+ G VQE AL A++++ +
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 535 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDA 588
F KY +A PFL L N A+ C++ VG+ VG +
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGL-VGDLCRALQSNIIPFC 689
Query: 589 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 648
+VM++L+ G++ +L + + +G +F Y+ VV+ L Q++Q + D
Sbjct: 690 DEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 748
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIG-DTLTPHL 182
V+ +A +P N WPEL+P + V+ + + ++ES + Q I + L
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170
Query: 183 KHLHAVFLNCLTN---SNNPDVKIAALNAVINFIQCLTSSADRD 223
+ + + SNN VK+AA NA++N ++ ++ D++
Sbjct: 171 NEILTAIIQGMRKEEPSNN--VKLAATNALLNSLEFTKANFDKE 212
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIG-DTLTPHL 182
V+ +A +P N WPEL+P + V+ + + ++ES + Q I + L
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170
Query: 183 KHLHAVFLNCLTN---SNNPDVKIAALNAVINFIQCLTSSADRD 223
+ + + SNN VK+AA NA++N ++ ++ D++
Sbjct: 171 NEILTAIIQGMRKEEPSNN--VKLAATNALLNSLEFTKANFDKE 212
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIG-DTLTPHL 182
V+ +A +P N WPEL+P + V+ + + ++ES + Q I + L
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170
Query: 183 KHLHAVFLNCLTN---SNNPDVKIAALNAVINFIQCLTSSADRD 223
+ + + SNN VK+AA NA++N ++ ++ D++
Sbjct: 171 NEILTAIIQGMRKEEPSNN--VKLAATNALLNSLEFTKANFDKE 212
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 108/545 (19%), Positives = 221/545 (40%), Gaps = 39/545 (7%)
Query: 136 LPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL- 193
LP WPEL+ M ++ + ++ ++ L Y+ ++ P + L + N L
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALG----YMCESADPQSQALVSSSNNILI 182
Query: 194 -------TNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNXX 246
+ + V++AALNA+ + + + ++ +R+ ++ L M+ + E+ +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYL---MQVVCEATQAEDIE 239
Query: 247 XXXXXXXXXXXXXGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306
F++ + + + L IA +S + + +EF T+ E
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYA-LTIATMKSPNDKVASMTVEFWSTICEEEI 298
Query: 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPL-WHSAETED-EDAGESSNYSVGQECLDR 364
+ + PQ + + +S + D+ + L + + ED ED + + S G CL
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAG-ACLQL 357
Query: 365 LAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVM-VKNLEQVLSMV 423
A G + + PV E + + A W +G KV + Q L +
Sbjct: 358 FAQNCGNHILEPVL-EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416
Query: 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAA 482
LN D +V+ IG+++ + + Q H P V+ A + D +P+V + +
Sbjct: 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCS 474
Query: 483 SAVLNFSEN---CTPEILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADSSQEH 537
++N E TP + + +V L+ + + + A +AL ++ + + +
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534
Query: 538 FQKYYDAVMPFLKAIL--VNATDKSNRMLR-AKSMECIS---LVGMAVGKDKFRDDAKQV 591
+ ++ F+ L + D++ L A+S++ + L +A K + V
Sbjct: 535 VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV 594
Query: 592 MEVLMSLQGSQMETDDPT--TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS-AQLKPD 648
++LM L +E D + A + L LG+ F Y+ P LL++ Q+
Sbjct: 595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654
Query: 649 VTITS 653
V+IT+
Sbjct: 655 VSITA 659
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Query: 493 TPEILTPYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551
+P + P D ++ LL+ +++ A++++A S + F+KY + P+L
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL-- 644
Query: 552 ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 611
+ A ++ + + ++ I+ + ++ +D FR + +M VL + S
Sbjct: 645 --LKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMI-SNPNARRELKP 700
Query: 612 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 648
+L + + +G DF+PY++ +M + + KP+
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE 737
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 919 KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVV---IRH 975
KY ET+ P+LL+A N + V AV G A+ S+ + + + +NV+ I +
Sbjct: 635 KYLETFSPYLLKALNQVDSPVSITAV---GFIADISNSLEEDFRRYSDAMMNVLAQMISN 691
Query: 976 PNA---LQPENLMAYDNAVSALG 995
PNA L+P L + + S +G
Sbjct: 692 PNARRELKPAVLSVFGDIASNIG 714
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 17/220 (7%)
Query: 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPE----AR 74
PD A LI+ L T + R E E ++ ++L L L + +P AR
Sbjct: 1 PDYASGXELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVAR 60
Query: 75 AMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDT 127
A + ++ LT D + W + + + +K+ +LQ++ E+ + S C
Sbjct: 61 VAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC-- 118
Query: 128 VSELASNILPENGWPELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIGDTLTPHLKH- 184
V+ +A +P + WPEL+P + V++ + +ES + Q I +
Sbjct: 119 VAGIACAEIPVSQWPELIPQLVANVTNPNSTEHXKESTLEAIGYICQDIDPEQLQDKSNE 178
Query: 185 -LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223
L A+ + +VK+AA NA++N ++ ++ D++
Sbjct: 179 ILTAIIQGXRKEEPSNNVKLAATNALLNSLEFTKANFDKE 218
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 108/545 (19%), Positives = 221/545 (40%), Gaps = 39/545 (7%)
Query: 136 LPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL- 193
LP WPEL+ M ++ + ++ ++ L Y+ ++ P + L + N L
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALG----YMCESADPQSQALVSSSNNILI 182
Query: 194 -------TNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNXX 246
+ + V++AALNA+ + + + ++ +R+ ++ L M+ + E+ +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYL---MQVVCEATQAEDIE 239
Query: 247 XXXXXXXXXXXXXGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306
F++ + + + L IA +S + + +EF T+ E
Sbjct: 240 VQAAAFGCLCKIMSLYYTFMKPYMEQALYA-LTIATMKSPNDKVASMTVEFWSTICEEEI 298
Query: 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPL-WHSAETED-EDAGESSNYSVGQECLDR 364
+ + PQ + + +S + D+ + L + + ED ED + + S G CL
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAG-ACLQL 357
Query: 365 LAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVM-VKNLEQVLSMV 423
A G + + PV E + + A W +G KV + Q L +
Sbjct: 358 FAQNCGNHILEPVL-EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416
Query: 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAA 482
LN D +V+ IG+++ + + Q H P V+ A + D +P+V + +
Sbjct: 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCS 474
Query: 483 SAVLNFSEN---CTPEILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADSSQEH 537
++N E TP + + +V L+ + + + A +AL ++ + + +
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534
Query: 538 FQKYYDAVMPFLKAIL--VNATDKSNRMLR-AKSMECIS---LVGMAVGKDKFRDDAKQV 591
+ ++ F+ L + D++ L A+S++ + L +A K + V
Sbjct: 535 VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV 594
Query: 592 MEVLMSLQGSQMETDDPT--TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS-AQLKPD 648
++LM L +E D + A + L LG+ F Y+ P LL++ Q+
Sbjct: 595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654
Query: 649 VTITS 653
V+IT+
Sbjct: 655 VSITA 659
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Query: 493 TPEILTPYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551
+P + P D ++ LL+ +++ A++++A S + F+KY + P+L
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL-- 644
Query: 552 ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 611
+ A ++ + + ++ I+ + ++ +D FR + +M VL + S
Sbjct: 645 --LKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMI-SNPNARRELKP 700
Query: 612 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD 648
+L + + +G DF+PY++ +M + + KP+
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE 737
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 919 KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVV---IRH 975
KY ET+ P+LL+A N + V AV G A+ S+ + + + +NV+ I +
Sbjct: 635 KYLETFSPYLLKALNQVDSPVSITAV---GFIADISNSLEEDFRRYSDAMMNVLAQMISN 691
Query: 976 PNA---LQPENLMAYDNAVSALG 995
PNA L+P L + + S +G
Sbjct: 692 PNARRELKPAVLSVFGDIASNIG 714
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 73 ARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLC 125
AR A + ++ LT D + W + + + +K+ +L ++ E+ + S C
Sbjct: 53 ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQC 112
Query: 126 DTVSELASNILPENGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIG-DTLTPHL 182
V+ +A +P N WPEL+P + V+ + + ++ES + Q I + L
Sbjct: 113 --VAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170
Query: 183 KHLHAVFLNCLTN---SNNPDVKIAALNAVINFIQCLTSSADRD 223
+ + + SNN VK+AA NA++N ++ ++ D++
Sbjct: 171 NEILTAIIQGMRKEEPSNN--VKLAATNALLNSLEFTKANFDKE 212
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 114/497 (22%), Positives = 183/497 (36%), Gaps = 81/497 (16%)
Query: 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ-----YIGDTLTPHLKHLHAVFLNCLT 194
WP+LLP + + S+ E AF ++ + D L L + FL
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK 184
Query: 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN--GNXXXXXXXX 252
+S+ P ++ A+ V FI T + L L + + E+L G+
Sbjct: 185 HSS-PKIRSHAVACVNQFIISRTQA---------LMLHIDSFIENLFALAGDEEPEVRKN 234
Query: 253 XXXXXXXGTEPRFLR--RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
E R R + ++V MLQ + +E A EF +TLAE
Sbjct: 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQDENVALEACEFWLTLAEQPICKDV 292
Query: 311 MMRKLPQFINRL-----FAILMSMLL--DIEDD-----------PLWHSAETEDEDAGES 352
++R LP+ I L ++ + +LL D+E+D P +H + T + E
Sbjct: 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDED 352
Query: 353 ------------------SNYSVGQEC----LDRLAIALGGNTIVPVASEQLPAYLAAPE 390
S++++ ++C LD LA + + ++P L L E
Sbjct: 353 GIEEEDDDDDEIDDDDTISDWNL-RKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHE 410
Query: 391 WXXXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAIGQLS 446
W EGC + M+ L +++ ++ D VR W ++
Sbjct: 411 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCW-TLSRYAHWV 469
Query: 447 TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506
PD P + L +D N RVQ A SA E E L PYL I+
Sbjct: 470 VSQPPD--TYLKPLMTELLKRILD--SNKRVQEAACSAFATLEEEACTE-LVPYLAYILD 524
Query: 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQK--YYDAVMPFL--KAILVNATDKSNR 562
L+ + A+ ++ADS H K Y +MP L K ++ DK
Sbjct: 525 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF 584
Query: 563 MLRAKSMECISLVGMAV 579
L +EC+S V A+
Sbjct: 585 PL----LECLSSVATAL 597
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 883 SSYLTPMWG--KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVR 940
S+ LT M+ +DK E R+ + + D+ + C + ++P L N E V
Sbjct: 666 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 725
Query: 941 QAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKIC 998
A + +G + G ++P + L +L +I PN P+ L+ + LG +C
Sbjct: 726 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVC 782
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 25/218 (11%)
Query: 436 WAAIN----AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491
W +N AIG +S + + + +F V+ L G + + +A AS ++ +
Sbjct: 491 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIM-YIVG 549
Query: 492 CTPEILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF-QKYYDAVMP 547
P L +L +V+KL + VQ+ A +A + HF Q VMP
Sbjct: 550 QYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP 609
Query: 548 FLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL--------- 598
F+ IL N + + VG +G + + ++E M L
Sbjct: 610 FIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 669
Query: 599 QGSQMETD---DPTT----SYMLQAWARLCKCLGQDFL 629
Q + D DP T +L+ R CK +G F+
Sbjct: 670 QQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFV 707
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 25/218 (11%)
Query: 436 WAAIN----AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491
W +N AIG +S + + + +F V+ L G + + +A AS ++ +
Sbjct: 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIM-YIVG 551
Query: 492 CTPEILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF-QKYYDAVMP 547
P L +L +V+KL + VQ+ A +A + HF Q VMP
Sbjct: 552 QYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP 611
Query: 548 FLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL--------- 598
F+ IL N + + VG +G + + ++E M L
Sbjct: 612 FIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 671
Query: 599 QGSQMETD---DPTT----SYMLQAWARLCKCLGQDFL 629
Q + D DP T +L+ R CK +G F+
Sbjct: 672 QQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFV 709
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 892 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA 951
+DK E R+ + + D+ + C + + P L N E V A + +G +
Sbjct: 677 QDKXPEVRQSSFALLGDLTKACFQHVKPCIADFXPILGTNLNPEFISVCNNATWAIGEIS 736
Query: 952 EFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDN-AVSALGKIC 998
G +P + L +L +I PN P+ L+ + LG +C
Sbjct: 737 IQXGIEXQPYIPXVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVC 782
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 110/495 (22%), Positives = 176/495 (35%), Gaps = 77/495 (15%)
Query: 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ-----YIGDTLTPHLKHLHAVFLNCLT 194
WP+LLP + + S+ E AF ++ + D L L FL
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIXIPKFLQFFK 184
Query: 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN--GNXXXXXXXX 252
+S+ P ++ A+ V FI T + L L + + TE+L G+
Sbjct: 185 HSS-PKIRSHAVACVNQFIISRTQA---------LXLHIDSFTENLFALAGDEEPEVRKN 234
Query: 253 XXXXXXXGTEPRFLR--RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
E R R ++V LQ + +E A EF +TLAE
Sbjct: 235 VCRALVXLLEVRMDRLLPHXHNIVEYXLQ--RTQDQDENVALEACEFWLTLAEQPICKDV 292
Query: 311 MMRKLPQFINRL-----FAILMSMLL--DIEDD-----------PLWHSAETEDEDAGES 352
++R LP+ I L ++ + +LL D+E+D P +H + T + E
Sbjct: 293 LVRHLPKLIPVLVNGXKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDED 352
Query: 353 ------------------SNYSVGQEC----LDRLAIALGGNTIVPVASEQLPAYLAAPE 390
S++++ ++C LD LA + + ++P L L E
Sbjct: 353 GIEEEDDDDDEIDDDDTISDWNL-RKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHE 410
Query: 391 WXXXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAIGQLS 446
W EGC + + L +++ ++ D VR W ++
Sbjct: 411 WVVKESGILVLGAIAEGCXQGXIPYLPELIPHLIQCLSDKKALVRSITCW-TLSRYAHWV 469
Query: 447 TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506
PD P L +D N RVQ A SA E E L PYL I+
Sbjct: 470 VSQPPD--TYLKPLXTELLKRILD--SNKRVQEAACSAFATLEEEACTE-LVPYLAYILD 524
Query: 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQK--YYDAVMPFLKAILVNATDKSNRML 564
L+ + A+ ++ADS H K Y + P L D+ +
Sbjct: 525 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQXLXPPLIQKWNXLKDEDKDLF 584
Query: 565 RAKSMECISLVGMAV 579
+EC+S V A+
Sbjct: 585 PL--LECLSSVATAL 597
>pdb|2L1L|B Chain B, Nmr Solution Structure Of The Phi0 Pki Nes Peptide In
Complex With Crm1-Rangtp
Length = 127
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF-QKYYDAVMPFLKAILVN 555
+L +V+KL + VQ+ A +A + HF Q VMPF+ IL N
Sbjct: 58 FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN 114
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 430 PHPRVRWAAINAIGQLSTDLGPDLQNQ--FHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487
P P V A+ +G + T G D Q Q Q LP L + ++ A + N
Sbjct: 298 PSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355
Query: 488 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 542
+ +I GI+ L+ LLQ + +++ A A+++ A S H Q Y
Sbjct: 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN-ATSGGSHDQIKY 409
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 430 PHPRVRWAAINAIGQLSTDLGPDLQNQ--FHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487
P P V A+ +G + T G D Q Q Q LP L + ++ A + N
Sbjct: 260 PSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 317
Query: 488 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 542
+ +I GI+ L+ LLQ + +++ A A+++ A S H Q Y
Sbjct: 318 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN-ATSGGSHDQIKY 371
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 480 HAASAVLNFSENCTPEILTPYLDGIVSKLL----VLLQNGKQMVQ--------EGALTAL 527
+++SA+ +E+ +P L Y + + K + + +Q + GA T
Sbjct: 532 YSSSAIFG-TEHDSPPALRGYAEALXQKAWELSPAIFPSSEQFTEWSDRFHGLHGAFTCT 590
Query: 528 ASVADSSQEHFQKYYDAVM 546
+ VADS Q H +KY+ +V+
Sbjct: 591 SVVADSXQRHARKYFPSVL 609
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 480 HAASAVLNFSENCTPEILTPYLDGIVSKLL----VLLQNGKQMVQ--------EGALTAL 527
+++SA+ +E+ +P L Y + ++ K + + +Q + GA T
Sbjct: 541 YSSSAIFG-TEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWSDRFHGLHGAFTCT 599
Query: 528 ASVADSSQEHFQKYYDAVM 546
+ VADS Q H +KY+ +V+
Sbjct: 600 SVVADSMQRHARKYFPSVL 618
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 480 HAASAVLNFSENCTPEILTPYLDGIVSKLL----VLLQNGKQMVQ--------EGALTAL 527
+++SA+ +E+ +P L Y + ++ K + + +Q + GA T
Sbjct: 535 YSSSAIFG-TEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWSDRFHGLHGAFTCT 593
Query: 528 ASVADSSQEHFQKYYDAVM 546
+ VADS Q H +KY+ +V+
Sbjct: 594 SVVADSMQRHARKYFPSVL 612
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,570,536
Number of Sequences: 62578
Number of extensions: 890669
Number of successful extensions: 2268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 116
length of query: 1004
length of database: 14,973,337
effective HSP length: 108
effective length of query: 896
effective length of database: 8,214,913
effective search space: 7360562048
effective search space used: 7360562048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)