Query 001855
Match_columns 1004
No_of_seqs 300 out of 2920
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 10:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 3E-112 6E-117 936.4 98.3 961 19-1003 1-965 (1075)
2 KOG2023 Nuclear transport rece 100.0 5.3E-66 1.2E-70 529.9 56.1 791 17-945 5-850 (885)
3 KOG1241 Karyopherin (importin) 100.0 4.3E-60 9.4E-65 495.7 66.0 784 23-901 2-845 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 7E-47 1.5E-51 382.3 66.8 667 19-744 1-713 (858)
5 KOG2171 Karyopherin (importin) 100.0 9.5E-37 2.1E-41 338.6 75.8 806 68-1003 15-918 (1075)
6 KOG1824 TATA-binding protein-i 100.0 2.2E-35 4.9E-40 315.9 66.5 894 26-1000 9-1096(1233)
7 KOG1991 Nuclear transport rece 100.0 6.2E-33 1.3E-37 301.8 68.4 687 19-736 1-794 (1010)
8 KOG2023 Nuclear transport rece 100.0 1.5E-33 3.3E-38 291.3 49.2 754 57-1004 11-822 (885)
9 KOG1241 Karyopherin (importin) 100.0 3.3E-27 7.2E-32 249.3 55.0 659 12-744 24-813 (859)
10 KOG1824 TATA-binding protein-i 100.0 5.4E-26 1.2E-30 244.5 64.7 625 107-822 9-705 (1233)
11 KOG1992 Nuclear export recepto 100.0 1.8E-25 3.9E-30 238.0 60.2 590 20-628 3-674 (960)
12 KOG2274 Predicted importin 9 [ 100.0 3E-24 6.4E-29 231.4 60.7 702 19-796 1-779 (1005)
13 KOG1993 Nuclear transport rece 100.0 4.1E-22 8.9E-27 211.5 59.9 599 24-643 2-708 (978)
14 COG5215 KAP95 Karyopherin (imp 99.9 1.5E-20 3.2E-25 192.2 59.9 664 10-745 26-812 (858)
15 KOG0213 Splicing factor 3b, su 99.9 1.8E-21 3.9E-26 204.3 48.4 670 183-1001 363-1067(1172)
16 COG5656 SXM1 Importin, protein 99.9 2.8E-19 6E-24 188.7 62.0 512 21-551 2-587 (970)
17 KOG0213 Splicing factor 3b, su 99.9 1.8E-17 3.8E-22 174.7 62.8 687 22-801 363-1111(1172)
18 PLN03200 cellulose synthase-in 99.9 1.5E-17 3.3E-22 202.1 62.5 784 22-1003 13-864 (2102)
19 COG5181 HSH155 U2 snRNP splice 99.9 5.2E-19 1.1E-23 182.4 41.0 678 184-978 169-897 (975)
20 KOG2021 Nuclear mRNA export fa 99.9 5.5E-17 1.2E-21 171.8 54.2 632 23-718 4-782 (980)
21 KOG0915 Uncharacterized conser 99.9 6.8E-17 1.5E-21 184.2 48.9 633 230-973 817-1490(1702)
22 KOG2022 Nuclear transport rece 99.8 4.7E-14 1E-18 153.2 66.0 603 21-643 6-755 (982)
23 COG5101 CRM1 Importin beta-rel 99.8 3.1E-13 6.8E-18 140.7 66.4 496 19-536 11-652 (1053)
24 PLN03200 cellulose synthase-in 99.8 4E-15 8.7E-20 181.4 57.5 714 108-1003 18-768 (2102)
25 COG5181 HSH155 U2 snRNP splice 99.8 2.1E-14 4.5E-19 149.0 53.7 689 20-801 166-916 (975)
26 COG5657 CSE1 CAS/CSE protein i 99.8 7.7E-14 1.7E-18 152.6 49.8 542 23-576 5-608 (947)
27 KOG1242 Protein containing ada 99.8 7.6E-15 1.6E-19 155.3 38.8 439 57-555 97-546 (569)
28 KOG0915 Uncharacterized conser 99.8 4E-13 8.7E-18 154.0 53.6 646 183-955 817-1513(1702)
29 KOG1242 Protein containing ada 99.7 7.1E-14 1.5E-18 148.1 41.0 525 116-736 29-558 (569)
30 KOG1248 Uncharacterized conser 99.7 1.5E-09 3.3E-14 123.2 64.3 748 57-975 94-922 (1176)
31 KOG0212 Uncharacterized conser 99.6 2.8E-12 6.1E-17 132.6 37.9 412 189-644 5-425 (675)
32 KOG1991 Nuclear transport rece 99.6 2.7E-08 5.9E-13 111.1 68.1 490 61-597 6-592 (1010)
33 KOG0212 Uncharacterized conser 99.6 1.3E-12 2.8E-17 135.1 32.0 393 108-535 5-409 (675)
34 PF01602 Adaptin_N: Adaptin N 99.6 8.6E-12 1.9E-16 144.6 40.9 481 18-576 37-523 (526)
35 PF01602 Adaptin_N: Adaptin N 99.6 1.8E-11 3.9E-16 141.9 43.4 510 22-618 7-520 (526)
36 KOG2081 Nuclear transport regu 99.6 1.9E-11 4.1E-16 127.9 37.5 444 40-512 2-519 (559)
37 PTZ00429 beta-adaptin; Provisi 99.6 5E-10 1.1E-14 128.1 51.9 471 22-576 68-545 (746)
38 PTZ00429 beta-adaptin; Provisi 99.6 2E-09 4.4E-14 123.2 53.6 473 23-580 33-510 (746)
39 KOG0166 Karyopherin (importin) 99.6 1.7E-12 3.7E-17 137.1 26.1 363 145-536 68-440 (514)
40 KOG1248 Uncharacterized conser 99.5 1.8E-07 3.9E-12 107.0 66.2 748 125-999 72-898 (1176)
41 KOG0211 Protein phosphatase 2A 99.5 6.9E-11 1.5E-15 133.1 36.6 566 116-796 94-663 (759)
42 KOG0166 Karyopherin (importin) 99.4 6.2E-11 1.3E-15 125.5 27.8 358 187-579 69-438 (514)
43 KOG1992 Nuclear export recepto 99.4 4E-07 8.6E-12 99.6 56.8 721 68-962 16-804 (960)
44 KOG2274 Predicted importin 9 [ 99.4 8.9E-07 1.9E-11 98.1 58.5 706 68-912 15-781 (1005)
45 KOG1943 Beta-tubulin folding c 99.4 1.8E-07 3.9E-12 105.6 53.6 476 98-625 336-840 (1133)
46 KOG0211 Protein phosphatase 2A 99.4 2.3E-09 5E-14 121.0 37.7 537 24-622 122-664 (759)
47 COG5064 SRP1 Karyopherin (impo 99.4 2.4E-11 5.3E-16 117.6 16.5 362 144-535 72-446 (526)
48 PF08506 Cse1: Cse1; InterPro 99.3 7.8E-10 1.7E-14 116.7 24.8 271 206-485 57-370 (370)
49 PF10508 Proteasom_PSMB: Prote 99.3 2.6E-08 5.7E-13 111.7 37.2 395 108-533 43-463 (503)
50 KOG1943 Beta-tubulin folding c 99.3 1E-05 2.2E-10 92.0 55.2 653 260-1002 60-790 (1133)
51 KOG1967 DNA repair/transcripti 99.1 3.7E-05 8E-10 85.9 56.8 234 685-953 788-1025(1030)
52 KOG1060 Vesicle coat complex A 99.1 1.3E-07 2.8E-12 102.6 32.2 452 23-553 72-550 (968)
53 PF10508 Proteasom_PSMB: Prote 99.1 5E-07 1.1E-11 101.5 37.6 425 23-491 4-463 (503)
54 PRK13800 putative oxidoreducta 99.1 1.4E-08 3E-13 122.9 27.0 275 144-529 622-896 (897)
55 KOG1060 Vesicle coat complex A 99.1 1.2E-06 2.5E-11 95.5 37.6 383 107-536 39-462 (968)
56 PRK13800 putative oxidoreducta 99.1 1E-08 2.3E-13 123.9 24.9 273 106-487 624-896 (897)
57 KOG1062 Vesicle coat complex A 99.1 1.3E-06 2.8E-11 95.7 36.7 428 140-627 100-549 (866)
58 PRK09687 putative lyase; Provi 99.0 3.5E-08 7.6E-13 100.9 22.4 254 145-487 25-279 (280)
59 PF12460 MMS19_C: RNAPII trans 99.0 7.5E-07 1.6E-11 98.1 33.6 383 145-552 1-414 (415)
60 PF12755 Vac14_Fab1_bd: Vacuol 99.0 4.2E-09 9.1E-14 86.8 11.4 94 393-489 2-95 (97)
61 PRK09687 putative lyase; Provi 99.0 1.8E-07 3.8E-12 95.8 24.7 229 20-302 21-249 (280)
62 KOG1061 Vesicle coat complex A 99.0 1.5E-06 3.2E-11 95.5 32.5 475 23-576 50-527 (734)
63 KOG1240 Protein kinase contain 99.0 3.5E-08 7.6E-13 111.9 20.4 302 144-493 423-728 (1431)
64 KOG1059 Vesicle coat complex A 98.9 3.9E-05 8.5E-10 83.2 40.3 268 162-490 128-401 (877)
65 PF12348 CLASP_N: CLASP N term 98.9 6.4E-08 1.4E-12 97.8 19.1 191 378-580 8-209 (228)
66 KOG0392 SNF2 family DNA-depend 98.9 0.00026 5.7E-09 81.9 47.7 143 68-216 88-239 (1549)
67 COG5064 SRP1 Karyopherin (impo 98.9 6.5E-07 1.4E-11 87.5 23.1 358 59-492 74-445 (526)
68 KOG2020 Nuclear transport rece 98.9 1.2E-05 2.6E-10 94.4 37.7 132 34-173 24-163 (1041)
69 KOG1020 Sister chromatid cohes 98.9 0.00064 1.4E-08 80.5 54.9 149 428-578 1046-1202(1692)
70 KOG0891 DNA-dependent protein 98.9 0.00015 3.1E-09 92.4 48.9 540 373-1000 130-720 (2341)
71 KOG1240 Protein kinase contain 98.9 1E-06 2.2E-11 100.5 27.3 290 198-536 436-729 (1431)
72 KOG4224 Armadillo repeat prote 98.9 5.6E-07 1.2E-11 88.8 21.6 454 37-534 23-495 (550)
73 COG5240 SEC21 Vesicle coat com 98.8 0.00015 3.3E-09 76.5 39.6 408 103-579 22-444 (898)
74 COG5240 SEC21 Vesicle coat com 98.8 4.6E-05 1E-09 80.3 35.0 292 181-531 261-554 (898)
75 KOG1062 Vesicle coat complex A 98.8 0.00027 5.9E-09 78.1 41.4 422 98-580 102-547 (866)
76 PF12460 MMS19_C: RNAPII trans 98.8 1.2E-05 2.7E-10 88.6 32.3 391 421-888 2-413 (415)
77 KOG1059 Vesicle coat complex A 98.8 4.6E-05 1E-09 82.7 33.8 223 69-304 102-366 (877)
78 PF12348 CLASP_N: CLASP N term 98.7 3.2E-07 6.8E-12 92.8 15.9 190 351-547 20-221 (228)
79 KOG4224 Armadillo repeat prote 98.7 7.8E-07 1.7E-11 87.9 15.9 382 119-535 62-449 (550)
80 KOG1020 Sister chromatid cohes 98.7 0.0027 5.9E-08 75.5 61.7 164 358-532 797-960 (1692)
81 KOG2032 Uncharacterized conser 98.7 1.4E-05 3.1E-10 83.0 25.4 169 377-546 217-386 (533)
82 KOG1993 Nuclear transport rece 98.7 0.0016 3.5E-08 72.1 62.1 344 392-797 412-769 (978)
83 KOG1967 DNA repair/transcripti 98.6 0.0021 4.5E-08 72.6 55.3 133 856-995 883-1020(1030)
84 PF03810 IBN_N: Importin-beta 98.5 3.5E-07 7.6E-12 73.7 8.1 67 42-113 1-76 (77)
85 KOG4535 HEAT and armadillo rep 98.5 0.00044 9.6E-09 71.6 30.3 450 118-577 10-603 (728)
86 PF12755 Vac14_Fab1_bd: Vacuol 98.4 2.2E-06 4.7E-11 70.8 9.8 93 898-997 2-94 (97)
87 KOG1058 Vesicle coat complex C 98.4 0.0046 1E-07 68.1 36.0 171 246-450 295-466 (948)
88 cd00020 ARM Armadillo/beta-cat 98.4 2.8E-06 6.1E-11 76.0 10.6 111 378-490 8-120 (120)
89 PF03378 CAS_CSE1: CAS/CSE pro 98.3 0.0003 6.4E-09 76.7 26.8 238 493-785 16-260 (435)
90 KOG1820 Microtubule-associated 98.3 1.5E-05 3.3E-10 91.5 17.7 209 371-592 247-458 (815)
91 KOG2259 Uncharacterized conser 98.3 0.0013 2.8E-08 71.2 30.0 295 183-536 197-515 (823)
92 KOG1078 Vesicle coat complex C 98.3 0.0072 1.6E-07 67.2 36.0 289 181-532 242-532 (865)
93 PF13513 HEAT_EZ: HEAT-like re 98.3 1.6E-06 3.5E-11 64.1 5.7 55 391-445 1-55 (55)
94 KOG0414 Chromosome condensatio 98.3 0.02 4.2E-07 67.0 62.8 160 141-304 268-429 (1251)
95 KOG1058 Vesicle coat complex C 98.3 0.0066 1.4E-07 67.0 34.6 429 28-535 26-466 (948)
96 KOG1077 Vesicle coat complex A 98.3 0.0065 1.4E-07 66.5 34.1 127 414-551 325-452 (938)
97 KOG1061 Vesicle coat complex A 98.3 0.0009 2E-08 74.4 28.4 428 23-528 87-524 (734)
98 PF05804 KAP: Kinesin-associat 98.2 0.0034 7.4E-08 72.0 33.5 372 116-535 262-652 (708)
99 KOG4535 HEAT and armadillo rep 98.2 0.0019 4.2E-08 67.1 28.0 475 154-645 7-584 (728)
100 KOG2259 Uncharacterized conser 98.2 0.0028 6E-08 68.8 29.4 292 236-580 203-514 (823)
101 KOG2956 CLIP-associating prote 98.2 0.00027 5.9E-09 73.3 21.0 205 378-596 288-496 (516)
102 PF03378 CAS_CSE1: CAS/CSE pro 98.2 0.0022 4.7E-08 70.1 29.2 236 455-740 21-270 (435)
103 KOG2021 Nuclear mRNA export fa 98.2 0.021 4.5E-07 63.3 47.3 75 854-932 711-785 (980)
104 KOG1077 Vesicle coat complex A 98.2 0.0091 2E-07 65.4 32.6 315 150-508 118-450 (938)
105 KOG1078 Vesicle coat complex C 98.2 0.025 5.4E-07 63.1 39.1 379 124-579 40-423 (865)
106 PF13513 HEAT_EZ: HEAT-like re 98.2 2.2E-06 4.9E-11 63.3 3.9 55 937-997 1-55 (55)
107 PF08389 Xpo1: Exportin 1-like 98.1 1.5E-05 3.2E-10 74.4 10.3 128 118-255 2-148 (148)
108 KOG0168 Putative ubiquitin fus 98.1 0.002 4.4E-08 71.8 27.5 199 375-578 209-414 (1051)
109 KOG0392 SNF2 family DNA-depend 98.1 0.04 8.7E-07 64.8 44.0 167 104-281 78-258 (1549)
110 KOG0168 Putative ubiquitin fus 98.1 0.0057 1.2E-07 68.4 30.4 170 145-334 169-348 (1051)
111 COG5096 Vesicle coat complex, 98.1 0.038 8.2E-07 63.3 40.0 139 21-173 54-196 (757)
112 KOG1410 Nuclear transport rece 98.1 0.032 7E-07 60.8 49.6 146 21-173 4-158 (1082)
113 KOG1822 Uncharacterized conser 98.0 0.089 1.9E-06 64.9 40.5 133 420-555 878-1011(2067)
114 KOG4413 26S proteasome regulat 98.0 0.012 2.6E-07 58.3 27.0 334 122-490 61-439 (524)
115 cd00020 ARM Armadillo/beta-cat 98.0 2.4E-05 5.3E-10 69.9 7.8 111 419-531 8-119 (120)
116 PF12717 Cnd1: non-SMC mitotic 97.9 0.00033 7.1E-09 66.9 15.4 112 390-510 1-112 (178)
117 KOG2956 CLIP-associating prote 97.9 0.00029 6.3E-09 73.1 15.6 171 374-553 326-499 (516)
118 KOG2032 Uncharacterized conser 97.9 0.0058 1.3E-07 64.3 24.9 280 126-447 236-531 (533)
119 KOG2933 Uncharacterized conser 97.8 0.00056 1.2E-08 67.3 14.4 149 378-535 89-237 (334)
120 PF04510 DUF577: Family of unk 97.8 0.0019 4.2E-08 58.1 16.4 154 103-260 3-164 (174)
121 KOG4524 Uncharacterized conser 97.8 0.0044 9.5E-08 70.6 22.7 297 161-471 566-900 (1014)
122 PLN03076 ARF guanine nucleotid 97.8 0.034 7.5E-07 70.7 32.6 311 140-471 1130-1513(1780)
123 COG5096 Vesicle coat complex, 97.8 0.072 1.6E-06 61.1 31.9 164 32-214 29-195 (757)
124 PF12717 Cnd1: non-SMC mitotic 97.7 0.003 6.6E-08 60.3 18.4 134 117-260 1-139 (178)
125 KOG1293 Proteins containing ar 97.7 0.11 2.3E-06 57.3 31.0 144 389-534 389-535 (678)
126 KOG0946 ER-Golgi vesicle-tethe 97.7 0.15 3.2E-06 57.3 40.4 116 142-262 121-243 (970)
127 PF13646 HEAT_2: HEAT repeats; 97.7 0.00026 5.6E-09 58.8 9.1 86 380-486 2-88 (88)
128 PF14500 MMS19_N: Dos2-interac 97.7 0.017 3.6E-07 58.5 23.4 248 147-425 3-257 (262)
129 PF05804 KAP: Kinesin-associat 97.7 0.028 6.1E-07 64.7 27.6 302 142-492 330-651 (708)
130 PF10274 ParcG: Parkin co-regu 97.7 0.00071 1.5E-08 62.5 12.1 96 457-553 35-133 (183)
131 cd00256 VATPase_H VATPase_H, r 97.7 0.034 7.4E-07 59.9 26.5 355 53-446 50-424 (429)
132 KOG1820 Microtubule-associated 97.7 0.0019 4.2E-08 74.8 18.3 164 375-546 293-458 (815)
133 PF08167 RIX1: rRNA processing 97.6 0.0017 3.6E-08 60.8 14.4 138 414-553 21-164 (165)
134 PF08167 RIX1: rRNA processing 97.6 0.0017 3.6E-08 60.8 14.1 139 140-280 22-163 (165)
135 COG5656 SXM1 Importin, protein 97.6 0.21 4.5E-06 55.8 65.0 499 102-642 3-588 (970)
136 KOG4413 26S proteasome regulat 97.6 0.1 2.2E-06 51.9 29.4 347 157-531 54-438 (524)
137 PF13646 HEAT_2: HEAT repeats; 97.5 0.00045 9.8E-09 57.3 8.4 88 883-995 1-88 (88)
138 PF05004 IFRD: Interferon-rela 97.5 0.057 1.2E-06 56.5 25.5 213 726-977 56-286 (309)
139 PF05004 IFRD: Interferon-rela 97.5 0.022 4.8E-07 59.5 22.4 201 421-625 46-260 (309)
140 PF08506 Cse1: Cse1; InterPro 97.5 0.19 4.2E-06 53.9 30.8 239 262-527 72-370 (370)
141 PF10274 ParcG: Parkin co-regu 97.5 0.0016 3.6E-08 60.1 12.3 97 879-976 36-136 (183)
142 PF11864 DUF3384: Domain of un 97.5 0.19 4.2E-06 56.4 31.4 314 119-465 5-349 (464)
143 KOG1822 Uncharacterized conser 97.5 0.53 1.2E-05 58.5 57.1 192 106-304 54-249 (2067)
144 PF14500 MMS19_N: Dos2-interac 97.5 0.023 4.9E-07 57.6 21.3 230 353-597 14-257 (262)
145 PF04826 Arm_2: Armadillo-like 97.5 0.0082 1.8E-07 60.2 17.9 190 380-581 15-209 (254)
146 KOG0413 Uncharacterized conser 97.5 0.1 2.2E-06 59.6 27.3 92 854-953 945-1036(1529)
147 KOG4653 Uncharacterized conser 97.5 0.016 3.4E-07 65.3 21.2 189 386-587 736-927 (982)
148 KOG0891 DNA-dependent protein 97.5 0.86 1.9E-05 59.8 53.1 134 860-999 627-763 (2341)
149 KOG2759 Vacuolar H+-ATPase V1 97.4 0.18 3.8E-06 52.6 25.8 354 56-447 65-438 (442)
150 PF05918 API5: Apoptosis inhib 97.4 0.17 3.7E-06 56.3 27.6 196 68-281 33-228 (556)
151 KOG4653 Uncharacterized conser 97.4 0.022 4.8E-07 64.2 20.7 200 420-632 729-928 (982)
152 KOG0946 ER-Golgi vesicle-tethe 97.4 0.26 5.7E-06 55.4 28.3 343 106-467 25-418 (970)
153 PF13251 DUF4042: Domain of un 97.3 0.0028 6E-08 59.3 11.5 143 392-534 1-176 (182)
154 PF02985 HEAT: HEAT repeat; I 97.3 0.00034 7.4E-09 44.0 3.8 30 924-953 1-30 (31)
155 PLN03076 ARF guanine nucleotid 97.3 1.2 2.5E-05 57.5 45.0 198 68-268 1148-1384(1780)
156 PF05918 API5: Apoptosis inhib 97.2 0.051 1.1E-06 60.2 21.8 142 423-585 28-170 (556)
157 KOG2160 Armadillo/beta-catenin 97.2 0.021 4.6E-07 58.3 17.3 147 388-536 94-244 (342)
158 KOG1517 Guanine nucleotide bin 97.2 0.046 9.9E-07 63.0 21.4 147 390-537 570-737 (1387)
159 PF13251 DUF4042: Domain of un 97.2 0.0052 1.1E-07 57.5 11.8 141 119-262 1-176 (182)
160 COG1413 FOG: HEAT repeat [Ener 97.1 0.074 1.6E-06 57.4 22.0 254 143-492 43-306 (335)
161 KOG0889 Histone acetyltransfer 97.1 2.1 4.4E-05 57.3 55.6 358 178-541 715-1164(3550)
162 KOG1293 Proteins containing ar 97.1 0.66 1.4E-05 51.4 32.4 428 116-576 65-532 (678)
163 PF02985 HEAT: HEAT repeat; I 97.1 0.00072 1.6E-08 42.5 3.6 30 419-448 1-30 (31)
164 COG1413 FOG: HEAT repeat [Ener 97.1 0.14 3.1E-06 55.2 23.6 262 184-532 43-304 (335)
165 PF04826 Arm_2: Armadillo-like 97.0 0.022 4.8E-07 57.2 15.5 187 106-304 15-206 (254)
166 KOG4524 Uncharacterized conser 97.0 1.1 2.4E-05 52.1 52.3 101 710-826 801-901 (1014)
167 KOG4500 Rho/Rac GTPase guanine 97.0 0.39 8.4E-06 50.1 23.4 137 376-516 314-458 (604)
168 PF13001 Ecm29: Proteasome sta 96.9 0.67 1.4E-05 52.6 27.4 81 26-114 27-113 (501)
169 KOG2933 Uncharacterized conser 96.9 0.017 3.7E-07 57.2 12.5 134 852-998 100-233 (334)
170 TIGR02270 conserved hypothetic 96.9 0.4 8.6E-06 52.2 24.3 241 105-447 56-296 (410)
171 PF11865 DUF3385: Domain of un 96.9 0.011 2.5E-07 54.7 11.0 145 375-533 8-158 (160)
172 PF08064 UME: UME (NUC010) dom 96.9 0.016 3.5E-07 49.4 10.9 98 496-599 4-105 (107)
173 KOG1243 Protein kinase [Genera 96.7 0.025 5.4E-07 62.7 13.8 255 241-535 264-518 (690)
174 KOG0414 Chromosome condensatio 96.7 2.1 4.6E-05 51.0 55.4 165 10-175 255-431 (1251)
175 PF01603 B56: Protein phosphat 96.7 0.14 3.1E-06 56.1 19.6 240 20-271 131-381 (409)
176 PF12719 Cnd3: Nuclear condens 96.7 0.15 3.2E-06 53.6 19.1 123 380-511 30-160 (298)
177 smart00802 UME Domain in UVSB 96.7 0.026 5.7E-07 47.6 10.4 97 496-598 4-104 (107)
178 PF08569 Mo25: Mo25-like; Int 96.6 1.3 2.7E-05 46.8 24.5 181 116-304 88-284 (335)
179 KOG2160 Armadillo/beta-catenin 96.5 0.017 3.7E-07 58.9 10.2 106 892-1003 93-200 (342)
180 KOG1949 Uncharacterized conser 96.5 0.19 4.2E-06 55.5 18.4 220 68-304 99-332 (1005)
181 TIGR02270 conserved hypothetic 96.5 1.2 2.5E-05 48.7 24.2 154 19-212 51-205 (410)
182 KOG2149 Uncharacterized conser 96.4 0.077 1.7E-06 55.2 13.9 133 420-554 60-192 (393)
183 PF08064 UME: UME (NUC010) dom 96.3 0.064 1.4E-06 45.8 11.1 80 892-973 25-105 (107)
184 PF10521 DUF2454: Protein of u 96.3 0.066 1.4E-06 55.5 13.6 145 411-556 112-277 (282)
185 PF12719 Cnd3: Nuclear condens 96.3 0.4 8.6E-06 50.4 19.3 110 102-215 26-144 (298)
186 KOG2062 26S proteasome regulat 96.0 0.099 2.1E-06 58.1 13.3 156 378-555 520-676 (929)
187 smart00802 UME Domain in UVSB 96.0 0.065 1.4E-06 45.3 9.5 97 411-511 4-104 (107)
188 KOG2025 Chromosome condensatio 95.9 3.9 8.4E-05 46.0 24.8 220 7-256 20-255 (892)
189 KOG1851 Uncharacterized conser 95.9 6.7 0.00014 48.6 31.8 175 357-537 1506-1683(1710)
190 PF12231 Rif1_N: Rap1-interact 95.9 3.3 7.2E-05 45.0 31.4 266 287-575 59-350 (372)
191 KOG1517 Guanine nucleotide bin 95.8 0.57 1.2E-05 54.6 18.5 232 21-265 471-737 (1387)
192 COG5116 RPN2 26S proteasome re 95.8 0.075 1.6E-06 57.0 10.8 154 380-555 519-673 (926)
193 PF11865 DUF3385: Domain of un 95.7 0.13 2.9E-06 47.7 11.0 72 882-953 87-158 (160)
194 PF08767 CRM1_C: CRM1 C termin 95.6 1.9 4E-05 45.7 20.7 102 389-490 132-244 (319)
195 KOG0803 Predicted E3 ubiquitin 95.6 1.9 4E-05 53.5 22.6 109 186-301 43-151 (1312)
196 PF03224 V-ATPase_H_N: V-ATPas 95.5 0.6 1.3E-05 49.5 16.8 201 53-264 52-273 (312)
197 PF12231 Rif1_N: Rap1-interact 95.5 4.7 0.0001 43.8 33.0 281 431-796 59-351 (372)
198 PF01603 B56: Protein phosphat 95.5 0.77 1.7E-05 50.5 17.9 244 709-1003 129-374 (409)
199 PF10363 DUF2435: Protein of u 95.4 0.12 2.6E-06 42.4 8.5 73 924-1003 4-76 (92)
200 KOG1243 Protein kinase [Genera 95.4 0.33 7.1E-06 54.3 14.3 189 100-303 327-515 (690)
201 KOG2122 Beta-catenin-binding p 95.3 6.7 0.00015 48.1 24.9 73 923-1002 530-604 (2195)
202 KOG2137 Protein kinase [Signal 95.3 2.7 5.9E-05 47.6 20.8 149 123-281 369-517 (700)
203 KOG2549 Transcription initiati 95.2 1.7 3.7E-05 47.3 18.2 166 414-596 207-389 (576)
204 cd08050 TAF6 TATA Binding Prot 95.1 0.25 5.5E-06 52.6 12.3 130 863-997 198-338 (343)
205 cd00256 VATPase_H VATPase_H, r 95.1 6.4 0.00014 43.0 28.4 347 15-405 45-424 (429)
206 PF08767 CRM1_C: CRM1 C termin 95.1 2 4.4E-05 45.3 18.8 108 518-628 42-155 (319)
207 PF10521 DUF2454: Protein of u 95.1 0.48 1E-05 49.2 14.0 146 139-285 115-278 (282)
208 KOG2137 Protein kinase [Signal 95.0 8.2 0.00018 44.0 23.5 174 317-514 345-519 (700)
209 COG5095 TAF6 Transcription ini 94.9 1.3 2.9E-05 43.8 15.2 150 412-577 195-359 (450)
210 PF13001 Ecm29: Proteasome sta 94.7 10 0.00022 43.2 29.0 175 355-536 254-447 (501)
211 KOG2149 Uncharacterized conser 94.7 0.84 1.8E-05 47.8 14.0 130 144-278 59-188 (393)
212 PF12054 DUF3535: Domain of un 94.5 8.4 0.00018 42.8 22.5 78 432-514 101-179 (441)
213 KOG2025 Chromosome condensatio 94.4 11 0.00024 42.6 33.6 109 373-486 81-189 (892)
214 PF11864 DUF3384: Domain of un 94.4 11 0.00024 42.5 37.1 245 37-304 5-286 (464)
215 PF08623 TIP120: TATA-binding 94.4 0.15 3.2E-06 47.0 7.1 120 875-997 3-145 (169)
216 PF04118 Dopey_N: Dopey, N-ter 94.2 8.1 0.00018 40.2 24.2 163 120-303 5-167 (307)
217 KOG0889 Histone acetyltransfer 94.2 32 0.0007 47.0 52.0 138 787-955 650-799 (3550)
218 PF08623 TIP120: TATA-binding 94.1 1.5 3.2E-05 40.6 13.0 97 455-555 4-117 (169)
219 PF05536 Neurochondrin: Neuroc 93.9 15 0.00033 42.1 33.3 238 142-409 4-264 (543)
220 KOG3961 Uncharacterized conser 93.8 0.15 3.2E-06 47.6 5.9 91 882-973 115-208 (262)
221 KOG1949 Uncharacterized conser 93.8 0.71 1.5E-05 51.3 11.9 148 380-530 177-329 (1005)
222 COG5218 YCG1 Chromosome conden 93.8 2.5 5.4E-05 46.2 15.6 122 78-208 68-193 (885)
223 cd08050 TAF6 TATA Binding Prot 93.7 0.47 1E-05 50.6 10.5 128 360-488 197-338 (343)
224 KOG0567 HEAT repeat-containing 93.7 6.8 0.00015 38.7 16.9 58 420-489 69-128 (289)
225 PF10363 DUF2435: Protein of u 93.5 0.82 1.8E-05 37.6 9.1 83 461-553 4-86 (92)
226 COG5095 TAF6 Transcription ini 93.4 2.2 4.7E-05 42.4 13.2 142 373-515 230-384 (450)
227 PF12054 DUF3535: Domain of un 93.3 16 0.00035 40.6 22.6 57 157-217 101-158 (441)
228 KOG1525 Sister chromatid cohes 93.3 29 0.00063 43.5 40.2 294 115-448 61-406 (1266)
229 KOG2549 Transcription initiati 93.2 2.9 6.4E-05 45.6 15.1 151 359-514 225-394 (576)
230 KOG1048 Neural adherens juncti 93.2 11 0.00025 43.3 20.3 109 421-533 236-350 (717)
231 KOG1048 Neural adherens juncti 93.2 20 0.00044 41.4 25.3 101 388-490 530-641 (717)
232 PF05536 Neurochondrin: Neuroc 93.0 21 0.00045 41.0 37.8 136 157-304 71-214 (543)
233 PF01347 Vitellogenin_N: Lipop 92.8 2.9 6.2E-05 49.7 16.5 151 358-529 414-586 (618)
234 PF04118 Dopey_N: Dopey, N-ter 92.6 3.8 8.1E-05 42.6 14.7 157 379-537 13-172 (307)
235 PF14664 RICTOR_N: Rapamycin-i 92.5 18 0.00038 39.2 20.2 235 139-406 21-269 (371)
236 KOG3036 Protein involved in ce 92.4 5.8 0.00013 38.6 14.2 202 1-214 1-247 (293)
237 KOG2022 Nuclear transport rece 92.2 28 0.00062 40.7 69.2 377 519-976 440-850 (982)
238 smart00638 LPD_N Lipoprotein N 92.2 7.3 0.00016 45.7 18.6 135 378-529 394-542 (574)
239 PF01347 Vitellogenin_N: Lipop 91.8 11 0.00024 44.7 19.9 211 13-257 353-586 (618)
240 KOG1837 Uncharacterized conser 91.7 45 0.00097 42.0 37.4 98 859-961 1523-1620(1621)
241 KOG3961 Uncharacterized conser 91.7 0.71 1.5E-05 43.3 7.2 93 458-552 112-207 (262)
242 PF03224 V-ATPase_H_N: V-ATPas 91.6 8.2 0.00018 40.9 16.5 132 419-556 106-251 (312)
243 COG5101 CRM1 Importin beta-rel 91.6 27 0.00058 39.1 49.3 74 139-215 188-262 (1053)
244 KOG2213 Apoptosis inhibitor 5/ 91.4 15 0.00033 38.4 16.8 61 475-535 255-317 (460)
245 PF00790 VHS: VHS domain; Int 91.2 4.6 0.0001 36.6 12.2 96 499-594 38-135 (140)
246 PF12333 Ipi1_N: Rix1 complex 91.1 2.1 4.5E-05 36.2 9.0 62 915-976 3-65 (102)
247 cd03568 VHS_STAM VHS domain fa 91.0 3.5 7.6E-05 37.4 11.1 101 386-494 13-114 (144)
248 cd03561 VHS VHS domain family; 91.0 3.8 8.3E-05 36.8 11.3 78 417-494 36-116 (133)
249 KOG4500 Rho/Rac GTPase guanine 90.9 24 0.00053 37.5 17.9 158 140-304 312-476 (604)
250 COG5116 RPN2 26S proteasome re 90.8 9.7 0.00021 41.7 15.4 157 108-287 520-677 (926)
251 KOG2759 Vacuolar H+-ATPase V1 90.7 26 0.00056 37.4 25.2 70 418-490 366-438 (442)
252 KOG3036 Protein involved in ce 90.7 8.7 0.00019 37.4 13.5 90 865-954 103-199 (293)
253 PF12333 Ipi1_N: Rix1 complex 90.7 2.1 4.6E-05 36.1 8.8 62 410-471 3-64 (102)
254 PF08161 NUC173: NUC173 domain 90.6 5.1 0.00011 38.7 12.4 121 507-641 4-124 (198)
255 KOG0567 HEAT repeat-containing 90.5 20 0.00043 35.6 18.2 63 374-446 215-279 (289)
256 PF12530 DUF3730: Protein of u 90.3 22 0.00047 35.8 20.7 198 33-246 12-218 (234)
257 PF00514 Arm: Armadillo/beta-c 90.1 0.56 1.2E-05 31.7 3.9 29 924-952 13-41 (41)
258 PF12074 DUF3554: Domain of un 90.0 31 0.00067 37.1 19.5 221 100-333 19-256 (339)
259 KOG1851 Uncharacterized conser 89.8 66 0.0014 40.6 35.9 140 433-580 1502-1641(1710)
260 cd03569 VHS_Hrs_Vps27p VHS dom 89.8 6.7 0.00015 35.6 11.8 79 417-495 40-119 (142)
261 KOG0413 Uncharacterized conser 89.5 52 0.0011 39.0 37.7 127 373-511 964-1091(1529)
262 cd03568 VHS_STAM VHS domain fa 89.2 4.2 9.1E-05 36.9 10.0 76 376-451 36-114 (144)
263 PF08389 Xpo1: Exportin 1-like 89.0 3.8 8.3E-05 37.7 10.2 105 375-485 24-148 (148)
264 PF12830 Nipped-B_C: Sister ch 88.0 15 0.00034 35.2 13.7 65 23-88 9-76 (187)
265 PF00514 Arm: Armadillo/beta-c 87.9 1 2.2E-05 30.4 4.0 29 418-446 12-40 (41)
266 PF09324 DUF1981: Domain of un 87.7 4.9 0.00011 32.6 8.6 70 182-256 15-84 (86)
267 PF04078 Rcd1: Cell differenti 87.5 9.6 0.00021 37.9 11.8 95 859-954 69-170 (262)
268 PF11698 V-ATPase_H_C: V-ATPas 87.4 2.5 5.4E-05 36.4 6.8 69 419-490 44-115 (119)
269 KOG2062 26S proteasome regulat 87.4 61 0.0013 37.3 40.6 123 855-995 570-692 (929)
270 smart00288 VHS Domain present 87.3 11 0.00024 33.8 11.4 77 417-493 36-114 (133)
271 PF12530 DUF3730: Protein of u 87.0 36 0.00078 34.2 22.2 199 61-284 5-215 (234)
272 cd03567 VHS_GGA VHS domain fam 86.5 17 0.00036 32.8 12.0 101 385-493 13-119 (139)
273 KOG4199 Uncharacterized conser 86.5 42 0.00092 34.6 20.4 134 855-994 299-439 (461)
274 PF14664 RICTOR_N: Rapamycin-i 85.7 57 0.0012 35.3 20.5 232 232-492 26-271 (371)
275 KOG1525 Sister chromatid cohes 85.5 1.1E+02 0.0025 38.6 59.8 160 358-520 242-441 (1266)
276 KOG2085 Serine/threonine prote 85.4 16 0.00035 38.6 12.6 100 164-269 320-423 (457)
277 PF00790 VHS: VHS domain; Int 85.4 11 0.00024 34.2 10.6 78 416-493 40-121 (140)
278 PF09324 DUF1981: Domain of un 85.2 5.4 0.00012 32.4 7.6 67 882-948 18-84 (86)
279 KOG0929 Guanine nucleotide exc 85.0 45 0.00097 42.3 18.1 160 116-281 1049-1225(1514)
280 KOG2005 26S proteasome regulat 85.0 51 0.0011 37.4 16.7 67 144-215 416-482 (878)
281 PF11698 V-ATPase_H_C: V-ATPas 84.4 3.7 8.1E-05 35.3 6.5 72 923-1001 43-117 (119)
282 PF11935 DUF3453: Domain of un 84.2 49 0.0011 33.3 16.0 126 193-329 2-161 (239)
283 KOG0803 Predicted E3 ubiquitin 83.9 66 0.0014 40.7 19.0 105 384-490 48-153 (1312)
284 cd03561 VHS VHS domain family; 83.7 6.5 0.00014 35.3 8.2 78 458-536 35-116 (133)
285 KOG2199 Signal transducing ada 83.1 9.8 0.00021 39.7 9.8 111 377-495 12-123 (462)
286 smart00288 VHS Domain present 83.1 28 0.00062 31.2 12.0 79 500-580 34-114 (133)
287 cd03569 VHS_Hrs_Vps27p VHS dom 83.0 17 0.00036 33.0 10.5 77 142-218 40-118 (142)
288 PF12074 DUF3554: Domain of un 82.6 75 0.0016 34.2 19.0 176 372-554 56-254 (339)
289 COG5231 VMA13 Vacuolar H+-ATPa 82.6 61 0.0013 33.2 19.4 69 379-447 358-428 (432)
290 PF04388 Hamartin: Hamartin pr 82.0 1.2E+02 0.0026 36.1 20.5 152 23-196 5-164 (668)
291 KOG1789 Endocytosis protein RM 81.9 1.3E+02 0.0028 36.4 23.3 138 159-304 1741-1884(2235)
292 KOG2011 Sister chromatid cohes 81.1 1.4E+02 0.0031 36.5 22.3 128 394-525 262-392 (1048)
293 PF08161 NUC173: NUC173 domain 80.9 56 0.0012 31.7 14.6 59 395-453 18-76 (198)
294 cd03567 VHS_GGA VHS domain fam 80.8 18 0.0004 32.5 9.9 75 377-451 38-120 (139)
295 PF08713 DNA_alkylation: DNA a 80.3 37 0.0008 33.5 13.2 145 376-544 50-196 (213)
296 PF11701 UNC45-central: Myosin 80.1 21 0.00045 33.2 10.4 131 855-997 20-157 (157)
297 KOG2122 Beta-catenin-binding p 79.6 1.8E+02 0.004 36.8 25.2 72 378-449 531-603 (2195)
298 PF12765 Cohesin_HEAT: HEAT re 79.5 2.7 5.9E-05 28.5 3.2 25 417-441 17-41 (42)
299 KOG2038 CAATT-binding transcri 79.3 1.3E+02 0.0029 35.0 30.7 109 181-303 301-409 (988)
300 PF07571 DUF1546: Protein of u 79.2 10 0.00022 31.3 7.2 60 934-997 17-76 (92)
301 cd03572 ENTH_epsin_related ENT 79.1 8.8 0.00019 33.4 6.9 76 139-214 34-119 (122)
302 PF04510 DUF577: Family of unk 78.9 10 0.00022 34.9 7.5 37 521-557 60-97 (174)
303 cd03565 VHS_Tom1 VHS domain fa 78.2 41 0.0009 30.5 11.4 102 385-494 13-119 (141)
304 smart00638 LPD_N Lipoprotein N 77.8 1.5E+02 0.0033 34.8 26.1 98 376-487 445-542 (574)
305 PF08146 BP28CT: BP28CT (NUC21 77.4 42 0.00092 30.9 11.4 97 859-955 40-150 (153)
306 PF11919 DUF3437: Domain of un 76.8 4 8.7E-05 33.3 4.0 61 392-453 4-64 (90)
307 COG5098 Chromosome condensatio 76.5 1.5E+02 0.0033 34.1 48.4 107 107-216 303-417 (1128)
308 PF07571 DUF1546: Protein of u 76.0 16 0.00035 30.2 7.4 58 852-909 18-76 (92)
309 KOG2973 Uncharacterized conser 76.0 23 0.00051 36.0 9.7 105 381-490 7-111 (353)
310 KOG3678 SARM protein (with ste 75.9 1E+02 0.0023 33.2 14.7 110 20-135 178-295 (832)
311 cd00197 VHS_ENTH_ANTH VHS, ENT 75.1 40 0.00086 29.3 10.3 74 373-446 33-114 (115)
312 cd03572 ENTH_epsin_related ENT 75.0 49 0.0011 28.9 10.3 75 415-490 35-119 (122)
313 COG5098 Chromosome condensatio 74.5 1.7E+02 0.0036 33.7 59.1 130 359-493 283-418 (1128)
314 COG5218 YCG1 Chromosome conden 74.4 1.5E+02 0.0034 33.2 39.4 107 373-484 87-193 (885)
315 COG5209 RCD1 Uncharacterized p 74.1 17 0.00037 34.8 7.8 72 882-953 146-219 (315)
316 KOG2011 Sister chromatid cohes 73.8 2.3E+02 0.005 34.9 22.6 99 193-300 296-396 (1048)
317 PF04388 Hamartin: Hamartin pr 73.6 21 0.00046 42.0 10.5 79 896-974 82-162 (668)
318 KOG0929 Guanine nucleotide exc 73.3 1.3E+02 0.0028 38.5 17.0 77 395-471 1243-1322(1514)
319 PF14225 MOR2-PAG1_C: Cell mor 72.9 1E+02 0.0022 31.5 13.8 140 378-535 112-257 (262)
320 PF12397 U3snoRNP10: U3 small 72.8 41 0.00089 29.5 9.9 73 373-448 2-75 (121)
321 PF12783 Sec7_N: Guanine nucle 72.5 76 0.0016 29.9 12.3 106 198-303 35-146 (168)
322 PF11701 UNC45-central: Myosin 71.5 20 0.00043 33.3 7.9 131 354-487 21-156 (157)
323 PF08569 Mo25: Mo25-like; Int 70.4 1.5E+02 0.0033 31.5 28.7 107 386-493 173-286 (335)
324 PF12397 U3snoRNP10: U3 small 69.9 77 0.0017 27.8 11.0 74 414-492 2-76 (121)
325 PF14631 FancD2: Fanconi anaem 69.8 34 0.00074 44.1 11.7 119 409-534 426-544 (1426)
326 KOG2973 Uncharacterized conser 69.8 22 0.00048 36.1 7.9 106 421-532 6-111 (353)
327 PF12765 Cohesin_HEAT: HEAT re 69.5 6.9 0.00015 26.6 3.2 27 182-209 16-42 (42)
328 PF14222 MOR2-PAG1_N: Cell mor 69.1 2.2E+02 0.0049 32.9 32.9 411 95-535 27-503 (552)
329 PF03542 Tuberin: Tuberin; In 69.0 1.7E+02 0.0037 31.4 18.5 176 140-331 138-329 (356)
330 KOG3678 SARM protein (with ste 69.0 49 0.0011 35.5 10.6 138 854-1000 196-337 (832)
331 cd03565 VHS_Tom1 VHS domain fa 69.0 54 0.0012 29.7 9.8 76 377-452 38-120 (141)
332 COG5657 CSE1 CAS/CSE protein i 68.8 2.6E+02 0.0057 33.5 45.7 155 67-239 14-178 (947)
333 PF12830 Nipped-B_C: Sister ch 68.7 1.1E+02 0.0025 29.3 16.2 69 106-177 11-79 (187)
334 PF12726 SEN1_N: SEN1 N termin 68.3 2.8E+02 0.006 33.7 37.3 163 104-269 78-252 (727)
335 smart00185 ARM Armadillo/beta- 67.8 7.4 0.00016 25.9 3.2 28 419-446 13-40 (41)
336 smart00185 ARM Armadillo/beta- 67.8 7.5 0.00016 25.9 3.3 28 924-951 13-40 (41)
337 PF12783 Sec7_N: Guanine nucle 67.7 67 0.0014 30.2 10.8 98 391-490 36-146 (168)
338 cd00197 VHS_ENTH_ANTH VHS, ENT 67.4 83 0.0018 27.3 10.7 74 415-488 34-113 (115)
339 KOG2199 Signal transducing ada 66.7 74 0.0016 33.6 11.0 79 374-452 42-123 (462)
340 PF14668 RICTOR_V: Rapamycin-i 66.3 18 0.00039 28.2 5.3 55 393-449 3-60 (73)
341 KOG1877 Putative transmembrane 65.2 2.5E+02 0.0055 33.5 16.2 285 349-643 28-348 (819)
342 KOG2038 CAATT-binding transcri 64.7 2.9E+02 0.0062 32.5 25.8 75 228-311 301-375 (988)
343 PF14868 DUF4487: Domain of un 63.1 2.8E+02 0.0061 31.9 25.6 75 882-956 480-556 (559)
344 PF14838 INTS5_C: Integrator c 62.5 3.1E+02 0.0068 32.2 23.6 82 194-276 320-405 (696)
345 PF08713 DNA_alkylation: DNA a 62.5 29 0.00064 34.2 7.7 96 854-964 100-196 (213)
346 PF03542 Tuberin: Tuberin; In 62.4 1.4E+02 0.003 32.1 12.8 77 897-976 212-288 (356)
347 PF08146 BP28CT: BP28CT (NUC21 62.1 91 0.002 28.8 10.1 76 199-281 35-117 (153)
348 KOG1848 Uncharacterized conser 62.1 4.3E+02 0.0093 33.6 27.3 153 116-268 854-1034(1610)
349 PF11229 DUF3028: Protein of u 62.0 2.6E+02 0.0057 31.1 17.3 248 706-996 91-350 (589)
350 cd00872 PI3Ka_I Phosphoinositi 60.6 42 0.00091 31.5 7.6 81 20-116 37-118 (171)
351 KOG1837 Uncharacterized conser 59.3 5E+02 0.011 33.5 37.0 100 477-586 1520-1619(1621)
352 PF12726 SEN1_N: SEN1 N termin 58.9 4E+02 0.0088 32.3 36.2 123 417-540 119-251 (727)
353 KOG1087 Cytosolic sorting prot 58.9 1.4E+02 0.003 33.3 12.2 103 384-494 12-116 (470)
354 PF11919 DUF3437: Domain of un 58.0 28 0.00061 28.5 5.3 58 898-956 5-62 (90)
355 COG4912 Predicted DNA alkylati 57.9 61 0.0013 31.5 8.2 84 361-450 102-186 (222)
356 PF04078 Rcd1: Cell differenti 57.8 2.2E+02 0.0047 28.8 14.7 71 144-215 96-169 (262)
357 KOG1848 Uncharacterized conser 57.3 5.1E+02 0.011 33.0 26.5 159 778-955 1007-1189(1610)
358 KOG2213 Apoptosis inhibitor 5/ 57.0 2.7E+02 0.0059 29.7 21.0 53 685-742 38-90 (460)
359 COG5369 Uncharacterized conser 56.6 36 0.00078 37.4 7.1 135 395-532 407-545 (743)
360 cd06561 AlkD_like A new struct 55.3 48 0.001 32.2 7.7 66 380-451 108-174 (197)
361 PLN03205 ATR interacting prote 54.7 2.9E+02 0.0063 29.4 16.1 136 122-259 302-445 (652)
362 cd00870 PI3Ka_III Phosphoinosi 54.5 62 0.0013 30.3 7.7 80 21-116 45-125 (166)
363 PF14961 BROMI: Broad-minded p 53.2 2.3E+02 0.005 35.3 13.6 137 145-283 163-316 (1296)
364 PF11707 Npa1: Ribosome 60S bi 52.6 3.2E+02 0.0069 29.2 21.8 72 233-304 58-144 (330)
365 PF05327 RRN3: RNA polymerase 52.1 4.4E+02 0.0096 30.7 24.5 54 920-973 343-398 (563)
366 COG5369 Uncharacterized conser 51.8 2.1E+02 0.0046 31.9 11.8 113 378-491 432-546 (743)
367 KOG4199 Uncharacterized conser 51.4 3.1E+02 0.0067 28.7 29.9 318 139-489 104-443 (461)
368 cd00864 PI3Ka Phosphoinositide 50.3 1.2E+02 0.0027 27.9 8.9 81 20-116 37-118 (152)
369 COG5537 IRR1 Cohesin [Cell div 49.1 4.6E+02 0.0099 30.0 19.5 115 413-531 269-385 (740)
370 PF12612 TFCD_C: Tubulin foldi 49.1 2.6E+02 0.0056 27.1 14.9 153 100-261 4-159 (193)
371 PF12612 TFCD_C: Tubulin foldi 48.9 1.5E+02 0.0032 28.7 9.8 133 415-555 4-138 (193)
372 smart00145 PI3Ka Phosphoinosit 47.9 1.4E+02 0.0031 28.5 9.1 80 20-115 42-122 (184)
373 PF11935 DUF3453: Domain of un 47.4 3.1E+02 0.0068 27.6 15.2 92 182-274 41-159 (239)
374 KOG2081 Nuclear transport regu 46.5 4.8E+02 0.01 29.5 37.9 235 387-641 257-514 (559)
375 PF04869 Uso1_p115_head: Uso1 46.3 1.7E+02 0.0037 30.8 10.2 153 389-552 50-207 (312)
376 PF03130 HEAT_PBS: PBS lyase H 46.1 14 0.00031 22.1 1.4 14 939-952 1-14 (27)
377 PF10350 DUF2428: Putative dea 46.0 3.4E+02 0.0074 27.7 15.1 144 803-975 89-251 (255)
378 cd06561 AlkD_like A new struct 46.0 1.8E+02 0.004 28.0 10.2 69 892-965 115-183 (197)
379 PF10193 Telomere_reg-2: Telom 45.8 96 0.0021 26.9 7.0 70 925-996 5-79 (114)
380 PF00613 PI3Ka: Phosphoinositi 45.8 78 0.0017 30.3 7.1 80 20-115 43-123 (184)
381 KOG1087 Cytosolic sorting prot 45.3 1.7E+02 0.0036 32.7 10.3 94 501-596 36-132 (470)
382 cd00869 PI3Ka_II Phosphoinosit 44.5 1.9E+02 0.0042 27.1 9.1 80 20-115 37-117 (169)
383 PF10350 DUF2428: Putative dea 44.4 3.6E+02 0.0079 27.5 14.0 159 391-552 61-248 (255)
384 KOG2256 Predicted protein invo 44.1 5.7E+02 0.012 29.6 18.9 181 415-597 279-475 (661)
385 PF14668 RICTOR_V: Rapamycin-i 43.0 71 0.0015 25.0 5.1 54 435-491 4-59 (73)
386 cd03562 CID CID (CTD-Interacti 41.8 1.9E+02 0.0041 24.9 8.5 85 430-525 17-101 (114)
387 PF11707 Npa1: Ribosome 60S bi 41.3 4.7E+02 0.01 27.9 17.4 155 145-303 58-237 (330)
388 cd04381 RhoGap_RalBP1 RhoGap_R 41.1 1.2E+02 0.0026 29.0 7.7 88 901-997 73-160 (182)
389 PF01465 GRIP: GRIP domain; I 40.8 67 0.0015 22.4 4.2 34 100-134 4-37 (46)
390 smart00567 EZ_HEAT E-Z type HE 39.8 59 0.0013 19.8 3.6 13 938-950 2-14 (30)
391 PF11841 DUF3361: Domain of un 39.6 3.1E+02 0.0068 25.4 10.9 102 855-957 32-136 (160)
392 COG5209 RCD1 Uncharacterized p 39.2 1.1E+02 0.0025 29.5 6.7 98 896-1000 114-219 (315)
393 cd00870 PI3Ka_III Phosphoinosi 39.1 3.3E+02 0.0072 25.5 10.6 97 36-156 28-125 (166)
394 PF14911 MMS22L_C: S-phase gen 38.9 5.4E+02 0.012 27.9 21.3 263 687-972 44-349 (373)
395 KOG2256 Predicted protein invo 37.9 7E+02 0.015 28.9 25.3 202 434-639 258-473 (661)
396 PF14222 MOR2-PAG1_N: Cell mor 37.3 7.2E+02 0.016 28.9 27.9 155 107-266 133-308 (552)
397 cd00869 PI3Ka_II Phosphoinosit 36.7 2.7E+02 0.0058 26.2 8.8 97 36-156 21-118 (169)
398 cd04379 RhoGAP_SYD1 RhoGAP_SYD 35.9 1.3E+02 0.0028 29.5 7.1 97 901-1003 75-171 (207)
399 cd00872 PI3Ka_I Phosphoinositi 35.8 3.4E+02 0.0074 25.6 9.4 97 35-155 20-117 (171)
400 KOG1222 Kinesin associated pro 35.3 6.5E+02 0.014 27.8 22.6 75 372-448 589-664 (791)
401 PF14225 MOR2-PAG1_C: Cell mor 35.2 5.1E+02 0.011 26.5 20.0 125 120-262 131-256 (262)
402 cd04374 RhoGAP_Graf RhoGAP_Gra 33.2 1.7E+02 0.0036 28.6 7.3 90 901-999 88-177 (203)
403 PF09759 Atx10homo_assoc: Spin 33.1 1.2E+02 0.0026 25.6 5.4 57 899-956 3-63 (102)
404 PF14228 MOR2-PAG1_mid: Cell m 32.0 1.2E+03 0.026 29.8 24.3 69 419-490 504-572 (1120)
405 PF07539 DRIM: Down-regulated 31.5 1.9E+02 0.0042 26.2 6.9 30 417-446 16-45 (141)
406 KOG1104 Nuclear cap-binding co 31.4 8.1E+02 0.018 29.0 12.9 62 373-437 103-167 (759)
407 COG1698 Uncharacterized protei 31.2 2E+02 0.0044 23.2 5.8 36 16-51 7-48 (93)
408 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 29.5 2.3E+02 0.0049 27.5 7.6 91 901-1000 72-162 (196)
409 KOG2005 26S proteasome regulat 28.7 9.9E+02 0.022 27.9 15.2 79 903-995 622-700 (878)
410 KOG4646 Uncharacterized conser 28.3 4.4E+02 0.0095 23.6 11.2 97 389-491 29-129 (173)
411 PF14228 MOR2-PAG1_mid: Cell m 28.3 1.4E+03 0.029 29.3 16.0 53 249-303 934-986 (1120)
412 COG5231 VMA13 Vacuolar H+-ATPa 28.1 7.1E+02 0.015 26.0 21.0 71 419-490 357-428 (432)
413 PF14631 FancD2: Fanconi anaem 27.8 1.6E+03 0.034 29.9 29.9 112 372-489 430-541 (1426)
414 PF11841 DUF3361: Domain of un 27.7 5E+02 0.011 24.1 13.4 99 161-264 35-135 (160)
415 PF09759 Atx10homo_assoc: Spin 27.6 2.5E+02 0.0055 23.7 6.4 56 394-450 3-62 (102)
416 PF14961 BROMI: Broad-minded p 27.4 1.7E+02 0.0038 36.2 7.3 72 106-177 164-236 (1296)
417 smart00755 Grip golgin-97, Ran 27.4 1.3E+02 0.0028 21.0 3.8 33 100-134 3-35 (46)
418 PF12243 CTK3: CTD kinase subu 27.2 4.7E+02 0.01 23.7 11.2 79 464-553 12-93 (139)
419 cd00871 PI4Ka Phosphoinositide 27.1 5E+02 0.011 24.6 8.9 62 39-116 55-118 (175)
420 smart00324 RhoGAP GTPase-activ 26.7 2.7E+02 0.0059 26.2 7.6 94 901-1003 58-151 (174)
421 PF06371 Drf_GBD: Diaphanous G 26.5 4.8E+02 0.01 24.8 9.5 60 429-489 127-186 (187)
422 KOG3723 PH domain protein Melt 26.4 9.9E+02 0.021 27.1 12.8 214 402-642 18-248 (851)
423 cd07064 AlkD_like_1 A new stru 26.2 3E+02 0.0065 27.0 7.9 96 862-964 96-191 (208)
424 cd04385 RhoGAP_ARAP RhoGAP_ARA 26.1 2.4E+02 0.0053 27.0 7.1 91 901-1000 71-161 (184)
425 cd04372 RhoGAP_chimaerin RhoGA 26.0 2.6E+02 0.0057 27.0 7.4 93 901-1002 73-165 (194)
426 smart00145 PI3Ka Phosphoinosit 25.7 1.8E+02 0.004 27.8 6.0 78 416-508 42-119 (184)
427 PF14676 FANCI_S2: FANCI solen 25.1 5.6E+02 0.012 23.8 10.0 117 76-209 37-156 (158)
428 KOG3687 Tuberin - Rap/ran-GTPa 25.0 1.4E+03 0.029 28.2 34.7 34 765-798 647-680 (1697)
429 PF08822 DUF1804: Protein of u 25.0 5.7E+02 0.012 23.8 10.5 93 864-971 64-156 (165)
430 cd04373 RhoGAP_p190 RhoGAP_p19 24.9 3.4E+02 0.0073 26.0 7.8 89 901-998 70-158 (185)
431 cd03571 ENTH_epsin ENTH domain 24.5 4.5E+02 0.0098 23.2 7.7 53 127-179 21-75 (123)
432 cd04377 RhoGAP_myosin_IX RhoGA 24.3 4E+02 0.0087 25.5 8.3 93 902-1003 70-162 (186)
433 cd04384 RhoGAP_CdGAP RhoGAP_Cd 24.1 2.9E+02 0.0063 26.8 7.2 93 901-1002 74-166 (195)
434 cd04407 RhoGAP_myosin_IXB RhoG 24.0 3E+02 0.0065 26.4 7.2 94 901-1003 69-162 (186)
435 cd03562 CID CID (CTD-Interacti 23.9 2.5E+02 0.0053 24.2 6.2 70 142-212 36-106 (114)
436 cd04382 RhoGAP_MgcRacGAP RhoGA 23.7 3.2E+02 0.0069 26.4 7.4 90 901-1000 71-160 (193)
437 KOG1846 Uncharacterized conser 23.6 1.4E+03 0.029 27.7 22.4 73 116-190 951-1034(1777)
438 PF10193 Telomere_reg-2: Telom 23.5 3.8E+02 0.0082 23.2 7.0 71 500-572 4-77 (114)
439 PF01417 ENTH: ENTH domain; I 23.3 5.1E+02 0.011 22.7 8.7 90 356-445 18-119 (125)
440 PF06371 Drf_GBD: Diaphanous G 22.4 6.7E+02 0.015 23.8 9.6 58 894-951 128-186 (187)
441 PF13925 Katanin_con80: con80 22.3 2.5E+02 0.0054 26.3 6.1 55 124-179 46-105 (164)
442 KOG3613 Dopey and related pred 22.1 1.8E+03 0.04 29.3 14.7 242 245-489 1346-1620(1749)
443 cd04386 RhoGAP_nadrin RhoGAP_n 22.0 3.9E+02 0.0084 26.1 7.8 87 901-996 76-162 (203)
444 cd04398 RhoGAP_fRGD1 RhoGAP_fR 21.7 3.2E+02 0.0069 26.4 7.1 91 901-1000 75-165 (192)
445 cd04403 RhoGAP_ARHGAP27_15_12_ 21.7 2.6E+02 0.0057 26.8 6.4 90 902-1000 73-162 (187)
446 COG5110 RPN1 26S proteasome re 21.2 1.2E+03 0.027 26.3 18.8 35 181-216 447-481 (881)
447 PF08620 RPAP1_C: RPAP1-like, 21.0 1.8E+02 0.0039 22.8 4.0 30 145-174 41-70 (73)
448 PF14868 DUF4487: Domain of un 20.3 1.4E+03 0.03 26.6 27.2 103 431-534 451-554 (559)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-112 Score=936.39 Aligned_cols=961 Identities=46% Similarity=0.772 Sum_probs=882.7
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 19 ~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
||.+.|.+++..++|||+++|++||+.|+....+.+ ....|.+++.++.++++|++|++++|+.+.++ |+.++.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~ 74 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA 74 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence 678899999999999999999999999997665333 56889999988999999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhc
Q 001855 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1004)
+.++.||..++..+.+|+.+.||+.+|.+++.|++.++|. .||+++++|++..+++++..|+.|+.+|..+.+.++..+
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhc-CcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001855 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1004)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~ 257 (1004)
.+|++.+.++|.+++.|+ +..||..|+++++.++...+ +......|..++|.++..+...+++++.+....++++|.+
T Consensus 154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 999999999999999998 55599999999999999985 4556788999999999999999999899999999999999
Q ss_pred HHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001855 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1004)
Q Consensus 258 l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1004)
+++..|+.+.+++.+|+++++++..+++.++.+|..|++++.++++. .|.+.|+.+++...+++.++.+|.+..+|+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 99999999999999999999999999999999999999999999994 888888888999999999999999998889
Q ss_pred cccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001855 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1004)
Q Consensus 338 ~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1004)
+|...++.|+|+ +.++...|.+++++++.++|++.++|.+++.+..++.+++|+.|+|++++|+.+++||.+.+..+++
T Consensus 310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999877666554 5667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccc
Q 001855 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1004)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l 497 (1004)
++++.++++++|++|+||.+||.++|++++.+.+.+.+.+.+.+.|.++..+.+..+++|+.+|+.++-.+.+.+.++.+
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999977777788889999998878899999999999999999998999
Q ss_pred cCchHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHH
Q 001855 498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1004)
Q Consensus 498 ~~~~~~i~~-~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~ 576 (1004)
.||++.+++ .+.-+.+++.+.+++.+..+|++++.+.+..|.||++.+||.|.+.+++..+++.+.+|+..++|++.++
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999999999 5555667788999999999999999999999999999999999999999888899999999999999999
Q ss_pred hhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCC
Q 001855 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS 656 (1004)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~ 656 (1004)
.++|++.|.|+..++++++..++.+..+.+++.+++.+.+|+++|+.+|++|.||++.+||.+++....+|++...++++
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d 628 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEED 628 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchh
Confidence 99999999999999999999987666677889999999999999999999999999999999999999998877664333
Q ss_pred CcccccCCCcccchhhcCCc-eeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHH
Q 001855 657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS 735 (1004)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~ 735 (1004)
+++ ..+++++++..++++ .++|+|+.+++|..||..|++++..++..|.||++++++..++.+..+++.+||++|+.
T Consensus 629 ~e~--~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 629 EEE--EQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred hhh--ccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 222 235666777777777 89999999999999999999999999999999999999977777777889999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHH
Q 001855 736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDE 814 (1004)
Q Consensus 736 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 814 (1004)
+++.++.+...++.. .+.++.+++..+.|.++..+..+++++++..+++++..+++.+|+. +.++++..+...
T Consensus 707 ~~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred HHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 999999998877644 3678999999999999999999999999999999999999999974 888999988888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCC
Q 001855 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (1004)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 894 (1004)
+...+....++.+.|......||+|.++++... |.+..+.+.+.+.+..+.+..++.|.|.|..++|.+.+++.+++
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~ 857 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK 857 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence 888887777766666544344444443333332 77888999999999999999999999999999999999997666
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhc
Q 001855 895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 974 (1004)
Q Consensus 895 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~ 974 (1004)
... |++++++++++++.+++...+|.+.++|.++..+.|.+++||++|+|++|.++.+.++.++|.....++.|..++.
T Consensus 858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 666 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHhhhhc
Q 001855 975 HPNALQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 975 ~~~~~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
.+..+.+.+..++|||++|++||+.++|+
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~ 965 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPN 965 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCc
Confidence 99999889999999999999999999986
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-66 Score=529.90 Aligned_cols=791 Identities=21% Similarity=0.300 Sum_probs=626.6
Q ss_pred cCCC---hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCC
Q 001855 17 LGPD---SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSF 91 (1004)
Q Consensus 17 ~~~d---~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~ 91 (1004)
|.++ .+++.++|++.+|||.++|+.+...|.++.. .|+ |..+|+.+|.. +.+..+|..|+.+||+.++.+
T Consensus 5 w~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~--- 79 (885)
T KOG2023|consen 5 WQPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH--- 79 (885)
T ss_pred CcccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccc-hhceeeEEEecccccchhHHHHhhhhHhcccccc---
Confidence 4454 3567777889999999999999999999999 788 46899999976 678889999999999999998
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 001855 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1004)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~ 171 (1004)
|..++++.+.++|..+++.+.+ .++-+|...+.+|.+|+....- ..||+++|.|.+++.+++.+..++|+.+|..+|
T Consensus 80 -~~~~~~~~~~yiKs~~l~~lgd-~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 80 -YNSIPSEVLDYIKSECLHGLGD-ASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKIC 156 (885)
T ss_pred -ccCCChHHHHHHHHHHHhhccC-chHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 9999999999999999999997 7889999999999999987544 799999999999999999999999999999999
Q ss_pred hhHhhhc-----cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChh
Q 001855 172 QYIGDTL-----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1004)
Q Consensus 172 ~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 246 (1004)
+...+.+ ...++.++|.|+++.+++ ++++|..|+.|+..++... .+.+...+..+++.++...++++++
T Consensus 157 EDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~-----~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 157 EDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ-----TQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred hhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC-----cHHHHHHHHHHHHHHHHHccCCCHH
Confidence 9866533 245788999999999998 9999999999999988753 4556677889999999999999999
Q ss_pred HHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHH
Q 001855 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1004)
Q Consensus 247 ~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1004)
+|...|..|.-+.+..++.+.||++.|+++++... .+.++++...|+++|.++++. |--...+.+|+.+++|.+
T Consensus 231 VRk~vC~alv~Llevr~dkl~phl~~IveyML~~t--qd~dE~VALEACEFwla~aeq----pi~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT--QDVDENVALEACEFWLALAEQ----PICKEVLQPYLDKLIPVL 304 (885)
T ss_pred HHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc--cCcchhHHHHHHHHHHHHhcC----cCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999977 455778999999999999994 422234789999999999
Q ss_pred HHhhcCCCCCcc---------------------cc------------CCC-CCC--ccc---cCCcccchHHHHHHHHHH
Q 001855 327 MSMLLDIEDDPL---------------------WH------------SAE-TED--EDA---GESSNYSVGQECLDRLAI 367 (1004)
Q Consensus 327 ~~~l~~~~~~~~---------------------~~------------~~~-~~~--~d~---~~~~~~~~a~~~l~~l~~ 367 (1004)
+..|.+.++|.. ++ .++ ++| +|+ .+|..++++..+|+.|+.
T Consensus 305 l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan 384 (885)
T KOG2023|consen 305 LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN 384 (885)
T ss_pred HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH
Confidence 999887543210 00 000 111 111 125566788899999999
Q ss_pred hcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001855 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1004)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1004)
.+| +++++.++|.+.+.+.+++|.+|++++.++|+++++|.+.+.+|++.++|+++.+|.|+.|.||..+||+|++++.
T Consensus 385 vf~-~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 385 VFG-DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred hhH-HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001855 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1004)
Q Consensus 448 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l 527 (1004)
+.-..-..+|+..++..+++.+-| ++++|+++||.++..+-+..+++ +.||+..|+..+...++....+-..-.+.++
T Consensus 464 wv~~~~~~~~f~pvL~~ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAI 541 (885)
T KOG2023|consen 464 WVVQDSRDEYFKPVLEGLLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAI 541 (885)
T ss_pred hHhcCChHhhhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHH
Confidence 986554468999999999999999 99999999999999999999855 7899999999999999877665555678999
Q ss_pred HHHHHHhHhhhH--hhHhhhhHHHHHHHhhcCc--ccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCC
Q 001855 528 ASVADSSQEHFQ--KYYDAVMPFLKAILVNATD--KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM 603 (1004)
Q Consensus 528 ~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~--~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 603 (1004)
|+++..+|.++. .|.+.++|+|++.|+.-.+ ++.+++ ++|++.++.++| ..|.||++++++-...+..
T Consensus 542 gtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~--- 613 (885)
T KOG2023|consen 542 GTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALG-VGFLPYAQPVYQRCFRILQ--- 613 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHh-ccccccCHHHHHHHHHHHH---
Confidence 999999998775 4999999999999876433 334444 899999999998 7899998877664443211
Q ss_pred CCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeech
Q 001855 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTS 683 (1004)
Q Consensus 604 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1004)
.++..+ .+ ...++.+. -. |+.+-
T Consensus 614 -----------~t~q~~-------------------~~-~~~~~~~~--------------~p--------dkdfi---- 636 (885)
T KOG2023|consen 614 -----------KTLQLL-------------------AK-VQQDPTVE--------------AP--------DKDFI---- 636 (885)
T ss_pred -----------HHHHHH-------------------Hh-ccCCcccc--------------CC--------CcceE----
Confidence 011111 11 11111111 01 11111
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccH--HHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHH
Q 001855 684 VLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYV 761 (1004)
Q Consensus 684 ~~~~~~~a~~~l~~l~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 761 (1004)
+.|+++++.++..+|..+.|-+ ..++..+..++.+. -++||++|+..+|++.+.+ .+.+
T Consensus 637 -----I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~-~peVRQS~FALLGDltk~c-------------~~~v 697 (885)
T KOG2023|consen 637 -----IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDE-VPEVRQSAFALLGDLTKAC-------------FEHV 697 (885)
T ss_pred -----EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHH-------------HHhc
Confidence 3477889999999988877765 44677788888765 7899999999999999987 3445
Q ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChH
Q 001855 762 KQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAE 841 (1004)
Q Consensus 762 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~ 841 (1004)
.+.+..++|-+-..+..+ ...++..++.+++++.-..|..+. ..+..++..+..+++...
T Consensus 698 ~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiGeia~k~g~~~~-~~v~~vl~~L~~iin~~~------------------ 757 (885)
T KOG2023|consen 698 IPNLADFLPILGANLNPE-NISVCNNAIWAIGEIALKMGLKMK-QYVSPVLEDLITIINRQN------------------ 757 (885)
T ss_pred cchHHHHHHHHhhcCChh-hchHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHHhcccC------------------
Confidence 566677777665444332 456777889999998888876432 445566666555554311
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 001855 842 ESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY 921 (1004)
Q Consensus 842 ~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 921 (1004)
....+.++.+-.+|.|...+|+.+.|+++.++..-...++.=.+.++|.+|+..+..++...+..+...+
T Consensus 758 ----------~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~ 827 (885)
T KOG2023|consen 758 ----------TPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSF 827 (885)
T ss_pred ----------chHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhh
Confidence 2345777889999999999999999999987755444444445567899999999999888776554444
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHH
Q 001855 922 ETYLPFLLEACNDENQDVRQAAVY 945 (1004)
Q Consensus 922 ~~l~~~~~~~l~~~~~~vr~~a~~ 945 (1004)
..+...+.+ ..++..++|+.-..
T Consensus 828 ~f~c~aiAs-w~np~~~l~~~f~k 850 (885)
T KOG2023|consen 828 IFICDAIAS-WSNPEDDLRDEFYK 850 (885)
T ss_pred HHHHHHHhc-ccChHHHHHHHHHH
Confidence 433333333 22444445544433
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-60 Score=495.71 Aligned_cols=784 Identities=20% Similarity=0.306 Sum_probs=617.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------CCccc
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~-------~~~w~ 94 (1004)
++.++|+.+.|||.++|++|+++|.+++.+|...|+..|.++|.+ +.++..|..|++.|||.+..++ ...|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 356788889999999999999999999998888899999999988 6789999999999999998875 45799
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCh-hHHHHHHHHHHHhhhh
Q 001855 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQY 173 (1004)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~-~~r~~al~~l~~l~~~ 173 (1004)
.++.|.++++|..++..|++ +.+.....++++++.||..++|.+.||++++.+.....++.+ .+|++++.++|.+|+.
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 789999999999999999999999999999999998877655 5999999999999999
Q ss_pred Hhh-hccccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHH
Q 001855 174 IGD-TLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1004)
Q Consensus 174 ~~~-~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a 251 (1004)
+.+ .+....+.++..+.+++... ++..||.+|++||....++....+..+.-+ ..+++...+..+++|.+++..|
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er---n~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMER---NYIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhh---ceeeeeeeecccCCcHHHHHHH
Confidence 754 45556778887777776554 688999999999999998764333332222 3788999999999999999999
Q ss_pred HHHHHHHHccchHHHHHhHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhh-----hccchhhhcc--------hh
Q 001855 252 LELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR-----ERAPGMMRKL--------PQ 317 (1004)
Q Consensus 252 ~~~L~~l~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~-----~~~~~~~~~~--------~~ 317 (1004)
+.||..++..|++++.+|+.+ ++...+..+ ++.++++..+++++|+++|+.+ ++....-+.. ..
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~am--ks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAM--KSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999999986 888887766 4568999999999999999863 1111111111 12
Q ss_pred hHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHH
Q 001855 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1004)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 397 (1004)
.++.++|.+++.|.+.+++ +|+|+|++.++|..||..++...+ +.++++++|++.+.+++++|+.|++|
T Consensus 316 a~~~v~P~Ll~~L~kqde~----------~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDED----------DDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred HHhHhhHHHHHHHHhCCCC----------cccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHH
Confidence 4557899999888775432 334579999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCCh
Q 001855 398 LIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNP 475 (1004)
Q Consensus 398 l~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~ 475 (1004)
.+++|++.++... ...+...+.+|.++..+.|++-.||+.+.|+++++++.++... ...+.+.+++.+++.|+| .|
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--eP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--Cc
Confidence 9999999998544 5677888999999999999999999999999999999887543 245889999999999999 79
Q ss_pred hHHHHHHHHHHHHhhcCC--------cccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHHhHhhhHhhHhh
Q 001855 476 RVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDA 544 (1004)
Q Consensus 476 ~v~~~a~~~l~~l~~~~~--------~~~l~~~~~~i~~~l~~~l~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 544 (1004)
+|...+||++..+.+.+. .+...|+++.|+..|++..+.. ....|..++++++.++....+...+....
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999996542 1234579999999999987764 46799999999999999988877665555
Q ss_pred hhHHHHH----HHh-----hcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001855 545 VMPFLKA----ILV-----NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1004)
Q Consensus 545 i~~~l~~----~l~-----~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1004)
+...+.. .++ .....+..++++-...+++.+.+.+|+ .+.++.+.+|.+++++.++ ..+..+.+.++-
T Consensus 543 ~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s--~~s~~v~e~a~l 619 (859)
T KOG1241|consen 543 LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES--KRSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC--CccccchHHHHH
Confidence 5554444 332 111123456777788899999999995 7999999999999997764 223346677888
Q ss_pred HHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHH
Q 001855 616 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (1004)
Q Consensus 616 ~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l 695 (1004)
+.+.++..+|..|..|+|.+.|.|...++... +. .....|..++
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~-----------------e~-------------------qVc~~aVglV 663 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ-----------------EY-------------------QVCAAAVGLV 663 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch-----------------HH-------------------HHHHHHHHHH
Confidence 99999999999999999999999999984321 11 1124577889
Q ss_pred HHHHHHhcccccccHHHHHHHhccccCcc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q 001855 696 CCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 774 (1004)
Q Consensus 696 ~~l~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 774 (1004)
|.+++.++.+|.||...++..+++.++.+ .+.+++-.-++++|++....+ ..+.++++.++|.+.+
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg-------------~~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIG-------------ADFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753 456788888899999987662 3366778888887765
Q ss_pred HH--ccCC--c------HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhh
Q 001855 775 AL--HKEP--D------TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (1004)
Q Consensus 775 ~~--~~~~--~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~ 844 (1004)
.- ..++ + .++|..++++...+++.++..-....+.+.+..+.+.+.+.. .+++
T Consensus 731 as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~----------~e~~------- 793 (859)
T KOG1241|consen 731 ASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIA----------AEPD------- 793 (859)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHh----------cCcc-------
Confidence 54 2222 1 355666777777777777643233444455666666665542 1111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH--HHHhHhhhhcCCCCHHHHHH
Q 001855 845 LIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRI 901 (1004)
Q Consensus 845 ~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--ll~~l~~~l~~~~~~~~r~~ 901 (1004)
.++.+...+..+||-|+..+|....+++.. ++-.++..-+++++...|..
T Consensus 794 -------~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~ 845 (859)
T KOG1241|consen 794 -------VSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDL 845 (859)
T ss_pred -------cchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHH
Confidence 234566789999999999999877665443 33333332223444444443
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=7e-47 Score=382.35 Aligned_cols=667 Identities=16% Similarity=0.208 Sum_probs=526.7
Q ss_pred CChHHHHHHHHH-hcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------
Q 001855 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD------- 89 (1004)
Q Consensus 19 ~d~~~l~~ll~~-~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~------- 89 (1004)
|.-.++..+.++ .+|||++.|..||++|.+++..+...|+..+.+.+.+ +.++..|..|++.||+.+..++
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 344567777776 6899999999999999999998888999999999988 7899999999999999998874
Q ss_pred CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCh-hHHHHHHHHHH
Q 001855 90 SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFA 168 (1004)
Q Consensus 90 ~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~-~~r~~al~~l~ 168 (1004)
...|-.+++|.++++|...++.|++ +.+..-+.++++++.|++.++|.+.||+++..+.....++.+ ..+..++.+++
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 4679999999999999999999998 899999999999999999999999999999999998877654 67888999999
Q ss_pred HhhhhHhh-hccccHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChh
Q 001855 169 QLSQYIGD-TLTPHLKH-LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1004)
Q Consensus 169 ~l~~~~~~-~~~~~~~~-l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 246 (1004)
..|+...+ .+....+. ++.++...++..++..||.+|++||..-..++.+.+..+ .-...+++...+..+.++.+
T Consensus 160 y~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E---~erNy~mqvvceatq~~d~e 236 (858)
T COG5215 160 YHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE---EERNYFMQVVCEATQGNDEE 236 (858)
T ss_pred HHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch---hhhchhheeeehhccCCcHH
Confidence 99998644 44443444 445666667776789999999999998666654332222 22347899999999999999
Q ss_pred HHHHHHHHHHHHHccchHHHHHhHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhh-------hccchhhhcc---
Q 001855 247 TAQEALELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR-------ERAPGMMRKL--- 315 (1004)
Q Consensus 247 ~~~~a~~~L~~l~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~-------~~~~~~~~~~--- 315 (1004)
+...++.||..++..+++++.+|+.. +...+...+ ++.++++..++.++|+++|+.+ ++.|..-.+.
T Consensus 237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m--ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM--KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 99999999999999999999999875 444444444 5568999999999999999863 1122100011
Q ss_pred -hhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHH
Q 001855 316 -PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1004)
Q Consensus 316 -~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1004)
...+..++|.++..+....+|+ ++|+|++..+|..||..++...| +.+...++.++.+.+.+++|..|
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed~----------~~DdWn~smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni~~~~w~nr 383 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGEDY----------YGDDWNPSMAASSCLQLFAQLKG-DKIMRPVLGFVEQNIRSESWANR 383 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc----------cccccchhhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhccCchhhhH
Confidence 1235668999999988754332 34488889999999999999998 67788899999999999999999
Q ss_pred HHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhcCCC
Q 001855 395 HAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDF 472 (1004)
Q Consensus 395 ~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~ 472 (1004)
++|.+++|.+.++..+ ...+++++.+|.+...+.|+.-.|+..+.||+++++.+.+..+. ..++......++..+.|
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D- 462 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD- 462 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-
Confidence 9999999999998665 45677899999999999999999999999999999998765441 23677778888888888
Q ss_pred CChhHHHHHHHHHHHHhhcCC------cccccCchHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHHhHhhhHhhHhh
Q 001855 473 QNPRVQAHAASAVLNFSENCT------PEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEHFQKYYDA 544 (1004)
Q Consensus 473 ~~~~v~~~a~~~l~~l~~~~~------~~~l~~~~~~i~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 544 (1004)
+|.+...+++....+++++. ++.+.++++.|+..|++..+. .+...|..+++++|.++..+++...+.+-.
T Consensus 463 -~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~ 541 (858)
T COG5215 463 -CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG 541 (858)
T ss_pred -cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 78888999999999988764 355778889999998876543 346789999999999998887765554443
Q ss_pred hhHHHHHHHhh-----------cCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001855 545 VMPFLKAILVN-----------ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1004)
Q Consensus 545 i~~~l~~~l~~-----------~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 613 (1004)
+..+..+.+.. .......++.+..+..+..+.+..++ .+.+-.++++++++++..+. ......+-+
T Consensus 542 ~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-~ie~v~D~lm~Lf~r~les~--~~t~~~~dV 618 (858)
T COG5215 542 FYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR-DIEDVEDQLMELFIRILEST--KPTTAFGDV 618 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHhcc--CCchhhhHH
Confidence 33333333221 11112345566666777777777763 46677788999999965532 223355677
Q ss_pred HHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHH
Q 001855 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1004)
Q Consensus 614 ~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~ 693 (1004)
+.+++.++.++++.|..|++.++|.+.+.++..+. -....|..
T Consensus 619 ~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~-------------------------------------~v~~~avg 661 (858)
T COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRALNCTDR-------------------------------------FVLNSAVG 661 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhH-------------------------------------HHHHHHHH
Confidence 88899999999999999999999999999843110 11245778
Q ss_pred HHHHHHHHhcccccccHHHHHHHhccccCcc-CCHHHHHHHHHhHHHHHHHH
Q 001855 694 MLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSA 744 (1004)
Q Consensus 694 ~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~vr~~a~~~l~~l~~~~ 744 (1004)
++|.+++.++.+|.+|...++..+.++++.+ .+.+++-+..+.++++....
T Consensus 662 lvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlai 713 (858)
T COG5215 662 LVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAI 713 (858)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHH
Confidence 8999999999999999999999999988753 35677888888899988765
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-37 Score=338.55 Aligned_cols=806 Identities=18% Similarity=0.235 Sum_probs=578.1
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC---CCcchH
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPEL 144 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l 144 (1004)
+++.++|+-|-..|.+..... + +...|...+....++.+|..++..+.++....|+. ..-..+
T Consensus 15 spDn~vr~~Ae~~l~~~~~~~--------~------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 15 SPDNEVRRQAEEALETLAKTE--------P------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred CCCchHHHHHHHHHHHhhccc--------c------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 677888999999998874432 1 33456666776689999999999999998865542 122345
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHh
Q 001855 145 LPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1004)
Q Consensus 145 l~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 223 (1004)
...|+..+.+. .+.+|+.-.+++..+.+..-+. .++++++.+.++.+++ ++..|..|+..|..+...+. +
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~-~~~~rE~al~il~s~~~~~~-----~ 151 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSP-NPSLRESALLILSSLPETFG-----N 151 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCC-CcchhHHHHHHHHhhhhhhc-----c
Confidence 55566666544 6789999999999888875444 6999999999999998 99999999999999998863 3
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch--HHHHHhHHHHHHHHHHhhcC--CCcchHHHHHHHHHHH
Q 001855 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIAEA--ESLEEGTRHLAIEFVI 299 (1004)
Q Consensus 224 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~i~~~l~~~~~~--~~~~~~vr~~a~~~l~ 299 (1004)
.+..+++.+...+.+++++++..+|..+++.+..++.... ....+++..+++.++..+.. .+.+++....+++++.
T Consensus 152 ~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 152 TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 3456677888888889988777799999999999887663 44445555555555544422 2234555677888888
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCC--------
Q 001855 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-------- 371 (1004)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~-------- 371 (1004)
.+++. .|. -+.+++..++...+......+- +.+.|..|.+++-.+++..+.
T Consensus 232 El~e~---~pk---~l~~~l~~ii~~~l~Ia~n~~l---------------~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~ 290 (1075)
T KOG2171|consen 232 ELLES---EPK---LLRPHLSQIIQFSLEIAKNKEL---------------ENSIRHLALEFLVSLSEYAPAMCKKLALL 290 (1075)
T ss_pred HHHhh---chH---HHHHHHHHHHHHHHHHhhcccc---------------cHHHHHHHHHHHHHHHHhhHHHhhhchhh
Confidence 88884 443 3557888888887766544321 234566788888777765321
Q ss_pred -CcchHHHHHHHHHhhcCCChh------------HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHH
Q 001855 372 -NTIVPVASEQLPAYLAAPEWQ------------KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1004)
Q Consensus 372 -~~~~~~l~~~l~~~l~~~~~~------------~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 438 (1004)
..+++.++..+.+...|++|. ....|..++..++-+++.. ..++.+++.+-..+.+++|.-|.++
T Consensus 291 ~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 291 GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhcCCCHHHHHHH
Confidence 233333333333333343442 3456778888888777641 3467788888899999999999999
Q ss_pred HHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCC-h
Q 001855 439 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-Q 517 (1004)
Q Consensus 439 ~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~-~ 517 (1004)
+.+|+.+++.+++.+ .+.++++++.++..++| ++|+||.+||.+++.+...+.++.-..|-..+.+.|...+++.. +
T Consensus 369 L~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVM-IGNLPKILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch
Confidence 999999999999888 78999999999999999 99999999999999999999877555555666668888887764 5
Q ss_pred hHHHHHHHHHHHHHHH-hHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHH
Q 001855 518 MVQEGALTALASVADS-SQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1004)
Q Consensus 518 ~vr~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 596 (1004)
+|...|..++-++... .++.+.||++.++...+..+.. ++...+++.++.+|+.++.+.+ +.|.||.+.+|+.+.
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~---~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~ 522 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ---SSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLK 522 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHH
Confidence 7888888877776655 4567889999999966666543 3556789999999999999998 789999999999999
Q ss_pred H-HhcCCCCCCCchhhHHHHHHHHHHhHhc-cCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcC
Q 001855 597 S-LQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1004)
Q Consensus 597 ~-l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1004)
. +++..-++...+|...+.|++.++.+.| +.|.|+-..+++.+...-..+. + +++..
T Consensus 523 ~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~-----~---------~dd~~------- 581 (1075)
T KOG2171|consen 523 NFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ-----D---------DDDPL------- 581 (1075)
T ss_pred HHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch-----h---------hcccc-------
Confidence 9 5553323445688889999999999999 6699999999988777642110 0 01111
Q ss_pred CceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccC-------------------------C---
Q 001855 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYF-------------------------H--- 726 (1004)
Q Consensus 675 ~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~-------------------------~--- 726 (1004)
+......++.+++-+|.+|.||++.+++.+++-.+-.. +
T Consensus 582 -------------~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~ 648 (1075)
T KOG2171|consen 582 -------------RSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKEN 648 (1075)
T ss_pred -------------HHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCcee
Confidence 23445679999999999999999999999875432100 0
Q ss_pred HHH-------HHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHh
Q 001855 727 EEV-------RKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1004)
Q Consensus 727 ~~v-------r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 799 (1004)
-.| +..|+.+|+.+....+ ....+|+.+.+...+|.+.-.+.+ .||.++.+++..++...
T Consensus 649 ~~I~Tsvl~eK~~A~~~Lv~~a~~lk---------~~F~pYve~v~~l~v~~l~f~fhd----gVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 649 IGIRTSVLDEKETACEALGEYAKELK---------EAFAPYVEQVVELMVPLLKFYFHD----GVRKAAAESMPQLLTCA 715 (1075)
T ss_pred eeeeehhHHHHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHH
Confidence 012 3334444544444332 225677777777566655544432 57777777776666542
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccc--
Q 001855 800 GP--LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF-- 875 (1004)
Q Consensus 800 ~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~-- 875 (1004)
-. .-.|..+..+.+.+.+.+...+. .|.+..+...+.+.++..++.+|...
T Consensus 716 ~~A~~~~p~~l~~l~~~~~~~l~~~l~-------------------------~E~e~~vl~~vl~~f~~~i~~~G~~~L~ 770 (1075)
T KOG2171|consen 716 LKACQGGPEYLKQLWEAIRPALIKALE-------------------------EEPETEVLSEILESFAECIEVMGDNCLN 770 (1075)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHhh-------------------------cCCcHHHHHHHHHHHHHHHHhcCcccCC
Confidence 11 12345555566655555544331 12334566677888888888888542
Q ss_pred hhhHHHHHHhHhhhhc---------------CCCCHHH-----------HHHHHHHHHHHHHHhhhhHHhhhHhHHHHHH
Q 001855 876 LPFFDELSSYLTPMWG---------------KDKTAEE-----------RRIAICIFDDVAEQCREAALKYYETYLPFLL 929 (1004)
Q Consensus 876 ~~~~~~ll~~l~~~l~---------------~~~~~~~-----------r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~ 929 (1004)
.+++..+...+...+. .+....+ -..+..+++.+++..+..+.|++..+.|.+.
T Consensus 771 ~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv 850 (1075)
T KOG2171|consen 771 EDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIV 850 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 3444443332222111 0001111 1124567777788888899999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhhhhc
Q 001855 930 EACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 930 ~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
..+....+.-|+.|..+++.++.++++...+|.+.+++.++..+.++ ++++|+||+.-+|-++.|-++
T Consensus 851 ~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~------~pEVRqaAsYGiGvlaq~~g~ 918 (1075)
T KOG2171|consen 851 KLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS------DPEVRQAAAYGMGVLAQFGGE 918 (1075)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHcCc
Confidence 99988776669999999999999999999999999999999999876 789999999999999988764
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=315.93 Aligned_cols=894 Identities=15% Similarity=0.200 Sum_probs=595.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-Hhhhc----Cc---hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001855 26 TLISHLMSTSNEQRSEAELLFN-LCKQQ----DP---DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1004)
Q Consensus 26 ~ll~~~~s~~~~~r~~A~~~L~-~~~~~----~p---~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~ 97 (1004)
.+++.+.|+|.+.|-.|+..|. ++++. +- ...+..+++.|. +.|.+|+.+|..++.-+.+ +++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvs--------Kvk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVS--------KVK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHh--------hch
Confidence 8899999999999999999875 45442 11 124566777664 5689999999999998874 356
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-------CCcchHHHHHHHhhcCC--ChhHHHHHHHHHH
Q 001855 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSSD--SVKLQESAFLIFA 168 (1004)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-------~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~ 168 (1004)
++..+.+.+.|...+.+ .....|...+..+.+.....-|. ..++.+.|.+.+.+... ....+..++.+++
T Consensus 80 e~~le~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred HHHHHHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 78888999999988776 46667777776666666554442 23456666776666543 3457788888888
Q ss_pred HhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHH
Q 001855 169 QLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1004)
Q Consensus 169 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 248 (1004)
.+...++.-+.++...+...+..-+..+ ...||+.|+.++++++... ....+..++..+++-+. +.......
T Consensus 159 d~lsr~g~ll~~fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~----~~~ly~~li~~Ll~~L~---~~~q~~~~ 230 (1233)
T KOG1824|consen 159 DVLSRFGTLLPNFHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSC----NRDLYVELIEHLLKGLS---NRTQMSAT 230 (1233)
T ss_pred HHHHhhcccCcchHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccC---CCCchHHH
Confidence 8888888766665666666666666776 8899999999999999886 34445554444444333 23456667
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001855 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1004)
Q Consensus 249 ~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1004)
...+++|..++...+..+..|++.+++.+.+..+. ...+++.|..+++.+..+.. +.| +...++++.++..++
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp---~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCP---KEILPHVPEIINLCL 304 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hCh---hhhcccchHHHHHHH
Confidence 78899999999999999999999999988877632 23578899999999999988 566 356678888999998
Q ss_pred HhhcCCC-------CCcc--ccC--------CCCCCccccCCcccchHHHHHHHHHHhcCCCcchHH----HHHHHHHhh
Q 001855 328 SMLLDIE-------DDPL--WHS--------AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV----ASEQLPAYL 386 (1004)
Q Consensus 328 ~~l~~~~-------~~~~--~~~--------~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~----l~~~l~~~l 386 (1004)
.++.+.. +|++ ... ++++||||..|..+++|.+++..+...-. +.++. +-|.+...+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~--E~L~~~~q~l~p~lI~Rf 382 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL--EMLPDFYQTLGPALISRF 382 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH--HHHHHHHHHhCHHHHHHH
Confidence 8887531 1110 000 11113334445566788888887654321 33333 333333444
Q ss_pred cCCChhHHHHHHHHHHHHHhhc------------------H---HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001855 387 AAPEWQKHHAALIALAQIAEGC------------------A---KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1004)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~------------------~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1004)
++.+..+|...+.++-.+.... + ..+....+.++..+-+.+++++...|..++..|..+
T Consensus 383 kEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~el 462 (1233)
T KOG1824|consen 383 KEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTEL 462 (1233)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 4555555555555444443221 1 123345566777777788888888899999999999
Q ss_pred hhhhchhHHhhhhhhhHHHHHhhcCCCC-ChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHH
Q 001855 446 STDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGAL 524 (1004)
Q Consensus 446 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~ 524 (1004)
+..+++.. .++.+.++|.+...+.|.+ ....+..+..++...+..++++.+.||.+.+.+.+.....++.+++-..|+
T Consensus 463 i~~lp~~l-~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL 541 (1233)
T KOG1824|consen 463 INVLPGAL-AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEAL 541 (1233)
T ss_pred HHhCcchh-hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHH
Confidence 99988877 8999999999999999832 234677888899999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHhHh-------hhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001855 525 TALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1004)
Q Consensus 525 ~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1004)
.....+++...+ +..||+..++....+.+.. .+.+.++|.+|+.|+|.+...+| +.....++.+++.+..
T Consensus 542 ~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a--~d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 542 LVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA--TDSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHH
Confidence 999988887542 3458999999988888865 34578899999999999999999 7788888999998887
Q ss_pred -HhcCCCCCCCchhhHHHHHHHHHHhHh-ccCcccchhhhhHHHHHHcccCCCcc----------ccCCCCCcccccCCC
Q 001855 598 -LQGSQMETDDPTTSYMLQAWARLCKCL-GQDFLPYMSVVMPPLLQSAQLKPDVT----------ITSADSDNEIEDSDD 665 (1004)
Q Consensus 598 -l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~i~~~ll~~~~~~~~~~----------~~~~~~~~~~~~~~~ 665 (1004)
+.+ +..|-.+.+++..++.+. .-+..|.+..+++.+...+....... +.....+. -..
T Consensus 619 Rl~n------EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~----~~~ 688 (1233)
T KOG1824|consen 619 RLGN------EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDS----IPA 688 (1233)
T ss_pred HHhc------hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccH
Confidence 443 345667777777776552 23456777777777776663211000 00000000 000
Q ss_pred cccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCc----------------------
Q 001855 666 DSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF---------------------- 723 (1004)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~---------------------- 723 (1004)
+..+.+ +.+-.--+..+.+..-..|+.++..++...+..+....+.+++.++.++..
T Consensus 689 ~~~e~v-L~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~ 767 (1233)
T KOG1824|consen 689 ELLEAV-LVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITK 767 (1233)
T ss_pred HHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcC
Confidence 001000 000000111111222234555555555443333222222222222211110
Q ss_pred -------------------cCCHHHHHHHHHhHHHHHHHHHHHH------------------------------HcCCCC
Q 001855 724 -------------------YFHEEVRKAAVSAMPELLRSAKLAI------------------------------EKGLAP 754 (1004)
Q Consensus 724 -------------------~~~~~vr~~a~~~l~~l~~~~~~~~------------------------------~~~~~~ 754 (1004)
.....+.+.|...+..++.....+. ..|..|
T Consensus 768 ~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElg 847 (1233)
T KOG1824|consen 768 EPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELG 847 (1233)
T ss_pred CCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhc
Confidence 0011122222222222221111000 001000
Q ss_pred ---C----------------CCHHHHHH------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCC
Q 001855 755 ---G----------------RNESYVKQ------------LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLL 803 (1004)
Q Consensus 755 ---~----------------~~~~~~~~------------~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 803 (1004)
+ ...+.++. -++.++|.+++.+..++..+.. .+.++.+++...+.
T Consensus 848 r~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyL--LLhSlkevi~~~sv-- 923 (1233)
T KOG1824|consen 848 RRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYL--LLHSLKEVIVSASV-- 923 (1233)
T ss_pred cCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHH--HHHHHHHHHHHhcc--
Confidence 0 00011110 1344667777777666655554 77888888876544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHH
Q 001855 804 DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELS 883 (1004)
Q Consensus 804 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll 883 (1004)
+.+.+.++.+|.+|.+.+++ .++..|..+++|+|.|+-..|+.+.|
T Consensus 924 --d~~~~~v~~IW~lL~k~cE~--------------------------~eegtR~vvAECLGkL~l~epesLlp------ 969 (1233)
T KOG1824|consen 924 --DGLKPYVEKIWALLFKHCEC--------------------------AEEGTRNVVAECLGKLVLIEPESLLP------ 969 (1233)
T ss_pred --chhhhhHHHHHHHHHHhccc--------------------------chhhhHHHHHHHhhhHHhCChHHHHH------
Confidence 35566778888888776532 23356888999999999988876554
Q ss_pred HhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHH
Q 001855 884 SYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVG 963 (1004)
Q Consensus 884 ~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~ 963 (1004)
.+...+ .++.+..|..++.++.+.+..-++.+.+++.+.+..|+..++|++..||+.|..++...+++.|..++..+|
T Consensus 970 -kL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllp 1047 (1233)
T KOG1824|consen 970 -KLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLP 1047 (1233)
T ss_pred -HHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHH
Confidence 444444 678888999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC-----------CC-CchhhhhHHHHHHHHHHHHhh
Q 001855 964 EALSRLNVVIRHPN-----------AL-QPENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 964 ~~l~~L~~~l~~~~-----------~~-~~~~~~~~~na~~a~~~l~~~ 1000 (1004)
++||.|+.-.+..+ ++ .++.-..|.-|-.|+..+.-.
T Consensus 1048 eLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1048 ELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred HHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHh
Confidence 99999998755321 11 234566777777887776543
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-33 Score=301.78 Aligned_cols=687 Identities=16% Similarity=0.206 Sum_probs=468.5
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC--
Q 001855 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1004)
Q Consensus 19 ~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~-- 95 (1004)
||.+.+.+++.++..+|++.|+.||++|+++.+ .|. |+..+++++.+ +-+-.+|+.|+++|||.|.+. |+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~----W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS----WSSHE 74 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc----CCccC
Confidence 789999999999999999999999999999999 687 56999999977 557788999999999999998 653
Q ss_pred -------CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHH
Q 001855 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (1004)
Q Consensus 96 -------l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~ 168 (1004)
+.++.+..||+.++..+.+ .+..+|.....++..|.+.++| ++||.+++.+...+++++.....+|+.++.
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~ 152 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLY 152 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 5789999999999999998 6889999999999999999999 899999999999999999999999999999
Q ss_pred HhhhhHh-----------hhccccHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHh-hcC-cchHhHHHhhHHHHH
Q 001855 169 QLSQYIG-----------DTLTPHLKHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQC-LTS-SADRDRFQDLLPLMM 233 (1004)
Q Consensus 169 ~l~~~~~-----------~~~~~~~~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~~~~~-~~~-~~~~~~~~~~~~~~l 233 (1004)
.+++... .-+...++.+.+.+.+.+..+ .+.++.+..++.+..++.+ ++. -...+.|..|+..++
T Consensus 153 qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l 232 (1010)
T KOG1991|consen 153 QLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFL 232 (1010)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHH
Confidence 9997532 113335666666777777766 2355666777777666654 111 112334444444444
Q ss_pred HHHHHHHh----cCCh---------hHHHHHHHHHHHHHccchH--------------HHHHhHHHHHHHHHHhhcC---
Q 001855 234 RTLTESLN----NGNE---------ATAQEALELLIELAGTEPR--------------FLRRQLVDVVGSMLQIAEA--- 283 (1004)
Q Consensus 234 ~~l~~~l~----~~~~---------~~~~~a~~~L~~l~~~~~~--------------~~~~~~~~i~~~l~~~~~~--- 283 (1004)
..+...+. ..++ +.++.|+-.+.++.+++++ ++..+++.|.+..++.+..
T Consensus 233 ~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~ 312 (1010)
T KOG1991|consen 233 SILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ 312 (1010)
T ss_pred HHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44332211 1133 3567899999988876631 2233455666666665522
Q ss_pred -CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcCCCCC-ccccCCCCC------CccccCCcc
Q 001855 284 -ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIEDD-PLWHSAETE------DEDAGESSN 354 (1004)
Q Consensus 284 -~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~-~~~~~~~~~------~~d~~~~~~ 354 (1004)
....+.+-..++.++...+.. ..+++.+.|++..++.. +++.|+..+++ ..|+.++.| |--++..++
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs~----~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp 388 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVSH----ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSP 388 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhccH----HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCC
Confidence 124566667777777776663 34566777888887665 56777766544 357655433 111235567
Q ss_pred cchHHHHHHHHHHhcCCCcchHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHhhcHH--HHHHhHHH-HHHHH
Q 001855 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--------APEWQKHHAALIALAQIAEGCAK--VMVKNLEQ-VLSMV 423 (1004)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~-i~~~l 423 (1004)
..+|..++..++..-| +..++.+++++...+. ..+.+.+++|+.++|.+++...+ .....++. +++++
T Consensus 389 ~~Aa~~~l~~~~~KR~-ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRG-KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred cHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 7788889999888887 6888999998888776 24789999999999999976543 33445555 44788
Q ss_pred HhhCCCCChhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHHHhhcC-CCCChhHHHHHHHHHHHHhhcCCc--ccccC
Q 001855 424 LNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALAGAMD-DFQNPRVQAHAASAVLNFSENCTP--EILTP 499 (1004)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~--~~l~~ 499 (1004)
++.++++.-..|..|||.++.++ ..+++ ...+..++....++|. | +.-.||..|+.||..++.+... +.+.+
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d-~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLND-NELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccC-CcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 89999999999999999999999 45554 3467888999999988 5 7788999999999999988752 34889
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH----hhcC--cccchhhh---HHHHH
Q 001855 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL----VNAT--DKSNRMLR---AKSME 570 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l----~~~~--~~~~~~l~---~~a~~ 570 (1004)
+++.+++.++++.+..+.+ ....++..++..+++++.||...+...|...+ ++.. ++.+..-. ...+.
T Consensus 544 hvp~~mq~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~ 620 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILR 620 (1010)
T ss_pred hhhHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Confidence 9999999999998876653 34567778888999999999888877776554 3211 11111111 12334
Q ss_pred HHHHHHhhhC--hhhhh---hhHHHHHHHHHH------------HhcCCCC-CCCchhhHHHHHHHHHHhHhccCcccch
Q 001855 571 CISLVGMAVG--KDKFR---DDAKQVMEVLMS------------LQGSQME-TDDPTTSYMLQAWARLCKCLGQDFLPYM 632 (1004)
Q Consensus 571 ~l~~l~~~~~--~~~~~---~~~~~i~~~l~~------------l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l 632 (1004)
++.++...+. ++.+. |.+-.++..++. +.. +.. -...+...+...|..+..++.+.-..|+
T Consensus 621 Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~-~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf 699 (1010)
T KOG1991|consen 621 TISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVS-SLTFLSKEISPIMWGLLELILEVFQDDGIDYF 699 (1010)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-hhhhhhcccCHHHHHHHHHHHHHHhhhhHHHH
Confidence 4444444443 12222 222222222222 100 000 0112344566666777777777777888
Q ss_pred hhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHH
Q 001855 633 SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQ 712 (1004)
Q Consensus 633 ~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~ 712 (1004)
+.+++.+-+.+.+..+....+.+ .-.--++.. .+...-.+....+.+.|++++..++-++++.+..|++.
T Consensus 700 ~d~~~~l~N~vt~g~~~~~s~~~-------y~~il~~i~---~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl 769 (1010)
T KOG1991|consen 700 TDMMPALHNYVTYGTPSLLSNPD-------YLQILLEII---KKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL 769 (1010)
T ss_pred HHHHHHHhhheeeCchhhhccch-------HHHHHHHHH---HHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH
Confidence 88888877777553321111000 000000000 00000011223445679999999999999888888888
Q ss_pred HHHHhccccCc-cCCHHHHHHHHHh
Q 001855 713 VAPTLVPLLKF-YFHEEVRKAAVSA 736 (1004)
Q Consensus 713 ~~~~l~~~~~~-~~~~~vr~~a~~~ 736 (1004)
.++..+..+.. ......|..++..
T Consensus 770 f~~~a~~~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 770 FLELALSRLTREVETSELRVMLLEV 794 (1010)
T ss_pred HHHHHHHHHhccccchHHHHHHHHH
Confidence 88877766553 2244556655543
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=291.28 Aligned_cols=754 Identities=16% Similarity=0.201 Sum_probs=504.7
Q ss_pred HHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc
Q 001855 57 LTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN 134 (1004)
Q Consensus 57 ~~~~L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~ 134 (1004)
.+..+++++.+ ++++.+|..+..-+.+.-.. +. .-+++.-.|+ .+.+ .+..+|..++..+..=++.
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~------pd----fnnYL~~IL~-~~~~-~d~~~Rs~aGLlLKNnvr~ 78 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLF------PD----FNNYLIYILI-RAKS-EDVPTRSLAGLLLKNNVRG 78 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc------cc----hhceeeEEEe-cccc-cchhHHHHhhhhHhccccc
Confidence 34556666665 78899999888877775332 11 1122221222 2222 3556677666555543332
Q ss_pred ccCCCCcchHHHHH----HHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001855 135 ILPENGWPELLPFM----FQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1004)
Q Consensus 135 ~~~~~~~~~ll~~L----~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1004)
.++ ..-++...++ ++.+.++++..|...=.++..+.+.-+ ...+++++|.+.+.|.++ +......|+.+|.
T Consensus 79 ~~~-~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~---~~~wpelLp~L~~~L~s~-d~n~~EgA~~AL~ 153 (885)
T KOG2023|consen 79 HYN-SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG---LQHWPELLPQLCELLDSP-DYNTCEGAFGALQ 153 (885)
T ss_pred ccc-CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc---cccchhHHHHHHHHhcCC-cccccchhHHHHH
Confidence 222 1112333333 334444555444332223333333221 236799999999999997 8888999999999
Q ss_pred HHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHH
Q 001855 211 NFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGT 290 (1004)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~v 290 (1004)
.+.+......+.+....-+..+++.+.+..+++++.+|..|+.|+..++-..+..+.-+++.+++.++... .|.++++
T Consensus 154 KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFala--nD~~~eV 231 (885)
T KOG2023|consen 154 KICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALA--NDEDPEV 231 (885)
T ss_pred HHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHc--cCCCHHH
Confidence 98875321111111122344556666666677899999999999999998888889999999999999887 4678999
Q ss_pred HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc------cccCCCCCCccccCCcccchHHHHHHH
Q 001855 291 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP------LWHSAETEDEDAGESSNYSVGQECLDR 364 (1004)
Q Consensus 291 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~------~~~~~~~~~~d~~~~~~~~~a~~~l~~ 364 (1004)
|.+.+..+..+.+. .| .++.+++..++..+++...+.++.- -|..-.+ ..-+......-+..
T Consensus 232 Rk~vC~alv~Llev---r~---dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae------qpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 232 RKNVCRALVFLLEV---RP---DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE------QPICKEVLQPYLDK 299 (885)
T ss_pred HHHHHHHHHHHHHh---cH---HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc------CcCcHHHHHHHHHH
Confidence 99999999998884 33 3566788888888888766554321 1110000 00000000001111
Q ss_pred HH----HhcCCCcch-----------------HHHHHHHHHh----h-c-------C----------CChhHHHHHHHHH
Q 001855 365 LA----IALGGNTIV-----------------PVASEQLPAY----L-A-------A----------PEWQKHHAALIAL 401 (1004)
Q Consensus 365 l~----~~~~~~~~~-----------------~~l~~~l~~~----l-~-------~----------~~~~~r~aal~~l 401 (1004)
+. ..+...+.- +.+-|.+.+. . . + .+|..|..+..++
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL 379 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL 379 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence 10 000000000 0111111110 0 0 0 2399999999999
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHH
Q 001855 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1004)
Q Consensus 402 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a 481 (1004)
..++...++ +.++.++|.+...|.++.+.||+++..++|.+++.+-..+ .+|++.++|.++..|.| +.+-||.-+
T Consensus 380 DVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~-~p~LpeLip~l~~~L~D-KkplVRsIT 454 (885)
T KOG2023|consen 380 DVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF-VPHLPELIPFLLSLLDD-KKPLVRSIT 454 (885)
T ss_pred HHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc-ccchHHHHHHHHHHhcc-Cccceeeee
Confidence 999988776 5577888999999999999999999999999999988777 78999999999999999 889999999
Q ss_pred HHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccc
Q 001855 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSN 561 (1004)
Q Consensus 482 ~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 561 (1004)
|++|+++....-.+.-..|+.+++..++..+-+.+.+|+++|+++++.+-...+.++.||++.|+..+...++....++.
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 99999998765434334788899999999888999999999999999999999999999999999999999987655544
Q ss_pred hhhhHHHHHHHHHHHhhhChhhhh-hhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHH
Q 001855 562 RMLRAKSMECISLVGMAVGKDKFR-DDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 640 (1004)
Q Consensus 562 ~~l~~~a~~~l~~l~~~~~~~~~~-~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll 640 (1004)
.. .++++|+++..+|...-. .|.+-+|+.+++-++ .+..++.-.--.+.|+..++.++|..|.||.+.+....+
T Consensus 535 lI----LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~-~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~ 609 (885)
T KOG2023|consen 535 LI----LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWE-LLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCF 609 (885)
T ss_pred eh----HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHH-hcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHH
Confidence 33 388999999999843222 367778888887443 222233323346778888888888888888777766555
Q ss_pred HHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccc
Q 001855 641 QSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 720 (1004)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~ 720 (1004)
..+.. ++..+++.... |-
T Consensus 610 ~il~~------------------------------------------------t~q~~~~~~~~---~~----------- 627 (885)
T KOG2023|consen 610 RILQK------------------------------------------------TLQLLAKVQQD---PT----------- 627 (885)
T ss_pred HHHHH------------------------------------------------HHHHHHhccCC---cc-----------
Confidence 54421 11111111000 00
Q ss_pred cCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhC
Q 001855 721 LKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (1004)
Q Consensus 721 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 800 (1004)
.. .++.+.-..+...+..+....+ ..+.+ |+
T Consensus 628 ~~-~pdkdfiI~sLDL~SGLaegLg-------------~~ie~--------Lv--------------------------- 658 (885)
T KOG2023|consen 628 VE-APDKDFIIVSLDLLSGLAEGLG-------------SHIEP--------LV--------------------------- 658 (885)
T ss_pred cc-CCCcceEEEeHHHHhHHHHHhh-------------hchHH--------Hh---------------------------
Confidence 00 0011111122222222222110 00000 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHH
Q 001855 801 PLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD 880 (1004)
Q Consensus 801 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 880 (1004)
.+.. +.+.+..++.. ....+|.++..++|.+.+.+.+.+.|++.
T Consensus 659 ---a~sn---l~~lll~C~~D------------------------------~~peVRQS~FALLGDltk~c~~~v~p~~~ 702 (885)
T KOG2023|consen 659 ---AQSN---LLDLLLQCLQD------------------------------EVPEVRQSAFALLGDLTKACFEHVIPNLA 702 (885)
T ss_pred ---hhcc---HHHHHHHHhcc------------------------------CChHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 0000 11111111110 23457888999999999999999999999
Q ss_pred HHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHhhcccch
Q 001855 881 ELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE--NQDVRQAAVYGLGVCAEFGGSVV 958 (1004)
Q Consensus 881 ~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~--~~~vr~~a~~~lg~l~~~~~~~~ 958 (1004)
.++|.+..-+ .....++-.+|..++|++...+|....+|+..++..+...++.+ ...+-.|.+.++|.+...+|+.+
T Consensus 703 ~fl~~lg~Nl-~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~v 781 (885)
T KOG2023|consen 703 DFLPILGANL-NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEV 781 (885)
T ss_pred HHHHHHhhcC-ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhc
Confidence 9999988665 34456677889999999999999999999999999998888754 46788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhhhhcC
Q 001855 959 KPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQLFLHG 1004 (1004)
Q Consensus 959 ~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~~~~~ 1004 (1004)
.|+.+.........+..- ++.+.|++|-.-+|.++..+|+|
T Consensus 782 Ap~l~~f~~pWc~sl~~i-----~DneEK~sAFrG~c~mi~vNp~~ 822 (885)
T KOG2023|consen 782 APHLDSFMRPWCTSLRNI-----DDNEEKESAFRGLCNMINVNPSG 822 (885)
T ss_pred chhHHHHHHHHHHHhccc-----ccchhHHHHHHHHHHheeeCchh
Confidence 999999999999888654 47789999999999999999985
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.3e-27 Score=249.28 Aligned_cols=659 Identities=18% Similarity=0.266 Sum_probs=438.2
Q ss_pred HHHHHcCCChHHHHHHHHHhcCC---ChHHHHHHHHHHHH-hhhcCchH---H---------------HHHHHHHHccCC
Q 001855 12 QLAVILGPDSAPFETLISHLMST---SNEQRSEAELLFNL-CKQQDPDS---L---------------TLKLAHLLQRSP 69 (1004)
Q Consensus 12 ~~~~~~~~d~~~l~~ll~~~~s~---~~~~r~~A~~~L~~-~~~~~p~~---~---------------~~~L~~il~~~~ 69 (1004)
+..+.-.-|..++..+|...+.. ....|..|--.|+. +...+|+. + -..++.-| .++
T Consensus 24 ~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL-~~~ 102 (859)
T KOG1241|consen 24 QLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTL-GSP 102 (859)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCC
Confidence 34444446777777777665432 23567766666642 22223321 1 11111111 135
Q ss_pred CHHHHHHHHHHHHHhcccC-CCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC---CCcchHH
Q 001855 70 HPEARAMAAVLLRKLLTRD-DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELL 145 (1004)
Q Consensus 70 ~~~~r~~a~~~L~~~i~~~-~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll 145 (1004)
.|..+..|+.++..+.... ....|+ .+-..+..-...++...+++...+++|.|....-|+ ...++++
T Consensus 103 ep~~~s~Aaq~va~IA~~ElP~n~wp--------~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIELPQNQWP--------ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred CCCccchHHHHHHHHHHhhCchhhCH--------HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 5666667777766665543 234563 233344444455555579999999999999876663 2445666
Q ss_pred HHHHHhhcC--CChhHHHHHHHHHHHhhhhHhhhccc--cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch
Q 001855 146 PFMFQCVSS--DSVKLQESAFLIFAQLSQYIGDTLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1004)
Q Consensus 146 ~~L~~~l~~--~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 221 (1004)
-.+.+.... ++..+|.+|+.+|..-.+.....|.. ..+-+++....+.+.+ +.+++.+|+.||..++..+
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~-d~~i~~aa~~ClvkIm~Ly----- 248 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP-DEEIQVAAFQCLVKIMSLY----- 248 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC-cHHHHHHHHHHHHHHHHHH-----
Confidence 667776654 35789999999999888776654432 3455666766677776 9999999999999988753
Q ss_pred HhHHHhhHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHHccc-------hHHH------------HHhHHHHHHHHHHhh
Q 001855 222 RDRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGTE-------PRFL------------RRQLVDVVGSMLQIA 281 (1004)
Q Consensus 222 ~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-------~~~~------------~~~~~~i~~~l~~~~ 281 (1004)
.+....++. .++..-.....++++++...+++.++.+++.. .+.. ...++.++|.+++.+
T Consensus 249 Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L 328 (859)
T KOG1241|consen 249 YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELL 328 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHH
Confidence 121222111 23333344556789999999999999776432 1111 122346777777766
Q ss_pred cCC-----CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccc
Q 001855 282 EAE-----SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS 356 (1004)
Q Consensus 282 ~~~-----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~ 356 (1004)
... +++..+...|-.|+.-++... + ..++|.+++.+...-..|+|. .+.
T Consensus 329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~~-------~------D~Iv~~Vl~Fiee~i~~pdwr-------------~re 382 (859)
T KOG1241|consen 329 TKQDEDDDDDDWNPAKAAGVCLMLFAQCV-------G------DDIVPHVLPFIEENIQNPDWR-------------NRE 382 (859)
T ss_pred HhCCCCcccccCcHHHHHHHHHHHHHHHh-------c------ccchhhhHHHHHHhcCCcchh-------------hhh
Confidence 432 123345666666666666531 1 223333333333222334443 445
Q ss_pred hHHHHHHHHHHhcCC---CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHH--HHhHHHHHHHHHhhCCCCC
Q 001855 357 VGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM--VKNLEQVLSMVLNSFRDPH 431 (1004)
Q Consensus 357 ~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~d~~ 431 (1004)
++...++.+-..-.+ ..+++..+|.+...+.|+.-.+|.++.++||.+++.+++.+ ..++..+++.+..+++| +
T Consensus 383 aavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-e 461 (859)
T KOG1241|consen 383 AAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-E 461 (859)
T ss_pred HHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-C
Confidence 666666555432211 24667778888888889888888999999999999998744 35678888999999875 5
Q ss_pred hhHHHHHHHHHHHhhhhhchh--------HHhhhhhhhHHHHHhhcC--CCCChhHHHHHHHHHHHHhhcCCc-------
Q 001855 432 PRVRWAAINAIGQLSTDLGPD--------LQNQFHPQVLPALAGAMD--DFQNPRVQAHAASAVLNFSENCTP------- 494 (1004)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~--------~~~~~~~~ll~~l~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~------- 494 (1004)
|+|-..+||++..+++..... ...++++.++..|++.-. |......|.+|..+|..+++....
T Consensus 462 Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 462 PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999766322 113467777777776543 213456788888888777655321
Q ss_pred ----------------------------------------------ccccCchHHHHHHHHHHhhc-CChhHHHHHHHHH
Q 001855 495 ----------------------------------------------EILTPYLDGIVSKLLVLLQN-GKQMVQEGALTAL 527 (1004)
Q Consensus 495 ----------------------------------------------~~l~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l 527 (1004)
..+.++.+.++..++..+++ .+.-+.+.++.++
T Consensus 542 ~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV 621 (859)
T KOG1241|consen 542 KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAV 621 (859)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 13445566666666666666 3455889999999
Q ss_pred HHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-HhcCCCCCC
Q 001855 528 ASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMETD 606 (1004)
Q Consensus 528 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~~~~~~ 606 (1004)
+.++...|..|.+|.+.+.|+|...+++. .+..+-..++...|.++++++ +.|.||.+.+++.|++ +.++.. .
T Consensus 622 ~tl~~~Lg~~F~kym~~f~pyL~~gL~n~---~e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~~~--h 695 (859)
T KOG1241|consen 622 STLAESLGKGFAKYMPAFKPYLLMGLSNF---QEYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSPNL--H 695 (859)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCccc--c
Confidence 99999999999999999999999999764 345566778889999999999 7899999999999999 444443 3
Q ss_pred CchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHH
Q 001855 607 DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLE 686 (1004)
Q Consensus 607 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 686 (1004)
+.++..++.+|+.|+.+.|.+|.+|+..+++.+-..-+.+++.. ++++.+|. .+
T Consensus 696 R~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~-------------~~~~~dYv-------------d~ 749 (859)
T KOG1241|consen 696 RNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPA-------------DDSMVDYV-------------DE 749 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCC-------------cccHHHHH-------------HH
Confidence 55899999999999999999999999999997766653332210 23333333 23
Q ss_pred HHHHHHHHHHHHHHHhc-----ccccccHHHHHHHhccccCccC-CHHHHHHHHHhHHHHHHHH
Q 001855 687 EKATACNMLCCYADELK-----EGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSA 744 (1004)
Q Consensus 687 ~~~~a~~~l~~l~~~~~-----~~~~p~~~~~~~~l~~~~~~~~-~~~vr~~a~~~l~~l~~~~ 744 (1004)
.|..++.+...+...++ ..+.||+++++..+-+...+.. .+.+-.+|+..+|+|+..+
T Consensus 750 LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~f 813 (859)
T KOG1241|consen 750 LREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMF 813 (859)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHc
Confidence 45666666666666655 3477999999998877655433 3677888889999999876
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.98 E-value=5.4e-26 Score=244.50 Aligned_cols=625 Identities=15% Similarity=0.181 Sum_probs=429.0
Q ss_pred HHHHHHhhcchHhHHHHHHHHHHHHHhcc---cCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHH
Q 001855 107 MLLQSIQLESAKSISKKLCDTVSELASNI---LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1004)
Q Consensus 107 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~---~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1004)
.|++.+.+ +++..|-++..-+.+=...+ ...+..+..+..+++.+.+.++++...|.+|++-+.+.++++ .+.
T Consensus 9 ~Llekmts-sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le 84 (1233)
T KOG1824|consen 9 NLLEKMTS-SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLE 84 (1233)
T ss_pred HHHHHccC-CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHH
Confidence 45566665 56777776554433222211 222577889999999999999999999999999999887765 455
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHcc
Q 001855 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN--NGNEATAQEALELLIELAGT 261 (1004)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~~~ 261 (1004)
.++.-+...+-+. ....|..+.-.|...+..++.......-...++.+.+.+.+.+. .+...++..++.++..+..+
T Consensus 85 ~~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 TIVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 5555554443343 45566555555555555553211111112344455555554442 34555899999999999998
Q ss_pred chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccC
Q 001855 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1004)
Q Consensus 262 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1004)
++..+.++=..+..+++..+ ......+|..|+-++..++.. .+ ......++..+...+....
T Consensus 164 ~g~ll~~fh~~il~~l~~ql--~s~R~aVrKkai~~l~~la~~---~~------~~ly~~li~~Ll~~L~~~~------- 225 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQL--QSPRLAVRKKAITALGHLASS---CN------RDLYVELIEHLLKGLSNRT------- 225 (1233)
T ss_pred hcccCcchHHHHHHHHhhcc--cChHHHHHHHHHHHHHHHHHh---cC------HHHHHHHHHHHHhccCCCC-------
Confidence 88877665556666665544 334677999999999988873 22 2345667777766554331
Q ss_pred CCCCCccccCCcccchHHHHHHHHHHhcCCC--cchHHHHHHHHHhh---cCCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001855 342 AETEDEDAGESSNYSVGQECLDRLAIALGGN--TIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1004)
Q Consensus 342 ~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1004)
..+..+...+++..++...|.. ...+.++|.+.... +..+.+.|+.++.+++.+...|+..+.+|.
T Consensus 226 ---------q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~ 296 (1233)
T KOG1824|consen 226 ---------QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHV 296 (1233)
T ss_pred ---------chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccc
Confidence 2223455677888887766531 33444555555555 567789999999999999999999999999
Q ss_pred HHHHHHHHhhCC-CC---------------------------------ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001855 417 EQVLSMVLNSFR-DP---------------------------------HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1004)
Q Consensus 417 ~~i~~~l~~~l~-d~---------------------------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 462 (1004)
+.++..++..+. |+ +|.||++|++|+..++..-. ++...++..+-
T Consensus 297 pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~-E~L~~~~q~l~ 375 (1233)
T KOG1824|consen 297 PEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL-EMLPDFYQTLG 375 (1233)
T ss_pred hHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHhC
Confidence 999988887653 22 28999999999998876543 34467889999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhhcCCc--------------------ccccCchHHHHHHHHHHhhcCChhHHHH
Q 001855 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTP--------------------EILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1004)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~--------------------~~l~~~~~~i~~~l~~~l~~~~~~vr~~ 522 (1004)
|.++..+++ ....|+.....++..++...++ ..+....+.|+..+-+.+.+.+.+.|..
T Consensus 376 p~lI~RfkE-REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~ 454 (1233)
T KOG1824|consen 376 PALISRFKE-REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQG 454 (1233)
T ss_pred HHHHHHHHH-HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhh
Confidence 999999999 7888998888888888765431 1112223445555555566566667888
Q ss_pred HHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-HhcC
Q 001855 523 ALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGS 601 (1004)
Q Consensus 523 a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~ 601 (1004)
.+..+..++...++...++.+.++|.+...+....+ ...++..++.++.......|++.|-|+...+.+.+.. ..+.
T Consensus 455 cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSs--ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~ 532 (1233)
T KOG1824|consen 455 CFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSS--SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDP 532 (1233)
T ss_pred HHHHHHHHHHhCcchhhhcccccchhhhhhcCCccc--hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCc
Confidence 889999999999888899999999999998865332 3345666777777777777889999999988887776 3331
Q ss_pred CCCCCCchhhHHHHHHHHHHhHhc-------cCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcC
Q 001855 602 QMETDDPTTSYMLQAWARLCKCLG-------QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1004)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1004)
+ -.+...++.....+++... -++.||+..+....++.+....
T Consensus 533 -f---yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d--------------------------- 581 (1233)
T KOG1824|consen 533 -F---YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATD--------------------------- 581 (1233)
T ss_pred -h---HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccc---------------------------
Confidence 1 2244445555666776654 2466888888888877774321
Q ss_pred CceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Q 001855 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAP 754 (1004)
Q Consensus 675 ~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 754 (1004)
...+.|+.|+.++|.+..++|+.+...++.+++.+++.+. ++-.|-.|++++..+.....+
T Consensus 582 --------~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~---nEiTRl~AvkAlt~Ia~S~l~-------- 642 (1233)
T KOG1824|consen 582 --------SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG---NEITRLTAVKALTLIAMSPLD-------- 642 (1233)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh---chhHHHHHHHHHHHHHhccce--------
Confidence 1145688899999999999998888889999999888876 667899999999888764310
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 001855 755 GRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITAS 822 (1004)
Q Consensus 755 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 822 (1004)
-.....+..++|.+..-+... ....+...+.++..+++..+..++++.++.++..+.+++...
T Consensus 643 ----i~l~~~l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises 705 (1233)
T KOG1824|consen 643 ----IDLSPVLTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES 705 (1233)
T ss_pred ----eehhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH
Confidence 112334455555555544432 234555677778888888777777777777777777766553
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-25 Score=238.01 Aligned_cols=590 Identities=17% Similarity=0.231 Sum_probs=397.9
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc----
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP---- 94 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~---- 94 (1004)
+.+.+.+.|..+.+||+++|+.||+.|+++.. ++. |...+++++.+ ..++.+|..|++.+|+.++++ |.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~-q~~-y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~----W~~~~~ 76 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEG-QQN-YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN----WIPAED 76 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhcc-CCC-chHHHHHHHhccCcChhHHHHHHHHHHHHHHhc----cCcCCC
Confidence 56778888999999999999999999999998 444 66788888877 448999999999999999998 54
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 001855 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1004)
Q Consensus 95 ---~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~ 171 (1004)
.+.++.++.||..++.++.+ ....++..++.+++.|+++++| +.||+|+|.|...+++.|-++-.+.+..-..+.
T Consensus 77 ~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 77 SPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred CccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 47788999999999999987 6789999999999999999999 799999999999999988877777777777676
Q ss_pred hhHhhh---------ccccHH----HHHHHHHHh---hcCC-CChH---HHHHHHHHHHHHHHhhcCcchHhHHHhhHHH
Q 001855 172 QYIGDT---------LTPHLK----HLHAVFLNC---LTNS-NNPD---VKIAALNAVINFIQCLTSSADRDRFQDLLPL 231 (1004)
Q Consensus 172 ~~~~~~---------~~~~~~----~l~~~l~~~---l~~~-~~~~---vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (1004)
+..-.. +...+. .+..++.+. .+.. ++.. +-...+..+..+...+...+-++.|.+++..
T Consensus 155 kr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~ 234 (960)
T KOG1992|consen 155 KRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKT 234 (960)
T ss_pred HhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHH
Confidence 653221 111111 222222222 1111 1222 1122222333344443333356667777777
Q ss_pred HHHHHHHHHhcCCh-------------hHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCc---chHHHHHHH
Q 001855 232 MMRTLTESLNNGNE-------------ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL---EEGTRHLAI 295 (1004)
Q Consensus 232 ~l~~l~~~l~~~~~-------------~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~vr~~a~ 295 (1004)
+|..+.+.+..+++ +++...|+.+.-.+.+|.+.|.+++++++...+.++..... -+.....|+
T Consensus 235 wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al 314 (960)
T KOG1992|consen 235 WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKAL 314 (960)
T ss_pred HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 77777766652211 36678899999999999999999999999888877643222 355778899
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHH-HHhhcCCCCCccccCC-CCC----C-ccccCCcccchHHHHHHHHHHh
Q 001855 296 EFVITLAEARERAPGMMRKLPQFINRLFAIL-MSMLLDIEDDPLWHSA-ETE----D-EDAGESSNYSVGQECLDRLAIA 368 (1004)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~l~~~~~~~~~~~~-~~~----~-~d~~~~~~~~~a~~~l~~l~~~ 368 (1004)
+++.++++..++..-+ .....+..+...+ ++.+.-..+|.+...+ ..| | |..|.++.+++|.+++..|+..
T Consensus 315 ~FLt~V~~r~~y~~~F--~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~ 392 (960)
T KOG1992|consen 315 QFLTSVSRRPHYAELF--EGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKN 392 (960)
T ss_pred HHHHHHHhhhhhHhhh--cchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHH
Confidence 9999999853322111 1112233332222 1111111112111111 100 0 1122445678899999999999
Q ss_pred cCCCcchHHHHHHHHHhhc------CCChhHHHHHHHHHHHHHhhcHH------------HHHHhH-HHHHHHHHhhCCC
Q 001855 369 LGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNL-EQVLSMVLNSFRD 429 (1004)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~------------~~~~~l-~~i~~~l~~~l~d 429 (1004)
+. ..+.+.+...++..+. +.+|+.+..++..+.+++..... ....++ ..++|.+...=..
T Consensus 393 fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn 471 (960)
T KOG1992|consen 393 FE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVN 471 (960)
T ss_pred hc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccc
Confidence 85 4666666666666665 46899999999999888754221 112222 3344555443345
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC--------CcccccCch
Q 001855 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC--------TPEILTPYL 501 (1004)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--------~~~~l~~~~ 501 (1004)
++|.++..+.+-+-.+=..++ ..++-.++|.+...+.. +...|...|+.++..++... +++.+.||.
T Consensus 472 ~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~ 546 (960)
T KOG1992|consen 472 EFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFV 546 (960)
T ss_pred cccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhcchHH
Confidence 688889888765554444444 56788999999999998 77888899999999987533 345678889
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh-cCcccchhhhHHHHHHHHHHHhhhC
Q 001855 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMECISLVGMAVG 580 (1004)
Q Consensus 502 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~l~~~a~~~l~~l~~~~~ 580 (1004)
..++..+.+.++.+...--+....++..+.....+...|+.+.+++.|-+++.. ..++.....-...++.++.+.+..+
T Consensus 547 ~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 547 EILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTC 626 (960)
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 999999998888777666677888999988888888889999999888887654 2233333444557888888877654
Q ss_pred hh---hhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCc
Q 001855 581 KD---KFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF 628 (1004)
Q Consensus 581 ~~---~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 628 (1004)
+. ....+...+++.+..+...++ .+..++++..++.++...+...
T Consensus 627 ~~~~~~vs~~e~aL~p~fq~Il~eDI---~EfiPYvfQlla~lve~~~~~i 674 (960)
T KOG1992|consen 627 KANPSAVSSLEEALFPVFQTILSEDI---QEFIPYVFQLLAVLVEHSSGTI 674 (960)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCC
Confidence 32 234444455544444222111 2355677777777777766633
No 12
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.97 E-value=3e-24 Score=231.38 Aligned_cols=702 Identities=17% Similarity=0.215 Sum_probs=436.2
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcccCCCCcccC--
Q 001855 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1004)
Q Consensus 19 ~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~r~~a~~~L~~~i~~~~~~~w~~-- 95 (1004)
++.+.+..+|.+++|+|+++|.+||.+|+++.. +++|-..|.++..+. .+-+.||.|.++|++++.+| |..
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~--~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~h----W~~~~ 74 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLEL--TEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKH----WSPNF 74 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhcccc--chHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh----CCChH
Confidence 356789999999999999999999999999998 344779999999874 68899999999999999999 542
Q ss_pred --------CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHH
Q 001855 96 --------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIF 167 (1004)
Q Consensus 96 --------l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l 167 (1004)
.+.+.|..||+.|++++-+ ++.++|+.++.+++.|+..++| +.||+++|.+..++.+.+.+..++|+++|
T Consensus 75 E~fr~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL 152 (1005)
T KOG2274|consen 75 EAFRYPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVL 152 (1005)
T ss_pred hhccCCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHH
Confidence 4677899999999999995 7999999999999999999999 79999999999999999999999999999
Q ss_pred HHhhhhHh-hhc----cccHHHHHHHHHHhhcCCCChHHHHHHH--HHHHHHHHhhc---C---cchHhHHHhhHHHHHH
Q 001855 168 AQLSQYIG-DTL----TPHLKHLHAVFLNCLTNSNNPDVKIAAL--NAVINFIQCLT---S---SADRDRFQDLLPLMMR 234 (1004)
Q Consensus 168 ~~l~~~~~-~~~----~~~~~~l~~~l~~~l~~~~~~~vr~~a~--~~l~~~~~~~~---~---~~~~~~~~~~~~~~l~ 234 (1004)
..+..... ++. ...++.+...+. ..... +...|..++ +.+..++..+. . ......+...++.++.
T Consensus 153 ~el~~ev~~ee~~~~~~~~l~~m~~~f~-~~~~~-s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 153 AELSDEVDVEEMFFVGPVSLAEMYRIFA-LTIVY-SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhhh-hcccc-chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987753 221 112333333322 22222 333443333 33333333221 1 0112233455666777
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcC--------------------CCcc----
Q 001855 235 TLTESLNNG---NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------ESLE---- 287 (1004)
Q Consensus 235 ~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~--------------------~~~~---- 287 (1004)
.+.+.++-+ +...|....+++..++++.|..+.+++...++..++.... .+.+
T Consensus 231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~ 310 (1005)
T KOG2274|consen 231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEK 310 (1005)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhh
Confidence 776666533 4467889999999999999999888877666665544310 0111
Q ss_pred --hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC-CCccccCCCCC---CccccCCcccchHHHH
Q 001855 288 --EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE-DDPLWHSAETE---DEDAGESSNYSVGQEC 361 (1004)
Q Consensus 288 --~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~---~~d~~~~~~~~~a~~~ 361 (1004)
.......++++..++...... +..+.-+..+++.+...+.-.+ .-..|..+... +|+++ ...+..+...
T Consensus 311 ~~~~l~i~i~eF~s~i~t~~~~~----~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~ 385 (1005)
T KOG2274|consen 311 SVETLVIQIVEFLSTIVTNRFLS----KTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDL 385 (1005)
T ss_pred ChHHhhhhHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHH
Confidence 123456677888887752111 1112223334444444333222 12235443321 22222 3334444445
Q ss_pred HHHHHHhcCCCcchHHHHHH----HHHh-----hc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-CCC
Q 001855 362 LDRLAIALGGNTIVPVASEQ----LPAY-----LA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDP 430 (1004)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~----l~~~-----l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~ 430 (1004)
+..+...+|...+ ..+... +.+. ++ ..+|+...+.+.+......+. .....+..++..+..++ ...
T Consensus 386 ~~~v~~~f~~~~i-~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e 462 (1005)
T KOG2274|consen 386 LLEVITTFGNEGI-NPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQE 462 (1005)
T ss_pred HHHHHHhccchhh-hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhccccc
Confidence 5555555553322 222222 2221 22 246888888888777766332 12244555566666666 456
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHH
Q 001855 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1004)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~ 510 (1004)
.|..-..++++++.++..+... .+.+..++...+..+.-...+.++.+|+.++...+ ++..+.+++|.+++.|.+
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~q 537 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQ 537 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHH
Confidence 7777779999999988874322 34566777777776654356678888888888777 667788999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHH
Q 001855 511 LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 590 (1004)
Q Consensus 511 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~ 590 (1004)
+....+..+.....+++..++..-++.-...-..+.|.++.++....++ ..+-..+-+++-.+.... ....|+...
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D--P~V~~~~qd~f~el~q~~--~~~g~m~e~ 613 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED--PQVASLAQDLFEELLQIA--ANYGPMQER 613 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHH--HhhcchHHH
Confidence 9999888888888888888886654332234467778888877654332 244455566666665532 356678888
Q ss_pred HHHHHHHHhcCCC-CCCCchhhHHHHHHHHHHhHhccCcc-cchhhhhHHHHHHcccCCCccccCCCCCcccccCCCccc
Q 001855 591 VMEVLMSLQGSQM-ETDDPTTSYMLQAWARLCKCLGQDFL-PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 668 (1004)
Q Consensus 591 i~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1004)
+++.+++.....- .........++..+..+.+..+..+. .++....|.+.++.-... |.+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd----------------D~~t- 676 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD----------------DHET- 676 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC----------------ChHH-
Confidence 8888888543221 11123445556666667666665543 234555666666652211 1111
Q ss_pred chhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcc-----ccccc--HHHHHHHhccccCccCCHHHHHHHHHhHHHHH
Q 001855 669 ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKE-----GFFPW--IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (1004)
Q Consensus 669 ~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~-----~~~p~--~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~ 741 (1004)
-..|-.+|..++....+ +..|- +..++..+..+++. +....++...|.++
T Consensus 677 -------------------lQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV 733 (1005)
T KOG2274|consen 677 -------------------LQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLV 733 (1005)
T ss_pred -------------------HHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHH
Confidence 12344556666555321 22232 33566666666653 33333444566665
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001855 742 RSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (1004)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~ 796 (1004)
....... +..+.+.++.|+...+..+..-....+...++..+++++
T Consensus 734 ~tLit~a---------~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 734 LTLITHA---------SSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHHHHH---------HHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5442211 222344445555555555554445566666666666554
No 13
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.1e-22 Score=211.50 Aligned_cols=599 Identities=15% Similarity=0.187 Sum_probs=375.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc-----CCC
Q 001855 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP-----RLS 97 (1004)
Q Consensus 24 l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~-----~l~ 97 (1004)
+.++|+...|+|..+++-||++|+++++ +|++| ..|..++.+ +.+..+|=+|.+.+|+-+.+. |. .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPGF~-~~L~sI~l~~t~dv~vRWmAviyfKNgIdry----WR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPGFF-SKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY----WRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCcHH-HHHHHHHhccccceeeeeehhhhHhcchhHH----hhcCCcccCC
Confidence 4678899999999999999999999999 79865 888888877 667899999999999999988 65 489
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC----ChhHHHHHHHHHHHhhhh
Q 001855 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD----SVKLQESAFLIFAQLSQY 173 (1004)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~----~~~~r~~al~~l~~l~~~ 173 (1004)
+|+|..||..++.... |+++.+..+.|.++++||+.++| ..||+++|.|.+.+++. |....+..+..+..+.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 57999999999999999999999 79999999999988765 777778888888888876
Q ss_pred Hhhh--------ccccHHHHHHHHHHhhcCC------------C------ChHHHHHHHHHHHHHHHh-hcCcchHhHHH
Q 001855 174 IGDT--------LTPHLKHLHAVFLNCLTNS------------N------NPDVKIAALNAVINFIQC-LTSSADRDRFQ 226 (1004)
Q Consensus 174 ~~~~--------~~~~~~~l~~~l~~~l~~~------------~------~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~ 226 (1004)
.+.. |....+.+++++...+-++ . ..++-..+++++..++.. +.++...+ +.
T Consensus 154 Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~ 232 (978)
T KOG1993|consen 154 LATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FF 232 (978)
T ss_pred HHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HH
Confidence 5421 2223344444332221111 0 112223455555555442 22222222 33
Q ss_pred hhHHHHHHHH----HHHHhcC----ChhHHHHH----HHHHHHHHccchHHHHH--hHHHHHHHHHHhhcCC--------
Q 001855 227 DLLPLMMRTL----TESLNNG----NEATAQEA----LELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAE-------- 284 (1004)
Q Consensus 227 ~~~~~~l~~l----~~~l~~~----~~~~~~~a----~~~L~~l~~~~~~~~~~--~~~~i~~~l~~~~~~~-------- 284 (1004)
+-++.+++.= ...+... ..++.... .+++..+.+.+|-.|.. ..+..+++.+..+..+
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 3344444431 1111111 11112222 34455556666655544 3344444444333211
Q ss_pred ---CcchHHHHHHHHHHHHHHHhhhccch-----hhhc----------------chhhHHHHHHHHHHh--hcCCCCCcc
Q 001855 285 ---SLEEGTRHLAIEFVITLAEARERAPG-----MMRK----------------LPQFINRLFAILMSM--LLDIEDDPL 338 (1004)
Q Consensus 285 ---~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~----------------~~~~~~~l~~~l~~~--l~~~~~~~~ 338 (1004)
+.-++...+++..+..+...+.+.+. .... ..+-+..+...++.. +...++-++
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 12233445555555543332111110 0000 012223333333332 122334456
Q ss_pred ccCCCCC---Cccc--cCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCC---------ChhHHHHHHHHHHHH
Q 001855 339 WHSAETE---DEDA--GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---------EWQKHHAALIALAQI 404 (1004)
Q Consensus 339 ~~~~~~~---~~d~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~~l 404 (1004)
|..++++ +++. -+...+.+|..++..+-..++ +-+.|.++..+....+.. ..-.+.|...++|..
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~ 471 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLA 471 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Confidence 7766653 2221 233455677777777776665 566777777775443321 234556666677766
Q ss_pred HhhcHH--HHHHhHHH-HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHH
Q 001855 405 AEGCAK--VMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1004)
Q Consensus 405 ~~~~~~--~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a 481 (1004)
+....+ .+...+.+ ++|.+. --.+....+|+..+|.+|.++..--+ .+.-+.+..++++.++|.++..|+.++
T Consensus 472 a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt 547 (978)
T KOG1993|consen 472 AYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTT 547 (978)
T ss_pred HHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHH
Confidence 655443 22333332 334333 11223455788999999998874221 345567778888889984478899999
Q ss_pred HHHHHHHhhcC--CcccccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCc
Q 001855 482 ASAVLNFSENC--TPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (1004)
Q Consensus 482 ~~~l~~l~~~~--~~~~l~~~~~~i~~~l~~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 558 (1004)
..++..+++.. .++.+.||++.+...+.++++... .+.|..++..++.++...++.+.||...++..+-.+|...
T Consensus 548 ~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-- 625 (978)
T KOG1993|consen 548 ARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-- 625 (978)
T ss_pred HHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh--
Confidence 99999999864 567788999999999999887643 5678899999999999999999999999999999988653
Q ss_pred ccchhhhHHHHHHHHHHHhhhChh--hhhhhHHHHHHHHHHHhcCCCCCCCc-hhhHHHHHHHHHHhHhccCcccchhhh
Q 001855 559 KSNRMLRAKSMECISLVGMAVGKD--KFRDDAKQVMEVLMSLQGSQMETDDP-TTSYMLQAWARLCKCLGQDFLPYMSVV 635 (1004)
Q Consensus 559 ~~~~~l~~~a~~~l~~l~~~~~~~--~~~~~~~~i~~~l~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~l~~i 635 (1004)
.+...+|.+.+.++..+..++|.. .+.|++-.+++.-..... .++. +.+--+..|....... +.+.|-+-.+
T Consensus 626 ~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~s----P~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L 700 (978)
T KOG1993|consen 626 EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSS----PEHVYLLEDGMELWLTTLMNS-QKLTPELLLL 700 (978)
T ss_pred ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCC----CceeehhhhHHHHHHHHHhcc-cccCHHHHHH
Confidence 355678999999999999999843 355555555554332111 0111 2333445565443332 4455555556
Q ss_pred hHHHHHHc
Q 001855 636 MPPLLQSA 643 (1004)
Q Consensus 636 ~~~ll~~~ 643 (1004)
+|.++..+
T Consensus 701 ~p~l~~~i 708 (978)
T KOG1993|consen 701 FPHLLYII 708 (978)
T ss_pred HHHHHHHH
Confidence 66665555
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.5e-20 Score=192.18 Aligned_cols=664 Identities=15% Similarity=0.201 Sum_probs=401.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHhcC---CChHHHHHHHHHHH-HhhhcCchH-------H----------HHHH-HHHHcc
Q 001855 10 QSQLAVILGPDSAPFETLISHLMS---TSNEQRSEAELLFN-LCKQQDPDS-------L----------TLKL-AHLLQR 67 (1004)
Q Consensus 10 ~~~~~~~~~~d~~~l~~ll~~~~s---~~~~~r~~A~~~L~-~~~~~~p~~-------~----------~~~L-~~il~~ 67 (1004)
+.|.-++..-|.+++..++...+. ++...|-.|--.|+ ++...+|+- | +..+ +.-| .
T Consensus 26 E~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL-~ 104 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRAL-K 104 (858)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHh-c
Confidence 455566666778888777666433 23455555555553 222212210 1 1111 1222 2
Q ss_pred CCCHHHHHHHHHHHHHhcccC-CCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC---Ccch
Q 001855 68 SPHPEARAMAAVLLRKLLTRD-DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPE 143 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~-~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~~ 143 (1004)
+..|.+-..|+.++..+.... .+..|+ .+...+..-...+....++.....+++.+.....|+. ..+.
T Consensus 105 s~epr~~~~Aaql~aaIA~~Elp~~~wp--------~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~ 176 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARMELPNSLWP--------GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNV 176 (858)
T ss_pred CCccHHHHHHHHHHHHHHHhhCccccch--------HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhH
Confidence 556777788888887776654 234564 2333444555556667778888888888887766621 2222
Q ss_pred HHHHHHHhhcC--CChhHHHHHHHHHHHhhhhHhhhcc--ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCc
Q 001855 144 LLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIGDTLT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1004)
Q Consensus 144 ll~~L~~~l~~--~~~~~r~~al~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~ 219 (1004)
++-.+...-.+ ++..+|.+|+.+|..-+....+.|. ...+.+++....+.+.+ +.+++.+|+-|+..+....
T Consensus 177 il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~Ly--- 252 (858)
T COG5215 177 ILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLY--- 252 (858)
T ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHH---
Confidence 23233333222 3568899999999876665544432 24566777777777776 9999999999999987753
Q ss_pred chHhHHHhhHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHHccch--H---------------HHHHhHHHHHHHHHHhh
Q 001855 220 ADRDRFQDLLPL-MMRTLTESLNNGNEATAQEALELLIELAGTEP--R---------------FLRRQLVDVVGSMLQIA 281 (1004)
Q Consensus 220 ~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~---------------~~~~~~~~i~~~l~~~~ 281 (1004)
......++.. +........++++.++...+++.+..+.+..- . +-...+.++++-+++++
T Consensus 253 --Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL 330 (858)
T COG5215 253 --YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL 330 (858)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence 1212222222 22223345568899999999999987765331 1 11112445667676666
Q ss_pred cCC-----CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccc
Q 001855 282 EAE-----SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS 356 (1004)
Q Consensus 282 ~~~-----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~ 356 (1004)
.+. +++..+...|-.|+.-++...+. ..+.++ +......-..+.|. .+.
T Consensus 331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---------~i~~pV----l~FvEqni~~~~w~-------------nre 384 (858)
T COG5215 331 EKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---------KIMRPV----LGFVEQNIRSESWA-------------NRE 384 (858)
T ss_pred HhcCCCccccccchhhhHHHHHHHHHHHhhh---------HhHHHH----HHHHHHhccCchhh-------------hHH
Confidence 432 12334566666666655553110 111222 22221111222232 334
Q ss_pred hHHHHHHHHHHhcCC---CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH-----------------------
Q 001855 357 VGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK----------------------- 410 (1004)
Q Consensus 357 ~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~----------------------- 410 (1004)
++..+++.+...-.. ..+++..+|.+....+|+...++..+.+|+|.++.....
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p 464 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCP 464 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccc
Confidence 444444433221000 134455555555555555555555666666666544321
Q ss_pred --------------------------HHHHhHHHHHHHHHhh--CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001855 411 --------------------------VMVKNLEQVLSMVLNS--FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1004)
Q Consensus 411 --------------------------~~~~~l~~i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 462 (1004)
.+.++.+.++..+++. +.+.....|.+++.+|+.++...++.. .+.+..+.
T Consensus 465 ~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V-~~~~a~~~ 543 (858)
T COG5215 465 FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV-SDILAGFY 543 (858)
T ss_pred hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-HHHHHHHH
Confidence 2223344455544443 234556789999999999999887654 33333333
Q ss_pred HHHHhhcCC--------------CCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCC-hhHHHHHHHHH
Q 001855 463 PALAGAMDD--------------FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTAL 527 (1004)
Q Consensus 463 ~~l~~~l~~--------------~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~-~~vr~~a~~~l 527 (1004)
....+.+.. ....+++..-+..|..++...+++ +++.-+.++..++..+++.+ .-+-...+.++
T Consensus 544 ~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~-ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aI 622 (858)
T COG5215 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD-IEDVEDQLMELFIRILESTKPTTAFGDVYTAI 622 (858)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC-cccHHHHHHHHHHHHHhccCCchhhhHHHHHH
Confidence 333222211 012356778889999999888854 78888889999999998874 45677899999
Q ss_pred HHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCC
Q 001855 528 ASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD 607 (1004)
Q Consensus 528 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~ 607 (1004)
+.+....++.|..|.+.++|++.+.++. .++.+-..++..+|.+++++| ..|.+|.+.++..|.+...+. ..++
T Consensus 623 sal~~sl~e~Fe~y~~~fiPyl~~aln~----~d~~v~~~avglvgdlantl~-~df~~y~d~~ms~LvQ~lss~-~~~R 696 (858)
T COG5215 623 SALSTSLEERFEQYASKFIPYLTRALNC----TDRFVLNSAVGLVGDLANTLG-TDFNIYADVLMSSLVQCLSSE-ATHR 696 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCh-hhcc
Confidence 9999999999999999999999999832 345667778999999999999 789999999999999944322 1345
Q ss_pred chhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHH
Q 001855 608 PTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEE 687 (1004)
Q Consensus 608 ~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 687 (1004)
.++.+++.+|+.++.+.|.+|.+|+..++-.+.+.-+.+|... +-+..|+. ......
T Consensus 697 ~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~-------------~~~~~dy~----------~~~~~~ 753 (858)
T COG5215 697 DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD-------------EVYVDDYR----------KNAVQL 753 (858)
T ss_pred ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC-------------ceeHHHHH----------HHHHHH
Confidence 6899999999999999999999999999976665555554310 01111110 000111
Q ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccC-CHHHHHHHHHhHHHHHHHHH
Q 001855 688 KATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSAK 745 (1004)
Q Consensus 688 ~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~vr~~a~~~l~~l~~~~~ 745 (1004)
...|.-.++.-.++-.+.+.||+..++..+-....+.. .+...+++...++++...+.
T Consensus 754 v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfp 812 (858)
T COG5215 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFP 812 (858)
T ss_pred HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCC
Confidence 12233333333333456799999999988766555532 34555678888999887653
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.8e-21 Score=204.35 Aligned_cols=670 Identities=15% Similarity=0.188 Sum_probs=440.2
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc
Q 001855 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1004)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 262 (1004)
..++..++. .++. .+..|+.+++.|..=...+. ....|..++|.+++.-. +...|...+.++..+....
T Consensus 363 r~i~~llLk-vKNG-~ppmRk~~LR~ltdkar~~g---a~~lfnqiLpllMs~tL------eDqerhllVkvidriLykl 431 (1172)
T KOG0213|consen 363 RKIMRLLLK-VKNG-TPPMRKSALRILTDKARNFG---AGPLFNQILPLLMSPTL------EDQERHLLVKVIDRILYKL 431 (1172)
T ss_pred HHHHHHHHh-hcCC-CchhHHHHHHHHHHHHHhhc---cHHHHHHHHHHHcCccc------cchhhhhHHHHHHHHHHhh
Confidence 445555553 3565 78999999998877665442 12334444443333211 2345666777777776655
Q ss_pred hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCC
Q 001855 263 PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1004)
Q Consensus 263 ~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1004)
.....||+..|+-.+-..+ -+.+...|...-+.++.++..- .+ ..++..+ . ++.
T Consensus 432 DdlvrpYVhkILvViepll--ided~yar~egreIisnLakaa--------Gl----a~mistm----r-----pDi--- 485 (1172)
T KOG0213|consen 432 DDLVRPYVHKILVVIEPLL--IDEDYYARVEGREIISNLAKAA--------GL----ATMISTM----R-----PDI--- 485 (1172)
T ss_pred cccchhceeeeEEEeecce--ecchHHHhhchHHHHHHHHHHh--------hh----HHHHHhh----c-----CCc---
Confidence 5666666665443222222 1334555666667777777631 11 1122221 1 000
Q ss_pred CCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH
Q 001855 343 ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (1004)
Q Consensus 343 ~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 421 (1004)
|..+.-.++....++..++..+| .+.++|++.....+. +|+.|+.++.+..+++.-.+-...+|+..++.
T Consensus 486 -----dn~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 486 -----DNKDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred -----ccccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 00011134556677888888887 677889999988886 99999999999999998777667799999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCch
Q 001855 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL 501 (1004)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~ 501 (1004)
.+-.++.|.+..||..++.+++.+++...|.- ...++.++..|.+.+.. .....-.+-+.+++.++....++.-.-|-
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyT 634 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYT 634 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhH
Confidence 99999999999999999999999999876644 56788999999988876 33445556677888888777655444556
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhCh
Q 001855 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1004)
Q Consensus 502 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~ 581 (1004)
..++-.+..-+++++.+.+..++..+..++...|-+=.=....++|.++..+......-++....+..++-..++..+|.
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~ 714 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS 714 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc
Confidence 68888888999999999999999999999887763311122456666665554422222333344456777778888883
Q ss_pred hhhhhhHHHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHhHhccC-cc-cchhhhhHHHHHHcccCCCccccCCCCCc
Q 001855 582 DKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQD-FL-PYMSVVMPPLLQSAQLKPDVTITSADSDN 658 (1004)
Q Consensus 582 ~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~-~~l~~i~~~ll~~~~~~~~~~~~~~~~~~ 658 (1004)
. +++.-++. +.+ ..++.|.-...+...+...+|.. +. ..-..++..++..++.+..
T Consensus 715 ~-------~~v~R~v~~lkd----e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt---------- 773 (1172)
T KOG0213|consen 715 D-------PIVSRVVLDLKD----EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT---------- 773 (1172)
T ss_pred h-------HHHHHHhhhhcc----ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc----------
Confidence 2 23332222 222 33456666667777777666643 43 3345566777777653221
Q ss_pred ccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHH
Q 001855 659 EIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMP 738 (1004)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~ 738 (1004)
++. .-+..++.+.+.++....||+.+++..++..+++. .+.+|+.|+.+++
T Consensus 774 -----~d~-----------------------vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk-sa~vRqqaadlis 824 (1172)
T KOG0213|consen 774 -----EDS-----------------------VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK-SAKVRQQAADLIS 824 (1172)
T ss_pred -----chh-----------------------hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC-ChhHHHHHHHHHH
Confidence 010 12346888899999999999999999999999864 8999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHH
Q 001855 739 ELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQ 817 (1004)
Q Consensus 739 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~ 817 (1004)
.+....+.+. .+..-..+..+ |.+.+ ++.+++++..++.+++.+....|-. +.++ +..++..+.+
T Consensus 825 ~la~Vlktc~---------ee~~m~~lGvv---LyEyl-geeypEvLgsILgAikaI~nvigm~km~pP-i~dllPrltP 890 (1172)
T KOG0213|consen 825 SLAKVLKTCG---------EEKLMGHLGVV---LYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPP-IKDLLPRLTP 890 (1172)
T ss_pred HHHHHHHhcc---------HHHHHHHhhHH---HHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCC-hhhhcccchH
Confidence 9988775331 12121222222 23333 4558999999999999998887753 3333 4566776667
Q ss_pred HHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccch-hhHHHHHHhHhhhhcCCCCH
Q 001855 818 VITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTA 896 (1004)
Q Consensus 818 ~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~ 896 (1004)
+|+..-+ .+..++.++++.++...++-+. -.+-.+.=.|+..+ ++-.-
T Consensus 891 ILknrhe------------------------------KVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK 939 (1172)
T KOG0213|consen 891 ILKNRHE------------------------------KVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKK 939 (1172)
T ss_pred hhhhhHH------------------------------HHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHH
Confidence 7665432 3444566677777766554321 11222222223333 12234
Q ss_pred HHHHHHHHHHHHHHHHhhhh-HH--------------------------h--hhHhHHHHHHhhcCCCChhHHHHHHHHH
Q 001855 897 EERRIAICIFDDVAEQCREA-AL--------------------------K--YYETYLPFLLEACNDENQDVRQAAVYGL 947 (1004)
Q Consensus 897 ~~r~~al~~l~~l~~~~~~~-~~--------------------------~--~~~~l~~~~~~~l~~~~~~vr~~a~~~l 947 (1004)
+.|..+...||.+.+..|++ +. . ..=.++|.++.-.+.++..|++-.+.+|
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 55666666666666665542 10 0 1125788899888999999999999999
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhhh
Q 001855 948 GVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQLF 1001 (1004)
Q Consensus 948 g~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~~ 1001 (1004)
..+.++.++.-..|+-.+.|.|-..|++. +..-|+-|+.++-++....
T Consensus 1020 sf~FeyigemskdYiyav~PlleDAlmDr------D~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYAVTPLLEDALMDR------DLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHhhccc------cHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999876 5677777777777766553
No 16
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-19 Score=188.73 Aligned_cols=512 Identities=15% Similarity=0.137 Sum_probs=333.0
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC----
Q 001855 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR---- 95 (1004)
Q Consensus 21 ~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~---- 95 (1004)
.+++.+.+.++++.|...|..||..|.+++| .|+ |...+++++.. +.+..+|+.|++++|+.|.+. |..
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~ 75 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDD 75 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccC
Confidence 4678999999999999999999999999999 687 56999999976 578999999999999999998 765
Q ss_pred -----CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 001855 96 -----LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1004)
Q Consensus 96 -----l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l 170 (1004)
-.+++++.+.+.++..+.. .+...|.+.-.++..|...++|.+.|+ +.|...+++.+++..+...|+.++..+
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el 153 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL 153 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH
Confidence 2345555555555555554 466777778778888889999989999 999999999999999999999999999
Q ss_pred hhhHh-------hhccccHHHHHHHHHHhhc---C-C--CChHHHHHHHHHHHHHHHh-hcCc-chHhHHHhhHHHHHHH
Q 001855 171 SQYIG-------DTLTPHLKHLHAVFLNCLT---N-S--NNPDVKIAALNAVINFIQC-LTSS-ADRDRFQDLLPLMMRT 235 (1004)
Q Consensus 171 ~~~~~-------~~~~~~~~~l~~~l~~~l~---~-~--~~~~vr~~a~~~l~~~~~~-~~~~-~~~~~~~~~~~~~l~~ 235 (1004)
++... ..+.+....++|++.+.-. + + +..++-.-.++.+-..... ++.. ...+.+..++...+..
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 87521 2234455666666654422 2 1 1223333344433322221 1110 0123334444444443
Q ss_pred HHHHHh----cCChhH---------HHHHHHHHHHHHccchHH--------HH----HhHHHHHHHHHHhhc---CCCc-
Q 001855 236 LTESLN----NGNEAT---------AQEALELLIELAGTEPRF--------LR----RQLVDVVGSMLQIAE---AESL- 286 (1004)
Q Consensus 236 l~~~l~----~~~~~~---------~~~a~~~L~~l~~~~~~~--------~~----~~~~~i~~~l~~~~~---~~~~- 286 (1004)
+...+. +.++++ .++|+..|.++..++.+. +. ..++.+....++... +...
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 322111 123443 456777777777665321 11 123344444433321 1110
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHH-HHhhcCCCC-CccccCCCCC------CccccCCcccchH
Q 001855 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL-MSMLLDIED-DPLWHSAETE------DEDAGESSNYSVG 358 (1004)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~l~~~~~-~~~~~~~~~~------~~d~~~~~~~~~a 358 (1004)
-.+.....+.++...|.. ....++-..|+++-++... +++++-.++ .+.|+.++++ |--++..++.-++
T Consensus 314 lsd~~LYfi~~Fve~cv~---~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaa 390 (970)
T COG5656 314 LSDIELYFIDFFVELCVD---ADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAA 390 (970)
T ss_pred cchHHHHHHHHHHHHHhh---hHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHH
Confidence 112233444444444442 2224455667777766653 455543332 2234433221 1001122233344
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhc-------C-CChhHHHHHHHHHHHHHhhcH--HHHHHhHHH-HHHHHHhhC
Q 001855 359 QECLDRLAIALGGNTIVPVASEQLPAYLA-------A-PEWQKHHAALIALAQIAEGCA--KVMVKNLEQ-VLSMVLNSF 427 (1004)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-------~-~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~-i~~~l~~~l 427 (1004)
..++-.++..-+ +..+..+++++...+. + .+....++|+..++++..-.. ......++. +++++.+.+
T Consensus 391 l~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f 469 (970)
T COG5656 391 LFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF 469 (970)
T ss_pred HHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh
Confidence 445554444443 6667778888877762 1 467888999999999887322 233344444 568888999
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC-CcccccCchHHHHH
Q 001855 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC-TPEILTPYLDGIVS 506 (1004)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~l~~~~~~i~~ 506 (1004)
+++.-..|..||..++.+.+.+++ .....++.....+++++ ++-.|+..|..|+..++.+. ..+.+..+.+..|+
T Consensus 470 ~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tme 545 (970)
T COG5656 470 RSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETME 545 (970)
T ss_pred cCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHH
Confidence 999999999999999999877765 34677888899999999 88899999999999998654 22457889999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHH
Q 001855 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1004)
Q Consensus 507 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 551 (1004)
.|+++-+.-+.++ .-.++..++..+++++.||.++++..|.+
T Consensus 546 kLLsLSn~feiD~---LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 546 KLLSLSNTFEIDP---LSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HHHHhcccccchH---HHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 9999877766544 34566677778888888888888777666
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1.8e-17 Score=174.75 Aligned_cols=687 Identities=16% Similarity=0.210 Sum_probs=425.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcC-chHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------CCc
Q 001855 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQD-PDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFL 92 (1004)
Q Consensus 22 ~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~-p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~-------~~~ 92 (1004)
-.+..+|-...++++.-|+.|...|..=.-.. +.-....++-++.+ +-...=|++-..++.+++.+-+ ++.
T Consensus 363 r~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkI 442 (1172)
T KOG0213|consen 363 RKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKI 442 (1172)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeee
Confidence 35667777778888999999999886433211 11111333333333 4455667776665555554321 000
Q ss_pred ---cc--CCCHHHHHH-----HHHHHHHH--Hh----------hcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHH
Q 001855 93 ---WP--RLSLHTQSS-----LKSMLLQS--IQ----------LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQ 150 (1004)
Q Consensus 93 ---w~--~l~~~~~~~-----i~~~ll~~--l~----------~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~ 150 (1004)
.. .+.++.... |...|... |. +..++.||+..+.+++.++++. ..|.++|+|..
T Consensus 443 LvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLka 518 (1172)
T KOG0213|consen 443 LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKA 518 (1172)
T ss_pred EEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHH
Confidence 00 022222211 11112111 11 1257889999999999999874 67899999999
Q ss_pred hhcCC-ChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH
Q 001855 151 CVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1004)
Q Consensus 151 ~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 229 (1004)
.+.|. +|+.|+.++++...++...+....+++..++.++..++.|. +..||.-+..++..+++.. .+.....|.
T Consensus 519 vc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~itAlalsalaeaa-~Pygie~fD--- 593 (1172)
T KOG0213|consen 519 VCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTITALALSALAEAA-TPYGIEQFD--- 593 (1172)
T ss_pred HhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhHHHHHHHHHHHhc-CCcchHHHH---
Confidence 99887 89999999999999999999988899999999999999998 9999999999999999864 222333344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHH-hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhcc
Q 001855 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR-QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1004)
Q Consensus 230 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 308 (1004)
.+++.|+.-+...-......-++.++.++-.....-.. +..+++-.+..-. ...+++.+...+.++..+|......
T Consensus 594 -sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf--~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 594 -SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF--GSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred -HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHhcccCCC
Confidence 45666665443322223333334444433222222222 2335555554433 4567888888888888888754333
Q ss_pred chhhhcchhhHHHHHHHHHHhh-----------------------cCCCCCccccCCCCCCccccCCcccchHHHHHHHH
Q 001855 309 PGMMRKLPQFINRLFAILMSML-----------------------LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRL 365 (1004)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l-----------------------~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l 365 (1004)
|...+ ..++|.++... .+...++....--+ +--++....++....+++.+
T Consensus 671 ~~y~r------~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~-~lkde~e~yrkm~~etv~ri 743 (1172)
T KOG0213|consen 671 PAYIR------FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVL-DLKDEPEQYRKMVAETVSRI 743 (1172)
T ss_pred HHHHh------hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhh-hhccccHHHHHHHHHHHHHH
Confidence 32221 22333333211 11100000000000 00000112345566667766
Q ss_pred HHhcCCCcchHH----HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHH
Q 001855 366 AIALGGNTIVPV----ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA 441 (1004)
Q Consensus 366 ~~~~~~~~~~~~----l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1004)
...+|..++-.. ++.-+.-.++.+.-... .-+..|+.++..+...+.+|++.++..++..|+++.+.||..|+..
T Consensus 744 ~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadl 822 (1172)
T KOG0213|consen 744 VGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADL 822 (1172)
T ss_pred HhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 666664333322 22222223333222221 3456778888877777789999999999999999999999999999
Q ss_pred HHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHH
Q 001855 442 IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE 521 (1004)
Q Consensus 442 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~ 521 (1004)
++.++..+...--.+.+..+=..|.+.|.. ..+.|--..+.++..++...+...+.|-...+++.|...+++...+|.+
T Consensus 823 is~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqe 901 (1172)
T KOG0213|consen 823 ISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQE 901 (1172)
T ss_pred HHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHH
Confidence 999998775432123444455566888888 8899999999999999988876667888999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhH--hhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHh
Q 001855 522 GALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1004)
Q Consensus 522 ~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1004)
..+..+|.++...++.+. .+....+..+ ..|.. ....+|..+.+++|.+++++|++ +++..|++-.
T Consensus 902 n~IdLvg~IadrgpE~v~aREWMRIcfeLl-elLka----hkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnnL 969 (1172)
T KOG0213|consen 902 NCIDLVGTIADRGPEYVSAREWMRICFELL-ELLKA----HKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNNL 969 (1172)
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHH----HHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhcc
Confidence 999999999987665322 3444444433 23322 23457888999999999999965 3555555411
Q ss_pred cCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceee
Q 001855 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIG 679 (1004)
Q Consensus 600 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1004)
.. +. ...|-...-+++-++.. ..|| .++|.|++-... |+. .
T Consensus 970 kv--qe-Rq~RvcTtvaIaIVaE~----c~pF--tVLPalmneYrt-Pe~-----------------------------n 1010 (1172)
T KOG0213|consen 970 KV--QE-RQNRVCTTVAIAIVAET----CGPF--TVLPALMNEYRT-PEA-----------------------------N 1010 (1172)
T ss_pred hH--HH-HHhchhhhhhhhhhhhh----cCch--hhhHHHHhhccC-chh-----------------------------H
Confidence 10 00 00111111123333333 3443 356666654422 111 1
Q ss_pred eechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q 001855 680 IKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES 759 (1004)
Q Consensus 680 v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 759 (1004)
|.+ .-++.++-+....++.-..|+-.+.+.+...+.+. +..-|+.|..++.++.-. .++....+
T Consensus 1011 VQn-------GVLkalsf~FeyigemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg--------~~g~g~ed 1074 (1172)
T KOG0213|consen 1011 VQN-------GVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG--------VPGTGCED 1074 (1172)
T ss_pred HHH-------hHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC--------CCCcCcHH
Confidence 122 23445555555556556677888888887777764 788899999988888653 23344566
Q ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC
Q 001855 760 YVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1004)
Q Consensus 760 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 801 (1004)
.+..+++.++|.++. +.|.+..+..+++..+-...|+
T Consensus 1075 a~iHLLN~iWpNIle-----~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1075 ALIHLLNLIWPNILE-----TSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HHHHHHHHhhhhhcC-----CChHHHHHHHHHHHHHHHHhch
Confidence 778888888886653 4567777777777766666665
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=1.5e-17 Score=202.10 Aligned_cols=784 Identities=14% Similarity=0.126 Sum_probs=474.4
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchH---------HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCC
Q 001855 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDS---------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDS 90 (1004)
Q Consensus 22 ~~l~~ll~~~~s~--~~~~r~~A~~~L~~~~~~~p~~---------~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~ 90 (1004)
..+..+++.+.++ +.+.|++|...|..+.+.+++. +++.|...|. +.++.+|..|+-.|.++-...
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~e-- 89 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKEE-- 89 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCH--
Confidence 4677888888765 6788999999999888755431 3566777775 457889999887777764331
Q ss_pred CcccCCCHHHH-----HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc------chHHHHHHHhhcCCC---
Q 001855 91 FLWPRLSLHTQ-----SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW------PELLPFMFQCVSSDS--- 156 (1004)
Q Consensus 91 ~~w~~l~~~~~-----~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~------~~ll~~L~~~l~~~~--- 156 (1004)
+.+ ......|++.|.+ .+...|..++.+|..++......+.| ...+|.|..++++++
T Consensus 90 --------~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 90 --------DLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred --------HHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 222 1222356777876 68899999999999998752111122 556888888888763
Q ss_pred hhHHHHHHHHHHHhhhhHhhhcccc-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHH--HhhHHHHH
Q 001855 157 VKLQESAFLIFAQLSQYIGDTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMM 233 (1004)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~l 233 (1004)
..++..+..+|..++...+...... -...+|.+...++++ ++.++..|+.++..++...++ ....+ ...+|.++
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee--~~~aVIeaGaVP~LV 237 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFES--SISKVLDAGAVKQLL 237 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChH--HHHHHHHCCCHHHHH
Confidence 2345556778888876544321111 134677888888887 899999999988887765322 12111 23345554
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCC-------cchHHHHHHHHHHHHHHHh
Q 001855 234 RTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAES-------LEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 234 ~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~-------~~~~vr~~a~~~l~~l~~~ 304 (1004)
+ .+.+ ++..+|..|..+|..++...++.-...+. ..++.++..+..++ .....+++|...+..++..
T Consensus 238 ~----LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 238 K----LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred H----HHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 4 4433 45689999999999999765544332222 33444554443221 2355788999999999873
Q ss_pred hhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCC-c---ch--HHH
Q 001855 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-T---IV--PVA 378 (1004)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~-~---~~--~~l 378 (1004)
. ..++|.+...+....+ . .....+...+..+...+... . .+ ..+
T Consensus 314 ----------~----~~ll~~L~~ll~s~rd-~---------------~~~ada~gALayll~l~d~~~~~~~~i~~~~v 363 (2102)
T PLN03200 314 ----------M----SALILYLGELSESPRS-P---------------APIADTLGALAYALMVFDSSAESTRAFDPTVI 363 (2102)
T ss_pred ----------c----hhhHHHHHHhhcccch-H---------------HHHHHHHhhHHHHHHhcCCchhhhhhcccccc
Confidence 1 3344444433321100 0 00011122233332222111 0 00 123
Q ss_pred HHHHHHhhcCCChhH-HHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001855 379 SEQLPAYLAAPEWQK-HHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1004)
Q Consensus 379 ~~~l~~~l~~~~~~~-r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1004)
.+.+.+++.++++.. .+.+..+|..+..+..- .+ +-...++.++..+...+..+|..++++|..++..-......
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L--~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL--NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH--HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 355666777665443 56666666554433211 11 12356778888898889999999999999998653332211
Q ss_pred hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
-.-...+|.+++.|.+ ++..++..|+++++.+..........-.-...++.|.+++.+++..+++.+..++++++.. .
T Consensus 442 Ii~~ggIp~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~ 519 (2102)
T PLN03200 442 LGGREGVQLLISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-S 519 (2102)
T ss_pred HHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-c
Confidence 1234578999999998 7889999999999999764431111111134678888999999999999999999999863 3
Q ss_pred hhhHhhH--hhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001855 536 EHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1004)
Q Consensus 536 ~~~~~~~--~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 613 (1004)
++....+ ...+|.|++++.+. +...+..+..++..+...-.++.. +.++ .+... .+......+
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~~d~~~I----~~Lv----~LLls---dd~~~~~~a 584 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRTADAATI----SQLT----ALLLG---DLPESKVHV 584 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhccchhHH----HHHH----HHhcC---CChhHHHHH
Confidence 3333333 36788899988652 345667788888887654332222 2233 32221 223456667
Q ss_pred HHHHHHHHhHhccCc-c-c--chhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHH
Q 001855 614 LQAWARLCKCLGQDF-L-P--YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKA 689 (1004)
Q Consensus 614 ~~~l~~l~~~~~~~~-~-~--~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 689 (1004)
+..++.+.......- . . --...++.|.+.+... ....|.
T Consensus 585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-------------------------------------s~~ikk 627 (2102)
T PLN03200 585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-------------------------------------KEETQE 627 (2102)
T ss_pred HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-------------------------------------CHHHHH
Confidence 777777755332210 0 0 0123555666655321 123467
Q ss_pred HHHHHHHHHHHHhccccc-ccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHH
Q 001855 690 TACNMLCCYADELKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQ-LSDF 767 (1004)
Q Consensus 690 ~a~~~l~~l~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 767 (1004)
.|++++..++........ -.....++.++.++.. .+.++++.++.++.++.... ....... +-..
T Consensus 628 ~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss-~~~~v~keAA~AL~nL~~~~------------~~~q~~~~v~~G 694 (2102)
T PLN03200 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTN-NTEAVATQSARALAALSRSI------------KENRKVSYAAED 694 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc-CChHHHHHHHHHHHHHHhCC------------CHHHHHHHHHcC
Confidence 788888888864332211 1124455666666664 47889999999999998632 1222222 2234
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhh
Q 001855 768 IIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIK 847 (1004)
Q Consensus 768 il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~ 847 (1004)
.+|+|+..+... +.++...++.+|..++... +....+.
T Consensus 695 aV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~------e~~~ei~----------------------------------- 732 (2102)
T PLN03200 695 AIKPLIKLAKSS-SIEVAEQAVCALANLLSDP------EVAAEAL----------------------------------- 732 (2102)
T ss_pred CHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCc------hHHHHHH-----------------------------------
Confidence 677777777553 5566666666665554321 1000000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh--HHhh--hHh
Q 001855 848 EENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA--ALKY--YET 923 (1004)
Q Consensus 848 ~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~--~~~~--~~~ 923 (1004)
. ...+|.+.+.+ ++.++..|..|..++..+++..+.. +..+ -.-
T Consensus 733 ---------------------~----------~~~I~~Lv~lL-r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g 780 (2102)
T PLN03200 733 ---------------------A----------EDIILPLTRVL-REGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG 780 (2102)
T ss_pred ---------------------h----------cCcHHHHHHHH-HhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence 0 01334455555 3555777888888888888775532 1122 223
Q ss_pred HHHHHHhhcCCCChhHHHH--HHHHHHHHHhhcc-cch--HHH-----HHHHHHHHHHhhcCCCCCCchhhhhHHHHHHH
Q 001855 924 YLPFLLEACNDENQDVRQA--AVYGLGVCAEFGG-SVV--KPL-----VGEALSRLNVVIRHPNALQPENLMAYDNAVSA 993 (1004)
Q Consensus 924 l~~~~~~~l~~~~~~vr~~--a~~~lg~l~~~~~-~~~--~~~-----~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a 993 (1004)
.+..+++.|+..|.++-.. |.-+|+.+++... ..+ .|| .|.-+..|...+... ++.+.|.|+..
T Consensus 781 ~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~------~p~~~~kai~i 854 (2102)
T PLN03200 781 TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEG------HPLVQDKAIEI 854 (2102)
T ss_pred cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcC------ChHHHHHHHHH
Confidence 5667788888777666665 9999999998532 222 233 256667776666543 67999999999
Q ss_pred HHHHHhhhhc
Q 001855 994 LGKICQLFLH 1003 (1004)
Q Consensus 994 ~~~l~~~~~~ 1003 (1004)
|.|+|+-+|-
T Consensus 855 l~~~~~~~~~ 864 (2102)
T PLN03200 855 LSRLCRDQPV 864 (2102)
T ss_pred HHHHhccChh
Confidence 9999987763
No 19
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=5.2e-19 Score=182.41 Aligned_cols=678 Identities=15% Similarity=0.139 Sum_probs=407.8
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch
Q 001855 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1004)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 263 (1004)
.+...++. .++. ....|..+++.|..=...+. ....|..++|.++..-. +...|...+.++..+.....
T Consensus 169 ~v~rllLk-vKNG-~~~mR~~~lRiLtdkav~fg---~~~vfnkvLp~lm~r~L------eDqerhl~vk~idr~Ly~ld 237 (975)
T COG5181 169 DVYRLLLK-VKNG-GKRMRMEGLRILTDKAVNFG---AAAVFNKVLPMLMSREL------EDQERHLVVKLIDRLLYGLD 237 (975)
T ss_pred hHHHHHhh-cccC-CchhhHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhhh------hhhhhHhHHHHHHHHHHhcc
Confidence 34444443 3565 78899999998877655442 22334455554444322 22345556666666654444
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCC
Q 001855 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1004)
Q Consensus 264 ~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1004)
....||+..|+-..-..+ -+.+...|...-+.+..++... .+...+. .. .++...
T Consensus 238 dl~~pyvhkILvVv~pll--ided~~~r~~g~eii~nL~~~~--------Gl~~~vs-----------~m--rpDi~~-- 292 (975)
T COG5181 238 DLKVPYVHKILVVVGPLL--IDEDLKRRCMGREIILNLVYRC--------GLGFSVS-----------SM--RPDITS-- 292 (975)
T ss_pred cccccceeeEEEEeeccc--cCccHHHhcccHHHHHHHHHHh--------ccceeee-----------ec--cCCccc--
Confidence 444454443322111111 1234445555555566555420 0000000 00 011100
Q ss_pred CCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001855 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1004)
Q Consensus 344 ~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1004)
.+.-.+.....+...++..+| ++.++|++.....+. +|+.|++++.+..+++.-.+-...+|+..++..
T Consensus 293 ------~deYVRnvt~ra~~vva~alg----v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 293 ------KDEYVRNVTGRAVGVVADALG----VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred ------ccHHHHHHHHHHHHHHHHhhC----cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 011134556677788888887 567888888888775 899999999999999998877778999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchH
Q 001855 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1004)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~ 502 (1004)
+..++.|.+..||..++.+++.+++..+|.- ...++.++..+.+..+. ....+-.+-+.|.+.++.-++++..-.+-.
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHH
Confidence 9999999999999999999999999877654 56788888888887766 333444555666677776677776667778
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCccc----------------------
Q 001855 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKS---------------------- 560 (1004)
Q Consensus 503 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~---------------------- 560 (1004)
..+..+...+++++.+.+...+.........-+..-..+.+++.|.+++.+.......
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~ 520 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP 520 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh
Confidence 8999999999999877766655544443333222223455677776666554321111
Q ss_pred -------------chhhhHHHHHHHHHHHhhhChhhhhhhH-HHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHhHhc
Q 001855 561 -------------NRMLRAKSMECISLVGMAVGKDKFRDDA-KQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1004)
Q Consensus 561 -------------~~~l~~~a~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~-l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (1004)
..+.|.....+...+...+|...|..-+ ..+++.++. ++... ..-.-++.||+.+..+++
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~-----~t~~~il~~f~tv~vsl~ 595 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD-----TTVGLILPCFSTVLVSLE 595 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc-----ccccEEEecccceeeehh
Confidence 1122222222222222222222222111 112222222 22211 111234556666666666
Q ss_pred cCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhc--
Q 001855 626 QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK-- 703 (1004)
Q Consensus 626 ~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~-- 703 (1004)
-...||++.++..+++.+.+++. +.|+-|+++.+.++..++
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p-------------------------------------~vR~~aadl~~sl~~vlk~c 638 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPP-------------------------------------DVRIRAADLMGSLAKVLKAC 638 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCc-------------------------------------cHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999976542 123456666666665443
Q ss_pred --ccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCc
Q 001855 704 --EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPD 781 (1004)
Q Consensus 704 --~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 781 (1004)
.....++..+ +...+... .+++--..+.++..+..... -..+++-++.++|.|...+++...
T Consensus 639 ~e~~~l~klg~i---LyE~lge~-ypEvLgsil~Ai~~I~sv~~------------~~~mqpPi~~ilP~ltPILrnkh~ 702 (975)
T COG5181 639 GETKELAKLGNI---LYENLGED-YPEVLGSILKAICSIYSVHR------------FRSMQPPISGILPSLTPILRNKHQ 702 (975)
T ss_pred chHHHHHHHhHH---HHHhcCcc-cHHHHHHHHHHHHHHhhhhc------------ccccCCchhhccccccHhhhhhhH
Confidence 2233344333 33344432 56666666666666665431 111344567778888777765533
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhccCCChHHhhhhhhhhhhH
Q 001855 782 TEICASMLDSLNECIQISGP-LLDEGQVRSIVDEIKQVITASSSRKRE-------RAERAKAEDFDAEESELIKEENEQE 853 (1004)
Q Consensus 782 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~~e~~d~~~~~~~~~~~e~~ 853 (1004)
.+..+.+.-++ .+...++ .+++.....|+-.+.+.|+..-+..+. +....-+.. +-=...+....-.+
T Consensus 703 -Kv~~nti~lvg-~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--dvL~~LlnnLkvqe 778 (975)
T COG5181 703 -KVVANTIALVG-TICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--DVLDILLNNLKVQE 778 (975)
T ss_pred -HHhhhHHHHHH-HHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--HHHHHHHhcchHHH
Confidence 34434444333 4444454 477777777777777766653221110 000000000 00000111122244
Q ss_pred HHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcC
Q 001855 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 933 (1004)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~ 933 (1004)
...|.+..-.++..++.+|.- ..+|.++.-. ..+..++....+.++.+++++.|+....|+..+.|.+-..|.
T Consensus 779 Rq~RvctsvaI~iVae~cgpf------sVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt 851 (975)
T COG5181 779 RQQRVCTSVAISIVAEYCGPF------SVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT 851 (975)
T ss_pred HHhhhhhhhhhhhhHhhcCch------hhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 555666666667777766631 4677777766 577788889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHhhcCCCC
Q 001855 934 DENQDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRHPNA 978 (1004)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~~l~~L~~~l~~~~~ 978 (1004)
|.++.-|+.|...+..++-+++. .--+.+-.++.+|.+-+-.+++
T Consensus 852 DrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sP 897 (975)
T COG5181 852 DRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSP 897 (975)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCc
Confidence 99999999999999999999753 2345677888888888877754
No 20
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.5e-17 Score=171.81 Aligned_cols=632 Identities=15% Similarity=0.184 Sum_probs=376.7
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 23 PFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 23 ~l~~ll~~~~s~--~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
.+++++.++..| |...|+||..++++++. .|..| ..+.+++.+ +.++.+|..+...|...++.+ +...+..
T Consensus 4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek----yne~nl~ 77 (980)
T KOG2021|consen 4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK----YNEANLN 77 (980)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh----hccCCHH
Confidence 467777777665 88999999999999999 78876 777787766 478999999999999999886 5668899
Q ss_pred HHHHHHHHHHHHHhh-----c---chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCh-hHHHHHHHHHHHh
Q 001855 100 TQSSLKSMLLQSIQL-----E---SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQL 170 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~-----~---~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~-~~r~~al~~l~~l 170 (1004)
++..+|..++..++- + ..+.+++.++++++.+...++| ..|+.++..+...+.-+.. .-...-++++-.+
T Consensus 78 elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaI 156 (980)
T KOG2021|consen 78 ELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAI 156 (980)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHHh
Confidence 999999999887652 1 2567999999999999999999 6899999988887754321 1122233333333
Q ss_pred hhhHhh--------h----------cc-ccHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHHhhcCcchHhHHHhh
Q 001855 171 SQYIGD--------T----------LT-PHLKHLHAVFLNCLTNS---NNPDVKIAALNAVINFIQCLTSSADRDRFQDL 228 (1004)
Q Consensus 171 ~~~~~~--------~----------~~-~~~~~l~~~l~~~l~~~---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 228 (1004)
-+++.+ + ++ ..++.+.....+.++.. .++.+-...+.|+++++.++ +...+..
T Consensus 157 dsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWI----dInLIaN- 231 (980)
T KOG2021|consen 157 DSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWI----DINLIAN- 231 (980)
T ss_pred hhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhh----hhhhhhc-
Confidence 332211 0 11 13455655555555432 27788899999999999997 3332221
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHH----------------------------------------
Q 001855 229 LPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR---------------------------------------- 268 (1004)
Q Consensus 229 ~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~---------------------------------------- 268 (1004)
..+++.+...++ -+++|.+|+.|+.+++...-+-+.+
T Consensus 232 -d~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gv 308 (980)
T KOG2021|consen 232 -DYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGV 308 (980)
T ss_pred -hhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcce
Confidence 245555555554 5678888888888777654211110
Q ss_pred -----------------------hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH
Q 001855 269 -----------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI 325 (1004)
Q Consensus 269 -----------------------~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 325 (1004)
.+-.+++++++.+.+ ..+++....+.+|+.....-++.+..-.....++.+++..
T Consensus 309 el~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~--e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illa 386 (980)
T KOG2021|consen 309 ELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNN--EFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLA 386 (980)
T ss_pred eeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHH
Confidence 001122233333321 2233333334444433221111111111122355666666
Q ss_pred HHHhhcCCCCCccccCCCCCCccccCCcccch-HHHHHHHHHHhcCCCcchHHHHHHHHHhhc---CCChhHHHHHHHHH
Q 001855 326 LMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALGGNTIVPVASEQLPAYLA---APEWQKHHAALIAL 401 (1004)
Q Consensus 326 l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~-a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~aal~~l 401 (1004)
.+..+++.+. ..|..+.+.+|+++.....+. ....++.++..- ++-+...+-..+...+. ..+|+.-+.|+..+
T Consensus 387 i~kqicydem-y~nddn~tg~EeEa~f~e~RkkLk~fqdti~~id-psl~l~~Ir~slS~al~ns~e~swqevE~Aiyll 464 (980)
T KOG2021|consen 387 IFKQICYDEM-YFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVID-PSLFLNNIRQSLSAALMNSKEESWQEVELAIYLL 464 (980)
T ss_pred HHHHHhccHH-hhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 6666665421 122222122222222222222 222334444332 23444444444444443 36899999999999
Q ss_pred HHHHhhcHHHHH----------HhHHHHHHHHHh--hCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh--
Q 001855 402 AQIAEGCAKVMV----------KNLEQVLSMVLN--SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG-- 467 (1004)
Q Consensus 402 ~~l~~~~~~~~~----------~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~-- 467 (1004)
-.++++.+.... ..+..+++.++. ...++|+.|+-.-...+.++...+..+ ..+++.++...+.
T Consensus 465 y~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~r 542 (980)
T KOG2021|consen 465 YNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDSR 542 (980)
T ss_pred HHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccch
Confidence 999987654111 122344444443 347889999988888888877766543 3466666666654
Q ss_pred hcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCC------------hhHHHHHHHHHHHHHHHh-
Q 001855 468 AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK------------QMVQEGALTALASVADSS- 534 (1004)
Q Consensus 468 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~------------~~vr~~a~~~l~~l~~~~- 534 (1004)
++.+ ++..||.+|...+.++++..+. .+.||.+.++..+-.+++... ..-+...++++|.++..-
T Consensus 543 glhn-~ne~Vr~RawYLF~RfVKlLkk-qlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n 620 (980)
T KOG2021|consen 543 GLHN-KNENVRLRAWYLFTRFVKLLKK-QLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNN 620 (980)
T ss_pred hccc-cccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCC
Confidence 3455 7889999999999999999884 578999999999988883221 122334566666655321
Q ss_pred --HhhhHhhHhhhhHHHHH-----HHhh-cCcccchhhhH----HHHHHHHHHHhhhChhh-------hhhhHHHHHHHH
Q 001855 535 --QEHFQKYYDAVMPFLKA-----ILVN-ATDKSNRMLRA----KSMECISLVGMAVGKDK-------FRDDAKQVMEVL 595 (1004)
Q Consensus 535 --~~~~~~~~~~i~~~l~~-----~l~~-~~~~~~~~l~~----~a~~~l~~l~~~~~~~~-------~~~~~~~i~~~l 595 (1004)
.+.-..|++.++.++.. .... -.+++..++.. .++.+++.++++..... ......++.+.+
T Consensus 621 ~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvi 700 (980)
T KOG2021|consen 621 SPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVI 700 (980)
T ss_pred CCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHH
Confidence 12223455544432221 1111 01222222221 24566777766543110 011123334444
Q ss_pred HHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCC
Q 001855 596 MSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGD 675 (1004)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1004)
+.... .+...+.+|+++-.++++++..+|.++-||+|+++..+++.... .|.
T Consensus 701 l~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~-------------------kEm-------- 752 (980)
T KOG2021|consen 701 LVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDL-------------------KEM-------- 752 (980)
T ss_pred HHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCH-------------------HHH--------
Confidence 33222 12334678999999999999999999999999999988776421 111
Q ss_pred ceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhc
Q 001855 676 KRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV 718 (1004)
Q Consensus 676 ~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~ 718 (1004)
+.-+..++.+.-.......|.++++++.++
T Consensus 753 -------------vdfl~flsQLihkfk~~~~~ilnqmlppll 782 (980)
T KOG2021|consen 753 -------------VDFLGFLSQLIHKFKTDCYQILNQMLPPLL 782 (980)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223445677776666666777777666544
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=6.8e-17 Score=184.18 Aligned_cols=633 Identities=16% Similarity=0.183 Sum_probs=382.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchH--HHHHhHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHHHHHhhh
Q 001855 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPR--FLRRQLVDVVGSMLQIAEAE-SLEEGTRHLAIEFVITLAEARE 306 (1004)
Q Consensus 230 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~i~~~l~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~ 306 (1004)
..+.+.+.....++++..|++++-.|..++...+. ....+.++|...+...+.+. +...++....+.+.+.+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 35666777777789999999988777777665542 22234455555555555332 22233444444444444331
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCC-CccccCC-cc---cchHHHHHHHHHHhcCCCcchHHHHHH
Q 001855 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE-DEDAGES-SN---YSVGQECLDRLAIALGGNTIVPVASEQ 381 (1004)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~d~~~~-~~---~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1004)
+.-+.++..++..+........--.++.+ .++..-. ++ .-...+-|..|+.-+|. |.++-.
T Consensus 895 ----------~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q----PdLVYK 960 (1702)
T KOG0915|consen 895 ----------SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ----PDLVYK 960 (1702)
T ss_pred ----------hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC----hHHHHH
Confidence 12244555555554432211000000000 0000000 01 11234455566666653 344444
Q ss_pred HHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001855 382 LPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1004)
Q Consensus 382 l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1004)
|+++.++ ..|.-|.+|.+.+|.++....+.+.+|++.++|-+.+.--|+++.||.+.....+.++..-..-. +.|+..
T Consensus 961 FM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y~ne 1039 (1702)
T KOG0915|consen 961 FMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEYLNE 1039 (1702)
T ss_pred HHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHHHHH
Confidence 4555554 67999999999999999999999999999999999999999999999999999998887654444 889999
Q ss_pred hHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHH---HHHHHHhHh-
Q 001855 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL---ASVADSSQE- 536 (1004)
Q Consensus 461 ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l---~~l~~~~~~- 536 (1004)
++..++..+.+ ..++||+++|.||..++.+-+.+.+...++.++..++..+++-...||+++-.+. +.++-..++
T Consensus 1040 Il~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1040 ILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999 8999999999999999999887778889999999999999998888888765544 444333222
Q ss_pred ----hhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhH
Q 001855 537 ----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSY 612 (1004)
Q Consensus 537 ----~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~ 612 (1004)
.-...++.++|++..-- .-....++|.-++..+..++...| ..+.||.+++++.++..... ++ +.+..+
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~g---ims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~-lE--~~vLnY 1191 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEG---IMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSE-LE--PQVLNY 1191 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccC---cccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccc-cc--hHHHHH
Confidence 12357778888776531 112455678888999999999999 57999999999999985542 11 111111
Q ss_pred -HHHHHHHHHhH---hcc---Ccccc---------------hhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccch
Q 001855 613 -MLQAWARLCKC---LGQ---DFLPY---------------MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET 670 (1004)
Q Consensus 613 -~~~~l~~l~~~---~~~---~~~~~---------------l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1004)
++++...=..+ ... .-.|. +..++|.+.+.+..
T Consensus 1192 ls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~------------------------- 1246 (1702)
T KOG0915|consen 1192 LSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG------------------------- 1246 (1702)
T ss_pred HHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-------------------------
Confidence 11110000000 000 11111 12233333333211
Q ss_pred hhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHc
Q 001855 671 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEK 750 (1004)
Q Consensus 671 ~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 750 (1004)
. ..+..|+.+...+..++..++.++.||...++..++..+.+ .++.+|++-+.+++.++...
T Consensus 1247 ------s-----Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S------ 1308 (1702)
T KOG0915|consen 1247 ------S-----VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS------ 1308 (1702)
T ss_pred ------c-----CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC------
Confidence 1 11334677888999999999999999999999999999997 59999999999999999864
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001855 751 GLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA 830 (1004)
Q Consensus 751 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 830 (1004)
.+.+.++++..++..++. +.++...+ ++..+.. +..- .++.+....+.+.+++.-.+.
T Consensus 1309 ------s~dq~qKLie~~l~~~l~--k~es~~si---scatis~-Ian~----s~e~Lkn~asaILPLiFLa~~------ 1366 (1702)
T KOG0915|consen 1309 ------SPDQMQKLIETLLADLLG--KDESLKSI---SCATISN-IANY----SQEMLKNYASAILPLIFLAMH------ 1366 (1702)
T ss_pred ------ChHHHHHHHHHHHHHHhc--cCCCccch---hHHHHHH-HHHh----hHHHHHhhHHHHHHHHHHHHh------
Confidence 355677777666654432 12221122 2222222 1111 223344445555554433221
Q ss_pred HHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchh-hHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHH
Q 001855 831 ERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP-FFDELSSYLTPMWGKDKTAEERRIAICIFDDV 909 (1004)
Q Consensus 831 ~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l 909 (1004)
|+ +.+ ...+... +...++ ..|..-.+ +...++..+......+.++..|..+...+...
T Consensus 1367 -----ee-~Ka-----------~q~Lw~d---vW~e~v-sggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~ 1425 (1702)
T KOG0915|consen 1367 -----EE-EKA-----------NQELWND---VWAELV-SGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVI 1425 (1702)
T ss_pred -----HH-HHH-----------HHHHHHH---HHHHhC-CCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 00 000 1111111 111111 11222223 44444444444443566677787777777777
Q ss_pred HHHhhhhHH-hhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhh
Q 001855 910 AEQCREAAL-KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 973 (1004)
Q Consensus 910 ~~~~~~~~~-~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l 973 (1004)
+........ |++-.+.+.++..+...-.+=++.-..++...+..+...+..-.+.+...-++..
T Consensus 1426 a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~ 1490 (1702)
T KOG0915|consen 1426 AEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEV 1490 (1702)
T ss_pred cccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHH
Confidence 766554443 6788888888888887666655555555555555544433333444444444444
No 22
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.7e-14 Score=153.25 Aligned_cols=603 Identities=17% Similarity=0.233 Sum_probs=373.6
Q ss_pred hHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 21 SAPFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 21 ~~~l~~ll~~~~s~-~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
...++.++..++++ +.+....++++|+..+. .|.+| ..-.++++.+..+++|.++++.|.-.+..+ |+..+++
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~-S~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~----~e~~~~~ 79 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQC-SQQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR----WEECPAN 79 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hHHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh----hccCChh
Confidence 45678888888886 77888999999999998 67766 556667766888999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHhhc--chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCC-h----hHH-HHHHHHHHHhh
Q 001855 100 TQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-V----KLQ-ESAFLIFAQLS 171 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~-~----~~r-~~al~~l~~l~ 171 (1004)
..+.++..++..+... ....|-+.++-.++.++-+..| +.||.-+..+++.++.+. + ..+ ..-+..|..+.
T Consensus 80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p 158 (982)
T KOG2022|consen 80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMP 158 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCc
Confidence 9999999998877642 3455677777778877777777 699998888888876532 2 222 23344554444
Q ss_pred hhHhh-------------hccccHHHHHHHHHHhhcCCC---Ch----HHHHHHHHHHHHHHHhhcCc-chHh-------
Q 001855 172 QYIGD-------------TLTPHLKHLHAVFLNCLTNSN---NP----DVKIAALNAVINFIQCLTSS-ADRD------- 223 (1004)
Q Consensus 172 ~~~~~-------------~~~~~~~~l~~~l~~~l~~~~---~~----~vr~~a~~~l~~~~~~~~~~-~~~~------- 223 (1004)
.+... ++.......++++...++... .. -.+..+++|+..++.+..-+ .+..
T Consensus 159 ~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll 238 (982)
T KOG2022|consen 159 AEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLL 238 (982)
T ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 43221 122233444445555554431 12 45678888888887753211 0000
Q ss_pred -----------------------------------------------HHHhhHHHHHHHHHH------HHhcCC--hhHH
Q 001855 224 -----------------------------------------------RFQDLLPLMMRTLTE------SLNNGN--EATA 248 (1004)
Q Consensus 224 -----------------------------------------------~~~~~~~~~l~~l~~------~l~~~~--~~~~ 248 (1004)
....+++...-.+.+ ...+.| ++..
T Consensus 239 ~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i 318 (982)
T KOG2022|consen 239 DVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEI 318 (982)
T ss_pred HHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 000011111111111 111122 2233
Q ss_pred HHHHHHHHHHHccchHHHHHh---------HHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhh-----hccchh
Q 001855 249 QEALELLIELAGTEPRFLRRQ---------LVDVVGSMLQIAEAES---LEEGTRHLAIEFVITLAEAR-----ERAPGM 311 (1004)
Q Consensus 249 ~~a~~~L~~l~~~~~~~~~~~---------~~~i~~~l~~~~~~~~---~~~~vr~~a~~~l~~l~~~~-----~~~~~~ 311 (1004)
...+.+....++++...+..+ +..++..++...+.+. .++.+...++.+|..+...- +..+..
T Consensus 319 ~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~ 398 (982)
T KOG2022|consen 319 VTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIK 398 (982)
T ss_pred HHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 333344444444443332222 2234444444443332 34566777889999887641 111100
Q ss_pred hhcc-hhhHHHHHHHHHHhhcCCCCCc--cccCCCCCCccccCCccc-chHHHHHHHHHHhcCCCcchHHHHHHHHHhhc
Q 001855 312 MRKL-PQFINRLFAILMSMLLDIEDDP--LWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVPVASEQLPAYLA 387 (1004)
Q Consensus 312 ~~~~-~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~~d~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 387 (1004)
...+ .+...+++..++..+..+.+.. .|..++.| .+..+ +...+++...=..+| +.+...+...+.+++.
T Consensus 399 ~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e-----~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~a 472 (982)
T KOG2022|consen 399 KQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSRE-----QFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALA 472 (982)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHH-----HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhh
Confidence 0011 1444556666666666554321 34433211 22222 334444544444555 6778888888888887
Q ss_pred CCC-----hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001855 388 APE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1004)
Q Consensus 388 ~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 461 (1004)
+.+ |..-++++..+..+++..+......++.++...... ++-.++..-..+...+|.++.+++.+. .|++..
T Consensus 473 a~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~s 550 (982)
T KOG2022|consen 473 AGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPS 550 (982)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCch
Confidence 655 999999999999999998876667777777655443 334488889999999999999998764 689999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHhH-hhh
Q 001855 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQ-EHF 538 (1004)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~--~~vr~~a~~~l~~l~~~~~-~~~ 538 (1004)
+|.+++.+.. ++.-..+...+..+|+.+. +.+.||.++++..+-..+...+ ...|..++.++|.+..... ++.
T Consensus 551 l~~L~~~Lh~---sk~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~ 626 (982)
T KOG2022|consen 551 LPLLFQGLHN---SKESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEI 626 (982)
T ss_pred HHHHHHHhcC---chHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhH
Confidence 9999999965 3445667777999999998 5689999999999988876643 5689999999999988766 456
Q ss_pred HhhHhhhhHHHHHHHhhcCcc----cchhhhHH-HHHHHHHHHhhhC-hh----------h--------hhhhHHHHHHH
Q 001855 539 QKYYDAVMPFLKAILVNATDK----SNRMLRAK-SMECISLVGMAVG-KD----------K--------FRDDAKQVMEV 594 (1004)
Q Consensus 539 ~~~~~~i~~~l~~~l~~~~~~----~~~~l~~~-a~~~l~~l~~~~~-~~----------~--------~~~~~~~i~~~ 594 (1004)
.+|+.+++..+..-++....+ ....+|.. -+.+++.+...+- +. + ......+++++
T Consensus 627 ~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~ 706 (982)
T KOG2022|consen 627 PKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPV 706 (982)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHH
Confidence 679999888888777654211 12223221 2455666655432 00 0 12234555555
Q ss_pred HHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCc-ccchhhhhHHHHHHc
Q 001855 595 LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF-LPYMSVVMPPLLQSA 643 (1004)
Q Consensus 595 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~l~~i~~~ll~~~ 643 (1004)
+-++.+-..+. ..+.+.++..+..=.+..+..| .|+++.+.+.+....
T Consensus 707 ~~kv~s~~~~~-s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 707 FEKVLSMWLGL-SDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL 755 (982)
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence 55533322222 2233444333333344556667 788888888887744
No 23
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.84 E-value=3.1e-13 Score=140.72 Aligned_cols=496 Identities=18% Similarity=0.254 Sum_probs=324.0
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 19 ~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
.|.+-+.++......+++..+++|++-|.+|+. +|+.| ...-+|+.++..|+.+..|..+|.++|..+ |+-++.
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk----Wkllp~ 84 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK----WKLLPE 84 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh----hhhCCc
Confidence 466778899999999999999999999999999 89987 778889988999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhc-ch-------HhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 001855 99 HTQSSLKSMLLQSIQLE-SA-------KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~-~~-------~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l 170 (1004)
+.+..||+-+.+.+... .+ ..+-+.+-..+-.|++.+|| ..||+++|.|++.-+ .+-++.+..+.+|..+
T Consensus 85 ~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklL 162 (1053)
T COG5101 85 GMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLL 162 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHh
Confidence 99999999998877532 22 33455667778889999999 799999999998755 4567888888888888
Q ss_pred hhhHh----h------------hccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHH
Q 001855 171 SQYIG----D------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1004)
Q Consensus 171 ~~~~~----~------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (1004)
.++.- + ++...+++++..+.+.|.-..++.+-.+.+..+..+..+++-. -.| ...++.
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~---yIf---eTnIie 236 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLD---YIF---ETNIIE 236 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchh---HHH---HHHHHH
Confidence 77632 1 2334679999999999887767888889999998888886411 111 113344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHccc--h-------HHHHHh---------------------------------HHH
Q 001855 235 TLTESLNNGNEATAQEALELLIELAGTE--P-------RFLRRQ---------------------------------LVD 272 (1004)
Q Consensus 235 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~--~-------~~~~~~---------------------------------~~~ 272 (1004)
.+.+-+.+ .++.|..++.||.+++... | ..+.-+ +..
T Consensus 237 Lv~~~f~s-~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~ 315 (1053)
T COG5101 237 LVLEHFNS-MPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQK 315 (1053)
T ss_pred HHHHHhcc-CCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHH
Confidence 44333322 5667777777777766432 1 000000 000
Q ss_pred HHHHHH-------HhhcCC------------------CcchHHHHHHHHHHHHHHHhh--h--cc------c--------
Q 001855 273 VVGSML-------QIAEAE------------------SLEEGTRHLAIEFVITLAEAR--E--RA------P-------- 309 (1004)
Q Consensus 273 i~~~l~-------~~~~~~------------------~~~~~vr~~a~~~l~~l~~~~--~--~~------~-------- 309 (1004)
+..++. ..++.+ -.+.++-..|++.|..++..- + +. |
T Consensus 316 LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 316 LAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 000000 011110 012334455666666554320 0 00 1
Q ss_pred -------hhhhcchhhHH--------HHHHHHHHhhcCCCCCccccCCCCCCc-------cccCCcccchHHHHHHHHHH
Q 001855 310 -------GMMRKLPQFIN--------RLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAI 367 (1004)
Q Consensus 310 -------~~~~~~~~~~~--------~l~~~l~~~l~~~~~~~~~~~~~~~~~-------d~~~~~~~~~a~~~l~~l~~ 367 (1004)
.+.. ..|.-. ++.-.++..|..+++ ..-..+++.| |.|....++....+|-.|+.
T Consensus 396 ~~istnpn~~~-~~pLrkhiY~~ilsqLrlvlienMvrPEE--VliVendegEivRefvketDtI~lYksmRevLvyLth 472 (1053)
T COG5101 396 QAISTNPNQDS-TKPLRKHIYIGILSQLRLVLIENMVRPEE--VLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTH 472 (1053)
T ss_pred hhccCCcchhc-ccchHHHHHHHHHHHHHHHHHHcCCCcce--EEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhh
Confidence 0000 001111 111122222222211 0001111110 11122344555566666554
Q ss_pred hcCCCcchHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHH-----hhCCCCChhHHHHHH
Q 001855 368 ALGGNTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVL-----NSFRDPHPRVRWAAI 439 (1004)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~-----~~l~d~~~~vr~~a~ 439 (1004)
..- .+.-..++..+...+.+. +|..-..-++++|+++....+... .++-+++..++ +..+|....|.....
T Consensus 473 L~v-~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIM 551 (1053)
T COG5101 473 LIV-DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIM 551 (1053)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence 332 344455555555556565 467778889999999987776442 34445554444 345666777777777
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcc-------cccCchHHHHHHHHHHh
Q 001855 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-------ILTPYLDGIVSKLLVLL 512 (1004)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-------~l~~~~~~i~~~l~~~l 512 (1004)
..+|++-..+..+. .++..++..+++.+.+ .+..|+.-||..+-.+++.|+.. .-.|+...|+..+-+..
T Consensus 552 yvvGQYpRFLkahw--~FLkTVv~KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT 628 (1053)
T COG5101 552 YVVGQYPRFLKAHW--SFLKTVVKKLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTT 628 (1053)
T ss_pred eeeccchHHHHHHH--HHHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhc
Confidence 88888887777665 6899999999999998 88999999999999999887532 23588888888887777
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHh
Q 001855 513 QNGKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 513 ~~~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
.+-.+.-+...+.+.|.+++..++
T Consensus 629 ~dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 629 GDLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred ccCChHHHhHHHHHHhHHHhccch
Confidence 777777777888888888877653
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.82 E-value=4e-15 Score=181.43 Aligned_cols=714 Identities=16% Similarity=0.174 Sum_probs=413.1
Q ss_pred HHHHHhhc-chHhHHHHHHHHHHHHHhcccCCC----CcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccH
Q 001855 108 LLQSIQLE-SAKSISKKLCDTVSELASNILPEN----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL 182 (1004)
Q Consensus 108 ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~~~----~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 182 (1004)
+++.|.+. .++..|+.+...|..+++..-... .-...+|.|...+.+++..++..++.++..++..-...-.-..
T Consensus 18 Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~ 97 (2102)
T PLN03200 18 CIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLL 97 (2102)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44444431 134455555555555554321100 1245689999999988999999999888888765221111112
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH-hH--HHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR-DR--FQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-~~--~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
...+|.+...|++. +.+.|..|..+|..+...-...... .. -.+.+|.++..+.... ..+..++..++.+|..++
T Consensus 98 ~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gs-k~d~~L~~~Av~AL~nLs 175 (2102)
T PLN03200 98 GGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGN-KQDKVVEGLLTGALRNLC 175 (2102)
T ss_pred cCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCc-hhhHHHHHHHHHHHHHHh
Confidence 55677788888887 8999999999999988642100001 10 1234555555443210 012234455667777777
Q ss_pred ccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001855 260 GTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1004)
Q Consensus 260 ~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1004)
......-...+. ..++.+...+.. .++..+..|..++..++.. .+. ....
T Consensus 176 ~~~en~~~~IIeaGaVp~LV~LLsS--~d~~lQ~eAa~aLa~Lass---~ee-----------~~~a------------- 226 (2102)
T PLN03200 176 GSTDGFWSATLEAGGVDILVKLLSS--GNSDAQANAASLLARLMMA---FES-----------SISK------------- 226 (2102)
T ss_pred cCccchHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHcC---ChH-----------HHHH-------------
Confidence 655433222222 355556666643 4567777777766666542 010 0000
Q ss_pred ccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhH-
Q 001855 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNL- 416 (1004)
Q Consensus 339 ~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l- 416 (1004)
+ . . ...+| .+.+++.+ ++..+|+.|..+|+.++.+..+.-....
T Consensus 227 ----------------------V----I-e---aGaVP----~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~ 272 (2102)
T PLN03200 227 ----------------------V----L-D---AGAVK----QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD 272 (2102)
T ss_pred ----------------------H----H-H---CCCHH----HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 0 0 12233 34445543 5568899999999999987554221111
Q ss_pred HHHHHHHHhhCCCC---------ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHH
Q 001855 417 EQVLSMVLNSFRDP---------HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~---------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~ 487 (1004)
...+|.++..+..+ +...++.|.|+|+.++... ..+++.+.+.+....+..+...+++++..
T Consensus 273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~---------~~ll~~L~~ll~s~rd~~~~ada~gALay 343 (2102)
T PLN03200 273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM---------SALILYLGELSESPRSPAPIADTLGALAY 343 (2102)
T ss_pred CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc---------hhhHHHHHHhhcccchHHHHHHHHhhHHH
Confidence 12345555555433 3456899999999998653 34566666666552345566778899988
Q ss_pred HhhcCCcc--cccCch-HHHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHh--HhhhHhhHhhhhHHHHHHHhhcCcccc
Q 001855 488 FSENCTPE--ILTPYL-DGIVSKLLVLLQNGKQM-VQEGALTALASVADSS--QEHFQKYYDAVMPFLKAILVNATDKSN 561 (1004)
Q Consensus 488 l~~~~~~~--~l~~~~-~~i~~~l~~~l~~~~~~-vr~~a~~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~~ 561 (1004)
+...+... ...-.- ..+.+.|.+++.++++. +++.+..++..+.... ...+ +-....+.|+.++... .
T Consensus 344 ll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L--~~~daik~LV~LL~~~----~ 417 (2102)
T PLN03200 344 ALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL--NHAEAKKVLVGLITMA----T 417 (2102)
T ss_pred HHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH--HhccchhhhhhhhccC----C
Confidence 86654321 111111 24567888888887655 4677777765533221 1111 1134556677777542 2
Q ss_pred hhhhHHHHHHHHHHHhhhChhhhhhh--HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccc-hhhhhHH
Q 001855 562 RMLRAKSMECISLVGMAVGKDKFRDD--AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPY-MSVVMPP 638 (1004)
Q Consensus 562 ~~l~~~a~~~l~~l~~~~~~~~~~~~--~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~ 638 (1004)
..++..+..++..++..-. + .... -...++.|.++... .+...+..+..+++.++......-... -...+|.
T Consensus 418 ~evQ~~Av~aL~~L~~~~~-e-~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKG-G-LWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCH-H-HHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 3577788888888874321 1 1111 11134555554432 223455666677777765322211111 1345677
Q ss_pred HHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccH--HHHHHH
Q 001855 639 LLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPT 716 (1004)
Q Consensus 639 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~--~~~~~~ 716 (1004)
|.+.+.+.. ...+..|+++++.++.. .......+ ..+++.
T Consensus 493 LV~LL~s~~-------------------------------------~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIpp 534 (2102)
T PLN03200 493 LVQLLETGS-------------------------------------QKAKEDSATVLWNLCCH-SEDIRACVESAGAVPA 534 (2102)
T ss_pred HHHHHcCCC-------------------------------------HHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHH
Confidence 777774311 23356788888888752 22222233 135666
Q ss_pred hccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001855 717 LVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (1004)
Q Consensus 717 l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~ 796 (1004)
++.+++.. +..+++.|+.++.+++... +.... +.++..+..+ ++.+...++..+..++
T Consensus 535 LV~LL~sg-d~~~q~~Aa~AL~nLi~~~------------d~~~I--------~~Lv~LLlsd-d~~~~~~aL~vLgnIl 592 (2102)
T PLN03200 535 LLWLLKNG-GPKGQEIAAKTLTKLVRTA------------DAATI--------SQLTALLLGD-LPESKVHVLDVLGHVL 592 (2102)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHHhcc------------chhHH--------HHHHHHhcCC-ChhHHHHHHHHHHHHH
Confidence 66777643 7889999999999887632 22222 4444444433 4556666677776665
Q ss_pred HHhCCC--CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccc
Q 001855 797 QISGPL--LDEG-QVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKA 873 (1004)
Q Consensus 797 ~~~~~~--~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~ 873 (1004)
...... .... .....++.+.+++... ....+..++.++..++....+
T Consensus 593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sg------------------------------s~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 593 SVASLEDLVREGSAANDALRTLIQLLSSS------------------------------KEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred hhcchhHHHHHhhhccccHHHHHHHHcCC------------------------------CHHHHHHHHHHHHHHhcCChH
Confidence 543221 0000 0011233333333221 123555678888888876655
Q ss_pred cchh-hHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-HHhhhH-hHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 001855 874 AFLP-FFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYE-TYLPFLLEACNDENQDVRQAAVYGLGVC 950 (1004)
Q Consensus 874 ~~~~-~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~-~l~~~~~~~l~~~~~~vr~~a~~~lg~l 950 (1004)
.... .....+|.++..+ ++.+...+..+..+++.++....+. ...+.. -.+|.+++.|++.+..++..|+.+|+.+
T Consensus 643 ~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 643 LCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721 (2102)
T ss_pred HHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 4322 2334788888888 4677778888999999998754332 122233 3788899999999999999999999999
Q ss_pred HhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhhhhc
Q 001855 951 AEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 951 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
+........=.-...++.|.++|... +...|+||+.++.+++...|.
T Consensus 722 l~~~e~~~ei~~~~~I~~Lv~lLr~G------~~~~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 722 LSDPEVAAEALAEDIILPLTRVLREG------TLEGKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HcCchHHHHHHhcCcHHHHHHHHHhC------ChHHHHHHHHHHHHHHhCCCh
Confidence 98764221111246688899998764 568999999999999988774
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.82 E-value=2.1e-14 Score=148.96 Aligned_cols=689 Identities=15% Similarity=0.197 Sum_probs=402.6
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC--CCccc-
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD--SFLWP- 94 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~-~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~--~~~w~- 94 (1004)
+.-.+..+|-...+++..-|..+...|..=.- --|......++-++.+ +-...=|++-..++.+.+..-+ ..-+.
T Consensus 166 ~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 166 DERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred chHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 44567777888888889999999888864222 1222222333333333 4445556766665555544321 00000
Q ss_pred ---------CCCHHH------HHHHHHHHHHH--Hh----------hcchHhHHHHHHHHHHHHHhcccCCCCcchHHHH
Q 001855 95 ---------RLSLHT------QSSLKSMLLQS--IQ----------LESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1004)
Q Consensus 95 ---------~l~~~~------~~~i~~~ll~~--l~----------~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~ 147 (1004)
.+.++. ++.|. .|... |+ ...++.||+..+.+.+.++.+. ..++++|+
T Consensus 246 kILvVv~pllided~~~r~~g~eii~-nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpf 320 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIIL-NLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPF 320 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHH-HHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHH
Confidence 011211 11121 12211 11 1257889999999999999874 56899999
Q ss_pred HHHhhcCC-ChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHH
Q 001855 148 MFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ 226 (1004)
Q Consensus 148 L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 226 (1004)
|-..+.+. +|+.|+.++++...+++..+....+++..++..+..++.|. +..||..+..+++.+++.. .+.....
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~-~~~vRi~tA~alS~lae~~-~Pygie~-- 396 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR-SRFVRIDTANALSYLAELV-GPYGIEQ-- 396 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc-ceeeeehhHhHHHHHHHhc-CCcchHH--
Confidence 99999876 89999999999999999999888889999999999999998 8999999999999998864 2223333
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc-chHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhh
Q 001855 227 DLLPLMMRTLTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR 305 (1004)
Q Consensus 227 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 305 (1004)
+..++..|++-.+.........-++..+.++-. .|++..-+..+.+..++..++. .+++.+...+.+...+.+..
T Consensus 397 --fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~s--pdeemkk~~l~v~~~C~~v~ 472 (975)
T COG5181 397 --FDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKS--PDEEMKKDLLVVERICDKVG 472 (975)
T ss_pred --HHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCC--chhhcchhHHHHHHHHhccC
Confidence 334556666544332222222222222222211 2344444455677777766643 34555444444443333321
Q ss_pred hccchhhhcchhhHHHHHHHHHHhhcCC---CCCccccC-------------CCCC-----CccccCC-cccchHHHHHH
Q 001855 306 ERAPGMMRKLPQFINRLFAILMSMLLDI---EDDPLWHS-------------AETE-----DEDAGES-SNYSVGQECLD 363 (1004)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~-------------~~~~-----~~d~~~~-~~~~~a~~~l~ 363 (1004)
...|. -+...+.|.++...-.. .+.+.+.. +..- +.-.++. ..++....+..
T Consensus 473 ~~tp~------~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vs 546 (975)
T COG5181 473 TDTPW------KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVS 546 (975)
T ss_pred CCCHH------HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHH
Confidence 11121 12244444444321100 00000000 0000 0000011 12233333444
Q ss_pred HHHHhcCCCcchH----HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001855 364 RLAIALGGNTIVP----VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1004)
Q Consensus 364 ~l~~~~~~~~~~~----~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1004)
++...+|...+-. .++..+...++.++-.+. --+-+++.+.....-...+|++.+++.++..|+++.|.||..|+
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aa 625 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAA 625 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHH
Confidence 4443333222111 112211112211110000 00112232222222234588999999999999999999999999
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhH
Q 001855 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMV 519 (1004)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~v 519 (1004)
...+.++..+...--.+.+..+=..+.+.+.. ..+.|--..+.|+..+....+-..+.|-...|+|.+...+.+...++
T Consensus 626 dl~~sl~~vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv 704 (975)
T COG5181 626 DLMGSLAKVLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKV 704 (975)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHH
Confidence 99999888775322134556666677888988 88999999999999998877767788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhH--hhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001855 520 QEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1004)
Q Consensus 520 r~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1004)
....+..+|.++...++.+. .+....+..+- .+.. ...+.|..|.+++|.+++++|++ +++..|++
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd-~Lks----~nKeiRR~A~~tfG~Is~aiGPq-------dvL~~Lln 772 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRICFELVD-SLKS----WNKEIRRNATETFGCISRAIGPQ-------DVLDILLN 772 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HHHH----hhHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHh
Confidence 99999999999987665322 34444444332 2322 23457888999999999999965 45555554
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCce
Q 001855 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1004)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1004)
-... + +...|-...-+++-++..+| || .++|.++.-... |+..
T Consensus 773 nLkv--q-eRq~RvctsvaI~iVae~cg----pf--sVlP~lm~dY~T-Pe~n--------------------------- 815 (975)
T COG5181 773 NLKV--Q-ERQQRVCTSVAISIVAEYCG----PF--SVLPTLMSDYET-PEAN--------------------------- 815 (975)
T ss_pred cchH--H-HHHhhhhhhhhhhhhHhhcC----ch--hhHHHHHhcccC-chhH---------------------------
Confidence 1110 0 01111111123344444443 33 345555543321 2111
Q ss_pred eeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCC
Q 001855 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRN 757 (1004)
Q Consensus 678 ~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 757 (1004)
|. ..-++++.-+....++.-..|+-.+.+.+...+.+. ++.-|+.|...+.++.-.+ ++...
T Consensus 816 --VQ-------nGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc--------~gtg~ 877 (975)
T COG5181 816 --VQ-------NGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNC--------PGTGD 877 (975)
T ss_pred --HH-------HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCC--------CCccc
Confidence 11 123445666666666667778888888888888864 8888999999888887543 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC
Q 001855 758 ESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1004)
Q Consensus 758 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 801 (1004)
.+..-.+++.++|.++ ++.|.+...+.+++..+-...|+
T Consensus 878 eda~IHLlNllwpNIl-----e~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 878 EDAAIHLLNLLWPNIL-----EPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHHHhhhhcc-----CCCcHHHHHHHHHHHHHHHHhcc
Confidence 5566677777777654 34566777777777666666655
No 26
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.77 E-value=7.7e-14 Score=152.58 Aligned_cols=542 Identities=14% Similarity=0.133 Sum_probs=297.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC-----C
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-----L 96 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~-----l 96 (1004)
.....+...+|+++..++.||..|+++++ +++ |...|..+..+ ..+-.+|..|.+.+|+.|+++ |.+ +
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~----W~~~~~~~i 78 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH----WREENGNSI 78 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH----hhhhcccCC
Confidence 34445677889999999999999999999 566 56888888877 578999999999999999999 753 5
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh
Q 001855 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1004)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 176 (1004)
.++....||..++..+.+ .+..+.-+.+.+++.||+.++| ..||.++|.|...+++.+...-.+.+.++..+.+...+
T Consensus 79 ~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 79 LPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 566666999999999987 5777777899999999999999 79999999999999998877777888888888877543
Q ss_pred h------ccccHHHHHHHHHHhhcCC-CChHHHH-----------HHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHH
Q 001855 177 T------LTPHLKHLHAVFLNCLTNS-NNPDVKI-----------AALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTE 238 (1004)
Q Consensus 177 ~------~~~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 238 (1004)
. +....+.+.+++.+.+... ..+..+. .+++.+..+... .-...++.+.++++.++..+..
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~-~~qdi~eFfEd~l~~~m~~F~k 235 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL-GFQDIPEFFEDNLDKFMEHFCK 235 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHH
Confidence 2 2222333333333332211 1112111 233333333221 1112345566777777777666
Q ss_pred HHhcCChhHHH-------------HHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcC---CCcchHHHHHHHHHHHHHH
Q 001855 239 SLNNGNEATAQ-------------EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA---ESLEEGTRHLAIEFVITLA 302 (1004)
Q Consensus 239 ~l~~~~~~~~~-------------~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~vr~~a~~~l~~l~ 302 (1004)
.+....+..+. ..++.+.-+...+++.+.+++-..++.++..++. +...+.+...++..+....
T Consensus 236 lls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~ 315 (947)
T COG5657 236 LLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVI 315 (947)
T ss_pred HHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhh
Confidence 66533333332 3556666666778888887777777666665532 1122334455555555555
Q ss_pred Hh--hhccchhhhcchhhHHHHHHHHHHhh--cCCCCCccccCCCCC---C--ccccCCcccchHHHHHHHHHHhcCCCc
Q 001855 303 EA--RERAPGMMRKLPQFINRLFAILMSML--LDIEDDPLWHSAETE---D--EDAGESSNYSVGQECLDRLAIALGGNT 373 (1004)
Q Consensus 303 ~~--~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~~~~~~---~--~d~~~~~~~~~a~~~l~~l~~~~~~~~ 373 (1004)
+. ++..+.......+.+.+++..++... ...+|-+.|..+..+ + ..+-+...+..+...+..+-..++ +-
T Consensus 316 k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~-~i 394 (947)
T COG5657 316 KYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFG-RI 394 (947)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHh-hH
Confidence 42 11111111111223344444443221 122334455543321 0 001122234455566665555555 55
Q ss_pred chHHHHHHHHHhhcCCC---hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCC----CChhHHH-HHHHHHHHh
Q 001855 374 IVPVASEQLPAYLAAPE---WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD----PHPRVRW-AAINAIGQL 445 (1004)
Q Consensus 374 ~~~~l~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d----~~~~vr~-~a~~~l~~l 445 (1004)
+.+++...+.+....++ -..+.-++.++..+....-..+-....-.-..+...+-+ .+.+++. .+...+...
T Consensus 395 ~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r 474 (947)
T COG5657 395 AVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFR 474 (947)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheech
Confidence 66667777776666662 122222333332222111111112222222222222222 2333322 222222211
Q ss_pred hhhhchh--HHhhhhhhhHHHHHhhcCC-CCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCC-hhHHH
Q 001855 446 STDLGPD--LQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQE 521 (1004)
Q Consensus 446 ~~~~~~~--~~~~~~~~ll~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~-~~vr~ 521 (1004)
....... ..+-+..+.....+....| ..--.++.+....+....-.-. ....-+++++-.+.+.+..+. ...|+
T Consensus 475 ~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~--~~~~~lenl~~lvl~~~as~~~~~e~~ 552 (947)
T COG5657 475 NQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC--SKIGLLENLILLVLSLMASPSSLEERE 552 (947)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHHHHHhcCCcchhHHHH
Confidence 1111111 0000111111111221112 0012334444443333322111 233556666666666666554 46788
Q ss_pred HHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcC-cccchhhhHHHHHHHHHHH
Q 001855 522 GALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-DKSNRMLRAKSMECISLVG 576 (1004)
Q Consensus 522 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~l~~~a~~~l~~l~ 576 (1004)
..+.+++.+....++.+.|....+++.+.+++.... ++....+-...++.++.++
T Consensus 553 ~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~ 608 (947)
T COG5657 553 FLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALV 608 (947)
T ss_pred HHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 899999999999999999988999999988875522 2222223333455555554
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=7.6e-15 Score=155.30 Aligned_cols=439 Identities=18% Similarity=0.205 Sum_probs=336.2
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhccc
Q 001855 57 LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNIL 136 (1004)
Q Consensus 57 ~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~ 136 (1004)
++..+++.+ +.+++.+|+....+|..+.... .....+.+...+.+.+.. ....-|..++..++.+.+...
T Consensus 97 ~~~~~~~~~-~tps~~~q~~~~~~l~~~~~~~--------~~~~~~~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 97 IIEILLEEL-DTPSKSVQRAVSTCLPPLVVLS--------KGLSGEYVLELLLELLTS-TKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHhhhHHHHh--------hccCHHHHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcCcH
Confidence 344455543 3677889999899998876432 223344556667777774 678888888888888876432
Q ss_pred CC-CCcchHHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001855 137 PE-NGWPELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1004)
Q Consensus 137 ~~-~~~~~ll~~L~~~l~~~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 214 (1004)
-. ..-..++..+...+.+.+ ...|++++.++...+...+..+.|++..++|.++....|. ...||.+|..+...+..
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMR 245 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 21 122346777777777664 4566688999999999999889999999999999999887 99999999999999988
Q ss_pred hhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHH
Q 001855 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1004)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a 294 (1004)
.+ ....+..++|..+..+.. ..+.....+++.++.++...+..+...++.+++.+.+.+. |..+++|.++
T Consensus 246 ~~----~~~aVK~llpsll~~l~~----~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~--DT~~evr~a~ 315 (569)
T KOG1242|consen 246 CL----SAYAVKLLLPSLLGSLLE----AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW--DTKPEVRKAG 315 (569)
T ss_pred hc----CcchhhHhhhhhHHHHHH----HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc--cCCHHHHHHH
Confidence 87 344556666666666554 2678889999999999999999999999999999999884 4589999999
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHH-----hc
Q 001855 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI-----AL 369 (1004)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~-----~~ 369 (1004)
.+++..+++.. -.+.+..++|.++..+.++... ..++++.+.. ..
T Consensus 316 ~~~l~~~~svi---------dN~dI~~~ip~Lld~l~dp~~~---------------------~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 316 IETLLKFGSVI---------DNPDIQKIIPTLLDALADPSCY---------------------TPECLDSLGATTFVAEV 365 (569)
T ss_pred HHHHHHHHHhh---------ccHHHHHHHHHHHHHhcCcccc---------------------hHHHHHhhcceeeeeee
Confidence 99999998731 1245889999999888765411 1224443332 12
Q ss_pred CCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc--HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001855 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC--AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1004)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~--~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1004)
. ...+..++|.+...+...+...+..+...++.++.-. +..+.++++.++|.+-..+.|..|.+|..+.++|+.+.+
T Consensus 366 ~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 366 D-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred c-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 1 2456778899988888877777788888899888765 557889999999999999999999999999999999998
Q ss_pred hhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHH
Q 001855 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALT 525 (1004)
Q Consensus 448 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~--~~~vr~~a~~ 525 (1004)
.++. .+++...|.+.+.+.+.....-+..+...+...+...+. .++..+++.++...... .+.++.....
T Consensus 445 ~~g~----~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v----~~~~~~~~~~~a~~~~~~~~~~~~dg~~~ 516 (569)
T KOG1242|consen 445 RLGE----VSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV----EKVEDILPEILANASSVLIDERIRDGVIW 516 (569)
T ss_pred HHHh----hcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc----hHHHHHHHHHHHHHhhccchhhhccCeee
Confidence 8874 345999999999887744455577888888888877763 45566666666655443 3558888888
Q ss_pred HHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001855 526 ALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1004)
Q Consensus 526 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1004)
.+..+-...+..+.+|+..+++.+.+.+..
T Consensus 517 ~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 517 LFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred hhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 888888888888999999999999998764
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4e-13 Score=154.04 Aligned_cols=646 Identities=15% Similarity=0.146 Sum_probs=397.7
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc
Q 001855 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1004)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 262 (1004)
..+...+...+.++ ++..|.+++--|..++.++.. ........+.+...+.+.+.++|+-.+..|.+-++-+-+..
T Consensus 817 ~~~~~~l~~~~~s~-nph~R~A~~VWLLs~vq~l~~---~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg 892 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSP-NPHERQAGCVWLLSLVQYLGQ---QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG 892 (1702)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhcc---CchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC
Confidence 44556666677777 999999998888888888742 23334456677788888888877767766666665443333
Q ss_pred hHHHH-HhHHHHHHHHHHhhcCC----CcchHH-------------HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001855 263 PRFLR-RQLVDVVGSMLQIAEAE----SLEEGT-------------RHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1004)
Q Consensus 263 ~~~~~-~~~~~i~~~l~~~~~~~----~~~~~v-------------r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1004)
...+. ..+..+++.+..- +.+ +.+.++ +.....=+.+++..- . - +.++-
T Consensus 893 d~~~k~~LV~sL~~tl~~G-kr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-------~-q----PdLVY 959 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTGG-KRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-------G-Q----PDLVY 959 (1702)
T ss_pred CchhHHHHHHHHHHHHhcc-ccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-------C-C----hHHHH
Confidence 22222 2334444444321 000 000000 111111122222210 0 0 11222
Q ss_pred HHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCC--CcchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 001855 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALA 402 (1004)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~ 402 (1004)
.+++.-.. .. -|+.+.-|.-.++.++...+. ++.++.++|.+...--||+.+++.+-....+
T Consensus 960 KFM~LAnh---~A-------------~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~ 1023 (1702)
T KOG0915|consen 960 KFMQLANH---NA-------------TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWN 1023 (1702)
T ss_pred HHHHHhhh---hc-------------hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHH
Confidence 22222111 11 233344444455555554431 3567778888888888999999999999999
Q ss_pred HHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHH-
Q 001855 403 QIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA- 481 (1004)
Q Consensus 403 ~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a- 481 (1004)
.++.........|+..|+.-++..+.+..|+||.++|.++..+...-+.+...+.++.++..++..+.| =...||.+|
T Consensus 1024 ~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD-IKEsVR~aa~ 1102 (1702)
T KOG0915|consen 1024 ALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD-IKESVREAAD 1102 (1702)
T ss_pred HhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999988888889999999999999999999999999999999998766554467788899999988888 556677654
Q ss_pred --HHHHHHHhhcCCcc----cccCchHHHHHHHHHH-hhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHh
Q 001855 482 --ASAVLNFSENCTPE----ILTPYLDGIVSKLLVL-LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1004)
Q Consensus 482 --~~~l~~l~~~~~~~----~l~~~~~~i~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1004)
+.+++.++-..... .-...+..++|.|+.- +-+.-..+|..++..+..++...|..+.||++.++|.+...+.
T Consensus 1103 ~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1103 KAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 66666666443211 1124456666666541 1244578999999999999999999999999999999998764
Q ss_pred hcCcccch--hhh-----HHHH--------------HHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001855 555 NATDKSNR--MLR-----AKSM--------------ECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1004)
Q Consensus 555 ~~~~~~~~--~l~-----~~a~--------------~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 613 (1004)
...+.--. .+| ..++ ++++.+...+.. ..+.++++-+.++....+... .|..+
T Consensus 1183 ~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~----~vLeelip~l~el~R~sVgl~--Tkvg~ 1256 (1702)
T KOG0915|consen 1183 ELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI----SVLEELIPRLTELVRGSVGLG--TKVGC 1256 (1702)
T ss_pred ccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH----HHHHHHHHHHHHHHhccCCCC--cchhH
Confidence 32110000 001 0111 112222111111 124556666666544443322 35566
Q ss_pred HHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHH
Q 001855 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1004)
Q Consensus 614 ~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~ 693 (1004)
..++..++..+|.++.||...++..++..+.. .+ ...+..-..
T Consensus 1257 A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RN------------------------------------esv~kafAs 1299 (1702)
T KOG0915|consen 1257 ASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RN------------------------------------ESVRKAFAS 1299 (1702)
T ss_pred HHHHHHHHHHhccccCcchhHHHHHHhhcccc-cc------------------------------------HHHHHHHHH
Confidence 67788899999999999999999999887731 00 112333444
Q ss_pred HHHHHHHHhc-ccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Q 001855 694 MLCCYADELK-EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPAL 772 (1004)
Q Consensus 694 ~l~~l~~~~~-~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 772 (1004)
+.|-+++... +.+..+++.++..+.. . .+..++.++.++.++.... .+.++.....|+|.+
T Consensus 1300 AmG~L~k~Ss~dq~qKLie~~l~~~l~---k--~es~~siscatis~Ian~s-------------~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1300 AMGYLAKFSSPDQMQKLIETLLADLLG---K--DESLKSISCATISNIANYS-------------QEMLKNYASAILPLI 1361 (1702)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhc---c--CCCccchhHHHHHHHHHhh-------------HHHHHhhHHHHHHHH
Confidence 5666666543 3465555554444332 1 3344466666666654433 556778888899987
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhh
Q 001855 773 VEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQ 852 (1004)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~ 852 (1004)
+-...++ +.+ ....+ .++.....+. +.+.++-+... .|+..++... .+.
T Consensus 1362 FLa~~ee-~Ka-~q~Lw---~dvW~e~vsg-gagtvrl~~~e---iLn~iceni~----------------------nn~ 1410 (1702)
T KOG0915|consen 1362 FLAMHEE-EKA-NQELW---NDVWAELVSG-GAGTVRLYLLE---ILNLICENIT----------------------NNE 1410 (1702)
T ss_pred HHHHhHH-HHH-HHHHH---HHHHHHhCCC-CcchhhhhHHH---HHHHHHHHhc----------------------cch
Confidence 7655443 221 22233 3344433331 11222212222 2222222111 124
Q ss_pred HHHHHHHHHHHHHHHHHHccccch-hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhh
Q 001855 853 EEEVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEA 931 (1004)
Q Consensus 853 ~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 931 (1004)
.|.++..++..+..++........ |++-.+.+.++..+ .++.++-+...+.++...+..+...+..-++.++.+....
T Consensus 1411 ~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L-~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e 1489 (1702)
T KOG0915|consen 1411 SWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTL-NGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEE 1489 (1702)
T ss_pred HHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHh-hccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHH
Confidence 588888999999999888877765 88888999888888 5788888999999999888888887776666666666665
Q ss_pred cCCCChhHHHHHHHHHHHHHhhcc
Q 001855 932 CNDENQDVRQAAVYGLGVCAEFGG 955 (1004)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1004)
.......-+..+.-+.|.......
T Consensus 1490 ~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1490 VSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHhHHHHHHHhhhHHHHhhhh
Confidence 555555555556556666665554
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.1e-14 Score=148.06 Aligned_cols=525 Identities=15% Similarity=0.146 Sum_probs=332.4
Q ss_pred chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhc
Q 001855 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT 194 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 194 (1004)
+...+|.....+...+...... ..-..++|..-+.+++. +...|++.+...+.+..+... ..+....++..+...+.
T Consensus 29 ~~~~v~~~ml~a~~~~~~~~~~-~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~-~d~~~~~~~~~~~~~~~ 106 (569)
T KOG1242|consen 29 RRIDVRGNMLEAGEAAINQHGD-QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI-VDPRPISIIEILLEELD 106 (569)
T ss_pred cchhhHHhHHHHHHHHHHhhhH-HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc-cCcchhHHHHHHHHhcC
Confidence 4445555544444433322111 23345667777766644 566777776666666655332 12345667777887777
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHH
Q 001855 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVV 274 (1004)
Q Consensus 195 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~ 274 (1004)
-+ +..+|.+...|+..+....+.. ... .+...+.+.+...+...|..+...+..++..++..-... ..++
T Consensus 107 tp-s~~~q~~~~~~l~~~~~~~~~~-~~~-------~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-~~~l 176 (569)
T KOG1242|consen 107 TP-SKSVQRAVSTCLPPLVVLSKGL-SGE-------YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-FGFL 176 (569)
T ss_pred CC-cHHHHHHHHHHhhhHHHHhhcc-CHH-------HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh-hhHH
Confidence 77 9999999999998887754321 121 344445555555677778888888887776664322111 1344
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcc
Q 001855 275 GSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1004)
Q Consensus 275 ~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~ 354 (1004)
..+.....++ ....-|+.+.-.....+.+ ......||+-+++|.++....+. ....
T Consensus 177 ~~l~~ai~dk-~~~~~re~~~~a~~~~~~~------Lg~~~EPyiv~~lp~il~~~~d~-----------------~~~V 232 (569)
T KOG1242|consen 177 DNLSKAIIDK-KSALNREAALLAFEAAQGN------LGPPFEPYIVPILPSILTNFGDK-----------------INKV 232 (569)
T ss_pred HHHHHHhccc-chhhcHHHHHHHHHHHHHh------cCCCCCchHHhhHHHHHHHhhcc-----------------chhh
Confidence 4444444332 1222233233333333332 11245688899999988776543 2225
Q ss_pred cchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhH
Q 001855 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1004)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1004)
+.++..+...+...+. ..-+..++|.+...+....|+.+.+++..+|.++...+..+...+++++|.+...|.|.++.|
T Consensus 233 r~Aa~~a~kai~~~~~-~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ev 311 (569)
T KOG1242|consen 233 REAAVEAAKAIMRCLS-AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEV 311 (569)
T ss_pred hHHHHHHHHHHHHhcC-cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHH
Confidence 6677777777766664 233444555554455555999999999999999999999898999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhc-CCcccccCchHHHHHHHHHHhh
Q 001855 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN-CTPEILTPYLDGIVSKLLVLLQ 513 (1004)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~l~~~~~~i~~~l~~~l~ 513 (1004)
|.++..++-+++..... +-+..++|.+++++.+ ++..+.. ++..+... +-...-.|-+.-+++.|...+.
T Consensus 312 r~a~~~~l~~~~svidN----~dI~~~ip~Lld~l~d-p~~~~~e----~~~~L~~ttFV~~V~~psLalmvpiL~R~l~ 382 (569)
T KOG1242|consen 312 RKAGIETLLKFGSVIDN----PDIQKIIPTLLDALAD-PSCYTPE----CLDSLGATTFVAEVDAPSLALMVPILKRGLA 382 (569)
T ss_pred HHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHhcC-cccchHH----HHHhhcceeeeeeecchhHHHHHHHHHHHHh
Confidence 99999999999987764 3478899999999999 5533332 23333221 1112234677888888989999
Q ss_pred cCChhHHHHHHHHHHHHHHHh--HhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHH
Q 001855 514 NGKQMVQEGALTALASVADSS--QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1004)
Q Consensus 514 ~~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i 591 (1004)
.++...+..+...+++++... ...+.||++.++|.+...+.+. ..++|..+..+++.+.+.+|...| +..
T Consensus 383 eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~----~PEvR~vaarAL~~l~e~~g~~~f----~d~ 454 (569)
T KOG1242|consen 383 ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA----VPEVRAVAARALGALLERLGEVSF----DDL 454 (569)
T ss_pred hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHhhcc----ccc
Confidence 999999999999999999998 5678899999999999988653 455777788899999999986666 333
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCC-CccccCCCCCcccccCCCcccch
Q 001855 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP-DVTITSADSDNEIEDSDDDSMET 670 (1004)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 670 (1004)
++.+...... +....-+.. +...++..++..-..++..+++.++......- +...+ +.
T Consensus 455 ~p~l~e~~~~--~k~~~~~~g---~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~------------dg---- 513 (569)
T KOG1242|consen 455 IPELSETLTS--EKSLVDRSG---AAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIR------------DG---- 513 (569)
T ss_pred ccHHHHhhcc--chhhhhhHH---HhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhc------------cC----
Confidence 3433332110 001111222 23344444555455566777777776664321 10000 00
Q ss_pred hhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHh
Q 001855 671 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSA 736 (1004)
Q Consensus 671 ~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~ 736 (1004)
. ++++.-+-...+..+.||+.++++.+++.+.+. ++..+..+..+
T Consensus 514 ------~--------------~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~-de~~~~~~~~~ 558 (569)
T KOG1242|consen 514 ------V--------------IWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN-DEKGRDTALEA 558 (569)
T ss_pred ------e--------------eehhhccchhhhHHhHHHHHHHHHHHHHHhhhc-CCccccchhhh
Confidence 0 012222333345678999999999998887743 66666655543
No 30
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.5e-09 Score=123.23 Aligned_cols=748 Identities=14% Similarity=0.129 Sum_probs=365.0
Q ss_pred HHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcc
Q 001855 57 LTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135 (1004)
Q Consensus 57 ~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~ 135 (1004)
+...+...+.. +.|..+++.+.-+|..++...+-.-|. ....+..+...+.-.+ + ..+.+|+.+.+++..+...-
T Consensus 94 ~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~~~il~~~~-h-~~pkvRk~a~~~i~~VL~~p 169 (1176)
T KOG1248|consen 94 TLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTELFGILAFAA-H-KKPKVRKAAQRGIAAVLKGP 169 (1176)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHHHHHHHHHh-c-CchHHHHHHHHHHHHHHcCC
Confidence 34555555543 788999999999999999988777898 3445555544443333 3 57889999988888877620
Q ss_pred --cCCCCcchHH---HHHHHhhc------------------------------------------CCChhHHHHHHHHHH
Q 001855 136 --LPENGWPELL---PFMFQCVS------------------------------------------SDSVKLQESAFLIFA 168 (1004)
Q Consensus 136 --~~~~~~~~ll---~~L~~~l~------------------------------------------~~~~~~r~~al~~l~ 168 (1004)
.|....|-.. .+.++.+. ..+..++..+++++.
T Consensus 170 ~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~ 249 (1176)
T KOG1248|consen 170 PFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLH 249 (1176)
T ss_pred CCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 1111222211 11122221 112222333333333
Q ss_pred HhhhhHhhhccc-cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhH
Q 001855 169 QLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEAT 247 (1004)
Q Consensus 169 ~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 247 (1004)
.+....++.+.. ....++..+.+.--+.++..+-..-++++......+. ..+.+.....+|.++..++.++.+..++.
T Consensus 250 ~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la-~~q~~~~~~~~~~~~~~~~t~~~s~~~e~ 328 (1176)
T KOG1248|consen 250 SLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILA-TLQEEKALQALPRLFSLFFTILESLIEEL 328 (1176)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHH-HhCHHHHHHhhhhhhhHHHHHHhcccHHH
Confidence 333322221111 0111112221111111122222222333322222210 01233333446677777777777778888
Q ss_pred HHHHHHHHHHHHccchHHHHHhHHHHHHH-HHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHH
Q 001855 248 AQEALELLIELAGTEPRFLRRQLVDVVGS-MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1004)
Q Consensus 248 ~~~a~~~L~~l~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1004)
...+.+++..+...... +.+.+... +...++.+ ...+-..+++.+..+.+. . .+...+++.+.+..+
T Consensus 329 ~q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~k--f~~~~~~ilqi~s~~fek---~---G~~s~~~l~~~L~~l 396 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVT----VIDALCSKQLHSLLDYK--FHAVWRFILQILSALFEK---C---GELSGPELTKTLEGL 396 (1176)
T ss_pred HHHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHH---h---hhhcCHHHHHHHHHH
Confidence 88888888888876665 22223332 22222211 233445566666666653 1 012234444444443
Q ss_pred HHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 001855 327 MSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE 406 (1004)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~ 406 (1004)
..+ ...+ +........++++.-...+||+.++. ++|.=. . .+.....|-=-+-.|..-+.
T Consensus 397 ~~l----r~~~-------------d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl-~-~~s~~~~RsWLLPvLR~~i~ 456 (1176)
T KOG1248|consen 397 CDL----RASP-------------DFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL-H-AESLSFTRSWLLPVLRDYII 456 (1176)
T ss_pred HHh----hcCC-------------CCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc-c-ccccccchhHhHHHHHHhhc
Confidence 221 1110 11111234456666556666443322 222111 0 01100011000111111111
Q ss_pred hcHHHHHHhHHHHHHHHHh------hCCCC-C-h-hHHHHHHHHH---HHhhhhhchhHHhhhhhhhHHHHHhhcCCCCC
Q 001855 407 GCAKVMVKNLEQVLSMVLN------SFRDP-H-P-RVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN 474 (1004)
Q Consensus 407 ~~~~~~~~~l~~i~~~l~~------~l~d~-~-~-~vr~~a~~~l---~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 474 (1004)
+.+ +.-+.+.++|.... .+... + . ..+......+ -.||+. |-+. ..-+..+.+.+...+.. .
T Consensus 457 ~A~--La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-P~Dl-~~sF~~la~~l~~al~~--~ 530 (1176)
T KOG1248|consen 457 GAS--LAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-PVDL-AESFTDLAPILGAALLK--R 530 (1176)
T ss_pred cCc--HHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-CccH-HHHHHHHHHHHHHHHhc--c
Confidence 111 11122223332222 12222 1 1 1222222222 233332 2233 34477788888888876 5
Q ss_pred hhHHHHHHHHHHHHhhcCC--------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH-hhhHhhHhhh
Q 001855 475 PRVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-EHFQKYYDAV 545 (1004)
Q Consensus 475 ~~v~~~a~~~l~~l~~~~~--------~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i 545 (1004)
+..|...|.+|..+++... .+.+..|..+.++.++.........-+ .++.+......... ..|..-...+
T Consensus 531 ~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv 609 (1176)
T KOG1248|consen 531 PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDV 609 (1176)
T ss_pred hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHH
Confidence 6999999999999998751 244567788888888887766554433 33333333222222 1122111222
Q ss_pred hHHHHHHHhhcCccc----chhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH
Q 001855 546 MPFLKAILVNATDKS----NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1004)
Q Consensus 546 ~~~l~~~l~~~~~~~----~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 621 (1004)
...+...++...... ......+.++.+..++.....+....+. .+.+...+ .++..+.......+..++
T Consensus 610 ~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~------~~~~~vQkK~yrlL~~l~ 682 (1176)
T KOG1248|consen 610 VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFEN------SSSTKVQKKAYRLLEELS 682 (1176)
T ss_pred HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhc------cccHHHHHHHHHHHHHHh
Confidence 222333222211111 1111222334343343333322222222 22222111 112334455556666665
Q ss_pred hHhccCcc----cchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHH
Q 001855 622 KCLGQDFL----PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCC 697 (1004)
Q Consensus 622 ~~~~~~~~----~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~ 697 (1004)
.. .... ..+..+...|.+.++..+ -..+..++.+|..
T Consensus 683 ~~--~s~~~~~~q~i~~I~n~L~ds~qs~~-------------------------------------~~~~~~rl~~L~~ 723 (1176)
T KOG1248|consen 683 SS--PSGEGLVEQRIDDIFNSLLDSFQSSS-------------------------------------SPAQASRLKCLKR 723 (1176)
T ss_pred cC--CchhhHHHHHHHHHHHHHHHHHhccc-------------------------------------hHHHHHHHHHHHH
Confidence 54 2222 233334444444432211 1224567889999
Q ss_pred HHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 001855 698 YADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALH 777 (1004)
Q Consensus 698 l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 777 (1004)
+.+.++..+..++...++.++=... ..+..-|+.|+.+|..+.... ...+.| +++ ....++.+++.+...+.
T Consensus 724 L~~~~~~e~~~~i~k~I~EvIL~~K-e~n~~aR~~Af~lL~~i~~i~-~~~d~g----~e~--~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 724 LLKLLSAEHCDLIPKLIPEVILSLK-EVNVKARRNAFALLVFIGAIQ-SSLDDG----NEP--ASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc-cccHHHHhhHHHHHHHHHHHH-hhhccc----ccc--hHHHHHHHHHHHHhhhc
Confidence 9999887777777777766555555 458899999999988887411 111222 122 12233444444444333
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHH
Q 001855 778 KEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVF 857 (1004)
Q Consensus 778 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~ 857 (1004)
.+.- .+...-+-++..++...+..++.+
T Consensus 796 gd~~-~~~as~Ivai~~il~e~~~~ld~~--------------------------------------------------- 823 (1176)
T KOG1248|consen 796 GDST-RVVASDIVAITHILQEFKNILDDE--------------------------------------------------- 823 (1176)
T ss_pred ccHH-HHHHHHHHHHHHHHHHHhccccHH---------------------------------------------------
Confidence 3211 111111222222222222211111
Q ss_pred HHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-HHhhhHhHHHHHHhhcCCCC
Q 001855 858 DQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEACNDEN 936 (1004)
Q Consensus 858 ~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~~~~~l~~~~ 936 (1004)
++..++..+..++ .+++..++..|++.+..++..++.. +.++.++++|.++..+++..
T Consensus 824 --------------------~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 824 --------------------TLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK 882 (1176)
T ss_pred --------------------HHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh
Confidence 1223333444444 4777889999999999999888765 57799999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhhcC
Q 001855 937 QDVRQAAVYGLGVCAEFGG-SVVKPLVGEALSRLNVVIRH 975 (1004)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~-~~~~~~~~~~l~~L~~~l~~ 975 (1004)
..+|...-..+-.+++..+ ..+.+|+|....-++..+.+
T Consensus 883 ~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK 922 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRK 922 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHH
Confidence 9999999999999999887 46778888777777666653
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2.8e-12 Score=132.62 Aligned_cols=412 Identities=16% Similarity=0.166 Sum_probs=291.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHH-HHHHHHhcCChhHHHHHHHHHHHHHccchHHHH
Q 001855 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1004)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 267 (1004)
+...+.|. --+-|++|..-+..++..+-...+... +..+++ ...+...+++...|..++-.+...+-..+..-.
T Consensus 5 i~r~ltdK-lYekRKaaalelEk~Vk~l~~~~~~~~----i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 5 IARGLTDK-LYEKRKAAALELEKLVKDLVNNNDYDQ----IRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHccCcHHH----HHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH
Confidence 44566775 778888888888888876533323333 334444 333444455656666666555554333333334
Q ss_pred HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCc
Q 001855 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1004)
Q Consensus 268 ~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 347 (1004)
+|+..+++..+... .|.+..+|..|++.++.+++..+ .....+...++..+.....+.+.
T Consensus 80 ~Y~~~iv~Pv~~cf--~D~d~~vRyyACEsLYNiaKv~k------~~v~~~Fn~iFdvL~klsaDsd~------------ 139 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCF--SDQDSQVRYYACESLYNIAKVAK------GEVLVYFNEIFDVLCKLSADSDQ------------ 139 (675)
T ss_pred HHHHHhhHHHHHhc--cCccceeeeHhHHHHHHHHHHhc------cCcccchHHHHHHHHHHhcCCcc------------
Confidence 47888888887776 45678899999999999998521 23456778888888777665422
Q ss_pred cccCCcccchHHHHHHHHHHhcCC----CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001855 348 DAGESSNYSVGQECLDRLAIALGG----NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1004)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1004)
..+.+.+.++++.+.... .--++.++|.+.+.+...++..|..-+.++..+-...+-.+-.|++.+++.+
T Consensus 140 ------~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGL 213 (675)
T KOG0212|consen 140 ------NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGL 213 (675)
T ss_pred ------ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHH
Confidence 223456677776654321 2346789999999999999999999999999988777777889999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHH
Q 001855 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1004)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~ 503 (1004)
++.|+|+++.||..+-.+++.+..........-...+.++.+...+.+ +++.++..|...+..++...++. +.+|+..
T Consensus 214 f~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~-~l~~~s~ 291 (675)
T KOG0212|consen 214 FNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRD-LLLYLSG 291 (675)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcc-hhhhhhh
Confidence 999999999999999999999988776543122568899999999999 99999999999999999988855 6799999
Q ss_pred HHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHhHhhhH---hhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhh
Q 001855 504 IVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQ---KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1004)
Q Consensus 504 i~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~ 579 (1004)
++..+++++.+... .+++.+...-+.+...++.... --+..++..+.+.+.+ +..+-|..+++.+..+-...
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~----~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD----DREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHhhC
Confidence 99999999988776 4777777666666655553322 1345777777777754 33456777888888888888
Q ss_pred ChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcc
Q 001855 580 GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 644 (1004)
Q Consensus 580 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 644 (1004)
| ..+..+...+...++.... +.++.+....+..++.+|.. .-.+.+-+.+..|++...
T Consensus 368 p-~ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~lla~i~~s---~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 368 P-GQLLVHNDSIFLTLLKTLS---DRSDEVVLLALSLLASICSS---SNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred c-chhhhhccHHHHHHHHhhc---CchhHHHHHHHHHHHHHhcC---cccccHHHHHHHHHHHHh
Confidence 7 4566777888888887443 23445555556666666543 333344555555666653
No 32
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.7e-08 Score=111.07 Aligned_cols=490 Identities=14% Similarity=0.168 Sum_probs=286.5
Q ss_pred HHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhcccC
Q 001855 61 LAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP 137 (1004)
Q Consensus 61 L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~ 137 (1004)
+.+++.. ..++..|..|-..|++.=+. | .....+++.+.++ .+-.||.+++--+.......|+
T Consensus 6 l~~~~~~T~d~d~~~R~~AE~~L~q~~K~----------p----gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~ 71 (1010)
T KOG1991|consen 6 LLQIFRATIDSDAKERKAAEQQLNQLEKQ----------P----GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWS 71 (1010)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcC----------C----cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCC
Confidence 4444432 56799999999999886432 1 1224567777654 4556788888877777666566
Q ss_pred CCCcc------------hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHH
Q 001855 138 ENGWP------------ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAA 205 (1004)
Q Consensus 138 ~~~~~------------~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (1004)
.+.-| -+...++..+-......|..-..++..|... ++...++.+++.+...|+++ +...-..|
T Consensus 72 ~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~---D~p~~Wp~l~d~i~~~Lqs~-~~~~vy~a 147 (1010)
T KOG1991|consen 72 SHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKA---DYPEQWPGLLDKIKNLLQSQ-DANHVYGA 147 (1010)
T ss_pred ccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhc---CCcccchhHHHHHHHHhcCc-chhhHHHH
Confidence 43111 1233344444334444554444555555543 23347899999999999997 87888899
Q ss_pred HHHHHHHHHhhc--Ccc----hHhHHHhhHHHHHHHHHHHHhcCChh---HHHHHHHHHHHHHcc-chHHHH--HhHHHH
Q 001855 206 LNAVINFIQCLT--SSA----DRDRFQDLLPLMMRTLTESLNNGNEA---TAQEALELLIELAGT-EPRFLR--RQLVDV 273 (1004)
Q Consensus 206 ~~~l~~~~~~~~--~~~----~~~~~~~~~~~~l~~l~~~l~~~~~~---~~~~a~~~L~~l~~~-~~~~~~--~~~~~i 273 (1004)
+-|+..++...+ ..+ -...+..++|.+++.....+..++.. ..+..++++..++.. .|..+. ..+...
T Consensus 148 Ll~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W 227 (1010)
T KOG1991|consen 148 LLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSW 227 (1010)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHH
Confidence 999999998764 111 23445677888888887777665443 334445544444322 122221 224455
Q ss_pred HHHHHHhhcCC------CcchH---------HHHHHHHHHHHHHHhhhccchh---hhc-----chhhHHHHHHHHHHhh
Q 001855 274 VGSMLQIAEAE------SLEEG---------TRHLAIEFVITLAEARERAPGM---MRK-----LPQFINRLFAILMSML 330 (1004)
Q Consensus 274 ~~~l~~~~~~~------~~~~~---------vr~~a~~~l~~l~~~~~~~~~~---~~~-----~~~~~~~l~~~l~~~l 330 (1004)
++.++.+++.+ +.+++ .+.=|+-.+..+.+........ .+. ..++...++..+++.+
T Consensus 228 ~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l 307 (1010)
T KOG1991|consen 228 MELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKIL 307 (1010)
T ss_pred HHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655432 12222 3455666777776642100000 111 1234445555555544
Q ss_pred cCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhc----------CC---Ch------
Q 001855 331 LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA----------AP---EW------ 391 (1004)
Q Consensus 331 ~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----------~~---~~------ 391 (1004)
..... ..|. .-+.-..++..+......+.++..+-|+++-.+. +. -|
T Consensus 308 ~~~~~-~~yl-------------s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~E 373 (1010)
T KOG1991|consen 308 EQWRQ-QLYL-------------SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYE 373 (1010)
T ss_pred HHHHh-cccC-------------CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHH
Confidence 32221 2222 1123334444444444334455555555544332 11 12
Q ss_pred -------------hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC--------CCChhHHHHHHHHHHHhhhhhc
Q 001855 392 -------------QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--------DPHPRVRWAAINAIGQLSTDLG 450 (1004)
Q Consensus 392 -------------~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~~~ 450 (1004)
.-+.||...+-.++..-++ ..++.+++++...+. ..+++-...|+..+|.++..+.
T Consensus 374 YiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k---e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~ 450 (1010)
T KOG1991|consen 374 YIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK---ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILL 450 (1010)
T ss_pred HHHhcCchhcccCCCcHHHHHHHHHHHHhcch---hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHc
Confidence 1335666666666554422 334444444444333 3477888899999999997663
Q ss_pred hh--HHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHh-hcCCcccccCchHHHHHHHHHHhh-cCChhHHHHHHHH
Q 001855 451 PD--LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS-ENCTPEILTPYLDGIVSKLLVLLQ-NGKQMVQEGALTA 526 (1004)
Q Consensus 451 ~~--~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~-~~~~~~~l~~~~~~i~~~l~~~l~-~~~~~vr~~a~~~ 526 (1004)
.. +....-.-+.+.++-.+++ +.-..|..||+.++.++ ..++. ...+.++++...+++. +...-||..|..+
T Consensus 451 K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalA 526 (1010)
T KOG1991|consen 451 KKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALA 526 (1010)
T ss_pred cCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHH
Confidence 22 1011222345556666777 77889999999999998 45542 2566778888888887 6667799999999
Q ss_pred HHHHHHHhH---hhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001855 527 LASVADSSQ---EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1004)
Q Consensus 527 l~~l~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1004)
+..++.... ..+.++.+.+|..++++.+.-+.+. + -.++..+....+ +.+.|++.++++.+..
T Consensus 527 Lq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~---L----t~vme~iV~~fs-eElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 527 LQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD---L----TNVMEKIVCKFS-EELSPFAVELCQNLAE 592 (1010)
T ss_pred HHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH---H----HHHHHHHHHHHH-HhhchhHHHHHHHHHH
Confidence 999998766 3478888888888888765532221 2 345666666666 6677877777665544
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.3e-12 Score=135.07 Aligned_cols=393 Identities=15% Similarity=0.163 Sum_probs=279.4
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHH----HhhcCCChhHHHHHHHHHHHhhhhHhhhccccHH
Q 001855 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMF----QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1004)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~----~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1004)
+..+|.+ .-..-|++++.-+.++++....++....+-..+. ....+++.+.|.+++..+..+.-..+.+-.++..
T Consensus 5 i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 5 IARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 4556665 5677899999999999987666554444333333 3445677788889999999887777766666899
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch
Q 001855 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1004)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 263 (1004)
.+++.++.++.|+ +..||..|+..+++++.... ..+..+++.+...++....+.+..++. +.+.+..+.....
T Consensus 84 ~iv~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k-----~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIV 156 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQ-DSQVRYYACESLYNIAKVAK-----GEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIV 156 (675)
T ss_pred HhhHHHHHhccCc-cceeeeHhHHHHHHHHHHhc-----cCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhc
Confidence 9999999999998 99999999999999998753 233455667777888777776665554 4555555543221
Q ss_pred HH--HHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccC
Q 001855 264 RF--LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1004)
Q Consensus 264 ~~--~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1004)
.. -.-+++.+++.+-..+. ..++..|...++.+..+-. .|. ..+-.|++.+++-+++++.+..+
T Consensus 157 te~~~tFsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds----~P~--~~m~~yl~~~ldGLf~~LsD~s~------ 222 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDS----VPD--LEMISYLPSLLDGLFNMLSDSSD------ 222 (675)
T ss_pred cccccccCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhc----CCc--HHHHhcchHHHHHHHHHhcCCcH------
Confidence 10 02246677777766553 3466777776665555443 342 23446888999999998876432
Q ss_pred CCCCCccccCCcccchHHHHHHHHHHhcCCCc---chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001855 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNT---IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1004)
Q Consensus 342 ~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 418 (1004)
+.+.....++..+-..+..++ -.+.+.+.+...+.+++...+..|+.++..++.-.+...-.++..
T Consensus 223 -----------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~ 291 (675)
T KOG0212|consen 223 -----------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSG 291 (675)
T ss_pred -----------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 133344444443332221111 134456666778889999999999999999999888878889999
Q ss_pred HHHHHHhhCCCCCh-hHHHHHHHHHHHhhhhhchhHHh--hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcc
Q 001855 419 VLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQN--QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1004)
Q Consensus 419 i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~--~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 495 (1004)
++..+++++.++.+ .++..+...-+.+..-+...... --+..++..+.+.+.+ ...+.|.++...+..+....+.+
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcch
Confidence 99999999988876 47776665554444444322211 1345899999999999 88899999999999999999865
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 496 ~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
+.-+..++.+.|++.+.+++..|-..+++.++.++....
T Consensus 371 -l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 371 -LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred -hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 668999999999999999999998888998888886654
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.60 E-value=8.6e-12 Score=144.62 Aligned_cols=481 Identities=20% Similarity=0.263 Sum_probs=326.0
Q ss_pred CCCh-HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcc
Q 001855 18 GPDS-APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1004)
Q Consensus 18 ~~d~-~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~r~~a~~~L~~~i~~~~~~~w 93 (1004)
|.|. ..+.+++..+.++|...|+-+.-.+..+...+|+.. .....-+. +++|+.+|.+|...+.+..
T Consensus 37 G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------- 107 (526)
T PF01602_consen 37 GYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR-------- 107 (526)
T ss_dssp T---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH---------
T ss_pred CCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--------
Confidence 4443 356667777788899999999999999888677643 23333332 3788999999999998864
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch-HHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 001855 94 PRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1004)
Q Consensus 94 ~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~-ll~~L~~~l~~~~~~~r~~al~~l~~l~~ 172 (1004)
+++..+.+...+.+.+.+ +++.||+.++.++..+.+. .| +..+. +++.+.+++.++++.++.+|+.++..+ +
T Consensus 108 ---~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~-~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 108 ---TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRK-DP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp ---SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHH-CH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred ---ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhcc-CH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 467777888888888887 7899999999999999986 34 35455 799999999999999999999999988 3
Q ss_pred hHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHH
Q 001855 173 YIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEAL 252 (1004)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~ 252 (1004)
..++.....++.+++.+.+.+... ++-++..+++++..+...- ...... ..+++.+...+++.++.++..++
T Consensus 181 ~~~~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~-----~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~ 252 (526)
T PF01602_consen 181 CNDDSYKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPME-----PEDADK--NRIIEPLLNLLQSSSPSVVYEAI 252 (526)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSS-----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCC-----hhhhhH--HHHHHHHHHHhhccccHHHHHHH
Confidence 222222245677778887777787 8888888888887655431 111100 23455555555566788888888
Q ss_pred HHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcC
Q 001855 253 ELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 332 (1004)
Q Consensus 253 ~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (1004)
.++..+..... ....+++.+...+. +.+..+|..+++.+..++.. .+ +.+......++ .+..
T Consensus 253 ~~i~~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~---~~-------~~v~~~~~~~~-~l~~ 314 (526)
T PF01602_consen 253 RLIIKLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQS---NP-------PAVFNQSLILF-FLLY 314 (526)
T ss_dssp HHHHHHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCH---CH-------HHHGTHHHHHH-HHHC
T ss_pred HHHHHhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHHHHhhcc---cc-------hhhhhhhhhhh-eecC
Confidence 88887655333 44566666767764 45788999999999998874 21 11111111111 1111
Q ss_pred CCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHH
Q 001855 333 IEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKV 411 (1004)
Q Consensus 333 ~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~ 411 (1004)
. + +.+.+..+.+++..++. +.-+..+++.+...+. ..+...|..++..++.++...+
T Consensus 315 ~-~---------------d~~Ir~~~l~lL~~l~~----~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~-- 372 (526)
T PF01602_consen 315 D-D---------------DPSIRKKALDLLYKLAN----ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP-- 372 (526)
T ss_dssp S-S---------------SHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG--
T ss_pred C-C---------------ChhHHHHHHHHHhhccc----ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC--
Confidence 1 1 22345556666666654 3345556777777774 4477899999999999987654
Q ss_pred HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhc
Q 001855 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1004)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 491 (1004)
+..+..++.+++.+......+...+...+..+....+. ....++..+++.+.+.+++.++..++|.++.+.+.
T Consensus 373 --~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~-----~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 373 --PDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE-----LREKILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp --SSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT-----THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred --chHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh-----hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 34455667777777767777888887777777755332 23445666677666556788999999999999877
Q ss_pred CCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHH
Q 001855 492 CTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1004)
Q Consensus 492 ~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~ 571 (1004)
... .. ..+.++..+...+...+..+|..++.++..+....+.. ...+.+.+.+.+.... ++.+.++|.+|.+.
T Consensus 446 ~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~--~~~~~i~~~~~~~~~~--~s~~~evr~Ra~~y 518 (526)
T PF01602_consen 446 IEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN--EVQNEILQFLLSLATE--DSSDPEVRDRAREY 518 (526)
T ss_dssp HTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST--THHHHHHHHHHCHHHH--S-SSHHHHHHHHHH
T ss_pred ccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch--hhHHHHHHHHHHHhcc--CCCCHHHHHHHHHH
Confidence 763 22 56777888888887778889999999998888765521 1123555555554431 23456789999888
Q ss_pred HHHHH
Q 001855 572 ISLVG 576 (1004)
Q Consensus 572 l~~l~ 576 (1004)
+..+-
T Consensus 519 ~~ll~ 523 (526)
T PF01602_consen 519 LRLLN 523 (526)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77653
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.60 E-value=1.8e-11 Score=141.95 Aligned_cols=510 Identities=17% Similarity=0.228 Sum_probs=332.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 22 ~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
+++...++... .+...|..+-+.|-.+... ...+-..+.+++. .+++...|+++-+.+......+ ++
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~-G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~---------~~ 75 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMML-GYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED---------PE 75 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHT-T---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS---------HH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHc-CCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc---------hh
Confidence 44555555554 4666777777776554431 1111122334432 3789999999999999886553 55
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1004)
..-.+.+.+.+-|.+ +++.+|..+..+++.+... ...+.+++.+.+++.++++.+|..|+.++..+....++.+.
T Consensus 76 ~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 76 LLILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence 555667777778876 7899999998889888743 35688999999999999999999999999999998666433
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
.. +++.+.+.+.|+ ++.|+..|+.++..+ .. ....+..+++.+.+.+...+...++..+..+++++..+.
T Consensus 151 ~~---~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~-----~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 DE---LIPKLKQLLSDK-DPSVVSAALSLLSEI-KC-----NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp GG---HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HC-----THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HH---HHHHHhhhccCC-cchhHHHHHHHHHHH-cc-----CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 21 688888888887 899999999999888 22 223333667788888887778889999999999999887
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001855 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1004)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1004)
...+..-.. ..+++.+...+. +.+..+...+..++..+... .+.+..+++.+...+...
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~~-----------~~~~~~~~~~L~~lL~s~------ 279 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSPS-----------PELLQKAINPLIKLLSSS------ 279 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSSS-----------HHHHHHHHHHHHHHHTSS------
T ss_pred cCChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhcc-----------hHHHHhhHHHHHHHhhcc------
Confidence 766554421 334444444442 34677777777777655431 225677888887777632
Q ss_pred cCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001855 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1004)
Q Consensus 340 ~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1004)
+...+..+...+..++...+ ..+. .....+.-...+++..+|..++..+..++.. .....+
T Consensus 280 -----------~~nvr~~~L~~L~~l~~~~~-~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~I 340 (526)
T PF01602_consen 280 -----------DPNVRYIALDSLSQLAQSNP-PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEI 340 (526)
T ss_dssp -----------SHHHHHHHHHHHHHHCCHCH-HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHH
T ss_pred -----------cchhehhHHHHHHHhhcccc-hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhH
Confidence 11234456666666654431 1122 1111222233478899999999999988864 345567
Q ss_pred HHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCccccc
Q 001855 420 LSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1004)
Q Consensus 420 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~ 498 (1004)
++.+.+.+.+. ++.+|..+...++.++...++. ....++.+++.+.. ....+...+...+..++...+ +
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~-----~~~~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~-~--- 410 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD-----AEWYVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNP-E--- 410 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-----HHHHHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHST-T---
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCch-----HHHHHHHHHHhhhh-ccccccchHHHHHHHHhhcCh-h---
Confidence 77777777444 7779999999999999887544 34556666666665 556778888888888887654 2
Q ss_pred CchHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHh
Q 001855 499 PYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1004)
Q Consensus 499 ~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~ 577 (1004)
....++..+...+.+ ..+.++..++.++|..+..... .. ....++..+.+.+.. +...+|..++.++..+..
T Consensus 411 -~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~----~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 411 -LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIE----ESPEVKLQILTALAKLFK 483 (526)
T ss_dssp -THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHh
Confidence 234567777777765 4567788888888887766654 01 344445555554432 345678888888888876
Q ss_pred hhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHH
Q 001855 578 AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA 618 (1004)
Q Consensus 578 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~ 618 (1004)
..+..... +.+++.+.+..... +.+..+++.+...+.
T Consensus 484 ~~~~~~~~---~~i~~~~~~~~~~~-s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 484 RNPENEVQ---NEILQFLLSLATED-SSDPEVRDRAREYLR 520 (526)
T ss_dssp HSCSTTHH---HHHHHHHHCHHHHS--SSHHHHHHHHHHHH
T ss_pred hCCchhhH---HHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 65532222 24555555532200 123346666554443
No 36
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.9e-11 Score=127.85 Aligned_cols=444 Identities=17% Similarity=0.218 Sum_probs=282.4
Q ss_pred HHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh--cch
Q 001855 40 SEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL--ESA 117 (1004)
Q Consensus 40 ~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~--~~~ 117 (1004)
.+|..+|++|++ .++.| ...-+++....+.....+|+..++++++.. +..+++.....+|+.++..++. +..
T Consensus 2 ~~A~~~L~~FQ~-S~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQK-SNDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHP 75 (559)
T ss_pred chHhHHHHHhCC-ChHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCC
Confidence 578899999999 56655 677888877778899999999999999987 8899998888999977776653 133
Q ss_pred HhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh---------------hccccH
Q 001855 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD---------------TLTPHL 182 (1004)
Q Consensus 118 ~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~---------------~~~~~~ 182 (1004)
+.++.+++.+++.++-+. | .|.+-++.+.+.+.+..+. ...-+.+|..+.++..+ ++....
T Consensus 76 ~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~ 151 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV 151 (559)
T ss_pred chHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH
Confidence 489999999999999864 3 8988777777777665554 33556667777665321 122344
Q ss_pred HHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh-------------------
Q 001855 183 KHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN------------------- 241 (1004)
Q Consensus 183 ~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~------------------- 241 (1004)
..++..+..++++. ++..+-..+++|++++.....- ..+.+....| ++..+++.++
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~--~~d~v~a~~p-Li~l~F~sl~~~~lhe~At~cic~ll~~~ 228 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVF--PPDQVLASFP-LITLAFRSLSDDELHEEATECICALLYCS 228 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccC--CHHHHHhhhH-HHHHHHHHcccchhhHHHHHHHHHHHHHh
Confidence 55666666677665 2356667788888877663110 1111111111 1112222221
Q ss_pred -----------------------------cCChhHHHHHHHHHHHHHccchHHHHHh---HHHHHHHHHHhhcCCCcchH
Q 001855 242 -----------------------------NGNEATAQEALELLIELAGTEPRFLRRQ---LVDVVGSMLQIAEAESLEEG 289 (1004)
Q Consensus 242 -----------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~~ 289 (1004)
.++.+.+...++++..+.+.+...+... .-.+++.++-.. .+.+.+
T Consensus 229 ~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~--~h~~~e 306 (559)
T KOG2081|consen 229 LDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVA--GHNDTE 306 (559)
T ss_pred hhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhc--cCCchh
Confidence 2344444555555555554443322211 112333333333 334568
Q ss_pred HHHHHHHHHHHHHHhh--hccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHH
Q 001855 290 TRHLAIEFVITLAEAR--ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1004)
Q Consensus 290 vr~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~ 367 (1004)
+....+.+|..+.+.- .+.....+.+.+|..+++..+......+.+.... . +++++-...+....+.+..++-
T Consensus 307 vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l---~--Ee~~~f~~fR~~v~dvl~Dv~~ 381 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDL---P--EEESEFFEFRLKVGDVLKDVAF 381 (559)
T ss_pred hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccC---c--cchhHHHHHHHHHHHHHHHHHH
Confidence 8888999999987741 1222233446788889999988888776521100 0 1111122234456677778888
Q ss_pred hcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001855 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1004)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1004)
.+|++..+..+...+.+ .++.|+.-+|+++.+..++.+.+..-.+.++.++..+.+.= ....+|+.++..+|.+.+
T Consensus 382 iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~e 457 (559)
T KOG2081|consen 382 IIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSE 457 (559)
T ss_pred HhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHH
Confidence 88877777766666655 56789999999999999998876554556666666666532 223399999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcc--cccCchHHHHHHHHHHh
Q 001855 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--ILTPYLDGIVSKLLVLL 512 (1004)
Q Consensus 448 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~--~l~~~~~~i~~~l~~~l 512 (1004)
++..+ ...+..++..+...+.. . .....+..++..++..+... .+.|++..++..+....
T Consensus 458 w~~~~--p~~le~v~~~~~~~~~~-~--~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~ 519 (559)
T KOG2081|consen 458 WVEQH--PELLEPVLRYIRQGLQL-K--RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQ 519 (559)
T ss_pred HHHhC--cHHHHHHHHHHHHHhhh-c--chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 98655 35677788888888877 3 26777777888887766421 22344444444444433
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.58 E-value=5e-10 Score=128.09 Aligned_cols=471 Identities=13% Similarity=0.138 Sum_probs=298.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 22 ~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
.-+..++..+.++|-+.|+-..-+|..+.+.+|+..+...-.+.. +++|+.+|-+|...|..+- .++
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir-----------~~~ 136 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-----------VSS 136 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-----------cHH
Confidence 456677788888999999999999998887778743222222222 2788999999988887643 355
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc--chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW--PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~--~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1004)
..+.+-..+.+.+.+ .++.||++++.++.++.+.. | +.. ..+++.|.+++.++++.+...|+.+|..+.+..+..
T Consensus 137 i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~-p-elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 137 VLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDD-M-QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-c-ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 666777777788876 79999999999999998753 3 222 256788888899999999999999999998765543
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001855 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1004)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~ 257 (1004)
+. .....+..+...+.+- ++-.+...+++|.. +.+. +..... .+++.+...+++.++.+...|++++..
T Consensus 214 l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~---y~P~--~~~e~~----~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 214 IE-SSNEWVNRLVYHLPEC-NEWGQLYILELLAA---QRPS--DKESAE----TLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred hH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh---cCCC--CcHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 32 2233334444555554 44455556666533 2211 111122 456666666777889999999999998
Q ss_pred HHccc-hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCC
Q 001855 258 LAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1004)
Q Consensus 258 l~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1004)
+.... +..+...+..+...++.+. ..+++++..++..+..++.. .|. .+..-+..++.... |
T Consensus 283 l~~~~~~~~~~~~~~rl~~pLv~L~---ss~~eiqyvaLr~I~~i~~~---~P~-------lf~~~~~~Ff~~~~----D 345 (746)
T PTZ00429 283 LASRCSQELIERCTVRVNTALLTLS---RRDAETQYIVCKNIHALLVI---FPN-------LLRTNLDSFYVRYS----D 345 (746)
T ss_pred hcCcCCHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHHHHHHHH---CHH-------HHHHHHHhhhcccC----C
Confidence 87543 3333333334444444443 23577898888888777762 232 22222222221111 1
Q ss_pred ccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001855 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1004)
Q Consensus 337 ~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1004)
+ . ......|+.|..... +.-+..++..+.+...+.+...+..++.++|.++...+. ..
T Consensus 346 p----------------~-yIK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a 403 (746)
T PTZ00429 346 P----------------P-FVKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VA 403 (746)
T ss_pred c----------------H-HHHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HH
Confidence 1 1 123334444443333 455677888888888888999999999999999977654 34
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc--CCCCChhHHHHHHHHHHHHhhcCCc
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNFSENCTP 494 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l--~~~~~~~v~~~a~~~l~~l~~~~~~ 494 (1004)
+.++..++..+.+....+. .+..++..+....+.. + +++.+...+ .+..++..+.+.+|.++.+++...
T Consensus 404 ~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~----~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~- 474 (746)
T PTZ00429 404 PDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPEL----L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE- 474 (746)
T ss_pred HHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccH----H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh-
Confidence 5566666666655444343 4566666666544431 1 345555432 222457888888999999876543
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHH
Q 001855 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1004)
Q Consensus 495 ~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~ 574 (1004)
..+.++..++..+...+..||-+++.+...+....+.+.. ..+..+++...+ +.++..+|.+|+.....
T Consensus 475 -----~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~--~~~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 475 -----NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTT--HSDDPDVRDRAFAYWRL 543 (746)
T ss_pred -----hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHh--cCCChhHHHHHHHHHHH
Confidence 2356666666666667788998888888777766553332 233333332222 23456789998877766
Q ss_pred HH
Q 001855 575 VG 576 (1004)
Q Consensus 575 l~ 576 (1004)
+.
T Consensus 544 Ls 545 (746)
T PTZ00429 544 LS 545 (746)
T ss_pred Hc
Confidence 53
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.56 E-value=2e-09 Score=123.23 Aligned_cols=473 Identities=11% Similarity=0.071 Sum_probs=288.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHH
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~ 100 (1004)
++.++-..+.+.+...|+.|-+.+-.... ........+.+++. .+++.++|++.-+++.++.+.+ ++.
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt-~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~---------pel 102 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMT-MGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ---------PEK 102 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---------hHH
Confidence 44555555667777777777776544332 11112222333332 4678999999999999976543 444
Q ss_pred HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccc
Q 001855 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1004)
Q Consensus 101 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1004)
.-...+.+.+-+.+ +++.+|-.+.+.++.|. .+ ...+.+++.+.+++.+.++-+|..|..++..+....++.+.
T Consensus 103 alLaINtl~KDl~d-~Np~IRaLALRtLs~Ir---~~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~- 176 (746)
T PTZ00429 103 ALLAVNTFLQDTTN-SSPVVRALAVRTMMCIR---VS-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY- 176 (746)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC---cH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-
Confidence 44455667777776 79999998877777553 33 35567788888999999999999999999998876654321
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc
Q 001855 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1004)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 260 (1004)
-..+++.+..++.|. ++.|...|+.+|..+...-+ ..+ ......+..+...+.+-++..+...+++|....
T Consensus 177 -~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~-----~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~- 247 (746)
T PTZ00429 177 -QQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDYGS-----EKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR- 247 (746)
T ss_pred -ccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHhCc-----hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-
Confidence 123555666677887 99999999999999876421 111 112223333444444445666666666664422
Q ss_pred cchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001855 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1004)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1004)
|.. ......+++.+...+. +.++.|...|+.++..+.... .+. ........+-+.++..+..
T Consensus 248 --P~~-~~e~~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~--~~~---~~~~~~~rl~~pLv~L~ss-------- 309 (746)
T PTZ00429 248 --PSD-KESAETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRC--SQE---LIERCTVRVNTALLTLSRR-------- 309 (746)
T ss_pred --CCC-cHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcC--CHH---HHHHHHHHHHHHHHHhhCC--------
Confidence 211 1223456666665553 346788888888877775420 011 1122233343444443211
Q ss_pred CCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001855 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1004)
Q Consensus 341 ~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1004)
+...+..+...+..+....+ . ++..-+..+.-..+|+. .+|...+..+..++.. ..+..++
T Consensus 310 ----------~~eiqyvaLr~I~~i~~~~P-~-lf~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane------~Nv~~IL 370 (746)
T PTZ00429 310 ----------DAETQYIVCKNIHALLVIFP-N-LLRTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTP------SVAPEIL 370 (746)
T ss_pred ----------CccHHHHHHHHHHHHHHHCH-H-HHHHHHHhhhcccCCcH-HHHHHHHHHHHHHcCc------ccHHHHH
Confidence 11234455666666665443 2 22222333333345555 4799999999888754 4456677
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCc
Q 001855 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1004)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~ 500 (1004)
.-+.....+.+..++..+..++|.++..++. ....++..+++.+.+ .. .+...++.++..+++..+..
T Consensus 371 ~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~-----~a~~cV~~Ll~ll~~-~~-~~v~e~i~vik~IlrkyP~~----- 438 (746)
T PTZ00429 371 KELAEYASGVDMVFVVEVVRAIASLAIKVDS-----VAPDCANLLLQIVDR-RP-ELLPQVVTAAKDIVRKYPEL----- 438 (746)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhcC-Cc-hhHHHHHHHHHHHHHHCccH-----
Confidence 7788888888999999999999999977643 356667777777766 33 34556888999998876632
Q ss_pred hHHHHHHHHHHh---hcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHh
Q 001855 501 LDGIVSKLLVLL---QNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1004)
Q Consensus 501 ~~~i~~~l~~~l---~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~ 577 (1004)
.++..|...+ .-.++..|...+..+|..+....+ .+.++..+.+.+. .+...+|...+.+...+..
T Consensus 439 --~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~----~E~~~VqlqlLta~vKlfl 507 (746)
T PTZ00429 439 --LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIM----EHEQRVQLAILSAAVKMFL 507 (746)
T ss_pred --HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhc----cCCHHHHHHHHHHHHHHHh
Confidence 1344444432 223567888888888887765432 2233322322221 2445677777777666654
Q ss_pred hhC
Q 001855 578 AVG 580 (1004)
Q Consensus 578 ~~~ 580 (1004)
..+
T Consensus 508 ~~p 510 (746)
T PTZ00429 508 RDP 510 (746)
T ss_pred cCc
Confidence 443
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.7e-12 Score=137.10 Aligned_cols=363 Identities=17% Similarity=0.213 Sum_probs=249.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhHh-hhccc-cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH
Q 001855 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1004)
Q Consensus 145 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~-~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 222 (1004)
.+.+.+.+.+.+...+..+...+..+.+... +.+.. ....++|.+..++....++.++..|.++|.+++..-......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4455555666666666667777766655422 11111 223677888888875547999999999999999864221111
Q ss_pred hHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001855 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1004)
Q Consensus 223 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l 301 (1004)
-.-...+|. +..++.+++.+++..|++.|+.++...+..-.-.+. .++..++..+...+ .....+.+..+++.+
T Consensus 148 vv~agavp~----fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 148 VVDAGAVPI----FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNL 222 (514)
T ss_pred cccCCchHH----HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 111123443 555667889999999999999999877654333333 46666666665432 246778899999999
Q ss_pred HHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCC---cchHHH
Q 001855 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVA 378 (1004)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l 378 (1004)
|+.+.-.| ....+..++|.+...+...+. ....-+..++..|+..-... -+...+
T Consensus 223 crgk~P~P-----~~~~v~~iLp~L~~ll~~~D~-----------------~Vl~Da~WAlsyLsdg~ne~iq~vi~~gv 280 (514)
T KOG0166|consen 223 CRGKNPSP-----PFDVVAPILPALLRLLHSTDE-----------------EVLTDACWALSYLTDGSNEKIQMVIDAGV 280 (514)
T ss_pred HcCCCCCC-----cHHHHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHHhcCChHHHHHHHHccc
Confidence 99642111 113567888888887765421 12344566677666432200 112236
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001855 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1004)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1004)
+|.+..++.+.+..++-.|+.++|.++.+....-...+ ...+|.+...+. .+...+|..|||+++.++..-...+..-
T Consensus 281 v~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 281 VPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred hHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 77888899999999999999999999988776433333 346788888887 6667799999999999998776666444
Q ss_pred hhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001855 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1004)
Q Consensus 457 ~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 534 (1004)
.-..++|.++..++. .+-+.|..|++++++++....++.+ .|+ ..+++.+..++.-.+.++-..++.++..+....
T Consensus 361 ida~l~p~Li~~l~~-~ef~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 361 IDANLIPVLINLLQT-AEFDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHcccHHHHHHHHhc-cchHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 556899999999998 7789999999999999987765433 333 236777778887777788888889998887765
Q ss_pred Hh
Q 001855 535 QE 536 (1004)
Q Consensus 535 ~~ 536 (1004)
+.
T Consensus 439 e~ 440 (514)
T KOG0166|consen 439 EA 440 (514)
T ss_pred HH
Confidence 53
No 40
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.8e-07 Score=106.97 Aligned_cols=748 Identities=14% Similarity=0.112 Sum_probs=368.8
Q ss_pred HHHHHHHHhcccCC----CCcchHHHHHHHhhc--CCChhHHHHHHHHHHHhhhhHhh-hcc-ccHHHHHHHHHHhhcCC
Q 001855 125 CDTVSELASNILPE----NGWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIGD-TLT-PHLKHLHAVFLNCLTNS 196 (1004)
Q Consensus 125 ~~~l~~i~~~~~~~----~~~~~ll~~L~~~l~--~~~~~~r~~al~~l~~l~~~~~~-~~~-~~~~~l~~~l~~~l~~~ 196 (1004)
++++..+.++ .|. ..+++.+..|...++ +.+..++..++.||+.+...-+- .+. ....+.+..++...-+.
T Consensus 72 ~~LL~li~~~-VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~ 150 (1176)
T KOG1248|consen 72 AYLLVLILKY-VPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHK 150 (1176)
T ss_pred HHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcC
Confidence 4455555543 342 356666666666665 66778888999999988876321 121 11222223333333444
Q ss_pred CChHHHHHHHHHHHHHHHhhc---CcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHH
Q 001855 197 NNPDVKIAALNAVINFIQCLT---SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDV 273 (1004)
Q Consensus 197 ~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i 273 (1004)
.+.+|..|.+.+..++..-+ +.+ ...........+..+...+ .+......+..|.-+-..++.+-.+.+..+
T Consensus 151 -~pkvRk~a~~~i~~VL~~p~~~~~~~-HpA~~~vak~cl~~~e~~~---~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl 225 (1176)
T KOG1248|consen 151 -KPKVRKAAQRGIAAVLKGPPFAPDAE-HPASLSVAKFCLALIESKL---GSAENTTVLRSLMLLRDVLSTFPRPLIKSL 225 (1176)
T ss_pred -chHHHHHHHHHHHHHHcCCCCCcccc-chHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 89999999999999987421 111 1101111111222222222 223344444444444333444445677788
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCc
Q 001855 274 VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1004)
Q Consensus 274 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~ 353 (1004)
.+.++.+... .+..++..+++++..+... .|. .........++..+..+--.. .|+ --.-
T Consensus 226 ~e~lL~i~~~--s~v~v~~~~~q~l~~lf~~---~~~--~l~a~~~a~lL~al~~l~ps~-~D~------------~~t~ 285 (1176)
T KOG1248|consen 226 CEVLLNITTE--SPVLVLLEVLQCLHSLFKK---HPT--ALAAELNARLLTALMTLSPSE-NDD------------LLTV 285 (1176)
T ss_pred HHHHHhhccc--chHHHHHHHHHHHHHHHhc---CCC--cchHHHHHHHHHHHHHhCCCc-cch------------HHHH
Confidence 8888888744 4677889999999999874 332 111223344444444321111 110 0000
Q ss_pred cc-chHHHHHHHHHHhcC--CCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH-HHhhCCC
Q 001855 354 NY-SVGQECLDRLAIALG--GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM-VLNSFRD 429 (1004)
Q Consensus 354 ~~-~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~-l~~~l~d 429 (1004)
.| .+..+....++..-. .-.-.+.+.+.+...+.+...+.-.++-.++..+...+.. ..+.+... +-..+.-
T Consensus 286 ~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~ 361 (1176)
T KOG1248|consen 286 AWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT----VIDALCSKQLHSLLDY 361 (1176)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcc
Confidence 11 111111122221110 0123455666666677777777778888888877766543 22233332 3344454
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchH-------
Q 001855 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD------- 502 (1004)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~------- 502 (1004)
+...+-..++..++.+.+.++... .+++...+..+...-.+ ++-.-+...=.+++..+..++++.+...+|
T Consensus 362 kf~~~~~~ilqi~s~~fek~G~~s-~~~l~~~L~~l~~lr~~-~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s 439 (1176)
T KOG1248|consen 362 KFHAVWRFILQILSALFEKCGELS-GPELTKTLEGLCDLRAS-PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAES 439 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc-CHHHHHHHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccc
Confidence 555666677777888888777654 55666666665542222 222222233344444444444322111110
Q ss_pred ------HHHHHHHHHhhcCCh-hHHHH-----------------------HHHHHH-HHHHHhH------hhhHhhHhhh
Q 001855 503 ------GIVSKLLVLLQNGKQ-MVQEG-----------------------ALTALA-SVADSSQ------EHFQKYYDAV 545 (1004)
Q Consensus 503 ------~i~~~l~~~l~~~~~-~vr~~-----------------------a~~~l~-~l~~~~~------~~~~~~~~~i 545 (1004)
=++|.|.......+- ...+. .+.++. .+...++ -+...-+..+
T Consensus 440 ~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~l 519 (1176)
T KOG1248|consen 440 LSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDL 519 (1176)
T ss_pred cccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHH
Confidence 011111111111110 00000 111111 1111111 0111112333
Q ss_pred hHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhh--------ChhhhhhhHHHHHHHHHHHhcCCCCCCCc---hhhHHH
Q 001855 546 MPFLKAILVNATDKSNRMLRAKSMECISLVGMAV--------GKDKFRDDAKQVMEVLMSLQGSQMETDDP---TTSYML 614 (1004)
Q Consensus 546 ~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~--------~~~~~~~~~~~i~~~l~~l~~~~~~~~~~---~~~~~~ 614 (1004)
.+.+...+.. ...+|..++.+|..+...- +.+....+...+++.+++........... .+...+
T Consensus 520 a~~l~~al~~-----~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L 594 (1176)
T KOG1248|consen 520 APILGAALLK-----RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL 594 (1176)
T ss_pred HHHHHHHHhc-----chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 3333333322 1145555555555554331 12334555555666666544321111101 111111
Q ss_pred HHHH-HHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHH
Q 001855 615 QAWA-RLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1004)
Q Consensus 615 ~~l~-~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~ 693 (1004)
.... ......+ ..+...+.+.++.... + .++. +. . ...+.
T Consensus 595 ~~i~~~~~~~t~-------~dv~~~l~~s~~e~as-----------~---~~~s------------~~----~--~~~~s 635 (1176)
T KOG1248|consen 595 EIIRVDYFTVTP-------TDVVGSLKDSAGELAS-----------D---LDES------------VA----S--FKTLS 635 (1176)
T ss_pred HHHHHHHhhccc-------HHHHHHHHHHHHhHhc-----------c---chhh------------hh----h--HHHHH
Confidence 1100 1111111 1111112222110000 0 0000 00 0 01111
Q ss_pred HHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Q 001855 694 MLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALV 773 (1004)
Q Consensus 694 ~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 773 (1004)
.|-.++...+..-..++..++ .+.+.++...+..+++.+...|..++..- .......+.+..+...+.
T Consensus 636 lLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~-----------s~~~~~~q~i~~I~n~L~ 703 (1176)
T KOG1248|consen 636 LLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSP-----------SGEGLVEQRIDDIFNSLL 703 (1176)
T ss_pred HHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCC-----------chhhHHHHHHHHHHHHHH
Confidence 222222211111122233333 33344443447789999999998888651 113345566677777777
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhH
Q 001855 774 EALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQE 853 (1004)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~ 853 (1004)
..+.... ...+...+.++..+++.++ .++..-+...+.+++-... +..
T Consensus 704 ds~qs~~-~~~~~~rl~~L~~L~~~~~----~e~~~~i~k~I~EvIL~~K---------------------------e~n 751 (1176)
T KOG1248|consen 704 DSFQSSS-SPAQASRLKCLKRLLKLLS----AEHCDLIPKLIPEVILSLK---------------------------EVN 751 (1176)
T ss_pred HHHhccc-hHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHhcc---------------------------ccc
Confidence 7766543 3466678999999998875 2444455555555544321 012
Q ss_pred HHHHHHHHHHHHHHHH--Hcc-ccchh---hHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhH-HhhhHhHHH
Q 001855 854 EEVFDQVGEILGTLIK--TFK-AAFLP---FFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAA-LKYYETYLP 926 (1004)
Q Consensus 854 ~~~~~~~~~~l~~l~~--~~~-~~~~~---~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~-~~~~~~l~~ 926 (1004)
...|..+..||-.+.+ ..- +.-.| .+..+++.+...+ -..+...+...+-.++.++...+..+ .+++++++.
T Consensus 752 ~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl-~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 752 VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGL-VGDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 2345566667666663 211 11122 3455565555554 23444555555667777776655544 458999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHh
Q 001855 927 FLLEACNDENQDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1004)
Q Consensus 927 ~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~ 999 (1004)
.+...|....++++..|+..+..++...|. .+++|.+++|+.+..++.+. ...+|--+-.-+-++|+
T Consensus 831 ~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~------k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 831 MVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH------KIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 56899999999999988653 33455444444445544
No 41
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.51 E-value=6.9e-11 Score=133.11 Aligned_cols=566 Identities=16% Similarity=0.180 Sum_probs=363.8
Q ss_pred chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcC
Q 001855 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTN 195 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 195 (1004)
.+-..|.....-+..++....+...-.+++|++.+.+ ..+..+...+..-++.+....+.. .+...+.+.+.....+
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~--~~~~~ll~~le~l~~~ 170 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGP--EYAHMLLPPLELLATV 170 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccch--hHHHHhhHHHHhhhHH
Confidence 4555666777777778777666556678999999998 666677777777788777765432 2344555666666666
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch-HHHHHhHHHHH
Q 001855 196 SNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVV 274 (1004)
Q Consensus 196 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~i~ 274 (1004)
. ...+|..++..+...+..+... .... .++..+......+-...|..++.++.......+ ..+...+..++
T Consensus 171 e-et~vr~k~ve~l~~v~~~~~~~---~~~~----~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~ 242 (759)
T KOG0211|consen 171 E-ETGVREKAVESLLKVAVGLPKE---KLRE----HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIV 242 (759)
T ss_pred H-HHHHHHHHHHHHHHHHHhcChH---HHHH----HHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHH
Confidence 5 7889999999999999876432 1122 233333332222223356778888887766555 55555555555
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcc
Q 001855 275 GSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1004)
Q Consensus 275 ~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~ 354 (1004)
..+. .+..+.+|..+.+-+..+++. .+. ..-...+.|.+.....+ +..+.
T Consensus 243 ~~lc-----~d~~~~Vr~~~a~~l~~~a~~---~~~-----~~~~s~v~~~~~~L~~D-----------------dqdsV 292 (759)
T KOG0211|consen 243 QSLC-----QDDTPMVRRAVASNLGNIAKV---LES-----EIVKSEVLPTLIQLLRD-----------------DQDSV 292 (759)
T ss_pred Hhhc-----cccchhhHHHHHhhhHHHHHH---HHH-----HHHHhhccHHHhhhhhc-----------------chhhH
Confidence 4443 355788888888777777763 111 11112233333332221 13456
Q ss_pred cchHHHHHHHHHHhcCCC-cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001855 355 YSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1004)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1004)
+.+|...+..+...+..+ +....+.+.+.+...+.+|.+|+.....+..+....+. ........+.....++|....
T Consensus 293 r~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e 370 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWE 370 (759)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhh
Confidence 777888888888777655 66677788888888999999999988877777765544 122345567788889999999
Q ss_pred HHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHh
Q 001855 434 VRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1004)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l 512 (1004)
+|.++..-...+...+.... ..-..+.++|.+.....| .+.+||.+.+.....+....+.+ .-...+.+.++..+
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l 446 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNL 446 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhc
Confidence 99999988888888775211 012345667888888888 89999988888777776666532 33445566777778
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHh-hhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHH
Q 001855 513 QNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1004)
Q Consensus 513 ~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i 591 (1004)
++..+.||......+..+-...+. ...-+.+..+|.+...- .+..|.+|...++.+..++...|.+.|.+...++
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~----~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l 522 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA----EDLLWRVRLAILEYIPQLALQLGVEFFDEKLAEL 522 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc----cchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHH
Confidence 888888988887666444333221 23346677777777753 2236888888899999988888755555443322
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchh
Q 001855 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1004)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1004)
+..- +.+ ....++.++...+..++..+|... +...+++.++.....+ ++
T Consensus 523 ~~~~--l~d----~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~-~y---------------------- 571 (759)
T KOG0211|consen 523 LRTW--LPD----HVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQD-NY---------------------- 571 (759)
T ss_pred HHhh--hhh----hHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCc-cc----------------------
Confidence 2211 111 123578899999999999999433 3355666666665321 11
Q ss_pred hcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcC
Q 001855 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1004)
Q Consensus 672 ~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 751 (1004)
.. |.+.+.++..++..+|..+ +.+.+++.+..+..+ ..++||-.+++.+..+.....
T Consensus 572 -------~~-------R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D-~vanVR~nvak~L~~i~~~L~------ 628 (759)
T KOG0211|consen 572 -------LV-------RMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKD-PVANVRINVAKHLPKILKLLD------ 628 (759)
T ss_pred -------ch-------hhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccC-CchhhhhhHHHHHHHHHhhcc------
Confidence 11 2344556667777766543 345566666666665 488999999999998887652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001855 752 LAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (1004)
Q Consensus 752 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~ 796 (1004)
.+ ..+..+-++...+..+++.+++..+..+...+.
T Consensus 629 ------~~----~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 629 ------ES----VRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred ------hH----HHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 11 122222334455566777777776666655443
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=6.2e-11 Score=125.48 Aligned_cols=358 Identities=17% Similarity=0.211 Sum_probs=250.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhH-HHhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHccchH
Q 001855 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR-FQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEPR 264 (1004)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~ 264 (1004)
+.....+.+. +...+..+..++..+...-.++..... ....+| .+.+++. +.++..+..|.++|..++....+
T Consensus 69 ~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~----~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 69 ELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVP----RLVEFLSRDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHH----HHHHHHccCCChhHHHHHHHHHHHHhcCchh
Confidence 3444444554 677788888888888775432211111 123344 4444453 55689999999999999987766
Q ss_pred HHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCccccC
Q 001855 265 FLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHS 341 (1004)
Q Consensus 265 ~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~ 341 (1004)
.-.-.++ ..++.++.++. +.+..++.+|...+..++.. .|. + .+++ ..+++.++..+....
T Consensus 144 ~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagd---s~~-~---Rd~vl~~g~l~pLl~~l~~~~------- 207 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGD---SPD-C---RDYVLSCGALDPLLRLLNKSD------- 207 (514)
T ss_pred hccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccC---ChH-H---HHHHHhhcchHHHHHHhcccc-------
Confidence 5444333 34555566653 45789999999999999873 332 2 2222 235666666554321
Q ss_pred CCCCCccccCCcccchHHHHHHHHHHhcCCC---cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-
Q 001855 342 AETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE- 417 (1004)
Q Consensus 342 ~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~- 417 (1004)
..+..+.+..+|..++....+. ..+..++|.+...+.+.+..+..-|+++++.++++..+.+...++
T Consensus 208 ---------~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 208 ---------KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA 278 (514)
T ss_pred ---------chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 1235567888999998765322 455678899999999999999999999999999998886655554
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccc
Q 001855 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1004)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l 497 (1004)
.++|.+...|.++++.++..|+.++|.++..-......-.-...+|.+...+...+...++..||++++++..+.. +.+
T Consensus 279 gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~-~qi 357 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ-EQI 357 (514)
T ss_pred cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH-HHH
Confidence 4789999999999999999999999998875433321223457788888888743666799999999999987543 223
Q ss_pred cCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhcCcccchhhhHHHHHHHHH
Q 001855 498 TPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1004)
Q Consensus 498 ~~~~-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~ 574 (1004)
...+ ..+++.|+.+++..+.++|..|..+++++......+..+|+ ..+++++..+| ...+ ..+-..+++++..
T Consensus 358 qaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D---~~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 358 QAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPD---VKIILVALDGLEN 433 (514)
T ss_pred HHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCC---hHHHHHHHHHHHH
Confidence 2222 36889999999999999999999999999877666666666 45788888887 3222 2234457777777
Q ss_pred HHhhh
Q 001855 575 VGMAV 579 (1004)
Q Consensus 575 l~~~~ 579 (1004)
+....
T Consensus 434 il~~~ 438 (514)
T KOG0166|consen 434 ILKVG 438 (514)
T ss_pred HHHHH
Confidence 76543
No 43
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4e-07 Score=99.61 Aligned_cols=721 Identities=13% Similarity=0.159 Sum_probs=372.0
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcc-hHhHHHHHHHHHHHHHhcccCCC-Ccc---
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES-AKSISKKLCDTVSELASNILPEN-GWP--- 142 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~-~~~vr~~~~~~l~~i~~~~~~~~-~~~--- 142 (1004)
+++|.+|+-|-..|+..=.. + ..--.+++.+.++. +..+|.+++..+....+..|... .-|
T Consensus 16 ~pdps~rk~aEr~L~~~e~q----------~----~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ----------Q----NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred CCCCccCchHHHHHHHhccC----------C----CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 56699999999988873221 1 11124667776543 78899999999999888555321 111
Q ss_pred -----hHH-HHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001855 143 -----ELL-PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1004)
Q Consensus 143 -----~ll-~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 216 (1004)
+.+ ..+..++-+.......---.+++.+.+. +|...+++++|-+...++.. +-.+-...+..-.+++...
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~---DFP~kWptLl~dL~~~ls~~-D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR---DFPDKWPTLLPDLVARLSSG-DFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc---ccchhhHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHhc
Confidence 222 2333444344344444444455544443 34446899999888888876 6666666666666666654
Q ss_pred cCcchHh----HHHhhHH-------HHHHHHHHHHh--cCChhHHHHHHH-------HHHHHH-ccchHHHHHhHHHHHH
Q 001855 217 TSSADRD----RFQDLLP-------LMMRTLTESLN--NGNEATAQEALE-------LLIELA-GTEPRFLRRQLVDVVG 275 (1004)
Q Consensus 217 ~~~~~~~----~~~~~~~-------~~l~~l~~~l~--~~~~~~~~~a~~-------~L~~l~-~~~~~~~~~~~~~i~~ 275 (1004)
......+ .+.-.+. .++....+..+ +.+.......+. ++..+. ...|++|+.++...++
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 3221111 1111111 12222222221 223332222233 333332 2348999999999998
Q ss_pred HHHHhhcC--C-----Ccc----hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCC
Q 001855 276 SMLQIAEA--E-----SLE----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1004)
Q Consensus 276 ~l~~~~~~--~-----~~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1004)
..++.+.. + +.+ +++|...++.+.-.+.. .+ ..+.+++..++......+.....++.++
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k---Ye---Eef~~fl~~fv~~~W~LL~~~s~~~kyD---- 307 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK---YE---EEFQPFLPDFVTATWNLLVSTSPDTKYD---- 307 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh---hH---HHHHhhHHHHHHHHHHHHHhcCCCccHH----
Confidence 88877641 1 111 23455666665555442 11 2456677788777777776654433111
Q ss_pred CCccccCCcccchHHHHHHHHHHhcCCCc--chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHH
Q 001855 345 EDEDAGESSNYSVGQECLDRLAIALGGNT--IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLS 421 (1004)
Q Consensus 345 ~~~d~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~ 421 (1004)
.....|.+.|..++..-.... ..+.++..+.+.+.=++...|.. -.+.++ +-+.
T Consensus 308 --------~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e---------------DeElFED~ple 364 (960)
T KOG1992|consen 308 --------YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE---------------DEELFEDNPLE 364 (960)
T ss_pred --------HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh---------------hHHHhccCHHH
Confidence 011223444444432111000 11223333333222222222221 112222 2556
Q ss_pred HHHhhCCCCChhH-HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC--CChhHHHHHHHHHHHHhhcCCccccc
Q 001855 422 MVLNSFRDPHPRV-RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF--QNPRVQAHAASAVLNFSENCTPEILT 498 (1004)
Q Consensus 422 ~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~~v~~~a~~~l~~l~~~~~~~~l~ 498 (1004)
.+.+-+...+... |++|+..+..+++.+...+ ...+...+..++...... .++.-+..+...+..+........ .
T Consensus 365 YiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v-t~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~-~ 442 (960)
T KOG1992|consen 365 YIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV-TGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK-H 442 (960)
T ss_pred HHHHhcccCCcchhHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh-c
Confidence 6666675554443 5688889999998886555 555666666666544321 233334445544444443321100 0
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhh
Q 001855 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1004)
Q Consensus 499 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~ 578 (1004)
. ....+. +..+... |...++|.|.. ++..+...+|..++..+-.+-..
T Consensus 443 G------------vtstn~---------lvdv~~F-------f~~~ilp~L~s----~~vn~~pilka~aIKy~~~FR~q 490 (960)
T KOG1992|consen 443 G------------VTSTNE---------LVDVVDF-------FANQILPDLLS----PNVNEFPILKADAIKYIYTFRNQ 490 (960)
T ss_pred c------------eeeccc---------cccHHHH-------HHHHhhHHhcc----Cccccccchhhcccceeeeeccc
Confidence 0 000000 0000111 22333343332 12223344555555555555555
Q ss_pred hChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc---------cCcccchhhhhHHHHHHcccCCCc
Q 001855 579 VGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG---------QDFLPYMSVVMPPLLQSAQLKPDV 649 (1004)
Q Consensus 579 ~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~l~~i~~~ll~~~~~~~~~ 649 (1004)
+|++....+++.++..+ .. ....+..|+..++..+-...+ +++.||+..++..+++.++....
T Consensus 491 l~~~~lm~~~p~li~~L----~a---~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~- 562 (960)
T KOG1992|consen 491 LGKEHLMALLPRLIRFL----EA---ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK- 562 (960)
T ss_pred CChHHHHHHHHHHHHhc----cC---cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc-
Confidence 55554333333333322 11 122355566666665544433 34677878788888877654211
Q ss_pred cccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhcccc----CccC
Q 001855 650 TITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL----KFYF 725 (1004)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~----~~~~ 725 (1004)
.+- ...++++-.+..-......|+.+.++..+.+.+ .+..
T Consensus 563 ----------------~En--------------------eylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs 606 (960)
T KOG1992|consen 563 ----------------AEN--------------------EYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPS 606 (960)
T ss_pred ----------------ccc--------------------HHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 111 112334444444455666676666665544432 2333
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCH
Q 001855 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDE 805 (1004)
Q Consensus 726 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 805 (1004)
++..--.-+++++-+++... ..++..+..+....+|.+...+.+| =.+...-++..+..++..++..+ +
T Consensus 607 ~P~fnHYLFEsi~~li~~t~---------~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~i-p 675 (960)
T KOG1992|consen 607 NPQFNHYLFESIGLLIRKTC---------KANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTI-P 675 (960)
T ss_pred CchhHHHHHHHHHHHHHHHh---------ccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCC-c
Confidence 55666666777777766542 2245566677777777766666554 23455556777787887776633 3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccch--hhHHHH
Q 001855 806 GQVRSIVDEIKQ-VITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL--PFFDEL 882 (1004)
Q Consensus 806 ~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l 882 (1004)
+.+.++++-+.+ .|.+.. | -...+..++..+++..+..+. ..+..+
T Consensus 676 ~~~~~l~~~lLsp~lW~r~----------g---------------------NipalvrLl~aflk~g~~~~~~~~~l~~i 724 (960)
T KOG1992|consen 676 DSYSPLFPPLLSPNLWKRS----------G---------------------NIPALVRLLQAFLKTGSQIVEAADKLSGI 724 (960)
T ss_pred hhHHHHHHHhcCHHHHhhc----------C---------------------CcHHHHHHHHHHHhcCchhhcccccchhH
Confidence 445555443322 111110 1 122466778888888776554 444555
Q ss_pred HHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-HHhhhHhHHHHHHhhcCCCCh--hHHHHHHHHHHHHHhhcccchH
Q 001855 883 SSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEACNDENQ--DVRQAAVYGLGVCAEFGGSVVK 959 (1004)
Q Consensus 883 l~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~~~~~l~~~~~--~vr~~a~~~lg~l~~~~~~~~~ 959 (1004)
+..+.+.+ .++..+ ..++..+..++.+.+.. +.||+.++...+++.++++.. -++...++..-..++.++....
T Consensus 725 LGifqkLi-aSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~ 801 (960)
T KOG1992|consen 725 LGIFQKLI-ASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLA 801 (960)
T ss_pred HHHHHHHh-cCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555555 233332 34566778888887765 578999999999999998653 3677777666666666665444
Q ss_pred HHH
Q 001855 960 PLV 962 (1004)
Q Consensus 960 ~~~ 962 (1004)
+.+
T Consensus 802 e~~ 804 (960)
T KOG1992|consen 802 EVI 804 (960)
T ss_pred HHH
Confidence 443
No 44
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.43 E-value=8.9e-07 Score=98.09 Aligned_cols=706 Identities=13% Similarity=0.131 Sum_probs=342.9
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC----Ccc-
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN----GWP- 142 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~----~~~- 142 (1004)
+.++.+|..|..-|+. |+. ++.....+.+...+. +.+-..|+.+...+.++..+.|..+ ..|
T Consensus 15 s~d~~vr~~AE~~l~q---------le~-~~~f~~aL~~va~~~---~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQ---------LEL-TEGFGVALAEVAANK---DASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred CCChhHHHHHHHHHhc---------ccc-chHHHHHHHHHHhCc---ccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 6789999999999988 542 344444433333322 2455678877777777776554321 111
Q ss_pred --------hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001855 143 --------ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1004)
Q Consensus 143 --------~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 214 (1004)
-+...|...+.+++...|.++..++..++...-+ ..++++++.+.+++.+. +..--..|++++..+..
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P---d~WpElv~~i~~~l~~~-n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP---DEWPELVPFILKLLSSG-NENSIHGAMRVLAELSD 157 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc---hhhHHHHHHHHHHHhcc-chhhhhhHHHHHHHHHH
Confidence 1345555666666777888888888887775322 26899999999999986 77777889999998887
Q ss_pred hhcCcchHhHHHh----hHHHHHHHHHHHHhcCChhHHHHHH-----HHHHHHHccchH--------HHHHhHHHHHHHH
Q 001855 215 CLTSSADRDRFQD----LLPLMMRTLTESLNNGNEATAQEAL-----ELLIELAGTEPR--------FLRRQLVDVVGSM 277 (1004)
Q Consensus 215 ~~~~~~~~~~~~~----~~~~~l~~l~~~l~~~~~~~~~~a~-----~~L~~l~~~~~~--------~~~~~~~~i~~~l 277 (1004)
..- ...... .++.+. .++..........|..+. .....+++.+.+ ++.+.+..+++.+
T Consensus 158 ev~----~ee~~~~~~~~l~~m~-~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l 232 (1005)
T KOG2274|consen 158 EVD----VEEMFFVGPVSLAEMY-RIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDIL 232 (1005)
T ss_pred HHH----HHHHhcccccchhhhh-hhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 641 111111 112221 222222222222333222 112223333322 2223333333333
Q ss_pred HHhhcCCC-cchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC----------CCccccCCCCCC
Q 001855 278 LQIAEAES-LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE----------DDPLWHSAETED 346 (1004)
Q Consensus 278 ~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~----------~~~~~~~~~~~~ 346 (1004)
...+...+ .+-..|...+.++..+.++ .|. ...++....++...+.+...- .....+... |
T Consensus 233 ~h~l~~~~g~~~~~~~eilk~~t~l~~n---fp~---~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~--d 304 (1005)
T KOG2274|consen 233 EHPLQRNDGSDFSLRMEILKCLTQLVEN---FPS---LINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARY--D 304 (1005)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHHHh---hHH---hhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCccccc--C
Confidence 32222222 2234666777777777764 332 233444454444443322110 000111111 1
Q ss_pred ccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh
Q 001855 347 EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1004)
Q Consensus 347 ~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 426 (1004)
.|....+........++.+...+.. .++.+.+..+-+.. -.-+.++-++.+..-+ -+..+.=..+..
T Consensus 305 sd~e~~~~~~l~i~i~eF~s~i~t~--------~~~~~ti~~~l~~l-I~~~v~y~Qlseeqie---~w~sD~~~fV~d- 371 (1005)
T KOG2274|consen 305 SDPEEKSVETLVIQIVEFLSTIVTN--------RFLSKTIKKNLPEL-IYQLVAYLQLSEEQIE---VWTSDVNQFVAD- 371 (1005)
T ss_pred CchhhhChHHhhhhHHHHHHHHHHH--------HHHHHHhhhhhHHH-HHHHHHHHHhhHHHHH---HHhccHHHhhcc-
Confidence 1111111222222222222211110 00000000000000 0000111111111000 011001011111
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh---------cCCCCChhHHHHHHHHHHHHhhcCCcccc
Q 001855 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA---------MDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1004)
Q Consensus 427 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~---------l~~~~~~~v~~~a~~~l~~l~~~~~~~~l 497 (1004)
.|+...+|..+...+-.+...++..- ...+....-+. ++....+..+.....+....- .....
T Consensus 372 -Ed~~~~~~~~~rd~~~~v~~~f~~~~----i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~---~~~~~ 443 (1005)
T KOG2274|consen 372 -EDDGYTARISVRDLLLEVITTFGNEG----INPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR---IDDAN 443 (1005)
T ss_pred -CCCCchhhhhHHHHHHHHHHhccchh----hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc---cCcch
Confidence 11112344444444444444443221 22222222221 222112223333333333322 11112
Q ss_pred cCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHH
Q 001855 498 TPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1004)
Q Consensus 498 ~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~ 576 (1004)
-.++..++..+...+... .+..-..++.+++..+.... .-.+.+..++......+.. +....+|.+|+.++...+
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~-~~~~~~~~fl~~~v~~l~~---~~~~~~ki~a~~~~~~~~ 519 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV-INPQLLQHFLNATVNALTM---DVPPPVKISAVRAFCGYC 519 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhcc---CCCCchhHHHHHHHHhcc
Confidence 234444444444443322 34333366666664443321 1123445555555554432 345567777777666555
Q ss_pred hhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccch-hhhhHHHHHHcccCCCccccCCC
Q 001855 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM-SVVMPPLLQSAQLKPDVTITSAD 655 (1004)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~ll~~~~~~~~~~~~~~~ 655 (1004)
+.+...+..+.+++.+.++... ..+.+...++.++..+++.- ..|.--. ..+.|..+.....-.
T Consensus 520 ---~~~vl~~~~p~ild~L~qlas~---~s~evl~llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s-------- 584 (1005)
T KOG2274|consen 520 ---KVKVLLSLQPMILDGLLQLASK---SSDEVLVLLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYS-------- 584 (1005)
T ss_pred ---CceeccccchHHHHHHHHHccc---ccHHHHHHHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhc--------
Confidence 5677888889999999886542 23445556666766665543 2332211 223333333321100
Q ss_pred CCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCcc---CCHHHHHH
Q 001855 656 SDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY---FHEEVRKA 732 (1004)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~vr~~ 732 (1004)
+|..+ -..+-.++..++. ......|+.+.+++.++..+... ........
T Consensus 585 --------~DP~V-------------------~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~ 636 (1005)
T KOG2274|consen 585 --------EDPQV-------------------ASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAI 636 (1005)
T ss_pred --------CCchH-------------------HHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHH
Confidence 01100 1223344545444 23457888899999888877632 12455666
Q ss_pred HHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC-----CCCHHH
Q 001855 733 AVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP-----LLDEGQ 807 (1004)
Q Consensus 733 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ 807 (1004)
++..+..+++.. .++..+.++...+|++.+..-...|.+++...-+||+..+....+ ...+++
T Consensus 637 aidvLttvvr~t------------p~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~ 704 (1005)
T KOG2274|consen 637 AIDVLTTVLRNT------------PSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGH 704 (1005)
T ss_pred HHHHHHHHHhcC------------CCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence 666666666532 233456678888998888776666777888888888887764111 111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhH
Q 001855 808 -VRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYL 886 (1004)
Q Consensus 808 -~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l 886 (1004)
+..+++.+.++|..-. ++..-..++.++-+++.++|..+.|.+..++..+
T Consensus 705 ~~~yImqV~sqLLdp~~-----------------------------sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Av 755 (1005)
T KOG2274|consen 705 NLWYIMQVLSQLLDPET-----------------------------SDSAAAFVGPLVLTLITHASSELGPNLDQILRAV 755 (1005)
T ss_pred cHHHHHHHHHHHcCCcc-----------------------------chhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 3345554444443311 0111126889999999999999999999999988
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHH
Q 001855 887 TPMWGKDKTAEERRIAICIFDDVAEQ 912 (1004)
Q Consensus 887 ~~~l~~~~~~~~r~~al~~l~~l~~~ 912 (1004)
+..++......+-++-+.+++.++..
T Consensus 756 isrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 756 ISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 88887666677777777777776544
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.8e-07 Score=105.56 Aligned_cols=476 Identities=14% Similarity=0.178 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhHhh
Q 001855 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGD 176 (1004)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~ 176 (1004)
++..+.+...|++.+.+ .+..||..+|..+++++.. .|..--.+.+...+..+... +...-++|+.+|+.++..- =
T Consensus 336 ~eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~r-lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-l 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSR-LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-L 412 (1133)
T ss_pred HHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHcc-CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-C
Confidence 47888999999999997 8999999999999999986 34222234455555544332 3567789999999877641 0
Q ss_pred hccccHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHH-HHHHhcCChhHH
Q 001855 177 TLTPHLKHLHAVFLNCLTNS-------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTL-TESLNNGNEATA 248 (1004)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~l~~~~~~~~ 248 (1004)
.+...+..++|++.+++.-+ ....||.+|+..+.++....+. +.+..++..+...+ ..++=|++...|
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~----~~l~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP----SDLKPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh----hhhhHHHHHHHHHHHHHHhcCchhhHh
Confidence 01124678888888877532 2568999999999999988743 32333333333322 233346788899
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH
Q 001855 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (1004)
Q Consensus 249 ~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (1004)
.+|..+|.+.+.+.+.+ ||--+++... +...-..|.++ +..++.. ...++.|...++..++.
T Consensus 489 RAAsAAlqE~VGR~~n~--p~Gi~Lis~~------dy~sV~~rsNc---y~~l~~~-------ia~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNF--PHGISLISTI------DYFSVTNRSNC---YLDLCVS-------IAEFSGYREPVFNHLLT 550 (1133)
T ss_pred HHHHHHHHHHhccCCCC--CCchhhhhhc------chhhhhhhhhH---HHHHhHH-------HHhhhhHHHHHHHHHHh
Confidence 99999999998775543 1212222111 11111223333 3333331 12345566777777664
Q ss_pred h-hcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 001855 329 M-LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG 407 (1004)
Q Consensus 329 ~-l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 407 (1004)
. +.. |+ ...+..+..+|..|+..-+ +......++-+.....+.+...|++...+.|.++.+
T Consensus 551 ~Kv~H------Wd-----------~~irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 551 KKVCH------WD-----------VKIRELAAYALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred ccccc------cc-----------HHHHHHHHHHHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 3 222 31 1244567778888877665 444434444444555567889999999999988876
Q ss_pred cHHHH--HH--------hHHHHHHHHHhhCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCCh
Q 001855 408 CAKVM--VK--------NLEQVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP 475 (1004)
Q Consensus 408 ~~~~~--~~--------~l~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 475 (1004)
+...- .. .+..+++.+...-... ...+|.+.+..+..+...-...............+.+.+.+ ++
T Consensus 613 ~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n- 690 (1133)
T KOG1943|consen 613 LRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN- 690 (1133)
T ss_pred hhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-
Confidence 54311 11 1122233222221111 24667777777766654332211111122222333444455 45
Q ss_pred hHHHHHHHHHHHHhhcCCcccccCchH-HHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH
Q 001855 476 RVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1004)
Q Consensus 476 ~v~~~a~~~l~~l~~~~~~~~l~~~~~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (1004)
.+|.+|.++++.++...-.. .++.. .++...+..+.+. +..+|.....+++.+....-. .++-+.+...+....
T Consensus 691 ~i~~~av~av~~l~s~y~~~--d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~lc~~~l~~~ 766 (1133)
T KOG1943|consen 691 QIRDAAVSAVSDLVSTYVKA--DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKLCKLVLELL 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHhc--CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHHHHHHhccC
Confidence 78999999999998754211 11212 4666677766666 567777777777666532110 022233322222221
Q ss_pred hhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHh-cCCCCCC----CchhhHHHHHHHHHHhHhc
Q 001855 554 VNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ-GSQMETD----DPTTSYMLQAWARLCKCLG 625 (1004)
Q Consensus 554 ~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~-~~~~~~~----~~~~~~~~~~l~~l~~~~~ 625 (1004)
. .+ -...-|...+.++..+...++...+....+++++.+++.. +-..+.. .-+|++++.++..+...+.
T Consensus 767 p--~d-~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 767 P--SD-AWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred c--cc-ccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 1 11 1233456667777777777765556666777777777733 3211111 2378888888777665543
No 46
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.39 E-value=2.3e-09 Score=121.03 Aligned_cols=537 Identities=13% Similarity=0.112 Sum_probs=330.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhc--CchHHHHHH---HHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 24 FETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKL---AHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 24 l~~ll~~~~s~~~~~r~~A~~~L~~~~~~--~p~~~~~~L---~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
+.+-+......+-++...+..++.-+..- .|+ |...+ ++.+.......+|+.+.-.+...+..+ +.
T Consensus 122 lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~-~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~--------~~ 192 (759)
T KOG0211|consen 122 LIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPE-YAHMLLPPLELLATVEETGVREKAVESLLKVAVGL--------PK 192 (759)
T ss_pred hhhHHHHhccchhHHHHHHHHHhcccchhccchh-HHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--------Ch
Confidence 33334444444445555555555443331 121 22222 233334556778999999988887654 33
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhc
Q 001855 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1004)
+........++..+.......-|..++.+++..+...-+...-.++.|...++.++.++.+|..+..-++.+....+...
T Consensus 193 ~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~ 272 (759)
T KOG0211|consen 193 EKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI 272 (759)
T ss_pred HHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH
Confidence 33323333344444432233445566666666554332223446788888899999999999999999999888877642
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001855 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1004)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 258 (1004)
....+++.+.+...|. ...||..|+.++..+...+.... +....+.+.+.+..++.++.+|......+..+
T Consensus 273 --~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~------d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L 343 (759)
T KOG0211|consen 273 --VKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD------DVVKSLTESLVQAVEDGSWRVSYMVADKFSEL 343 (759)
T ss_pred --HHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch------hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhH
Confidence 3466778888888887 88999999999999999875321 33445666777777788888888777777766
Q ss_pred HccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001855 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1004)
Q Consensus 259 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1004)
....+. ...-.+.++.....+ ++...+.|..+..-...++......+ ...-..+.++|.+.....+...
T Consensus 344 ~~~~~~--~~~~~~~~~~~~~l~--~~~~~e~r~a~a~~~~~l~~~l~~~~----~~~i~~~~ilp~~~~lv~d~~~--- 412 (759)
T KOG0211|consen 344 SSAVGP--SATRTQLVPPVSNLL--KDEEWEVRYAIAKKVQKLACYLNASC----YPNIPDSSILPEVQVLVLDNAL--- 412 (759)
T ss_pred HHHhcc--ccCcccchhhHHHHh--cchhhhhhHHhhcchHHHhhhcCccc----ccccchhhhhHHHHHHHhcccc---
Confidence 543332 111112233333333 33445555444332333332110000 0011224456666554443211
Q ss_pred ccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH-HHHHhHH
Q 001855 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLE 417 (1004)
Q Consensus 339 ~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~ 417 (1004)
..+.+.......+...+|.+...+.+.|.+...+++....+|......+..+-..... .+..+-+
T Consensus 413 --------------~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 413 --------------HVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred --------------hHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 1111112222223333445567777888888889999999998877655433322211 2334456
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccc
Q 001855 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1004)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l 497 (1004)
..+|.+...-.|.++++|.+..+.+-.++...+..+ +-+.+-+.+...+.| ....+|.+|...+..++..++.
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~---~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~--- 551 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF---FDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGS--- 551 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH---hhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCc---
Confidence 778888888888899999999999999988776433 222344444555666 6678999999999999999883
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHh
Q 001855 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1004)
Q Consensus 498 ~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~ 577 (1004)
..+...+++.++....+++...|...+.++..++..+|..+ +...++|.+..... +....+|..+...+..+..
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~----D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVK----DPVANVRINVAKHLPKILK 625 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhcc----CCchhhhhhHHHHHHHHHh
Confidence 35677888888888877789999999999999999999754 55677777777543 2345678888888888776
Q ss_pred hhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHh
Q 001855 578 AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCK 622 (1004)
Q Consensus 578 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 622 (1004)
.+.......++.++...+.. + .+-.++-.+..+++.+..
T Consensus 626 ~L~~~~~~~~v~pll~~L~~--d----~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 626 LLDESVRDEEVLPLLETLSS--D----QELDVRYRAILAFGSIEL 664 (759)
T ss_pred hcchHHHHHHHHHHHHHhcc--C----cccchhHHHHHHHHHHHH
Confidence 66544444444444444433 1 122355555556555543
No 47
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.36 E-value=2.4e-11 Score=117.58 Aligned_cols=362 Identities=16% Similarity=0.185 Sum_probs=230.9
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhh-HhhhccccH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch
Q 001855 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1004)
Q Consensus 144 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 221 (1004)
=+|.+.+.+.+.+.+....|..-++.+.+. ..+.+.+.+ ..++|.|.++|......-.+..|.++|.+++..-.....
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 357787777777777777777777765543 333343333 346778888884443667778999999999876432111
Q ss_pred HhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001855 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1004)
Q Consensus 222 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~ 299 (1004)
.-.-...+|.+++.| .+.+.++|..+++.|+.++...+. ...|+- ..++.++.++.....+-++.+.+-..++
T Consensus 152 vVvd~~AVPlfiqlL----~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 152 VVVDAGAVPLFIQLL----SSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred EEEeCCchHHHHHHH----cCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 111123456666554 467889999999999999865543 233322 3445555555333334456677788889
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchH---
Q 001855 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP--- 376 (1004)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~--- 376 (1004)
.+|+-+.-.| ....+.+.+|.+.+++-..+. ....-|..++..++..- .+-..
T Consensus 227 NlcRGknP~P-----~w~~isqalpiL~KLiys~D~-----------------evlvDA~WAiSYlsDg~--~E~i~avl 282 (526)
T COG5064 227 NLCRGKNPPP-----DWSNISQALPILAKLIYSRDP-----------------EVLVDACWAISYLSDGP--NEKIQAVL 282 (526)
T ss_pred HhhCCCCCCC-----chHHHHHHHHHHHHHHhhcCH-----------------HHHHHHHHHHHHhccCc--HHHHHHHH
Confidence 9998532112 223567788888776543211 12223445555554321 11111
Q ss_pred --HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001855 377 --VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1004)
Q Consensus 377 --~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1004)
.+.+.+.+.+.+++-++..-++..+|.++.+....-.-.+ -..++.+...|+++...+|..|||+++.+...-...+
T Consensus 283 d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqi 362 (526)
T COG5064 283 DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQI 362 (526)
T ss_pred hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHH
Confidence 2345677888999999999999999999987654211111 1245667777889989999999999999976554444
Q ss_pred HhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCc-ccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001855 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1004)
Q Consensus 454 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-~~l~~~~--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l 530 (1004)
..-.-..++|.++..|.. ....+++.||+++.+...++.. ..+..|+ ...+..|..+++-.+.++-+.++.++.++
T Consensus 363 qavid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 363 QAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred HHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH
Confidence 233446788999999988 7788999999999999876531 1122222 23455666677766777778888888887
Q ss_pred HHHhH
Q 001855 531 ADSSQ 535 (1004)
Q Consensus 531 ~~~~~ 535 (1004)
.....
T Consensus 442 Lk~Ge 446 (526)
T COG5064 442 LKVGE 446 (526)
T ss_pred Hhhhh
Confidence 75433
No 48
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.29 E-value=7.8e-10 Score=116.75 Aligned_cols=271 Identities=17% Similarity=0.206 Sum_probs=171.0
Q ss_pred HHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC-------C-------hhHHHHHHHHHHHHHccchHHHHHhHH
Q 001855 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-------N-------EATAQEALELLIELAGTEPRFLRRQLV 271 (1004)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-------~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~ 271 (1004)
+..+..+...+...+-++.|.+.+..++..+...+.-+ + +.++..+++++....+.+.+.+.++++
T Consensus 57 l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~ 136 (370)
T PF08506_consen 57 LKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLP 136 (370)
T ss_dssp HHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433222234556666777776665544311 1 135677889999999999999999999
Q ss_pred HHHHHHHHhhcCC---CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcCCCCC-ccccCCCCC-
Q 001855 272 DVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIEDD-PLWHSAETE- 345 (1004)
Q Consensus 272 ~i~~~l~~~~~~~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~-~~~~~~~~~- 345 (1004)
.++...++++..- ...+.+...|++++..+++..... ..+ ..+++++.++.. +++.|+..++| +.|++++.|
T Consensus 137 ~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~-~lf-~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EY 214 (370)
T PF08506_consen 137 TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHK-NLF-ENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEY 214 (370)
T ss_dssp HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHH-TTT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHH-HHh-CCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHH
Confidence 9998888877432 223556778999999887732111 011 125677777664 46666654333 235433322
Q ss_pred ----CccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhc------CCChhHHHHHHHHHHHHHhhcHH-----
Q 001855 346 ----DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK----- 410 (1004)
Q Consensus 346 ----~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~----- 410 (1004)
-|..+..+.+++|..++..++...+ +.+.+.+..+++..++ +.+|+.+.+|+..++.++.....
T Consensus 215 Irrd~e~sd~~TrR~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gv 293 (370)
T PF08506_consen 215 IRRDLEGSDSDTRRRAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGV 293 (370)
T ss_dssp HHHHSCSS---SHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-
T ss_pred HHhhccccccCCcHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCc
Confidence 1112345678899999999998886 5677777777777765 46899999999999999875421
Q ss_pred -------HHHHhHHH-HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHH
Q 001855 411 -------VMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAA 482 (1004)
Q Consensus 411 -------~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~ 482 (1004)
.+..++.+ ++|.+. .-.+.+|.+|..|++.+..+-..+++ +.+..++|.+..+|.+ ++.-|+..|+
T Consensus 294 t~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyAA 367 (370)
T PF08506_consen 294 TQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQS-SSYVVHTYAA 367 (370)
T ss_dssp S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTS-S-HHHHHHHH
T ss_pred ccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCC-CCcchhhhhh
Confidence 12333333 335544 23366899999999999999887764 5688999999999999 8888888887
Q ss_pred HHH
Q 001855 483 SAV 485 (1004)
Q Consensus 483 ~~l 485 (1004)
.++
T Consensus 368 ~~i 370 (370)
T PF08506_consen 368 IAI 370 (370)
T ss_dssp HHH
T ss_pred hhC
Confidence 764
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.27 E-value=2.6e-08 Score=111.75 Aligned_cols=395 Identities=18% Similarity=0.245 Sum_probs=259.4
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccc-cHHHHH
Q 001855 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLH 186 (1004)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~ 186 (1004)
+++.|.. .+...-..++.+|..+.....+....+++.+.|...+.++++.+|..++..++.+.+........ .-+.++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 6777776 45555677888999998876664457889999999999999999999999998887654332111 125688
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHH
Q 001855 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1004)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 266 (1004)
+.+..++.++ +..|...|+++|..+...-.. ....+.. ..+..+...+...+..+|..+++++..++...++.+
T Consensus 122 ~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~--~~~l~~~---~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 122 PLIIQCLRDP-DLSVAKAAIKALKKLASHPEG--LEQLFDS---NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHhCCchh--HHHHhCc---chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 8999999998 999999999999999875211 1111111 225556666655578899999999999998887776
Q ss_pred HHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCccccCCC
Q 001855 267 RRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAE 343 (1004)
Q Consensus 267 ~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1004)
..... .+++.++..+.+ .|.-++..+++++..++.. +. ...|+ ..+++.+...+.....|+.
T Consensus 196 ~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~----~~----g~~yL~~~gi~~~L~~~l~~~~~dp~----- 260 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAET----PH----GLQYLEQQGIFDKLSNLLQDSEEDPR----- 260 (503)
T ss_pred HHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcC----hh----HHHHHHhCCHHHHHHHHHhccccCCc-----
Confidence 55443 478877776643 4566899999999999983 21 11233 2377777777765543320
Q ss_pred CCCccccCCccc-chHHHHHHHHHHhcCCC---cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH--HH----H
Q 001855 344 TEDEDAGESSNY-SVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VM----V 413 (1004)
Q Consensus 344 ~~~~d~~~~~~~-~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~----~ 413 (1004)
-.... ......++.++.. .+. ...|.++..+...+.+.+...+.+|+.++|.++..... .+ .
T Consensus 261 -------~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~ 332 (503)
T PF10508_consen 261 -------LSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQG 332 (503)
T ss_pred -------ccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 01111 1123455555553 222 23466777777778889999999999999999865433 22 1
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhhh----hhhHH-HHHhhcCCCCChhHHHHH
Q 001855 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFH----PQVLP-ALAGAMDDFQNPRVQAHA 481 (1004)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~----~~ll~-~l~~~l~~~~~~~v~~~a 481 (1004)
+.+..++..+..........+|..++.+++.+.....+ .+...++ ..-.. .++..++. +-+++|.++
T Consensus 333 ~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-PF~elr~a~ 411 (503)
T PF10508_consen 333 PAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-PFPELRCAA 411 (503)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchHHHHHH
Confidence 23455667777777777888999999999999654432 1111111 11111 45555666 668999999
Q ss_pred HHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001855 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1004)
Q Consensus 482 ~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 533 (1004)
...|..++..-..-...--.+.+++.++.--...+...++.=+.++..++..
T Consensus 412 ~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 412 YRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999865321111122344555555544444555666556666666543
No 50
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1e-05 Score=92.00 Aligned_cols=653 Identities=16% Similarity=0.195 Sum_probs=329.4
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001855 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1004)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1004)
...|..++|+++.+++.+.........+...-..+++.++.+++...+. ...+.++.-+..+=|. +..+...+..
T Consensus 60 QeqP~LLDp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK-~v~k~fPh~V~~Le~i-l~lL~~~nps--- 134 (1133)
T KOG1943|consen 60 QEQPHLLDPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYK-AVLKLFPHQVSDLEPI-LDLLERQNPS--- 134 (1133)
T ss_pred hhchhhccchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccch-hhHHhCCcHHHHHHHH-HHHHhccCcc---
Confidence 4558888999999999888776544445555566788889998863221 1223344333333222 2223211100
Q ss_pred cCCCCCCccccCCcccchHHHHHHHHHHhc---------C------CCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 001855 340 HSAETEDEDAGESSNYSVGQECLDRLAIAL---------G------GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQI 404 (1004)
Q Consensus 340 ~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~---------~------~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l 404 (1004)
+.+.|....-.+--|+..+ . +..+...++.++...+.+ +|..|.+|..+++.+
T Consensus 135 -----------s~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~-~~~~r~~aalllsk~ 202 (1133)
T KOG1943|consen 135 -----------SFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLIS-SGILRRSAALLLSKL 202 (1133)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhc-cchhHHHHHHHHHHH
Confidence 1112222222222222110 0 111233344444444444 447777777777776
Q ss_pred HhhcHHHHHHhHHHHHHHHHhhCCCCChh--HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCC-hhHHHHH
Q 001855 405 AEGCAKVMVKNLEQVLSMVLNSFRDPHPR--VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN-PRVQAHA 481 (1004)
Q Consensus 405 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~v~~~a 481 (1004)
..... ..+.+..++.-++.+-+...++ ..-..+.++..+.+..+-....+|....+..+-..--+..+ .-+|+--
T Consensus 203 ~sR~D--~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKll 280 (1133)
T KOG1943|consen 203 FSRTD--VKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLL 280 (1133)
T ss_pred ccccc--HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHH
Confidence 64322 1123444444455444444333 44455566666665554333234444444333222111011 1222223
Q ss_pred HHHHHHHh---------------------hcC------------------CcccccCchHHHHHHHHHHhhcCChhHHHH
Q 001855 482 ASAVLNFS---------------------ENC------------------TPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1004)
Q Consensus 482 ~~~l~~l~---------------------~~~------------------~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~ 522 (1004)
+..+.++- .++ +.+.+..+++.+++.|++.+.+.+..+|-.
T Consensus 281 vKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWS 360 (1133)
T KOG1943|consen 281 VKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWS 360 (1133)
T ss_pred HHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHH
Confidence 33332211 110 012234567788888999999999999999
Q ss_pred HHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhh-hHHHHHHHHHHHhc-
Q 001855 523 ALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD-DAKQVMEVLMSLQG- 600 (1004)
Q Consensus 523 a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~-~~~~i~~~l~~l~~- 600 (1004)
+...+|.+....+.. ..++++..++..+.-.+++..|. .++-+++.++.. ....| -++.++++++.-..
T Consensus 361 aAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r---GlLlps~l~dVvplI~kaL~Y 431 (1133)
T KOG1943|consen 361 AAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR---GLLLPSLLEDVVPLILKALHY 431 (1133)
T ss_pred HHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhhh
Confidence 999999999888744 44555555555544333344454 356677777643 11222 35566666665221
Q ss_pred -C---CCCCCCchhhHHHHHHHHHHhHhc-cCcccchhhhhHHHHHHcccCCCccccCCCCCccccc-----CCCcccch
Q 001855 601 -S---QMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIED-----SDDDSMET 670 (1004)
Q Consensus 601 -~---~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 670 (1004)
. ......-+|.++.-.+-.+++++. .+++|++..+.+.|+-..-.|+.+.++.....+-.|. .-...++.
T Consensus 432 d~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~L 511 (1133)
T KOG1943|consen 432 DVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISL 511 (1133)
T ss_pred hhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhh
Confidence 1 111223466655444444666664 4588999999999998887787766554311110000 00011110
Q ss_pred hhcCCceeeeechhH--HHHHHHHHHHHHHHHHhcccccccHHHHHHHhccc-cCccCCHHHHHHHHHhHHHHHHHHHHH
Q 001855 671 ITLGDKRIGIKTSVL--EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL-LKFYFHEEVRKAAVSAMPELLRSAKLA 747 (1004)
Q Consensus 671 ~~~~~~~~~v~~~~~--~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~ 747 (1004)
+. ...+. ..+..+..-+.... ..|..|.+.+++.++.. +. ..+..+|..++.+|..+....
T Consensus 512 is--------~~dy~sV~~rsNcy~~l~~~i----a~~~~y~~~~f~~L~t~Kv~-HWd~~irelaa~aL~~Ls~~~--- 575 (1133)
T KOG1943|consen 512 IS--------TIDYFSVTNRSNCYLDLCVSI----AEFSGYREPVFNHLLTKKVC-HWDVKIRELAAYALHKLSLTE--- 575 (1133)
T ss_pred hh--------hcchhhhhhhhhHHHHHhHHH----HhhhhHHHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHHhh---
Confidence 00 00000 11111111122222 23666777777776654 44 358899999999998876543
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHH
Q 001855 748 IEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL--LDEGQVRSIVDEIKQVITASSSR 825 (1004)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~ 825 (1004)
+++ +.+.++|+++.... ..+...+--..-+.++++..+-.. +.....+.-+..+...+...+.+
T Consensus 576 ----------pk~---~a~~~L~~lld~~l-s~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~ 641 (1133)
T KOG1943|consen 576 ----------PKY---LADYVLPPLLDSTL-SKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDR 641 (1133)
T ss_pred ----------HHh---hcccchhhhhhhhc-CCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHH
Confidence 332 33455677766543 335556655666666666554221 11111222233322223332222
Q ss_pred HHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH-HHHhHhhhhcCCCCHHHHHHHHH
Q 001855 826 KRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDKTAEERRIAIC 904 (1004)
Q Consensus 826 ~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~r~~al~ 904 (1004)
..++. ...-++...+..+..+...-..-+..++.. +.-.+...+ ++++ ..|..++.
T Consensus 642 ~~~rg---------------------~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~~n-~i~~~av~ 698 (1133)
T KOG1943|consen 642 YFYRG---------------------QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TLPN-QIRDAAVS 698 (1133)
T ss_pred Hhccc---------------------hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cchH-HHHHHHHH
Confidence 21210 011233344444444444333222223222 333333333 3344 78889999
Q ss_pred HHHHHHHHhhhhHHhhhH-hHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhcccchHHHHHHHH-HHHHHhhcCCCCCCc
Q 001855 905 IFDDVAEQCREAALKYYE-TYLPFLLEACNDE-NQDVRQAAVYGLGVCAEFGGSVVKPLVGEAL-SRLNVVIRHPNALQP 981 (1004)
Q Consensus 905 ~l~~l~~~~~~~~~~~~~-~l~~~~~~~l~~~-~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l-~~L~~~l~~~~~~~~ 981 (1004)
.+++++...-.. .++.. .++...++.+++. +..+|+--..++|.+... .+.-++++.+ ..+.... |. .
T Consensus 699 av~~l~s~y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~---~i~~~~q~~lc~~~l~~~--p~--d- 769 (1133)
T KOG1943|consen 699 AVSDLVSTYVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSE---LIHRHLQEKLCKLVLELL--PS--D- 769 (1133)
T ss_pred HHHHHHHHHHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHH---hhchHHHHHHHHHHhccC--cc--c-
Confidence 999987663221 22222 4777788888876 677887777777776643 2222333333 3333322 21 1
Q ss_pred hhhhhHHHHHHHHHHHHhhhh
Q 001855 982 ENLMAYDNAVSALGKICQLFL 1002 (1004)
Q Consensus 982 ~~~~~~~na~~a~~~l~~~~~ 1002 (1004)
.....|.+.+.++.+++....
T Consensus 770 ~~a~aR~~~V~al~~v~~~~~ 790 (1133)
T KOG1943|consen 770 AWAEARQQNVKALAHVCKTVT 790 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 167899999999999987543
No 51
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=99.14 E-value=3.7e-05 Score=85.93 Aligned_cols=234 Identities=16% Similarity=0.139 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHH-HHcCCCCCCCHHHHHH
Q 001855 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA-IEKGLAPGRNESYVKQ 763 (1004)
Q Consensus 685 ~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~ 763 (1004)
.+..+.|+..+.++.+..-..-.|-...+...++..++ ++++...+++++.-+..-+... ..+|.+ ....-|-++
T Consensus 788 ~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a-~~riLykQR 863 (1030)
T KOG1967|consen 788 LDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHA-EPRILYKQR 863 (1030)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhcccc-chhHHHHHH
Confidence 45567788889988887755555666666777777776 4677788888877665433222 223322 223467788
Q ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHh
Q 001855 764 LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEES 843 (1004)
Q Consensus 764 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~ 843 (1004)
++..++|.+.+.+... ....+...+.+|.+++.......-.+.++.+++.+.+.|.- .
T Consensus 864 fF~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~--------------~------- 921 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM--------------P------- 921 (1030)
T ss_pred HHHhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC--------------C-------
Confidence 9999999999988733 34566678889999988654322222344455544443321 1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCC--CHHHHHHHHHHHHHHHHHhh-hhHHhh
Q 001855 844 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK--TAEERRIAICIFDDVAEQCR-EAALKY 920 (1004)
Q Consensus 844 ~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~~~r~~al~~l~~l~~~~~-~~~~~~ 920 (1004)
+-.++-....++..+.+..+.-...|+..+.|.++..-.+.. ...+|..|+.+++.+.+..+ ..+.+|
T Consensus 922 ---------D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f 992 (1030)
T KOG1967|consen 922 ---------DVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF 992 (1030)
T ss_pred ---------ccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc
Confidence 122445678889999999998888999999999988753322 26789999999999999655 457789
Q ss_pred hHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 001855 921 YETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1004)
Q Consensus 921 ~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1004)
-+.++.++.+.|.|+...||..|+.+=+.+...
T Consensus 993 r~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 993 RPLVLRALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred cHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999999987776544
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.3e-07 Score=102.62 Aligned_cols=452 Identities=14% Similarity=0.175 Sum_probs=280.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHH---HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSL---TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~---~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
-|-.+..+.-+.|.++++-..-+|-++.+.+|+-. +..+-.-| .++|+.+|-.|...|..+- -+.+.|
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L-~DpN~LiRasALRvlSsIR-------vp~IaP- 142 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL-KDPNQLIRASALRVLSSIR-------VPMIAP- 142 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh-cCCcHHHHHHHHHHHHhcc-------hhhHHH-
Confidence 45556777778888888888888888776566532 12222222 3678888888887775532 122222
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1004)
|.-..++-...++.+.||+.+|.+|-++-+.+. ++..++...+..++.+.++.+.-.|+.++..+|-.--+-+.
T Consensus 143 ----I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH 216 (968)
T KOG1060|consen 143 ----IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH 216 (968)
T ss_pred ----HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh
Confidence 222222333335899999999999999987543 46679999999999999999999999999988876444444
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh-cCc----------c-------------hHhHHHhhHHHHHHH
Q 001855 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL-TSS----------A-------------DRDRFQDLLPLMMRT 235 (1004)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~-~~~----------~-------------~~~~~~~~~~~~l~~ 235 (1004)
.++..+..++.+.=..+ +...++.|...+... .++ . .+-....=+..+++.
T Consensus 217 knyrklC~ll~dvdeWg-----QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEWG-----QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred HHHHHHHhhccchhhhh-----HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHh
Confidence 45555555544322221 234555555554431 110 0 000001113356666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcc
Q 001855 236 LTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKL 315 (1004)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 315 (1004)
...++++.++.+..++++++..++-.. .+..|+..++..+.. ...++...+..+..++.. .|.+ +
T Consensus 292 tkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~---~~~l---F 356 (968)
T KOG1060|consen 292 TKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISIK---RPTL---F 356 (968)
T ss_pred ccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhc---chhh---h
Confidence 666778889999999999998876432 244556666665533 455666677777777762 2322 2
Q ss_pred hhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHH
Q 001855 316 PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHH 395 (1004)
Q Consensus 316 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 395 (1004)
.||+.+++-. .. |+ ......-.++|..|+. ..-+..+++.++..+++++...-.
T Consensus 357 ~P~lKsFfv~-------ss-Dp--------------~~vk~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa 410 (968)
T KOG1060|consen 357 EPHLKSFFVR-------SS-DP--------------TQVKILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAA 410 (968)
T ss_pred hhhhhceEee-------cC-CH--------------HHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHH
Confidence 2333332211 11 10 0011112334444443 455778889999999998877777
Q ss_pred HHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCCh
Q 001855 396 AALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP 475 (1004)
Q Consensus 396 aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 475 (1004)
+++.+||..+.... ..-+..+..++..++..+..|...+...|..+.+.-+..- -.++..+.+.+....-+
T Consensus 411 ~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-----~~ii~~La~lldti~vp 481 (968)
T KOG1060|consen 411 AAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-----LEILFQLARLLDTILVP 481 (968)
T ss_pred HHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-----HHHHHHHHHHhhhhhhh
Confidence 77888887765543 3445677777888877788899999999999887544322 23444444444332335
Q ss_pred hHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH
Q 001855 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1004)
Q Consensus 476 ~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (1004)
..|...+|.++..++.. ....++++..+.+.+.+....+|-+++.....+.....++ ...+..+.+++.
T Consensus 482 ~ARA~IiWLige~~e~v-----pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~Yv~~L~ 550 (968)
T KOG1060|consen 482 AARAGIIWLIGEYCEIV-----PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQYVFELA 550 (968)
T ss_pred hhhceeeeeehhhhhhc-----chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHHHHHHHh
Confidence 66777778888877653 3566888999999999999999988888776665444333 334444444443
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.12 E-value=5e-07 Score=101.54 Aligned_cols=425 Identities=16% Similarity=0.198 Sum_probs=250.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--hHH-HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDP--DSL-TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p--~~~-~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
.+...++.+.+. +.|-++...++....+.+ +.+ ...++..+.++ +.+.-..+.-+|++++... -+..
T Consensus 4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-------~~~~ 73 (503)
T PF10508_consen 4 WINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-------SPDS 73 (503)
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-------CHHH
Confidence 355666666554 445555555543222122 111 12355555544 4444466777888888653 1233
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC---CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 176 (1004)
....+...+..+|.+ +++.||..++..++.++++.... -.-.++++.+..++.+++..+...|..+|..+++.-..
T Consensus 74 l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 74 LLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 366777888899987 79999999999999988653211 13367999999999999999999999999999875221
Q ss_pred hcccc-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 001855 177 TLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTLTESLNNGNEATAQEALEL 254 (1004)
Q Consensus 177 ~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~ 254 (1004)
+... -+.+.+.+...+..+ +..+|..++.++..+...- .+.+..... .+++.+...+.++|.-++..++++
T Consensus 153 -~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S-----~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 153 -LEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHS-----PEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred -HHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcC-----HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 1111 112256667777765 7789999999888887642 222221111 255566666667788899999999
Q ss_pred HHHHHccchHHHHHhHH--HHHHHHHHhhcCCCcch---HHH-HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH
Q 001855 255 LIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEE---GTR-HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (1004)
Q Consensus 255 L~~l~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~---~vr-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (1004)
|..++... .-. .++. .+++.+...+.+.+.++ .+. ...+.++..++.. .| +.+...+|.++.
T Consensus 226 l~~La~~~-~g~-~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~-------~~v~~~~p~~~~ 293 (503)
T PF10508_consen 226 LSELAETP-HGL-QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SP-------QEVLELYPAFLE 293 (503)
T ss_pred HHHHHcCh-hHH-HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---Ch-------HHHHHHHHHHHH
Confidence 99999833 222 2222 46666666654443333 111 2223555555542 22 122223333333
Q ss_pred hhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCc--------chHHHHHHHHHhhcCCChhHHHHHHHH
Q 001855 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT--------IVPVASEQLPAYLAAPEWQKHHAALIA 400 (1004)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~~~~~~~r~aal~~ 400 (1004)
.+....+. .+...+..|.++++.++....++. ....++..+.....+.....|..++.+
T Consensus 294 ~l~~~~~s-------------~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 294 RLFSMLES-------------QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred HHHHHhCC-------------CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 22211110 022345567777777765432222 233455555556666777899999999
Q ss_pred HHHHHhhcHH----HHHHhHHHH--------HH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001855 401 LAQIAEGCAK----VMVKNLEQV--------LS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1004)
Q Consensus 401 l~~l~~~~~~----~~~~~l~~i--------~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~ 467 (1004)
++.+.....+ .+....... .. .++..++.+-|.+|.++...+..++.+-.....-...+.++..++.
T Consensus 361 l~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 361 LASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 9999653321 111111111 12 6667778889999999999999998754221111235667777776
Q ss_pred hcCCCCChhHHHHHHHHHHHHhhc
Q 001855 468 AMDDFQNPRVQAHAASAVLNFSEN 491 (1004)
Q Consensus 468 ~l~~~~~~~v~~~a~~~l~~l~~~ 491 (1004)
.-.+ .++..+..=...+..+.+.
T Consensus 441 r~~E-~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 441 RSTE-TTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHhc
Confidence 6666 5666655555555555543
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=1.4e-08 Score=122.91 Aligned_cols=275 Identities=17% Similarity=0.179 Sum_probs=188.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHh
Q 001855 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1004)
Q Consensus 144 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 223 (1004)
-++.|.+.+.++++.+|..|+..|+.+.. +..++.|...|.|+ ++.||..|+.+|..+......
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCc-----
Confidence 35677888889999999999999986542 34566777888887 999999999999887653311
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001855 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 224 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1004)
.+.+...++++++.+|..++..|..+..... . .++..+ .+.+..+|..|+..+..+-.
T Consensus 686 ---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~----~l~~~L--~D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 686 ---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------A----LFAAAL--GDPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred ---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H----HHHHHh--cCCCHHHHHHHHHHHhcccC
Confidence 1133344566789999999999887642111 1 223334 45678899888877665421
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHH
Q 001855 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1004)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (1004)
+ +. +...+.+. +...+..+...|..+...- +...+.+.
T Consensus 744 -----~----------~~----l~~~l~D~-----------------~~~VR~~aa~aL~~~~~~~------~~~~~~L~ 781 (897)
T PRK13800 744 -----V----------ES----VAGAATDE-----------------NREVRIAVAKGLATLGAGG------APAGDAVR 781 (897)
T ss_pred -----c----------HH----HHHHhcCC-----------------CHHHHHHHHHHHHHhcccc------chhHHHHH
Confidence 0 11 12222111 2234555556665554211 11245566
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001855 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1004)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 463 (1004)
..++|+++.+|.+|+.+|+.+... +.+.+.+...+.|+++.||..|..+|+.+.. +..++
T Consensus 782 ~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~ 841 (897)
T PRK13800 782 ALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVP 841 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHH
Confidence 788899999999999999987532 1223456778899999999999999987541 23457
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001855 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1004)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~ 529 (1004)
.|...|+| +++.||..|..+|..+ . --+...+.|...+++.+..||..+..+|..
T Consensus 842 ~L~~~L~D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 842 ALVEALTD-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 88888899 9999999999999985 1 113456777788899999999999888763
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.2e-06 Score=95.49 Aligned_cols=383 Identities=14% Similarity=0.155 Sum_probs=220.6
Q ss_pred HHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHH
Q 001855 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (1004)
Q Consensus 107 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 186 (1004)
.|.+.|.+..+...+.+.-.+|+.||+. ....+++|.......+.+.++|.....-|-..++.-++.- --=+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA----LLSI 110 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA----LLSI 110 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce----eeeH
Confidence 3556676666777777788888888874 3578899999999999999888766555554555433321 1113
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHH
Q 001855 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1004)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 266 (1004)
..|.+.|+|+ ++-+|..|++.|..+=- ..+.|.++-++.++..+..+-+|..|.-.+..+-+..++.-
T Consensus 111 ntfQk~L~Dp-N~LiRasALRvlSsIRv-----------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKDP-NQLIRASALRVLSSIRV-----------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcCC-cHHHHHHHHHHHHhcch-----------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 5677888998 99999999988866432 23456778888888888888999999988888876655433
Q ss_pred HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhc--cc---hhhhcchh--hHHH--HHHHHHHhhcCCCCCc
Q 001855 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER--AP---GMMRKLPQ--FINR--LFAILMSMLLDIEDDP 337 (1004)
Q Consensus 267 ~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~~---~~~~~~~~--~~~~--l~~~l~~~l~~~~~~~ 337 (1004)
. .+.+++..++ . |.++-+.-.|.-.+..+|...-. .+ ..++-+++ -+.+ ++..+..+-...--+|
T Consensus 179 ~-qL~e~I~~LL---a--D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 179 D-QLEEVIKKLL---A--DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred H-HHHHHHHHHh---c--CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 2 3444444443 2 33555655555555555543100 00 00000000 0000 1222222211110011
Q ss_pred cccCCCCCCccccCCcccchHHHHHHHHHHhcCC---CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 001855 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1004)
Q Consensus 338 ~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1004)
|..+. .-++. .+.. ..-......-++ +.=...++.....++.+.+..+-.+++.++-.++...
T Consensus 253 -~~~~~-~~e~n----~~~~--~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------ 318 (968)
T KOG1060|consen 253 -TVVDS-SLEDN----GRSC--NLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------ 318 (968)
T ss_pred -ccccc-ccccC----cccc--cccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------
Confidence 00000 00000 0000 000000000011 1223345666667777888888887777777766432
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-----------------------------HhhhhhhhHHHH
Q 001855 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-----------------------------QNQFHPQVLPAL 465 (1004)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------~~~~~~~ll~~l 465 (1004)
....+...++..|. .++.+|...+..+..++..-+.-| .......+++.+
T Consensus 319 ~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 319 QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 23344555555443 345566666666666654332111 012346677777
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001855 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
...+++ .+..+...+..+++....... ..-++++..|+.++.+.+..|-..+...|..+...-+.
T Consensus 398 q~YI~s-~d~~faa~aV~AiGrCA~~~~-----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 398 QTYIKS-SDRSFAAAAVKAIGRCASRIG-----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred HHHHhc-CchhHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 777777 555677778888888765554 44578889999999999888888888888888776554
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.10 E-value=1e-08 Score=123.90 Aligned_cols=273 Identities=19% Similarity=0.215 Sum_probs=187.4
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHH
Q 001855 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1004)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l 185 (1004)
..|++.|.+ +++.||+.++..|+.+. -+..++.|.+.+.++++.+|..++..|+.+.+..+.
T Consensus 624 ~~L~~~L~D-~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 624 AELAPYLAD-PDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 356667765 79999999999999653 145789999999999999999999999877543221
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHH
Q 001855 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1004)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 265 (1004)
.+.+...|.++ ++.||..|+.+|..+-.. .. ..+...+.++++.+|..++..|..+-. .
T Consensus 686 ~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~-----~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 686 APALRDHLGSP-DPVVRAAALDVLRALRAG-----DA-----------ALFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred hHHHHHHhcCC-CHHHHHHHHHHHHhhccC-----CH-----------HHHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 13455667776 999999999988875311 11 123346678999999999999987522 1
Q ss_pred HHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCC
Q 001855 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 345 (1004)
Q Consensus 266 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 345 (1004)
+.++..+ .|.+..+|..+...|..+... . ...++.+...+.+.
T Consensus 745 ---------~~l~~~l--~D~~~~VR~~aa~aL~~~~~~---~-----------~~~~~~L~~ll~D~------------ 787 (897)
T PRK13800 745 ---------ESVAGAA--TDENREVRIAVAKGLATLGAG---G-----------APAGDAVRALTGDP------------ 787 (897)
T ss_pred ---------HHHHHHh--cCCCHHHHHHHHHHHHHhccc---c-----------chhHHHHHHHhcCC------------
Confidence 1123334 456889999999888777541 0 11133344333221
Q ss_pred CccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh
Q 001855 346 DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN 425 (1004)
Q Consensus 346 ~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~ 425 (1004)
+...+..+...|..+ -. . +.+.+.+...+.+++|.+|.+|+.+|+.+.. +..++.|..
T Consensus 788 -----d~~VR~aA~~aLg~~---g~-~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 788 -----DPLVRAAALAALAEL---GC-P---PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred -----CHHHHHHHHHHHHhc---CC-c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 112333444444433 21 1 1223446678899999999999999987642 234577888
Q ss_pred hCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHH
Q 001855 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1004)
Q Consensus 426 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~ 487 (1004)
.|+|+++.||..|.++|+.+. . -+...+.+...++| +++.||..|..+|..
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~--~--------~~~a~~~L~~al~D-~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWP--G--------DPAARDALTTALTD-SDADVRAYARRALAH 896 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccC--C--------CHHHHHHHHHHHhC-CCHHHHHHHHHHHhh
Confidence 899999999999999999961 1 12346667788888 899999999999864
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.3e-06 Score=95.72 Aligned_cols=428 Identities=15% Similarity=0.218 Sum_probs=254.7
Q ss_pred CcchHHHHHH----HhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001855 140 GWPELLPFMF----QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1004)
Q Consensus 140 ~~~~ll~~L~----~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1004)
.-.+++=.+. +-+++++--+...|+-+++.++.. + ..+.+.|-+...++.. ++.||+.|+-|...++..
T Consensus 100 E~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---E---mardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 100 ERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---E---MARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRK 172 (866)
T ss_pred cchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---H---HhHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHc
Confidence 4445444444 444556656667788888877652 2 4566777777788887 999999999999999986
Q ss_pred hcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchH---HHHHhHHHHHHHHHHhhcCC--------
Q 001855 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIAEAE-------- 284 (1004)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~i~~~l~~~~~~~-------- 284 (1004)
. ++ ++..++......+.+.+.-+-..++..+.++++..++ .+.+.+++++..+-++....
T Consensus 173 ~-----P~----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~ 243 (866)
T KOG1062|consen 173 V-----PD----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVH 243 (866)
T ss_pred C-----ch----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCcc
Confidence 4 22 2334555555566677888888889999999888554 34444555555544443211
Q ss_pred -CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHH
Q 001855 285 -SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD 363 (1004)
Q Consensus 285 -~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~ 363 (1004)
-.++-+....+.++.-+... . ++.-+.+...+-+.....+.. .........+|+.
T Consensus 244 gi~dPFLQi~iLrlLriLGq~---d-------~daSd~M~DiLaqvatntdss--------------kN~GnAILYE~V~ 299 (866)
T KOG1062|consen 244 GISDPFLQIRILRLLRILGQN---D-------ADASDLMNDILAQVATNTDSS--------------KNAGNAILYECVR 299 (866)
T ss_pred CCCchHHHHHHHHHHHHhcCC---C-------ccHHHHHHHHHHHHHhccccc--------------ccchhHHHHHHHH
Confidence 12344566667766666552 1 111222222222222222110 0111223456666
Q ss_pred HHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 001855 364 RLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIG 443 (1004)
Q Consensus 364 ~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 443 (1004)
.+....+...+....++.+..++.+.+-..|+.|+..|..++..-+.....| -..++.+|+|+++.+|..|+...-
T Consensus 300 TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~ 375 (866)
T KOG1062|consen 300 TIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSY 375 (866)
T ss_pred HHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHH
Confidence 6665555456666778888999999999999999999999988766544444 356677899999999999999887
Q ss_pred HhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHH
Q 001855 444 QLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA 523 (1004)
Q Consensus 444 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a 523 (1004)
.+.. ......++..++..|.. .+++.+.....-+..+++.+.++ -..|++.++..+ .....-|+..+
T Consensus 376 ~lvn-------~~Nv~~mv~eLl~fL~~-~d~~~k~~~as~I~~laEkfaP~-k~W~idtml~Vl----~~aG~~V~~dv 442 (866)
T KOG1062|consen 376 ALVN-------ESNVRVMVKELLEFLES-SDEDFKADIASKIAELAEKFAPD-KRWHIDTMLKVL----KTAGDFVNDDV 442 (866)
T ss_pred HHhc-------cccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcCCc-chhHHHHHHHHH----Hhcccccchhh
Confidence 7765 34566777777888777 67889999999999999988865 356766555444 33344455544
Q ss_pred HHHHHHHHHHhHhhhHhhH-hhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhh--C--h-hhhhhhHHHHHHHHHH
Q 001855 524 LTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV--G--K-DKFRDDAKQVMEVLMS 597 (1004)
Q Consensus 524 ~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~--~--~-~~~~~~~~~i~~~l~~ 597 (1004)
...+-.++.....+...|. ..++..+..... .+.+...+...+.=|||..+.-+ | . +-...--.+++..+..
T Consensus 443 ~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~--~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~ 520 (866)
T KOG1062|consen 443 VNNLLRLIANAFQELHEYAVLRLYLALSEDTL--LDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEK 520 (866)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHH
Confidence 5444444433211111111 111111111100 01122223334556666655221 1 1 1112223556666666
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHhHhccC
Q 001855 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1004)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 627 (1004)
+.... ..+...+.+++.++..+...++..
T Consensus 521 v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 521 VLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred HHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 44322 233557888888888887666554
No 58
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=3.5e-08 Score=100.87 Aligned_cols=254 Identities=14% Similarity=0.146 Sum_probs=169.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhH
Q 001855 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1004)
Q Consensus 145 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 224 (1004)
++.|...+.+++..+|..+...|+.+.. +.+++.+...++++ ++.+|..++++|+.+-..- ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~------~~ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSK-NPIERDIGADILSQLGMAK------RC 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCc------cc
Confidence 5667777788999999999999986643 34556666677887 9999999999999864311 00
Q ss_pred HHhhHHHHHHHHHHH-HhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001855 225 FQDLLPLMMRTLTES-LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 225 ~~~~~~~~l~~l~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1004)
.. ..++.|... .+++++.+|..++..|+.+....... ...+++.+.... .|.+..+|..+...+..+..
T Consensus 88 ~~----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~--~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 QD----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITA--FDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred hH----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHh--hCCCHHHHHHHHHHHhccCC
Confidence 11 223333333 46788999999999999885433221 123343343333 34478899888877643321
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHH
Q 001855 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1004)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (1004)
+..++.++..+.+. ++..+..+...|+.+. .-.+...+.+.
T Consensus 158 ----------------~~ai~~L~~~L~d~-----------------~~~VR~~A~~aLg~~~------~~~~~~~~~L~ 198 (280)
T PRK09687 158 ----------------EAAIPLLINLLKDP-----------------NGDVRNWAAFALNSNK------YDNPDIREAFV 198 (280)
T ss_pred ----------------HHHHHHHHHHhcCC-----------------CHHHHHHHHHHHhcCC------CCCHHHHHHHH
Confidence 33555665555422 1224555555555541 11335666777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001855 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1004)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 463 (1004)
..+.|.+|.+|..|+.+||.+.. +..+|.|++.+.+++ +|..++.++|.+.. +..+|
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p 255 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLP 255 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHH
Confidence 78899999999999999998542 356788888888866 67778888888763 25677
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHH
Q 001855 464 ALAGAMDDFQNPRVQAHAASAVLN 487 (1004)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~~l~~ 487 (1004)
.+.+.++..+++.|+..+..++..
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhc
Confidence 888877632788999988888764
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.03 E-value=7.5e-07 Score=98.08 Aligned_cols=383 Identities=15% Similarity=0.161 Sum_probs=234.7
Q ss_pred HHHHHHhhcCCCh---hHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcc-
Q 001855 145 LPFMFQCVSSDSV---KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA- 220 (1004)
Q Consensus 145 l~~L~~~l~~~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~- 220 (1004)
+|.++..+.+.+. ...+..+.++..++..-. -+......++..+....+...+......++.++..++.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 3566676765543 455667777777766421 11123344555554444443356677788888888887654322
Q ss_pred --hHhHHHh--hHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHccchHHH-HHhHHHHHHHHHHhh-----c-CCCc
Q 001855 221 --DRDRFQD--LLPLMMRTLTESLNNGN---EATAQEALELLIELAGTEPRFL-RRQLVDVVGSMLQIA-----E-AESL 286 (1004)
Q Consensus 221 --~~~~~~~--~~~~~l~~l~~~l~~~~---~~~~~~a~~~L~~l~~~~~~~~-~~~~~~i~~~l~~~~-----~-~~~~ 286 (1004)
....+.+ ++|.+++.......... +.+...+..++..++...+..- ...+..++..++... . ....
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccc
Confidence 2233333 66777766665443222 3444455555555555443222 223444444443000 0 0000
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHH
Q 001855 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1004)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~ 366 (1004)
........+..+..+... .+... .+ +....++..++.......+ ...+..+.+++..+.
T Consensus 160 ~~~~~~~~~~l~~~il~~---l~~~~-~~-~~~~~ll~~l~~~~~~~~~----------------~~~~~~~~~~la~Lv 218 (415)
T PF12460_consen 160 ISEQQSRLVILFSAILCS---LRKDV-SL-PDLEELLQSLLNLALSSED----------------EFSRLAALQLLASLV 218 (415)
T ss_pred cccccccHHHHHHHHHHc---CCccc-Cc-cCHHHHHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHH
Confidence 001111222333333331 11000 11 1334455555554433321 124556778888888
Q ss_pred HhcCCCcchHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001855 367 IALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1004)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1004)
..++..+.+..++..+...+ .......|..++..+..++.+.--...+....++..++..+.+ +.+...++.+++-+
T Consensus 219 NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il 296 (415)
T PF12460_consen 219 NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGIL 296 (415)
T ss_pred cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhH
Confidence 87655555555665555555 4456677778887777777664322224455667777777877 66788888888877
Q ss_pred hhhhch------------hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhh
Q 001855 446 STDLGP------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1004)
Q Consensus 446 ~~~~~~------------~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~ 513 (1004)
....+. -+...++..++|.+++.... .+...+.....+|..++++.+.+.+.++++.++|.+++.++
T Consensus 297 ~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~ 375 (415)
T PF12460_consen 297 LSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLS 375 (415)
T ss_pred hcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Confidence 765321 11245789999999999888 55568888999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHH
Q 001855 514 NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1004)
Q Consensus 514 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (1004)
.++..++..++.++..+....++.+.+|++.++|.+.++
T Consensus 376 ~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 376 LPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988888889999999988763
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.01 E-value=4.2e-09 Score=86.79 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC
Q 001855 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1004)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 472 (1004)
.|.+++.+++.++.+++..+.++++.+++.++.++.|++++||..||.++..+++..++.+ -++++++++.+.+.+.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-
Confidence 5899999999999999999999999999999999999999999999999999999998888 57999999999999999
Q ss_pred CChhHHHHHHHHHHHHh
Q 001855 473 QNPRVQAHAASAVLNFS 489 (1004)
Q Consensus 473 ~~~~v~~~a~~~l~~l~ 489 (1004)
+++.||.+| ..|.+++
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998876 5555554
No 61
>PRK09687 putative lyase; Provisional
Probab=98.99 E-value=1.8e-07 Score=95.77 Aligned_cols=229 Identities=15% Similarity=0.111 Sum_probs=162.0
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
+.-.+..++..+.++|..+|..|...|.++.. +.. ...+..+ .++.++.+|..|+..|..+-... . .
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~~~-~~~l~~l-l~~~d~~vR~~A~~aLg~lg~~~-----~--~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG--QDV-FRLAIEL-CSSKNPIERDIGADILSQLGMAK-----R--C-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--chH-HHHHHHH-HhCCCHHHHHHHHHHHHhcCCCc-----c--c--
Confidence 44566777888889999999999999988775 343 3555554 46778999999999998864221 0 0
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1004)
.......|...+.+++++.||..++.+++.+.... + ...+.+++.+...+.++++.+|..+..+|+.+..
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~-~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------- 157 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-P-LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------- 157 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-c-ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------
Confidence 12233445555455689999999999999875422 1 2347788888888889999999999999975432
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
+..++.+..+++|+ ++.||..|+.+|+.+ . .. .. ...+.|...+.+.++.+|..|...|+.+.
T Consensus 158 ---~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~-~-~~---~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 ---EAAIPLLINLLKDP-NGDVRNWAAFALNSN-K-YD---NP--------DIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred ---HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC-C-CC---CH--------HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 35667888888997 999999999999987 1 11 11 34445666667899999999999998764
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001855 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1004)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 302 (1004)
. ...++.+++.+..+ .++..+++.+..+.
T Consensus 221 ~----------~~av~~Li~~L~~~----~~~~~a~~ALg~ig 249 (280)
T PRK09687 221 D----------KRVLSVLIKELKKG----TVGDLIIEAAGELG 249 (280)
T ss_pred C----------hhHHHHHHHHHcCC----chHHHHHHHHHhcC
Confidence 2 24555666665432 26666665555543
No 62
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.5e-06 Score=95.52 Aligned_cols=475 Identities=16% Similarity=0.159 Sum_probs=284.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHH
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~ 100 (1004)
-+..++.++...|-+.++-...+|....+..|+..+...-.++.+ ++++.+|.+|...+...-. +..
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----------~~i 118 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV-----------DKI 118 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee-----------hHH
Confidence 455566677777888999999999888887887654444444444 7889999999887755321 345
Q ss_pred HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh-hcc
Q 001855 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLT 179 (1004)
Q Consensus 101 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~-~~~ 179 (1004)
.+.+.+.+...+.+ .++.+|+.++.+++++.........-..+++.|..++.++++.+...|+.++..+.+.-++ ...
T Consensus 119 ~ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 66778888899987 6999999999999988765433234467899999999999999999999999999887653 222
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
.....+...++..++.- +.--+...++++ ..+.++.. .... .+++.+...++..+..+...+.+.+..++
T Consensus 198 ~l~~~~~~~lL~al~ec-~EW~qi~IL~~l---~~y~p~d~--~ea~----~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNEC-TEWGQIFILDCL---AEYVPKDS--REAE----DICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred cccHHHHHHHHHHHHHh-hhhhHHHHHHHH---HhcCCCCc--hhHH----HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 23445555555555544 333344444444 33433221 1122 35555555555667777788888888777
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001855 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1004)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1004)
......-...+..+-+.+..++. ..+++...++.-+.-+... .|. +...-+..++- . -.||.+
T Consensus 268 ~~~~~~~~~~~~K~~~pl~tlls---~~~e~qyvaLrNi~lil~~---~p~-------~~~~~~~~Ff~---k-ynDPiY 330 (734)
T KOG1061|consen 268 KYLKQVNELLFKKVAPPLVTLLS---SESEIQYVALRNINLILQK---RPE-------ILKVEIKVFFC---K-YNDPIY 330 (734)
T ss_pred HHHHHHHHHHHHHhcccceeeec---ccchhhHHHHhhHHHHHHh---ChH-------HHHhHhHeeee---e-cCCchh
Confidence 65554333333444444443332 1225555555444444431 221 11111111110 0 011100
Q ss_pred cCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001855 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1004)
Q Consensus 340 ~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1004)
....-.+++..++. +..++.++..+.+....-+..--..++.++|.++....+. ..+
T Consensus 331 --------------vK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~c 387 (734)
T KOG1061|consen 331 --------------VKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDC 387 (734)
T ss_pred --------------hHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhh
Confidence 00112344544442 3445556666776666667777777899999988765542 567
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccC
Q 001855 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1004)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~ 499 (1004)
++.++..++-....|.+.+...+..+....+.. .+.+++.+...+..-.+|+.|.+-.|.++...+.++
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP~~-----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~------ 456 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYPNK-----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIE------ 456 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCCCc-----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccC------
Confidence 777777777665556666666777766665532 356666666666554568888888888888876654
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHH
Q 001855 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~ 576 (1004)
-.+.+++.+++.+.+....|+...+.+.-.+.-..+. -.+..+..++..-. .+.+...+|.+++.-...+.
T Consensus 457 ~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~----~tq~~l~~vL~~~~--~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 457 NALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT----ETQELLQGVLPLAT--ADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc----cHHHHHHHHHhhhh--ccccChhhhhhHHHHHHHhh
Confidence 3355667777777776777765555544443333222 22233333333211 12234568888877666654
No 63
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.97 E-value=3.5e-08 Score=111.88 Aligned_cols=302 Identities=17% Similarity=0.224 Sum_probs=200.6
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC--cc
Q 001855 144 LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS--SA 220 (1004)
Q Consensus 144 ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~--~~ 220 (1004)
+++.+..++++= ..+.|..|+..|..+...+.++. .++.++|.++.++.|+ ...||..|+.+|..++..+.+ ..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcc
Confidence 566666666543 45678889999999998876653 5789999999999998 999999999999999987653 22
Q ss_pred hHhHHHhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001855 221 DRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1004)
Q Consensus 221 ~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~ 299 (1004)
+...|.+ ++++.|...+.+ ....+|.....+|..++...+.++.--.. +=. -...+. .+.+
T Consensus 500 daniF~e---YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~-~~~--~g~~n~--~nse---------- 561 (1431)
T KOG1240|consen 500 DANIFPE---YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQE-LRQ--AGMLND--PNSE---------- 561 (1431)
T ss_pred cchhhHh---hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHH-HHh--cccccC--cccc----------
Confidence 3333444 667777777776 45568888889999998877665442111 000 000111 1111
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHH
Q 001855 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1004)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 379 (1004)
...+ +............+-..+...+.+. +...+++..+.+..|+..+|....-..++
T Consensus 562 t~~~-----~~~~~~~~~L~~~V~~~v~sLlsd~-----------------~~~Vkr~Lle~i~~LC~FFGk~ksND~iL 619 (1431)
T KOG1240|consen 562 TAPE-----QNYNTELQALHHTVEQMVSSLLSDS-----------------PPIVKRALLESIIPLCVFFGKEKSNDVIL 619 (1431)
T ss_pred cccc-----cccchHHHHHHHHHHHHHHHHHcCC-----------------chHHHHHHHHHHHHHHHHhhhcccccchH
Confidence 0000 0000111112222222222222221 22244566677888999999777778899
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001855 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1004)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1004)
+++..+++|.+|..|-+-+..+.-++-..+.. ..-+-++|.+.++|.|..+.|-..|+.++..+++.- .+.+.+.-
T Consensus 620 shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~ 695 (1431)
T KOG1240|consen 620 SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVK 695 (1431)
T ss_pred HHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHH
Confidence 99999999999999998877776555433321 012346799999999999999999999999998741 22244556
Q ss_pred hhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCC
Q 001855 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1004)
Q Consensus 460 ~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 493 (1004)
+++..+.-.|-. +|.-+|.++|..+..+.+..+
T Consensus 696 ~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 696 DILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhh
Confidence 666666666666 889999999999999987765
No 64
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.9e-05 Score=83.24 Aligned_cols=268 Identities=12% Similarity=0.205 Sum_probs=173.4
Q ss_pred HHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh
Q 001855 162 SAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN 241 (1004)
Q Consensus 162 ~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 241 (1004)
.|+..|..+.. ++ ....+-+-+...|+.. .+.+|+.|+-.++.++..+ ++.+...+|.+ .+-+.
T Consensus 128 iAL~GLS~fvT---pd---LARDLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkY-----PeAlr~~FprL----~EkLe 191 (877)
T KOG1059|consen 128 LALSGLSCIVT---PD---LARDLADDVFTLLNSS-KPYVRKKAILLLYKVFLKY-----PEALRPCFPRL----VEKLE 191 (877)
T ss_pred heecccccccC---ch---hhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhh-----hHhHhhhHHHH----HHhcc
Confidence 35555554443 22 2344455555667776 8999999999999988765 45556655554 55566
Q ss_pred cCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHH
Q 001855 242 NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR 321 (1004)
Q Consensus 242 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 321 (1004)
++|+.+..+|+.++++++...|.-.-+..+.++..+.. . .+.-+-...+.++.++... .|. ...+
T Consensus 192 DpDp~V~SAAV~VICELArKnPknyL~LAP~ffklltt----S-sNNWmLIKiiKLF~aLtpl---EPR-------LgKK 256 (877)
T KOG1059|consen 192 DPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVT----S-SNNWVLIKLLKLFAALTPL---EPR-------LGKK 256 (877)
T ss_pred CCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhc----c-CCCeehHHHHHHHhhcccc---Cch-------hhhh
Confidence 89999999999999999999987766666666654432 2 2334555556667666552 332 3344
Q ss_pred HHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHh---cC---CCcchHHHHHHHHHhhcCCChhHHH
Q 001855 322 LFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA---LG---GNTIVPVASEQLPAYLAAPEWQKHH 395 (1004)
Q Consensus 322 l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~---~~---~~~~~~~l~~~l~~~l~~~~~~~r~ 395 (1004)
++|.+.+.|..+. .-....+|+..+... .| ........++.+..++.+.+...|+
T Consensus 257 Lieplt~li~sT~-------------------AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKY 317 (877)
T KOG1059|consen 257 LIEPITELMESTV-------------------AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKY 317 (877)
T ss_pred hhhHHHHHHHhhH-------------------HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHH
Confidence 5555554443210 111122333322211 11 1234455677778888999999999
Q ss_pred HHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCCh
Q 001855 396 AALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP 475 (1004)
Q Consensus 396 aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 475 (1004)
-++.+++.++...+..+..| -..++++|.|.++.+|-.|+..+-.++. .+.+..++..|+..+......
T Consensus 318 lgLlam~KI~ktHp~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVs-------kkNl~eIVk~LM~~~~~ae~t 386 (877)
T KOG1059|consen 318 LGLLAMSKILKTHPKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMVS-------KKNLMEIVKTLMKHVEKAEGT 386 (877)
T ss_pred HHHHHHHHHhhhCHHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHhccch
Confidence 99999999998877654433 4677889999999999999998877764 345677777777776552233
Q ss_pred hHHHHHHHHHHHHhh
Q 001855 476 RVQAHAASAVLNFSE 490 (1004)
Q Consensus 476 ~v~~~a~~~l~~l~~ 490 (1004)
..|...+.-+-.+|.
T Consensus 387 ~yrdell~~II~iCS 401 (877)
T KOG1059|consen 387 NYRDELLTRIISICS 401 (877)
T ss_pred hHHHHHHHHHHHHhh
Confidence 566655555555554
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.93 E-value=6.4e-08 Score=97.83 Aligned_cols=191 Identities=20% Similarity=0.319 Sum_probs=137.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001855 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1004)
+...+...-.+.+|..|..++.-+..++.+. ...+...+..++..+...+.|....|...|+.+++.++..++..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 3444544456789999999999999998876 22344555666788889999999999999999999999999998
Q ss_pred HHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHH-HHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001855 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVA 531 (1004)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i-~~~l~~~l~~~~~~vr~~a~~~l~~l~ 531 (1004)
+ .++.+.++|.+++.+.+ ++..++..|..+|..+++.++ +.+.+ ...+....++.++.+|..++.++..+.
T Consensus 88 ~-~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 88 F-EPYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp G-HHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8 88999999999999999 888999999999999998765 22334 677777889999999999999999998
Q ss_pred HHhH---hhhHh--hHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhC
Q 001855 532 DSSQ---EHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1004)
Q Consensus 532 ~~~~---~~~~~--~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~ 580 (1004)
...+ ..+.. +++.+.+.+...+.+ .+..+|..|-.++..+...+|
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~D----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLSD----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHTS----S-HHHHHHHHHHHHHHHHHH-
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCC
Confidence 8877 34433 457777877777643 456789999999999887777
No 66
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.91 E-value=0.00026 Score=81.89 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHH-----Hhhc----chHhHHHHHHHHHHHHHhcccCC
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQS-----IQLE----SAKSISKKLCDTVSELASNILPE 138 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~-----l~~~----~~~~vr~~~~~~l~~i~~~~~~~ 138 (1004)
+++.++|+-|++.++...+.+ ...++-+..+.+...++.. +.+. ....||...+++++.+.++..+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h----~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~- 162 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTH----GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE- 162 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHh----cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-
Confidence 788999999999999999988 4555554444444444332 2221 2347999999999999998766
Q ss_pred CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001855 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1004)
Q Consensus 139 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 216 (1004)
....+.++.+.+++..++|+.|++++..+........+.+...++.+++.+...+.|. +..||..|...+..+....
T Consensus 163 s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 163 SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHhhhhhHHH
Confidence 5777788888999888899999999999987766444444456788899999999998 9999999999988877654
No 67
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.89 E-value=6.5e-07 Score=87.53 Aligned_cols=358 Identities=14% Similarity=0.168 Sum_probs=218.8
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC
Q 001855 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1004)
Q Consensus 59 ~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~ 138 (1004)
+.|...+ .+.+-+.+..|..-+++.+++.. -+.+.+-....+...+++.+........+-.++-++..|++-....
T Consensus 74 p~lt~~l-~SdDie~q~qav~kFR~~LS~E~---~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQL-FSDDIEQQLQAVYKFRKLLSKET---SPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHH-hhhHHHHHHHHHHHHHHHhcccc---CCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 3444433 24456777778888999888752 3445555666777788888854345566778888999998754331
Q ss_pred C---CcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh---hcc--ccHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001855 139 N---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD---TLT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1004)
Q Consensus 139 ~---~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~---~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1004)
. .=..-+|.+++++.+++..+|+-++.+|+.++-.... .+. ..+..++.++. ++..+..+-..+.+.|+
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~---ss~~~ismlRn~TWtLS 226 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL---SSAIHISMLRNATWTLS 226 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH---hccchHHHHHHhHHHHH
Confidence 1 1135689999999999999999999999998765322 111 12333333333 22223466668889999
Q ss_pred HHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchH
Q 001855 211 NFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEG 289 (1004)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~ 289 (1004)
++...-..+-++..+.. .++.|..++.+.|+++...|++.+..+.....+.+...++ .+..-+...+.+ .+..
T Consensus 227 NlcRGknP~P~w~~isq----alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~--~sa~ 300 (526)
T COG5064 227 NLCRGKNPPPDWSNISQ----ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH--ESAK 300 (526)
T ss_pred HhhCCCCCCCchHHHHH----HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC--cccc
Confidence 98876543334544444 4445555666789999999999999887655544433222 111112222211 1111
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhc
Q 001855 290 TRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL 369 (1004)
Q Consensus 290 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~ 369 (1004)
+..-|+.....++ ...++ ... .+
T Consensus 301 iqtPalR~vGNIV-----------------------------TG~D~--------------QTq-------vi------- 323 (526)
T COG5064 301 IQTPALRSVGNIV-----------------------------TGSDD--------------QTQ-------VI------- 323 (526)
T ss_pred ccCHHHHhhcCee-----------------------------ecCcc--------------cee-------hh-------
Confidence 1111111111110 00000 000 00
Q ss_pred CCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001855 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1004)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1004)
+---.++.+...++++.-..|..+++.++.+..+..+.+...++ +++|.++..|..-+-.+|..|||+++.....
T Consensus 324 ----I~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 324 ----INCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ----eecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11124555666688888899999999999999988876655554 5789999999888899999999999987654
Q ss_pred h--chhHHhhh--hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC
Q 001855 449 L--GPDLQNQF--HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1004)
Q Consensus 449 ~--~~~~~~~~--~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 492 (1004)
. .|++ -.| .+.++..+...|.- .+.++...++.++..+++..
T Consensus 400 g~~~PD~-iryLv~qG~IkpLc~~L~~-~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 400 GLNRPDI-IRYLVSQGFIKPLCDLLDV-VDNKIIEVALDAIENILKVG 445 (526)
T ss_pred ccCCchH-HHHHHHccchhHHHHHHhc-cCccchhhhHHHHHHHHhhh
Confidence 3 1222 122 24556666666665 44456666788888887644
No 68
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.2e-05 Score=94.44 Aligned_cols=132 Identities=27% Similarity=0.418 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHh
Q 001855 34 TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ 113 (1004)
Q Consensus 34 ~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~ 113 (1004)
++++.|.+|.+.|.+++. .|+.+ .....++..+.++.+|++|..+|.+.++.+ |..++.+.+..+|...+....
T Consensus 24 ~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~----W~~~~~~~r~glk~~v~~~~~ 97 (1041)
T KOG2020|consen 24 GSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR----WNSLPVEERVGLKNYVLTLII 97 (1041)
T ss_pred cchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh----cccCCccccHHHHHHHHHHHh
Confidence 578999999999999999 78765 556667777889999999999999999998 999999999999998887665
Q ss_pred hc--------chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 001855 114 LE--------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1004)
Q Consensus 114 ~~--------~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 173 (1004)
.. ....++..++..+-.|++.+|| +.||+++|.+.+.... +...++.++.++..+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsEd 163 (1041)
T KOG2020|consen 98 EASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKT-SETVCELSMIILLLLSEE 163 (1041)
T ss_pred hcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhc-CcccchHHHHHHHHHHHH
Confidence 21 2456889999999999999999 7999999999998763 345556666666666664
No 69
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.88 E-value=0.00064 Score=80.53 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=83.4
Q ss_pred CCCChhHHH-HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHH
Q 001855 428 RDPHPRVRW-AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (1004)
Q Consensus 428 ~d~~~~vr~-~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~ 506 (1004)
.++...+|. +...+|..|+...|.-+..+|...+.|.+...-+......+....+..|...+.-.. ..=..++..+=+
T Consensus 1046 ~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~-~~sesfL~sLEe 1124 (1692)
T KOG1020|consen 1046 NEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVA-NPSESFLASLEE 1124 (1692)
T ss_pred hcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhc-cchHHHHHHHHH
Confidence 444555665 455667777777665553378888888887653331223344555555555554433 112356666667
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH---hhcCccc----chhhhHHHHHHHHHHHhh
Q 001855 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL---VNATDKS----NRMLRAKSMECISLVGMA 578 (1004)
Q Consensus 507 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l---~~~~~~~----~~~l~~~a~~~l~~l~~~ 578 (1004)
.|++.+-..+...-..+..|++.++....+.+ .....++..+.+.+ +...+++ ....-.+.+.++|.+++.
T Consensus 1125 ~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~-~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ry 1202 (1692)
T KOG1020|consen 1125 DLLKRIVKMGMATVVEAVSCLGSLATKRTDGA-KVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRY 1202 (1692)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHh
Confidence 77777777777777788899999988644332 12223333333322 2221122 223334567777777664
No 70
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.88 E-value=0.00015 Score=92.41 Aligned_cols=540 Identities=17% Similarity=0.211 Sum_probs=309.1
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001855 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1004)
..+..-...+.+++.+..-..|.+|...+..++...+....+++..++..+...+.|+++.+|..|+.++.......++.
T Consensus 130 ~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~ 209 (2341)
T KOG0891|consen 130 ELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQR 209 (2341)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhc
Confidence 34444555566666555666788999999999999999888999999999999999999999999999998877665543
Q ss_pred HH---hhhhhhhHHHHHhhcCCCCChh------------------------HHHHHHHHHHHHhh---------cCC---
Q 001855 453 LQ---NQFHPQVLPALAGAMDDFQNPR------------------------VQAHAASAVLNFSE---------NCT--- 493 (1004)
Q Consensus 453 ~~---~~~~~~ll~~l~~~l~~~~~~~------------------------v~~~a~~~l~~l~~---------~~~--- 493 (1004)
.. .+.+...+...-..+.. +... .+...+ .+.... ...
T Consensus 210 ~~~~~~~~~~rcvd~~~~~l~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~lk~~~i~~~l~~~~~~~ 286 (2341)
T KOG0891|consen 210 EAKLKPQWYQRCVDEARHGLSS-DGVKIHASLLVYNELLRISDPFLEKYDSTCVRQA--KGKLLKSIVIRMTLSQILPLL 286 (2341)
T ss_pred cchhhhHHHHHHHHhccccccc-hHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHhccccHHHHHHhccHHH
Confidence 20 11122222222222222 1100 111110 000000 000
Q ss_pred -----cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHH
Q 001855 494 -----PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKS 568 (1004)
Q Consensus 494 -----~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a 568 (1004)
...-..|+...+..++..+. .....++..++.++.+.+..+.+|...+...+...+....-..... -...
T Consensus 287 ~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 361 (2341)
T KOG0891|consen 287 AAFNPAKFQVKYLHTEMDHLLSILR----KEKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKF-EKSV 361 (2341)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhc-chhH
Confidence 00001234444444444443 1226778889999999998888888876665555443211001111 1235
Q ss_pred HHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHccc---
Q 001855 569 MECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQL--- 645 (1004)
Q Consensus 569 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~--- 645 (1004)
+.|++.++.++++..+......|+..+.. . ........++-.++...++--....+.++..+-..+..
T Consensus 362 ~~~~~~~~~a~~~~~~~~~~~~il~~~~~---~------~~~~~l~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~ 432 (2341)
T KOG0891|consen 362 FTCIGLLASALGPADQKDLNKDILEQMFK---C------TLSDSLLERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAF 432 (2341)
T ss_pred HHHHHHHhhccCHHHHHhHHHHHHHHHhc---C------CchHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccc
Confidence 78889898888866555444555554433 1 11234455555565554433222222222222222211
Q ss_pred -CCCc-cccCCCCCcccccCCCcccchhhcCCceeeeech-hHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccC
Q 001855 646 -KPDV-TITSADSDNEIEDSDDDSMETITLGDKRIGIKTS-VLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLK 722 (1004)
Q Consensus 646 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~ 722 (1004)
.+.. .+... ... .+...-+++ ..+.-..|.++++.+..... ....++..+++..+.
T Consensus 433 ~~~~~~~vl~~-------------~~~----p~~~~~~~~~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~--- 491 (2341)
T KOG0891|consen 433 IQPGQFTVLPK-------------LAI----PKAILQKTGDSTDDIQLAFKTLGGFKFSGY-SLTLFVQQCVDSYLE--- 491 (2341)
T ss_pred cCccccCccch-------------hcc----cchhhhhcccccHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHh---
Confidence 1110 00000 000 000000000 00113457777877765532 233344444444333
Q ss_pred ccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC
Q 001855 723 FYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL 802 (1004)
Q Consensus 723 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 802 (1004)
..++++|..+..++..++.....+.+. ++...+....++..++.....++++.++..++.++.+-.. +.
T Consensus 492 -~~~~e~r~~~~l~~~~ll~~~~~~~~~-------~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~---~~ 560 (2341)
T KOG0891|consen 492 -ADDSEIRKNAALTCCELLKYDIICSQT-------SPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFD---AQ 560 (2341)
T ss_pred -cccHHHHHHHHHHHHHHHhhhhhhhcc-------cchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchh---hh
Confidence 347899999988888888765432221 1212244566667777766677777777766666651110 10
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH
Q 001855 803 L-DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE 881 (1004)
Q Consensus 803 ~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 881 (1004)
+ .+.-+.-.+ ..+.. ..-..+..+...+|.++...+..+.|++..
T Consensus 561 laQ~~~lr~~~----~al~~------------------------------~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~ 606 (2341)
T KOG0891|consen 561 LAQPDLLRLLF----IALHD------------------------------ENFAIQELATVIIGRLSSYNPAYVLPSLRK 606 (2341)
T ss_pred hcCchhHHHHH----HHhhh------------------------------hhhhhHHhHHhhccccccccHHHHhHHHHH
Confidence 1 111111111 11100 112344557777888888888778888888
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHH
Q 001855 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPL 961 (1004)
Q Consensus 882 ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~ 961 (1004)
........+.-+.....+.....-...++......+.+|+..++..++..+.+++..+-.++..++|+++..+|..+..+
T Consensus 607 ~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~ 686 (2341)
T KOG0891|consen 607 TLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKW 686 (2341)
T ss_pred HHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhc
Confidence 77666665544444433444444555666666666788999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhh
Q 001855 962 VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 962 ~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~ 1000 (1004)
....++.+.+.+.+- .+..-|.++..++|+++..
T Consensus 687 ~~~~~~~~~~~l~~~-----s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 687 VDELFSLIIKMLQDQ-----SSLGKRLAALKALGQLESS 720 (2341)
T ss_pred cchHHHHHHHHHHHh-----hhhhchhHHHHHhhhhhcc
Confidence 778888888888754 3667788889999988754
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.88 E-value=1e-06 Score=100.52 Aligned_cols=290 Identities=18% Similarity=0.179 Sum_probs=186.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHh---H-HHH
Q 001855 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ---L-VDV 273 (1004)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~-~~i 273 (1004)
..+.|..|+..|..+..+..+ ... +..+++.+..++.++..++|..|+..|.+++..-.+.-... + .=+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d---e~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYl 508 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD---EVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYL 508 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch---HHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhh
Confidence 457788999999999887642 222 33555556667778899999999999998764321110000 1 112
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCc
Q 001855 274 VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1004)
Q Consensus 274 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~ 353 (1004)
++.+-.+.. +.....+|..-..++..+++. . ..|+......=...| .++++-.... + .
T Consensus 509 fP~L~~l~~-d~~~~~vRiayAsnla~LA~t---A-------~rFle~~q~~~~~g~---~n~~nset~~-------~-~ 566 (1431)
T KOG1240|consen 509 FPHLNHLLN-DSSAQIVRIAYASNLAQLAKT---A-------YRFLELTQELRQAGM---LNDPNSETAP-------E-Q 566 (1431)
T ss_pred hhhhHhhhc-cCccceehhhHHhhHHHHHHH---H-------HHHHHHHHHHHhccc---ccCccccccc-------c-c
Confidence 222222222 113455777777788877762 1 011111111100101 1111000000 0 0
Q ss_pred ccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001855 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1004)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1004)
.+..-.. .+...+-..+..++.++...+|.+-+..|..++...+.. ..-+-+++++...|+|+++.
T Consensus 567 ~~~~~~~------------~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~ 632 (1431)
T KOG1240|consen 567 NYNTELQ------------ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWR 632 (1431)
T ss_pred ccchHHH------------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHH
Confidence 0111111 122233344556778888999999999888877655431 12244789999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhh
Q 001855 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1004)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~ 513 (1004)
+|.+-+..|..++-..+..- .-+-++|.+.+.|.| +.+.|...|+.++..+++..-- -.+++-++++....++-
T Consensus 633 LR~aFfdsI~gvsi~VG~rs---~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll--~K~~v~~i~~~v~PlL~ 706 (1431)
T KOG1240|consen 633 LRGAFFDSIVGVSIFVGWRS---VSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGLL--RKPAVKDILQDVLPLLC 706 (1431)
T ss_pred HHHHHHhhccceEEEEeeee---HHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhccc--chHHHHHHHHhhhhhee
Confidence 99999999887777666531 345678999999999 8899999999999999986532 24788899999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhHh
Q 001855 514 NGKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 514 ~~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
.++.-+|..++..|..++...+.
T Consensus 707 hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 707 HPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred CchHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999887763
No 72
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.6e-07 Score=88.83 Aligned_cols=454 Identities=15% Similarity=0.162 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHhhhcCchHH-H---HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHH
Q 001855 37 EQRSEAELLFNLCKQQDPDSL-T---LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (1004)
Q Consensus 37 ~~r~~A~~~L~~~~~~~p~~~-~---~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l 112 (1004)
..|.+....|+.+...+.-.| . .-...++.-+.+...+..|++-+...+.+. ....+.+..+ .++-++
T Consensus 23 ~erEav~~ll~~lEd~~~i~fyS~~plraltvL~ySDnlnlqrsaalafAeitek~----vr~Vsres~e----pvl~ll 94 (550)
T KOG4224|consen 23 PEREAVADLLNRLEDRNAISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKG----VRRVSRESNE----PVLALL 94 (550)
T ss_pred hhHHHHHHHHHhhcccccccccCCCccchheeeeeccccccchHHHHHHHHHHHHH----HHHhhhhhhh----HHHHHH
Confidence 456666667766665322111 0 111222222334444444444443333222 1223333332 234455
Q ss_pred hhcchHhHHHHHHHHHHHHHhcccCCCCc---chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc-ccHHHHHHH
Q 001855 113 QLESAKSISKKLCDTVSELASNILPENGW---PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAV 188 (1004)
Q Consensus 113 ~~~~~~~vr~~~~~~l~~i~~~~~~~~~~---~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~ 188 (1004)
.+ .++.++..++.+++.++......+.. ..+=+.+.+++.+. ..++..+..|+..+......... .....+.|
T Consensus 95 qs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p- 171 (550)
T KOG4224|consen 95 QS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARSGALEP- 171 (550)
T ss_pred hC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhccchhh-
Confidence 55 89999999999999888765443322 33344566666544 56777888888888876332211 11222333
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc--chHHH
Q 001855 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT--EPRFL 266 (1004)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~~ 266 (1004)
+...-++. +..+|..+..+|.++....++ ...+.. ..-++.+.+.+++.+.+++.-|+..+..++-. ..+.+
T Consensus 172 ltrLaksk-dirvqrnatgaLlnmThs~En---Rr~LV~--aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 172 LTRLAKSK-DIRVQRNATGALLNMTHSREN---RRVLVH--AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred hHhhcccc-hhhHHHHHHHHHHHhhhhhhh---hhhhhc--cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 33344554 889999999999888765432 111110 02344566667788999999999999877632 23444
Q ss_pred HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCC
Q 001855 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1004)
Q Consensus 267 ~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 346 (1004)
...-+.+++.+..++. +.+++++.+|--.+..++...+|.....+ ..-+|.++..+..+.
T Consensus 246 aqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnlasdt~Yq~eiv~------ag~lP~lv~Llqs~~------------ 305 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNLASDTEYQREIVE------AGSLPLLVELLQSPM------------ 305 (550)
T ss_pred HhcccchHHHHHHHHh--CCChHHHHHHHHHHhhhcccchhhhHHHh------cCCchHHHHHHhCcc------------
Confidence 4444567787877774 45788888888888887764222211111 123555555553211
Q ss_pred ccccCCcccchHHHHHHHHHHhcCCC-cchH-HHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHH
Q 001855 347 EDAGESSNYSVGQECLDRLAIALGGN-TIVP-VASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSM 422 (1004)
Q Consensus 347 ~d~~~~~~~~~a~~~l~~l~~~~~~~-~~~~-~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~ 422 (1004)
....-+...|+..++-+-+.+ .+.. .++.-+...+. ..+.+.+..|...+-.++...........+ .-+|.
T Consensus 306 -----~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k 380 (550)
T KOG4224|consen 306 -----GPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK 380 (550)
T ss_pred -----hhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH
Confidence 001112233444444332211 1111 12222333333 345568888888888887654332222222 35677
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCc-----ccc
Q 001855 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----EIL 497 (1004)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-----~~l 497 (1004)
+...+.|....||.....|++.++-.-.... .-.-..++|.++..+.+ .+..||..|..+|.++.+.... +..
T Consensus 381 l~eL~lD~pvsvqseisac~a~Lal~d~~k~-~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~YarviEaw 458 (550)
T KOG4224|consen 381 LIELLLDGPVSVQSEISACIAQLALNDNDKE-ALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEHYARVIEAW 458 (550)
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHhccccHH-HHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHHHHHHHHHh
Confidence 7777888888888877777777664321110 01224677888888888 8899999999999999865431 111
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001855 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1004)
Q Consensus 498 ~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 534 (1004)
....+.+-..|...+.+....++..+...+-.+....
T Consensus 459 d~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 459 DHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred cCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 1112455555666666655556666666666555443
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.84 E-value=0.00015 Score=76.51 Aligned_cols=408 Identities=16% Similarity=0.147 Sum_probs=221.6
Q ss_pred HHHHHHHHHHhhc--chHhHHHHHHHHHHHHHhc-ccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc
Q 001855 103 SLKSMLLQSIQLE--SAKSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1004)
Q Consensus 103 ~i~~~ll~~l~~~--~~~~vr~~~~~~l~~i~~~-~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1004)
.+.+-..+.++.. ..+.-|+.+..++..++.. .+|+.+-.+++=.+..++++.++-.|+....++..+.....+.+
T Consensus 22 t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl- 100 (898)
T COG5240 22 TLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL- 100 (898)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh-
Confidence 3444445556542 2344555555555555432 23444556788888899999999999887777776655433321
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
-....+++-++......+|-.|++.|..++..- . .+.+=..+.+..-++...++..|+-.-..+.
T Consensus 101 ----m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~----t-------v~~~er~l~~a~Vs~~~a~~saalv~aYhLl 165 (898)
T COG5240 101 ----MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE----T-------VYDFERYLNQAFVSTSMARRSAALVVAYHLL 165 (898)
T ss_pred ----HHHHHHHHhhccCCccccccHHHHHHHHhcCcc----h-------hhhHHHHhhhhccccchhhhhhHHHHhhhhc
Confidence 112333433444424478888888887776531 1 2223333444444556666666554433333
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCC----------CcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001855 260 GTEPRFLRRQLVDVVGSMLQIAEAE----------SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1004)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~----------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1004)
-........+..+.-+..+.+...+ ..+.-....|+.++..+-+.. .+ ..-+++..+...
T Consensus 166 p~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~d----km------a~lklv~hf~~n 235 (898)
T COG5240 166 PNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTD----KM------AQLKLVEHFRGN 235 (898)
T ss_pred cccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhccc----HH------HHHHHHHHhhcc
Confidence 3333333344433333333322111 111223455666666654421 00 112222222111
Q ss_pred hcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcC-CCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 001855 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG-GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (1004)
Q Consensus 330 l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1004)
.. . ....+....+......+. ..+.+..+.|++..++++.-..+...+..++..++...
T Consensus 236 ~s-m-------------------knq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n 295 (898)
T COG5240 236 AS-M-------------------KNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN 295 (898)
T ss_pred cc-c-------------------ccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence 00 0 001111222222222221 13677788999999999876666666666666665532
Q ss_pred -HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHH
Q 001855 409 -AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1004)
Q Consensus 409 -~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~ 487 (1004)
++ ..+.+.+..+...|.......|.+|.+.|.+++...|..+ ...=+.+-..++| .|. .-+..++..
T Consensus 296 v~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd-~Nr---~IstyAITt 363 (898)
T COG5240 296 VGS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISD-ENR---TISTYAITT 363 (898)
T ss_pred cCH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhc-ccc---cchHHHHHH
Confidence 22 4566777777778888888999999999999998765433 1111223333445 443 446677778
Q ss_pred HhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHH
Q 001855 488 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAK 567 (1004)
Q Consensus 488 l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~ 567 (1004)
+++....+ -.+.++..+...+.+-+...+.-++.++.+++..++.+...| +.+|...+.+. ...+.+..
T Consensus 364 LLKTGt~e----~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~----l~FL~~~L~~e---Gg~eFK~~ 432 (898)
T COG5240 364 LLKTGTEE----TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY----LDFLGSSLLQE---GGLEFKKY 432 (898)
T ss_pred HHHcCchh----hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH----HHHHHHHHHhc---ccchHHHH
Confidence 87766544 345666666666666666666677888888887776544333 44455554432 34556667
Q ss_pred HHHHHHHHHhhh
Q 001855 568 SMECISLVGMAV 579 (1004)
Q Consensus 568 a~~~l~~l~~~~ 579 (1004)
++++++.+....
T Consensus 433 ~Vdaisd~~~~~ 444 (898)
T COG5240 433 MVDAISDAMEND 444 (898)
T ss_pred HHHHHHHHHhhC
Confidence 777777665444
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.82 E-value=4.6e-05 Score=80.25 Aligned_cols=292 Identities=16% Similarity=0.138 Sum_probs=180.6
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc
Q 001855 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1004)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 260 (1004)
.+.++.|++..-+++. ..-|...+.+++..+.... .-.+.+...++.|...+.++....|..|+++|.+++.
T Consensus 261 ~~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~n-------v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 261 ALLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEEN-------VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhc-------cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 4566777777777775 6778888888888876642 1123455677888888888888999999999999999
Q ss_pred cchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001855 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1004)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1004)
.+|..+...-+.+-. ++ .+.+..+...|+. ++.+. .....+..++..+...+.+..++
T Consensus 333 ~~P~kv~vcN~evEs-LI-----sd~Nr~IstyAIT---tLLKT---------Gt~e~idrLv~~I~sfvhD~SD~---- 390 (898)
T COG5240 333 KYPQKVSVCNKEVES-LI-----SDENRTISTYAIT---TLLKT---------GTEETIDRLVNLIPSFVHDMSDG---- 390 (898)
T ss_pred hCCceeeecChhHHH-Hh-----hcccccchHHHHH---HHHHc---------CchhhHHHHHHHHHHHHHhhccC----
Confidence 888765432222111 11 2345556555554 34442 11233444444444444333221
Q ss_pred CCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001855 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1004)
Q Consensus 341 ~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1004)
....+.+++..|+..++.+ ...++.++...+. ....+-+.+++.++..+.+..++.-...+
T Consensus 391 -------------FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraL--- 452 (898)
T COG5240 391 -------------FKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERAL--- 452 (898)
T ss_pred -------------ceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHH---
Confidence 3456788999999888733 2335566655544 45678888899999998887765433333
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCccccc
Q 001855 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1004)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~ 498 (1004)
..++..+.|.. --..+...|+-+.+.-|..- ...|...+.+.++ - +|..||.+|..||..+.-+.+..
T Consensus 453 -e~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----L-EN~ivRsaAv~aLskf~ln~~d~--- 521 (898)
T COG5240 453 -EVLCTFIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLI----L-ENNIVRSAAVQALSKFALNISDV--- 521 (898)
T ss_pred -HHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----H-hhhHHHHHHHHHHHHhccCcccc---
Confidence 44444444432 12234445555554433210 0235555554443 2 57899999999999998766632
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001855 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1004)
Q Consensus 499 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 531 (1004)
-..+.+...+..++++.+..+|..|.-++..+-
T Consensus 522 ~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 122445556667899999999999888777664
No 75
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00027 Score=78.14 Aligned_cols=422 Identities=15% Similarity=0.167 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh
Q 001855 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1004)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1004)
.+..-.+.+.+-+-|.+ ++..+.-.+--+++.|+.. +--+++.|.+.+++++.++.+|+-|+.|...+....++.
T Consensus 102 qdvllLltNslknDL~s-~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred hHHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 44444555556666665 4544444444455554432 567899999999999999999999999999888876664
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhc-----------CChh
Q 001855 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-----------GNEA 246 (1004)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-----------~~~~ 246 (1004)
...+++.+.+.|.+. +..|-.+++..+..++..- .+....|.++.|.++..|.+.... .+|-
T Consensus 177 ----~e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~--~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 177 ----VEHFVIAFRKLLCEK-HHGVLIAGLHLITELCKIS--PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred ----HHHhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence 566777788888887 8899999999998888752 235667888999999999887653 2556
Q ss_pred HHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcc----hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q 001855 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLE----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (1004)
Q Consensus 247 ~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (1004)
.....+++|.-+.......- ..+.+++. ++..+.+.+ ..+-..+..++..+-.+ ......-
T Consensus 250 LQi~iLrlLriLGq~d~daS-d~M~DiLa---qvatntdsskN~GnAILYE~V~TI~~I~~~-----------~~Lrvla 314 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADAS-DLMNDILA---QVATNTDSSKNAGNAILYECVRTIMDIRSN-----------SGLRVLA 314 (866)
T ss_pred HHHHHHHHHHHhcCCCccHH-HHHHHHHH---HHHhcccccccchhHHHHHHHHHHHhccCC-----------chHHHHH
Confidence 77778888877766543221 11222222 222222222 22333333333333221 1112222
Q ss_pred HHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 001855 323 FAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALA 402 (1004)
Q Consensus 323 ~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~ 402 (1004)
+.++-..+... +...+..|...|.++...- ...+..=-..+.++++|++...|.-|+...-
T Consensus 315 iniLgkFL~n~-----------------d~NirYvaLn~L~r~V~~d--~~avqrHr~tIleCL~DpD~SIkrralELs~ 375 (866)
T KOG1062|consen 315 INILGKFLLNR-----------------DNNIRYVALNMLLRVVQQD--PTAVQRHRSTILECLKDPDVSIKRRALELSY 375 (866)
T ss_pred HHHHHHHhcCC-----------------ccceeeeehhhHHhhhcCC--cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 33333333222 2224445555555544322 1233333446678999999999999998888
Q ss_pred HHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHH
Q 001855 403 QIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAA 482 (1004)
Q Consensus 403 ~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~ 482 (1004)
.+... ..+..++.-++..|...++..+.....-+..+++.+.|.- .|+-+.+-.+++.-.+ .|+..+.
T Consensus 376 ~lvn~------~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k--~W~idtml~Vl~~aG~----~V~~dv~ 443 (866)
T KOG1062|consen 376 ALVNE------SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDK--RWHIDTMLKVLKTAGD----FVNDDVV 443 (866)
T ss_pred HHhcc------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHhccc----ccchhhH
Confidence 88765 3344555555555655577788888888888888887653 3333444444444443 3445555
Q ss_pred HHHHHHhhcCCcccccCc-hHHHHHHHHH--HhhcCChhHHHHHHHHHHHHHHHhHh-----hhH-hhHhhhhHHHHHHH
Q 001855 483 SAVLNFSENCTPEILTPY-LDGIVSKLLV--LLQNGKQMVQEGALTALASVADSSQE-----HFQ-KYYDAVMPFLKAIL 553 (1004)
Q Consensus 483 ~~l~~l~~~~~~~~l~~~-~~~i~~~l~~--~l~~~~~~vr~~a~~~l~~l~~~~~~-----~~~-~~~~~i~~~l~~~l 553 (1004)
..+..++.....+ ...| ...+...+.. .+.-....+...+..|||.-....-. +.. .--+.++..+.+.+
T Consensus 444 ~nll~LIa~~~~e-~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~ 522 (866)
T KOG1062|consen 444 NNLLRLIANAFQE-LHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVL 522 (866)
T ss_pred HHHHHHHhcCCcc-hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHH
Confidence 5566665544222 1122 1111111111 11122333455677888776633211 111 12246667777777
Q ss_pred hhcCcccchhhhHHHHHHHHHHHhhhC
Q 001855 554 VNATDKSNRMLRAKSMECISLVGMAVG 580 (1004)
Q Consensus 554 ~~~~~~~~~~l~~~a~~~l~~l~~~~~ 580 (1004)
..... +...|+.++.++..+....+
T Consensus 523 ~~~~s--~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 523 MSHSS--DSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred Hhccc--hHHHHHHHHHHHHHHHhhcc
Confidence 65333 35678888888887765554
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.79 E-value=1.2e-05 Score=88.57 Aligned_cols=391 Identities=17% Similarity=0.171 Sum_probs=227.7
Q ss_pred HHHHhhCCCCCh---hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcc--
Q 001855 421 SMVLNSFRDPHP---RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-- 495 (1004)
Q Consensus 421 ~~l~~~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-- 495 (1004)
|.++..|.|.++ .-...++.+++.++.. +.+.......++..+....+...+......++.++..+++.....
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 556667766554 4556777777777753 222123333444444433333235566778888888888765322
Q ss_pred --cccCchHH-HHHHHHHHhhcC-----C--hhHHHHHHHHHHHHHHHhHhh-hHhhHhhhhHHHHH-----HHhhcCcc
Q 001855 496 --ILTPYLDG-IVSKLLVLLQNG-----K--QMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKA-----ILVNATDK 559 (1004)
Q Consensus 496 --~l~~~~~~-i~~~l~~~l~~~-----~--~~vr~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~-----~l~~~~~~ 559 (1004)
....|+.. +++.++...-.. + ..+-..+...++.++...+.+ -...++.+...+.. .+.....
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~- 158 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSS- 158 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccc-
Confidence 23445553 777777655322 1 333344444444444444422 12334444443330 0000000
Q ss_pred cchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHH
Q 001855 560 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1004)
Q Consensus 560 ~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l 639 (1004)
....-..+.+-.+..+..++.++.-.|...++++.++.+... ..+...+..+..+++.+++.++.+= .+..++..+
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~ 234 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALS--SEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSL 234 (415)
T ss_pred ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHH
Confidence 000112233444555666666666666777777777774321 1224567788888888887753321 344444444
Q ss_pred HHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhcc
Q 001855 640 LQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719 (1004)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~ 719 (1004)
........ + ...+..++..+.++.+..--.-.|....++..++.
T Consensus 235 ~~~~~~~~-----------------~-------------------~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~ 278 (415)
T PF12460_consen 235 LQSISSSE-----------------D-------------------SELRPQALEILIWITKALVMRGHPLATELLDKLLE 278 (415)
T ss_pred HhhhcccC-----------------C-------------------cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44331000 0 11134566778888887655556888888888888
Q ss_pred ccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHh
Q 001855 720 LLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1004)
Q Consensus 720 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 799 (1004)
.++ ++++...++++++-++........+..+..-..=|-++++..++|.+++.+.+..+ +.+...+.++..+++.+
T Consensus 279 lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k~~yL~ALs~ll~~v 354 (415)
T PF12460_consen 279 LLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIKSNYLTALSHLLKNV 354 (415)
T ss_pred HhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhC
Confidence 887 36889999999998887643332222222233456788999999999998876543 36777888999998876
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhH
Q 001855 800 GPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF 879 (1004)
Q Consensus 800 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 879 (1004)
.. +.+.+-++.+.++|-..+.. .+..++..+.+++..++...++.+.+|+
T Consensus 355 P~----~vl~~~l~~LlPLLlqsL~~--------------------------~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 355 PK----SVLLPELPTLLPLLLQSLSL--------------------------PDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred CH----HHHHHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 43 44444445555555443310 1124777899999999999988999999
Q ss_pred HHHHHhHhh
Q 001855 880 DELSSYLTP 888 (1004)
Q Consensus 880 ~~ll~~l~~ 888 (1004)
..++|.+++
T Consensus 405 ~sLI~~LL~ 413 (415)
T PF12460_consen 405 SSLIPRLLK 413 (415)
T ss_pred HHHHHHHHh
Confidence 999998875
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=4.6e-05 Score=82.71 Aligned_cols=223 Identities=12% Similarity=0.172 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCccc----------CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC
Q 001855 69 PHPEARAMAAVLLRKLLTRDDSFLWP----------RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1004)
Q Consensus 69 ~~~~~r~~a~~~L~~~i~~~~~~~w~----------~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~ 138 (1004)
....+-.++...+++-++.. +.++ -.+++....+..-++..|++ .-+.+|+.+..++.+++-. +|
T Consensus 102 ~~tdvlmL~tn~~rkdl~S~--n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLk-YP- 176 (877)
T KOG1059|consen 102 DDTDVLMLTTNLLRKDLNSS--NVYEVGLALSGLSCIVTPDLARDLADDVFTLLNS-SKPYVRKKAILLLYKVFLK-YP- 176 (877)
T ss_pred CCccHHHHHHHHHHHHhccC--ccchhhheecccccccCchhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHh-hh-
Confidence 34445555566666655532 1121 13577777788888889987 6899999999999988875 45
Q ss_pred CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHh---------------hcCCCChHHHH
Q 001855 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNC---------------LTNSNNPDVKI 203 (1004)
Q Consensus 139 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~---------------l~~~~~~~vr~ 203 (1004)
+....-+|.|.+-+.++++.+..+|..++..++..-+....+..|.++.++... |.-- .|.+++
T Consensus 177 eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl-EPRLgK 255 (877)
T KOG1059|consen 177 EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL-EPRLGK 255 (877)
T ss_pred HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhcccc-Cchhhh
Confidence 355566889999999999999999999999998876654433333333332211 0000 222222
Q ss_pred -------------HHHHHHHHHHHhhcCc----chHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHH
Q 001855 204 -------------AALNAVINFIQCLTSS----ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1004)
Q Consensus 204 -------------~a~~~l~~~~~~~~~~----~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 266 (1004)
.|...++.++..+-.. ...+ -...+...++.|...+.+.|+..+.-++-++..++..+|...
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH
Confidence 2333333332221100 0000 012234566777777888899999999999999999999988
Q ss_pred HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001855 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 267 ~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1004)
..|-+-|+..+ .|.++.+|..|++++..++..
T Consensus 335 qa~kdlIlrcL------~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 335 QAHKDLILRCL------DDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHhHHHHHHHh------ccCCchhHHHHHHHHHHHhhh
Confidence 88766665543 456899999999999998873
No 78
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.72 E-value=3.2e-07 Score=92.80 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=125.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCcchHHHH-------HHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001855 351 ESSNYSVGQECLDRLAIALGGNTIVPVAS-------EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1004)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~~~~~~~l~-------~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1004)
+|..+..+...|..+.....+....+.+. ..+...++|....+-..|+.+++.++..++..+.++.+.++|.+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44445556666666655431122333333 34445566677788899999999999998888889999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh-HHHHHhhcCCCCChhHHHHHHHHHHHHhhcCC--cccccC-
Q 001855 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV-LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP- 499 (1004)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l-l~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~l~~- 499 (1004)
+..+.+++..+|.+|..+|..+++..+ +.+.+ .+.+....++ +++.+|..++..+..++...+ ...+..
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999998764 23344 6667777888 999999999999999999887 333433
Q ss_pred -chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhH
Q 001855 500 -YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMP 547 (1004)
Q Consensus 500 -~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~ 547 (1004)
.++.+.+.+...+.++++.||..+-.++..+...+++.-...+..+=|
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~ 221 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDP 221 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---------
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchh
Confidence 358899999999999999999999999999998888654444443333
No 79
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.8e-07 Score=87.88 Aligned_cols=382 Identities=14% Similarity=0.121 Sum_probs=225.3
Q ss_pred hHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh-ccccHHHHHHHHHHhhcCCC
Q 001855 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSN 197 (1004)
Q Consensus 119 ~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~ 197 (1004)
..++.++.+.+.+..+..- ..-.+-...++.++++.++....++-..++.+.-..+.. +.-.+..+-+.+.+.+.+
T Consensus 62 nlqrsaalafAeitek~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-- 138 (550)
T KOG4224|consen 62 NLQRSAALAFAEITEKGVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-- 138 (550)
T ss_pred ccchHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--
Confidence 3444455555555554332 222344555666677888888888888888776655443 222345555677777776
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHH
Q 001855 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1004)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l 277 (1004)
+.++|..++.|+.+++.+-+........ .-+..+....++.+..++..+...|..+...+...-.-.-..-++++
T Consensus 139 ~vevqcnaVgCitnLaT~d~nk~kiA~s-----GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvL 213 (550)
T KOG4224|consen 139 GVEVQCNAVGCITNLATFDSNKVKIARS-----GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVL 213 (550)
T ss_pred CcEEEeeehhhhhhhhccccchhhhhhc-----cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhh
Confidence 6789999999999999863221111111 11222333445667788888999888776443221110001223445
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccch
Q 001855 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1004)
Q Consensus 278 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~ 357 (1004)
...+ +..+.+++..|...++.++-.. .-.+.+.+.-++++|.++..|.+.++ ...-.
T Consensus 214 Vsll--~s~d~dvqyycttaisnIaVd~----~~Rk~Laqaep~lv~~Lv~Lmd~~s~-----------------kvkcq 270 (550)
T KOG4224|consen 214 VSLL--KSGDLDVQYYCTTAISNIAVDR----RARKILAQAEPKLVPALVDLMDDGSD-----------------KVKCQ 270 (550)
T ss_pred hhhh--ccCChhHHHHHHHHhhhhhhhH----HHHHHHHhcccchHHHHHHHHhCCCh-----------------HHHHH
Confidence 5555 3457788888888888776521 01122333445688888887654321 11122
Q ss_pred HHHHHHHHHHhc--CCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCC-CCChh
Q 001855 358 GQECLDRLAIAL--GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFR-DPHPR 433 (1004)
Q Consensus 358 a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~-d~~~~ 433 (1004)
|..+|..++.-- ..+-+-..-+|.+.+.++++.-....+.+.|+..++-...... ... ..++..++..|. .++..
T Consensus 271 A~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~-lI~dagfl~pLVrlL~~~dnEe 349 (550)
T KOG4224|consen 271 AGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV-LIADAGFLRPLVRLLRAGDNEE 349 (550)
T ss_pred HHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc-ceecccchhHHHHHHhcCCchh
Confidence 344444444210 0001111235677788889888888899999987765432210 001 123344555554 34566
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCch-HHHHHHHHHHh
Q 001855 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLL 512 (1004)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~-~~i~~~l~~~l 512 (1004)
++..|..+|..++.........-.-...+|.+...+.| ....||.....++..+.-.-... ..++ ..+++.|+...
T Consensus 350 iqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k--~~lld~gi~~iLIp~t 426 (550)
T KOG4224|consen 350 IQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDK--EALLDSGIIPILIPWT 426 (550)
T ss_pred hhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccH--HHHhhcCCcceeeccc
Confidence 88888888888876443332122345778888888888 77788887777777665332211 1111 24677788888
Q ss_pred hcCChhHHHHHHHHHHHHHHHhH
Q 001855 513 QNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 513 ~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
.+.+.++|..+..+++++.....
T Consensus 427 ~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 427 GSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred CccchhhcccHHHHHHhhhhhhH
Confidence 88899999999999999886654
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.67 E-value=0.0027 Score=75.49 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHH
Q 001855 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWA 437 (1004)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 437 (1004)
+......++...+=..-+...+..+...+..+...+|--|+.|++.+++.-+... -.+.+-..+-+.+.|.+..||++
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHH
Confidence 3334444443322113344556666677778899999999999999998766532 23456677888999999999999
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001855 438 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1004)
Q Consensus 438 a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~ 517 (1004)
|+..+|+++...+.. ..+....+.+.+.| +...||.+++..+..+++..+ + + +-.+.++..++.-.++...
T Consensus 875 aldLvGrfvl~~~e~-----~~qyY~~i~erIlD-tgvsVRKRvIKIlrdic~e~p-d-f-~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPEL-----IFQYYDQIIERILD-TGVSVRKRVIKILRDICEETP-D-F-SKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HHHHHhhhhhccHHH-----HHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHhCC-C-h-hhHHHHHHHHHHHhccchh
Confidence 999999999876543 44455556677778 888999999999999998776 2 2 4445556666666666666
Q ss_pred hHHHHHHHHHHHHHH
Q 001855 518 MVQEGALTALASVAD 532 (1004)
Q Consensus 518 ~vr~~a~~~l~~l~~ 532 (1004)
.+++-+...+-.+..
T Consensus 946 ~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 946 NIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHHHHHHHHHHHhc
Confidence 688888887777653
No 81
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.4e-05 Score=83.04 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=135.2
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001855 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1004)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1004)
.++..+-....+..|+.|.....-+..+....--.-...+.+++..+.....|++..+|..|+.+|+..+...++.. ..
T Consensus 217 ~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~t 295 (533)
T KOG2032|consen 217 KILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RT 295 (533)
T ss_pred HHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HH
Confidence 33333333444567888888777777766532111124567788888888999999999999999999999888777 78
Q ss_pred hhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001855 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 457 ~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
|...++..++..|-|..+.+|...++.+|..+.+......+.+|+-++.-.+..++++.+.++|.+++..+|.++...|.
T Consensus 296 h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 296 HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 89999999999987767889999999999999998877789999999999999999999999999999999999998886
Q ss_pred hhHh-hHhhhh
Q 001855 537 HFQK-YYDAVM 546 (1004)
Q Consensus 537 ~~~~-~~~~i~ 546 (1004)
.... |.+++.
T Consensus 376 ~~e~~Fte~v~ 386 (533)
T KOG2032|consen 376 GWEEFFTEQVK 386 (533)
T ss_pred CchhhhHHHHH
Confidence 5544 444444
No 82
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.0016 Score=72.08 Aligned_cols=344 Identities=15% Similarity=0.165 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-----CCCChhHHH-HHHHHHHHhhhhhch--hHHhhhhhhhHH
Q 001855 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----RDPHPRVRW-AAINAIGQLSTDLGP--DLQNQFHPQVLP 463 (1004)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~d~~~~vr~-~a~~~l~~l~~~~~~--~~~~~~~~~ll~ 463 (1004)
+.|-.|-..+..+.+..++.+.+.+-.++....+.. +|-+..++. ++..+.|.-+..+.+ ++..-.-..++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 455555555555555555444444433333323333 222334444 444445444433322 121122344455
Q ss_pred HHHhhcCCCC-ChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHh---Hhhh
Q 001855 464 ALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSS---QEHF 538 (1004)
Q Consensus 464 ~l~~~l~~~~-~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~---~~~~ 538 (1004)
.+- .+.. ..-+|...++.++.-++.-- ....-+-+...+++++++. +.-||-.+..++..+++-. ++.|
T Consensus 492 El~---~~~~~~RiiRRRVa~ilg~Wvsvq~---~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsF 565 (978)
T KOG1993|consen 492 ELA---NDHGNSRIIRRRVAWILGQWVSVQQ---KLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSF 565 (978)
T ss_pred Hhh---hcccchhHHHHHHHHHHhhhhheec---hHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhh
Confidence 544 2212 33467888888888776221 1223344556677788777 5678888888888887653 4678
Q ss_pred HhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHH
Q 001855 539 QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA 618 (1004)
Q Consensus 539 ~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~ 618 (1004)
-||++.+...+.+++..... -.-|-.++..++.+...++ +.+.||+.++++++-.+++. .+....+|.+++.++.
T Consensus 566 lp~lenlf~~lfkll~~~~e---~Dtk~~VL~~ls~lI~r~~-e~I~P~~~~ivq~lp~LWe~-s~~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 566 LPYLENLFVLLFKLLKAVEE---CDTKTSVLNLLSTLIERVS-EHIAPYASTIVQYLPLLWEE-SEEEPLLRCALLATLR 640 (978)
T ss_pred hhhHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhh-hccCcHHHHHHHHHHH
Confidence 99999999999998876322 2246668889999988888 78889999999998887763 2333458899999999
Q ss_pred HHHhHhccCcccchhhhhHHHHHHccc-CCCccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHH
Q 001855 619 RLCKCLGQDFLPYMSVVMPPLLQSAQL-KPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCC 697 (1004)
Q Consensus 619 ~l~~~~~~~~~~~l~~i~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~ 697 (1004)
.++.++|..-.+.-+-++|.+-.+..- .|...+.. +.++.+++.
T Consensus 641 ~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~-----------------------------------EDgmeLW~~ 685 (978)
T KOG1993|consen 641 NLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLL-----------------------------------EDGMELWLT 685 (978)
T ss_pred HHHHHhccCCccchHHHHHHHHHhcCCCCCceeehh-----------------------------------hhHHHHHHH
Confidence 999999998777777777766555532 12211111 123344555
Q ss_pred HHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 001855 698 YADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALH 777 (1004)
Q Consensus 698 l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 777 (1004)
...+. ..+.|-+-.+++.+...++.+ .+.++. +. .++..+.. -.++.+++.....++..+...+.
T Consensus 686 ~L~n~-~~l~p~ll~L~p~l~~~iE~s-te~L~t-~l----~Ii~sYil--------Ld~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 686 TLMNS-QKLTPELLLLFPHLLYIIEQS-TENLPT-VL----MIISSYIL--------LDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred HHhcc-cccCHHHHHHHHHHHHHHHhh-hhhHHH-HH----HHHHHHHh--------hccHHHHHHHHHHHHHHHHHHHH
Confidence 55443 346666666667766666532 333332 22 23332211 12356677777777776666554
Q ss_pred cCCcHHHHHHHHHHHHHHHH
Q 001855 778 KEPDTEICASMLDSLNECIQ 797 (1004)
Q Consensus 778 ~~~~~~~~~~~~~~l~~~~~ 797 (1004)
+-++ +-...++....-+++
T Consensus 751 dvr~-egl~avLkiveili~ 769 (978)
T KOG1993|consen 751 DVRN-EGLQAVLKIVEILIK 769 (978)
T ss_pred HhhH-HHHHHHHHHHHHHHh
Confidence 3222 223334444444443
No 83
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.64 E-value=0.0021 Score=72.60 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHccc-cchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCC
Q 001855 856 VFDQVGEILGTLIKTFKA-AFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND 934 (1004)
Q Consensus 856 ~~~~~~~~l~~l~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~ 934 (1004)
.+..-...+...++..|. .+.|.+..++|.++..+ +-++..+|..++.++..++...+.-...|+.+++|.++..-.+
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~ 961 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSD 961 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCC
Confidence 344566778888888875 56899999999999998 6788889999999999999998888888999999999997766
Q ss_pred CC---hhHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHH
Q 001855 935 EN---QDVRQAAVYGLGVCAEFGG-SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALG 995 (1004)
Q Consensus 935 ~~---~~vr~~a~~~lg~l~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~ 995 (1004)
.+ ..||..|.-||+.+.+..| ..+.+|-+.+++.|.+.|.++ .+-+|..|+.|=+
T Consensus 962 ~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk------KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 962 NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK------KRLVRKEAVDTRQ 1020 (1030)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH------HHHHHHHHHHHhh
Confidence 55 6799999999999999776 467899999999999999887 6788888887643
No 84
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.54 E-value=3.5e-07 Score=73.70 Aligned_cols=67 Identities=33% Similarity=0.565 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc--------CCCHHHHHHHHHHHHHHH
Q 001855 42 AELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--------RLSLHTQSSLKSMLLQSI 112 (1004)
Q Consensus 42 A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~--------~l~~~~~~~i~~~ll~~l 112 (1004)
||.+|+++++++|+ |...|++++.+ +.++.+|++|+++||+.|.++ |. .++++.++.||+.+++.|
T Consensus 1 AE~~L~~~~~~~p~-~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~----W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 1 AEQQLKQFQKQNPG-FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN----WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHSCTC-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS----GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc----CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 78999999993376 56999999965 669999999999999999998 88 999999999999999987
Q ss_pred h
Q 001855 113 Q 113 (1004)
Q Consensus 113 ~ 113 (1004)
.
T Consensus 76 ~ 76 (77)
T PF03810_consen 76 L 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 85
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00044 Score=71.60 Aligned_cols=450 Identities=15% Similarity=0.160 Sum_probs=243.6
Q ss_pred HhHHHHHHHHHHHHHhcccCC----CCcchHHHH--------H-HHhhcCCChhHHHHHHHHHHHhhhhHh---------
Q 001855 118 KSISKKLCDTVSELASNILPE----NGWPELLPF--------M-FQCVSSDSVKLQESAFLIFAQLSQYIG--------- 175 (1004)
Q Consensus 118 ~~vr~~~~~~l~~i~~~~~~~----~~~~~ll~~--------L-~~~l~~~~~~~r~~al~~l~~l~~~~~--------- 175 (1004)
.+||..+..++.+..+. .|+ +.|.-++|. | .-.++++++..|..|+.++..+.+...
T Consensus 10 akvr~~al~~~~~~~~~-~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKS-IEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHhhHHHHHHHHHhh-hhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 44555555555544432 121 577766643 2 223567888899999999988876532
Q ss_pred --hhccc-------cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChh
Q 001855 176 --DTLTP-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1004)
Q Consensus 176 --~~~~~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 246 (1004)
..|.| .+.++..+++-.|.....+.+-...++|+..++...+ ....-..++-.++..+...+.+.|+.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p---~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAP---YDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 12333 2455566666666655577888899999999988642 11112234555666677777788999
Q ss_pred HHHHHHHHHHHHHccch---HHH-------------HHhH------------HHH-----------------HHHHHHh-
Q 001855 247 TAQEALELLIELAGTEP---RFL-------------RRQL------------VDV-----------------VGSMLQI- 280 (1004)
Q Consensus 247 ~~~~a~~~L~~l~~~~~---~~~-------------~~~~------------~~i-----------------~~~l~~~- 280 (1004)
++..++.++..++.... +.- .+|. +.. +..+..+
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 99999999988876541 100 0000 000 0000000
Q ss_pred ----------------hcCCCcchHHHHHHHHHHHHHHHhhh----c-----------cchhhhcchhhHHHHHHHHHHh
Q 001855 281 ----------------AEAESLEEGTRHLAIEFVITLAEARE----R-----------APGMMRKLPQFINRLFAILMSM 329 (1004)
Q Consensus 281 ----------------~~~~~~~~~vr~~a~~~l~~l~~~~~----~-----------~~~~~~~~~~~~~~l~~~l~~~ 329 (1004)
++.-.....+|..+++.+..++.+-. + .+........+...++..+...
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~ 325 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTG 325 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHH
Confidence 00011223468888888777666410 0 0000001112333344443333
Q ss_pred hcCCCC----------CccccCC---CCC--CccccCCcccchHHHHHHHHHH----hcCCCcchHHHHHHHHHhhc-CC
Q 001855 330 LLDIED----------DPLWHSA---ETE--DEDAGESSNYSVGQECLDRLAI----ALGGNTIVPVASEQLPAYLA-AP 389 (1004)
Q Consensus 330 l~~~~~----------~~~~~~~---~~~--~~d~~~~~~~~~a~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~-~~ 389 (1004)
+..... .+-|..- ..+ -.|...++........+..++. .++ +.- ....+.+..... +.
T Consensus 326 lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lp-n~~-~T~~~~Fl~GC~d~~ 403 (728)
T KOG4535|consen 326 LIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLP-NDR-QTLCITFLLGCNDSK 403 (728)
T ss_pred HhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCC-Ccc-hhhhHHHHhcccchH
Confidence 321100 0112110 001 1111122333333333333321 121 111 123333333333 35
Q ss_pred ChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH------HhhhhhhhH
Q 001855 390 EWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL------QNQFHPQVL 462 (1004)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~~~~ll 462 (1004)
+--+|.+|+.+.+..+-+.. .....+..+....++..+.|+.-.+|..++|++|.+...+-..+ ...+...++
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll 483 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL 483 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence 66678888888776654322 22334556677788888899999999999999999988763322 122333344
Q ss_pred HHHHhh--cCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHH-----hhcCChhHHHHHHHHHHHHHHHhH
Q 001855 463 PALAGA--MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL-----LQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 463 ~~l~~~--l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~-----l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
..++.. ..+..+.+|+..+..+|+++.....+ ...+-+..+++.-... .......||-+++.++|++.+.-.
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 444332 12223568999999999988765541 2233344444433222 223357899999999999986533
Q ss_pred hhh--HhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHh
Q 001855 536 EHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1004)
Q Consensus 536 ~~~--~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~ 577 (1004)
-.+ .++.+.+++.|..++.+. ....+|.+|..++...+.
T Consensus 563 ~~lq~~~wA~~~F~~L~~Lv~~~---~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 563 LPLQTAPWASQAFNALTSLVTSC---KNFKVRIRAAAALSVPGK 603 (728)
T ss_pred ccccCCCchHHHHHHHHHHHHHh---ccceEeehhhhhhcCCCC
Confidence 222 368889999999988654 335567766666655443
No 86
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.41 E-value=2.2e-06 Score=70.84 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCC
Q 001855 898 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN 977 (1004)
Q Consensus 898 ~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~ 977 (1004)
.|..++-+++.+....+..+.+|++.|+|.++.+++|+++.||-.|..+|..+++..+..+.+|+++++..|...+.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~- 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP- 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 4677888899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCchhhhhHHHHHHHHHHH
Q 001855 978 ALQPENLMAYDNAVSALGKI 997 (1004)
Q Consensus 978 ~~~~~~~~~~~na~~a~~~l 997 (1004)
++.+|..| .-+-|+
T Consensus 81 -----d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 -----DENVRSAA-ELLDRL 94 (97)
T ss_pred -----chhHHHHH-HHHHHH
Confidence 44555444 444443
No 87
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0046 Score=68.14 Aligned_cols=171 Identities=12% Similarity=0.231 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH
Q 001855 246 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI 325 (1004)
Q Consensus 246 ~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 325 (1004)
.+.-..+.-|..+.......+..++-+++. .+ ...+-++|..++++...++.. .-++.++..
T Consensus 295 nvklIvldrl~~l~~~~~~il~~l~mDvLr----vL--ss~dldvr~Ktldi~ldLvss------------rNvediv~~ 356 (948)
T KOG1058|consen 295 NVKLIVLDRLSELKALHEKILQGLIMDVLR----VL--SSPDLDVRSKTLDIALDLVSS------------RNVEDIVQF 356 (948)
T ss_pred chhhhhHHHHHHHhhhhHHHHHHHHHHHHH----Hc--CcccccHHHHHHHHHHhhhhh------------ccHHHHHHH
Confidence 344444455555543333444444334433 44 335678999999998888773 123555555
Q ss_pred HHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 001855 326 LMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIA 405 (1004)
Q Consensus 326 l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~ 405 (1004)
+-..+.++.+. +. ++....+....+.+...+..++ .+...+++.+.+++.|.+...-.+.+.-+....
T Consensus 357 Lkke~~kT~~~--------e~--d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~i 424 (948)
T KOG1058|consen 357 LKKEVMKTHNE--------ES--DDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAI 424 (948)
T ss_pred HHHHHHhcccc--------cc--ccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 55544443221 01 1122334556677777777775 677889999999999999887777777777777
Q ss_pred hhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhc
Q 001855 406 EGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (1004)
Q Consensus 406 ~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 450 (1004)
+..+..-. .++..++..+. -....+...|+|.+|.+++...
T Consensus 425 ek~p~Lr~----~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 425 EKFPNLRA----SIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HhCchHHH----HHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 66654222 23333333331 2356677899999999998764
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.37 E-value=2.8e-06 Score=76.00 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=90.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001855 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1004)
+++.+.+.+.+.+|..|..++.+++.++...++.....+. .+++.+.+.+.++++.++..++++++.++...+... ..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK-LI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH-HH
Confidence 4556667778888999999999999999876554444454 788999999999999999999999999998764333 22
Q ss_pred -hhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 457 -FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 457 -~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
.-..+++.+.+.+++ .+..++..++++|..+++
T Consensus 87 ~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 87 VLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 234589999999998 789999999999998863
No 89
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.34 E-value=0.0003 Score=76.66 Aligned_cols=238 Identities=13% Similarity=0.185 Sum_probs=146.8
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh-cCcccchhhhHHHHHH
Q 001855 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMEC 571 (1004)
Q Consensus 493 ~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~l~~~a~~~ 571 (1004)
..+.+.|+...++..|+..+..+...--+....|+..+....++.+.|+...+++.|..++.. ..++.....-...+++
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 446688999999999999998766555677889999999999999999999999888887754 2334444555568999
Q ss_pred HHHHHhhhCh---hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc-cCcccchhhhhHHHHHHcccCC
Q 001855 572 ISLVGMAVGK---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKP 647 (1004)
Q Consensus 572 l~~l~~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~ 647 (1004)
++.+.+...+ +....+-..+++.+..+...++ .+..++++..++.+..... ..+.+....+++.++.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 9999886542 2233445556666666433222 2356788888887777765 445555555555554221
Q ss_pred CccccCCCCCcccccCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHhccccCccC
Q 001855 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYF 725 (1004)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 725 (1004)
.|+ +.+.+. ...+.|..+.+..+..+. ++++.++..+-+++....
T Consensus 169 -------------------lWe-----------~~gniP---alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 169 -------------------LWE-----------RRGNIP---ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp -------------------GGG-----------STTTHH---HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred -------------------hhc-----------cCCCcC---cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 111 011111 234578888888777664 677888888777776543
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHH
Q 001855 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEIC 785 (1004)
Q Consensus 726 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 785 (1004)
++ ..++..+..++..+. .+.+.+.+..++..++..+.+.+....+
T Consensus 216 ~D---~~gF~LL~~iv~~~p------------~~~l~~yl~~I~~lll~RLq~skT~kf~ 260 (435)
T PF03378_consen 216 ND---HYGFDLLESIVENLP------------PEALEPYLKQIFTLLLTRLQSSKTEKFV 260 (435)
T ss_dssp CH---HHHHHHHHHHHHHS-------------HHHHGGGHHHHHHHHHHHHHHC--HHHH
T ss_pred cc---hHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHhhCCcHHHH
Confidence 33 447778888887652 3445666677777777777765544444
No 90
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.34 E-value=1.5e-05 Score=91.51 Aligned_cols=209 Identities=14% Similarity=0.230 Sum_probs=168.6
Q ss_pred CCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhh
Q 001855 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1004)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 449 (1004)
+.++.+.+.+.+...+.+++|+.|..|+..+....+... +....+..-+...+-..+.|.|..|...++.+|..++..+
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 356777888888899999999999999999998887665 2222344444455556678999999999999999999999
Q ss_pred chhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001855 450 GPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1004)
Q Consensus 450 ~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~ 529 (1004)
+..+ .+|...++|.++..+.+ ..+.++..+..++..++.. ..+..+.+.+...+.+.++.++......++.
T Consensus 327 r~~~-~~~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 327 RPLF-RKYAKNVFPSLLDRLKE-KKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred chhh-HHHHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 9887 89999999999999999 8889999999888888862 3456677888888999999999999998888
Q ss_pred HHHHhHhh--hHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHH
Q 001855 530 VADSSQEH--FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1004)
Q Consensus 530 l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~ 592 (1004)
.....+.. +..-...+.|.+....++ .+..+|..++++++.+.+.+|.+.+..++..+-
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D----~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHIND----TDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhccC----CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 88777632 334567888888877543 456789999999999999999777776665554
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0013 Score=71.22 Aligned_cols=295 Identities=18% Similarity=0.209 Sum_probs=178.4
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc
Q 001855 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1004)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 262 (1004)
..+...+.....+. +..||..|++.+..+.+.+. +-..+.+...+.+.+.++++|..|++++.-....+
T Consensus 197 ~~~~~~l~~~~~~~-D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQ-DFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHhcCC-CcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 34444455566676 99999999999988776431 11245666677778889999999999999888877
Q ss_pred hHHH------HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcC---
Q 001855 263 PRFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLD--- 332 (1004)
Q Consensus 263 ~~~~------~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~--- 332 (1004)
|... ....+..+..++..+ .|.+-.+|..|.+.+..+-... ..++.+.+.. ++..+..
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v--~D~sl~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRRkr~ 333 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAV--RDRSLSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRRKRT 333 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHH--hcCceeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhhhhh
Confidence 4211 123445555555555 3456778888888877765421 1222222221 1110100
Q ss_pred -C------CCCccccCCCC------CCc-cccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHH
Q 001855 333 -I------EDDPLWHSAET------EDE-DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAAL 398 (1004)
Q Consensus 333 -~------~~~~~~~~~~~------~~~-d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal 398 (1004)
- ....+|....+ .++ |+++.+....+ .+| . +...+.|.-..+|.+|+
T Consensus 334 ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sG---------ACG--A--------~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 334 AHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSG---------ACG--A--------LVHGLEDEFYEVRRAAV 394 (823)
T ss_pred cccchHHHHhcCCcccCccccccCchhhcccccccccccc---------ccc--e--------eeeechHHHHHHHHHHH
Confidence 0 01123433221 111 11111111000 011 1 11123445568999999
Q ss_pred HHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHH
Q 001855 399 IALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 478 (1004)
Q Consensus 399 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~ 478 (1004)
..++.++...+. +-..-+.++...++|+...||-.|..++..++..+. .-.+.++.+++.|.| .++++|
T Consensus 395 ~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D-~s~dvR 463 (823)
T KOG2259|consen 395 ASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLED-RSVDVR 463 (823)
T ss_pred HHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHh-cCHHHH
Confidence 999999987664 334567788888999999999999999999987642 234566777788888 888898
Q ss_pred HHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001855 479 AHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 479 ~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
.+. ..++..+.-.. ...+.-.+..+++.+... |+-|..++.|++.++...+.
T Consensus 464 e~l----~elL~~~~~~d-~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 464 EAL----RELLKNARVSD-LECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHH----HHHHHhcCCCc-HHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChh
Confidence 754 44444444222 244556666676666553 34467788999888876653
No 92
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0072 Score=67.21 Aligned_cols=289 Identities=18% Similarity=0.195 Sum_probs=174.3
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc
Q 001855 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1004)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 260 (1004)
....+++.+..++.+. ..-|...|.+++..+.... . ..+.| -+..+..++.++....|..|.+.|..++.
T Consensus 242 ~~s~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~-----~---r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHK-SEMVIYEAARAIVSLPNTN-----S---RELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred chhhHHHHHHHHHhch-hHHHHHHHHHHHhhccccC-----H---hhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4567778888888876 7777778877777665543 1 11222 45556666677888999999999999999
Q ss_pred cchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001855 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1004)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1004)
.+|.....--.++-+.+ .+.+..+...|+..+..-.. ..-+..++..+...+.+..++
T Consensus 312 ~~P~~v~~cN~elE~lI------td~NrsIat~AITtLLKTG~------------e~sv~rLm~qI~~fv~disDe---- 369 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLESLI------TDSNRSIATLAITTLLKTGT------------ESSVDRLMKQISSFVSDISDE---- 369 (865)
T ss_pred hCCccccccchhHHhhh------cccccchhHHHHHHHHHhcc------------hhHHHHHHHHHHHHHHhcccc----
Confidence 88865443222222211 23455565555544443322 112344444444444433221
Q ss_pred CCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001855 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1004)
Q Consensus 341 ~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1004)
......+.+..++..++. -...+++++...+.+ ...+.+.+.+.++..+++..++.-..-+..+
T Consensus 370 -------------FKivvvdai~sLc~~fp~--k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~L 434 (865)
T KOG1078|consen 370 -------------FKIVVVDAIRSLCLKFPR--KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHL 434 (865)
T ss_pred -------------ceEEeHHHHHHHHhhccH--HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 234456778888877762 334466777666654 4677888888888888886654333344444
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCccccc
Q 001855 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1004)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~ 498 (1004)
+.++..+- .+..+...|..+....+... ..+|...+.+.++ - .+..||.+|..++..+. .+.+.
T Consensus 435 CefIEDce------~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi----L-En~ivRaaAv~alaKfg--~~~~~-- 499 (865)
T KOG1078|consen 435 CEFIEDCE------FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI----L-ENAIVRAAAVSALAKFG--AQDVV-- 499 (865)
T ss_pred HHHHHhcc------chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh----h-hhhhhHHHHHHHHHHHh--cCCCC--
Confidence 44444332 23445555555555443211 0335544444433 2 56889999999999998 22222
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001855 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1004)
Q Consensus 499 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 532 (1004)
..+.+...+..++.+.+..+|+.|--.+..+-.
T Consensus 500 -l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 500 -LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred -ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 334555667778889999999998888877763
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.29 E-value=1.6e-06 Score=64.07 Aligned_cols=55 Identities=33% Similarity=0.464 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001855 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1004)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1004)
|.+|.+|+.+||.++...++...++++.+++.+...|+|+++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999875
No 94
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=0.02 Score=67.01 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=101.2
Q ss_pred cchHHHHHHHhhcCCChhH-HHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCc
Q 001855 141 WPELLPFMFQCVSSDSVKL-QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1004)
Q Consensus 141 ~~~ll~~L~~~l~~~~~~~-r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~ 219 (1004)
...++..+++.+.+..+.. ..++...++.+.....+.....+-.-+..+...+... +..+|.+.+.++++++...-..
T Consensus 268 ~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d 346 (1251)
T KOG0414|consen 268 SVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELRD 346 (1251)
T ss_pred cHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcc
Confidence 4667777777776654433 3445555555554443332222333344455555665 8999999999999988764222
Q ss_pred ch-HhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHH
Q 001855 220 AD-RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (1004)
Q Consensus 220 ~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l 298 (1004)
.. ......+-..++..+.+-+.+-++-+|..+++++..+......... ....++......+. |-+.-||..|+..+
T Consensus 347 ~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~--DkSslVRk~Ai~Ll 423 (1251)
T KOG0414|consen 347 EELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLE--DKSSLVRKNAIQLL 423 (1251)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccc--cccHHHHHHHHHHH
Confidence 12 2222333334788888877788999999999999999876543322 23455555554443 33667999999999
Q ss_pred HHHHHh
Q 001855 299 ITLAEA 304 (1004)
Q Consensus 299 ~~l~~~ 304 (1004)
..+...
T Consensus 424 ~~~L~~ 429 (1251)
T KOG0414|consen 424 SSLLDR 429 (1251)
T ss_pred HHHHhc
Confidence 988873
No 95
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0066 Score=67.01 Aligned_cols=429 Identities=17% Similarity=0.193 Sum_probs=223.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHH
Q 001855 28 ISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSL 104 (1004)
Q Consensus 28 l~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~---~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i 104 (1004)
-+.+-+++.+++-.|-+.+-..-- |.+.+...++.|+.- +.+-+++++-.+++. ++.+... -.++-+| --.+
T Consensus 26 k~~Lek~~~~~KIeamK~ii~~ml-nGe~~p~Llm~IiRfvlps~~~elKKLly~ywE-~vPKt~~--dgkl~~E-MILv 100 (948)
T KOG1058|consen 26 KEKLEKGDDEVKIEAMKKIIALML-NGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWE-LVPKTDS--DGKLLHE-MILV 100 (948)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHH-cCCCchHHHHHHhheeeccCchHHHHHHHHHHH-HccccCC--CcccHHH-HHHH
Confidence 344556677777777766544333 344455666777653 556666655444432 2222100 0011111 1122
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHH
Q 001855 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH 184 (1004)
Q Consensus 105 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 184 (1004)
.+.+-+-|.+ |+..+|-..-+-+.++-. | +-...++|.+.+++.+..+-+|..|..++..|...+ +.+.+..++
T Consensus 101 cna~RkDLQH-PNEyiRG~TLRFLckLkE---~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDape 174 (948)
T KOG1058|consen 101 CNAYRKDLQH-PNEYIRGSTLRFLCKLKE---P-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPE 174 (948)
T ss_pred HHHHhhhccC-chHhhcchhhhhhhhcCc---H-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHH
Confidence 3333344544 777788766555554322 2 355678888888888888888888888888877763 334455666
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchH
Q 001855 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1004)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 264 (1004)
++.-++. .+. ++..+..|+-.|...-. +.- +.++...+. .+.+-++......++.+...+...|.
T Consensus 175 Li~~fL~--~e~-DpsCkRNAFi~L~~~D~--------ErA---l~Yl~~~id-qi~~~~~~LqlViVE~Irkv~~~~p~ 239 (948)
T KOG1058|consen 175 LIESFLL--TEQ-DPSCKRNAFLMLFTTDP--------ERA---LNYLLSNID-QIPSFNDSLQLVIVELIRKVCLANPA 239 (948)
T ss_pred HHHHHHH--hcc-CchhHHHHHHHHHhcCH--------HHH---HHHHHhhHh-hccCccHHHHHHHHHHHHHHHhcCHH
Confidence 6655543 232 55666666544433211 100 011111111 11111233444445555555544444
Q ss_pred HHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCC
Q 001855 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1004)
Q Consensus 265 ~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1004)
.-..++..++.++. ..++.++..|...+..+.. . +..+.......+.++.+..+.
T Consensus 240 ~~~~~i~~i~~lL~------stssaV~fEaa~tlv~lS~----~-------p~alk~Aa~~~i~l~~kesdn-------- 294 (948)
T KOG1058|consen 240 EKARYIRCIYNLLS------STSSAVIFEAAGTLVTLSN----D-------PTALKAAASTYIDLLVKESDN-------- 294 (948)
T ss_pred HhhHHHHHHHHHHh------cCCchhhhhhcceEEEccC----C-------HHHHHHHHHHHHHHHHhccCc--------
Confidence 43444444444332 1244454444333333322 1 122233333333332221111
Q ss_pred CCccccCCcccchHHHHHHHHHHhc-CCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001855 345 EDEDAGESSNYSVGQECLDRLAIAL-GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1004)
Q Consensus 345 ~~~d~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1004)
... .-.++++.... ..+.++..+.--+...+++++..+|.-++...-.++.. ..+.+++..+
T Consensus 295 --------nvk---lIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss------rNvediv~~L 357 (948)
T KOG1058|consen 295 --------NVK---LIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS------RNVEDIVQFL 357 (948)
T ss_pred --------chh---hhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh------ccHHHHHHHH
Confidence 111 11233333221 11344544444455678889999998888766666543 2344444444
Q ss_pred HhhC-------CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCccc
Q 001855 424 LNSF-------RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1004)
Q Consensus 424 ~~~l-------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 496 (1004)
.+.+ +|++..-|..-..++...+-.++ .+...+++.+++.+.| .|+........++...++.++.
T Consensus 358 kke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-----~~aatvV~~ll~fisD-~N~~aas~vl~FvrE~iek~p~-- 429 (948)
T KOG1058|consen 358 KKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-----EVAATVVSLLLDFISD-SNEAAASDVLMFVREAIEKFPN-- 429 (948)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHHHhhcCh-----HHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhCch--
Confidence 4333 34556678888888877776654 4678999999999999 8887777777888887776652
Q ss_pred ccCchHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhH
Q 001855 497 LTPYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 497 l~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
+ -..++..++..+.. ...++...++..+|.-+...+
T Consensus 430 L---r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 430 L---RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred H---HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 1 12345555544432 234556667777776655444
No 96
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0065 Score=66.46 Aligned_cols=127 Identities=13% Similarity=0.261 Sum_probs=94.0
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC
Q 001855 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1004)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 492 (1004)
+.+.+.+..+.+.+.+..+.+|..|+..+..++..-.. +....+ ...++..|+..++..+|..|...|..+|+.-
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 34566677778888999999999999999988875321 111233 4555666773378899999999999998654
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHH
Q 001855 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1004)
Q Consensus 493 ~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 551 (1004)
+ ...|+..+++.+...+..+|+....-++.+++....+..=|.+.++..+..
T Consensus 401 N-------ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiri 452 (938)
T KOG1077|consen 401 N-------AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRI 452 (938)
T ss_pred h-------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 4 356788888888889999999998888888887776655566666654443
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0009 Score=74.35 Aligned_cols=428 Identities=16% Similarity=0.182 Sum_probs=246.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
.+...+....++++..|..|-..+..+.- +.++.+++.-+. ++.++.+|.-|+++..++...+. . -.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~----~---~~ 156 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP----D---LV 156 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh----h---hc
Confidence 45566677788899999999887654433 123344444332 47789999999999998876641 1 11
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcc----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHh
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~----~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~ 175 (1004)
....+...|-+.+.+ .++.|-..+..++..|....-. .... .++..++..+.. ..--+-+.++..+.++.+
T Consensus 157 ~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~-~~~~~l~~~~~~~lL~al~e---c~EW~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPS-VNLLELNPQLINKLLEALNE---CTEWGQIFILDCLAEYVP 231 (734)
T ss_pred cccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcCC
Confidence 122333445555554 5777766677788888775422 1223 333333333322 222234667777777776
Q ss_pred hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001855 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1004)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L 255 (1004)
.+- .....++..+...++.. ++.|...+.+.+...+..+.. ....++..+-+.+...+.. .++...-++.-+
T Consensus 232 ~d~-~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~-----~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi 303 (734)
T KOG1061|consen 232 KDS-REAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ-----VNELLFKKVAPPLVTLLSS-ESEIQYVALRNI 303 (734)
T ss_pred CCc-hhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-----HHHHHHHHhcccceeeecc-cchhhHHHHhhH
Confidence 543 24667777777778887 888999999999998887621 1112222222223323323 337777888888
Q ss_pred HHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCC
Q 001855 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 335 (1004)
Q Consensus 256 ~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 335 (1004)
.-+....|+.+......++ ++ ..+.-.++..=++++..++.. ..+.+++..+..+-.+.
T Consensus 304 ~lil~~~p~~~~~~~~~Ff---~k----ynDPiYvK~eKleil~~la~~------------~nl~qvl~El~eYatev-- 362 (734)
T KOG1061|consen 304 NLILQKRPEILKVEIKVFF---CK----YNDPIYVKLEKLEILIELAND------------ANLAQVLAELKEYATEV-- 362 (734)
T ss_pred HHHHHhChHHHHhHhHeee---ee----cCCchhhHHHHHHHHHHHhhH------------hHHHHHHHHHHHhhhhh--
Confidence 8888888876654433222 11 111233555566666666551 12334444444332211
Q ss_pred CccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001855 336 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 415 (1004)
Q Consensus 336 ~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 415 (1004)
+....+.+..+++.++.... +. ...+..+.+.+.-....+-..++..+..+...++. .
T Consensus 363 ---------------D~~fvrkaIraig~~aik~e-~~--~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~----~ 420 (734)
T KOG1061|consen 363 ---------------DVDFVRKAVRAIGRLAIKAE-QS--NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN----K 420 (734)
T ss_pred ---------------CHHHHHHHHHHhhhhhhhhh-hh--hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC----c
Confidence 11123446667777766553 22 44555555555432222333344444544444432 2
Q ss_pred HHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCc
Q 001855 416 LEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1004)
Q Consensus 416 l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 494 (1004)
.+.+++.+...+. =.+|..|.+-.|.+|++++.+++ ...++..+++.+.| +...|+..-..+.-.++-..++
T Consensus 421 ~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~d-E~~~Vql~LLta~ik~Fl~~p~ 493 (734)
T KOG1061|consen 421 YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKD-ETAEVQLELLTAAIKLFLKKPT 493 (734)
T ss_pred hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhccc-chHHHHHHHHHHHHHHHhcCCc
Confidence 2445555555443 24788999999999999998865 45678888888888 7788887776666665543332
Q ss_pred ccccCchHHHHHHHHHHh--hcCChhHHHHHHHHHH
Q 001855 495 EILTPYLDGIVSKLLVLL--QNGKQMVQEGALTALA 528 (1004)
Q Consensus 495 ~~l~~~~~~i~~~l~~~l--~~~~~~vr~~a~~~l~ 528 (1004)
+ -+.++..++... +..++.+|..++.--.
T Consensus 494 ~-----tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~R 524 (734)
T KOG1061|consen 494 E-----TQELLQGVLPLATADTDNPDLRDRGLIYWR 524 (734)
T ss_pred c-----HHHHHHHHHhhhhccccChhhhhhHHHHHH
Confidence 2 244555555432 2335678877665433
No 98
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.24 E-value=0.0034 Score=72.01 Aligned_cols=372 Identities=14% Similarity=0.151 Sum_probs=201.4
Q ss_pred chHhHHHHHHHHHHHHHhcccCC--CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhh
Q 001855 116 SAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL 193 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 193 (1004)
.+.-+| .+..++..++...-.. -.-..+++.|..++.+++.+....++.+|..++-.....-.-.-..+++.+.+.+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 344444 4556666666532110 0224678889999988888888888888887765432211112345777778888
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCcchHhHH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc--hHHHHHh
Q 001855 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFLRRQ 269 (1004)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~ 269 (1004)
..+ +..++..++++|.++...-. ....+ .+++|.++..+ . ++..+..++.+|..+.... ...|. +
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~~---~R~~mV~~GlIPkLv~LL----~--d~~~~~val~iLy~LS~dd~~r~~f~-~ 409 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDPE---LRSQMVSLGLIPKLVELL----K--DPNFREVALKILYNLSMDDEARSMFA-Y 409 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCHH---HHHHHHHCCCcHHHHHHh----C--CCchHHHHHHHHHHhccCHhhHHHHh-h
Confidence 886 88999999999998876421 12222 23456555544 3 3456666777777775422 11121 1
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccc
Q 001855 270 LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDA 349 (1004)
Q Consensus 270 ~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~ 349 (1004)
. +.++.+.+.+... .++.+...++.+...++..+.....+.+ ..-++.++.......
T Consensus 410 T-dcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~------g~gL~~L~~ra~~~~--------------- 466 (708)
T PF05804_consen 410 T-DCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMCE------GNGLQSLMKRALKTR--------------- 466 (708)
T ss_pred c-chHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHh------cCcHHHHHHHHHhcc---------------
Confidence 1 2344444433221 2344444455555666553211111111 112333333222111
Q ss_pred cCCcccchHHHHHHHHHHhcCCCcchHHHHHHHH---HhhcC-CChhHHHHHHHHHHHHHhhc-HH-HHHHhHH--HHHH
Q 001855 350 GESSNYSVGQECLDRLAIALGGNTIVPVASEQLP---AYLAA-PEWQKHHAALIALAQIAEGC-AK-VMVKNLE--QVLS 421 (1004)
Q Consensus 350 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~~-~~~~~r~aal~~l~~l~~~~-~~-~~~~~l~--~i~~ 421 (1004)
.....+++..++.+-|+ .-..+.+++. ..+.+ .++ +..+.++|.++.-. ++ .....+. .++|
T Consensus 467 -----D~lLlKlIRNiS~h~~~--~k~~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp 536 (708)
T PF05804_consen 467 -----DPLLLKLIRNISQHDGP--LKELFVDFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLP 536 (708)
T ss_pred -----cHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHH
Confidence 02344566666665432 1122222322 23333 333 45555666665432 11 2223332 3667
Q ss_pred HHHhhCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhh--hhhhHHHHHhhcCCC-CChhHHHHHHHHHHHHhhcCCccc
Q 001855 422 MVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQF--HPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEI 496 (1004)
Q Consensus 422 ~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~ 496 (1004)
.+...|... .+.+.-.+...+|.++..-.. ... -..+++.+++.|+.. .+.+.....+.++..++.+-....
T Consensus 537 ~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~---A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~ 613 (708)
T PF05804_consen 537 WLKDLLKPGASEDDLLLEVVILLGTLASDPEC---APLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETRE 613 (708)
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHHCCHHH---HHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHH
Confidence 777666432 345666667777877753221 222 246777777776541 245677788889999887643211
Q ss_pred ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 497 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 497 l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
..-.-..+...++.++++.+..+|..+-.++..++..-+
T Consensus 614 ~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 614 VLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 111114577889999999999999988888888776543
No 99
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.0019 Score=67.08 Aligned_cols=475 Identities=12% Similarity=0.113 Sum_probs=221.4
Q ss_pred CCChhHHHHHHHHHHHhhhhHhhh-ccccHHHHH--------H-HHHHhhcCCCChHHHHHHHHHHHHHHHhhc------
Q 001855 154 SDSVKLQESAFLIFAQLSQYIGDT-LTPHLKHLH--------A-VFLNCLTNSNNPDVKIAALNAVINFIQCLT------ 217 (1004)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~--------~-~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~------ 217 (1004)
+....+|.+|+.++....+.++.. +-.|+..++ | .+.-.|+|+ +++.|..|++.+..+.+.-.
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~-~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDP-SPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCC-ChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345689999999999888876543 111221111 1 223357887 99999999999988876421
Q ss_pred CcchHhHHHh-------hHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHccchHH-HH-HhHHHHHHHHHHhhcCCCcc
Q 001855 218 SSADRDRFQD-------LLPLMMRTLTESL-NNGNEATAQEALELLIELAGTEPRF-LR-RQLVDVVGSMLQIAEAESLE 287 (1004)
Q Consensus 218 ~~~~~~~~~~-------~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~ 287 (1004)
.......|.. .+-.....+...+ ....+.+...+++||..++...|-. ++ ..+..+++.+-..+ ++.+
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i--~~~d 163 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYI--RHKD 163 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hcCC
Confidence 0000111110 0111111222222 2345678889999999999876521 11 23334444444444 3457
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH--hhc-CCCCCccccCC----CCC---CccccCC--ccc
Q 001855 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS--MLL-DIEDDPLWHSA----ETE---DEDAGES--SNY 355 (1004)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~l~-~~~~~~~~~~~----~~~---~~d~~~~--~~~ 355 (1004)
..+|..++-++..++...+ ..|-+...+..-.. .+. .-...++|+.+ +.+ ++.++.. +..
T Consensus 164 ~~v~vs~l~~~~~~v~t~~--------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 235 (728)
T KOG4535|consen 164 VNVRVSSLTLLGAIVSTHA--------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPC 235 (728)
T ss_pred CChhhHHHHHHHHHHhcCC--------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCc
Confidence 7889999988888877411 11111111110000 000 00011233311 000 0000000 000
Q ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001855 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYLAA--PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1004)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1004)
... .....+....+.+. -........+.+ .-...|..++..+..++...+- ...++-++...+..++.+..|.
T Consensus 236 ~~i-~~~~~i~~~~~~~s---~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~ 310 (728)
T KOG4535|consen 236 WLI-RLCISIVVLPKEDS---CSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSM-TQAYLMELGRVICKCMGEADPS 310 (728)
T ss_pred cee-eeeeeeeecCCccc---cchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChH
Confidence 000 00000000000000 000111111111 1124566677777777665442 2345566667777777777777
Q ss_pred HHHHHHHHHHHhhhhhchhHH-hh---------hh-------------------------------------------hh
Q 001855 434 VRWAAINAIGQLSTDLGPDLQ-NQ---------FH-------------------------------------------PQ 460 (1004)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~-~~---------~~-------------------------------------------~~ 460 (1004)
++..+..++..+...+..... +. +. ..
T Consensus 311 ~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T 390 (728)
T KOG4535|consen 311 IQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT 390 (728)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh
Confidence 777777776665544321100 00 00 01
Q ss_pred hHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhH-
Q 001855 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ- 539 (1004)
Q Consensus 461 ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~- 539 (1004)
..+..+..-.|.++.-++.+|.+++..++-+.+......+..+....++..+.+..-..|+.++.++|++..+.-..+.
T Consensus 391 ~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps 470 (728)
T KOG4535|consen 391 LCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPT 470 (728)
T ss_pred hhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCC
Confidence 1111111112212222444444444444332222222334445555556666666677889999999998877654322
Q ss_pred --hhHhhhhHHHHHHH-h--hcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-HhcC-CCCCCCchhhH
Q 001855 540 --KYYDAVMPFLKAIL-V--NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGS-QMETDDPTTSY 612 (1004)
Q Consensus 540 --~~~~~i~~~l~~~l-~--~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~-~~~~~~~~~~~ 612 (1004)
.+...+...++..+ . +..+.+...+|..++++++.+...+. ....+-..++++.-.. +.+. ..+..-+++=.
T Consensus 471 ~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq-~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WN 549 (728)
T KOG4535|consen 471 PDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ-PIEKPTFAEIIEESIQALISTVLTEAAMKVRWN 549 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH-HhhhccHHHHHHHHHHhcccceecccccccchH
Confidence 24444443333221 1 12233455688889999998876553 1222233444443332 2221 11112234444
Q ss_pred HHHHHHHHHhHh--ccCcccchhhhhHHHHHHccc
Q 001855 613 MLQAWARLCKCL--GQDFLPYMSVVMPPLLQSAQL 645 (1004)
Q Consensus 613 ~~~~l~~l~~~~--~~~~~~~l~~i~~~ll~~~~~ 645 (1004)
+..+++++.+.- +-+-.++-+.+.+.|+..+..
T Consensus 550 aCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 550 ACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred HHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 555566665431 112246777788877777643
No 100
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0028 Score=68.78 Aligned_cols=292 Identities=17% Similarity=0.177 Sum_probs=170.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhh-h-
Q 001855 236 LTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM-R- 313 (1004)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~- 313 (1004)
+.....+.|..+|..|++.|..+.+.. .+.. .+.....+.+ .|.++.+|..|++++...... .|... +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~---~~Y~~A~~~l--sD~~e~VR~aAvqlv~v~gn~---~p~~~e~e 272 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KLSK---ACYSRAVKHL--SDDYEDVRKAAVQLVSVWGNR---CPAPLERE 272 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--cccH---HHHHHHHHHh--cchHHHHHHHHHHHHHHHHhc---CCCcccch
Confidence 444556789999999999999887722 1211 2233333344 466889999998877776652 32110 0
Q ss_pred -cchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCC--C
Q 001855 314 -KLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP--E 390 (1004)
Q Consensus 314 -~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~--~ 390 (1004)
.-.......+..+...+.+. ++..+--|.+.|+.+...- +.+ +.+.+.+-+.+. -
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~-----------------sl~VRV~AaK~lG~~~~vS--ee~---i~QTLdKKlms~lRR 330 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDR-----------------SLSVRVEAAKALGEFEQVS--EEI---IQQTLDKKLMSRLRR 330 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcC-----------------ceeeeehHHHHhchHHHhH--HHH---HHHHHHHHHhhhhhh
Confidence 11123344444444444332 3445555667776654322 122 222333222221 1
Q ss_pred h---hHHHHHHHHHHHHHhh-------cHHHHHHhHHHHH-----HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001855 391 W---QKHHAALIALAQIAEG-------CAKVMVKNLEQVL-----SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1004)
Q Consensus 391 ~---~~r~aal~~l~~l~~~-------~~~~~~~~l~~i~-----~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1004)
| +.|-..+..=|..+.+ ..+.....-..++ ..++.++.|+--.||.+|...+..++..-+
T Consensus 331 kr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----- 405 (823)
T KOG2259|consen 331 KRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----- 405 (823)
T ss_pred hhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC-----
Confidence 1 1122222222211111 1111111112233 466778899999999999999999987543
Q ss_pred hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
.+....+..+..+++| +...||..|+.+|..+..+.. .-++.++.++..+.+.+.++|+.+-..++..--...
T Consensus 406 ~FA~~aldfLvDMfND-E~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~ 478 (823)
T KOG2259|consen 406 GFAVRALDFLVDMFND-EIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALRELLKNARVSDL 478 (823)
T ss_pred CcHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Confidence 3567788889999999 888999999999999987743 235567778888899999999887777665321111
Q ss_pred hhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhC
Q 001855 536 EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1004)
Q Consensus 536 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~ 580 (1004)
.-++.++..+.+.+.....+ |...+.|++.++..-+
T Consensus 479 ----~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 479 ----ECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHR 514 (823)
T ss_pred ----HHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccCh
Confidence 23445555555555542221 3346789999887665
No 101
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.19 E-value=0.00027 Score=73.31 Aligned_cols=205 Identities=12% Similarity=0.179 Sum_probs=144.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHH-HHHHHHhhcHHHHHHhHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhHHh
Q 001855 378 ASEQLPAYLAAPEWQKHHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQN 455 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~-~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1004)
+...+.+.-.+.....|..|+. ..+-++++.-.....|+..++..++..|.| .+...|..|+..|+.+++.-+..+ .
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l-~ 366 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL-F 366 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-h
Confidence 3344444444446677778877 555566666666778999999999999998 788999999999999999877666 6
Q ss_pred hhhhhhHHHHHhhcCCCCChhHHHHHHH-HHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001855 456 QFHPQVLPALAGAMDDFQNPRVQAHAAS-AVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~-~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 534 (1004)
.+....+..+++.-.| .++.|-..|.. ++..+....+.. .+..|.+.+ ...+...-..++.++..++..+
T Consensus 367 DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~----~I~~i~~~I----lt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQ----CIVNISPLI----LTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred chHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchh----HHHHHhhHH----hcCcchHHHHHHHHHHHHHhhc
Confidence 7778888888888888 55555444444 444444444321 222333333 3344444556677778887776
Q ss_pred H-hhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHH
Q 001855 535 Q-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1004)
Q Consensus 535 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 596 (1004)
. +.+...++.+.|.+++...+ ....+|..++-|+-.+...+|.+.+.||+.++-..-+
T Consensus 438 ~~EeL~~ll~diaP~~iqay~S----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~ 496 (516)
T KOG2956|consen 438 SAEELLNLLPDIAPCVIQAYDS----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKL 496 (516)
T ss_pred CHHHHHHhhhhhhhHHHHHhcC----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHH
Confidence 5 45678889999999888644 4557899999999999999998889999887654433
No 102
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.18 E-value=0.0022 Score=70.05 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=141.3
Q ss_pred hhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHh----hcC-ChhHHHHHHHHHHH
Q 001855 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL----QNG-KQMVQEGALTALAS 529 (1004)
Q Consensus 455 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l----~~~-~~~vr~~a~~~l~~ 529 (1004)
.++...++..++..+.. +...--+..+.|+.+++.... +.+.|+...+++.|...+ +++ ++..-...+++++.
T Consensus 21 ~p~~~~ll~~Lf~~i~~-~~s~ENeylMk~iMRvl~~~~-e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEK-PGSAENEYLMKCIMRVLSVLQ-EDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp TCCHHHHHHHHHHHHHT-T-STC-HHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 56778888888887754 211112344566666666555 446688888888877655 333 57888899999999
Q ss_pred HHHHhHh----hhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH--HhcCCC
Q 001855 530 VADSSQE----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--LQGSQM 603 (1004)
Q Consensus 530 l~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~--l~~~~~ 603 (1004)
+++...+ .+..+-+.++|.+..+|+++ ..+.-..++..++.+....+...+.+....+++.++. ++..
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d----V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~-- 172 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQD----VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER-- 172 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS--
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc--
Confidence 9987543 23357788899999998763 2344555677777776554423344444445555554 2321
Q ss_pred CCCCchhhHHHHHHHHHHhHhccCcc--cchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCceeeee
Q 001855 604 ETDDPTTSYMLQAWARLCKCLGQDFL--PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIK 681 (1004)
Q Consensus 604 ~~~~~~~~~~~~~l~~l~~~~~~~~~--~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 681 (1004)
.. --.++.+.+..+.+..+..+. .++..++...-+.++++.+ |
T Consensus 173 ~g---niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~------------------D-------------- 217 (435)
T PF03378_consen 173 RG---NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN------------------D-------------- 217 (435)
T ss_dssp TT---THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC------------------H--------------
T ss_pred CC---CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc------------------c--------------
Confidence 11 124556666666666555543 5666676666555554321 0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcc-cccccHHHHHHHhccccCccCCHHHHHHHHHhHHHH
Q 001855 682 TSVLEEKATACNMLCCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 740 (1004)
Q Consensus 682 ~~~~~~~~~a~~~l~~l~~~~~~-~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l 740 (1004)
..++.+|..+...++. .+.||+.+++..++..+..+..+...+.-+..++.+
T Consensus 218 -------~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 218 -------HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp -------HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 2367789999999985 689999999999998887654555555544444433
No 103
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=0.021 Score=63.25 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhc
Q 001855 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1004)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l 932 (1004)
+.+|..+.-.++.++...|..+.|++++++..++. +.+..+-...++.+..++.....++.+.+++++|.++..+
T Consensus 711 E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~----s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS----STDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred chhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888999999999999999999988877765 5566677778889999998888888888898888876543
No 104
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0091 Score=65.39 Aligned_cols=315 Identities=15% Similarity=0.183 Sum_probs=181.6
Q ss_pred HhhcCCChhHHHHHHHHHHHhhhh-HhhhccccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHh
Q 001855 150 QCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1004)
Q Consensus 150 ~~l~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 227 (1004)
.-+.+.++.....|+.+++.+.+. +.+.+. +.+-.++ -++ ...-||..|.-|+..+....++.... .
T Consensus 118 nDL~srn~~fv~LAL~~I~niG~re~~ea~~---~DI~KlL----vS~~~~~~vkqkaALclL~L~r~spDl~~~---~- 186 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIANIGSREMAEAFA---DDIPKLL----VSGSSMDYVKQKAALCLLRLFRKSPDLVNP---G- 186 (938)
T ss_pred hhhhcCCcHHHHHHHHHHHhhccHhHHHHhh---hhhHHHH----hCCcchHHHHHHHHHHHHHHHhcCccccCh---h-
Confidence 334566777888899999888764 333322 2332333 333 36789999999999998875432111 1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCc-----------chHHHHHHHH
Q 001855 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL-----------EEGTRHLAIE 296 (1004)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~-----------~~~vr~~a~~ 296 (1004)
.+.+.+.+.+.+.+-.+..++..++..++...++.....++..+.-+..+....+. .+-.....+.
T Consensus 187 ---~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~r 263 (938)
T KOG1077|consen 187 ---EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLR 263 (938)
T ss_pred ---hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHH
Confidence 34555666676777777778888888888887776665555444444443322111 1223333444
Q ss_pred HHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccc-hHHHHHHHHHHhcC-CCcc
Q 001855 297 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS-VGQECLDRLAIALG-GNTI 374 (1004)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~-~a~~~l~~l~~~~~-~~~~ 374 (1004)
++..+-.. .. +.....++..+-..+....+.+.-. +-....... ...+++. ++.++. .+..
T Consensus 264 lLq~~p~~--~D-------~~~r~~l~evl~~iLnk~~~~~~~k-------~vq~~na~naVLFeaI~-l~~h~D~e~~l 326 (938)
T KOG1077|consen 264 LLQIYPTP--ED-------PSTRARLNEVLERILNKAQEPPKSK-------KVQHSNAKNAVLFEAIS-LAIHLDSEPEL 326 (938)
T ss_pred HHHhCCCC--CC-------chHHHHHHHHHHHHHhccccCcccc-------chHhhhhHHHHHHHHHH-HHHHcCCcHHH
Confidence 44333110 01 1112223333322232222111000 000000001 1112222 223332 2356
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhch
Q 001855 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGP 451 (1004)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 451 (1004)
....+..+.+++++.+...|+-|+..+..++..-. +.+..| .+.++..|+ +++..||+.|...|-.++..
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~mcD~--- 399 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYAMCDV--- 399 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHhch---
Confidence 66677788889999999999999988888876522 233333 455666676 78899999999999888864
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHH
Q 001855 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1004)
Q Consensus 452 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l 508 (1004)
.....++..+++.|.. .+..+|+....=+.-+.+...++ ...|.+-+++.+
T Consensus 400 ----~Nak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtD-y~WyVdviLqLi 450 (938)
T KOG1077|consen 400 ----SNAKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATD-YSWYVDVILQLI 450 (938)
T ss_pred ----hhHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHH
Confidence 3456677777777777 77888888777777777777644 566766655544
No 105
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.025 Score=63.14 Aligned_cols=379 Identities=15% Similarity=0.148 Sum_probs=206.4
Q ss_pred HHHHHHHHHhcc-----cCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCC
Q 001855 124 LCDTVSELASNI-----LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNN 198 (1004)
Q Consensus 124 ~~~~l~~i~~~~-----~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 198 (1004)
+..++.+|.... ++...-.+++=.+..++++.+...|.....+++.+.....+.+ -+.+.+.+-+... +
T Consensus 40 c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi-----ivtsslmkD~t~~-~ 113 (865)
T KOG1078|consen 40 CRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI-----IVTSSLMKDMTGK-E 113 (865)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh-----hhhHHHHhhccCC-C
Confidence 445555554432 2223445677778888999999888887777776655433322 1223333333333 6
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHH
Q 001855 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML 278 (1004)
Q Consensus 199 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~ 278 (1004)
...|..|+++|..++..- .++.+-..+.+++-+..+.+...++-.=..+..........+...+.+..
T Consensus 114 d~yr~~AiR~L~~I~d~~-----------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~- 181 (865)
T KOG1078|consen 114 DLYRAAAIRALCSIIDGT-----------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAV- 181 (865)
T ss_pred cchhHHHHHHHHhhcCcc-----------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhcc-
Confidence 788889998888776531 12233344445555556655555543333344444454455444444422
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchH
Q 001855 279 QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1004)
Q Consensus 279 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a 358 (1004)
.+.+.-+...|+.++..+-++. .-.+.+++..+... ...++- ..+...+.+
T Consensus 182 -----~s~~~m~QyHalglLyqirk~d----------rla~sklv~~~~~~---~~~~~~-----------A~~~lir~~ 232 (865)
T KOG1078|consen 182 -----NSDNIMVQYHALGLLYQIRKND----------RLAVSKLVQKFTRG---SLKSPL-----------AVCMLIRIA 232 (865)
T ss_pred -----CcHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHccc---cccchh-----------HHHHHHHHH
Confidence 1122334556677777765521 00122222222210 000000 000000112
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHH
Q 001855 359 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1004)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 438 (1004)
..+++.- ......+.+++..++.+....+.+-|..++-.+....+..+.+ -+..+...+..+.+.+|.+|
T Consensus 233 ~~~l~~~------~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaA 302 (865)
T KOG1078|consen 233 SELLKEN------QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAA 302 (865)
T ss_pred HHHhhhc------ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHH
Confidence 2222211 2345568889999999988888888888888777666554333 55566666788999999999
Q ss_pred HHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChh
Q 001855 439 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQM 518 (1004)
Q Consensus 439 ~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~ 518 (1004)
..+|.+++...+.... ... ..+-..+.| .| |.-|..++..+++....+. .+.++..+...+.+-+..
T Consensus 303 vRtLnkvAm~~P~~v~--~cN---~elE~lItd-~N---rsIat~AITtLLKTG~e~s----v~rLm~qI~~fv~disDe 369 (865)
T KOG1078|consen 303 VRTLNKVAMKHPQAVT--VCN---LDLESLITD-SN---RSIATLAITTLLKTGTESS----VDRLMKQISSFVSDISDE 369 (865)
T ss_pred HHHHHHHHHhCCcccc--ccc---hhHHhhhcc-cc---cchhHHHHHHHHHhcchhH----HHHHHHHHHHHHHhcccc
Confidence 9999999987654331 111 122233444 33 4456677777777665333 344555555555544444
Q ss_pred HHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhh
Q 001855 519 VQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1004)
Q Consensus 519 vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~ 579 (1004)
.+..+..++.+++..++. -...++++|.+.+.+. ...+.+...++++..++...
T Consensus 370 FKivvvdai~sLc~~fp~----k~~~~m~FL~~~Lr~e---Gg~e~K~aivd~Ii~iie~~ 423 (865)
T KOG1078|consen 370 FKIVVVDAIRSLCLKFPR----KHTVMMNFLSNMLREE---GGFEFKRAIVDAIIDIIEEN 423 (865)
T ss_pred ceEEeHHHHHHHHhhccH----HHHHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHhC
Confidence 455556666666655442 2345566666766552 33455666777777666533
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.15 E-value=2.2e-06 Score=63.32 Aligned_cols=55 Identities=29% Similarity=0.351 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHH
Q 001855 937 QDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1004)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l 997 (1004)
+.||..|+++||.++...+..+.++.+++++.|...|+++ +..+|.+|+.|||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~------~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD------DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS------SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999999775 459999999999976
No 107
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.14 E-value=1.5e-05 Score=74.40 Aligned_cols=128 Identities=22% Similarity=0.331 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh----------------hcccc
Q 001855 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD----------------TLTPH 181 (1004)
Q Consensus 118 ~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~----------------~~~~~ 181 (1004)
+.+++.++.+++.|+.+++| ..||++++.+.+.+++ ++.....++.+|..+.+++.+ .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999 7999999999999887 477778899999999888653 12335
Q ss_pred HHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001855 182 LKHLHAVFLNCLTNSNN---PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1004)
Q Consensus 182 ~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L 255 (1004)
.+.+++.+.+.+....+ ..+...+++|+.+++.+.+ ...+.. ..+++.+++.++ +++.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~----~~~i~~--~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP----IELIIN--SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-----HHHHHS--SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC----HHHhcc--HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 67788888887776522 7889999999999999762 332222 135666666664 455688888876
No 108
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.002 Score=71.81 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=130.2
Q ss_pred hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhch
Q 001855 375 VPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGP 451 (1004)
Q Consensus 375 ~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1004)
+..++|.+..++++ .+.....-|+.|+..+++.++....-.+. ..+|.++..| .=..-.|-+.++.+|..+...-+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 34566777777776 46888899999999999999875543332 2556665544 334566888889999888877665
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001855 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1004)
Q Consensus 452 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 531 (1004)
.+. -..-+..++..+.= -...++..|+....++|..+.++.+ .|+-+.+|.|..+++..+.+.-+.++.|+..++
T Consensus 289 AiL---~AG~l~a~LsylDF-FSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 289 AIL---QAGALSAVLSYLDF-FSIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHH---hcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 442 12223333333332 2357888899999999999987766 566778899999999999999999999999999
Q ss_pred HHhHh---hhHhhH-hhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhh
Q 001855 532 DSSQE---HFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1004)
Q Consensus 532 ~~~~~---~~~~~~-~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~ 578 (1004)
..+.. .+...+ ..++....+++......=...++...+..+..++..
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence 87653 233222 344555555554321111222333345555555443
No 109
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.14 E-value=0.04 Score=64.80 Aligned_cols=167 Identities=13% Similarity=0.213 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHH----hh---------cCC-ChhHHHHHHHHHHH
Q 001855 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQ----CV---------SSD-SVKLQESAFLIFAQ 169 (1004)
Q Consensus 104 i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~----~l---------~~~-~~~~r~~al~~l~~ 169 (1004)
+...|.+.+.+ +...+|+.++.++..|++........ .++..+.. .+ .++ -..+|+.+..+|+.
T Consensus 78 ~~e~L~~~~~~-~~we~rhg~~i~lrei~~~h~~~~~~-~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 78 FLEELVNDLFE-PQWEIRHGAAIALREILKTHGDSLSY-ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHhcC-chhhhhcCcchhhhhHHHHhcchhhH-HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 34456666665 78899999999999988765543222 22322221 11 111 13689999999999
Q ss_pred hhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHH
Q 001855 170 LSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ 249 (1004)
Q Consensus 170 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 249 (1004)
+.+...+. .+...+.++.+.+..+ ++++|...+..+...+... .+....+++.++..+.+.+++.+.+++.
T Consensus 156 ~l~~~~~s---~~~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air-----~d~l~~~~~~vl~~~i~~L~ds~ddv~~ 226 (1549)
T KOG0392|consen 156 YLKHMDES---LIKETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIR-----QDLLFQLLNLVLDFVIEGLEDSDDDVRS 226 (1549)
T ss_pred HHHhhhhH---hhHHHHHHHHHHHcCc-chhheechHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhcchHHHH
Confidence 98887665 3455666777777776 8899987776666555532 2333467778888888888888999999
Q ss_pred HHHHHHHHHHccchHHHHHhHHHHHHHHHHhh
Q 001855 250 EALELLIELAGTEPRFLRRQLVDVVGSMLQIA 281 (1004)
Q Consensus 250 ~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~ 281 (1004)
.|...+..+...+.+.....+..++..++..+
T Consensus 227 ~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l 258 (1549)
T KOG0392|consen 227 VAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFL 258 (1549)
T ss_pred HHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHH
Confidence 99999988887775554555556665555544
No 110
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.0057 Score=68.42 Aligned_cols=170 Identities=15% Similarity=0.260 Sum_probs=109.7
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHHHHHhhhhH--h-h-hccc-cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001855 145 LPFMFQCVSSD-SVKLQESAFLIFAQLSQYI--G-D-TLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1004)
Q Consensus 145 l~~L~~~l~~~-~~~~r~~al~~l~~l~~~~--~-~-~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1004)
+..|++.++.. ++.. .+..+..+|+.+ + + .+.. -++.++|.+...|++..+.++...|++||..+.+.++.
T Consensus 169 ~kkLL~gL~~~~Des~---Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQ---QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHhccccCChHH---HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 55566666654 4432 456666666653 2 2 1221 37889999999999987899999999999999998754
Q ss_pred cchHhHHH--hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHh--HHHHHHHHHHhhcCCCcchHHHHHH
Q 001855 219 SADRDRFQ--DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLEEGTRHLA 294 (1004)
Q Consensus 219 ~~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~vr~~a 294 (1004)
. ...+. ..+|.++..|.. -+.-++..++++.|-.+.+.++..+-.- +-.++.++ ... .-.+.+.|
T Consensus 246 S--~a~vV~~~aIPvl~~kL~~---IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFF-----Si~aQR~A 314 (1051)
T KOG0168|consen 246 S--SAIVVDEHAIPVLLEKLLT---IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFF-----SIHAQRVA 314 (1051)
T ss_pred h--hheeecccchHHHHHhhhh---hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHH-----HHHHHHHH
Confidence 2 12222 357777777664 2466889999999999988887655331 11222111 111 23456677
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC
Q 001855 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (1004)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 334 (1004)
+..-..+|+. .+ ..-..++-..+|.+.+.+.+.+
T Consensus 315 laiaaN~Cks---i~---sd~f~~v~ealPlL~~lLs~~D 348 (1051)
T KOG0168|consen 315 LAIAANCCKS---IR---SDEFHFVMEALPLLTPLLSYQD 348 (1051)
T ss_pred HHHHHHHHhc---CC---CccchHHHHHHHHHHHHHhhcc
Confidence 7777777773 21 2334577788888888887653
No 111
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.038 Score=63.26 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 21 ~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
+.-+..++..+.+-|.+.++--.-+|..+.+.+|+..+..+-.+..+ ++|+.+|.+|...+..+= -+
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~-----------~~ 122 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR-----------VK 122 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC-----------hH
Confidence 45667778888888999999999999999988887654433344433 889999999998886532 13
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch--HHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 001855 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE--LLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~--ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 173 (1004)
+....+-..+.+.+.+ +.+.||+.++.++..+.+.+- +..++ +...+..+..+++|.+...|+..|..+...
T Consensus 123 el~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 123 ELLGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 3445566667777776 799999999999999987532 34444 355666677789999999999999988776
No 112
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.032 Score=60.84 Aligned_cols=146 Identities=22% Similarity=0.239 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 21 ~~~l~~ll~~~~-s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
..+++.+-..++ +.|...|-+||+.|.++.. +|+ +++....++.++..|.-..+|+.+|-+.+..+ ..++-+
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-----t~lpl~ 76 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-----TPLPLE 76 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-----CCCcHH
Confidence 456777777764 5689999999999999999 787 56777777777888899999999999999886 579999
Q ss_pred HHHHHHHHHHHHHhhc---chHhHHHHHHHHHHHHHhcccCCC-----CcchHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 001855 100 TQSSLKSMLLQSIQLE---SAKSISKKLCDTVSELASNILPEN-----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~---~~~~vr~~~~~~l~~i~~~~~~~~-----~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~ 171 (1004)
++-.|++-+++-+... -.+.+-..+++.++++.+..|-.. .+-+.+..+...++.++.+....++.+|..+.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999999999862 235678889999999988765432 23455555556565555555555566665555
Q ss_pred hh
Q 001855 172 QY 173 (1004)
Q Consensus 172 ~~ 173 (1004)
.+
T Consensus 157 qe 158 (1082)
T KOG1410|consen 157 QE 158 (1082)
T ss_pred HH
Confidence 44
No 113
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.089 Score=64.87 Aligned_cols=133 Identities=23% Similarity=0.320 Sum_probs=104.5
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccC
Q 001855 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1004)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~ 499 (1004)
+..+.+.+..++|..|.++..++++++...+. .++...+...+++.+.+..++..|..-..+++.+.+..+.-.=..
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 35566778889999999999999999987765 457788888888888875666677777778888877665322246
Q ss_pred chHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001855 500 YLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1004)
++.+-+..++.+.+++.. .|+..++.++..+....+..+..|....+..+...+-+
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls 1011 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLS 1011 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCC
Confidence 677777788888888765 99999999999999988887777888888777777654
No 114
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.012 Score=58.25 Aligned_cols=334 Identities=14% Similarity=0.185 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh-ccc----cHHHHHHHHHHhhcCC
Q 001855 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTP----HLKHLHAVFLNCLTNS 196 (1004)
Q Consensus 122 ~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~----~~~~l~~~l~~~l~~~ 196 (1004)
..+..++.++.+...+...-|+++|.|+..+..++..++..++..++.+.+..+.. ... .-..+++.++.++...
T Consensus 61 tlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred hhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 34667788888877776788999999999999999999999999999999876521 111 2356888888898887
Q ss_pred CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHH-HHHH--HHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHH-H
Q 001855 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPL-MMRT--LTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-D 272 (1004)
Q Consensus 197 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~--l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~ 272 (1004)
+.+|-++|++.+..+..+- ..+..++|. ++.. +......-+.-.|...++++..+.+..+......-. .
T Consensus 141 -ddeVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSG 213 (524)
T KOG4413|consen 141 -DDEVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSG 213 (524)
T ss_pred -cHHHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence 8999999999998877642 111111110 0000 000001113346677778888777766655443222 4
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCccccCCCCCCcccc
Q 001855 273 VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAG 350 (1004)
Q Consensus 273 i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~ 350 (1004)
++..+..-++. ..+.-++..++++...++.... -.+|+ +.+++.+.+.+...+.+|
T Consensus 214 LldlLeaElkG-teDtLVianciElvteLaeteH--------greflaQeglIdlicnIIsGadsdP------------- 271 (524)
T KOG4413|consen 214 LLDLLEAELKG-TEDTLVIANCIELVTELAETEH--------GREFLAQEGLIDLICNIISGADSDP------------- 271 (524)
T ss_pred HHHHHHHHhcC-CcceeehhhHHHHHHHHHHHhh--------hhhhcchhhHHHHHHHHhhCCCCCc-------------
Confidence 55555544422 1345578899999999887421 11122 456777766666544332
Q ss_pred CCcccchHHHHHHHHHHhcCC--------CcchHHH---HHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH--HHHHhHH
Q 001855 351 ESSNYSVGQECLDRLAIALGG--------NTIVPVA---SEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLE 417 (1004)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~--------~~~~~~l---~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~ 417 (1004)
++.++ .+--.+..+|. +.+...+ +.-..+.+...++....+|+.++|.+..+... .+...-+
T Consensus 272 -fekfr----almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp 346 (524)
T KOG4413|consen 272 -FEKFR----ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP 346 (524)
T ss_pred -HHHHH----HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC
Confidence 11111 11111222221 1122222 22223445567888999999999998765432 1212222
Q ss_pred HHHHHHHhhCCCCC-hhHHHHHHHHHHHhhhhhchhH---Hh---------hhhhh--------hHHHHHhhcCCCCChh
Q 001855 418 QVLSMVLNSFRDPH-PRVRWAAINAIGQLSTDLGPDL---QN---------QFHPQ--------VLPALAGAMDDFQNPR 476 (1004)
Q Consensus 418 ~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~---~~---------~~~~~--------ll~~l~~~l~~~~~~~ 476 (1004)
.-...++....|.+ ..-+.++..++..++..+.... .. -+++. =+......++. +.+.
T Consensus 347 paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQ-pfpE 425 (524)
T KOG4413|consen 347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQ-PFPE 425 (524)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcC-CChh
Confidence 23334444444443 3345677778877776543211 00 01111 11122233444 6788
Q ss_pred HHHHHHHHHHHHhh
Q 001855 477 VQAHAASAVLNFSE 490 (1004)
Q Consensus 477 v~~~a~~~l~~l~~ 490 (1004)
++.++...+..+..
T Consensus 426 ihcAalktfTAiaa 439 (524)
T KOG4413|consen 426 IHCAALKTFTAIAA 439 (524)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888877777653
No 115
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.97 E-value=2.4e-05 Score=69.88 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=87.7
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccc
Q 001855 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1004)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l 497 (1004)
+++.+...+.+.++.+|..++++++.++...+... ..+.. .++|.+.+.+.+ +++.++..++++|.+++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 56777788888899999999999999997643333 33344 899999999999 8999999999999999876542111
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001855 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1004)
Q Consensus 498 ~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 531 (1004)
...-..+++.+.+.+++.+..+++.++.++.+++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122347888899999989999999999998875
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.94 E-value=0.00033 Score=66.93 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001855 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1004)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l 469 (1004)
++.+|..++.++|.++...+. .++..++.+..+|+|+++.||..|+.++..+... ++ .+.-..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DM-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cc-eeehhhhhHHHHHHH
Confidence 467899999999999987664 4566678888999999999999999999998753 22 344566667788888
Q ss_pred CCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHH
Q 001855 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1004)
Q Consensus 470 ~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~ 510 (1004)
.| +++.||..|..++..+.....++.+..++++++..+-.
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99 99999999999999999875555555555555554443
No 117
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.94 E-value=0.00029 Score=73.14 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=129.5
Q ss_pred chHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHH-HHHhhhhhch
Q 001855 374 IVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA-IGQLSTDLGP 451 (1004)
Q Consensus 374 ~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~ 451 (1004)
.+..++-.+.+.+.+ .+...|.-|+..|+.+....+..+..+.+-.+.-++..-.|.++.|-..|... +..++.+.|-
T Consensus 326 ~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 326 HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 344555566667776 78899999999999999998887766766667777777788877666555554 4444444432
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001855 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1004)
Q Consensus 452 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 531 (1004)
..+..+.|.++. . +...-..++..+..+++....+.+.+.++++.|.+++..++.+..||..+..|+-.+.
T Consensus 406 ----~~I~~i~~~Ilt---~--D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 406 ----QCIVNISPLILT---A--DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ----hHHHHHhhHHhc---C--cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 234455555554 2 2344566777999999999988899999999999999999999999999999999999
Q ss_pred HHhH-hhhHhhHhhhhHHHHHHH
Q 001855 532 DSSQ-EHFQKYYDAVMPFLKAIL 553 (1004)
Q Consensus 532 ~~~~-~~~~~~~~~i~~~l~~~l 553 (1004)
..+| +.+.||+.++-..-.+++
T Consensus 477 ~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 477 NRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HHHhHHhhhhHhhhccHHHHHHH
Confidence 9999 889999987755544444
No 118
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0058 Score=64.34 Aligned_cols=280 Identities=17% Similarity=0.159 Sum_probs=159.5
Q ss_pred HHHHHHHhcccCCCCc--c---hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChH
Q 001855 126 DTVSELASNILPENGW--P---ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPD 200 (1004)
Q Consensus 126 ~~l~~i~~~~~~~~~~--~---~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 200 (1004)
..++.+++...+..-| + +++-.+.+-..+++...|..++.+|+...+..++....+.+.++..+...|-|+.+.+
T Consensus 236 td~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~ 315 (533)
T KOG2032|consen 236 TDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEE 315 (533)
T ss_pred HHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccH
Confidence 3455555544443344 2 3344444445677789999999999999999888888888888888888888876899
Q ss_pred HHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch----HHHHHhHH-HHHH
Q 001855 201 VKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP----RFLRRQLV-DVVG 275 (1004)
Q Consensus 201 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~-~i~~ 275 (1004)
|...++++|..+.....+. .+..++-.+.-.+.....+.+++.|..++..++.+....+ .+|...+. ...+
T Consensus 316 V~leam~~Lt~v~~~~~~~----~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ 391 (533)
T KOG2032|consen 316 VQLEAMKCLTMVLEKASND----DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP 391 (533)
T ss_pred HHHHHHHHHHHHHHhhhhc----chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc
Confidence 9999999999988865321 1122211222334556667899999999999988876443 33333222 3334
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCccc
Q 001855 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY 355 (1004)
Q Consensus 276 ~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~ 355 (1004)
+++.+ .+..+.+.. |+......+- |...++ ....+++.... ....
T Consensus 392 lllhl---~d~~p~va~-ACr~~~~~c~-----p~l~rk---e~~~~~q~~ld----------------------~~~~- 436 (533)
T KOG2032|consen 392 LLLHL---QDPNPYVAR-ACRSELRTCY-----PNLVRK---ELYHLFQESLD----------------------TDMA- 436 (533)
T ss_pred ceeee---CCCChHHHH-HHHHHHHhcC-----chhHHH---HHHHHHhhhhH----------------------HhHH-
Confidence 44332 233444433 3443333332 211111 11112221110 0000
Q ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHH----HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHh--HHHHHHHHHhhCCC
Q 001855 356 SVGQECLDRLAIALGGNTIVPVASEQLP----AYLAAPEWQKHHAALIALAQIAEGCAKVMVKN--LEQVLSMVLNSFRD 429 (1004)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~----~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~d 429 (1004)
.........+..+. .+.+.++-++. -.+++....+|.++...-+.+..+.....-++ ...+...+-....|
T Consensus 437 -~~q~Fyn~~c~~L~--~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~d 513 (533)
T KOG2032|consen 437 -RFQAFYNQWCIQLN--HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRD 513 (533)
T ss_pred -HHHHHHHHHHHHHh--hhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccC
Confidence 01111222121121 22222222222 23334444888888888787777665533333 34455667777789
Q ss_pred CChhHHHHHHHHHHHhhh
Q 001855 430 PHPRVRWAAINAIGQLST 447 (1004)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~ 447 (1004)
+.|.++..+..+++.+..
T Consensus 514 p~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 514 PRPEVTDSARKALDLLSV 531 (533)
T ss_pred CCchhHHHHHHHhhhHhh
Confidence 999999999999887653
No 119
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00056 Score=67.30 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=122.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001855 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1004)
.+......+.+.+|.....++..+..+++..++.+.+.+..++-.+++.+++....|-.+||.+++.+...+...+ ...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4444445678899999999999999999999998889999999999999999999999999999999999998877 456
Q ss_pred hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
++.++..|+..-.. .+.-||..|-.+|..++.+..+. .+++.|...+++.++.+|..+..|+.......|
T Consensus 168 ld~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 66666666655555 57889999999999999887653 355666777888888898888888777766655
No 120
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.80 E-value=0.0019 Score=58.07 Aligned_cols=154 Identities=29% Similarity=0.395 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhhcch-HhHHHHHHHHHHHHHhcc--cCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhh-hhHhhhc
Q 001855 103 SLKSMLLQSIQLESA-KSISKKLCDTVSELASNI--LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS-QYIGDTL 178 (1004)
Q Consensus 103 ~i~~~ll~~l~~~~~-~~vr~~~~~~l~~i~~~~--~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~-~~~~~~~ 178 (1004)
.||..|+..|..+.. .+.-+.++++++.++... .+.+.|++|.+.+.... .+++ ..|+.++..+. ...++-+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 477788888876422 334455666666665543 46689999998888754 2222 45899999888 5555667
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHH--HHHH-HHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 001855 179 TPHLKHLHAVFLNCLTNSNNPDVKI--AALN-AVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE-ATAQEALEL 254 (1004)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~--~a~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~a~~~ 254 (1004)
.+++..+++.+.+.|.++.+.++.. .|+. ++...+..++.....+.+.++++.+++.+.+.++.+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 7889999999999999884445543 3332 22333444444445688889999999999998887766 677777777
Q ss_pred HHHHHc
Q 001855 255 LIELAG 260 (1004)
Q Consensus 255 L~~l~~ 260 (1004)
+-.++.
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 776654
No 121
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0044 Score=70.63 Aligned_cols=297 Identities=15% Similarity=0.139 Sum_probs=164.5
Q ss_pred HHHHHHHHHhhhhHhhhcccc-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHH
Q 001855 161 ESAFLIFAQLSQYIGDTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (1004)
Q Consensus 161 ~~al~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 239 (1004)
...+..++.++...++.|.+. +..++|.+.++ .++ +..++..|..|+..++...........+.....++++.+...
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~-a~~-s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~ 643 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKL-ASP-SEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALR 643 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHh-cCc-hHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHH
Confidence 346777888888888877653 45556666654 454 889999999999999987654444556667777787777665
Q ss_pred HhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh-------------
Q 001855 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE------------- 306 (1004)
Q Consensus 240 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~------------- 306 (1004)
++... .-..+-.++.-+......-..++++++++.++..++.-+... ...-+..+.++.+..+
T Consensus 644 L~~~~--~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~--~~~~~~ll~s~ik~~~~~~~~~~il~~~~ 719 (1014)
T KOG4524|consen 644 LNTSG--MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYS--CLQFFQLLHSIIKEMKKKYINDEILGHIA 719 (1014)
T ss_pred hccCC--CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 54111 111223334434443333345566666666666554333222 1111112222211100
Q ss_pred ------------ccchhhhcch----hhHHHHHHHHHHhhcC---CCCCccccCCCCCCccccCCcccchHHHHHHHHHH
Q 001855 307 ------------RAPGMMRKLP----QFINRLFAILMSMLLD---IEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1004)
Q Consensus 307 ------------~~~~~~~~~~----~~~~~l~~~l~~~l~~---~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~ 367 (1004)
..|....... .+...+.+........ .+.+++-...+.+.+.+++.+.+.- .+
T Consensus 720 d~~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d--------~e 791 (1014)
T KOG4524|consen 720 DQHISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTD--------TE 791 (1014)
T ss_pred HHHHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCC--------CC
Confidence 0111111111 1222223333222211 0111100000001111112222110 00
Q ss_pred hcCC--CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc---HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 001855 368 ALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC---AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAI 442 (1004)
Q Consensus 368 ~~~~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~---~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 442 (1004)
...+ -.++..++.....++++++-..|-.++.++..-...+ .+.+-+.+....|.++..+.+++|.+...|+.++
T Consensus 792 p~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i 871 (1014)
T KOG4524|consen 792 PILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCI 871 (1014)
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHH
Confidence 0000 0233345555566788999999999998887654433 2345566777889999999999999999999999
Q ss_pred HHhhhhhchhHHhhhhhhhHHHHHhhcCC
Q 001855 443 GQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1004)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 471 (1004)
..++...++.+.+.+...++|.+-..+.+
T Consensus 872 ~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 872 EQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888788999999998876655
No 122
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.77 E-value=0.034 Score=70.66 Aligned_cols=311 Identities=14% Similarity=0.158 Sum_probs=186.5
Q ss_pred Ccch----HHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh--hcc--ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001855 140 GWPE----LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1004)
Q Consensus 140 ~~~~----ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~--~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1004)
.|+. +-+++.....+++..++..|+..|+.++..+-+ ++. .+-..++..|...+....+.++|...++|+.+
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~q 1209 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQ 1209 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 5555 555555544455667788888888888776432 221 12356677777666655588999999999999
Q ss_pred HHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHH----HhHHHHHHHHHHhhcCCCcc
Q 001855 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR----RQLVDVVGSMLQIAEAESLE 287 (1004)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~~~i~~~l~~~~~~~~~~ 287 (1004)
++... ...+..=++.++..+.....++.+.+...+++.+..+...+-..+. ..+..++..+.....+. .+
T Consensus 1210 mI~s~-----~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~ 1283 (1780)
T PLN03076 1210 MVLSR-----VNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FN 1283 (1780)
T ss_pred HHHHH-----HhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-Cc
Confidence 98864 2334444566777777777777888999999999988765433222 45567777776666443 34
Q ss_pred hHHHHHHHHHHHHHHHhhhccchh---------------------------hhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001855 288 EGTRHLAIEFVITLAEARERAPGM---------------------------MRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1004)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~---------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1004)
.++...|++++..++..-...+.. ......+..-++|.+...-.-.. +
T Consensus 1284 ~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-D---- 1358 (1780)
T PLN03076 1284 KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF-D---- 1358 (1780)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc-C----
Confidence 667778888776553321000000 00001112334444433211111 1
Q ss_pred CCCCCCccccCCcccchHHHHHHHHHHhcCCC---cc----h-HHHHHHHHHhhc-----------------C------C
Q 001855 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGN---TI----V-PVASEQLPAYLA-----------------A------P 389 (1004)
Q Consensus 341 ~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~---~~----~-~~l~~~l~~~l~-----------------~------~ 389 (1004)
+....+..|.+.|-.+....|.. .. + ..+.|.+...-. + .
T Consensus 1359 ---------~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 1429 (1780)
T PLN03076 1359 ---------PRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQD 1429 (1780)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhh
Confidence 02235566666665544444421 11 1 134444432110 0 1
Q ss_pred ChhHHHHHHHHHHHHHhhcHH---HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001855 390 EWQKHHAALIALAQIAEGCAK---VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1004)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~ 466 (1004)
.|. .+++..++..+++-... .+...++.++..+..++..++..+-..+..|+.+++...+..+....+..++..+.
T Consensus 1430 ~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076 1430 AWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 243 56666666666654443 44567788888888888889999999999999999988877776667777777766
Q ss_pred hhcCC
Q 001855 467 GAMDD 471 (1004)
Q Consensus 467 ~~l~~ 471 (1004)
+.+..
T Consensus 1509 ~lf~~ 1513 (1780)
T PLN03076 1509 EAANA 1513 (1780)
T ss_pred HHHHH
Confidence 66554
No 123
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.072 Score=61.05 Aligned_cols=164 Identities=12% Similarity=0.101 Sum_probs=113.4
Q ss_pred cCCChHHHHHHHH-HHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHH
Q 001855 32 MSTSNEQRSEAEL-LFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSML 108 (1004)
Q Consensus 32 ~s~~~~~r~~A~~-~L~~~~~~~p~~~~~~L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~l 108 (1004)
.|.+...|..|-+ -+.++...++ +-..+.+++.. +.|.++|++.-.+|.+.-+. | |+..-.-.+.+
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~----P~~~lLavNti 97 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----K----PELALLAVNTI 97 (757)
T ss_pred cccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----C----HHHHHHHHHHH
Confidence 3334444444444 5566666333 33445555543 78999999999999887554 3 33333444566
Q ss_pred HHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHH
Q 001855 109 LQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAV 188 (1004)
Q Consensus 109 l~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~ 188 (1004)
..-+.+ +++.+|-.+.+.++.+-. + .-|..+++.+.++++++++.+|..|..++..+.+...+.... ..+..+
T Consensus 98 ~kDl~d-~N~~iR~~AlR~ls~l~~---~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~--~g~~~~ 170 (757)
T COG5096 98 QKDLQD-PNEEIRGFALRTLSLLRV---K-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE--LGLIDI 170 (757)
T ss_pred HhhccC-CCHHHHHHHHHHHHhcCh---H-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc--ccHHHH
Confidence 667776 899999998888886633 2 588999999999999999999999999999888765543221 113344
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHH
Q 001855 189 FLNCLTNSNNPDVKIAALNAVINFIQ 214 (1004)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~~~~ 214 (1004)
+...+.|. ++.|...|+.++..+-.
T Consensus 171 l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 171 LKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHhch
Confidence 45556676 99999999888876544
No 124
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.75 E-value=0.003 Score=60.33 Aligned_cols=134 Identities=14% Similarity=0.301 Sum_probs=96.5
Q ss_pred hHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCC
Q 001855 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (1004)
Q Consensus 117 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 196 (1004)
++.+|..+..+++-++.. +| +....++|.+...+.++++.+|..|+.++..+... ++...-..++..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r-~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-YP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-Cc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCC
Confidence 367899999999988874 45 45566789999999999999999999999988764 33333456666677788998
Q ss_pred CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHHHc
Q 001855 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN-----NGNEATAQEALELLIELAG 260 (1004)
Q Consensus 197 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~~a~~~L~~l~~ 260 (1004)
+++||..|..++..+.... .++.+...+|.++..+....+ ..+.+.|...+..+...+.
T Consensus 76 -~~~Ir~~A~~~~~e~~~~~----~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 76 -NPEIRSLARSFFSELLKKR----NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred -CHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 9999999999999988864 345566667766666554322 1234445555555554443
No 125
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.72 E-value=0.11 Score=57.26 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=106.7
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh-hhhhhHHHHH
Q 001855 389 PEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALA 466 (1004)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~l~ 466 (1004)
.+...+.||+.++..++......-. ..-..+...+++.+.|+...|..+++-++..++-.+++.- .. .-...+..+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l~ 467 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDILE 467 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHHH
Confidence 5677888999999888765543111 1123466777788899999999999999999988776543 23 3357788888
Q ss_pred hhcCCCCChhHHHHHHHHHHHHhhcCCccccc-CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001855 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1004)
Q Consensus 467 ~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~-~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 534 (1004)
+.+.+ +++.+|..+.++|..+.-++..+... ++-.--...+..+.+++++.|+++++..+.++..-.
T Consensus 468 s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 468 SMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 88888 88999999999999998776543322 333333456667789999999999999998886543
No 126
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.15 Score=57.32 Aligned_cols=116 Identities=12% Similarity=0.144 Sum_probs=79.5
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccc---cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001855 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1004)
Q Consensus 142 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1004)
++.+..+.+.+...+-.+|..++..+..+....+.++.. ..|.-+..++..|.|. ...+|..++-.|..++...+.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCch
Confidence 567778888887788899999999999999887765432 3455666777788887 889999999999998876432
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHHHccc
Q 001855 219 SADRDRFQDLLPLMMRTLTESLNNG----NEATAQEALELLIELAGTE 262 (1004)
Q Consensus 219 ~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~~~~a~~~L~~l~~~~ 262 (1004)
....-.|.. +...|+..+..+ ..-+...|+.++..+....
T Consensus 200 IQKlVAFEN----aFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 200 IQKLVAFEN----AFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHHH----HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 111222333 333444444321 2236677888888887655
No 127
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.70 E-value=0.00026 Score=58.84 Aligned_cols=86 Identities=28% Similarity=0.401 Sum_probs=66.8
Q ss_pred HHHHHhh-cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001855 380 EQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1004)
Q Consensus 380 ~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1004)
+.+.+.+ ++++|.+|..++.+++.+. -+..++.+...++|+++.||..|+++|+.+..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 4455566 7899999999999999432 23567888888899999999999999998741
Q ss_pred hhhHHHHHhhcCCCCChhHHHHHHHHHH
Q 001855 459 PQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1004)
Q Consensus 459 ~~ll~~l~~~l~~~~~~~v~~~a~~~l~ 486 (1004)
+..++.+.+.+.+.++..||..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3467778888777456678999988874
No 128
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.69 E-value=0.017 Score=58.52 Aligned_cols=248 Identities=14% Similarity=0.190 Sum_probs=158.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhhhHhhh-cc-ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhH
Q 001855 147 FMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1004)
Q Consensus 147 ~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 224 (1004)
.|-..++++++..|..|+.+|..+.+..+.. +. ..+.-++..+...+.|. ..+. .+++.+..++..- . ....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~-~~l~gl~~L~~~~-~-~~~~- 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQ-PALKGLLALVKMK-N-FSPE- 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHH-HHHHHHHHHHhCc-C-CChh-
Confidence 3456778899999999999999999988754 32 24666777888777653 3344 4488888887532 1 1122
Q ss_pred HHhhHHHHHHHHHHHH--hcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001855 225 FQDLLPLMMRTLTESL--NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1004)
Q Consensus 225 ~~~~~~~~l~~l~~~l--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 302 (1004)
....+++.+++.. +......|..+++++..+++.+...+...-+.++..+++.++. +-|+.--..+++++..+.
T Consensus 77 ---~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g-EkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 77 ---SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG-EKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred ---hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence 2334555544422 2234568999999999999998887776667788777776643 346666677888888887
Q ss_pred HhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccch-HHHHHHHHHHhcC-CCcchHHHHH
Q 001855 303 EARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALG-GNTIVPVASE 380 (1004)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~-a~~~l~~l~~~~~-~~~~~~~l~~ 380 (1004)
.. .+ ..++.+.++..+.-+.--.=..+ . .| ++.. +.++-..|-..+. ...+.+..+|
T Consensus 153 ~~---~~-----~~~~~e~lFd~~~cYFPI~F~pp-----~-~d-------p~~IT~edLk~~L~~cl~s~~~fa~~~~p 211 (262)
T PF14500_consen 153 QE---FD-----ISEFAEDLFDVFSCYFPITFRPP-----P-ND-------PYGITREDLKRALRNCLSSTPLFAPFAFP 211 (262)
T ss_pred Hh---cc-----cchhHHHHHHHhhheeeeeeeCC-----C-CC-------CCCCCHHHHHHHHHHHhcCcHhhHHHHHH
Confidence 73 11 35667777777655432110000 0 00 1111 1222222222222 2456788999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHh
Q 001855 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLN 425 (1004)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~ 425 (1004)
.+.+-+.++...+|..++..+...+...+. .+.+|...+...+..
T Consensus 212 ~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 212 LLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999989999999998887775543 566777777766543
No 129
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.67 E-value=0.028 Score=64.75 Aligned_cols=302 Identities=18% Similarity=0.171 Sum_probs=163.4
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch
Q 001855 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1004)
Q Consensus 142 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 221 (1004)
..+++.|.+++.+++...+..++++|..++..-.-.-.-.-..++|.+...+.++ ..+..++..|+++...-+ .
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~---~ 403 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDE---A 403 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHh---h
Confidence 3578889999998888889999999988876432110011233556666666665 455667778877765321 1
Q ss_pred HhHH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch--HHHH--HhHHHHHHHHHHhhcCCCcchHHHHHHH
Q 001855 222 RDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLR--RQLVDVVGSMLQIAEAESLEEGTRHLAI 295 (1004)
Q Consensus 222 ~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~--~~~~~i~~~l~~~~~~~~~~~~vr~~a~ 295 (1004)
...| .+.+|.+++.+.. .+++.+...++.++..++.... ..+- ..++.++...++ .. + ...+
T Consensus 404 r~~f~~TdcIp~L~~~Ll~---~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~---~~--D----~lLl 471 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLE---NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK---TR--D----PLLL 471 (708)
T ss_pred HHHHhhcchHHHHHHHHHh---CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh---cc--c----HHHH
Confidence 2222 2556777776654 3344555555555555543221 1111 112233332221 11 1 1234
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCC---
Q 001855 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN--- 372 (1004)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~--- 372 (1004)
.++..++.+. +.....+.+|+..++.. +...+ + .....++++.|+..--++
T Consensus 472 KlIRNiS~h~---~~~k~~f~~~i~~L~~~----v~~~~-~------------------ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 472 KLIRNISQHD---GPLKELFVDFIGDLAKI----VSSGD-S------------------EEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHHHhcC---chHHHHHHHHHHHHHHH----hhcCC-c------------------HHHHHHHHHHHHhcccCCcCH
Confidence 6677777652 11112233344443333 22211 1 135677888887643222
Q ss_pred -cch--HHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCCCC--ChhHHHHHHHHHH
Q 001855 373 -TIV--PVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDP--HPRVRWAAINAIG 443 (1004)
Q Consensus 373 -~~~--~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~--~~~vr~~a~~~l~ 443 (1004)
.++ ..++|++...+... +......++..+|.++... .....+ ..+++.+...|+.. +....-..+.++.
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 122 14677777777542 3456667778888877532 222333 24555555555322 3334444555666
Q ss_pred Hhhhhhc--hhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC
Q 001855 444 QLSTDLG--PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1004)
Q Consensus 444 ~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 492 (1004)
++..+-. ..+. .-.++...++..+.| +|+.+|..|-.+|.-+.+.-
T Consensus 604 ~ll~h~~tr~~ll--~~~~~~~ylidL~~d-~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 604 QLLFHEETREVLL--KETEIPAYLIDLMHD-KNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHcChHHHHHHH--hccchHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC
Confidence 6665421 1111 124677889999999 99999988888887776543
No 130
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.67 E-value=0.00071 Score=62.46 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=83.2
Q ss_pred hhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH---HHH
Q 001855 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADS 533 (1004)
Q Consensus 457 ~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l---~~~ 533 (1004)
-++.++|.+++.+.+ ....-+--|...+..+++..+.+.+.|.++.++..+...+++.++.+...++.++..+ ...
T Consensus 35 dy~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 367889999999998 5556778888899999988444668899999999999999999999999999999999 667
Q ss_pred hHhhhHhhHhhhhHHHHHHH
Q 001855 534 SQEHFQKYYDAVMPFLKAIL 553 (1004)
Q Consensus 534 ~~~~~~~~~~~i~~~l~~~l 553 (1004)
+|+.+.||+.+++|.+.-..
T Consensus 114 vG~aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFK 133 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999887543
No 131
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.67 E-value=0.034 Score=59.89 Aligned_cols=355 Identities=12% Similarity=0.082 Sum_probs=179.6
Q ss_pred CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH--HHHHHHHHHHHHHhhcchHhHHHHHHHHHHH
Q 001855 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH--TQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130 (1004)
Q Consensus 53 ~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~--~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~ 130 (1004)
+.+.+...++.++....++.+.+....++..++...+ ..+..+-+. .....-..++..|.. .+..+...++.+++.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~ 127 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAK 127 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 4355778888888877788999999998888887641 111111000 001122345666666 688999999999999
Q ss_pred HHhcccCCCCcch----HHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhHh--hhccccHHHHHHHHHHhhcCC-CChHHH
Q 001855 131 LASNILPENGWPE----LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIG--DTLTPHLKHLHAVFLNCLTNS-NNPDVK 202 (1004)
Q Consensus 131 i~~~~~~~~~~~~----ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~-~~~~vr 202 (1004)
++..... ..... +++.+...++++ +...+..++.++..+...-. ..|.. ...++.+...++.. .+..+.
T Consensus 128 l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 9875322 22222 444555555544 35666778888887765421 11110 11234444444432 145666
Q ss_pred HHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch------HHHHHhHH-HHHH
Q 001855 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP------RFLRRQLV-DVVG 275 (1004)
Q Consensus 203 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~-~i~~ 275 (1004)
..++-|+--+.-.-+ ......-.+++|.+++.+... ..+.+.+-++.+|..++.... ......+. .+.+
T Consensus 205 Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~ 280 (429)
T cd00256 205 YQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK 280 (429)
T ss_pred HHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence 666666655433211 001111134566666665543 356777788888888876431 11111111 1111
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCccc
Q 001855 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY 355 (1004)
Q Consensus 276 ~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~ 355 (1004)
.+-.+...+-.|+++.. .++.+....+.. ......+..|...+..-.+ .| ++.
T Consensus 281 ~l~~L~~rk~~DedL~e-dl~~L~e~L~~~---~k~ltsfD~Y~~El~sg~L----------~W-------------Sp~ 333 (429)
T cd00256 281 TLQSLEQRKYDDEDLTD-DLKFLTEELKNS---VQDLSSFDEYKSELRSGRL----------HW-------------SPV 333 (429)
T ss_pred HHHHHhcCCCCcHHHHH-HHHHHHHHHHHH---HHHcCCHHHHHHHHhcCCc----------cC-------------CCC
Confidence 11111122223444432 344444433320 0000111222222221111 12 121
Q ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhhCCCCCh
Q 001855 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDPHP 432 (1004)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~~~ 432 (1004)
.........=+..+..+. -.++..+.+.+ .+.++..-..|+.=+|.++...|. .+...+. .=..++..+.++++
T Consensus 334 H~se~FW~EN~~kf~~~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~ 410 (429)
T cd00256 334 HKSEKFWRENADRLNEKN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDP 410 (429)
T ss_pred CCCchHHHHHHHHHHhcc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCH
Confidence 111122222222221111 12344444455 345667777888889999887653 2211111 23567788899999
Q ss_pred hHHHHHHHHHHHhh
Q 001855 433 RVRWAAINAIGQLS 446 (1004)
Q Consensus 433 ~vr~~a~~~l~~l~ 446 (1004)
.||..|+.|+..+.
T Consensus 411 ~Vr~eAL~avQklm 424 (429)
T cd00256 411 NVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998874
No 132
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.66 E-value=0.0019 Score=74.78 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=137.4
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001855 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1004)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1004)
...+...+.-...|.|..+-.-++.+|..++..++..+.+|...++|.++..+.+..+.+|+++..++..++..
T Consensus 293 ~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------ 366 (815)
T KOG1820|consen 293 TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------ 366 (815)
T ss_pred chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------
Confidence 33344445555678899999999999999999999888899999999999999999999999999999998873
Q ss_pred hhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCc-ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001855 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1004)
Q Consensus 455 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 533 (1004)
..+..+.+.++..+++ .++.++..+...+...+...++ .....-...+++.++...++.+..||.+++.+++.+...
T Consensus 367 -~~l~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 367 -TPLSKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred -ccHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 3467788999999999 9999999999999999988773 233455788899999999999999999999999999999
Q ss_pred hHhh-hHhhHhhhh
Q 001855 534 SQEH-FQKYYDAVM 546 (1004)
Q Consensus 534 ~~~~-~~~~~~~i~ 546 (1004)
+|+. +..|+..+-
T Consensus 445 ~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 445 HGEEVFKKLLKDLD 458 (815)
T ss_pred hhHHHHHHHHHhhc
Confidence 9864 344544443
No 133
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.63 E-value=0.0017 Score=60.85 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=113.1
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCC
Q 001855 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1004)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 493 (1004)
..+......+.+.++++++.-|..++..+...++..+.+....+....+..+++.++....+.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566677788889999999999999999999998866654677788888888888875567788999999999987543
Q ss_pred ------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH
Q 001855 494 ------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1004)
Q Consensus 494 ------~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (1004)
.+...|.++.+++.+++++++ ....+.++.++..+....+..|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 245679999999999999886 5567789999999999988889999888877776654
No 134
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.61 E-value=0.0017 Score=60.83 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=112.1
Q ss_pred CcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhH-hhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001855 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1004)
Q Consensus 140 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1004)
.+..+...+.++++++++..|-.|+..++.+++.. .+-+..+...++..+++.++.+....++..++.++..++....+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566777888888999999999999999999997 45565778899999999999886788999999999999987643
Q ss_pred c--chHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHh
Q 001855 219 S--ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (1004)
Q Consensus 219 ~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~ 280 (1004)
. ...+.....+|.+++.+...+++ ......++.+|..++..+|..+.|+..++-..+...
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 1 13344456788888888877754 567789999999999999999999988877766554
No 135
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.21 Score=55.76 Aligned_cols=499 Identities=14% Similarity=0.170 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC--ChhHHHHHHHHH-HHhhhhHhh--
Q 001855 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIF-AQLSQYIGD-- 176 (1004)
Q Consensus 102 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l-~~l~~~~~~-- 176 (1004)
+.+++.+.+.+.. +..+|+.+-.-+-.+ ..-|.++-.+.+.+.+. +.++|..|..-+ ..+......
T Consensus 3 ~ellqcf~qTlda--da~~rt~AE~~Lk~l-------eKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~ 73 (970)
T COG5656 3 EELLQCFLQTLDA--DAGKRTIAEAMLKDL-------EKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKR 73 (970)
T ss_pred HHHHHHHHHHhcc--CcchhhHHHHHHHHh-------hcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcc
Confidence 4566667777754 677777665554432 35577788888877654 456666654444 344433221
Q ss_pred --h----ccccH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHH
Q 001855 177 --T----LTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ 249 (1004)
Q Consensus 177 --~----~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 249 (1004)
. ..+.. ..++.-++..+.. ++.+-..+..+....+..-. .+. ++++ +.+.....+.+.+.....
T Consensus 74 d~~i~~Dek~e~K~~lienil~v~l~--sp~~tr~~l~ail~~I~seD---~ps---~~wg-l~p~~~nll~s~ea~~vy 144 (970)
T COG5656 74 DDGIKADEKSEAKKYLIENILDVFLY--SPEVTRTALNAILVNIFSED---KPS---DLWG-LFPKAANLLRSSEANHVY 144 (970)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHhcccc---Cch---hhcc-cchHHHHhhcccchhHHH
Confidence 1 11111 2233333333232 33444455555555554321 121 2233 344444455567777888
Q ss_pred HHHHHHHHHHccch-------HHHHHhHHHHHHHHHHhhcCCCc-----chHHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001855 250 EALELLIELAGTEP-------RFLRRQLVDVVGSMLQIAEAESL-----EEGTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1004)
Q Consensus 250 ~a~~~L~~l~~~~~-------~~~~~~~~~i~~~l~~~~~~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1004)
.++-|+.++...+. ..+.+.+...++.+.+...+-.. ..++....+..+..+|-+ ..|.... -..
T Consensus 145 ~gLlcl~elfkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~ls-a~e 221 (970)
T COG5656 145 TGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDFLS-AIE 221 (970)
T ss_pred HHHHHHHHHHHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHHHc-cch
Confidence 88999988887552 22344445566666655432211 222333344444444443 1232211 112
Q ss_pred hHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCccc----chHHHHHHHHHHhcCCC--------------cchHHH-
Q 001855 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY----SVGQECLDRLAIALGGN--------------TIVPVA- 378 (1004)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~----~~a~~~l~~l~~~~~~~--------------~~~~~l- 378 (1004)
.+..++...+..+..+-.......+. +....+.| +=|.-.+.++....++. .++|.+
T Consensus 222 ~f~sw~ql~l~i~qkplp~evlsldp----evRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il 297 (970)
T COG5656 222 TFSSWFQLSLRILQKPLPNEVLSLDP----EVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMIL 297 (970)
T ss_pred hhHHHHHHHHHHHcCCCCHHHhccCh----hhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554432111111100 00011111 11222333333222211 112222
Q ss_pred ---HHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH------HHHHhHHHHHH-HHHhhCC-----------CCChhHHH-
Q 001855 379 ---SEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMVKNLEQVLS-MVLNSFR-----------DPHPRVRW- 436 (1004)
Q Consensus 379 ---~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~~~l~~i~~-~l~~~l~-----------d~~~~vr~- 436 (1004)
++.+.++-+.+=|- -...+..++.+.+.|.. .+.+|+.-++. .+++++. |+...+|+
T Consensus 298 ~tffkqie~wgqgqLWl-sd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry 376 (970)
T COG5656 298 ATFFKQIEEWGQGQLWL-SDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRY 376 (970)
T ss_pred HHHHHHHHHhhcCCeec-chHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHh
Confidence 22222222333342 34557777887776643 34567766553 3334332 22222221
Q ss_pred ------------HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCC-------CCChhHHHHHHHHHHHHhhcCC-ccc
Q 001855 437 ------------AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD-------FQNPRVQAHAASAVLNFSENCT-PEI 496 (1004)
Q Consensus 437 ------------~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~-------~~~~~v~~~a~~~l~~l~~~~~-~~~ 496 (1004)
+|+.++-.....-+ +..+..+++-+...+.. ..+++-...|.+.++++..-.. .+.
T Consensus 377 ~df~d~g~spdlaal~fl~~~~sKrk----e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp 452 (970)
T COG5656 377 YDFFDNGLSPDLAALFFLIISKSKRK----EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSP 452 (970)
T ss_pred cchhcCCCChhHHHHHHHHHHhcccc----hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCch
Confidence 22333322222111 23477778777777631 1244556777777777766221 122
Q ss_pred ccCchHH-HHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHH
Q 001855 497 LTPYLDG-IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1004)
Q Consensus 497 l~~~~~~-i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l 575 (1004)
++..++. +++.++..++++..-.+..++..++.+..-+++. ..+........+.+++ +..+++..|..++..+
T Consensus 453 ~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~n----n~lpv~ieAalAlq~f 526 (970)
T COG5656 453 AANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKN----NHLPVMIEAALALQFF 526 (970)
T ss_pred HHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhc----CCcchhhhHHHHHHHH
Confidence 3333332 4566677778887888999999988884443321 2445555666666654 4567777777777777
Q ss_pred Hhhh-ChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHH
Q 001855 576 GMAV-GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1004)
Q Consensus 576 ~~~~-~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~ 642 (1004)
...- -.+.+..|++.+|+-++.+.+ .++ .+.+..++..++..+.+++.||-+.++..+.+.
T Consensus 527 i~~~q~h~k~sahVp~tmekLLsLSn-~fe-----iD~LS~vMe~fVe~fseELspfa~eLa~~Lv~q 588 (970)
T COG5656 527 IFNEQSHEKFSAHVPETMEKLLSLSN-TFE-----IDPLSMVMESFVEYFSEELSPFAPELAGSLVRQ 588 (970)
T ss_pred HhchhhhHHHHhhhhHHHHHHHHhcc-ccc-----chHHHHHHHHHHHHhHHhhchhHHHHHHHHHHH
Confidence 6443 235789999999999998766 233 223445677788888899999998888777663
No 136
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.1 Score=51.94 Aligned_cols=347 Identities=17% Similarity=0.179 Sum_probs=180.9
Q ss_pred hhHHHH---HHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH-HHH
Q 001855 157 VKLQES---AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLM 232 (1004)
Q Consensus 157 ~~~r~~---al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 232 (1004)
.+.|+. ...+|..+.+.... ....++++|.+...|..+ +..|+..+++.++.+++..... ....+...+ ..+
T Consensus 54 enhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtn-aVseillvvNaei 129 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTN-AVSEILLVVNAEI 129 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchh-hHHHHHHHhhhhH
Confidence 455555 44555555443222 125678889999999987 8999999999999988865211 222222211 256
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHH-HhhcCCCcchHHHHHHHHHHHHHHHhhhccch
Q 001855 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSML-QIAEAESLEEGTRHLAIEFVITLAEARERAPG 310 (1004)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~i~~~l~-~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 310 (1004)
++.+..++...+.++...+.+.+..++. ++..+...++ .+.+.+- ..+..+ -++-+|...++++..+.+. .|.
T Consensus 130 lklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieifSi---Spe 204 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSI---SPE 204 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhc---CHH
Confidence 6777778878899999999999998864 2222221111 0000000 000000 1233466666666666552 221
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchH--HHHHHHHHhhc-
Q 001855 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP--VASEQLPAYLA- 387 (1004)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~- 387 (1004)
.... -.-..++..+..-|...++ .-......+....|+..-.+.++++ .++..+...+.
T Consensus 205 sane--ckkSGLldlLeaElkGteD----------------tLVianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 205 SANE--CKKSGLLDLLEAELKGTED----------------TLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HHhH--hhhhhHHHHHHHHhcCCcc----------------eeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 1100 0113355555544443321 1112223444555554332233333 24555555554
Q ss_pred -CCChhHHHHHHHHHHHHHhh------cHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-hHHhhhhh
Q 001855 388 -APEWQKHHAALIALAQIAEG------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHP 459 (1004)
Q Consensus 388 -~~~~~~r~aal~~l~~l~~~------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ 459 (1004)
+.++-.+.-++..++.+... ..+.+-+.+...+...+......+|....+|..++|.+...... +...+.-+
T Consensus 267 adsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp 346 (524)
T KOG4413|consen 267 ADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP 346 (524)
T ss_pred CCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC
Confidence 35566666677777766543 22233333444555556666777888999999999998876532 22122223
Q ss_pred hhHHHHHhhcCCCCChh-HHHHHHHHHHHHhhcCC--cccccC--c--------hH--------HHHHHHHHHhhcCChh
Q 001855 460 QVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCT--PEILTP--Y--------LD--------GIVSKLLVLLQNGKQM 518 (1004)
Q Consensus 460 ~ll~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~--~~~l~~--~--------~~--------~i~~~l~~~l~~~~~~ 518 (1004)
.-...++....+ .+.+ -+..++.+|..+..... ++.+.. - ++ +-+...+..++.+.++
T Consensus 347 paaehllarafd-qnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpE 425 (524)
T KOG4413|consen 347 PAAEHLLARAFD-QNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPE 425 (524)
T ss_pred hHHHHHHHHHhc-ccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChh
Confidence 334444444434 2222 34566777777764321 111111 0 00 0112333445566777
Q ss_pred HHHHHHHHHHHHH
Q 001855 519 VQEGALTALASVA 531 (1004)
Q Consensus 519 vr~~a~~~l~~l~ 531 (1004)
++..++..+..++
T Consensus 426 ihcAalktfTAia 438 (524)
T KOG4413|consen 426 IHCAALKTFTAIA 438 (524)
T ss_pred hHHHHHHHHHHHH
Confidence 7777777776665
No 137
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.54 E-value=0.00045 Score=57.34 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=69.0
Q ss_pred HHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHH
Q 001855 883 SSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV 962 (1004)
Q Consensus 883 l~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~ 962 (1004)
+|.++..+..++++.+|..++.+++.+ + -+..+|.+.+.++|+++.||..|+++||.+- -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----G------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----T------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----C------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 356667675688999999999999832 2 1356888888889999999999999999772 2
Q ss_pred HHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHH
Q 001855 963 GEALSRLNVVIRHPNALQPENLMAYDNAVSALG 995 (1004)
Q Consensus 963 ~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~ 995 (1004)
++.++.|...+.++ .+..+|..|+.+||
T Consensus 61 ~~~~~~L~~~l~~~-----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDD-----DDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC------SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----CcHHHHHHHHhhcC
Confidence 66778888888764 25678999999987
No 138
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.53 E-value=0.057 Score=56.45 Aligned_cols=213 Identities=17% Similarity=0.118 Sum_probs=137.6
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCH
Q 001855 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDE 805 (1004)
Q Consensus 726 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 805 (1004)
....|..++..+..++..- ..++++......++..+...++.... +-...++.++.-+.-.+|..
T Consensus 56 ~~~~Re~aL~~l~~~l~~~-----------~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g--- 120 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSR-----------YLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAG--- 120 (309)
T ss_pred CHHHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCC---
Confidence 5788999988887777532 23566666677788888888876543 23333444444444444532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccch------hhH
Q 001855 806 GQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL------PFF 879 (1004)
Q Consensus 806 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~------~~~ 879 (1004)
.....+++.+.+.|...+... ......|..++.+++.++-..+.... ..+
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~------------------------s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~l 176 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDS------------------------SASPKARAACLEALAICTFVGGSDEEETEELMESL 176 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCC------------------------ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Confidence 123346666666666654310 01234566788888888887765432 223
Q ss_pred HHHHHhHhhhhc-------CCCCHHHHHHHHHHHHHHHHHhhh-hHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 001855 880 DELSSYLTPMWG-------KDKTAEERRIAICIFDDVAEQCRE-AALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1004)
Q Consensus 880 ~~ll~~l~~~l~-------~~~~~~~r~~al~~l~~l~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~ 951 (1004)
..++-....... ...++.....|+..++.++..++. .+..++...+|.|...|...+.+||.+|-.+|+.+.
T Consensus 177 e~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 177 ESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 322222111110 112356888999999999988776 355678889999999999999999999999999998
Q ss_pred hhccc---c-hHHHHHHHHHHHHHhhcCCC
Q 001855 952 EFGGS---V-VKPLVGEALSRLNVVIRHPN 977 (1004)
Q Consensus 952 ~~~~~---~-~~~~~~~~l~~L~~~l~~~~ 977 (1004)
+.... . ..+..+.+++.+..+-++.+
T Consensus 257 E~~~~~~~~~~~~~~~~l~~~l~~La~dS~ 286 (309)
T PF05004_consen 257 ELARDHEEDFLYEDMEELLEQLRELATDSS 286 (309)
T ss_pred HHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence 87764 2 24557788888887776543
No 139
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.53 E-value=0.022 Score=59.50 Aligned_cols=201 Identities=17% Similarity=0.140 Sum_probs=134.0
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhh-hhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCC-ccccc
Q 001855 421 SMVLNSFRDPHPRVRWAAINAIGQLST-DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-PEILT 498 (1004)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~l~ 498 (1004)
...+..+.+++...|..++..+..+.. ...+++.......++..+.+.++. ....-+.-|+.++.-++-.++ .....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 333445677889999999988887664 233444477788999999999987 555566677788887766643 12245
Q ss_pred CchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHhHhhhHhhHh--hhhHHHHH--HHhhcCc------ccchhhhH
Q 001855 499 PYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKA--ILVNATD------KSNRMLRA 566 (1004)
Q Consensus 499 ~~~~~i~~~l~~~l~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~--~l~~~~~------~~~~~l~~ 566 (1004)
..+..+.+.|.+.+.+.. ..+|..++.|++.+....+.+...+.. ..+..+.. +.+.... .+...+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 677788888888887654 467778888999887766544332221 33332222 1111111 12346888
Q ss_pred HHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhc
Q 001855 567 KSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1004)
Q Consensus 567 ~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (1004)
.|+.+++.+...++...+..++...++.+..+.++ .+..+|-++-.+++-+.....
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999888766777778888888886553 234577777777776655544
No 140
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.52 E-value=0.19 Score=53.85 Aligned_cols=239 Identities=19% Similarity=0.195 Sum_probs=132.6
Q ss_pred chHHHHHhHHHHHHHHHHhhcCC-------C-cc----hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001855 262 EPRFLRRQLVDVVGSMLQIAEAE-------S-LE----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1004)
Q Consensus 262 ~~~~~~~~~~~i~~~l~~~~~~~-------~-~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1004)
.|++|..++...++.+...+..+ + .+ +.++..+++.+...++. +. ..+.++++.++..+.+.
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~k--Y~----e~f~~~l~~fv~~vw~l 145 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEK--YE----EEFEPFLPTFVQAVWNL 145 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHH
Confidence 37888888888887766654211 1 11 23555666666655552 11 23456777788877777
Q ss_pred hcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCC---------CcchHH-----HHHHHH------------
Q 001855 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---------NTIVPV-----ASEQLP------------ 383 (1004)
Q Consensus 330 l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~---------~~~~~~-----l~~~l~------------ 383 (1004)
+........| ......++..|+..... +..+.. ++|.+.
T Consensus 146 L~~~~~~~~~---------------D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEdd 210 (370)
T PF08506_consen 146 LTKISQQPKY---------------DILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDD 210 (370)
T ss_dssp HTC--SSGGG---------------HHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHS
T ss_pred HHHhhhcccc---------------cHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccC
Confidence 7665433211 11223333333322211 111111 122211
Q ss_pred ------Hhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh---CCCCChhHHHHHHHHHHHhhhhhch--
Q 001855 384 ------AYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS---FRDPHPRVRWAAINAIGQLSTDLGP-- 451 (1004)
Q Consensus 384 ------~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~-- 451 (1004)
.-+. +.....|.||...+..+++...+...+.+...+..++.. -...+++-+.+|+..++.++.....
T Consensus 211 P~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~ 290 (370)
T PF08506_consen 211 PEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK 290 (370)
T ss_dssp HHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred HHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence 0011 123468889999999998876654444444444433331 2345789999999999998865421
Q ss_pred ----------hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHH
Q 001855 452 ----------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE 521 (1004)
Q Consensus 452 ----------~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~ 521 (1004)
++..=+...++|.+. .-.+ ..|-++..|+..+..+-...++ ..+..+++.+...+.+++.-|+.
T Consensus 291 ~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 291 SGVTQTNELVDVVDFFSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp TB-S-B-TTS-HHHHHHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhh
Confidence 121113445566665 2223 5788999999999999887764 46788999999999999988888
Q ss_pred HHHHHH
Q 001855 522 GALTAL 527 (1004)
Q Consensus 522 ~a~~~l 527 (1004)
.|..|+
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 777664
No 141
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.52 E-value=0.0016 Score=60.11 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=82.0
Q ss_pred HHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHH-hhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHH---Hhhc
Q 001855 879 FDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQ-CREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVC---AEFG 954 (1004)
Q Consensus 879 ~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l---~~~~ 954 (1004)
+..++|.+...++ ....-.|-.|...+.++++. .+..+.|.++++++.+..+|+..+++|...+..+|..+ ....
T Consensus 36 y~~~Lpif~dGL~-Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLR-ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhh-ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3457888888874 44445678899999999999 78889999999999999999999999999999999999 4555
Q ss_pred ccchHHHHHHHHHHHHHhhcCC
Q 001855 955 GSVVKPLVGEALSRLNVVIRHP 976 (1004)
Q Consensus 955 ~~~~~~~~~~~l~~L~~~l~~~ 976 (1004)
|+...||+.++|+.+.-..++.
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~ 136 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKN 136 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999665544
No 142
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.52 E-value=0.19 Score=56.36 Aligned_cols=314 Identities=13% Similarity=0.157 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCC
Q 001855 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1004)
Q Consensus 119 ~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 197 (1004)
..|-.++.-++..+.. ++-...+++-.....++..+ ..+.|+.++..+..+++.........-..++..+..--.+ .
T Consensus 5 ~~R~~a~~~l~~~i~~-~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~-~ 82 (464)
T PF11864_consen 5 SERIKAAEELCESIQK-YPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND-D 82 (464)
T ss_pred HHHHHHHHHHHHHHHh-CCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc-h
Confidence 3455555555555543 33234444444444555444 4578999999999999875542222223333333221111 1
Q ss_pred ChHHHHHHHHHHHHHHHhhcC--cchHhHHHhhHHHHHHHHHH---HHh-------------cCChhHHHHHHHHHHHHH
Q 001855 198 NPDVKIAALNAVINFIQCLTS--SADRDRFQDLLPLMMRTLTE---SLN-------------NGNEATAQEALELLIELA 259 (1004)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~---~l~-------------~~~~~~~~~a~~~L~~l~ 259 (1004)
+-..|..|+.+|..=-..+.. .+....+..+++...+.... ... +.+.......+..+..++
T Consensus 83 d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nvi 162 (464)
T PF11864_consen 83 DFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVI 162 (464)
T ss_pred hHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHH
Confidence 345566666655432111100 00111112222222211110 000 012233445667777777
Q ss_pred ccchHHHH-HhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001855 260 GTEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1004)
Q Consensus 260 ~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1004)
+.....+. ..+..++..++.+.......+++ ..++.++.++..... .| ..-+..++..+.......
T Consensus 163 Kfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~~-iP------~~sl~~~i~vLCsi~~~~----- 229 (464)
T PF11864_consen 163 KFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYGD-IP------SESLSPCIEVLCSIVNSV----- 229 (464)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcCc-CC------hHHHHHHHHHHhhHhccc-----
Confidence 65554444 45666777666665444334444 678889998887311 12 123344444444332211
Q ss_pred ccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhc------CCChhHHHHHHHHHHHHHhhcHHHH
Q 001855 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAKVM 412 (1004)
Q Consensus 339 ~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~~~ 412 (1004)
+....+-+++..|+.. ......+..+...+. ..+..+-.+|+..++.+.-+.++.-
T Consensus 230 --------------~l~~~~w~~m~nL~~S----~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~ 291 (464)
T PF11864_consen 230 --------------SLCKPSWRTMRNLLKS----HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQG 291 (464)
T ss_pred --------------ccchhHHHHHHHHHcC----ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCC
Confidence 0122233455555432 222334444444442 2456667799999999887763211
Q ss_pred HH----hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHH
Q 001855 413 VK----NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPAL 465 (1004)
Q Consensus 413 ~~----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~ll~~l 465 (1004)
.+ ....+++.+...++..++.|-...+.++..+. ..++..+....++.++..+
T Consensus 292 ~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~ 349 (464)
T PF11864_consen 292 YPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDII 349 (464)
T ss_pred cceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHH
Confidence 11 12348899999998888888777777777777 4444433233444444333
No 143
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.53 Score=58.54 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=126.1
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhHhhhccccH
Q 001855 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPHL 182 (1004)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~---~~~~r~~al~~l~~l~~~~~~~~~~~~ 182 (1004)
..++..+.....+.+|+.++.+++++... +..=.-..++..+...+++. ++..+.+++.+++...+.++..+..-.
T Consensus 54 ~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~ 132 (2067)
T KOG1822|consen 54 QQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGL 132 (2067)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchH
Confidence 34566666667889999999999998875 22111123344444444443 346677889999999999988877668
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc
Q 001855 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1004)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 262 (1004)
...++++.+..+.. ...+|..+...+.+....+...... ......+.......+.+....++..+.+|+..+....
T Consensus 133 edt~~if~~~~k~n-~s~~~~~i~~~l~~~~~~~g~~s~~---~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~ 208 (2067)
T KOG1822|consen 133 EDTVQIFTKLVKTN-ESFVRQEIMITLHNALKGMGGTSAA---TATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLG 208 (2067)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhc
Confidence 88889998888875 7788888888888887776422111 2223345555555566666779999999998887665
Q ss_pred hHHH-HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001855 263 PRFL-RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 263 ~~~~-~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1004)
+..+ ..-+.....++++.. ......+|....+++..+...
T Consensus 209 ~~~~~~Sele~~~s~cfk~~--~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 209 GPGLGTSELETLASYCFKGI--EISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred Cccccchhhhhhcceeeeee--ccchHHHHHHHHHHHHHHHhc
Confidence 5444 334445555555544 233566776666777766654
No 144
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.49 E-value=0.023 Score=57.55 Aligned_cols=230 Identities=12% Similarity=0.130 Sum_probs=148.7
Q ss_pred cccchHHHHHHHHHHhcCCCc----chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001855 353 SNYSVGQECLDRLAIALGGNT----IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 428 (1004)
Q Consensus 353 ~~~~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 428 (1004)
..|..|..+|..+...++++. -+..++.++...+ .+|..-..++.++..++.. ...-......++..+.+...
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~-~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKM-KNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhC-cCCChhhHHHHHHHHHHhCC
Confidence 355667777777776666432 3345566666655 4566666668888888732 22112234455555554333
Q ss_pred --CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHH
Q 001855 429 --DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (1004)
Q Consensus 429 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~ 506 (1004)
.-....|..+...+..+.+...... ...-..++..+++.+...++|+--..++..+..+..... +.++.+++.+
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~---~~~~~e~lFd 166 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD---ISEFAEDLFD 166 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---cchhHHHHHH
Confidence 2346789999999999888766555 455667888888888776889988888888888888776 3566777666
Q ss_pred HHHHHhh--------cCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhh
Q 001855 507 KLLVLLQ--------NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1004)
Q Consensus 507 ~l~~~l~--------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~ 578 (1004)
.+...+- ++..-.++..-.++.....+.+ .|.+..+|.+.+-+.+ +....|..++.++..++..
T Consensus 167 ~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa~~~~p~LleKL~s----~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 167 VFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFAPFAFPLLLEKLDS----TSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHHH
Confidence 6655331 1111123333333333222211 3566788888888754 2334778889999999999
Q ss_pred hChhhhhhhHHHHHHHHHH
Q 001855 579 VGKDKFRDDAKQVMEVLMS 597 (1004)
Q Consensus 579 ~~~~~~~~~~~~i~~~l~~ 597 (1004)
.|.+.+.+|...+-+.+..
T Consensus 239 y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9988899998888877764
No 145
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.49 E-value=0.0082 Score=60.24 Aligned_cols=190 Identities=19% Similarity=0.228 Sum_probs=122.7
Q ss_pred HHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-Hh
Q 001855 380 EQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QN 455 (1004)
Q Consensus 380 ~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~ 455 (1004)
+.+...++ +.++..++.++.+++..+..... ...+. ..++.+...+.++++.+|..|++++..++....... ..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 33444444 46899999999999997654322 12222 367888899999999999999999999886543321 14
Q ss_pred hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
.|.+.++..+...- -+..++.++.++|.++.-.-. ....+...++.++.++...+..+|..++.++.+++..-.
T Consensus 93 ~~i~~Vc~~~~s~~---lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 93 MYIPQVCEETVSSP---LNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HHHHHHHHHHhcCC---CCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 45555555554421 356889999999999853221 123344556677788888899999999999999875432
Q ss_pred hhhHh-hHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhCh
Q 001855 536 EHFQK-YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1004)
Q Consensus 536 ~~~~~-~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~ 581 (1004)
- ... .-.+.++.+..++.... ...+--+++..+..+...+++
T Consensus 167 ~-~~~Ll~~q~~~~~~~Lf~~~~---~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 167 M-TRELLSAQVLSSFLSLFNSSE---SKENLLRVLTFFENINENIKK 209 (254)
T ss_pred H-HHHHHhccchhHHHHHHccCC---ccHHHHHHHHHHHHHHHhhCc
Confidence 1 111 22356666777765432 233444456666666555543
No 146
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.48 E-value=0.1 Score=59.61 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcC
Q 001855 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 933 (1004)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~ 933 (1004)
..++..+.-.++.||-.++.-. ..++|.+.+-++.+....+|.+.+-++++++......+.. .+|.+...|.
T Consensus 945 ~~vra~~vvTlakmcLah~~La----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~----YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDR----YIPMIAASLC 1016 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHH----hhHHHHHHhc
Confidence 3456666667777777766432 2377888887766777888999999999999886655544 4677888999
Q ss_pred CCChhHHHHHHHHHHHHHhh
Q 001855 934 DENQDVRQAAVYGLGVCAEF 953 (1004)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~ 953 (1004)
|+++.||+.++..|..+...
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhh
Confidence 99999999999999988765
No 147
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.016 Score=65.30 Aligned_cols=189 Identities=14% Similarity=0.232 Sum_probs=141.7
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHH
Q 001855 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 465 (1004)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l 465 (1004)
+.++....|-+|+..+..+++.-...-......++...+..++|.++.|--.|...+..+++..+ ..++|.+
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL 807 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDL 807 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHH
Confidence 45677888999999999998844322223456788899999999999999888888888886544 4456666
Q ss_pred Hhh-cC--CCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH
Q 001855 466 AGA-MD--DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 542 (1004)
Q Consensus 466 ~~~-l~--~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 542 (1004)
.+. .+ +...++.+...-.++.+++...+ +....|...++...+..+.+++...|..++..+|.++....-....++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 552 22 21213444445588899988888 667799999999999999999888899999999999887665555677
Q ss_pred hhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhh
Q 001855 543 DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 587 (1004)
Q Consensus 543 ~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~ 587 (1004)
.+++..+....+. +....+|..|+..+..+..+.| +...|.
T Consensus 887 ~ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg-~dlLpi 927 (982)
T KOG4653|consen 887 HEVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTG-EDLLPI 927 (982)
T ss_pred HHHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccc-hhhHHH
Confidence 7887777777654 3456788889999999999888 556663
No 148
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.46 E-value=0.86 Score=59.76 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCC-CChh
Q 001855 860 VGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND-ENQD 938 (1004)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~ 938 (1004)
++..+..++.....-..|++.+++-.+...++ +....+-..++.++++++...|..+..+...+++.+.+.+.+ .+..
T Consensus 627 ~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~-~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~ 705 (2341)
T KOG0891|consen 627 SAKLLCELIISSPVLISPYVGPILLVLLPKLQ-DPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLG 705 (2341)
T ss_pred HHHHhhHHHHHHHHHHHhhcCchHHHHHHHHh-ccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhh
Confidence 44555555555555667777777777777774 444466677899999999999988877888899999999887 5688
Q ss_pred HHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHh
Q 001855 939 VRQAAVYGLGVCAEFGGSVVKPL--VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1004)
Q Consensus 939 vr~~a~~~lg~l~~~~~~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~ 999 (1004)
.|+++.+++|.+....+-.+.|| +|.++..|.+.+..+ ....+|.-++..+|....
T Consensus 706 rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te-----~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 706 KRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTE-----QSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred chhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHh-----hhhHHHHHHHHHhhhhcc
Confidence 99999999999999999888887 799999999998765 356777788887775543
No 149
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.38 E-value=0.18 Score=52.62 Aligned_cols=354 Identities=14% Similarity=0.088 Sum_probs=178.3
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCC--CcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHh
Q 001855 56 SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDS--FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1004)
Q Consensus 56 ~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~--~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~ 133 (1004)
.+...++.+++....++..+....++-.++..+.. ..+.......++..-..++..|.+ .+..+-+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r-~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR-QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence 45566777776655566667777777777765410 001111111111112246677776 688888888999999887
Q ss_pred cccCC---CCcchHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhHhh--hc--cccHHHHHHHHHHhhcCCCChHHHHHH
Q 001855 134 NILPE---NGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGD--TL--TPHLKHLHAVFLNCLTNSNNPDVKIAA 205 (1004)
Q Consensus 134 ~~~~~---~~~~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~--~~--~~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (1004)
...-. ....-.+..|...+++ .++..+..+.+||..+...-.- .+ ..-...+++.+. +...+-.++...
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYqs 220 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQS 220 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHHH
Confidence 53221 1333456667777766 4667777788888877654211 11 112344444443 222366777777
Q ss_pred HHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHH------HHHhHHHHHHHHHH
Q 001855 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF------LRRQLVDVVGSMLQ 279 (1004)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~i~~~l~~ 279 (1004)
+-|+-.+.-.- .....-...+.++.+...+.+.. .+.+.+-++.++..++...+.. ..+.+..=+...++
T Consensus 221 ifciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 221 IFCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 77665544210 00000011244555555555433 5567777788888887766421 11111100111112
Q ss_pred hh-cCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchH
Q 001855 280 IA-EAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1004)
Q Consensus 280 ~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a 358 (1004)
.+ +.+-.+++++. .++++..-...+ ......+..|...+..-.+ +|++....
T Consensus 297 ~L~~rkysDEDL~~-di~~L~e~L~~s---vq~LsSFDeY~sEl~sG~L-----------------------~WSP~Hk~ 349 (442)
T KOG2759|consen 297 SLEERKYSDEDLVD-DIEFLTEKLKNS---VQDLSSFDEYKSELRSGRL-----------------------EWSPVHKS 349 (442)
T ss_pred HHHhcCCCcHHHHH-HHHHHHHHHHHH---HHhhccHHHHHHHHHhCCc-----------------------CCCccccc
Confidence 22 22233444433 344444433321 0000111122222221111 12222222
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHhhCCCCChhHH
Q 001855 359 QECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLNSFRDPHPRVR 435 (1004)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr 435 (1004)
......=+..+. +. --.++..+...++. .++..-..|+.=+|..++..|+... .+.. .=..+++.+++++|.||
T Consensus 350 e~FW~eNa~rln-en-nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vr 426 (442)
T KOG2759|consen 350 EKFWRENADRLN-EN-NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVR 426 (442)
T ss_pred cchHHHhHHHHh-hc-cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHH
Confidence 222222222221 11 11244555555554 4577778888899999988775321 1111 22567788999999999
Q ss_pred HHHHHHHHHhhh
Q 001855 436 WAAINAIGQLST 447 (1004)
Q Consensus 436 ~~a~~~l~~l~~ 447 (1004)
..|+.++..+..
T Consensus 427 y~ALlavQ~lm~ 438 (442)
T KOG2759|consen 427 YHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.38 E-value=0.17 Score=56.26 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHH
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~ 147 (1004)
..+...+++|+.++-++++. ++.+.++ --+.++.++.+ .+..||..+...|..+++. .+ +..+.+...
T Consensus 33 kg~~k~K~Laaq~I~kffk~-----FP~l~~~----Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~-~~-~~v~kvaDv 100 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKH-----FPDLQEE----AINAQLDLCED-EDVQIRKQAIKGLPQLCKD-NP-EHVSKVADV 100 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC------GGGHHH----HHHHHHHHHT--SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh-----ChhhHHH----HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHh-HH-HHHhHHHHH
Confidence 45789999999999998765 3444443 34567777776 6899999999999988874 33 355788999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHh
Q 001855 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1004)
Q Consensus 148 L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 227 (1004)
|.|++++.++......=.+|..+....+.. .+..++..+... ... +..+|..+++.|..-+..+...... .-.+
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~-de~~Re~~lkFl~~kl~~l~~~~~~-p~~E 174 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSG-DEQVRERALKFLREKLKPLKPELLT-PQKE 174 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS--HHHHHHHHHHHHHHGGGS-TTTS----HH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccC-chHHHHHHHHHHHHHHhhCcHHHhh-chHH
Confidence 999999888776666666666666554332 122222222211 123 6789999999887655544322111 0011
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhh
Q 001855 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA 281 (1004)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~ 281 (1004)
.-..++..+...+++-..+.....+.+|..+--.....-.+...++++.+....
T Consensus 175 ~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa 228 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQA 228 (556)
T ss_dssp HHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHh
Confidence 122455555555554333333344444443321000111233456666666544
No 151
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.022 Score=64.21 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=142.9
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccC
Q 001855 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1004)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~ 499 (1004)
+...+..+.|+.+.+|..++..+..+++.-.+.. ...-..++...+..+.| .++-|-..|+..+..+++..+. .
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcevy~e----~ 802 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEVYPE----D 802 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHhcch----h
Confidence 4555667889999999999999999998543322 33567888999999999 8999999999999999987663 2
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhh
Q 001855 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~ 579 (1004)
.++.+.+...+.-+....+.|-.+=++++.++.+.|+-+..|...++...+..+.. .+...|..++..+|.++...
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvre----pd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVRE----PDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC----chHHHHHhHHHHHHHHHHHH
Confidence 34555554444433443444555559999999999998889999888888887652 35567888899999888654
Q ss_pred ChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccch
Q 001855 580 GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM 632 (1004)
Q Consensus 580 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 632 (1004)
. -.....+-++...++.+... +..-.+|.++...+..+-..+|.++.|++
T Consensus 879 a-~~vsd~~~ev~~~Il~l~~~--d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 879 A-FQVSDFFHEVLQLILSLETT--DGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred h-hhhhHHHHHHHHHHHHHHcc--CCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 3 11223444555555553321 22334778888888888888998877754
No 152
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.26 Score=55.42 Aligned_cols=343 Identities=14% Similarity=0.181 Sum_probs=194.8
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcC--CChhHHHHHHHHHHHhhhhHh--------
Q 001855 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIG-------- 175 (1004)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~--~~~~~r~~al~~l~~l~~~~~-------- 175 (1004)
..|...+.+..-..-|+.++..+..+++.+-. ..-..=++.|++.++. .+++....++.++..+...-.
T Consensus 25 ~kLcDRvessTL~eDRR~A~rgLKa~srkYR~-~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds 103 (970)
T KOG0946|consen 25 EKLCDRVESSTLLEDRRDAVRGLKAFSRKYRE-EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS 103 (970)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHH-HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence 45666665555567788899999888875321 1111224444454442 367777788888877765421
Q ss_pred ---hh----ccc---cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCCh
Q 001855 176 ---DT----LTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE 245 (1004)
Q Consensus 176 ---~~----~~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 245 (1004)
++ +.. .-+..+..++..+... +-.||..+++.+.+++...+. ......-..|.-+..+...+.+..+
T Consensus 104 ~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~--e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 104 TQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPT--ELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred hhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCH--HHHHHHHHCchhHHHHHHHHhhhhh
Confidence 11 111 1245667777777776 899999999999999987532 1222233457777778888888788
Q ss_pred hHHHHHHHHHHHHHccchHHHH-HhHHHHHHHHHHhhcCCC-cch-HHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q 001855 246 ATAQEALELLIELAGTEPRFLR-RQLVDVVGSMLQIAEAES-LEE-GTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (1004)
Q Consensus 246 ~~~~~a~~~L~~l~~~~~~~~~-~~~~~i~~~l~~~~~~~~-~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (1004)
.+|..++-.|..++...+..-. -.+..+++-++.++.+.. .+. -|..-|+.++..+.++......+++. ..-
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-----~~~ 255 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-----GSY 255 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-----ccc
Confidence 8999999999999987765322 124466777777775432 333 36778888888888852211222221 234
Q ss_pred HHHHHHhhcCCCCCccccCCCCCCccccCCcccch-----HHHHHHHHHHhcCCCc---------chHHHHHHHHHhhcC
Q 001855 323 FAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-----GQECLDRLAIALGGNT---------IVPVASEQLPAYLAA 388 (1004)
Q Consensus 323 ~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~-----a~~~l~~l~~~~~~~~---------~~~~l~~~l~~~l~~ 388 (1004)
+|.+.+.+....-. |++...|+..+. +.+++..+...-.+.. ....++..+...+.+
T Consensus 256 i~rL~klL~~f~~~---------d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFG---------DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH 326 (970)
T ss_pred HHHHHhhcCccccc---------CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence 55555444322111 101113333222 3334443332110000 112345555555555
Q ss_pred C--ChhHHHHHHHHHHHHHhhcHHH---HH----HhH----HHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHH
Q 001855 389 P--EWQKHHAALIALAQIAEGCAKV---MV----KNL----EQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQ 454 (1004)
Q Consensus 389 ~--~~~~r~aal~~l~~l~~~~~~~---~~----~~l----~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1004)
+ -..++..++...+.++.++... +. ++. +.++-.+....... .+..|.+++.|+..+...-. +..
T Consensus 327 ~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~-~gq 405 (970)
T KOG0946|consen 327 PGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND-DGQ 405 (970)
T ss_pred CCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch-hhH
Confidence 4 3567788888888888876532 11 222 23444444455554 35678888888877654221 112
Q ss_pred hhhhhhhHHHHHh
Q 001855 455 NQFHPQVLPALAG 467 (1004)
Q Consensus 455 ~~~~~~ll~~l~~ 467 (1004)
..++..++|....
T Consensus 406 ~~~l~tllp~~~n 418 (970)
T KOG0946|consen 406 RKFLKTLLPSSTN 418 (970)
T ss_pred HHHHHHHhhhhcc
Confidence 4456666665443
No 153
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.33 E-value=0.0028 Score=59.35 Aligned_cols=143 Identities=21% Similarity=0.246 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHhh-cHHHHHHhHHHHHHHH------------HhhCCCCChhHHHHHHHHHHHhhhhhchhHH----
Q 001855 392 QKHHAALIALAQIAEG-CAKVMVKNLEQVLSMV------------LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---- 454 (1004)
Q Consensus 392 ~~r~aal~~l~~l~~~-~~~~~~~~l~~i~~~l------------~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 454 (1004)
++|.+|+.+++.++.. .+..+..|...++|.- .-.+.|+++++|.+|+.++..+.+..++.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788899999988887 3444555555555433 2346899999999999999998876543221
Q ss_pred ---------------hhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccc-cCchHHHHHHHHHHhhcCChh
Q 001855 455 ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLLVLLQNGKQM 518 (1004)
Q Consensus 455 ---------------~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l-~~~~~~i~~~l~~~l~~~~~~ 518 (1004)
...+.++=..++..++.+.+..+....+.++..++.+.+-..+ ..+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0112223333444555546777888899999999987764433 256778888888888899999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001855 519 VQEGALTALASVADSS 534 (1004)
Q Consensus 519 vr~~a~~~l~~l~~~~ 534 (1004)
++..++.+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999987654
No 154
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.33 E-value=0.00034 Score=43.96 Aligned_cols=30 Identities=50% Similarity=0.639 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 001855 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1004)
Q Consensus 924 l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1004)
++|.+++.++|+++.||.+|+++||.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999875
No 155
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.29 E-value=1.2 Score=57.55 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCC-HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC--CCCcchH
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPEL 144 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~-~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l 144 (1004)
+.+..++.+|.-.||+.--+.. .++.++ -..++.+.+.+...+.+..+..+|..+.+++..+...... ...|..+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfl--e~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFL--EREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhc--chhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 4467889999998888655430 012221 1233334455555566567789999999999988654332 2599999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc----ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCc-
Q 001855 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS- 219 (1004)
Q Consensus 145 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~- 219 (1004)
+..+.....+..+.....|+.++..+++..-..+. ..+..++..+..+.+...+.++-..|+..|..+...+-+.
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999888888888888899999988876433222 3556666666666554434566667777777654433100
Q ss_pred ------------------------c------hH-hHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHH
Q 001855 220 ------------------------A------DR-DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1004)
Q Consensus 220 ------------------------~------~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 268 (1004)
. .. ....-|+| ++..+.....++.+++|..|++.|-.+...++..|.+
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCH
Confidence 0 00 11122344 3333444555789999999999999888877665554
No 156
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.24 E-value=0.051 Score=60.21 Aligned_cols=142 Identities=10% Similarity=0.214 Sum_probs=92.8
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchH
Q 001855 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1004)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~ 502 (1004)
|+.+.+ .++.++..|+..|.++...++. .-+..+..++....| .+..||..|+..|-.+|...+ .+++
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~-----~~v~ 95 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDNP-----EHVS 95 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T-------T-HH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHH-----HHHh
Confidence 334443 3578999999999999988864 457788888888889 899999999999999987643 5779
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh-hhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhCh
Q 001855 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1004)
Q Consensus 503 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~ 581 (1004)
.+...|.++++..++.....+-.++..+...-.. .+...++++.+. ..++..+|.+++..|..-...++.
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~---------~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS---------KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---------ccCchHHHHHHHHHHHHHHhhCcH
Confidence 9999999999988887777777777777765543 233333333321 113346888888888766666666
Q ss_pred hhhh
Q 001855 582 DKFR 585 (1004)
Q Consensus 582 ~~~~ 585 (1004)
+.+.
T Consensus 167 ~~~~ 170 (556)
T PF05918_consen 167 ELLT 170 (556)
T ss_dssp TTS-
T ss_pred HHhh
Confidence 6665
No 157
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.021 Score=58.28 Aligned_cols=147 Identities=17% Similarity=0.134 Sum_probs=102.5
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh-hhhhhHHHHH
Q 001855 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALA 466 (1004)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~l~ 466 (1004)
+.+...|+.|+.-|..+++.......-+--..+..++..++++++.+|..|+++++..+..-+... .. .-...++.++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ-EQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcccHHHHH
Confidence 457889999999999999876542211111233445558999999999999999999988755432 12 1234677788
Q ss_pred hhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchH-HHHHHHHHHhhc--CChhHHHHHHHHHHHHHHHhHh
Q 001855 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 467 ~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~-~i~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
..+...++..+|..|..|++.++++..+. ...++. .=...|..++++ .+.+.+..++..++.+......
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g-~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPG-QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHH-HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 87775466788999999999999987642 112211 115677778887 5677788888888888776543
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.046 Score=63.00 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=101.8
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001855 390 EWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1004)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~ 467 (1004)
+.+.|..|.+.|+.++.+.......-+ .+++...+..++|+ .|..|.-+|.|||++-+.+...--...-...-..++.
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 368899999999999998664333333 45777888888885 8999999999999987765432102223445567788
Q ss_pred hcCCCCChhHHHHHHHHHHHHhhcCCcc----------ccc-----CchHHHHH----HHHHHhhcCChhHHHHHHHHHH
Q 001855 468 AMDDFQNPRVQAHAASAVLNFSENCTPE----------ILT-----PYLDGIVS----KLLVLLQNGKQMVQEGALTALA 528 (1004)
Q Consensus 468 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~----------~l~-----~~~~~i~~----~l~~~l~~~~~~vr~~a~~~l~ 528 (1004)
.|.| +.++||.+|..||+.++.+...+ .+. .-.++++. .++..+++..+.+|.....++.
T Consensus 650 ~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 650 LLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 8899 99999999999999999864210 000 11223333 5566777888888888777777
Q ss_pred HHHHHhHhh
Q 001855 529 SVADSSQEH 537 (1004)
Q Consensus 529 ~l~~~~~~~ 537 (1004)
.++.....+
T Consensus 729 ~~~~g~~~~ 737 (1387)
T KOG1517|consen 729 HFVVGYVSH 737 (1387)
T ss_pred HHHHhhHHH
Confidence 766544433
No 159
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.20 E-value=0.0052 Score=57.54 Aligned_cols=141 Identities=20% Similarity=0.201 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHhcccCC---CCcchHHHHH------------HHhhcCCChhHHHHHHHHHHHhhhhHhhh------
Q 001855 119 SISKKLCDTVSELASNILPE---NGWPELLPFM------------FQCVSSDSVKLQESAFLIFAQLSQYIGDT------ 177 (1004)
Q Consensus 119 ~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~L------------~~~l~~~~~~~r~~al~~l~~l~~~~~~~------ 177 (1004)
++|..+..++..+++...++ +.|+.++|.- .-.+.|+++.+|.+|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37888899999999873343 5888887765 22345778899999999999998764321
Q ss_pred -------cc-------ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC
Q 001855 178 -------LT-------PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1004)
Q Consensus 178 -------~~-------~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 243 (1004)
|. ..+.++...+...++.+.+..+....++|+..++...+- ...-.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY---~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY---HRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh---hhcCHhHHHHHHHHHHHHHhcC
Confidence 21 234666677777888776788888999999999887531 1122467778888888888888
Q ss_pred ChhHHHHHHHHHHHHHccc
Q 001855 244 NEATAQEALELLIELAGTE 262 (1004)
Q Consensus 244 ~~~~~~~a~~~L~~l~~~~ 262 (1004)
|.+++..++.+++.++...
T Consensus 158 d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCcHHHHHHHHHHHHHcCC
Confidence 9999999999999887643
No 160
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.13 E-value=0.074 Score=57.43 Aligned_cols=254 Identities=20% Similarity=0.231 Sum_probs=136.7
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH
Q 001855 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1004)
Q Consensus 143 ~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 222 (1004)
...+.+.+.+.++++.+|..+...++.+.. ...++.+...+.+. ++.+|..|..+|+.+-. .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~-------~ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDE-DPRVRDAAADALGELGD-------P 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC-------h
Confidence 557777777777777788777777553322 45666777777887 88888888876554332 1
Q ss_pred hHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCC----------cchHHHH
Q 001855 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES----------LEEGTRH 292 (1004)
Q Consensus 223 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~----------~~~~vr~ 292 (1004)
..+|.++..+.. +++..+|..+...|..+..... +.. ++..+.... ....+|.
T Consensus 105 ----~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a------~~~----l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ----EAVPPLVELLEN---DENEGVRAAAARALGKLGDERA------LDP----LLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ----hHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh------hHH----HHHHhccchhhhhhhhccchHHHHHH
Confidence 122233333332 5677888888888887754332 111 122221111 1113444
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCC
Q 001855 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (1004)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~ 372 (1004)
.+...+..+.. +..++.+...+... ....+..+...+..+....
T Consensus 168 ~a~~~l~~~~~----------------~~~~~~l~~~l~~~-----------------~~~vr~~Aa~aL~~~~~~~--- 211 (335)
T COG1413 168 AAAEALGELGD----------------PEAIPLLIELLEDE-----------------DADVRRAAASALGQLGSEN--- 211 (335)
T ss_pred HHHHHHHHcCC----------------hhhhHHHHHHHhCc-----------------hHHHHHHHHHHHHHhhcch---
Confidence 44444333322 11222222222211 1113344444444443211
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001855 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1004)
..+.+.+...+.+++|.+|..++.+++.+-. ....+.+...+.+.++.++..+....+.+
T Consensus 212 ---~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~------- 271 (335)
T COG1413 212 ---VEAADLLVKALSDESLEVRKAALLALGEIGD----------EEAVDALAKALEDEDVILALLAAAALGAL------- 271 (335)
T ss_pred ---hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----------chhHHHHHHHHhccchHHHHHHHHHhccc-------
Confidence 3455667778888889999888888886543 23345556666777777766655554411
Q ss_pred HHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC
Q 001855 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1004)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 492 (1004)
........+...+.+ ....++..+..++..+....
T Consensus 272 ----~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 272 ----DLAEAALPLLLLLID-EANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ----CchhhHHHHHHHhhc-chhhHHHHHHHHHHhhcccc
Confidence 112223334444555 56677777777777765433
No 161
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=2.1 Score=57.26 Aligned_cols=358 Identities=18% Similarity=0.153 Sum_probs=205.0
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 001855 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQEALELLI 256 (1004)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~ 256 (1004)
+.|+++-++..+..+++. ++++...+++.+.-++.......-...+....+.+++.|+..+... +...-..|+++|+
T Consensus 715 Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILG 792 (3550)
T KOG0889|consen 715 LLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILG 792 (3550)
T ss_pred hhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 557888888888888886 6889999999999999887433333335556677888888777653 6778889999999
Q ss_pred HHHccchHHHHH-----------------------------hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhc
Q 001855 257 ELAGTEPRFLRR-----------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (1004)
Q Consensus 257 ~l~~~~~~~~~~-----------------------------~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 307 (1004)
.+....-.++.. .+.+.+...+..+.....+...|.++...+.......-.
T Consensus 793 KlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~ 872 (3550)
T KOG0889|consen 793 KLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVN 872 (3550)
T ss_pred hhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHh
Confidence 998766433211 123444445555444444666777777666554432100
Q ss_pred cchhhhcchhhHHHHHHHHHHh---hcCCCCCccccCCCCCCccccCCc-----------------ccchHHHHHHHHHH
Q 001855 308 APGMMRKLPQFINRLFAILMSM---LLDIEDDPLWHSAETEDEDAGESS-----------------NYSVGQECLDRLAI 367 (1004)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~---l~~~~~~~~~~~~~~~~~d~~~~~-----------------~~~~a~~~l~~l~~ 367 (1004)
.. ..+......+.+..... ..+......|........+..+.. .+..+...+..+..
T Consensus 873 ~~---~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~ 949 (3550)
T KOG0889|consen 873 LS---ADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILR 949 (3550)
T ss_pred hh---ccchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHH
Confidence 11 01111111122211100 000000000000000000000000 00111111111110
Q ss_pred h---------cCC---------------Ccc-hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH--------HHHH
Q 001855 368 A---------LGG---------------NTI-VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--------VMVK 414 (1004)
Q Consensus 368 ~---------~~~---------------~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--------~~~~ 414 (1004)
+ .++ ..+ -..+++.+.+.+...+...+.++..++..+...... ...+
T Consensus 950 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lp 1029 (3550)
T KOG0889|consen 950 HFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLP 1029 (3550)
T ss_pred HHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccc
Confidence 0 010 001 123567777778888889999999999888765432 2235
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHH----HHHHHHHHHHhh
Q 001855 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ----AHAASAVLNFSE 490 (1004)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~----~~a~~~l~~l~~ 490 (1004)
.++.+++.+...-.++.+.-|...+..|+.+.+.++..+.-.+...++..++..+.+ ...++. ..+-..+..+..
T Consensus 1030 i~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d-~~~e~~~~~~~~~~~~l~~ll~ 1108 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKD-TESEVSSLPLDEAKDILMDILR 1108 (3550)
T ss_pred hHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcC-CccccccchHHHHHHHHHHHHH
Confidence 667788888888888999999999999999998887655556677788888777776 222221 233334444433
Q ss_pred cC----Cc-ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhh
Q 001855 491 NC----TP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1004)
Q Consensus 491 ~~----~~-~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 541 (1004)
.+ .. +.-......++..+..-+-+++..||+.+..++..+....+......
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L 1164 (3550)
T KOG0889|consen 1109 VIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKL 1164 (3550)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 22 11 11123456667777777888899999999999999988876544433
No 162
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.12 E-value=0.66 Score=51.40 Aligned_cols=428 Identities=12% Similarity=0.056 Sum_probs=210.8
Q ss_pred chHhHHHHHHHHHHHHHhcccCCCCc-----chHHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhHhh---hccccHHHHH
Q 001855 116 SAKSISKKLCDTVSELASNILPENGW-----PELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGD---TLTPHLKHLH 186 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~L~~~l~~~~-~~~r~~al~~l~~l~~~~~~---~~~~~~~~l~ 186 (1004)
......+..+.+++..+..+-. .. ...++.+++++.+++ .+++.+.+.+++.+.+..+. ....+..+++
T Consensus 65 ~s~~~k~~~~~llns~f~~eqd--~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi 142 (678)
T KOG1293|consen 65 GSTELKNGFAVLLNSLFLGEQD--KVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSII 142 (678)
T ss_pred CchhhhhhHHHHHHhHHhhccc--hHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 3445556677777777654321 22 234688889998888 78999999999999887532 2333556666
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhH--HHhhHHHHHHHHHHHHhcCChhHHHHHHHHHH---HHHcc
Q 001855 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR--FQDLLPLMMRTLTESLNNGNEATAQEALELLI---ELAGT 261 (1004)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~---~l~~~ 261 (1004)
+.+.-.+..+.....+.-+ ..+.+.......+. +.. .+.+.+.-+........|.+++.++. .++.+
T Consensus 143 ~~~s~l~s~~lk~~~~l~~-----~~~a~~s~~~~hq~Il~Na---~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~N 214 (678)
T KOG1293|consen 143 VKFSLLYSIELKYISRLDV-----SRAAHLSSTKDHQLILCNA---GILEKINILLMYLSSKLRLAALLCLSRGDRILRN 214 (678)
T ss_pred HHHHHHHhhhhhhhhhhhh-----hhhccccccchhhheeccc---cchhhHHHHHHhhhHHHHHHHHHHhhccceeeec
Confidence 6655544422111111111 11111111101110 011 12222222222235578889999998 55555
Q ss_pred chHHHHHhHH-----HHHH--HHHHhhcCCCcchHHHHHHHHHHHHHHHhh-hccchhh-hcchhhHHHHHHH--HHHhh
Q 001855 262 EPRFLRRQLV-----DVVG--SMLQIAEAESLEEGTRHLAIEFVITLAEAR-ERAPGMM-RKLPQFINRLFAI--LMSML 330 (1004)
Q Consensus 262 ~~~~~~~~~~-----~i~~--~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~-~~~~~~~-~~~~~~~~~l~~~--l~~~l 330 (1004)
.+..-...++ .+.+ ...++..+ .+.+.|..+++++..+.+.. .+.|-.+ ..+.+.....+-. +...+
T Consensus 215 n~~~sm~~l~~L~d~~v~~r~~v~rL~k~--~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~ 292 (678)
T KOG1293|consen 215 NPLGSMFLLGLLKDKGVNIRCVVTRLLKD--PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLM 292 (678)
T ss_pred CchhHHHHHHHHhccccchhhhhhhhhhC--CCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheee
Confidence 5433222222 1111 11222333 34455677777777776642 1111111 1111111111111 11111
Q ss_pred cCCCCCccccCCCCCCccccCCcccchHHHHHHH-HHHhcCC----CcchHHHHHHHHH--hhcCCChhHHHHHHH---H
Q 001855 331 LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDR-LAIALGG----NTIVPVASEQLPA--YLAAPEWQKHHAALI---A 400 (1004)
Q Consensus 331 ~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~-l~~~~~~----~~~~~~l~~~l~~--~l~~~~~~~r~aal~---~ 400 (1004)
.+|.|...+ .....-|+.. ++..... ....+.....+.. -++....+.|.-++. .
T Consensus 293 ----~~P~~s~l~-----------~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i 357 (678)
T KOG1293|consen 293 ----NDPGLSTLD-----------HTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLI 357 (678)
T ss_pred ----cCCceeehh-----------hhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhh
Confidence 223232111 0111111111 2221111 1122222222221 123344444444432 2
Q ss_pred HHHHHhhcHHHHHHhHHH--HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHH
Q 001855 401 LAQIAEGCAKVMVKNLEQ--VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 478 (1004)
Q Consensus 401 l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~ 478 (1004)
......+......+++.. ....+.......+..++.+||.++-.+......--...--..++..+++.+.+ +...|.
T Consensus 358 ~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d-p~~~i~ 436 (678)
T KOG1293|consen 358 LNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD-PEIMIM 436 (678)
T ss_pred hhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC-cchhHH
Confidence 222222222222333321 22333333455677788899888877665442211011234667777777788 888999
Q ss_pred HHHHHHHHHHhhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhH--hhHhhhhHHHHHHHhh
Q 001855 479 AHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVN 555 (1004)
Q Consensus 479 ~~a~~~l~~l~~~~~~~~l~~~~-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~ 555 (1004)
..+.+++.+++-.+++- -..++ ...++.+.+.+.+++..+|..+..++..+...+.+.+. ++..--...+...++
T Consensus 437 ~~~lgai~NlVmefs~~-kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n- 514 (678)
T KOG1293|consen 437 GITLGAICNLVMEFSNL-KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN- 514 (678)
T ss_pred HHHHHHHHHHHhhcccH-HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh-
Confidence 99999999999877631 11222 24677888888999999999999999998876665432 333333444444432
Q ss_pred cCcccchhhhHHHHHHHHHHH
Q 001855 556 ATDKSNRMLRAKSMECISLVG 576 (1004)
Q Consensus 556 ~~~~~~~~l~~~a~~~l~~l~ 576 (1004)
+.++.++++++..+..+.
T Consensus 515 ---d~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 515 ---DPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred ---CCCHHHHHHHHHHHHHhh
Confidence 356778888777666653
No 163
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.10 E-value=0.00072 Score=42.48 Aligned_cols=30 Identities=33% Similarity=0.664 Sum_probs=26.7
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001855 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1004)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1004)
++|.+++.++|+++.||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 164
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.07 E-value=0.14 Score=55.22 Aligned_cols=262 Identities=23% Similarity=0.244 Sum_probs=150.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch
Q 001855 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1004)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 263 (1004)
...+.+.+.+.++ +..+|..+...++.+-.. ..++.+...+.+.++.+|..+...|+.+..
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~~---------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGSE---------------EAVPLLRELLSDEDPRVRDAAADALGELGD--- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhchH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC---
Confidence 4566777788887 899999998775443321 344455666678888999999997776642
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCC
Q 001855 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1004)
Q Consensus 264 ~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1004)
+..++.+...+.. +.+..+|..+...+..+-.. .. +..++..+.+......+...
T Consensus 104 -------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~------------~a----~~~l~~~l~~~~~~~a~~~~- 158 (335)
T COG1413 104 -------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDE------------RA----LDPLLEALQDEDSGSAAAAL- 158 (335)
T ss_pred -------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCch------------hh----hHHHHHHhccchhhhhhhhc-
Confidence 2223333333332 56788999888877766441 11 22223333221100000000
Q ss_pred CCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001855 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1004)
Q Consensus 344 ~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1004)
+......+..+...+..+ | .+...+.+...+.+....+|.++..+++.+.... ..+.+.+
T Consensus 159 ----~~~~~~~r~~a~~~l~~~----~----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 159 ----DAALLDVRAAAAEALGEL----G----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred ----cchHHHHHHHHHHHHHHc----C----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 000111122222222222 1 2234455667778888899999999999887653 3455777
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHH
Q 001855 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1004)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~ 503 (1004)
...+.|+++.+|..++..++.+.. ....+.+...+.+ .+..++..+..++. . -....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~-~~~~~~~~~~~~~~------~-----~~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALED-EDVILALLAAAALG------A-----LDLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhc-cchHHHHHHHHHhc------c-----cCchh
Confidence 788899999999999988877642 2344555666666 66666655554444 1 11122
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001855 504 IVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1004)
Q Consensus 504 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 532 (1004)
....+...+.+....++..+...++.+..
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 22334445555566666666665555443
No 165
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.05 E-value=0.022 Score=57.18 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=120.5
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcc--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh--hcccc
Q 001855 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLTPH 181 (1004)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~--~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~--~~~~~ 181 (1004)
+.|+..|....++.++..+..+++..+.+....+.+. ..++.+..++.++++.+|..|+.++..+...... .+..+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4577888876789999999999999876544333332 3578889999999999999999999988776443 33445
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc
Q 001855 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1004)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~ 261 (1004)
++++...+. ..+-+..++.+++++|.++.-.. .....+...+|.+ ...+..++...+..++++|..+.+.
T Consensus 95 i~~Vc~~~~---s~~lns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~l----l~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEETV---SSPLNSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDL----LSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHh---cCCCCCHHHHHHHHHHHccCCCc---chhhhHHhhHHHH----HHHHHcCChHHHHHHHHHHHHhccC
Confidence 555444433 33336789999999999985321 1233344444544 4555567889999999999988764
Q ss_pred chHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001855 262 EPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 262 ~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1004)
.. .....+. +....++.+.. .+...++...++.++..+.+.
T Consensus 165 p~-~~~~Ll~~q~~~~~~~Lf~-~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PD-MTRELLSAQVLSSFLSLFN-SSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HH-HHHHHHhccchhHHHHHHc-cCCccHHHHHHHHHHHHHHHh
Confidence 42 2222111 23333333332 233455566666666666553
No 166
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=1.1 Score=52.06 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=67.9
Q ss_pred HHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Q 001855 710 IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASML 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 789 (1004)
+.+++.....++++. +-.+|-.|...+...+.... .-+..+-+++...+|.+++.+..+ ++-++..++
T Consensus 801 v~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La----------~~~n~LlPlvhq~W~~vie~~~~k-~~L~v~~a~ 868 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLA----------TYHNLLLPLVHQTWPSVIECLLCK-DPLIVQRAF 868 (1014)
T ss_pred HHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHh----------ccchhHhHHHHhhhhHHHHHHhcC-chHHHHHHH
Confidence 445555555666654 66788888877765554431 124456778888889988887665 777888889
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001855 790 DSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRK 826 (1004)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 826 (1004)
.++..+...+|..+ ...+++.+++.+...+.+.
T Consensus 869 ~~i~~m~~~sgDFv----~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 869 SCIEQMGKYSGDFV----ASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHH
Confidence 99888888877633 2356777777777665543
No 167
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.99 E-value=0.39 Score=50.10 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH---HH-HHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhhhhhc
Q 001855 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK---VM-VKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLG 450 (1004)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---~~-~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1004)
|.++.++..++.+.+.....++..++|.+++.-.- .+ ...++.+++.+.+ --.|.+.+++.+++.++..+.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 45788888999999999999999999999986432 11 2334555665555 3346788889999999998875333
Q ss_pred hhHHhhhh-hhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCc--ccccCchHHHHHHHHHHhhcCC
Q 001855 451 PDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLLVLLQNGK 516 (1004)
Q Consensus 451 ~~~~~~~~-~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~--~~l~~~~~~i~~~l~~~l~~~~ 516 (1004)
... .+. ..+.+.++..++. ..|.|.-.-...++.+....+. ..+ .--+.+++.|..--++++
T Consensus 394 nka--~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL-~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 394 NKA--HFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACEL-AKNPELFEKLVDWSKSPD 458 (604)
T ss_pred chh--hccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHH-hcCHHHHHHHHHhhhCCc
Confidence 321 222 3466777777777 6677877777777766654321 001 111345555555544544
No 168
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.89 E-value=0.67 Score=52.58 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=60.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhhc---CchHH--HHHHHHHHccCC-CHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 26 TLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSL--TLKLAHLLQRSP-HPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 26 ~ll~~~~s~~~~~r~~A~~~L~~~~~~---~p~~~--~~~L~~il~~~~-~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
.+|..+.||+..+|+..-+-|+++.+- +|.-- +..|+....+.. ++-+|.++.++++.-+ +.++.+
T Consensus 27 plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~--------~Rl~~~ 98 (501)
T PF13001_consen 27 PLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF--------DRLDDE 98 (501)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh--------hcCCHH
Confidence 345556789999999999999876542 23210 356777776644 7999999999998876 446888
Q ss_pred HHHHHHHHHHHHHhh
Q 001855 100 TQSSLKSMLLQSIQL 114 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~ 114 (1004)
.+..+...+++++..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999874
No 169
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.017 Score=57.24 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhh
Q 001855 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEA 931 (1004)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 931 (1004)
.+|...-.....|..|+..+++.+.+.+..++..+++-+ ++....+-..|+.++++++...+..+...+..++..++..
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHK 178 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777778999999999999999999999999999988 4666777788999999999999999888888888888888
Q ss_pred cCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHH
Q 001855 932 CNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKIC 998 (1004)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~ 998 (1004)
-...+..||.-|-.+|..++.+... ..+++.|.+.+... ++.+|.+++.|+.+.+
T Consensus 179 a~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~------n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHS------NPRVRAKAALCFSRCV 233 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhh------chhhhhhhhccccccc
Confidence 8888999999999999999988654 34555555555443 5577777777665543
No 170
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.88 E-value=0.4 Score=52.21 Aligned_cols=241 Identities=15% Similarity=0.097 Sum_probs=146.6
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHH
Q 001855 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH 184 (1004)
Q Consensus 105 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 184 (1004)
...++..|..+.+..++..++..+. .. .-+..+..+...+.+.++.+|.++...|+.+-. +.
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~---~~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~ 117 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL---AQ-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQ 117 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh---cc-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hH
Confidence 3457777754456666664443332 11 112348888999999999999999999985433 45
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchH
Q 001855 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1004)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 264 (1004)
..+.+...+++. ++.||..++.++...-. . -.+.+...++++++.+|..++.+++.+.....
T Consensus 118 a~~~L~~~L~~~-~p~vR~aal~al~~r~~--------~--------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a- 179 (410)
T TIGR02270 118 AEPWLEPLLAAS-EPPGRAIGLAALGAHRH--------D--------PGPALEAALTHEDALVRAAALRALGELPRRLS- 179 (410)
T ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHhhcc--------C--------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc-
Confidence 556777788887 99999988876665111 1 11234445568899999999999998864221
Q ss_pred HHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCC
Q 001855 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1004)
Q Consensus 265 ~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1004)
.+.+. ..+ .+.++.+|..|+..+..+.. ....+.+.......
T Consensus 180 -----~~~L~----~al--~d~~~~VR~aA~~al~~lG~----------------~~A~~~l~~~~~~~----------- 221 (410)
T TIGR02270 180 -----ESTLR----LYL--RDSDPEVRFAALEAGLLAGS----------------RLAWGVCRRFQVLE----------- 221 (410)
T ss_pred -----hHHHH----HHH--cCCCHHHHHHHHHHHHHcCC----------------HhHHHHHHHHHhcc-----------
Confidence 11222 223 45789999999877755422 11112222211100
Q ss_pred CCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHH
Q 001855 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1004)
Q Consensus 345 ~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~ 424 (1004)
. .....+ ....++. .+.+ ..++.+.+.++++. +|.+++.++|.+... ..++.+.
T Consensus 222 ------g-~~~~~~--l~~~lal-~~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~ 275 (410)
T TIGR02270 222 ------G-GPHRQR--LLVLLAV-AGGP----DAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCL 275 (410)
T ss_pred ------C-ccHHHH--HHHHHHh-CCch----hHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHH
Confidence 0 011111 1111111 1322 45666777777755 899999999976542 3556677
Q ss_pred hhCCCCChhHHHHHHHHHHHhhh
Q 001855 425 NSFRDPHPRVRWAAINAIGQLST 447 (1004)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~ 447 (1004)
..+.|+. ++..|..+++.+..
T Consensus 276 ~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 276 EAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHhcCcH--HHHHHHHHHHHhhC
Confidence 7776654 99999999888764
No 171
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.88 E-value=0.011 Score=54.69 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-----CCChhHHHHHHHHHHHhhhh
Q 001855 375 VPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTD 448 (1004)
Q Consensus 375 ~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~ 448 (1004)
.|.+++.+...++. .+|..|..++.++|.+..--+.... .+..... +.+........ +...
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l-----~~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL-----PMMG 74 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH-----hhcc
Confidence 56677777777765 4699999999999988754332111 1111111 11112222211 1111
Q ss_pred hchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001855 449 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (1004)
Q Consensus 449 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~ 528 (1004)
..+..-+-|..-++..+++.|+|..-..-...++.++..+++..+... .+|++.+++.++..+.+.+...++..+.-++
T Consensus 75 ~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 75 ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111111335667788899999984444455678899999998887665 7999999999999999888889998888888
Q ss_pred HHHHH
Q 001855 529 SVADS 533 (1004)
Q Consensus 529 ~l~~~ 533 (1004)
.++..
T Consensus 154 ~lv~i 158 (160)
T PF11865_consen 154 DLVSI 158 (160)
T ss_pred HHHHH
Confidence 77654
No 172
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.86 E-value=0.016 Score=49.38 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=79.2
Q ss_pred cccCchHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHH
Q 001855 496 ILTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1004)
Q Consensus 496 ~l~~~~~~i~~~l~~~l~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~ 571 (1004)
.+.+++-.++..+-..+.+ .+...|..++.+++.+.+..++.+..+.++++..|...+.. .+++..+++|
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------~~l~~~al~~ 77 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------PELREEALSC 77 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------hhhHHHHHHH
Confidence 3455666677777666666 45668889999999999988888888888888888887743 2688889999
Q ss_pred HHHHHhhhChhhhhhhHHHHHHHHHHHh
Q 001855 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1004)
Q Consensus 572 l~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1004)
...+.+.++.+.+.|.+++++-.++..+
T Consensus 78 W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 78 WNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999998999999999988887754
No 173
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.74 E-value=0.025 Score=62.74 Aligned_cols=255 Identities=13% Similarity=0.127 Sum_probs=162.7
Q ss_pred hcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH
Q 001855 241 NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 320 (1004)
Q Consensus 241 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1004)
.-.+.+.+..-+..|...++..++.+.. ..+.+.++..+...+ ++-.++.-+.+.. ..-...+|-.
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~--~kvlp~Ll~~~~~g~-------a~~~~ltpl~k~~-----k~ld~~eyq~ 329 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIA--SKVLPILLAALEFGD-------AASDFLTPLFKLG-----KDLDEEEYQV 329 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhhccc-------cchhhhhHHHHhh-----hhcccccccc
Confidence 3456777777777777766666554432 244555554443222 1112222222210 0001234667
Q ss_pred HHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHH
Q 001855 321 RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIA 400 (1004)
Q Consensus 321 ~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~ 400 (1004)
.++|.+++++...+. ..|-...+-+.....++.++.+...++|.+...+.|.+...|+..+.+
T Consensus 330 ~i~p~l~kLF~~~Dr-----------------~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlks 392 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDR-----------------QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKS 392 (690)
T ss_pred chhhhHHHHhcCcch-----------------HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHH
Confidence 788888887664321 122223333444555565556677788999999999999999999999
Q ss_pred HHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHH
Q 001855 401 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1004)
Q Consensus 401 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~ 480 (1004)
+..++..+... ..-..++..+...-.|+++.+|.....|+++++.++.+..+ -..+..+....+.| +-..-|.+
T Consensus 393 m~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R---~~vL~~aftralkd-pf~paR~a 466 (690)
T KOG1243|consen 393 MAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR---KRVLASAFTRALKD-PFVPARKA 466 (690)
T ss_pred HHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh---ccccchhhhhhhcC-CCCCchhh
Confidence 99999877652 12245667777776799999999999999999988765431 12233334446788 66778888
Q ss_pred HHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 481 a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
+..++....+.+.. ...-..|++.+....-+++..+|..+..++........
T Consensus 467 ~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 467 GVLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhHHHhhcccccch---hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 88888887766653 24456677777777778888899888887766554433
No 174
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=2.1 Score=51.02 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=100.7
Q ss_pred HHHHHHHcCC---ChHHHHHHHHHhcCCChHH-----HHHHHHHHHHhhhcCchHHHHHHHHHH--ccCCCHHHHHHHHH
Q 001855 10 QSQLAVILGP---DSAPFETLISHLMSTSNEQ-----RSEAELLFNLCKQQDPDSLTLKLAHLL--QRSPHPEARAMAAV 79 (1004)
Q Consensus 10 ~~~~~~~~~~---d~~~l~~ll~~~~s~~~~~-----r~~A~~~L~~~~~~~p~~~~~~L~~il--~~~~~~~~r~~a~~ 79 (1004)
.++.+.+|.. +++-+..+++.+-++..+. -+..-.+|.++...-|.-.+..+...+ .++++-.+|..-..
T Consensus 255 ~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavle 334 (1251)
T KOG0414|consen 255 VADAVTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLE 334 (1251)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3444455444 2456667777776665443 333344566666644432222222222 13556666665555
Q ss_pred HHHHhcccCC-CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc-ccCCCCcchHHHHHHHhhcCCCh
Q 001855 80 LLRKLLTRDD-SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSV 157 (1004)
Q Consensus 80 ~L~~~i~~~~-~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~-~~~~~~~~~ll~~L~~~l~~~~~ 157 (1004)
++.+.+...- ...-...+.+.+..+.+.|.+.+.+ .++.+|..+-++...|... ..|.+.|.+++......+.+.+.
T Consensus 335 i~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~D-vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSs 413 (1251)
T KOG0414|consen 335 ICANLVASELRDEELEEMSKSLRDELLELLRERLLD-VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSS 413 (1251)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccH
Confidence 5555554320 0001112223333344455555655 7899999999999998863 45668999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhHh
Q 001855 158 KLQESAFLIFAQLSQYIG 175 (1004)
Q Consensus 158 ~~r~~al~~l~~l~~~~~ 175 (1004)
-+|..|+..+..+....|
T Consensus 414 lVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 414 LVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999998877643
No 175
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.70 E-value=0.14 Score=56.07 Aligned_cols=240 Identities=12% Similarity=0.129 Sum_probs=149.7
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch---HHHHHHHHHHc----cCCCHHHHHHHHHHHHHhcccCCCCc
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD---SLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFL 92 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~---~~~~~L~~il~----~~~~~~~r~~a~~~L~~~i~~~~~~~ 92 (1004)
|..-+.+++..+.|+|...|......|-.+....+. .+...+..++. ......-=.-...++..+++-.
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf---- 206 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF---- 206 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc----
Confidence 557788999999999999999999998775543332 12223333332 1222111122334566666542
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 001855 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1004)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~ 172 (1004)
=..+.++.+..+.+.++.+.+...-......+..++..++.++- ..-..++..|+..--..+..-...-+.-+..+++
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 23577889999999999888875556667889999998888653 2344455666655544555444556777888888
Q ss_pred hHh-hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH--HHhhcCcchHhHHHhhHHHHHHHHHHHHhcC-ChhHH
Q 001855 173 YIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF--IQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATA 248 (1004)
Q Consensus 173 ~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~ 248 (1004)
.++ ..+......++..+..+++++ +..|-..|+..+.+- +..+ .+.....+|.+.+.+....+.. +..+|
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li-----~~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLI-----SQNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHH-----HCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 765 456677888999999999998 999988887766432 2222 1112334455555544333221 56799
Q ss_pred HHHHHHHHHHHccchHHHHHhHH
Q 001855 249 QEALELLIELAGTEPRFLRRQLV 271 (1004)
Q Consensus 249 ~~a~~~L~~l~~~~~~~~~~~~~ 271 (1004)
..+..++..+.+..+..+.....
T Consensus 359 ~~a~~vl~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKLFDKCAQ 381 (409)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999998888877765433
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.69 E-value=0.15 Score=53.63 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=85.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh--
Q 001855 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (1004)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 457 (1004)
..+...+++++..+|..|+.++|-.+--..+....+ ++.+...+...+..||..|+.++..+....+.......
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEH----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 344577889999999999999998875544333333 44445555445899999999999999887765442222
Q ss_pred ------hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHH
Q 001855 458 ------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1004)
Q Consensus 458 ------~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~ 511 (1004)
...++..+.+.+.+ .++.++..|+.++..++-... +.+ -+.++..|+-.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~---i~~-~~~vL~~Lll~ 160 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR---ISD-PPKVLSRLLLL 160 (298)
T ss_pred cCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHHHHHH
Confidence 24678888888888 788999999999999875432 111 34555555443
No 177
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.65 E-value=0.026 Score=47.61 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=77.5
Q ss_pred cccCchHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHH
Q 001855 496 ILTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1004)
Q Consensus 496 ~l~~~~~~i~~~l~~~l~~~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~ 571 (1004)
.+.+++-.++..+-..+.+.. ..-|..++.+++.+++..|+.+..+.++++..|...+.. .++|..+++|
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~------~eL~~~al~~ 77 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI------PELRSLALRC 77 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHH
Confidence 345666667777777776654 345889999999999999988888989998888888743 3489999999
Q ss_pred HHHHHhhhChhhhhhhHHHHHHHHHHH
Q 001855 572 ISLVGMAVGKDKFRDDAKQVMEVLMSL 598 (1004)
Q Consensus 572 l~~l~~~~~~~~~~~~~~~i~~~l~~l 598 (1004)
...+.+.+..+...|.+++++-.++..
T Consensus 78 W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 78 WHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999999888888888888777663
No 178
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.57 E-value=1.3 Score=46.77 Aligned_cols=181 Identities=12% Similarity=0.133 Sum_probs=109.8
Q ss_pred chHhHHHHHHHHHHHHHhcccCC----------CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhH--hhhccccHH
Q 001855 116 SAKSISKKLCDTVSELASNILPE----------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI--GDTLTPHLK 183 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~----------~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~--~~~~~~~~~ 183 (1004)
-+-..|+.++.+++.+.+..... ..||+++..|.....+++... .+-.+|+.++++- ...+.. +
T Consensus 88 L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~e~l~~~iL~--~ 163 (335)
T PF08569_consen 88 LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKHESLAKIILY--S 163 (335)
T ss_dssp S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTSHHHHHHHHT--S
T ss_pred CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhhHHHHHHHhC--c
Confidence 34555666666666665543321 356888888888887665432 2223344433321 111100 1
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc-
Q 001855 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE- 262 (1004)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~- 262 (1004)
..+-.+.+..+.+ +-+|-..|+.++..++.... ....+.+...+..+......++.+++.-.|..++++|+++....
T Consensus 164 ~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~ 241 (335)
T PF08569_consen 164 ECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRS 241 (335)
T ss_dssp GGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchh
Confidence 1222244556676 88999999999988887532 11234455667777777778888899999999999999988533
Q ss_pred -hHHHHHhHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001855 263 -PRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 263 -~~~~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1004)
...+..|+. .-+..++.++ .+.+..++..|+.++..++.+
T Consensus 242 n~~vm~~yi~~~~nLkl~M~lL--~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 242 NFNVMTRYISSPENLKLMMNLL--RDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp GHHHHHHHTT-HHHHHHHHHHT--T-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCHHHHHHHHHHh--cCcchhhhHHHHHHHHHHHhC
Confidence 455555554 4455556666 445788999999999999885
No 179
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.017 Score=58.94 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHH--HHHHHHH
Q 001855 892 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRL 969 (1004)
Q Consensus 892 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~~l~~L 969 (1004)
.+.+.+.|..|+.-+..+++.+.....-.--..+..++..+++.++.+|..|++.+|.++.+.|. .+..+ ...++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~-~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPK-SQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcccHHHH
Confidence 46678889999999999999987654332233445555589999999999999999999999984 23332 3477788
Q ss_pred HHhhcCCCCCCchhhhhHHHHHHHHHHHHhhhhc
Q 001855 970 NVVIRHPNALQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 970 ~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
...++.. .+..+|-+|..|++.+|++++-
T Consensus 172 l~~ls~~-----~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 172 LKILSSD-----DPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred HHHHccC-----CCchHHHHHHHHHHHHHhcCcH
Confidence 8888643 3678999999999999999874
No 180
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.19 Score=55.52 Aligned_cols=220 Identities=12% Similarity=0.152 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc----chHhHHHHHHHHHHHHHhcccCCCCcch
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPE 143 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~----~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 143 (1004)
.+......++.++++- |...+-+.+++|-+-.++.+... +...+....-.+++.++..---.....+
T Consensus 99 l~ks~~~~~geI~frA---------Wkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVee 169 (1005)
T KOG1949|consen 99 LQKSLMVYIGEIYFRA---------WKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEE 169 (1005)
T ss_pred ccHHHHHHHhHHHHHH---------HHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4566777788888776 87766677777777777776542 2222333333445555432211122233
Q ss_pred -----HHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhc-----cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001855 144 -----LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1004)
Q Consensus 144 -----ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~ 213 (1004)
+-|.|.+.++..+.++|..|+.++-.+.-..+++. ...+..=+..+...|.|+ -+.||-.|+.-+..++
T Consensus 170 ml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 170 MLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 33667788888899999999988876655444432 112333344667788998 9999998888777766
Q ss_pred HhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHH
Q 001855 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL 293 (1004)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~ 293 (1004)
..+=.-.....+.+++..+.. +...+...++|...++.|..++.+.-. .+.+..+++.+-..+ .|..+.+|..
T Consensus 249 s~fWe~iP~~i~~~ll~kI~d---~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l--~D~se~VRvA 321 (1005)
T KOG1949|consen 249 SKFWEMIPPTILIDLLKKITD---ELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSL--HDNSEKVRVA 321 (1005)
T ss_pred HHHHHHcCHHHHHHHHHHHHH---HhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhh--hccchhHHHH
Confidence 543000011122222222222 222355668999999999988764321 122333333222222 3457889999
Q ss_pred HHHHHHHHHHh
Q 001855 294 AIEFVITLAEA 304 (1004)
Q Consensus 294 a~~~l~~l~~~ 304 (1004)
+.+++..+-.+
T Consensus 322 ~vd~ll~ik~v 332 (1005)
T KOG1949|consen 322 FVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHhh
Confidence 98888877554
No 181
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.45 E-value=1.2 Score=48.71 Aligned_cols=154 Identities=16% Similarity=0.074 Sum_probs=96.7
Q ss_pred CChHHHHHHHHHh-cCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001855 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1004)
Q Consensus 19 ~d~~~l~~ll~~~-~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~ 97 (1004)
..+..+..++..+ ..++.+++..|...|..... +. .+..|+..+. +.++.+|..++.-|..+- +
T Consensus 51 ~G~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~-~~~~L~~~L~-d~~~~vr~aaa~ALg~i~-----------~ 115 (410)
T TIGR02270 51 AGKAATELLVSALAEADEPGRVACAALALLAQED--AL-DLRSVLAVLQ-AGPEGLCAGIQAALGWLG-----------G 115 (410)
T ss_pred hhHhHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH-HHHHHHHHhc-CCCHHHHHHHHHHHhcCC-----------c
Confidence 3455666666666 34567777766666654433 33 2577777774 456778888887775421 1
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh
Q 001855 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1004)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1004)
+ .....|+..|.+ .++.+|..+..+++..- .+-.+.+...++++++.+|..++.+++.+...
T Consensus 116 ~----~a~~~L~~~L~~-~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---- 177 (410)
T TIGR02270 116 R----QAEPWLEPLLAA-SEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPRR---- 177 (410)
T ss_pred h----HHHHHHHHHhcC-CChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----
Confidence 1 122456677765 67888877665555411 11256677777788888888888888866542
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001855 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1004)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~ 212 (1004)
...+.+...+.+. ++.||..|+.++..+
T Consensus 178 ------~a~~~L~~al~d~-~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 ------LSESTLRLYLRDS-DPEVRFAALEAGLLA 205 (410)
T ss_pred ------cchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 2223344557776 888888888777554
No 182
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.077 Score=55.17 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=112.1
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccC
Q 001855 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1004)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~ 499 (1004)
+..++..+++-+..||..|+..+-.+...-+... ..++..+++.+...+.| .+..||......+..++....++.+.|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 3456667899999999999999999888744444 56778888888888888 888999999999999887776676899
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHh
Q 001855 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1004)
+..-+++.+...+....+.+|..++..+..++..+++.+..+...+++.+...+.
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887777776666666553
No 183
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.34 E-value=0.064 Score=45.76 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Q 001855 892 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG-SVVKPLVGEALSRLN 970 (1004)
Q Consensus 892 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~-~~~~~~~~~~l~~L~ 970 (1004)
...+..+|..++..++++++.++.++..+.++++.-+...+..+ +.|..|+.+-..+++... +.+.|.+++++-.+.
T Consensus 25 ~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 25 GKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 36778899999999999999888888888888877777777666 999999999999999876 467777887777777
Q ss_pred Hhh
Q 001855 971 VVI 973 (1004)
Q Consensus 971 ~~l 973 (1004)
+..
T Consensus 103 ~~~ 105 (107)
T PF08064_consen 103 PLW 105 (107)
T ss_pred Hhc
Confidence 654
No 184
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.34 E-value=0.066 Score=55.48 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=103.7
Q ss_pred HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH---H--hhhhhhhHHHHHhhcC--------CCCChhH
Q 001855 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---Q--NQFHPQVLPALAGAMD--------DFQNPRV 477 (1004)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~--~~~~~~ll~~l~~~l~--------~~~~~~v 477 (1004)
.+..+++-++|.++..+.|..+.+|..++.++..+...++... . ....+-+-+++..++. + +...+
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~-~s~~L 190 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPED-ESLEL 190 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCch-hhHHH
Confidence 5668889999999999999999999999999999998775443 1 2234444555555554 3 45667
Q ss_pred HHHHHHHHHHHhhcCCc---ccccCchHHHH-HHHHHHhhc----CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHH
Q 001855 478 QAHAASAVLNFSENCTP---EILTPYLDGIV-SKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1004)
Q Consensus 478 ~~~a~~~l~~l~~~~~~---~~l~~~~~~i~-~~l~~~l~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 549 (1004)
-..+..++..++..... ..-...+..++ +.+++.+.. +...++...+..+..++..+|.....|++.+++.+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 78888888888764311 11112232332 334443322 23778899999999999999999999999999999
Q ss_pred HHHHhhc
Q 001855 550 KAILVNA 556 (1004)
Q Consensus 550 ~~~l~~~ 556 (1004)
.+.+.++
T Consensus 271 ~~~l~np 277 (282)
T PF10521_consen 271 SQILENP 277 (282)
T ss_pred HHHhcCC
Confidence 9988664
No 185
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.29 E-value=0.4 Score=50.43 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc--
Q 001855 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-- 179 (1004)
Q Consensus 102 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~-- 179 (1004)
..+...++.++.+ .++.+|+.+..++|...-.+. ..-.+.++.+.+.++..+..++..|+.++..+....+....
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 3444555577877 688999999999999887543 35567788888888777889999999999988877653322
Q ss_pred -------ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001855 180 -------PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1004)
Q Consensus 180 -------~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1004)
.....+..++.+.+.+. ++++|..|++.+..++-.
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 13457888999999998 999999999999998865
No 186
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.099 Score=58.12 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=110.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001855 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1004)
.-+.+.+.+.+.++-.|+++.+.++.--.+.+. ...+..++. ..+|.+..||++|..+||-++-.-
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d------- 586 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD------- 586 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC-------
Confidence 345667777888999999998877654433322 122333333 368999999999999998765322
Q ss_pred hhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001855 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 457 ~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
+..+|..++.|.+.-|++||..+..+|+-.|.+.+. ...+..|-.+..++..-||..|+.+++.+.-...+
T Consensus 587 --p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 587 --PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred --hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 234566666776656899999999999999877663 23445555666788888999999999888766666
Q ss_pred hhHhhHhhhhHHHHHHHhh
Q 001855 537 HFQKYYDAVMPFLKAILVN 555 (1004)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~ 555 (1004)
...|-...+-..+.+.+.+
T Consensus 658 ~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 658 QLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred ccCchHHHHHHHHHHHhhh
Confidence 6666667777777777654
No 187
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.04 E-value=0.065 Score=45.26 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=73.2
Q ss_pred HHHHhHHHHHHHHHhhCCCCC--h--hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHH
Q 001855 411 VMVKNLEQVLSMVLNSFRDPH--P--RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1004)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~--~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~ 486 (1004)
++.+++=.++..+-..+.|.+ . .-|..+..+++.+.+..++.+ ..+.++++-.|...+.. ++.|..|+.++.
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W~ 79 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHHH
Confidence 445566666666666676665 2 348899999999999777666 66777777777777765 679999999999
Q ss_pred HHhhcCCcccccCchHHHHHHHHHH
Q 001855 487 NFSENCTPEILTPYLDGIVSKLLVL 511 (1004)
Q Consensus 487 ~l~~~~~~~~l~~~~~~i~~~l~~~ 511 (1004)
.++...+.+.+.+.++.++..+.+.
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 9999998777777777766666554
No 188
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=3.9 Score=46.03 Aligned_cols=220 Identities=13% Similarity=0.104 Sum_probs=129.4
Q ss_pred hhhHHHHHHHcCCC-h----HHHHHHHHHhc----CCCh--HHHHHHHHHHHHhhhcCch-HHHHH-HHHHHcc--CCCH
Q 001855 7 HLQQSQLAVILGPD-S----APFETLISHLM----STSN--EQRSEAELLFNLCKQQDPD-SLTLK-LAHLLQR--SPHP 71 (1004)
Q Consensus 7 ~~~~~~~~~~~~~d-~----~~l~~ll~~~~----s~~~--~~r~~A~~~L~~~~~~~p~-~~~~~-L~~il~~--~~~~ 71 (1004)
+|+-.-.++.+.|+ . +++..++.-++ .+.. .+.+-+..+...+.+.+++ .++.. +-+++.. +++.
T Consensus 20 gh~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk 99 (892)
T KOG2025|consen 20 GHYSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDK 99 (892)
T ss_pred chHHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcch
Confidence 45555667777775 3 34445555321 1221 2344445555555553332 23333 4455543 6788
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHh
Q 001855 72 EARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC 151 (1004)
Q Consensus 72 ~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~ 151 (1004)
.||.-...+|...... -..+++...+.+...++..+.+ ..+.||..+..+++.+=.. |.+.--+....+...
T Consensus 100 ~VRfrvlqila~l~d~-----~~eidd~vfn~l~e~l~~Rl~D-rep~VRiqAv~aLsrlQ~d--~~dee~~v~n~l~~l 171 (892)
T KOG2025|consen 100 KVRFRVLQILALLSDE-----NAEIDDDVFNKLNEKLLIRLKD-REPNVRIQAVLALSRLQGD--PKDEECPVVNLLKDL 171 (892)
T ss_pred hHHHHHHHHHHHHhcc-----ccccCHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhcC--CCCCcccHHHHHHHH
Confidence 9999999999888764 3678899999999999999997 7999999999999987542 223333455555555
Q ss_pred hc-CCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHH
Q 001855 152 VS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (1004)
Q Consensus 152 l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (1004)
++ ++++++|.+++..+..= +.-.|.++.-..|- +..+|+.+..-+..=+. + . ..-+.
T Consensus 172 iqnDpS~EVRRaaLsnI~vd------------nsTlp~IveRarDV-~~anRrlvY~r~lpkid-~-----r---~lsi~ 229 (892)
T KOG2025|consen 172 IQNDPSDEVRRAALSNISVD------------NSTLPCIVERARDV-SGANRRLVYERCLPKID-L-----R---SLSID 229 (892)
T ss_pred HhcCCcHHHHHHHHHhhccC------------cccchhHHHHhhhh-hHHHHHHHHHHhhhhhh-h-----h---hhhHH
Confidence 54 67899999998776521 22334444444554 55566544332221111 1 0 00112
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 001855 231 LMMRTLTESLNNGNEATAQEALELLI 256 (1004)
Q Consensus 231 ~~l~~l~~~l~~~~~~~~~~a~~~L~ 256 (1004)
..+..+...+.+.+.+++.++...+.
T Consensus 230 krv~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 230 KRVLLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 34445555566666666666655544
No 189
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=6.7 Score=48.62 Aligned_cols=175 Identities=9% Similarity=0.102 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhH
Q 001855 357 VGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRV 434 (1004)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~v 434 (1004)
.+..+.+.++....+....+.++..+.... .+.+|++|.+.+.-+..++-...- ......++|...+...+.|....|
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~v 1585 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEV 1585 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHH
Confidence 444455555544443566667777776433 356899999988777666543221 234556788888889999999999
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-CChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhh
Q 001855 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1004)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~ 513 (1004)
|..|..+|+.+...-.-. ..+..-.......... .+..-..+|..+|+.++-.++- .+..+++..+..+.....
T Consensus 1586 re~Aa~~Lsgl~~~s~~~----~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy-~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1586 REEAAKCLSGLLQGSKFQ----FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY-VVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred HHHHHHHHHHHHhccccc----cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc-cchhhhHHHHHHHHhhcC
Confidence 999999999887643211 1221222222222221 2233456788899999887763 344566666666655554
Q ss_pred cCChhHHHHHHHHHHHHHHHhHhh
Q 001855 514 NGKQMVQEGALTALASVADSSQEH 537 (1004)
Q Consensus 514 ~~~~~vr~~a~~~l~~l~~~~~~~ 537 (1004)
++ ..++.++-.+++..-+...+.
T Consensus 1661 e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1661 ES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred Cc-hHHHHHHHHHHHHHHHHhhhh
Confidence 44 456666666666665554443
No 190
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.92 E-value=3.3 Score=45.01 Aligned_cols=266 Identities=12% Similarity=0.062 Sum_probs=143.7
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchh-hHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHH
Q 001855 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQ-FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRL 365 (1004)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l 365 (1004)
+..+..+|+.++..+..+ |...+.++. +..-++...+..+..... ....+...+-.+
T Consensus 59 ~~~L~~qALkll~~~l~~----~~i~~~l~~d~~~~~i~~~i~~l~~~~~------------------~K~i~~~~l~~l 116 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH----PEIVSTLSDDFASFIIDHSIESLQNPNS------------------PKSICTHYLWCL 116 (372)
T ss_pred chHHHHHHHHHHHHHHcc----HHHHhhCChHHHHHHHHHHHHHHcCCCC------------------CHHHHHHHHHHH
Confidence 667888999999998874 433333333 333466666666544321 122222233333
Q ss_pred H-HhcCCC----cchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001855 366 A-IALGGN----TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1004)
Q Consensus 366 ~-~~~~~~----~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1004)
+ ..++++ .....++..+...-+ =+.-.+-...+.++..+....+..+..+...=++.++..+-+....+|..|.
T Consensus 117 s~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~ 196 (372)
T PF12231_consen 117 SDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAI 196 (372)
T ss_pred HcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 2 223322 122222222222211 1344566777888899999888888888777778888888788888998887
Q ss_pred HHHHHhhhhhchhHH-h--------------hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHH
Q 001855 440 NAIGQLSTDLGPDLQ-N--------------QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (1004)
Q Consensus 440 ~~l~~l~~~~~~~~~-~--------------~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i 504 (1004)
.++..+...+++... . .+.+.+.+.+.+.+.+..+.......-.++..++..-. -.--+++...
T Consensus 197 ~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-~~~w~~~n~w 275 (372)
T PF12231_consen 197 SLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-LDSWEHLNEW 275 (372)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-hhccHhHhHH
Confidence 777666665554210 0 11222333333333331111111222223333332111 1124678888
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhh---hHhhHhhhhHHHHHHHhhcCccc-chhhhHHHHHHHHHH
Q 001855 505 VSKLLVLLQNGKQMVQEGALTALASVADSSQEH---FQKYYDAVMPFLKAILVNATDKS-NRMLRAKSMECISLV 575 (1004)
Q Consensus 505 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~-~~~l~~~a~~~l~~l 575 (1004)
+.....+++++++.+|..|+.+-..++.....+ ..+.+.-++.++...++...... ...++..++.++..+
T Consensus 276 L~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 276 LKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence 888888999999999999999999998865432 12344444444444443322211 114455555544443
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.57 Score=54.58 Aligned_cols=232 Identities=16% Similarity=0.181 Sum_probs=137.8
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH--------HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCc
Q 001855 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS--------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFL 92 (1004)
Q Consensus 21 ~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~--------~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~ 92 (1004)
|+||--+|+-++| +-.|-+|...|..|..--|.. +-++.+.+|++ +-.++|..-.-+=.+++..+
T Consensus 471 PeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS-~a~ELrpiLVFIWAKILAvD---- 543 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS-SARELRPILVFIWAKILAVD---- 543 (1387)
T ss_pred hHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc-chHhhhhhHHHHHHHHHhcC----
Confidence 4666666666664 345666887777776633321 13566666643 34556554443333333322
Q ss_pred ccCCCHHHHHHHHHH----HHHHHhh--cchHhHHHHHHHHHHHHHhcccCCCC----cchHHHHHHHhhcCC-ChhHHH
Q 001855 93 WPRLSLHTQSSLKSM----LLQSIQL--ESAKSISKKLCDTVSELASNILPENG----WPELLPFMFQCVSSD-SVKLQE 161 (1004)
Q Consensus 93 w~~l~~~~~~~i~~~----ll~~l~~--~~~~~vr~~~~~~l~~i~~~~~~~~~----~~~ll~~L~~~l~~~-~~~~r~ 161 (1004)
+.=+.+.+|+. +++.|.. .-+++-|..++.+++.|++. ++.++ -.+++...+..+.++ .+-.|+
T Consensus 544 ----~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQ 618 (1387)
T KOG1517|consen 544 ----PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQ 618 (1387)
T ss_pred ----chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHH
Confidence 11133333331 2222322 12457899999999999986 55442 257888888888885 688999
Q ss_pred HHHHHHHHhhhhHhh-hccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH---------------hHH
Q 001855 162 SAFLIFAQLSQYIGD-TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR---------------DRF 225 (1004)
Q Consensus 162 ~al~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~---------------~~~ 225 (1004)
..+.+|+.+-+.+.. .+...-..-...+...|.|+ .++||.+|+-+|+.++....+..+. ...
T Consensus 619 W~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~ 697 (1387)
T KOG1517|consen 619 WLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSI 697 (1387)
T ss_pred HHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhH
Confidence 999999999887654 23333344455677778897 9999999999999999864221100 011
Q ss_pred HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHH
Q 001855 226 QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1004)
Q Consensus 226 ~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 265 (1004)
.++++.....+...+++..+-+|.+....|..++..+...
T Consensus 698 E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 698 EDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 2222222223444455566666666666666665544433
No 192
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.075 Score=56.96 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=114.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001855 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1004)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1004)
..+.+++.+.+.-.|+++.++++..--+.+. ..++..++.. .+|.+..||++|..+||-++-. +
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--D------- 583 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--D------- 583 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEec--C-------
Confidence 3566777888888999988887765444332 2344455554 6899999999999999877632 1
Q ss_pred hhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhh
Q 001855 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1004)
Q Consensus 459 ~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 538 (1004)
..+++..++.|.+.-|++||.....+|+-.|.+.+.. ..+..|-.++.+++.-||..|+.+++.+...+.+++
T Consensus 584 ~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 584 RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 2456666777776568899999999999998777632 234455566778888999999999999988888888
Q ss_pred HhhHhhhhHHHHHHHhh
Q 001855 539 QKYYDAVMPFLKAILVN 555 (1004)
Q Consensus 539 ~~~~~~i~~~l~~~l~~ 555 (1004)
.|-+..|...+...+.+
T Consensus 657 np~v~~I~k~f~~vI~~ 673 (926)
T COG5116 657 NPNVKRIIKKFNRVIVD 673 (926)
T ss_pred ChhHHHHHHHHHHHHhh
Confidence 88888888888877754
No 193
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.68 E-value=0.13 Score=47.68 Aligned_cols=72 Identities=8% Similarity=0.088 Sum_probs=59.1
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 001855 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1004)
Q Consensus 882 ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1004)
.+..++..+++.+-...+..++.++..+++..|....||+++++|.++..++..+...|..-+.-|+.++..
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345666667555556667788999999999988888999999999999999987778888888888888764
No 194
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.64 E-value=1.9 Score=45.65 Aligned_cols=102 Identities=12% Similarity=0.184 Sum_probs=77.6
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHH----HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhh
Q 001855 389 PEWQKHHAALIALAQIAEGCAKVM----VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQF 457 (1004)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~----~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~ 457 (1004)
.-+..|..-...+..+...|...+ ...+..++..+..++++++..|...++.++..+.+.+.. .+...|
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQY 211 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 358999999999999998876543 245778889999999999999999999999999887654 333556
Q ss_pred hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
+-.++..++..+.|..+...-..-+..|..++.
T Consensus 212 ~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 212 YLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 777788888888774555555556677777764
No 195
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=1.9 Score=53.50 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHH
Q 001855 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1004)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 265 (1004)
+..+++-+... ++..+..|+..+..++... +.+....++|.+...+..++.+++..+|.....++..+.......
T Consensus 43 l~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKR-DETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhcc-ChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 8899999999999988765 344445578888888888888999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001855 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1004)
Q Consensus 266 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l 301 (1004)
+.||+..+++..+... -|.+..+...|...+...
T Consensus 118 lsp~LK~li~~wl~~~--~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQ--FDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred hhHHHHhhhhhhhhee--cccchHHHHHHHHHHHhh
Confidence 9999999999776533 344555666665555444
No 196
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.53 E-value=0.6 Score=49.50 Aligned_cols=201 Identities=19% Similarity=0.192 Sum_probs=106.5
Q ss_pred CchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcccCCCCcccCC---CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHH
Q 001855 53 DPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPRL---SLHTQSSLKSMLLQSIQLESAKSISKKLCDTV 128 (1004)
Q Consensus 53 ~p~~~~~~L~~il~~~-~~~~~r~~a~~~L~~~i~~~~~~~w~~l---~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l 128 (1004)
+.+.+...++.++... .++.+.+....++..++..+. .....+ ........-..+++.+.+ ++..++..++.++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iL 129 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFIL 129 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 3444555666666554 789999999999999887752 111111 110011134567776665 6999999999999
Q ss_pred HHHHhcccCCCCcc---hHHHHHHHhhcC----CChhHHHHHHHHHHHhhhhHh--hhccccHHHHHHHHHHhh------
Q 001855 129 SELASNILPENGWP---ELLPFMFQCVSS----DSVKLQESAFLIFAQLSQYIG--DTLTPHLKHLHAVFLNCL------ 193 (1004)
Q Consensus 129 ~~i~~~~~~~~~~~---~ll~~L~~~l~~----~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l------ 193 (1004)
+.++..... ..-. +.++.+++.+.+ ++.+....++.++..+...-. ..+.. ...++.+...+
T Consensus 130 t~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 130 TSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----
T ss_pred HHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc
Confidence 999987543 2333 677888777765 334566888999988875421 12211 44445555555
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCcchHhHH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchH
Q 001855 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1004)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 264 (1004)
....+..+...++-|+..+.-. +. ....+ ...+|.+++.+.. ...+++.+-++.+|..+++..++
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLSF~--~~-~~~~~~~~~~i~~L~~i~~~---~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLSFE--PE-IAEELNKKYLIPLLADILKD---SIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ----HHHHHHHHHHHHHHHTTS--HH-HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSST
T ss_pred CCCCchhHHHHHHHHHHHHhcC--HH-HHHHHhccchHHHHHHHHHh---cccchHHHHHHHHHHHHHhccHH
Confidence 2222455556666665543321 11 11111 1245556555554 34678888899999999877664
No 197
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.51 E-value=4.7 Score=43.85 Aligned_cols=281 Identities=14% Similarity=0.145 Sum_probs=150.3
Q ss_pred ChhHHHHHHHHHHHhhhhh--chhHHhhhhhhhHHHHHhhcCCCC-ChhHHHHHHHHHHHHhhcCCcccccCchHHHHHH
Q 001855 431 HPRVRWAAINAIGQLSTDL--GPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 507 (1004)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~ll~~l~~~l~~~~-~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~ 507 (1004)
+.++...|+.+++.+.... ...+.......++...+..+.+.. ++.+....+++|.. ..+++..+.......+-.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH
Confidence 5677788899988876432 111112233346677777776522 33444555555544 455555444444443333
Q ss_pred HHHHhhc--CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhh
Q 001855 508 LLVLLQN--GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR 585 (1004)
Q Consensus 508 l~~~l~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~ 585 (1004)
.+..+.+ ++..+-...+.++..+....+..+....+.-+|.++..+-+ ....+|.+|+.+...+...+|++..
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~----~~k~ir~~a~~l~~~~~~~l~~~~~- 211 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLS----SAKDIRTKAISLLLEAKKCLGPNKE- 211 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHhChhHH-
Confidence 3344443 34556677888888888888777766666566665555433 2234666666666666666663321
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCC
Q 001855 586 DDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDD 665 (1004)
Q Consensus 586 ~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1004)
+...+....+... .+. .|...+.+.+.+.+..+.
T Consensus 212 -----~s~~~~~~~~~~~---------------------~~~--~~~~~~~~~L~~mi~~~~------------------ 245 (372)
T PF12231_consen 212 -----LSKSVLEDLQRSL---------------------ENG--KLIQLYCERLKEMIKSKD------------------ 245 (372)
T ss_pred -----HHHHHHHHhcccc---------------------ccc--cHHHHHHHHHHHHHhCcC------------------
Confidence 1111111111000 011 223333334444432110
Q ss_pred cccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhcc---cccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHH
Q 001855 666 DSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1004)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~~~~~~a~~~l~~l~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~ 742 (1004)
+ ...|.+.++.+..-++. .-.++++..+.....+++.. ++.+|..|..+-..++.
T Consensus 246 ~---------------------~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 246 E---------------------YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIY 303 (372)
T ss_pred C---------------------cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 0 02344556666555553 24467888888888888854 88999999999888877
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcH----HHHHHHHHHHHHHH
Q 001855 743 SAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT----EICASMLDSLNECI 796 (1004)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~----~~~~~~~~~l~~~~ 796 (1004)
... .+.....+.+..+..++...+..+... ++...++.+++.++
T Consensus 304 ~~~----------~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 304 ASN----------PNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred Hhc----------CCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 431 122223455555566666666554443 44555555554443
No 198
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.50 E-value=0.77 Score=50.46 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=141.1
Q ss_pred cH-HHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Q 001855 709 WI-DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 787 (1004)
Q Consensus 709 ~~-~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 787 (1004)
|+ .+++..++.+++. .++.-|......+..+.... ......+.+.+.. .+.+-+.+.....-...
T Consensus 129 ~i~~~fi~~Ll~l~~S-~D~rER~~lk~~l~~iy~k~----------~~~r~~Ir~~i~~---~~~~fi~e~~~~~gI~e 194 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDS-PDPRERDYLKTILHRIYGKF----------PNLRSFIRKSINN---IFYRFIYETERHNGIAE 194 (409)
T ss_dssp TS-HHHHHHHHHTTTS-STHHHHHHHHHHHHHHHHH-----------TTTHHHHHHHHHH---HHHHHHHTTS--STHHH
T ss_pred HcCHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHH---HHHHHhcCcccccCHHH
Confidence 44 4667778888874 47777877666666665543 1122333332222 22333333444455566
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 001855 788 MLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTL 867 (1004)
Q Consensus 788 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l 867 (1004)
+++.++.++..+...+.+++..-+...+.++.+...- ..-......|+..+
T Consensus 195 lLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~-----------------------------~~y~~~L~~~~~~f 245 (409)
T PF01603_consen 195 LLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHL-----------------------------SSYHQQLSYCVVQF 245 (409)
T ss_dssp HHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGG-----------------------------GGTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcH-----------------------------HHHHHHHHHHHHHH
Confidence 7788888877655456666666566666665443210 01122466777777
Q ss_pred HHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhh-hHHhhhHhHHHHHHhhcCCCChhHHHHHHHH
Q 001855 868 IKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCRE-AALKYYETYLPFLLEACNDENQDVRQAAVYG 946 (1004)
Q Consensus 868 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~ 946 (1004)
+...+.-..+ ++..+++.| ...+..--...+.-+.+++..+++ .+......++..+..++++++..|-..|++.
T Consensus 246 ~~kdp~l~~~----~i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~ 320 (409)
T PF01603_consen 246 LEKDPSLAEP----VIKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYF 320 (409)
T ss_dssp HHH-GGGHHH----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGG
T ss_pred HHhCchhHHH----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7776655443 334455666 333444445567788888887764 4566788889999999999999998888764
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhhhhc
Q 001855 947 LGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 947 lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
...=-. -..+..+...+++.+.+.|.....+-+ +..+|..|..++.-+....|+
T Consensus 321 w~n~~~--~~li~~~~~~i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 321 WNNEYF--LSLISQNSRVILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp GGSHHH--HHHHHCTHHHHHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHH
T ss_pred HCCHHH--HHHHHhChHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHH
Confidence 322111 123344556777777777765544444 667888888888887766553
No 199
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.43 E-value=0.12 Score=42.44 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=62.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhhhhc
Q 001855 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 924 l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
.+...++.++|+.+.||..|...|..+++... ......+.++.++...|+++ +..+.-||+.+++.++...|.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~------DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE------DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC------CchHHHHHHHHHHHHHHHChH
Confidence 45667788899999999999999999999876 23346799999999999887 679999999999999988774
No 200
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.39 E-value=0.33 Score=54.31 Aligned_cols=189 Identities=11% Similarity=0.096 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1004)
.+..+-..+++.+.. ++..+|-.+-+-+..++.+..+...-..++|++...+.+.++..|+-.+.++..++...+..
T Consensus 327 yq~~i~p~l~kLF~~-~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS-PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred cccchhhhHHHHhcC-cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 555666778888887 79999999888888888876554444678999999999999999999999998888876654
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
..-.+++..+...-.|. +..+|....-|++.+..+.. ...-.. .+...+...+.++-...|..+...+....
T Consensus 404 ~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~----~~~R~~---vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLA----ASVRKR---VLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred hhcHHHHHHHHhhCccc-cCcccccceeeecccccccc----hhhhcc---ccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 12345666666655565 78899888888888877652 111111 12223334566777778888888887666
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001855 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1004)
+.++. ......|++.+.... .+.+..+|..|...|..+..
T Consensus 476 ~~~~~--~~va~kIlp~l~pl~--vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFDQ--SEVANKILPSLVPLT--VDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccch--hhhhhhccccccccc--cCcccchhhHHHHHHHHHHh
Confidence 55542 222334444443322 34567788888877776654
No 201
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=95.31 E-value=6.7 Score=48.13 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=56.7
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHH--HHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhh
Q 001855 923 TYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 923 ~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~ 1000 (1004)
..+..++..|+.....|-.||..+||.|...++.. ++++ ...++.|.++|... +.++.+.+++|+-.++.+
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSK------hkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSK------HKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhh------hhhhhhhHHHHHHHHhcC
Confidence 45777888899999999999999999999988742 3333 23456677777543 679999999999999887
Q ss_pred hh
Q 001855 1001 FL 1002 (1004)
Q Consensus 1001 ~~ 1002 (1004)
.|
T Consensus 603 RP 604 (2195)
T KOG2122|consen 603 RP 604 (2195)
T ss_pred Cc
Confidence 75
No 202
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.27 E-value=2.7 Score=47.60 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHH
Q 001855 123 KLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVK 202 (1004)
Q Consensus 123 ~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr 202 (1004)
.+.+-+..|.++.-+++.-..++|.|...+.+.+....+.++..+..+.+.++..+ .-..++|.+.+.....++..|+
T Consensus 369 ~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vk 446 (700)
T KOG2137|consen 369 FILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVK 446 (700)
T ss_pred hHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHH
Confidence 33344444555433334556788888888888888999999999999999877443 2355677776654444588999
Q ss_pred HHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhh
Q 001855 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA 281 (1004)
Q Consensus 203 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~ 281 (1004)
..++-|+..++..+. .. ..++.++. +..+.+..++.+....+++...++-..+.-..-....+++.++.+.
T Consensus 447 vn~L~c~~~l~q~lD----~~---~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 447 VNVLPCLAGLIQRLD----KA---AVLDELLP-ILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHHHHHHHHHHHHHH----HH---HhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 999999999997762 22 22223333 3445556788888888888777664443311111234555554443
No 203
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.16 E-value=1.7 Score=47.34 Aligned_cols=166 Identities=15% Similarity=0.166 Sum_probs=102.8
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-------CChhHHHHHHHHHH
Q 001855 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-------QNPRVQAHAASAVL 486 (1004)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-------~~~~v~~~a~~~l~ 486 (1004)
-|+..|...+. ..++..|..|+.+|.. ..=+..++|.+...+.+. .+-..-...+....
T Consensus 207 lYy~~It~a~~----g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~r 272 (576)
T KOG2549|consen 207 LYYKEITEACT----GSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVR 272 (576)
T ss_pred HHHHHHHHHHh----cCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHH
Confidence 45555555544 3778899999887754 122455556655555431 23344455556666
Q ss_pred HHhhcCCcccccCchHHHHHHHHHHhhc----------CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc
Q 001855 487 NFSENCTPEILTPYLDGIVSKLLVLLQN----------GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1004)
Q Consensus 487 ~l~~~~~~~~l~~~~~~i~~~l~~~l~~----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1004)
+++++-. -.+.||+..+++.++.++-. ..+.+|.-+...+..++..++.........|...+.+.|.+.
T Consensus 273 SLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 273 SLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred HHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 6666544 45789999999999987632 246699999999999999888765566677888888887553
Q ss_pred CcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHH
Q 001855 557 TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1004)
Q Consensus 557 ~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 596 (1004)
. ......-.++.++..++.-.-+-.+.|.+......+.
T Consensus 352 ~--~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~ 389 (576)
T KOG2549|consen 352 K--KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQ 389 (576)
T ss_pred C--CCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhh
Confidence 2 2222333456666666543322334455555444433
No 204
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.11 E-value=0.25 Score=52.60 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=89.1
Q ss_pred HHHHHHHHcc-ccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcC--------
Q 001855 863 ILGTLIKTFK-AAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN-------- 933 (1004)
Q Consensus 863 ~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~-------- 933 (1004)
++..|..-.| ..+.|||-.++-.-....-+. +...-...++++..++.+-.-.+.+|+.+++|.++.++-
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 4445544444 345666665443222211011 333445567777788888777889999999999998872
Q ss_pred --CCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHH
Q 001855 934 --DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1004)
Q Consensus 934 --~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l 997 (1004)
+.++.+|..|+..|+.+++..+..+....+.+...|...+.++.. ...+.=.|+..++.+
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~----~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK----PLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC----CcchhhHHHHHHHHh
Confidence 234689999999999999999887777788889889988887753 334466666666655
No 205
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.09 E-value=6.4 Score=42.95 Aligned_cols=347 Identities=15% Similarity=0.110 Sum_probs=167.2
Q ss_pred HHcCCChHHHHHHHHHhcC--CChHHHHHHHHHHHHhhhcCc--------------hHHHHHHHHHHccCCCHHHHHHHH
Q 001855 15 VILGPDSAPFETLISHLMS--TSNEQRSEAELLFNLCKQQDP--------------DSLTLKLAHLLQRSPHPEARAMAA 78 (1004)
Q Consensus 15 ~~~~~d~~~l~~ll~~~~s--~~~~~r~~A~~~L~~~~~~~p--------------~~~~~~L~~il~~~~~~~~r~~a~ 78 (1004)
++...+..+...++-++.+ ++.++++-...-+.++-..+| +-+ ..++..+ +.++..+...|.
T Consensus 45 ~~~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~-~~fl~lL-~~~d~~i~~~a~ 122 (429)
T cd00256 45 EILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTW-EPFFNLL-NRQDQFIVHMSF 122 (429)
T ss_pred HHhcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccch-HHHHHHH-cCCchhHHHHHH
Confidence 3334444455555554433 344555555444444333233 222 2333444 456788899999
Q ss_pred HHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC-Cc-chHHHHHHHhhcCC-
Q 001855 79 VLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GW-PELLPFMFQCVSSD- 155 (1004)
Q Consensus 79 ~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~-~~-~~ll~~L~~~l~~~- 155 (1004)
.+|..++... -...+......+.+.+...+.+..+...+..+..++..+.+..--+. .| .+.++.|...++..
T Consensus 123 ~iLt~l~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~ 198 (429)
T cd00256 123 SILAKLACFG----LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT 198 (429)
T ss_pred HHHHHHHhcC----ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc
Confidence 9999988653 12223334444555566666543345556666778888766432211 22 23456666666542
Q ss_pred -ChhHHHHHHHHHHHhhhh--HhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcc-----hHhHHHh
Q 001855 156 -SVKLQESAFLIFAQLSQY--IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-----DRDRFQD 227 (1004)
Q Consensus 156 -~~~~r~~al~~l~~l~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~-----~~~~~~~ 227 (1004)
+.+....++.|+..+.=. ..+.+. -..+++.+.+.++.....+|-.-++.++.+++..-.+.. ....+..
T Consensus 199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~--~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~ 276 (429)
T cd00256 199 LGFQLQYQSIFCIWLLTFNPHAAEVLK--RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC 276 (429)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHHhhc--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc
Confidence 334445555555544211 112221 245777777777776566777788888888887431111 0111111
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccch---HHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001855 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1004)
-++.+++.+..- +=.|++. ...++.|....+... ..|+.|..++-...+.- +-.+.++ .||..=+.
T Consensus 277 ~l~~~l~~L~~r-k~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W-Sp~H~se-------~FW~EN~~- 345 (429)
T cd00256 277 KVLKTLQSLEQR-KYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW-SPVHKSE-------KFWRENAD- 345 (429)
T ss_pred ChHHHHHHHhcC-CCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC-CCCCCCc-------hHHHHHHH-
Confidence 223333333210 0024443 334444444433322 22444555444322211 1011111 23332111
Q ss_pred hhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcC-CCcchHH--HHHH
Q 001855 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG-GNTIVPV--ASEQ 381 (1004)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~--l~~~ 381 (1004)
++.+.--.++..+...+... +|+ .....|..=++.++.+.| ++.++.. .-..
T Consensus 346 ---------kf~~~~~~llk~L~~iL~~s-~d~---------------~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~ 400 (429)
T cd00256 346 ---------RLNEKNYELLKILIHLLETS-VDP---------------IILAVACHDIGEYVRHYPRGKDVVEQLGGKQR 400 (429)
T ss_pred ---------HHHhcchHHHHHHHHHHhcC-CCc---------------ceeehhhhhHHHHHHHCccHHHHHHHcCcHHH
Confidence 01011123444444444322 221 122334444566666654 1233222 2345
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHH
Q 001855 382 LPAYLAAPEWQKHHAALIALAQIA 405 (1004)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~ 405 (1004)
+++++++++..+|+.|+.|++.+.
T Consensus 401 vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 401 VMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 677889999999999999999875
No 206
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.08 E-value=2 Score=45.33 Aligned_cols=108 Identities=9% Similarity=0.174 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHH-HHhhcCcccchhhh-HHHHHHHHHHHhhhChhhhhhhHHHHHHHH
Q 001855 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNATDKSNRMLR-AKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1004)
Q Consensus 518 ~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~-~l~~~~~~~~~~l~-~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 595 (1004)
.+|..++..+...+....+. ......++|.+.. .+....+ .....| ..++.+++.+...+| +.+.++++.+++.+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~-~~p~~r~~evL~l~~~ii~kl~-~~~~~~v~~I~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQN-SVPDAREPEVLSLMATIINKLG-ELIQPQVPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHH-S-GGGS-HHHHHHHHHHHHHHG-GGCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhc-CCccccChhHHHHHHHHHHHHH-HhhhhhHHHHHHHH
Confidence 35667777777777655421 1123344444333 2222111 111222 347889999999988 56778888877766
Q ss_pred HH----HhcCCCCCCCchhhHHHHHHHHHHhHhccCc
Q 001855 596 MS----LQGSQMETDDPTTSYMLQAWARLCKCLGQDF 628 (1004)
Q Consensus 596 ~~----l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 628 (1004)
.. +...+++.....|......+..+...+-..+
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l 155 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPAL 155 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHH
Confidence 65 3444444433467777777888877664443
No 207
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.08 E-value=0.48 Score=49.18 Aligned_cols=146 Identities=12% Similarity=0.193 Sum_probs=98.9
Q ss_pred CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhc----c--ccHHHHHHHHHHhhc--------CCCChHHHHH
Q 001855 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL----T--PHLKHLHAVFLNCLT--------NSNNPDVKIA 204 (1004)
Q Consensus 139 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~----~--~~~~~l~~~l~~~l~--------~~~~~~vr~~ 204 (1004)
..|+-++|.++.++.+.++..|..|+.++..+.+..+... . ...+-+.+.+..++. ++ +..+-..
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ 193 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQA 193 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHH
Confidence 5899999999999999999999999999999999765432 1 123334445555554 33 6677788
Q ss_pred HHHHHHHHHHhhcCcch---HhHHHhhHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHh
Q 001855 205 ALNAVINFIQCLTSSAD---RDRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (1004)
Q Consensus 205 a~~~l~~~~~~~~~~~~---~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~ 280 (1004)
+..|+..++........ ...+.+.+. .+++.+......+.++.+...++.+..++...+.....|+..+++.+.+.
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 89999888775422111 111222211 13332222221225788888889999888888888889999999999888
Q ss_pred hcCCC
Q 001855 281 AEAES 285 (1004)
Q Consensus 281 ~~~~~ 285 (1004)
+.++.
T Consensus 274 l~npf 278 (282)
T PF10521_consen 274 LENPF 278 (282)
T ss_pred hcCCC
Confidence 76653
No 208
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.02 E-value=8.2 Score=43.97 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHH
Q 001855 317 QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHA 396 (1004)
Q Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a 396 (1004)
.|...++|.+...+...... ...-...+-++.|.+..+++.+...++|.+...+++.+..++..
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~----------------~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~ 408 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPK----------------QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQEL 408 (700)
T ss_pred hhhhhhhHHHHHHhccCCcc----------------cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHH
Confidence 46677788777766542111 01122334455667777778899999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCCh
Q 001855 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP 475 (1004)
Q Consensus 397 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 475 (1004)
++..+..+++..+.. -.-+.|+|.+.+. ++..+..|+..++.|++.+++.+... ..++.++ .+.++.+. .++
T Consensus 409 ~L~~lptv~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d~~l-pi~~~~~~-~dp 481 (700)
T KOG2137|consen 409 ALQILPTVAESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLDELL-PILKCIKT-RDP 481 (700)
T ss_pred HHHhhhHHHHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHHHHH-HHHHHhcC-CCc
Confidence 999999999887631 1223466766554 56788999999999999999766432 2344444 44555655 568
Q ss_pred hHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhc
Q 001855 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1004)
Q Consensus 476 ~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~ 514 (1004)
.+..........+.-..... ..-....+++.+..+...
T Consensus 482 ~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 482 AIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhc
Confidence 88777777777765433321 122344555655554433
No 209
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.92 E-value=1.3 Score=43.82 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=90.0
Q ss_pred HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-----CChhHHHHHHHHHH
Q 001855 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----QNPRVQAHAASAVL 486 (1004)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-----~~~~v~~~a~~~l~ 486 (1004)
+.-|++.++..+ +...+...|.+|+.++..= .-+.+++|..+..+++. ++..+-........
T Consensus 195 Lq~YF~kvisal---~dEs~~~~r~aAl~sLr~d----------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~ 261 (450)
T COG5095 195 LQMYFDKVISAL---LDESDEQTRDAALESLRND----------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYS 261 (450)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC----------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345566666655 4456788899998876541 22445555555444430 12333344445555
Q ss_pred HHhhcCCcccccCchHHHHHHHHHHhhc------CC----hhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc
Q 001855 487 NFSENCTPEILTPYLDGIVSKLLVLLQN------GK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1004)
Q Consensus 487 ~l~~~~~~~~l~~~~~~i~~~l~~~l~~------~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1004)
+++++-. -++.||+..+++.++.++-. ++ ..+|.-|...++.+...++......-+.+...+.+.+-..
T Consensus 262 sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 262 SLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred HHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhc
Confidence 5555544 45789999999988876522 11 3488889999999888888765555667777777666432
Q ss_pred CcccchhhhHHHHHHHHHHHh
Q 001855 557 TDKSNRMLRAKSMECISLVGM 577 (1004)
Q Consensus 557 ~~~~~~~l~~~a~~~l~~l~~ 577 (1004)
+... .-.-.|+.+++.+..
T Consensus 341 ~k~~--sT~YGalkgls~l~k 359 (450)
T COG5095 341 EKTE--STQYGALKGLSILSK 359 (450)
T ss_pred cccc--chhhhhhhhhhhhch
Confidence 2111 122346667766653
No 210
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.67 E-value=10 Score=43.20 Aligned_cols=175 Identities=13% Similarity=0.179 Sum_probs=109.3
Q ss_pred cchHHHHHHHHHHhcCCCcchHHHHHHHH--Hhhc-----CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC
Q 001855 355 YSVGQECLDRLAIALGGNTIVPVASEQLP--AYLA-----APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1004)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~~l~-----~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1004)
...|...|.++...+....++..++..+. ..-. -.++..|.--+..|.. ... -....+.++..+..++
T Consensus 254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~--Aa~~~~~~~~i~~~~l 328 (501)
T PF13001_consen 254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVI--AATSFPNILQIVFDGL 328 (501)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHH--HHhCCccHHHHHhccc
Confidence 34455666665544443344444444333 1000 1244555443333332 211 1235577788888888
Q ss_pred CCC--ChhHHHHHHHHH---HHhhhhhchhHHhhhhhhhHHHHHhhcC-------CCCChhHHHHHHHHHHHHhhcCCcc
Q 001855 428 RDP--HPRVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMD-------DFQNPRVQAHAASAVLNFSENCTPE 495 (1004)
Q Consensus 428 ~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~~~~ll~~l~~~l~-------~~~~~~v~~~a~~~l~~l~~~~~~~ 495 (1004)
..+ +.++|..+...+ ......+++......-+.++..+...++ ...+...|..+..+|+.++...+.-
T Consensus 329 ~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l 408 (501)
T PF13001_consen 329 YSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL 408 (501)
T ss_pred cCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccc
Confidence 777 789999999888 7777777665533333444444444442 1135678999999999999988732
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001855 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 496 ~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
+..- -.++..|+..++...+++|..+-+|++.++.++..
T Consensus 409 -~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 409 -FSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred -cccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 3222 45778888888888999999999999999988764
No 211
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.84 Score=47.79 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=100.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHh
Q 001855 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1004)
Q Consensus 144 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 223 (1004)
-+..|+..+...+.++|..|+.-+..+....+..+..+...+++-+.....|. +..||....+.+..++.... ..
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~----~e 133 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPAC----KE 133 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcc----hh
Confidence 35666667778899999999999999888866666667778888888888887 99999999999988877652 22
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHH
Q 001855 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML 278 (1004)
Q Consensus 224 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~ 278 (1004)
....+++.++..+..++..--+++|..++..|..++..++..+..+...+++...
T Consensus 134 ~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~ 188 (393)
T KOG2149|consen 134 DQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFK 188 (393)
T ss_pred hhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 2455667777777777777788999999999999999997766655444444333
No 212
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.54 E-value=8.4 Score=42.78 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH-HHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHH
Q 001855 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1004)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~-~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~ 510 (1004)
.+.|..|..+||.++..++.. -...++. .+..+|++ +...-|..++..+...+.........+..+.+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~----~~~~~~~~~L~~~L~S-~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES----SLQEIFQPLLLPYLNS-PSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 456889999999999887543 3444554 47778888 66667788888888888776533222223566666666
Q ss_pred Hhhc
Q 001855 511 LLQN 514 (1004)
Q Consensus 511 ~l~~ 514 (1004)
.+++
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 6663
No 213
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.42 E-value=11 Score=42.62 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001855 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1004)
+++..++.++.....+++-.+|+-.+..+..+.......-...++.+...+...+.|..|.||..|..+|+++-..-.+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 45555666666677788899999999999999884433223456777888889999999999999999999987533221
Q ss_pred HHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHH
Q 001855 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1004)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~ 486 (1004)
--.+...+...++..+++.||.+|+..+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 22455555555554488999998876654
No 214
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.41 E-value=11 Score=42.51 Aligned_cols=245 Identities=14% Similarity=0.064 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHHHHc----cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHH
Q 001855 37 EQRSEAELLFNLCKQQDPDSLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (1004)
Q Consensus 37 ~~r~~A~~~L~~~~~~~p~~~~~~L~~il~----~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l 112 (1004)
..|-+|.+.|.+.-+..|-.-+..+++... .+.++++|+.+..+|...++.. ... + ...|..+++.+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~----~~~-~----~~~R~~fF~~I 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ----DSS-S----GLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc----ccc-c----HHHHHHHHHHH
Confidence 345555555554333234222334443332 3667899999999999999875 111 1 24556677777
Q ss_pred hhcchHhHHHHHHHHHHHHHhcccCC-CCcchHHHHHHHhhcCC---------------------------ChhHHHHHH
Q 001855 113 QLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSD---------------------------SVKLQESAF 164 (1004)
Q Consensus 113 ~~~~~~~vr~~~~~~l~~i~~~~~~~-~~~~~ll~~L~~~l~~~---------------------------~~~~r~~al 164 (1004)
.....+..-..-..++..+....-.- ..-.++.|.|.+++..- +...-...+
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll 155 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLL 155 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHH
Confidence 65433333333444555555432111 22345566666555210 001111223
Q ss_pred HHHHHhhhhHhhhcc-ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC
Q 001855 165 LIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1004)
Q Consensus 165 ~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 243 (1004)
..+..+++.-...+. ..+..++..+........+...-..++..+..++.+-. -+ .+.++.++..|....+..
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~---iP---~~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD---IP---SESLSPCIEVLCSIVNSV 229 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc---CC---hHHHHHHHHHHhhHhccc
Confidence 333333333222222 24455555444443333345555688888888887521 01 234566777777765432
Q ss_pred ChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCC----CcchHHHHHHHHHHHHHHHh
Q 001855 244 NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE----SLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 244 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~vr~~a~~~l~~l~~~ 304 (1004)
+....+.+++..++..+.. ...+..++.++.+. ..+..+-+.|+.++..+.-.
T Consensus 230 --~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 230 --SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred --ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 5666777778777754421 23444455555211 12344556788888777653
No 215
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.38 E-value=0.15 Score=47.01 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=86.4
Q ss_pred chhhHHHHHHhHhhhhc-----------------CCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCCh
Q 001855 875 FLPFFDELSSYLTPMWG-----------------KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQ 937 (1004)
Q Consensus 875 ~~~~~~~ll~~l~~~l~-----------------~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 937 (1004)
+.|++..++|.+..-.. -|...+.|..|+.++..++..+...+. +..++..+..+|.| +.
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 34667777777776432 134577899999999999998776553 55668888999999 99
Q ss_pred hHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC------chhhhhHHHHHHHHHHH
Q 001855 938 DVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ------PENLMAYDNAVSALGKI 997 (1004)
Q Consensus 938 ~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~------~~~~~~~~na~~a~~~l 997 (1004)
+||.-+...+..++...|..+.+.+..+...|...|+..-... +...+....++.++..|
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888888886442221 24445555666666655
No 216
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.22 E-value=8.1 Score=40.20 Aligned_cols=163 Identities=16% Similarity=0.146 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCCh
Q 001855 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNP 199 (1004)
Q Consensus 120 vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 199 (1004)
.|+-.+.+-..+...+.. ..|.|++..|.++.+ ++. -........|+-..+...+.++|+-.-..
T Consensus 5 ~kky~~~v~k~L~~Fe~~-~EWAD~is~L~kL~k---------~lq-----~~~~~~~~IP~k~~v~krLaqCL~P~LPs 69 (307)
T PF04118_consen 5 YKKYNAEVEKALKSFESS-SEWADYISFLGKLLK---------ALQ-----NSNNQFPYIPHKLQVSKRLAQCLNPALPS 69 (307)
T ss_pred HHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHH---------HHh-----ccCCCCceeCcHHHHHHHHHHhcCCCCCh
Confidence 344333333344444443 699999888876542 111 00111122344456667788888765467
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHH
Q 001855 200 DVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQ 279 (1004)
Q Consensus 200 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~ 279 (1004)
.|...|+++...+++.+. .+.+..-++.+..-++..+......+|...+.++....-..+..+.+.++.++-.++.
T Consensus 70 GVH~KaLevY~~IF~~ig----~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLp 145 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIG----PDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLP 145 (307)
T ss_pred HHHHHHHHHHHHHHHhcC----HHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 899999999999999874 3333333444444444444333556777777777765544555677777777766666
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHH
Q 001855 280 IAEAESLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 280 ~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1004)
.++ ++..+....++.++..+..
T Consensus 146 GLe--de~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 146 GLE--DEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred ccc--cCCchHHHHHHHHHHHHHH
Confidence 553 2355566666666666665
No 217
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.20 E-value=32 Score=47.03 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHH
Q 001855 787 SMLDSLNECIQISGPL---LDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEI 863 (1004)
Q Consensus 787 ~~~~~l~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~ 863 (1004)
..+..+..++...|.+ .....+-++++.+.+.++....+.+. + ..-++
T Consensus 650 nYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s-------~----------------------~mkdL 700 (3550)
T KOG0889|consen 650 NYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHS-------Q----------------------GMKDL 700 (3550)
T ss_pred hHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCc-------c----------------------chHHH
Confidence 3566777788877764 22333344555555555554432111 1 24566
Q ss_pred HHHHHHHccc---cchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-----HHhhhHhHHHHHHhhcCCC
Q 001855 864 LGTLIKTFKA---AFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-----ALKYYETYLPFLLEACNDE 935 (1004)
Q Consensus 864 l~~l~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~-----~~~~~~~l~~~~~~~l~~~ 935 (1004)
.-++|-..|. .+.||+..++..+..+++ .+++.+..+++++.-++....++ +.|..+.++..+...+++.
T Consensus 701 fvELclTvPvRLS~Llpylp~LM~PLv~aLk--gs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~ 778 (3550)
T KOG0889|consen 701 FVELCLTLPVRLSSLLPYLPLLMKPLVFALK--GSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPV 778 (3550)
T ss_pred HHHHHHhhhHHHHHhhhhhhhhhhHHHHHhc--CCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCC
Confidence 6677777774 467898888888888884 55777888999998888776543 3456666677777777764
Q ss_pred -ChhHHHHHHHHHHHHHhhcc
Q 001855 936 -NQDVRQAAVYGLGVCAEFGG 955 (1004)
Q Consensus 936 -~~~vr~~a~~~lg~l~~~~~ 955 (1004)
+..+-..|++.||.+-.+..
T Consensus 779 ~~~s~s~~a~rILGKlgG~NR 799 (3550)
T KOG0889|consen 779 PNYSYSHRALRILGKLGGRNR 799 (3550)
T ss_pred CCchHHHHHHHHHHhhcCcch
Confidence 78888999999999876654
No 218
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.12 E-value=1.5 Score=40.61 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=75.9
Q ss_pred hhhhhhhHHHHHhhcCCC-----------------CChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001855 455 NQFHPQVLPALAGAMDDF-----------------QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1004)
Q Consensus 455 ~~~~~~ll~~l~~~l~~~-----------------~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~ 517 (1004)
.++++.++|.++..+.-. .--.+|..|..++..+++.+... + .+..+++.+...+.+ +.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~-~--~~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSR-I--DISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSS-S---HHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHh-C--CHHHHHHHHHhhcCC-cH
Confidence 356788888888655420 23468999999999999987633 3 366778888888988 88
Q ss_pred hHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001855 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1004)
Q Consensus 518 ~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1004)
.++.-+...+..++...+..+.+.++.+.+.+...++.
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999888888999999999998865
No 219
>PF05536 Neurochondrin: Neurochondrin
Probab=93.88 E-value=15 Score=42.10 Aligned_cols=238 Identities=14% Similarity=0.138 Sum_probs=131.5
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh---ccccHHHHH-HHHHHhhcC---C---CChHHHHHHHHHHHH
Q 001855 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT---LTPHLKHLH-AVFLNCLTN---S---NNPDVKIAALNAVIN 211 (1004)
Q Consensus 142 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~l~-~~l~~~l~~---~---~~~~vr~~a~~~l~~ 211 (1004)
++-+..+..++++.+...|-.|+..+..++...+.. -...++.+= +++...|.. + +....+..|+..|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 345677788888888888999999999998753321 001122221 122233332 1 134555567666666
Q ss_pred HHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhcCCCcchHH
Q 001855 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGT 290 (1004)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~v 290 (1004)
+.. .++......+...+|.+++.+.. ..+......++++|..++. +++-....+. ..++.+..++.+ .+..
T Consensus 84 f~~-~~~~a~~~~~~~~IP~Lle~l~~---~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~---~~~~ 155 (543)
T PF05536_consen 84 FCR-DPELASSPQMVSRIPLLLEILSS---SSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN---QSFQ 155 (543)
T ss_pred HcC-ChhhhcCHHHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh---Ccch
Confidence 655 22211234456667777776653 2234788999999999984 3332222221 334444444432 3455
Q ss_pred HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcC
Q 001855 291 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1004)
Q Consensus 291 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~ 370 (1004)
...|+..|..++... ....+......+..+++.+-..+....+ ..+.+.+..++..++
T Consensus 156 ~E~Al~lL~~Lls~~--~~~~~~~~~~~l~~il~~La~~fs~~~~--------------------~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 156 MEIALNLLLNLLSRL--GQKSWAEDSQLLHSILPSLARDFSSFHG--------------------EDKFELLEFLSAFLP 213 (543)
T ss_pred HHHHHHHHHHHHHhc--chhhhhhhHHHHHHHHHHHHHHHHhhcc--------------------chHHHHHHHHHHhcC
Confidence 777888888877642 1111222334455565555544432211 112333333333322
Q ss_pred C-----------CcchHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcH
Q 001855 371 G-----------NTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCA 409 (1004)
Q Consensus 371 ~-----------~~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~ 409 (1004)
. ......+...+...+++ .....|..++...+.+.+..+
T Consensus 214 ~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 214 RSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred cCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 23455667777777766 468899999999888887644
No 220
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.15 Score=47.58 Aligned_cols=91 Identities=15% Similarity=0.037 Sum_probs=75.0
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc---cch
Q 001855 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG---SVV 958 (1004)
Q Consensus 882 ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~---~~~ 958 (1004)
++|.+...+. .-....|-.|-..+.+++...|+.+.|.+++++..+-..|...|.+|...++..|.+++...+ .+.
T Consensus 115 yLp~F~dGL~-e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLA-ETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhh-hcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 5555555552 333445777788899999999999999999999999999999999999999999999987765 678
Q ss_pred HHHHHHHHHHHHHhh
Q 001855 959 KPLVGEALSRLNVVI 973 (1004)
Q Consensus 959 ~~~~~~~l~~L~~~l 973 (1004)
-|||.++|+.+...=
T Consensus 194 VPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 194 VPFYRQLLPVLNTFK 208 (262)
T ss_pred hhHHHHhhhhhhhhc
Confidence 899999999887653
No 221
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=0.71 Score=51.32 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=103.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001855 380 EQLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1004)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1004)
|.+-..++-+|..+|-.|+..+-.+..-- .+.+...++.-...+...|.|+.|.||..|..-+.++...+-.-+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 34445667788889988887776654321 1234455666677888899999999999887766665543322221
Q ss_pred hhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001855 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1004)
Q Consensus 455 ~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l 530 (1004)
...+..++..++.-+.......||.+....|..++.+-- -.+.++.+++.+-..+.+...+||.++...+..+
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 233556666666655432667899999999988875432 2477888889888899999999999888887665
No 222
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.80 E-value=2.5 Score=46.25 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=76.1
Q ss_pred HHHHHHhcccCCCCcccCCC--HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC--CCCcchHHHHHHHhhc
Q 001855 78 AVLLRKLLTRDDSFLWPRLS--LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPELLPFMFQCVS 153 (1004)
Q Consensus 78 ~~~L~~~i~~~~~~~w~~l~--~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~L~~~l~ 153 (1004)
..+|+.++... -+..+ .+..+.+...++.++.+ ++..||...+++++.+.....+ ...+..++..|..-+-
T Consensus 68 l~fl~~f~~Y~----~~~dpeg~~~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~ 142 (885)
T COG5218 68 LSFLKRFFEYD----MPDDPEGEELVAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF 142 (885)
T ss_pred HHHHHHHHHhc----CCCChhhhHHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 34566666543 22222 23444444555666665 8999999999999999875433 2234455666666666
Q ss_pred CCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 001855 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNA 208 (1004)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~ 208 (1004)
+..+.+|..|+.+|..+-+..++. -+.+..++...++++++.+||..|+--
T Consensus 143 DRE~~VR~eAv~~L~~~Qe~~~ne----en~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 143 DREKAVRREAVKVLCYYQEMELNE----ENRIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred cchHHHHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 777889999999998776543332 233344444444444489999988643
No 223
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.69 E-value=0.47 Score=50.57 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcC--C-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC---------
Q 001855 360 ECLDRLAIALGGNTIVPVASEQLPAYLAA--P-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF--------- 427 (1004)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l--------- 427 (1004)
.+|..|...-|-..++|.++.++.+.+.. . ++..-...+....++..+..-.+.+|+-.++|.++.++
T Consensus 197 ~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 197 EALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 34555544333234444444444443321 2 56655666666677776655566788888888888765
Q ss_pred -CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChh-HHHHHHHHHHHH
Q 001855 428 -RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNF 488 (1004)
Q Consensus 428 -~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~-v~~~a~~~l~~l 488 (1004)
.+.++.+|..|+..++.++..++... ....+.++..+.+.+.|...+. ..-.|+..|..+
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34678999999999999999887655 4456777777777777633332 356677666665
No 224
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.68 E-value=6.8 Score=38.70 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=32.9
Q ss_pred HHHHHhhCCC--CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 001855 420 LSMVLNSFRD--PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1004)
Q Consensus 420 ~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~ 489 (1004)
++.+...+.| ..|.||..|..+++.+.. +.+++.+-+..+| +...|+..+-.++..+-
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKD-PCKEVRETCELAIKRLE 128 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcC-CccccchHHHHHHHHHH
Confidence 4444444443 357777777777777651 2233444444455 66667766666666553
No 225
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.46 E-value=0.82 Score=37.57 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=66.4
Q ss_pred hHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHh
Q 001855 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (1004)
Q Consensus 461 ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 540 (1004)
.+...++.+.| +.+.+|..+...|..+++.-. ......+.++..++..++++++-|--.|+.++..++...++
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence 34566777888 889999999999999998776 23356788999999999999999999999999999988764
Q ss_pred hHhhhhHHHHHHH
Q 001855 541 YYDAVMPFLKAIL 553 (1004)
Q Consensus 541 ~~~~i~~~l~~~l 553 (1004)
.+++.|.+..
T Consensus 77 ---~vl~~L~~~y 86 (92)
T PF10363_consen 77 ---EVLPILLDEY 86 (92)
T ss_pred ---HHHHHHHHHH
Confidence 3445555544
No 226
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.38 E-value=2.2 Score=42.39 Aligned_cols=142 Identities=16% Similarity=0.209 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-----C-CC----ChhHHHHHHH
Q 001855 373 TIVPVASEQLPAYLAA--PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----R-DP----HPRVRWAAIN 440 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~-d~----~~~vr~~a~~ 440 (1004)
+++|.++.++.+.+.. .+-..-...+.....+..+..-+..+|+.+++|.++.++ . ++ +-.+|..|+.
T Consensus 230 QLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ 309 (450)
T COG5095 230 QLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAAD 309 (450)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 3444444444433321 244444555555666665554455678877777776653 2 22 3458999999
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-CChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcC
Q 001855 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG 515 (1004)
Q Consensus 441 ~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~ 515 (1004)
.++..+..++... ...-+.+...+++.+-|. .....+-.|+.++..+....-.-.+.|....-...+.+.+++.
T Consensus 310 ll~yV~~~F~~~Y-ktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~ 384 (450)
T COG5095 310 LLKYVFSNFSSSY-KTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKG 384 (450)
T ss_pred HHHHHHhhhhHhh-hhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhcc
Confidence 9999998887766 556677777877776551 2234566777777776544332333444443333333344443
No 227
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.33 E-value=16 Score=40.64 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHhhhhHhhhccccHHHHHH-HHHHhhcCCCChHHHHHHHHHHHHHHHhhc
Q 001855 157 VKLQESAFLIFAQLSQYIGDTLTPHLKHLHA-VFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1004)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~-~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~ 217 (1004)
...|..|..+||.++..++.. ....++. .+...|+++ +.--|..+.-.+..++....
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~-sa~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSP-SATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHhCc
Confidence 356888999999999987554 3444554 688888887 77778888888888887653
No 228
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.27 E-value=29 Score=43.51 Aligned_cols=294 Identities=16% Similarity=0.176 Sum_probs=157.8
Q ss_pred cchHhHHHHHHHHHHHHHhcccCCCCc-----chHHHHHHHhhc---CC-ChhHHHHHHHHHHHhhhhH------hhhcc
Q 001855 115 ESAKSISKKLCDTVSELASNILPENGW-----PELLPFMFQCVS---SD-SVKLQESAFLIFAQLSQYI------GDTLT 179 (1004)
Q Consensus 115 ~~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~L~~~l~---~~-~~~~r~~al~~l~~l~~~~------~~~~~ 179 (1004)
.++..||--.+-|++.|.+...|..-+ .+++..++..+. +. ++... .-..++..+.... .++-.
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~-r~~~lletl~~~k~~l~~~l~d~~ 139 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFK-RYFYLLETLAKVKFCLLMLLEDCQ 139 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchh-hHHHHHHHHHHhHHHheeeccchH
Confidence 488999999999999999988885433 344444444332 22 22111 1122222222221 11112
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
..+..++..|...+.++ .+.--..-...+..++... + ..-..++..++.-+-.+..+....|..+=..++
T Consensus 140 e~~~~~f~~f~d~~~~~-~~~~v~~~~~i~~~li~e~------d---~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li 209 (1266)
T KOG1525|consen 140 ELVHELFRTFFDLARKG-HPKKVFNMLDIAIMLITEE------D---TVQSELLDVLLENLVKPGRDTIKEADKLASDLI 209 (1266)
T ss_pred HHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhh------c---cchHHHHHHHHHHhccCCCCccHHHHHHHHHHH
Confidence 35667777777777665 3332223333333333322 1 111134455554444445666666666666666
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001855 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1004)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1004)
+..+..+.+.....+...+..- ......++....+.+..+-. ..++.+..++|.+...+....+
T Consensus 210 ~~~a~~~~~~i~~f~~~~~~~~--~s~~~~~~~~~he~i~~L~~----------~~p~ll~~vip~l~~eL~se~~---- 273 (1266)
T KOG1525|consen 210 ERCADNLEDTIANFLNSCLTEY--KSRQSSLKIKYHELILELWR----------IAPQLLLAVIPQLEFELLSEQE---- 273 (1266)
T ss_pred HHhhhhhchhHHHHHHHHHhhc--cccccchhhHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHhcchH----
Confidence 6666555554444443332211 11122233444444444433 2345677888888776653211
Q ss_pred cCCCCCCccccCCcccchHHHHHHHHHHhcCC--CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH-------
Q 001855 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------- 410 (1004)
Q Consensus 340 ~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------- 410 (1004)
..+.-|..+++.+....+. ....+.++..+...+.|....+|.+++.......-..+.
T Consensus 274 -------------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~ 340 (1266)
T KOG1525|consen 274 -------------EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTI 340 (1266)
T ss_pred -------------HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHH
Confidence 1233444444444322110 023455666666677788888888888766554322210
Q ss_pred ----------------------------HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001855 411 ----------------------------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1004)
Q Consensus 411 ----------------------------~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1004)
.-..+.+.++..+..++.|+.+.||..|...+.++.+.
T Consensus 341 ~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 341 LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 00123344778888899999999999999999998873
No 229
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.22 E-value=2.9 Score=45.63 Aligned_cols=151 Identities=16% Similarity=0.193 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcC--------CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC---
Q 001855 359 QECLDRLAIALGGNTIVPVASEQLPAYLAA--------PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF--- 427 (1004)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--------~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l--- 427 (1004)
.++|..|.. +.=+..++|+|..++.. .+...-...+.....+..+..-++.+|+-.++|.++.++
T Consensus 225 ~eAL~sL~T----DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk 300 (576)
T KOG2549|consen 225 QEALQSLET----DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSK 300 (576)
T ss_pred HHHHHhhcc----CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhh
Confidence 344555443 33355666666666653 233333333444444554444466788888888877763
Q ss_pred -------CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-CChhHHHHHHHHHHHHhhcCCcccccC
Q 001855 428 -------RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTP 499 (1004)
Q Consensus 428 -------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~l~~ 499 (1004)
.|.++.+|+-|+..+..++..++... ......+...+.+.+.|. ........++..|..|....-...+.|
T Consensus 301 ~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp 379 (576)
T KOG2549|consen 301 NLCLRPELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILP 379 (576)
T ss_pred hccCCccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheecc
Confidence 35689999999999999999988766 456678888888888773 234455667777777665433345567
Q ss_pred chHHHHHHHHHHhhc
Q 001855 500 YLDGIVSKLLVLLQN 514 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~ 514 (1004)
.+......+...+..
T Consensus 380 ~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 380 NLKEYNERLQSVLDV 394 (576)
T ss_pred chHHHHHHhhhhccc
Confidence 777666666555433
No 230
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.20 E-value=11 Score=43.30 Aligned_cols=109 Identities=21% Similarity=0.247 Sum_probs=65.7
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh--hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCc--cc
Q 001855 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF--HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EI 496 (1004)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~--~~ 496 (1004)
|-.+..|.+.++.++..|..-+..++-.- ..+ ..- --.=++.++..|.. ++.+|+..||++|.+++-.-.. +.
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~i-k~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKI-KSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhh-HHH-HHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccc
Confidence 33444555677777777766666554321 111 111 12335777888888 8999999999999999854332 11
Q ss_pred c-cCchHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHH
Q 001855 497 L-TPYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADS 533 (1004)
Q Consensus 497 l-~~~~~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~ 533 (1004)
+ .++.+.+ +.++.++. ..+.++|+.+...+-+|...
T Consensus 313 lai~~~~Gv-~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 313 LAIKELNGV-PTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhhcCCh-HHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 1 2344443 33334443 36778888888777776654
No 231
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.18 E-value=20 Score=41.39 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcHH---HHHHhH---HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 001855 388 APEWQKHHAALIALAQIAEGCAK---VMVKNL---EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1004)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~---~~~~~l---~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 461 (1004)
+.+...-+++.-+|..+..+... .+...+ +..+|.++..+..++..|..+++.+|..++...... ...-...
T Consensus 530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk--~ligk~a 607 (717)
T KOG1048|consen 530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK--ELIGKYA 607 (717)
T ss_pred hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh--hhhhcch
Confidence 45667777888888777665322 222222 456789999999999999999999999998765432 1233578
Q ss_pred HHHHHhhcCCCCC-----hhHHHHHHHHHHHHhh
Q 001855 462 LPALAGAMDDFQN-----PRVQAHAASAVLNFSE 490 (1004)
Q Consensus 462 l~~l~~~l~~~~~-----~~v~~~a~~~l~~l~~ 490 (1004)
|+.++.+|-+... .++...+|..|..++.
T Consensus 608 ~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~ 641 (717)
T KOG1048|consen 608 IPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR 641 (717)
T ss_pred HHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH
Confidence 8899998876332 4566778888888773
No 232
>PF05536 Neurochondrin: Neurochondrin
Probab=92.99 E-value=21 Score=41.02 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHhhhhHhhhc--cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHH--hhHHHH
Q 001855 157 VKLQESAFLIFAQLSQYIGDTL--TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ--DLLPLM 232 (1004)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~ 232 (1004)
...+..|+.+|..++. ++++ .+.+-.-+|.+...+....+..+...+++||..++..- + ....+. +-+|.+
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~--G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-E--GAKALLESGAVPAL 145 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-H--hHHHHHhcCCHHHH
Confidence 4667788889998887 3333 24567778888888887733488889999999998532 2 222222 234444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHccchHHH----HHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001855 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFL----RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1004)
.+.+. + .+.....++.+|..++....... ...+..+++.+-.... ......+...++++..+...
T Consensus 146 ~ei~~----~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs--~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 146 CEIIP----N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFS--SFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHH----h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHhcCc
Confidence 44433 3 55567778888887766544211 1223355555544442 23455677788888888774
No 233
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.79 E-value=2.9 Score=49.66 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHhhcHHH--------------HHHhHHHH
Q 001855 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAA----PEWQKHHAALIALAQIAEGCAKV--------------MVKNLEQV 419 (1004)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~----~~~~~r~aal~~l~~l~~~~~~~--------------~~~~l~~i 419 (1004)
+.+.+..+..... .--..++..+.+++++ .+...|.+|+.+++.++...... ...+.+.+
T Consensus 414 a~~~l~~l~~~~~--~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l 491 (618)
T PF01347_consen 414 AAQLLASLPFHVR--RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYL 491 (618)
T ss_dssp HHHHHHHHHHT-------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHH
T ss_pred HHHHHHHHHhhcC--CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHH
Confidence 3445555554431 1123344444444443 45779999999999998753321 11234444
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC--CChhHHHHHHHHHHHHhhcCCcccc
Q 001855 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF--QNPRVQAHAASAVLNFSENCTPEIL 497 (1004)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~~v~~~a~~~l~~l~~~~~~~~l 497 (1004)
...+.......+...+..++.+||.+.. +..++.+...+.+. ....+|..|+++|..+...++
T Consensus 492 ~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---- 556 (618)
T PF01347_consen 492 EQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---- 556 (618)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----
T ss_pred HHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----
Confidence 4555545556677788888999988752 34566666666551 357899999999987744333
Q ss_pred cCchHHHHHHHHHHhhcC--ChhHHHHHHHHHHH
Q 001855 498 TPYLDGIVSKLLVLLQNG--KQMVQEGALTALAS 529 (1004)
Q Consensus 498 ~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~l~~ 529 (1004)
..+.+.+++.+.+. +.++|.+|+..+-.
T Consensus 557 ----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 557 ----EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp ----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 34556666666554 46788877765443
No 234
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.63 E-value=3.8 Score=42.60 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=116.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHh-h-cHHHHHHhHHHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHh
Q 001855 379 SEQLPAYLAAPEWQKHHAALIALAQIAE-G-CAKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQN 455 (1004)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~-~-~~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1004)
-..+..+-...+|..-.+++.-+..... . ......++-..+...+.++|+-. -..|...|+.+...+.+.+++.-..
T Consensus 13 ~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~ 92 (307)
T PF04118_consen 13 EKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLA 92 (307)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3334444445678777776666655554 1 11111223334556777777654 4568889999999999988876656
Q ss_pred hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
..+.-..+.++..+.. ....||..-...+....-..++ .+.|.++.++..++..+++.+.++.+.+...+..+...++
T Consensus 93 ~dl~i~~~GLfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 93 QDLPIYSPGLFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred hhcHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 7777777888887776 6678888888888888877776 6889999999999999999898999999999999998887
Q ss_pred hh
Q 001855 536 EH 537 (1004)
Q Consensus 536 ~~ 537 (1004)
..
T Consensus 171 ~~ 172 (307)
T PF04118_consen 171 DK 172 (307)
T ss_pred hh
Confidence 65
No 235
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.50 E-value=18 Score=39.17 Aligned_cols=235 Identities=16% Similarity=0.169 Sum_probs=131.0
Q ss_pred CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh--hc-cccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHH
Q 001855 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TL-TPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1004)
Q Consensus 139 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~--~~-~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~ 214 (1004)
-.|..+.+.++..+-+++..+|.+|+++++.++..... .+ .-+++. ++...|..+ .+..=|..|++.+..++.
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 36777888888765556689999999999988875332 11 112222 233344333 345667899999999998
Q ss_pred hhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHH--hHHHHHHHHHHhhcCCCcchHHHH
Q 001855 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRH 292 (1004)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~vr~ 292 (1004)
...+ .+. +-..+++.+....++++...|..|++.|.+++-..|+.+.. -+..+++.+.. + .-++..
T Consensus 98 ~~~~---~~~---~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~--~~~~~~ 165 (371)
T PF14664_consen 98 IKKG---PKE---IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----G--SFSISE 165 (371)
T ss_pred hcCC---ccc---CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----c--cHhHHH
Confidence 6321 111 12257777887777788889999999999999888876543 23344444432 1 122455
Q ss_pred HHHHHHHHHHHhhhccchhhhcc--hhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcC
Q 001855 293 LAIEFVITLAEARERAPGMMRKL--PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1004)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~ 370 (1004)
..+..+..+... |...+.+ ...++.++..+... .. + ...++ .+...+..+..++..+-..-+
T Consensus 166 ~l~~~lL~lLd~----p~tR~yl~~~~dL~~l~apftd~----~~---~---~~~~~--~~~~~l~~s~~ai~~~LrsW~ 229 (371)
T PF14664_consen 166 SLLDTLLYLLDS----PRTRKYLRPGFDLESLLAPFTDF----HY---R---KIKDD--RELERLQASAKAISTLLRSWP 229 (371)
T ss_pred HHHHHHHHHhCC----cchhhhhcCCccHHHHHHhhhhh----hc---c---ccccc--hHHHHHHHHHHHHHHHHhcCC
Confidence 555666666653 3221111 11233444333221 00 0 00000 001133444445544443322
Q ss_pred C------CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 001855 371 G------NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE 406 (1004)
Q Consensus 371 ~------~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~ 406 (1004)
+ +.. ..+..+...+.-++...|.+.+..+-.+..
T Consensus 230 GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 230 GLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred ceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1 111 234455566677888888888877777654
No 236
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.42 E-value=5.8 Score=38.55 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=115.3
Q ss_pred CcccchhhhHHHHHHH----cCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH---------HHHHHHH-HHc
Q 001855 1 MAAESTHLQQSQLAVI----LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS---------LTLKLAH-LLQ 66 (1004)
Q Consensus 1 ~~~~~~~~~~~~~~~~----~~~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~---------~~~~L~~-il~ 66 (1004)
||.-|.|....+...- .+.+.+.+.+++..+-+ ++.|.+|..+|-+-.++.|+- ....|++ ++.
T Consensus 1 M~~~p~p~~s~~~~~~~p~~~~~~~dk~~~~i~~l~~--~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEiva 78 (293)
T KOG3036|consen 1 MANLPSPAMSKQQQTPSPGSNASNNDKAYQLILSLVS--PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVA 78 (293)
T ss_pred CCCCCCCccchhccCCCCCcccccccchhhHHHHhhC--CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHh
Confidence 7777776665554431 11234557777777664 477888888886655433321 1223332 221
Q ss_pred -----c----CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHH----HHHHHHh----hcchHhHHHHHHHHHH
Q 001855 67 -----R----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKS----MLLQSIQ----LESAKSISKKLCDTVS 129 (1004)
Q Consensus 67 -----~----~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~----~ll~~l~----~~~~~~vr~~~~~~l~ 129 (1004)
+ +....-|---+..|-+.+..| ++.-+.+++. -+...|. +.+...+|-.+-.+|+
T Consensus 79 iYp~l~p~~l~~~qsnRVcnaL~LlQcvASH--------pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIg 150 (293)
T KOG3036|consen 79 IYPSLSPPTLTPAQSNRVCNALALLQCVASH--------PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIG 150 (293)
T ss_pred cccccCCCCCCccccchHHHHHHHHHHHhcC--------cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHH
Confidence 0 223344555555555665554 1111111211 1222222 2256678888888999
Q ss_pred HHHhcccCC----CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhH-h--------hhccccHHHHHH-HHHHhhcC
Q 001855 130 ELASNILPE----NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-G--------DTLTPHLKHLHA-VFLNCLTN 195 (1004)
Q Consensus 130 ~i~~~~~~~----~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~-~--------~~~~~~~~~l~~-~l~~~l~~ 195 (1004)
.+++.+-.. -.|.+++|.+...+..++...+..|..+++.|.-.. + +.|. .+..++. ++.+..+.
T Consensus 151 aLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~-av~~~L~kmv~~l~~~ 229 (293)
T KOG3036|consen 151 ALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS-AVALVLGKMVFQLVSM 229 (293)
T ss_pred HHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH-HHHHHHHHHHHHHhcC
Confidence 998865331 167889999999999998888888998888776431 1 1222 2333333 44445555
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 001855 196 SNNPDVKIAALNAVINFIQ 214 (1004)
Q Consensus 196 ~~~~~vr~~a~~~l~~~~~ 214 (1004)
+ +..+-+.+++|...+..
T Consensus 230 p-s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 230 P-SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred C-CHHHHHHHHHHHHHhcC
Confidence 5 77777788888776654
No 237
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=28 Score=40.74 Aligned_cols=377 Identities=14% Similarity=0.116 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcC-cccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001855 519 VQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1004)
Q Consensus 519 vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1004)
.|...-..+...-...|+.+. +-+...+-+.+.... +++.+..-+.++-++..++..+| +...+.++..++....
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll---~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLL---DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhccc
Confidence 444444555555555554322 223333333343322 44455555667777888888887 4556666666666555
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHHHcccCCCccccCCCCCcccccCCCcccchhhcCCce
Q 001855 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1004)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1004)
..-+.+ +-.+...+...++..+.-+++.- -|++..+|.|++.+...
T Consensus 516 ik~S~~--n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh~s------------------------------- 561 (982)
T KOG2022|consen 516 IKLSAP--NPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLHNS------------------------------- 561 (982)
T ss_pred cccccC--ChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHhcCc-------------------------------
Confidence 433222 12244555666777766666542 24555666777776321
Q ss_pred eeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCcc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCC
Q 001855 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGR 756 (1004)
Q Consensus 678 ~~v~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 756 (1004)
++-+.+...+..+++.++.++.||..+++..+-..+... ..++.|.....++|.++.... ...
T Consensus 562 --------k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~--------pEe 625 (982)
T KOG2022|consen 562 --------KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK--------PEE 625 (982)
T ss_pred --------hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc--------HHh
Confidence 011346667999999999999999999998876665532 356889999999999988752 011
Q ss_pred CHHHHHHHHHHHHHHHHHHHccC-CcHHHHHH---HHHHHHHHHHHhCC---CC------------CHHHHHHHHHHHHH
Q 001855 757 NESYVKQLSDFIIPALVEALHKE-PDTEICAS---MLDSLNECIQISGP---LL------------DEGQVRSIVDEIKQ 817 (1004)
Q Consensus 757 ~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~---~~------------~~~~~~~~~~~l~~ 817 (1004)
-+.++-++++.++..+-..+..+ ++++.+.. .+.++..+...... .. ....+-.+...+.+
T Consensus 626 ~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~ 705 (982)
T KOG2022|consen 626 IPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIP 705 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHH
Confidence 23444445555554444443322 22222221 23444444443211 00 00012234444455
Q ss_pred HHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccc-hhhHHHHHHhHhhhhcCCCCH
Q 001855 818 VITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF-LPFFDELSSYLTPMWGKDKTA 896 (1004)
Q Consensus 818 ~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~ 896 (1004)
++.+..+. +.+ ...+.+.++..+..=.+..++.| .|.+..+.+.+..+.. .+-
T Consensus 706 ~~~kv~s~------~~~------------------~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~-~~~- 759 (982)
T KOG2022|consen 706 VFEKVLSM------WLG------------------LSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT-SCL- 759 (982)
T ss_pred HHHHHHHH------Hhc------------------chhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc-chH-
Confidence 55443320 111 11233334444444455556667 6778888888887542 111
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhHh----HHHHHHhhcC----CCChhHHHHHHHHHHHHHhhcccchHH---HHH-H
Q 001855 897 EERRIAICIFDDVAEQCREAALKYYET----YLPFLLEACN----DENQDVRQAAVYGLGVCAEFGGSVVKP---LVG-E 964 (1004)
Q Consensus 897 ~~r~~al~~l~~l~~~~~~~~~~~~~~----l~~~~~~~l~----~~~~~vr~~a~~~lg~l~~~~~~~~~~---~~~-~ 964 (1004)
... ..+..-.-+++...+...|.+++ .+..-+..+. ..++++-..-..++..+.+..|...-+ .+. -
T Consensus 760 a~t-l~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~ 838 (982)
T KOG2022|consen 760 AVT-LSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSL 838 (982)
T ss_pred HHH-HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHH
Confidence 111 01111111111111222222222 2222222222 245666677777889999988865433 333 3
Q ss_pred HHHHHHHhhcCC
Q 001855 965 ALSRLNVVIRHP 976 (1004)
Q Consensus 965 ~l~~L~~~l~~~ 976 (1004)
+++.-...|..|
T Consensus 839 i~~~a~~ll~~p 850 (982)
T KOG2022|consen 839 ILICAFILLNSP 850 (982)
T ss_pred HHHHHHHhcCCC
Confidence 444666777665
No 238
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.19 E-value=7.3 Score=45.68 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=79.4
Q ss_pred HHHHHHHhhcC----CChhHHHHHHHHHHHHHhh-cHH-------HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001855 378 ASEQLPAYLAA----PEWQKHHAALIALAQIAEG-CAK-------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1004)
Q Consensus 378 l~~~l~~~l~~----~~~~~r~aal~~l~~l~~~-~~~-------~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1004)
++..+.+++.+ ++...|.+|+.+++.++.. |.. ....+++.+...+-.+....+...+..++.+||.+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 44444455543 4678999999999999873 321 11233334444444444555666678888888887
Q ss_pred hhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHH
Q 001855 446 STDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGA 523 (1004)
Q Consensus 446 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~--~~~vr~~a 523 (1004)
.... -+..+.+.+. .-.. ....+|..|+.+|..+....+. .+.+.+++.+.+. ++++|..|
T Consensus 474 g~~~-------~i~~l~~~l~-~~~~-~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GHPS-------SIKVLEPYLE-GAEP-LSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CChh-------HHHHHHHhcC-CCCC-CCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHH
Confidence 6421 1122222222 1122 4568999999999998776652 2334455555443 46788877
Q ss_pred HHHHHH
Q 001855 524 LTALAS 529 (1004)
Q Consensus 524 ~~~l~~ 529 (1004)
+..+-.
T Consensus 537 ~~~lm~ 542 (574)
T smart00638 537 VLVLME 542 (574)
T ss_pred HHHHHh
Confidence 765543
No 239
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.82 E-value=11 Score=44.69 Aligned_cols=211 Identities=12% Similarity=0.114 Sum_probs=102.6
Q ss_pred HHHHcCCChHHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCC
Q 001855 13 LAVILGPDSAPFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDS 90 (1004)
Q Consensus 13 ~~~~~~~d~~~l~~ll~~~~s~--~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~ 90 (1004)
+..+-.|+.++|.++...+... ....|+.=...|-.... ++. +..+.+.+.+..-+..+ |..+|..+...
T Consensus 353 v~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT--~~a-v~~i~~~I~~~~~~~~e--a~~~l~~l~~~--- 424 (618)
T PF01347_consen 353 VRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGT--NPA-VKFIKDLIKSKKLTDDE--AAQLLASLPFH--- 424 (618)
T ss_dssp HHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-S--HHH-HHHHHHHHHTT-S-HHH--HHHHHHHHHHT---
T ss_pred HHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC--HHH-HHHHHHHHHcCCCCHHH--HHHHHHHHHhh---
Confidence 3444556777777777776654 22333333333333333 222 35556666543222222 22222222111
Q ss_pred CcccCCCHHHHHHHHHHHHHHHhh---cchHhHHHHHHHHHHHHHhcccCC------------CCcchHHHHHHHhh---
Q 001855 91 FLWPRLSLHTQSSLKSMLLQSIQL---ESAKSISKKLCDTVSELASNILPE------------NGWPELLPFMFQCV--- 152 (1004)
Q Consensus 91 ~~w~~l~~~~~~~i~~~ll~~l~~---~~~~~vr~~~~~~l~~i~~~~~~~------------~~~~~ll~~L~~~l--- 152 (1004)
-..-+.+..+ .+...+.. ...+.++..+...++.++...... ..-..+++.+...+
T Consensus 425 --~~~Pt~e~l~----~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 498 (618)
T PF01347_consen 425 --VRRPTEELLK----ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEA 498 (618)
T ss_dssp -------HHHHH----HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHH
T ss_pred --cCCCCHHHHH----HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHH
Confidence 0011233333 23333332 145678898998999888754332 12234555555444
Q ss_pred -cCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH
Q 001855 153 -SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1004)
Q Consensus 153 -~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 229 (1004)
...+...+..++++||.+.. +..++.+...+.+. ....+|..|+.+|..+.... +... .
T Consensus 499 ~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-----~~~v---~ 560 (618)
T PF01347_consen 499 VSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-----PEKV---R 560 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------HHHH---H
T ss_pred hhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-----cHHH---H
Confidence 34566778888999986643 12333444444433 36899999999998775543 2212 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001855 230 PLMMRTLTESLNNGNEATAQEALELLIE 257 (1004)
Q Consensus 230 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~ 257 (1004)
+.+++.+.. ...+.++|..|+..|..
T Consensus 561 ~~l~~I~~n--~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 561 EILLPIFMN--TTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHH---TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCChhHHHHHHHHHHh
Confidence 234444332 13477899999877664
No 240
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=45 Score=41.98 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChh
Q 001855 859 QVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQD 938 (1004)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 938 (1004)
-+..|++......++++.|+..++ +... .+++...|..|++.+..++...|+.+.+.+++++|.+.+.+.|.+..
T Consensus 1523 ~li~~i~~~~~a~~~d~~pl~~k~----l~~t-rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~ 1597 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDDLKPLNQKI----LKKT-RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDE 1597 (1621)
T ss_pred HHHHHHHhhccCChhhhHHHHHHH----HHHh-ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHH
Confidence 345555555555555555544443 3333 46677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHH
Q 001855 939 VRQAAVYGLGVCAEFGGSVVKPL 961 (1004)
Q Consensus 939 vr~~a~~~lg~l~~~~~~~~~~~ 961 (1004)
|...+...+.++=...|+.++.|
T Consensus 1598 Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1598 VECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHHhchhhhhc
Confidence 99999887777777777755444
No 241
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=0.71 Score=43.28 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=75.2
Q ss_pred hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH---h
Q 001855 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 534 (1004)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~---~ 534 (1004)
+...+|.++..|.+ .+-..+-.|-..+..++...+ +.+.|.++.++..+-..+...+.++...++.++..+... +
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 45677888888877 444566777778888887777 557799999999999999999999999999998887654 5
Q ss_pred HhhhHhhHhhhhHHHHHH
Q 001855 535 QEHFQKYYDAVMPFLKAI 552 (1004)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~ 552 (1004)
|..+.||+.+++|.+...
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 678899999999977543
No 242
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.60 E-value=8.2 Score=40.94 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=67.5
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC---CChhHHHHHHHHHHHHhhcCCcc
Q 001855 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF---QNPRVQAHAASAVLNFSENCTPE 495 (1004)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~ 495 (1004)
.+..+++.+..+++.++..|+..++.++..-+... ......+++.+++.+.+. ++..++..|+.++..++..-.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-- 182 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-- 182 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH--
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch--
Confidence 45556667888899999999999999988765443 221234445555444321 345567888999999985322
Q ss_pred cccCch--HHHHHHHHHHh-----hcCC--hhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhc
Q 001855 496 ILTPYL--DGIVSKLLVLL-----QNGK--QMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNA 556 (1004)
Q Consensus 496 ~l~~~~--~~i~~~l~~~l-----~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~ 556 (1004)
.+..+ ...++.+...+ .+.. .++.-.++.|+=.+ .+.+...+.+ ..++|.+..+++..
T Consensus 183 -~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~L~~i~~~~ 251 (312)
T PF03224_consen 183 -YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL--SFEPEIAEELNKKYLIPLLADILKDS 251 (312)
T ss_dssp -HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH--TTSHHHHHHHHTTSHHHHHHHHHHH-
T ss_pred -hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH--hcCHHHHHHHhccchHHHHHHHHHhc
Confidence 11111 45556666666 2222 23333333333322 2222221111 22888888888763
No 243
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=91.57 E-value=27 Score=39.08 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=51.7
Q ss_pred CCcchHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001855 139 NGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1004)
Q Consensus 139 ~~~~~ll~~L~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1004)
..+++++..+.+.+. +.++...++.+..+...++.++-.+. +...++..+..-+.+ .++.|...++||..++..
T Consensus 188 ~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s--~pd~r~~tl~CLtEi~~L 262 (1053)
T COG5101 188 IEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNS--MPDTRVATLSCLTEIVDL 262 (1053)
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHhh
Confidence 466777777777765 44677788888888888887765432 345566666655544 567888888888887764
No 244
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=91.43 E-value=15 Score=38.45 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHhH
Q 001855 475 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 475 ~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~--~~vr~~a~~~l~~l~~~~~ 535 (1004)
.+.+...+.+|..+......+.....++.|++.|...+..++ ++..-.-.+|+-++-...+
T Consensus 255 e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 255 EERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777666544455666777776666554433 3333344555555554444
No 245
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.21 E-value=4.6 Score=36.63 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHH
Q 001855 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1004)
Q Consensus 499 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~ 576 (1004)
......+..+.+-+.+.++.+...++..+..++..+|..|...+ ..++..+.+++..........+|.++++.+...+
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 34477888888999999999999999999999999998776433 4567777777665433333348999999999888
Q ss_pred hhhChhhhhhhHHHHHHH
Q 001855 577 MAVGKDKFRDDAKQVMEV 594 (1004)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~ 594 (1004)
..++...-.+++.+++..
T Consensus 118 ~~f~~~~~~~~i~~~y~~ 135 (140)
T PF00790_consen 118 EAFKSDPELSLIQDTYKR 135 (140)
T ss_dssp HHTTTSTTGHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHH
Confidence 777533333344444443
No 246
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=91.07 E-value=2.1 Score=36.20 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=56.7
Q ss_pred hhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHhhcCC
Q 001855 915 EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV-VKPLVGEALSRLNVVIRHP 976 (1004)
Q Consensus 915 ~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~-~~~~~~~~l~~L~~~l~~~ 976 (1004)
..+.|+++.++..+...++.-.++||.-|...|..+.++.|+. +..+..++++.+..++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4577899999999999999999999999999999999999988 7888899999999999866
No 247
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.04 E-value=3.5 Score=37.40 Aligned_cols=101 Identities=12% Similarity=0.251 Sum_probs=71.6
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHH
Q 001855 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA 464 (1004)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~ 464 (1004)
+..++|..-..-+..++.=. ..-...+..|.+.+.+.+|.+...|+..+..+++.++..+.... -..++..
T Consensus 13 l~~~dw~~il~icD~I~~~~--------~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~e 84 (144)
T cd03568 13 LTSENWGLILDVCDKVKSDE--------NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQE 84 (144)
T ss_pred CCCcCHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 34567765444443333211 12245677888889999999999999999999999988764332 2466667
Q ss_pred HHhhcCCCCChhHHHHHHHHHHHHhhcCCc
Q 001855 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1004)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 494 (1004)
+.+.+.+..++.|+..+...+......+..
T Consensus 85 L~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 85 LKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 767666646788999999999998887763
No 248
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.99 E-value=3.8 Score=36.75 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=61.6
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhcCC--CCChhHHHHHHHHHHHHhhcCC
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDD--FQNPRVQAHAASAVLNFSENCT 493 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~--~~~~~v~~~a~~~l~~l~~~~~ 493 (1004)
...+..|.+.+++++|.++..|+..+..+++.++..+...+.. ..+..+.+.+.. ..++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567788888999999999999999999999998877555544 566666666654 2577899999999999888776
Q ss_pred c
Q 001855 494 P 494 (1004)
Q Consensus 494 ~ 494 (1004)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 249
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=90.93 E-value=24 Score=37.50 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=89.1
Q ss_pred CcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcC----CCChHHHHHHHHHHHHHHHh
Q 001855 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTN----SNNPDVKIAALNAVINFIQC 215 (1004)
Q Consensus 140 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~vr~~a~~~l~~~~~~ 215 (1004)
.-|.++.++..++.+.+.+....+..+++.++.....-+.-.-++++..++.++.. ..+.+++.+++.+|.+++.-
T Consensus 312 ~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 312 ADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred cCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 34679999999999999999999999999998764432211223444444444422 13778888999999998765
Q ss_pred hcCcchHhHHHhhHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHh--HHHHHHHHHHhhcCCCcchHHHH
Q 001855 216 LTSSADRDRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLEEGTRH 292 (1004)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~vr~ 292 (1004)
.++ .. .++| .+.+.+...++...+.+...-+..+.-+....+...... -+.+++-+....+.+ +...+..
T Consensus 392 v~n---ka---~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~-D~aGv~g 464 (604)
T KOG4500|consen 392 VSN---KA---HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSP-DFAGVAG 464 (604)
T ss_pred CCc---hh---hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCC-ccchhhh
Confidence 432 11 1111 233344444444556665555555554443322111111 123444444433322 2334555
Q ss_pred HHHHHHHHHHHh
Q 001855 293 LAIEFVITLAEA 304 (1004)
Q Consensus 293 ~a~~~l~~l~~~ 304 (1004)
.....+.+++++
T Consensus 465 ESnRll~~lIkH 476 (604)
T KOG4500|consen 465 ESNRLLLGLIKH 476 (604)
T ss_pred hhhHHHHHHHHh
Confidence 666777777775
No 250
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=9.7 Score=41.74 Aligned_cols=157 Identities=10% Similarity=0.038 Sum_probs=96.3
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHh-hcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHH
Q 001855 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC-VSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (1004)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~-l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 186 (1004)
++.-|..+.++.+|-.....++.-..-. .-...+..++.. .++.+..+|.+|..+|+.+|-...+ ++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GT----gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~l 587 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGT----GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LL 587 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcC----CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hh
Confidence 3444433466777766555555332211 223345555554 5677889999999999987764322 22
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHH
Q 001855 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1004)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 266 (1004)
+...+.|.+..++.||....-+|+-....-. .+ ..+..|.....++..-+|+.|+-.+.-+...+.+.+
T Consensus 588 v~tvelLs~shN~hVR~g~AvaLGiacag~G----~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 588 VGTVELLSESHNFHVRAGVAVALGIACAGTG----DK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred hHHHHHhhhccchhhhhhhHHHhhhhhcCCc----cH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 2223333333488999887777776554321 11 122233333446677799999998888887777778
Q ss_pred HHhHHHHHHHHHHhhcCCCcc
Q 001855 267 RRQLVDVVGSMLQIAEAESLE 287 (1004)
Q Consensus 267 ~~~~~~i~~~l~~~~~~~~~~ 287 (1004)
.|.+..|...+.+.+.+++.+
T Consensus 657 np~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred ChhHHHHHHHHHHHHhhhhHh
Confidence 888888888888777666543
No 251
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=90.73 E-value=26 Score=37.37 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhH--HhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 418 QVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDL--QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 418 ~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
.++..++..|... +|.+-..||.=+|.++.+.|..- ..+| ..=..+++.++. ++++||-.|+.|+..++.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~--ggKe~vM~Llnh-~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY--GGKERVMNLLNH-EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh--chHHHHHHHhcC-CCchHHHHHHHHHHHHHh
Confidence 4677777777544 58999999999999999876432 1111 122456677788 999999999999998764
No 252
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.73 E-value=8.7 Score=37.42 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=66.5
Q ss_pred HHHHHHccccchhhHHH-----HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhh--hHhHHHHHHhhcCCCCh
Q 001855 865 GTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEACNDENQ 937 (1004)
Q Consensus 865 ~~l~~~~~~~~~~~~~~-----ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~~~~~l~~~~~ 937 (1004)
-+...++++.-..++.. ++|.+.....+.+.+-.|.+++++||.+++.....+..| ...++|..++.+...+.
T Consensus 103 lQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSe 182 (293)
T KOG3036|consen 103 LQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSE 182 (293)
T ss_pred HHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccH
Confidence 34444556554444443 556666655455566779999999999999988777664 45799999999999999
Q ss_pred hHHHHHHHHHHHHHhhc
Q 001855 938 DVRQAAVYGLGVCAEFG 954 (1004)
Q Consensus 938 ~vr~~a~~~lg~l~~~~ 954 (1004)
.-+..|++-++.+.-..
T Consensus 183 lSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 183 LSKTVATFILQKILLDD 199 (293)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999888877543
No 253
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=90.70 E-value=2.1 Score=36.12 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=55.0
Q ss_pred HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCC
Q 001855 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1004)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 471 (1004)
+.+.++++.++..+..++.+-.+.||..++..|.-+.+..|+.....+...+++..+..+.-
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999884478889999999888765
No 254
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=90.62 E-value=5.1 Score=38.70 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=74.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhh
Q 001855 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD 586 (1004)
Q Consensus 507 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~ 586 (1004)
.+.+.++-........++.+++.+...+|....|++..++..+.+.-.+ +....|..+=.|+|...+++|++.+..
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~----~~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES----EDFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 3444554455567788899999999999987777777777777665322 336678888999999999999886653
Q ss_pred hHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHH
Q 001855 587 DAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1004)
Q Consensus 587 ~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~ 641 (1004)
. +++-+ .+ -+...+-|..++-.+..-+ .+..+.-|...++|..-.
T Consensus 80 ~----lPLnl--~~--~~~~~~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 80 I----LPLNL--DN--ADDSQPGRAWLLPLLRDHI--RNASLSFFVEEFLPLARR 124 (198)
T ss_pred H----CCCCc--cC--CCcCCcccchhHHHHHHhc--cCCChHHHHHHHHHHHHH
Confidence 2 22111 10 0112233455555544322 244555556666664433
No 255
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.50 E-value=20 Score=35.64 Aligned_cols=63 Identities=24% Similarity=0.186 Sum_probs=48.9
Q ss_pred chHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001855 374 IVPVASEQLPAYLAA--PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1004)
Q Consensus 374 ~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1004)
..+.-+|.+.+.+.+ .++.+|+-|..+||.++.. ..++.|...++|+.+.||..|..++..+-
T Consensus 215 ~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 215 QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 344456666666655 5799999999999998853 45677778899999999999988887653
No 256
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.25 E-value=22 Score=35.75 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHH
Q 001855 33 STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLL 109 (1004)
Q Consensus 33 s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll 109 (1004)
.++.+.....-..|-++...+-. .....++.+. +......+..+..++-.+++.+ ...+ +..+..+....+
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~-~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~----~r~f-~~L~~~L~~~~~ 85 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNV-CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN----DRHF-PFLQPLLLLLIL 85 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCcc-chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC----chHH-HHHHHHHHHHHh
Confidence 34566666666667666653211 2233334332 3445555667777777776554 1111 222222222222
Q ss_pred HHHh----hcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhHhhhccccHHH
Q 001855 110 QSIQ----LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH 184 (1004)
Q Consensus 110 ~~l~----~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 184 (1004)
+... .+......-..+..+..+.+. .| +.|.++++.+.+.+ .+.++..+..++..+..+++.-.-++...+..
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~v 163 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCS-RP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKV 163 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHh-Ch-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 2111 112334445556677777775 45 49999999999999 67778888899999999996543333333333
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC-cchHhHHHhhHHHHHHHHHHHHhcCChh
Q 001855 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS-SADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1004)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 246 (1004)
+..-+..+..+.+-.. +..++..++. ..+.+.+..+...++..+++.....+.+
T Consensus 164 ----l~~~l~~~~rp~v~~~----l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 164 ----LQKKLSLDYRPLVLKS----LCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred ----HHHhcCCccchHHHHH----HHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 3333333334444433 3333333221 1133445556667888888877655543
No 257
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.08 E-value=0.56 Score=31.72 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 001855 924 YLPFLLEACNDENQDVRQAAVYGLGVCAE 952 (1004)
Q Consensus 924 l~~~~~~~l~~~~~~vr~~a~~~lg~l~~ 952 (1004)
.+|.++..|++++..|+..|+|+|+.++.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 58899999999999999999999998863
No 258
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.98 E-value=31 Score=37.13 Aligned_cols=221 Identities=13% Similarity=0.084 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhh----h-H
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ----Y-I 174 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~----~-~ 174 (1004)
.-..|.+.+...+..|.+.........+++.-.... ....-++++..+...+++..+.+|..-+..++.++. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 334566677778887777777777777777666544 223446788999999999888899999999888875 1 1
Q ss_pred hhhccccHHHHHHHHHHhhcCCCChHHHH---HHHHHHHHHHH-hhcCcchHhH-HH----hhHHHHH--HHHHHHHhcC
Q 001855 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKI---AALNAVINFIQ-CLTSSADRDR-FQ----DLLPLMM--RTLTESLNNG 243 (1004)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~---~a~~~l~~~~~-~~~~~~~~~~-~~----~~~~~~l--~~l~~~l~~~ 243 (1004)
.....+..+.++..+.++..++ ...... .+..++..... .......... .. +-=|.++ +.+.+.+ .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANP-LQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 2223345566666666666665 222111 11111111000 0000000000 00 0000100 0111111 2
Q ss_pred ChhHHHHHHHHHHHHHccchHHHHHhH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q 001855 244 NEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (1004)
Q Consensus 244 ~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (1004)
+++.....++.+..+.........+.. ..+-..++..+.......++|..|.+.+..+... .|.. +-..+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~---~~~~------l~~~l 245 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS---NPEL------LSKSL 245 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---ChHH------HHHHH
Confidence 556667777777777766554443322 3333334444433434788999999999988773 3321 33456
Q ss_pred HHHHHHhhcCC
Q 001855 323 FAILMSMLLDI 333 (1004)
Q Consensus 323 ~~~l~~~l~~~ 333 (1004)
+..+..++...
T Consensus 246 i~~l~~~l~~~ 256 (339)
T PF12074_consen 246 ISGLWKWLSSS 256 (339)
T ss_pred HHHHHHHHHhc
Confidence 66666655543
No 259
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=66 Score=40.65 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHh
Q 001855 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1004)
Q Consensus 433 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l 512 (1004)
.-...++.+.+.+...... ....+.++..+.....+..++++|.+++..+..++-...--......++|-..+.+.+
T Consensus 1502 ~a~~~a~~~~~lm~~~~~~---~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l 1578 (1710)
T KOG1851|consen 1502 LAKNSALLCHSLMSLSWIG---HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLL 1578 (1710)
T ss_pred HHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3344444454444433222 2234555666554444436889999988888776633211134577889999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhC
Q 001855 513 QNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1004)
Q Consensus 513 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~ 580 (1004)
.+.+..+|+.|..+++.+.......+.+ +............ ..+......|...+|.++-+++
T Consensus 1579 ~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~--s~~~i~~HgavlgLgA~VlafP 1641 (1710)
T KOG1851|consen 1579 NDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSK--SKDEIKAHGAVLGLGAIVLAFP 1641 (1710)
T ss_pred cchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhhc--chHHHHhhhhHHHHHHHHHhcc
Confidence 9998899999999999988654433222 1112222222111 1223344457788888887776
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.79 E-value=6.7 Score=35.56 Aligned_cols=79 Identities=9% Similarity=0.188 Sum_probs=61.2
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcc
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 495 (1004)
...+..|.+.+.+.++.++..|+..|..+++.++..+...+ -..++..+.+.+.+..++.|+..++..+......+..+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45677888899999999999999999999999887663332 23556666666654467899999999999988877643
No 261
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.52 E-value=52 Score=39.05 Aligned_cols=127 Identities=15% Similarity=0.194 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001855 373 TIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1004)
.+....+|.+.+-+ .+....+|..-+.+++.++.... ...+..+|.|..+|.|+++.||..++..|+++...
T Consensus 964 ~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~--- 1036 (1529)
T KOG0413|consen 964 RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQF--- 1036 (1529)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---
Confidence 34444555554433 34555666665666666554432 24567789999999999999999999999988753
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHH
Q 001855 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1004)
Q Consensus 452 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~ 511 (1004)
.+ .++-..++=..+-.+-| .++++|.-|-..++.++..-.+.. ++...++.++.+
T Consensus 1037 ~~-vKw~G~Lf~Rf~l~l~D-~~edIr~~a~f~~~~vL~~~~P~~---f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1037 GI-VKWNGELFIRFMLALLD-ANEDIRNDAKFYISEVLQSEEPNF---FPLNFVEYIIAL 1091 (1529)
T ss_pred hh-hhcchhhHHHHHHHHcc-cCHHHHHHHHHHHHHHHhhcCccc---hHHHHHHHHHHH
Confidence 22 23333444444444556 689999999999999887665432 334455555443
No 262
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.16 E-value=4.2 Score=36.93 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhch
Q 001855 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGP 451 (1004)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 451 (1004)
...+..+..-+++.++++..-|+..+..++.+|+..+...+ ..++..+.+.+.+ .++.|+..++..+..++..++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 34566677778889999999999999999999998554433 3466666666666 7899999999999999988864
No 263
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=88.98 E-value=3.8 Score=37.68 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH----------------HHHHHhHHHHHHHHHhhCCCCC----hhH
Q 001855 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA----------------KVMVKNLEQVLSMVLNSFRDPH----PRV 434 (1004)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~----------------~~~~~~l~~i~~~l~~~l~d~~----~~v 434 (1004)
.+.+++.+.+.+++ +.......+..|..+.+... +.+....+.+++.+.+.+.... ..+
T Consensus 24 Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~ 102 (148)
T PF08389_consen 24 WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEEL 102 (148)
T ss_dssp STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHH
T ss_pred CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 33344444444443 34555555655555554332 1233445666666666654322 788
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHH
Q 001855 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1004)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l 485 (1004)
...++.+++.+..+.+.... .-..+++.+++.+.+ +..+..|+.+|
T Consensus 103 ~~~~L~~l~s~i~~~~~~~i--~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 103 VKAALKCLKSWISWIPIELI--INSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHTTTS-HHHH--HSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHh--ccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 99999999999998876542 224699999999976 45588888775
No 264
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.96 E-value=15 Score=35.25 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccC
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~---~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~ 88 (1004)
-+.++++.+.+++..+|..|.+.+....++ +|...++.++.+. +++++.+|..|..+++..-.++
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALE-TSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhh-CCCChHHHHHHHHHHHHHHHHh
Confidence 467788999999999999999999887766 8988888888865 5689999999999999998876
No 265
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=87.86 E-value=1 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001855 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1004)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1004)
..+|.++..+++.++.++..|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999886
No 266
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=87.73 E-value=4.9 Score=32.64 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001855 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1004)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~ 256 (1004)
-..++..+...+....+.++|...+.|+.+++... .+.+..=++.++..+.....++++++...|++++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-----~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSR-----GENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-----HHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 35566666666555458999999999999999874 34445557788888888888888888888888765
No 267
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=87.49 E-value=9.6 Score=37.95 Aligned_cols=95 Identities=11% Similarity=0.124 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHccccchhhHHH-----HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhh--hHhHHHHHHhh
Q 001855 859 QVGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEA 931 (1004)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~~~~~~-----ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~~~~~ 931 (1004)
++..++..++. +++.-.+++.. ++|.+-...+..+-+..|.++++++|.+++.-...+..| -..++|..+..
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 34455555554 55554455444 455554443323335568999999999999877776664 34899999999
Q ss_pred cCCCChhHHHHHHHHHHHHHhhc
Q 001855 932 CNDENQDVRQAAVYGLGVCAEFG 954 (1004)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~ 954 (1004)
+..++..-|-.|.+-+..+....
T Consensus 148 me~GselSKtvAtfIlqKIL~dd 170 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDD 170 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSH
T ss_pred HHhccHHHHHHHHHHHHHHHcch
Confidence 98888888889999888877553
No 268
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.44 E-value=2.5 Score=36.39 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 419 VLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 419 i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
++..|...| .+.++.+...||.=||.++...|..- ..+ -..=..+++.+.+ +++.||..|+.++..++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr--~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR--NIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH--HHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH--HHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 445555555 34478888999999999999876432 222 2344556778888 999999999999998864
No 269
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=61 Score=37.33 Aligned_cols=123 Identities=19% Similarity=0.079 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCC
Q 001855 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND 934 (1004)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~ 934 (1004)
.+|..+...||-++-.-++. +|..+..+..+-++-+|..+.-++|-.|...|... .+..+-....|
T Consensus 570 DVrRaAVialGFVl~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D 635 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSD 635 (929)
T ss_pred HHHHHHHHHheeeEecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcC
Confidence 36777777777666655544 34444555467788899999999998888877532 23333334458
Q ss_pred CChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHH
Q 001855 935 ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALG 995 (1004)
Q Consensus 935 ~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~ 995 (1004)
+...|||.|..+++-+--..++..-|-+..+-+.+..++.+.. ++.+++-.|+-|=|
T Consensus 636 ~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKh----Ed~~aK~GAilAqG 692 (929)
T KOG2062|consen 636 PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKH----EDGMAKFGAILAQG 692 (929)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhh----hHHHHHHHHHHHhh
Confidence 8899999999999999888888888889999999999987653 35677777766554
No 270
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.28 E-value=11 Score=33.76 Aligned_cols=77 Identities=9% Similarity=0.199 Sum_probs=59.5
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHHHhhcCCCCChh-HHHHHHHHHHHHhhcCC
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCT 493 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~ 493 (1004)
...+..|.+.+.+++|.+...|+..+..+++.++..+...+. ..++..+.+.+.+..+.. |+..++..+......+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 456678888999999999999999999999999887744432 356777777766633333 89999998888887775
No 271
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.00 E-value=36 Score=34.20 Aligned_cols=199 Identities=13% Similarity=0.095 Sum_probs=104.0
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCC
Q 001855 61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG 140 (1004)
Q Consensus 61 L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~ 140 (1004)
|++-+.+..+++........|......+ . .....+.+ .+..+.+.+....+..+...+..+.+.. + ..
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~--------~-~~~~~v~~-~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~-r~ 72 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHK--------N-VCVPPVLQ-TLVSLVEQGSLELRYVALRLLTLLWKAN-D-RH 72 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccC--------c-cchhHHHH-HHHHHHcCCchhHHHHHHHHHHHHHHhC-c-hH
Confidence 3444455667777776777777766543 1 11222222 3333443344444455556666665542 1 24
Q ss_pred cchHHHHHHHhh-------cC--CChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhh-cCCCChHHHHHHHHHHH
Q 001855 141 WPELLPFMFQCV-------SS--DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL-TNSNNPDVKIAALNAVI 210 (1004)
Q Consensus 141 ~~~ll~~L~~~l-------~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~vr~~a~~~l~ 210 (1004)
++.+-+.+.... .+ ..++...+....+..+|+..++ +...+++.+..++ ++. ++.++..+++++.
T Consensus 73 f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~ 147 (234)
T PF12530_consen 73 FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALA 147 (234)
T ss_pred HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 455544444411 11 1234444445677777777666 5678888888888 565 8889999999999
Q ss_pred HHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc--cchHHHHHhHHHHHHHHHHhhcCC
Q 001855 211 NFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG--TEPRFLRRQLVDVVGSMLQIAEAE 284 (1004)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~i~~~l~~~~~~~ 284 (1004)
.+...- .-.+...+..+.+.+ -.+..+.+....+..+.-+.. ...+.......+++..+++.....
T Consensus 148 ~Lc~~~-----vvd~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 148 PLCEAE-----VVDFYSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHh-----hccHHHHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 888541 222222222222222 112234444433333332221 112334445567888888776543
No 272
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.54 E-value=17 Score=32.83 Aligned_cols=101 Identities=8% Similarity=0.173 Sum_probs=70.1
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHH
Q 001855 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLP 463 (1004)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~ll~ 463 (1004)
.+.+++|..-..-+..+..=. ..-...+..+.+.++++++.+...|+..|..+++.++..+..... ..++.
T Consensus 13 ~l~~~dw~~ileicD~In~~~--------~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 13 SNREEDWEAIQAFCEQINKEP--------EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred cCCCCCHHHHHHHHHHHHcCC--------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 344677866555444443211 112345677888899999999999999999999999887743333 45566
Q ss_pred HHHhhcCC-----CCChhHHHHHHHHHHHHhhcCC
Q 001855 464 ALAGAMDD-----FQNPRVQAHAASAVLNFSENCT 493 (1004)
Q Consensus 464 ~l~~~l~~-----~~~~~v~~~a~~~l~~l~~~~~ 493 (1004)
.+.+.+.. ..+..|+..++..+......++
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66666642 2567899999999988887775
No 273
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=42 Score=34.58 Aligned_cols=134 Identities=10% Similarity=-0.014 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHccc-cchhhHHH--HHHhHhhhh-cCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhH-hHHHHHH
Q 001855 855 EVFDQVGEILGTLIKTFKA-AFLPFFDE--LSSYLTPMW-GKDKTAEERRIAICIFDDVAEQCREAALKYYE-TYLPFLL 929 (1004)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~-~~~~~~~~--ll~~l~~~l-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~l~~~~~ 929 (1004)
..|..+-.|+..|-+..|. +...++-. -+|.+...+ +.+.++.+-..++.++..++-..+.+....++ -.-...+
T Consensus 299 ~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~av 378 (461)
T KOG4199|consen 299 GNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAV 378 (461)
T ss_pred hHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHH
Confidence 3455566777777777774 34333322 344444433 34667888888888999888776666544433 2233455
Q ss_pred hhcCC--CChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHH
Q 001855 930 EACND--ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSAL 994 (1004)
Q Consensus 930 ~~l~~--~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~ 994 (1004)
+.++. ....|+++|.+.+-.++..+...-.+++..=...|++.-..+ .+.+++.|=.|+
T Consensus 379 qAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~------h~tce~~akaAL 439 (461)
T KOG4199|consen 379 QAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN------HETCEAAAKAAL 439 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc------CccHHHHHHHHH
Confidence 66653 346799999999999999988777777777777777765544 345555554444
No 274
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=85.73 E-value=57 Score=35.34 Aligned_cols=232 Identities=14% Similarity=0.137 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHccchH---HHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhcc
Q 001855 232 MMRTLTESLNNGNEATAQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1004)
Q Consensus 232 ~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 308 (1004)
+.+.+...+-+++.++|..+++++..++..... ...-+++.++-.. +......+.-|.+|+.++..+.+.++ .
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~S---L~~~~~~~~ER~QALkliR~~l~~~~-~ 101 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRS---LDRDNKNDVEREQALKLIRAFLEIKK-G 101 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhh---hcccCCChHHHHHHHHHHHHHHHhcC-C
Confidence 333333333344688999999999877754422 1122333333222 22222345569999999999988521 1
Q ss_pred chhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcc-hHHHHHHHHHhhc
Q 001855 309 PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI-VPVASEQLPAYLA 387 (1004)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~ 387 (1004)
+ +.++ ..++..++...... ++..+.++.+++..++-..+ +-+ ...-+..+...+.
T Consensus 102 ~---~~~~---~~vvralvaiae~~-----------------~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 102 P---KEIP---RGVVRALVAIAEHE-----------------DDRLRRICLETLCELALLNP-ELVAECGGIRVLLRALI 157 (371)
T ss_pred c---ccCC---HHHHHHHHHHHhCC-----------------chHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHHHH
Confidence 1 1222 33344443332221 22345566666665554332 110 0011223333333
Q ss_pred CCChhHHHHHHHHHHHHHhhcHH--HHHH--hHHHHHHHHHhh----CCCCCh-hHHHHHHHHHHHhhhhhchhHH-hhh
Q 001855 388 APEWQKHHAALIALAQIAEGCAK--VMVK--NLEQVLSMVLNS----FRDPHP-RVRWAAINAIGQLSTDLGPDLQ-NQF 457 (1004)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~--~~~~--~l~~i~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~~-~~~ 457 (1004)
+.....-++.+.++-.+.+.... .+.. .++.++..+... ..+... ..-..+..++..+.+.-++-+. ...
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 33333555666666666654432 1111 234444444433 222221 1233444555555443322210 001
Q ss_pred hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC
Q 001855 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1004)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 492 (1004)
--.-+..++..|.- +++.+|......+..++.--
T Consensus 238 ~~~~lksLv~~L~~-p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 238 DFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHCCC
Confidence 11567778888888 88889999888888887643
No 275
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.50 E-value=1.1e+02 Score=38.61 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHH
Q 001855 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWA 437 (1004)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 437 (1004)
..+++..|-...+ +.+..++|.+...+.+.+-.+|.-|...+|.+.......+....+.++..+++.+.|.++.||..
T Consensus 242 ~he~i~~L~~~~p--~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~ 319 (1266)
T KOG1525|consen 242 YHELILELWRIAP--QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRME 319 (1266)
T ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhh
Confidence 3445555555443 56677889999999999999999999999999877665555667889999999999999999999
Q ss_pred HHHHHHHhhhhhchh----------------------------------HHhhhhhhhHHHHHhhcCCCCChhHHHHHHH
Q 001855 438 AINAIGQLSTDLGPD----------------------------------LQNQFHPQVLPALAGAMDDFQNPRVQAHAAS 483 (1004)
Q Consensus 438 a~~~l~~l~~~~~~~----------------------------------~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~ 483 (1004)
+..+...+.-..+.. +.-.+.+.++..+.+.+.| ..+.||..|+.
T Consensus 320 ~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~ 398 (1266)
T KOG1525|consen 320 CVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMN 398 (1266)
T ss_pred HHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHH
Confidence 988877655432210 0011334477788888999 89999999999
Q ss_pred HHHHHhhc------CCcccccCchHHHHHHHHHHhhcCChhHH
Q 001855 484 AVLNFSEN------CTPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1004)
Q Consensus 484 ~l~~l~~~------~~~~~l~~~~~~i~~~l~~~l~~~~~~vr 520 (1004)
.|..+-++ .+...+.+-+..|-..++.++...+...|
T Consensus 399 ~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 399 GLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 99998874 12233445556566666666665544444
No 276
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=85.43 E-value=16 Score=38.61 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHhhhhH-hhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH--HHhhcCcchHhHHHhhHHHHHHHHHHHH
Q 001855 164 FLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF--IQCLTSSADRDRFQDLLPLMMRTLTESL 240 (1004)
Q Consensus 164 l~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~l 240 (1004)
+.-++.+.+.+ +..+......++..+..+++++ +-.|-..|+....+= ...+ .+...-++|.+.+.|....
T Consensus 320 L~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~-HFQVAEraL~~wnNe~i~~Li-----~~n~~~ilPiiFpaLyr~s 393 (457)
T KOG2085|consen 320 LNELEEILEVIEPSEFQKIMVPLFRQIARCVSSP-HFQVAERALYLWNNEYIRSLI-----SQNAEVILPIVFPALYRNS 393 (457)
T ss_pred HhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCCh-hHHHHHHHHHHHhhHHHHHHH-----HhccceeeehhhHHHHHHH
Confidence 44455555544 3345556667777777888887 888877776555421 2211 1112234556666555543
Q ss_pred hcC-ChhHHHHHHHHHHHHHccchHHHHHh
Q 001855 241 NNG-NEATAQEALELLIELAGTEPRFLRRQ 269 (1004)
Q Consensus 241 ~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 269 (1004)
+.. +..+...++..+..+.+..+..|...
T Consensus 394 k~hWN~~i~~l~~nvlk~f~emd~~LFeec 423 (457)
T KOG2085|consen 394 KSHWNQAIHNLILNVLKTFMEMDPKLFEEC 423 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 321 23344555666666666666665553
No 277
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.38 E-value=11 Score=34.15 Aligned_cols=78 Identities=13% Similarity=0.272 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcCCCCChh---HHHHHHHHHHHHhhc
Q 001855 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR---VQAHAASAVLNFSEN 491 (1004)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~---v~~~a~~~l~~l~~~ 491 (1004)
-...+..|.+.|.+.+|.++..|+..+..+++.+++.+...+ -..++..+.+.+.+..... |+..+...+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 355678888999999999999999999999999987774332 2345666666554323333 899999988888887
Q ss_pred CC
Q 001855 492 CT 493 (1004)
Q Consensus 492 ~~ 493 (1004)
+.
T Consensus 120 f~ 121 (140)
T PF00790_consen 120 FK 121 (140)
T ss_dssp TT
T ss_pred HC
Confidence 75
No 278
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=85.25 E-value=5.4 Score=32.42 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=55.2
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHH
Q 001855 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLG 948 (1004)
Q Consensus 882 ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg 948 (1004)
++..+...+...++.++|...+.|+..++...+..+...++.++..+-....+.+..+-..|+.++.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4444444444567889999999999999999999999999999999999998888888888877653
No 279
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.00 E-value=45 Score=42.27 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=95.8
Q ss_pred chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhH-hhhcc---ccHHHHHHHHHH
Q 001855 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLT---PHLKHLHAVFLN 191 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~-~~~~~---~~~~~l~~~l~~ 191 (1004)
.+..+|..+.++++.-+ +..|..++..+.....+.+....+.+...+..+.+.. ...+. ..+...++.+..
T Consensus 1049 ~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~ 1123 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEE 1123 (1514)
T ss_pred CcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHH
Confidence 45678888888888222 2489999999988877777777777777777555543 22222 234455566665
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhhcCc---ch---------HhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001855 192 CLTNSNNPDVKIAALNAVINFIQCLTSS---AD---------RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1004)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~~~~~~~~~---~~---------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 259 (1004)
...+...+..-..+++.+..++..+.+. .. ......++|.+...=. ...+...++|..+++.+-.+.
T Consensus 1124 F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~-i~~~~~~~vr~~al~vlF~il 1202 (1514)
T KOG0929|consen 1124 FTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSK-IINDYRLEVRKRALEVLFDIL 1202 (1514)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhH-HhhccHHHHHHHHHHHHHHHH
Confidence 5554433444445555555554443322 00 1112234555444322 223567889999999999999
Q ss_pred ccchHHHHHh-HHHHHHHHHHhh
Q 001855 260 GTEPRFLRRQ-LVDVVGSMLQIA 281 (1004)
Q Consensus 260 ~~~~~~~~~~-~~~i~~~l~~~~ 281 (1004)
..+++.|.+. ...++..++.+.
T Consensus 1203 ~~~g~~F~~~~We~v~~~~fpIF 1225 (1514)
T KOG0929|consen 1203 KEHGDDFSKEFWEDVFRILFPIF 1225 (1514)
T ss_pred HhhhhhccHHHHHHHHHheeecc
Confidence 8887766553 445666555554
No 280
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=51 Score=37.37 Aligned_cols=67 Identities=15% Similarity=0.030 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001855 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1004)
Q Consensus 144 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1004)
-+..|...+-+++...+.+++..++.......+ ..+..+.++...++++ +..+|..++--|+.....
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~n----e~dpalALLsdyv~~~-~s~~ri~aIlGLglayaG 482 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFN----ECDPALALLSDYLQSS-SSIHRIGAILGLGLAYAG 482 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccc----ccCHHHHHHHHhccCC-CceeehHHhhhhHHhhcC
Confidence 345555555555556666666666644443322 3566677778888887 889998887777655543
No 281
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.43 E-value=3.7 Score=35.35 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=51.7
Q ss_pred hHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhcccchHHHH--HHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHh
Q 001855 923 TYLPFLLEACN-DENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1004)
Q Consensus 923 ~l~~~~~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~ 999 (1004)
.++..+++.|. +.++.+-..|..=+|.+++..|.. +..+ ...-..++.+++.+ ++.+|-+|+.|+.+++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~------d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHE------DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-S------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCC------CHHHHHHHHHHHHHHHH
Confidence 45666666664 347788888999999999998753 3333 23455677777665 78999999999999998
Q ss_pred hh
Q 001855 1000 LF 1001 (1004)
Q Consensus 1000 ~~ 1001 (1004)
++
T Consensus 116 ~~ 117 (119)
T PF11698_consen 116 NN 117 (119)
T ss_dssp HS
T ss_pred hc
Confidence 64
No 282
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=84.23 E-value=49 Score=33.31 Aligned_cols=126 Identities=14% Similarity=0.278 Sum_probs=77.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHh----hcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc------
Q 001855 193 LTNSNNPDVKIAALNAVINFIQC----LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------ 262 (1004)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~------ 262 (1004)
++|+ ++.|.+.++.|...+... +......+.....+..+-..+...+.+.++.+|..+++.+..++-..
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4666 889999888888877664 21111122222223334444555566778899999999988765322
Q ss_pred ------------------------hHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001855 263 ------------------------PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1004)
Q Consensus 263 ------------------------~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1004)
+..++.....+++.++..+.....+...-..++..|..+++. -+.+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~----------RP~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ----------RPQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH----------SGGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH----------hhHH
Confidence 122333445678888887766555566677777888888773 3457
Q ss_pred HHHHHHHHHHh
Q 001855 319 INRLFAILMSM 329 (1004)
Q Consensus 319 ~~~l~~~l~~~ 329 (1004)
...+++.+..+
T Consensus 151 ~~~Il~~ll~~ 161 (239)
T PF11935_consen 151 MSRILPALLSF 161 (239)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 78888887665
No 283
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.93 E-value=66 Score=40.67 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=78.9
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhH
Q 001855 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1004)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 462 (1004)
+.+...+...|.-|+..++.+.+....... ..++.....+.+...|.+..||.....++..+...++..+ .+|+..++
T Consensus 48 kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~li 126 (1312)
T KOG0803|consen 48 KKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSLI 126 (1312)
T ss_pred HHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhh
Confidence 344456778888888888888875443222 2244444555567789999999999999999999998888 89999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 463 PALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
|..+-..-| ....|..+|...+.....
T Consensus 127 ~~wl~~~~d-~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 127 PPWLGGQFD-LDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hhhhheecc-cchHHHHHHHHHHHhhcC
Confidence 999888888 667777777776666554
No 284
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.67 E-value=6.5 Score=35.31 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=59.3
Q ss_pred hhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchH-HHHHHHHHHhhc---CChhHHHHHHHHHHHHHHH
Q 001855 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN---GKQMVQEGALTALASVADS 533 (1004)
Q Consensus 458 ~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~-~i~~~l~~~l~~---~~~~vr~~a~~~l~~l~~~ 533 (1004)
....+..+.+.++. +++.++..|+..|..++.+++..+-..+.. ..+..+.+++.. .+..|+..++..+......
T Consensus 35 ~k~a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35677788888888 899999999999999999998533222222 444556676654 4678999999999999888
Q ss_pred hHh
Q 001855 534 SQE 536 (1004)
Q Consensus 534 ~~~ 536 (1004)
++.
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 764
No 285
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=83.07 E-value=9.8 Score=39.65 Aligned_cols=111 Identities=12% Similarity=0.198 Sum_probs=74.9
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001855 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1004)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1004)
.+.+.-.+...+.+|......|.-++.--++ -.+.+..|.+++++.+|.|.-.|+..++.++..++..+..+
T Consensus 12 ~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~--------~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~E 83 (462)
T KOG2199|consen 12 DVEKATDEKNTSENWSLILDVCDKVGSDPDG--------GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLE 83 (462)
T ss_pred HHHHhcCcccccccHHHHHHHHHhhcCCCcc--------cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHH
Confidence 3444444455667898877766655543322 24577888999999999999999999999999888766433
Q ss_pred hh-hhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcc
Q 001855 457 FH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1004)
Q Consensus 457 ~~-~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 495 (1004)
.. ..+...+...+.+..++.|+......+....+.+..+
T Consensus 84 VsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 84 VSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 22 2333333344443367888888878888887766543
No 286
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.06 E-value=28 Score=31.17 Aligned_cols=79 Identities=18% Similarity=0.080 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHh
Q 001855 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~ 577 (1004)
.-...+..+.+-+.++++.+...++..+..++..+|..|...+ ..++..|..++..... ...++.++++.+...+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 3456778888888899999999999999999999998765422 3566777776654322 22388888998888887
Q ss_pred hhC
Q 001855 578 AVG 580 (1004)
Q Consensus 578 ~~~ 580 (1004)
+++
T Consensus 112 ~f~ 114 (133)
T smart00288 112 AFK 114 (133)
T ss_pred HHc
Confidence 775
No 287
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.99 E-value=17 Score=33.02 Aligned_cols=77 Identities=10% Similarity=0.164 Sum_probs=57.2
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcccc--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001855 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH--LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1004)
Q Consensus 142 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1004)
.+.+..|..-++++++++...|+.+|..+.+.++..|... -..++..+...+.+..++.|+..++..+..+...+.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567777777788889999999999999999887654321 2334455555554344889999999999999988753
No 288
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.64 E-value=75 Score=34.20 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=96.8
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh-----hcHHHHHHhHHHHHHHHHhhCCCCChhHH----HHHHHHH
Q 001855 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-----GCAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAI 442 (1004)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~-----~~~~~~~~~l~~i~~~l~~~l~d~~~~vr----~~a~~~l 442 (1004)
..+-+.++..+.+.+++....+|.+-+.+++.... .......+.++.++..+-+....+.+... ..+...+
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 45667788889999999888899999999999875 22223444555555555555555544322 1222222
Q ss_pred HHhhhhhchhHHh-hhh---------h--hhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHH
Q 001855 443 GQLSTDLGPDLQN-QFH---------P--QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1004)
Q Consensus 443 ~~l~~~~~~~~~~-~~~---------~--~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~ 510 (1004)
. ......+.+.. ... + -+-+.++..+.+ .+...-.+.++..++...............-..++.
T Consensus 136 ~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~---~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ 211 (339)
T PF12074_consen 136 A-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS---EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIY 211 (339)
T ss_pred H-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC---HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 2 11000000000 000 0 011222333222 233444666777776665532221223556677777
Q ss_pred HhhcC--ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHh
Q 001855 511 LLQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1004)
Q Consensus 511 ~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (1004)
++-++ ...+|..+..++..+....+.. +...++..+-+.+.
T Consensus 212 ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 212 LLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKWLS 254 (339)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHH
Confidence 77777 7899999999999988776643 33444455555443
No 289
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=82.59 E-value=61 Score=33.19 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCChh-HHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001855 379 SEQLPAYLAAPEWQ-KHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1004)
Q Consensus 379 ~~~l~~~l~~~~~~-~r~aal~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1004)
+..+.+.++..++. -...|+.-++++++..|+...-.... .-..++..+++++++||..|+.++..+..
T Consensus 358 ~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 358 VKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 33444444443332 34456777888888777643322221 23567788999999999999988876653
No 290
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=81.99 E-value=1.2e+02 Score=36.05 Aligned_cols=152 Identities=21% Similarity=0.264 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc-hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHH
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDP-DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p-~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~ 101 (1004)
.+..++..+-|+|..+..++...+++...+.- .+++..|++...++.+..+ .-+|-.. +. |-.+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~----~~il~~~-~~----------P~~K 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRA----LEILVGV-QE----------PHDK 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHH----HHHHHhc-CC----------ccHH
Confidence 36678888889999999999998887665432 2355666665544443332 2233221 11 1111
Q ss_pred HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc------chHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhH
Q 001855 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW------PELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYI 174 (1004)
Q Consensus 102 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~------~~ll~~L~~~l~-~~~~~~r~~al~~l~~l~~~~ 174 (1004)
.+...+=+.+. .+..|..+...++.+++.. | .| ..|++.|+.++. +.+..+...|+.+|-.+.-.+
T Consensus 70 -~~~~~l~~~~~---~~~~Rl~~L~Ll~~~v~~q-p--~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -HLFDKLNDYFV---KPSYRLQALTLLGHFVRSQ-P--PWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -HHHHHHHHHHc---CchhHHHHHHHHHHHHhcC-C--chHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 22223333333 4567888888999998853 2 34 468888888876 557788888999999888888
Q ss_pred hhhccccHHHHHHHHHHhhcCC
Q 001855 175 GDTLTPHLKHLHAVFLNCLTNS 196 (1004)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~ 196 (1004)
+..+.++++.++.++..++...
T Consensus 143 p~~l~~~L~~Lf~If~Rl~~W~ 164 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLLSWE 164 (668)
T ss_pred cchhhHHHHHHHHHHHHHHHcc
Confidence 8888889999999999888554
No 291
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=81.93 E-value=1.3e+02 Score=36.45 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhhhHhhh---cc--ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHH
Q 001855 159 LQESAFLIFAQLSQYIGDT---LT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMM 233 (1004)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~---~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l 233 (1004)
..+.++.+|..+.+..++- |. ..+-..++.+...+.....+++...+++.+..+..+.+ ..+.+..- ..+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~---Cv~~~a~~--~vL 1815 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE---CVTDLATC--NVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH---HHHHHHhh--hHH
Confidence 4567888888888775531 11 12233345555555554577899888888876655421 11111110 133
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHHHHh
Q 001855 234 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1004)
Q Consensus 234 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1004)
..+...+.+ -+..|..++..|..+.+.. +.....+.. -+..++.++.+ ...+..|.++.+++..+...
T Consensus 1816 ~~LL~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~-~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1816 TTLLTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCL-TNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhc-cCcHHHHHHHHHHHHHhhhc
Confidence 344444444 6788999999998887643 222221110 01111111111 23567788888877776553
No 292
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.14 E-value=1.4e+02 Score=36.53 Aligned_cols=128 Identities=13% Similarity=0.236 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC
Q 001855 394 HHAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1004)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 472 (1004)
|...+...........+.+..++..++. .++...+|-.|.+|..+..-||.++...|..+. -...+..+-=.|.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsD- 337 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSD- 337 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeec-
Confidence 5666665555555555556666666664 445678999999999999999999988876552 23444454446788
Q ss_pred CChhHHHHHHHHHHHHhhcCC-cccccCchHHHHHHHHHHh-hcCChhHHHHHHH
Q 001855 473 QNPRVQAHAASAVLNFSENCT-PEILTPYLDGIVSKLLVLL-QNGKQMVQEGALT 525 (1004)
Q Consensus 473 ~~~~v~~~a~~~l~~l~~~~~-~~~l~~~~~~i~~~l~~~l-~~~~~~vr~~a~~ 525 (1004)
.+..||..+..+|..+.+.-. ...++.+....=..++... .+.+..||...+.
T Consensus 338 k~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~ 392 (1048)
T KOG2011|consen 338 KNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLV 392 (1048)
T ss_pred CccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 889999999999999998621 1123334444444455554 3444556554443
No 293
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.94 E-value=56 Score=31.66 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001855 395 HAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1004)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1004)
...+..++.+.+.++....+.+..++..+...-.+++-..|..+-.++|..+..++++.
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHH
Confidence 34455566666666655556777787777777677777889999999999999998854
No 294
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.83 E-value=18 Score=32.52 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC------CCChhHHHHHHHHHHHhhhh
Q 001855 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR------DPHPRVRWAAINAIGQLSTD 448 (1004)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~ 448 (1004)
..+..+..-+++.++++..-|+..+..++.+|+..+...+ ..++..+.+.+. ..++.|+..++..+..++..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556677778899999999999999999999987554333 234444555553 35789999999999999988
Q ss_pred hch
Q 001855 449 LGP 451 (1004)
Q Consensus 449 ~~~ 451 (1004)
++.
T Consensus 118 f~~ 120 (139)
T cd03567 118 LPH 120 (139)
T ss_pred hcc
Confidence 864
No 295
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=80.30 E-value=37 Score=33.52 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHH-HHHHHHhhhhhchhH
Q 001855 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAA-INAIGQLSTDLGPDL 453 (1004)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a-~~~l~~l~~~~~~~~ 453 (1004)
......+.++..+...+.|..|+..++........ ..++.+...+. -+++.+.... ..+++.+..
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~------ 116 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLK------ 116 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHH------
Confidence 44455666777888888888888888764433222 13344444443 3466666554 333444332
Q ss_pred HhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001855 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1004)
Q Consensus 454 ~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 533 (1004)
.+ +...+.+.+.+.+ +++-+|..++.++...... .+.+.++..+...+.+++..++..+-.++..++..
T Consensus 117 --~~-~~~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 117 --KH-PEALELLEKWAKS-DNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp --HH-GGHHHHHHHHHHC-SSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred --hh-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 11 5566777777778 7888888877666554433 56677888888888888888998888888777766
Q ss_pred hHhhhHhhHhh
Q 001855 534 SQEHFQKYYDA 544 (1004)
Q Consensus 534 ~~~~~~~~~~~ 544 (1004)
.++...+|+..
T Consensus 186 ~~~~v~~~l~~ 196 (213)
T PF08713_consen 186 DPDEVLEFLQK 196 (213)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55554455443
No 296
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.13 E-value=21 Score=33.18 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHh--hhHhHHHHHHhhc
Q 001855 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK--YYETYLPFLLEAC 932 (1004)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~l~~~~~~~l 932 (1004)
.+|..+.-++..+....++.+...+..++..++. +...+....++.++..++...+..... .-+.+++.++..+
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~----~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLD----EGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc----cccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 4677788888888877777776666665554443 223336777888888888775554433 2456777777777
Q ss_pred C--CCChhHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHhhcCCCCCCchhhh-hHHHHHHHHHHH
Q 001855 933 N--DENQDVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRHPNALQPENLM-AYDNAVSALGKI 997 (1004)
Q Consensus 933 ~--~~~~~vr~~a~~~lg~l~~~~~--~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~-~~~na~~a~~~l 997 (1004)
. ..+..+...++.+|...+.... ..+. .+-++.|....+.. .+.. +|-.|+-+++|+
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~r~~I~---~~~~~~L~~~~~~~-----~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSCRTFIS---KNYVSWLKELYKNS-----KDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH---HHCHHHHHHHTTTC-----C-HH-CHHHHHHHHHHC
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHHHHHHH---HHHHHHHHHHHccc-----cchHHHHHHHHHHHhcC
Confidence 7 6788899999999888886542 3443 44455555555332 1344 888888888874
No 297
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=79.63 E-value=1.8e+02 Score=36.82 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhh
Q 001855 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 449 (1004)
.+..+.+.|++....+--.++-.|-++...++....-..+ .-++.+.+.+..+|..+-..+..+|..+...-
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 4555666677766655555666666666666553322222 24577888888888888888888888777644
No 298
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.52 E-value=2.7 Score=28.51 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHH
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINA 441 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1004)
+.+...+...+.|+++.||.+|..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4677888999999999999999865
No 299
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=79.33 E-value=1.3e+02 Score=34.96 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc
Q 001855 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1004)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 260 (1004)
.+..+++++...-.++ -..|+..+++.+..++..-+.. -. .++..+...+.+++..+...|...|..+..
T Consensus 301 ly~rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kPEq-----E~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKPEQ-----EN----NLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCcHH-----HH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 4555666666666776 7899999999999998864221 11 355556666777787888888889988888
Q ss_pred cchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001855 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1004)
.+|..-.-.+..|..+++. ++.+......|+-+|+.+.-
T Consensus 371 ~HPnMK~Vvi~EIer~~FR----pn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 371 KHPNMKIVVIDEIERLAFR----PNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hCCcceeehHHHHHHHHcc----cCccccceeehhhhhhhhHh
Confidence 8876544455666666654 44455556667777776543
No 300
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=79.15 E-value=10 Score=31.26 Aligned_cols=60 Identities=18% Similarity=0.080 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHH
Q 001855 934 DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1004)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l 997 (1004)
+.++.+|..|+..|+.+++..+..+...-+.+...+...+.+|.. ...+.=.|+.+|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~----~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK----PLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHH
Confidence 456899999999999999998877777778999999999988753 556777787777766
No 301
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.12 E-value=8.8 Score=33.44 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHH---HHHHHHHhhc--CC-----CChHHHHHHHHH
Q 001855 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH---LHAVFLNCLT--NS-----NNPDVKIAALNA 208 (1004)
Q Consensus 139 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~---l~~~l~~~l~--~~-----~~~~vr~~a~~~ 208 (1004)
....+++.+|..-+++.++.++.-+|.+|..++...++.|...+.. ++..+.+.-. |+ .+..||..|-++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 4677899999999999889999999999999999876665443322 2222222211 11 246788888777
Q ss_pred HHHHHH
Q 001855 209 VINFIQ 214 (1004)
Q Consensus 209 l~~~~~ 214 (1004)
+..+..
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 766543
No 302
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=78.89 E-value=10 Score=34.91 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH-HHhHhhhHhhHhhhhHHHHHHHhhcC
Q 001855 521 EGALTALASVA-DSSQEHFQKYYDAVMPFLKAILVNAT 557 (1004)
Q Consensus 521 ~~a~~~l~~l~-~~~~~~~~~~~~~i~~~l~~~l~~~~ 557 (1004)
..|+..+..+. ...++-+.|+++.++|.+.+.|..+.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCch
Confidence 45677777776 44566677999999999999887654
No 303
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=78.24 E-value=41 Score=30.47 Aligned_cols=102 Identities=6% Similarity=0.121 Sum_probs=66.3
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhH
Q 001855 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVL 462 (1004)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~ll 462 (1004)
.+.+++|..-..-+..+..=. ..-...+..|.+.+. ++++.+...|+..+..+++.++..+..... ..++
T Consensus 13 ~l~~~dw~~ileicD~In~~~--------~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 13 SLQSEDWGLNMEICDIINETE--------DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCCcCHHHHHHHHHHHhCCC--------CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 344567765554444443211 112345677777776 578999999999999999999887742221 3555
Q ss_pred HH-HHhhcCCC--CChhHHHHHHHHHHHHhhcCCc
Q 001855 463 PA-LAGAMDDF--QNPRVQAHAASAVLNFSENCTP 494 (1004)
Q Consensus 463 ~~-l~~~l~~~--~~~~v~~~a~~~l~~l~~~~~~ 494 (1004)
.. +.+.+... .+..|+..++..+......+..
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 54 55555431 2457899999999988887764
No 304
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.80 E-value=1.5e+02 Score=34.77 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001855 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1004)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1004)
+.+...+....+..+...+...+.+||.+..... +..+.+.+. +-....+.+|.+|+++|..++...+...
T Consensus 445 ~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~------i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v-- 515 (574)
T smart00638 445 KYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSS------IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV-- 515 (574)
T ss_pred HHHHHHHHHHHhcCCchheeeHHHhhhccCChhH------HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH--
Confidence 3344444444445566678888999997764321 122223222 2234468999999999999887655433
Q ss_pred hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHH
Q 001855 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~ 487 (1004)
-+.+++...+. ..++++|.+|+..|..
T Consensus 516 --~~~l~~i~~n~---~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 516 --QEVLLPIYLNR---AEPPEVRMAAVLVLME 542 (574)
T ss_pred --HHHHHHHHcCC---CCChHHHHHHHHHHHh
Confidence 22233333221 2467899888777655
No 305
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=77.41 E-value=42 Score=30.92 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHccc-cchhhHHHHHHhHhhhhcC--CCCHHHH-HHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCC
Q 001855 859 QVGEILGTLIKTFKA-AFLPFFDELSSYLTPMWGK--DKTAEER-RIAICIFDDVAEQCREAALKYYETYLPFLLEACND 934 (1004)
Q Consensus 859 ~~~~~l~~l~~~~~~-~~~~~~~~ll~~l~~~l~~--~~~~~~r-~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~ 934 (1004)
.+.+++-.++-...+ .|.|.+.++...-...+.+ ......| .+-.+.+..+.+....-+.||+..++..+.+.|+.
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777775 6889999888765543322 2233344 44557888888888888999999999988877754
Q ss_pred CC----------hhHHHHHHHHHHHHHhhcc
Q 001855 935 EN----------QDVRQAAVYGLGVCAEFGG 955 (1004)
Q Consensus 935 ~~----------~~vr~~a~~~lg~l~~~~~ 955 (1004)
.+ ...++..+.+|.....+..
T Consensus 120 ~~~~~~~~~~~~~~L~~~vL~~L~~~F~~D~ 150 (153)
T PF08146_consen 120 FNSSKTESKSKSWELWRLVLSTLQKCFLHDQ 150 (153)
T ss_pred hhhccccchhhHHHHHHHHHHHHHHHHhhcc
Confidence 32 3455555555555555443
No 306
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=76.75 E-value=4 Score=33.30 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001855 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1004)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1004)
..|++++.+|++++...+..+.++++.++..+....+| ...|+..+-.+++.+-+.-.+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 57899999999999998888888999999998888886 66788898999988876554433
No 307
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.46 E-value=1.5e+02 Score=34.07 Aligned_cols=107 Identities=7% Similarity=0.078 Sum_probs=79.8
Q ss_pred HHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC--------CcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhc
Q 001855 107 MLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1004)
Q Consensus 107 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~--------~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1004)
.+...|.+ .+..+|.....+.+.++.+....+ +..+++..+.+-+.+..|-.|.-|+.++..++..-.. +
T Consensus 303 ~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk-~ 380 (1128)
T COG5098 303 HFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK-T 380 (1128)
T ss_pred HHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-c
Confidence 34455555 578888888888888876543322 3456777777888888999999999999988875322 2
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001855 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1004)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 216 (1004)
...-..+.......++|. +..||+.|++.+..+....
T Consensus 381 ~~~r~ev~~lv~r~lqDr-ss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDR-SSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcC
Confidence 223566777888889997 9999999999999988754
No 308
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=76.05 E-value=16 Score=30.15 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhc-CCCCHHHHHHHHHHHHHH
Q 001855 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG-KDKTAEERRIAICIFDDV 909 (1004)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~r~~al~~l~~l 909 (1004)
..|.+|+.++++++.+++.++......-..+...+.+.+. .+++...+..|+..+..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999997765544556666666553 345566677777777666
No 309
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.01 E-value=23 Score=35.96 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=70.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001855 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1004)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1004)
.+.+++.+.++.+|.+|+..+..+.......+..+-...++.+.+.+.+..+ -.-|..++.+++... ......++.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHH
Confidence 4556788899999999998776666553344455556678888888888877 344556666766543 222344555
Q ss_pred hHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 461 ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
++..++..+.+ +........|..+.++.+
T Consensus 83 ~~k~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 83 LLKVLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 77777777777 545566667777777654
No 310
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=75.86 E-value=1e+02 Score=33.21 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHhcCCChHH--HHHHHHHHHHhhhc-CchHH----HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCc
Q 001855 20 DSAPFETLISHLMSTSNEQ--RSEAELLFNLCKQQ-DPDSL----TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFL 92 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~--r~~A~~~L~~~~~~-~p~~~----~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~ 92 (1004)
+...+..++..+++|+.+. |-+|...|+++... |-+.+ ...++.+......++..++.+-+|.++++..
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS---- 253 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS---- 253 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh----
Confidence 3456777888889998765 99999999886532 33322 1222233233566777777777888887653
Q ss_pred ccCCCHHH-HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcc
Q 001855 93 WPRLSLHT-QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135 (1004)
Q Consensus 93 w~~l~~~~-~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~ 135 (1004)
+...... .....+.++-.+.. .++.+-+.++.+++.++-+.
T Consensus 254 -eet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~ 295 (832)
T KOG3678|consen 254 -EETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHG 295 (832)
T ss_pred -HHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhc
Confidence 1100000 00111122223344 56788888888998887654
No 311
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.09 E-value=40 Score=29.27 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHh----hC--CCCChhHHHHHHHHHHH
Q 001855 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLN----SF--RDPHPRVRWAAINAIGQ 444 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~l~~ 444 (1004)
.....++..+..-+++.+|.+..-|+..+..++.++++.+..++.. ++..++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4456688888888999999999999999999999998755544322 2222221 11 34578999999888776
Q ss_pred hh
Q 001855 445 LS 446 (1004)
Q Consensus 445 l~ 446 (1004)
++
T Consensus 113 w~ 114 (115)
T cd00197 113 WA 114 (115)
T ss_pred Hh
Confidence 54
No 312
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.96 E-value=49 Score=28.92 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh---hhHHHHHhhcC-------CCCChhHHHHHHHH
Q 001855 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP---QVLPALAGAMD-------DFQNPRVQAHAASA 484 (1004)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~ll~~l~~~l~-------~~~~~~v~~~a~~~ 484 (1004)
.+..++..|.+.|+++++.|+..++.+|..++..-++.+ ...+. .++..+.+.-. +..+..||..|-.+
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f-~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF-KRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH-HHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 356788999999999999999999999999998766655 23222 23333333222 11345688888888
Q ss_pred HHHHhh
Q 001855 485 VLNFSE 490 (1004)
Q Consensus 485 l~~l~~ 490 (1004)
+..++.
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 877764
No 313
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.50 E-value=1.7e+02 Score=33.70 Aligned_cols=130 Identities=13% Similarity=0.169 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHH------HHHHhHHHHHHHHHhhCCCCCh
Q 001855 359 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMVKNLEQVLSMVLNSFRDPHP 432 (1004)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~~~l~~i~~~l~~~l~d~~~ 432 (1004)
...+..+++..| .-.+. =+..+.+.+.+.....|.+-+.+++.++..... .....+..++..+...+.|.+|
T Consensus 283 slFl~kls~l~p-~i~lr-q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 283 SLFLNKLSELSP-GIMLR-QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHhhcCc-hHHHH-HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 345556665544 22222 245666788899999999999999999886532 2233567788899999999999
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCC
Q 001855 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1004)
Q Consensus 433 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 493 (1004)
.+|..|+..+..+..- +... ..--..+...+..+++| ....||..|+..++.++...+
T Consensus 361 y~RtKalqv~~kifdl-~sk~-~~~r~ev~~lv~r~lqD-rss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 361 YTRTKALQVLEKIFDL-NSKT-VGRRHEVIRLVGRRLQD-RSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHHHHHHHHHHHhC-cccc-cchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999988763 2222 23346788888999999 889999999999999876543
No 314
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.41 E-value=1.5e+02 Score=33.24 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001855 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1004)
.++..++.++.....+++-.+|+-++..+..++....+.-....+.++..+...+-|..+.||..|..+|..+-+.-.+.
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 44555556666677888999999999999999988766434455667788888899999999999999999987654332
Q ss_pred HHhhhhhhhHHHHHhhcCCCCChhHHHHHHHH
Q 001855 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASA 484 (1004)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~ 484 (1004)
-..+...+...++..++..||..|+.-
T Consensus 167 -----en~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 167 -----ENRIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred -----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 123333444444433777888876543
No 315
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.10 E-value=17 Score=34.80 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhh--hHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 001855 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1004)
Q Consensus 882 ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1004)
++|.+...-+.++-.-.|.+++++||.++++.++.+..+ ...++|.++..+...+..-+-.|++.+|.+.-.
T Consensus 146 lypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 146 LYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred eHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 445555433233345568999999999999988877664 457899999999888888888888888877643
No 316
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.77 E-value=2.3e+02 Score=34.93 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=63.5
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc--hHHHHHhH
Q 001855 193 LTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFLRRQL 270 (1004)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~ 270 (1004)
-.|- .+.+|...+..|+.++..++. .|.. ..+++.+.-.+.+.+..+|..++++|..+.+.. ...+.-++
T Consensus 296 YRDV-~~~IRaiCiqeLgiWi~~yP~-----~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFt 367 (1048)
T KOG2011|consen 296 YRDV-DPDIRAICIQELGIWIKSYPE-----IFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFT 367 (1048)
T ss_pred cccC-chHHHHHHHHHHHHHHHhccH-----HHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4565 899999999999999998742 2211 156777777778889999999999999988762 12222223
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 001855 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1004)
Q Consensus 271 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~ 300 (1004)
..+-.-++... ..+.+..||...+.....
T Consensus 368 sRFK~RIVeMa-drd~~~~Vrav~L~~~~~ 396 (1048)
T KOG2011|consen 368 SRFKDRIVEMA-DRDRNVSVRAVGLVLCLL 396 (1048)
T ss_pred HHHHHHHHHHH-hhhcchhHHHHHHHHHHH
Confidence 32223333333 345567777666544433
No 317
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=73.63 E-value=21 Score=42.05 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhH-hHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhh
Q 001855 896 AEERRIAICIFDDVAEQCREAALKYYE-TYLPFLLEACN-DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 973 (1004)
Q Consensus 896 ~~~r~~al~~l~~l~~~~~~~~~~~~~-~l~~~~~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l 973 (1004)
...|..++..|+.++...+.++..... .+++.++++|. |.+..+-..|+.+|--+.-..+..+.+|++.++.++..++
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 467999999999999998887766444 78888899886 7889999999999999999999999999999999999998
Q ss_pred c
Q 001855 974 R 974 (1004)
Q Consensus 974 ~ 974 (1004)
.
T Consensus 162 ~ 162 (668)
T PF04388_consen 162 S 162 (668)
T ss_pred H
Confidence 5
No 318
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.33 E-value=1.3e+02 Score=38.45 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHh---hcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCC
Q 001855 395 HAALIALAQIAE---GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1004)
Q Consensus 395 ~aal~~l~~l~~---~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 471 (1004)
+.+..++..+++ ...+.+...++.++..+..+.+.++..+-.....|+.++....+..+....++.+...+.+.++.
T Consensus 1243 tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1243 TTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHh
Confidence 344444444444 33344445677777777888888888888888899998888777766566677777777666554
No 319
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.88 E-value=1e+02 Score=31.50 Aligned_cols=140 Identities=23% Similarity=0.227 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCCC-----hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhhhhhch
Q 001855 378 ASEQLPAYLAAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGP 451 (1004)
Q Consensus 378 l~~~l~~~l~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1004)
.+|++...+.+++ ...+. ....|+.+++..+. +.+..++....+ ..++.+..++..+ ..+.+.+-
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~-~A~~La~~a~~~~~---~~La~il~~ya~~~fr~~~dfl~~v~----~~l~~~f~- 182 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIE-IAEALAQVAEAQGL---PNLARILSSYAKGRFRDKDDFLSQVV----SYLREAFF- 182 (262)
T ss_pred HHHHHHHHhcccccccccHHHHH-HHHHHHHHHHhCCC---ccHHHHHHHHHhcCCCCHHHHHHHHH----HHHHHHhC-
Confidence 4455555555544 33333 33556666643221 345555544433 3344443333322 22222221
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001855 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1004)
Q Consensus 452 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 531 (1004)
.++...++..++..+.+ +.+.+|..++..|..++...... .|+-.+++..+.++++.+- ...|+..+..+.
T Consensus 183 ---P~~~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 183 ---PDHEFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred ---chhHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 24456677777888877 77889999999999999988644 5688889999999987754 345666666655
Q ss_pred HHhH
Q 001855 532 DSSQ 535 (1004)
Q Consensus 532 ~~~~ 535 (1004)
...|
T Consensus 254 ~~s~ 257 (262)
T PF14225_consen 254 TRSG 257 (262)
T ss_pred hhcc
Confidence 5444
No 320
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=72.78 E-value=41 Score=29.52 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001855 373 TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1004)
.+++.++|.+...+. +.....|.++++.++.++...+= -.+.++.++..+.+....... ...+..++..+...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467889999999998 77889999999999999976431 113455666666665554444 45667777777643
No 321
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.49 E-value=76 Score=29.86 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcch----HhHHHhhH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHH
Q 001855 198 NPDVKIAALNAVINFIQCLTSSAD----RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (1004)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 272 (1004)
+...|..+++.+..+++....... ...+...+ ..+...+.....++++.+...+++++..+...+...+...+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777765321111 01122211 2334444444444568888899999999998888888888887
Q ss_pred HHHHHHH-hhcCCCcchHHHHHHHHHHHHHHH
Q 001855 273 VVGSMLQ-IAEAESLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 273 i~~~l~~-~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1004)
++..++. +++.+.....-|..+++++..+++
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 7777776 444332234578889999999997
No 322
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=71.48 E-value=20 Score=33.28 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=79.8
Q ss_pred ccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC--C
Q 001855 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR--D 429 (1004)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~--d 429 (1004)
.+..+.-++..+-...+ +.....+..++...+...+......++.++..+..+.++.....+ +.+++.+..... .
T Consensus 21 ~r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 34445555555443333 455566667777777665555667777788888777777554432 345666666665 6
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChh-HHHHHHHHHHH
Q 001855 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLN 487 (1004)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~-v~~~a~~~l~~ 487 (1004)
++..+..+++.+++.-+.. ...........++.+-+.++..++.. +|..|.-+|..
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7788888999988776542 22223345666777777775425555 77777766654
No 323
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=70.40 E-value=1.5e+02 Score=31.50 Aligned_cols=107 Identities=12% Similarity=0.235 Sum_probs=72.2
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcH----HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-hHHhhhh--
Q 001855 386 LAAPEWQKHHAALIALAQIAEGCA----KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFH-- 458 (1004)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~----~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~-- 458 (1004)
++.++..+--.|+..+..+..... +.+..+.+.++..+...+.++|-..|..++..||.+...-.. .+...|+
T Consensus 173 ~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~ 252 (335)
T PF08569_consen 173 VQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISS 252 (335)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-
T ss_pred hcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCC
Confidence 344444444445555554443322 244566778888888899999999999999999999864322 2223444
Q ss_pred hhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCC
Q 001855 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1004)
Q Consensus 459 ~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 493 (1004)
+.-+..++..|+| +.+.+|-.|...+.-++.+-.
T Consensus 253 ~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 253 PENLKLMMNLLRD-KSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHhcC-cchhhhHHHHHHHHHHHhCCC
Confidence 4667788889999 899999999999999987654
No 324
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=69.88 E-value=77 Score=27.80 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcC
Q 001855 414 KNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1004)
Q Consensus 414 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 492 (1004)
.+++.++|.+..++. ...+..|.++...++.++...+=. .+.+..++..+.+.... ... ...+..++..++...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 357789999999998 788999999999999999765322 34556666666665555 222 467888888888665
No 325
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=69.84 E-value=34 Score=44.13 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=79.7
Q ss_pred HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 001855 409 AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1004)
Q Consensus 409 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l 488 (1004)
...+..|++.++...-..+..+++.|+.-+......+...+... +-+.++..++..+.+ .+..-...|+..|..+
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~s-g~~~ev~~aL~vL~~L 500 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGS-GNSQEVDAALDVLCEL 500 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 34556788888888888889999999999998888887776421 346788888777755 4454457889999999
Q ss_pred hhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001855 489 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1004)
Q Consensus 489 ~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 534 (1004)
+...+ +.+.+| ...+..++..+++-+..--..++..+..++...
T Consensus 501 ~~~~~-~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 501 AEKNP-SELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHH-H-HHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HhccH-HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 98655 456666 345555666666654333335677777776543
No 326
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.80 E-value=22 Score=36.12 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=68.6
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCc
Q 001855 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1004)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~ 500 (1004)
..+...+.+.+|.||.+|..-+..+... +......|-...++.+.+.+.+ ..+ ...|..++.++.....- -...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l--~~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEEL--RKKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHH--HHHH
Confidence 3456778899999999999877777655 3333367788899999999988 544 55677788887765431 1122
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001855 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1004)
Q Consensus 501 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 532 (1004)
+..++..++..+.++....-..++..+.++++
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 33355556666666654444455555555543
No 327
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=69.47 E-value=6.9 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001855 182 LKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1004)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1004)
.+.+...+...+.|+ ++.||.+|++.+
T Consensus 16 ~~~v~~~i~~rl~D~-s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDS-SPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCC-ChHHHHHHHHHC
Confidence 457888899999998 999999998753
No 328
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=69.08 E-value=2.2e+02 Score=32.85 Aligned_cols=411 Identities=11% Similarity=0.106 Sum_probs=190.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchH------------hHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHH
Q 001855 95 RLSLHTQSSLKSMLLQSIQLESAK------------SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQES 162 (1004)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~~~~~------------~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~ 162 (1004)
.++++..+.|.+..+..|... ++ .+-+..|+++|.+.+..+. ..-..++..|-+..++.+ ..+..
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~-d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~-sVsdRF~~eL~~~~~~~~-~~~~~ 103 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTA-DPVSEQPSTSPLRLANWDLFAELLGVLSEIRFV-SVSDRFIAELEKLRKDSN-DAESK 103 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhcc-CccccccccchhHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHhcccCC-chHHH
Confidence 344555555555555555431 11 3445667777777775554 233455666655554222 22222
Q ss_pred HHHHHH---Hhh-hhHh-hhcc---ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch----HhHHHhhHH
Q 001855 163 AFLIFA---QLS-QYIG-DTLT---PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD----RDRFQDLLP 230 (1004)
Q Consensus 163 al~~l~---~l~-~~~~-~~~~---~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~~~ 230 (1004)
...++. .+- +..+ +.+. .++..+-+.+.+.- .+.+++.+-++.+..++.-+..... .....+.+.
T Consensus 104 ~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h---~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~ 180 (552)
T PF14222_consen 104 IELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH---KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVE 180 (552)
T ss_pred HHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Confidence 222222 211 1112 1121 13333444443321 3667999999999888765432111 112233333
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHc-cchHHHHHhHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhh--
Q 001855 231 LMMRTLTESLNNGNEATAQEALELLIELAG-TEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-- 306 (1004)
Q Consensus 231 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-- 306 (1004)
.+.+.+.+.... +..-..++.+...+.. ..+++|..+.. .+++.+...+++ ...|..+++++..+.-..-
T Consensus 181 ~i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKd----k~~r~~~l~~l~RLlWvYL~~ 254 (552)
T PF14222_consen 181 TIYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKD----KETRPVALECLSRLLWVYLVY 254 (552)
T ss_pred HHHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCC----hhhhHHHHHHHHHHHHHHHhc
Confidence 444444444432 3444456666665544 34567777777 688887776643 3667788887776654311
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHHHhcCCCcc-hHHHHHHHHHh
Q 001855 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI-VPVASEQLPAY 385 (1004)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~ 385 (1004)
+.+........-++.++..+++.- ...|...| ......-.+++..++.... +-. -..+++.+...
T Consensus 255 r~~Es~n~T~krL~~i~~~lfp~~-----kk~~i~~D--------~~~~~~lv~ii~~I~~~~~-df~~~~iI~~LL~~~ 320 (552)
T PF14222_consen 255 RCPESLNNTTKRLDSIFKLLFPKG-----KKGWIPRD--------PEPLNPLVQIIRFIGYKHL-DFAFRNIIFPLLNVS 320 (552)
T ss_pred ccCCCchHHHHHHHHHHHHHccCC-----CCcccCCC--------hhhhhhHHHHHHhHhhhCc-chHHHHHHHHHHccc
Confidence 111100111223444555444221 11233221 0122233455555554433 222 33455555543
Q ss_pred hc-----CCChhHHHHHHHHHHHHHhhcHHHHHH-------------------hHHHHHHHHHhhCCCCChhHHHHHHHH
Q 001855 386 LA-----APEWQKHHAALIALAQIAEGCAKVMVK-------------------NLEQVLSMVLNSFRDPHPRVRWAAINA 441 (1004)
Q Consensus 386 l~-----~~~~~~r~aal~~l~~l~~~~~~~~~~-------------------~l~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1004)
.. +-+++.-..++.++-.+.......-.+ .....++ .....+......-...+.+
T Consensus 321 ~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~ 399 (552)
T PF14222_consen 321 FNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRA 399 (552)
T ss_pred cccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCccccccc-chhhccccHHHHHHHHHHH
Confidence 32 235777778888887777653210000 0000111 0011111222223455566
Q ss_pred HHHhhhhhchhHHhhhhhhhHHHH-----------HhhcCCCCChhHHHHHHHHHHHHhhcCCcccccC--chHHHHHHH
Q 001855 442 IGQLSTDLGPDLQNQFHPQVLPAL-----------AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP--YLDGIVSKL 508 (1004)
Q Consensus 442 l~~l~~~~~~~~~~~~~~~ll~~l-----------~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~--~~~~i~~~l 508 (1004)
++.+...+...+....+..--... +..-.| ...-+......+...++..+ -.+.. -...+++.|
T Consensus 400 l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d--~~~~~~~~~~Lf~t~i~aiP-rcL~~~i~~~~lielL 476 (552)
T PF14222_consen 400 LGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDD--MVTDQKPQLDLFRTCIQAIP-RCLPSSIPFKSLIELL 476 (552)
T ss_pred HHHHHHHHHHHhchhhccCcccccCCCCCCccccccccccc--ccccccchhHHHHHHHHHcc-ccCCCCCcHHHHHHHH
Confidence 666666554333111110000000 000011 00111223344555555444 12222 246778888
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001855 509 LVLLQNGKQMVQEGALTALASVADSSQ 535 (1004)
Q Consensus 509 ~~~l~~~~~~vr~~a~~~l~~l~~~~~ 535 (1004)
....-+.++.+++.+..++..++...+
T Consensus 477 ~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 477 CRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred hcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 888788899999999999999987653
No 329
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=69.05 E-value=1.7e+02 Score=31.44 Aligned_cols=176 Identities=14% Similarity=0.238 Sum_probs=97.4
Q ss_pred CcchHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCC-------------CChHHHHHH
Q 001855 140 GWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-------------NNPDVKIAA 205 (1004)
Q Consensus 140 ~~~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-------------~~~~vr~~a 205 (1004)
.|...+..+.++++. .+|++-...+.-|....+.-.=-....+..+...+.+.+.|. ...++....
T Consensus 138 ~is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~ 217 (356)
T PF03542_consen 138 PISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCV 217 (356)
T ss_pred eHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHH
Confidence 345566667777654 366654444433333332210000011334444333332221 245777788
Q ss_pred HHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCC
Q 001855 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES 285 (1004)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ 285 (1004)
+.+|..++.+.+.- +...- ..+++.+...+.+ .....|+..|.-.+-..|..+.+.++.|+..+-++.
T Consensus 218 ~~~Ls~LisYh~~~-~k~~q----d~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~---- 285 (356)
T PF03542_consen 218 FPVLSALISYHSHF-SKQEQ----DEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIS---- 285 (356)
T ss_pred HHHHHHHHHHHHhc-CHhHH----HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc----
Confidence 88888888875311 11111 2455566555543 234556666665555667888888888887765544
Q ss_pred cchHHHHHHHHHHHHHHHhhhccc-hhhhcc-hhhHHHHHHHHHHhhc
Q 001855 286 LEEGTRHLAIEFVITLAEARERAP-GMMRKL-PQFINRLFAILMSMLL 331 (1004)
Q Consensus 286 ~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~-~~~~~~l~~~l~~~l~ 331 (1004)
....+..-.+|++..++. .| .....+ .+....++..+++++.
T Consensus 286 tt~~~Ai~ILEFLs~L~~----lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 286 TTPNMAIHILEFLSSLSR----LPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred cchhhHHHHHHHHHHHhh----CcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 245567778999999998 45 444332 3455667777777654
No 330
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=69.00 E-value=49 Score=35.53 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHcccc-chhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhH-hHHHHHHhh
Q 001855 854 EEVFDQVGEILGTLIKTFKAA-FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYE-TYLPFLLEA 931 (1004)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~l~~~~~~~ 931 (1004)
..+|..++.++.++.....-+ +... -+..++..-+..+..+....+++.++.++++..+.....+. -.+..++-.
T Consensus 196 t~vRve~~rlLEq~~~aeN~d~va~~---~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~ 272 (832)
T KOG3678|consen 196 TSVRVEAARLLEQILVAENRDRVARI---GLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYW 272 (832)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhc---cchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheee
Confidence 356777888888777654422 2111 12222222223455666778899999999997665443222 334555666
Q ss_pred cCCCChhHHHHHHHHHHHHHhhcccchHHH-HHHH-HHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhh
Q 001855 932 CNDENQDVRQAAVYGLGVCAEFGGSVVKPL-VGEA-LSRLNVVIRHPNALQPENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~-~~~~-l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~ 1000 (1004)
++..+|.+-+.++.+||..+-+.+...+.. ++.- -.-|..+- .. .+..+|--||.|.+.|..+
T Consensus 273 ~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~s-----kDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 273 CRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FS-----KDELLRLHACLAVAVLATN 337 (832)
T ss_pred cccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cc-----hHHHHHHHHHHHHhhhhhh
Confidence 777889999999999999999988766543 3322 22333332 21 2668888899888887654
No 331
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=68.96 E-value=54 Score=29.73 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHH-HHhhCC---CCChhHHHHHHHHHHHhhhhh
Q 001855 377 VASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSM-VLNSFR---DPHPRVRWAAINAIGQLSTDL 449 (1004)
Q Consensus 377 ~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~-l~~~l~---d~~~~vr~~a~~~l~~l~~~~ 449 (1004)
..+..+..-++ +.+.++..-|+..+..++.+|+..+...+ ..++.. +.+.+. +.+..|+..++..+..++..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 34555666665 46888888889999999999987554333 234443 455554 245689999999999999888
Q ss_pred chh
Q 001855 450 GPD 452 (1004)
Q Consensus 450 ~~~ 452 (1004)
++.
T Consensus 118 ~~~ 120 (141)
T cd03565 118 RGS 120 (141)
T ss_pred CCC
Confidence 653
No 332
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=68.78 E-value=2.6e+02 Score=33.51 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=86.1
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhcccCCCCc----
Q 001855 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPENGW---- 141 (1004)
Q Consensus 67 ~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~~~~~---- 141 (1004)
.+.++..+..|-.-||+ |++-+. . ...|.....+. .+-++|-.+.--+.....+.|.+..-
T Consensus 14 qs~~p~s~k~AE~~Lrq---------we~q~g-F----~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~ 79 (947)
T COG5657 14 QSPDPPSVKCAEERLRQ---------WEKQHG-F----ALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSIL 79 (947)
T ss_pred cCCCCchHhhHHHHHHh---------hhcccc-H----HHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCC
Confidence 47788899999999988 654322 2 22333333332 45667777666666666554442100
Q ss_pred c----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhc
Q 001855 142 P----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1004)
Q Consensus 142 ~----~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~ 217 (1004)
| -+-..++.++-+.+......-..+.+.++.. ++...++++++-+...+++. +..+-...+.++.+++..+.
T Consensus 80 p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~---DfPdeWpTL~~DL~~~Ls~~-D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 80 PDENVLIRDELFSLIISSSNQLQIQNALAVSRIARL---DFPDEWPTLVPDLLSLLSEK-DMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred CccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhc---cCcccchhHHHHHHhhhccc-chHHHHHHHHHHHHHHHHHh
Confidence 0 1234445554444333222233444545443 23336899999998888885 66666677777777776643
Q ss_pred Cc-chHhHHHhhHHHHHHHHHHH
Q 001855 218 SS-ADRDRFQDLLPLMMRTLTES 239 (1004)
Q Consensus 218 ~~-~~~~~~~~~~~~~l~~l~~~ 239 (1004)
.. -....|....|.+...+...
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pf 178 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPF 178 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHH
Confidence 21 12344555566555544443
No 333
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.67 E-value=1.1e+02 Score=29.31 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=56.5
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh
Q 001855 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1004)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1004)
+.+++...+ ++..+|..+.+.+..+.+..+- .=.+.+|.++.+..|+++..|..|...+..+.+..+.-
T Consensus 11 ~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 11 KNILELCLS-SDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 345566665 7899999999999999987543 33467999999999999999999999999998876654
No 334
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.34 E-value=2.8e+02 Score=33.67 Aligned_cols=163 Identities=16% Similarity=0.087 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhc----chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhh----Hh
Q 001855 104 LKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY----IG 175 (1004)
Q Consensus 104 i~~~ll~~l~~~----~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~----~~ 175 (1004)
+.-.+.+.|... .++.+|.....++..+...... ..+.+++|-+..++-++++..|..|...+..+... ..
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch
Confidence 334555655531 2455777777777776653222 23378899999999889999999999999988663 23
Q ss_pred hhccc-cHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHh--hHHHHHHHHHHHHhcCChhHHHHH
Q 001855 176 DTLTP-HLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQD--LLPLMMRTLTESLNNGNEATAQEA 251 (1004)
Q Consensus 176 ~~~~~-~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~a 251 (1004)
+++.. ..+.+...+... +.. .++..-..-=..+..++..+.+..-...+.. +-| +...+...+.....+.....
T Consensus 157 ~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHHH
Confidence 44432 233444444444 221 1222222222233444444422111222222 234 66677776766546677788
Q ss_pred HHHHHHHHccchHHHHHh
Q 001855 252 LELLIELAGTEPRFLRRQ 269 (1004)
Q Consensus 252 ~~~L~~l~~~~~~~~~~~ 269 (1004)
+++|..+.+..+..|...
T Consensus 235 L~~l~~lL~k~~~~FW~~ 252 (727)
T PF12726_consen 235 LRCLSILLEKLGSDFWDA 252 (727)
T ss_pred HHHHHHHHHhCHHHHhcc
Confidence 899999999888777653
No 335
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.81 E-value=7.4 Score=25.89 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001855 419 VLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1004)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1004)
.++.+++.++++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777888889999999999999875
No 336
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.81 E-value=7.5 Score=25.85 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 001855 924 YLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1004)
Q Consensus 924 l~~~~~~~l~~~~~~vr~~a~~~lg~l~ 951 (1004)
.++.+++.++.+++.++..|+++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4677777788889999999999999875
No 337
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=67.73 E-value=67 Score=30.24 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHH---------H-hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001855 391 WQKHHAALIALAQIAEGCAKVMV---------K-NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1004)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~---------~-~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1004)
...|.-++..+..+.+..+..+. . .-..+.+.+.+.+..+++.+-..++..+..+...++..+ ...++.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L-k~ele~ 114 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL-KLELEV 114 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44555666666666655544333 1 114566777777766668888889999998888887766 666778
Q ss_pred hHHHHHh-hcCCCCC--hhHHHHHHHHHHHHhh
Q 001855 461 VLPALAG-AMDDFQN--PRVQAHAASAVLNFSE 490 (1004)
Q Consensus 461 ll~~l~~-~l~~~~~--~~v~~~a~~~l~~l~~ 490 (1004)
+++.++. .+.. ++ ...|..++.++..++.
T Consensus 115 ~l~~i~~~il~~-~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILES-DNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHcc-CCCcHHHHHHHHHHHHHHHh
Confidence 8888777 4443 33 3566778888888875
No 338
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=67.41 E-value=83 Score=27.25 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhh----c-CCCCChhHHHHHHHHHHHH
Q 001855 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGA----M-DDFQNPRVQAHAASAVLNF 488 (1004)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~----l-~~~~~~~v~~~a~~~l~~l 488 (1004)
....++..|.+.+.+++|.+...|+.+|..+++..+..+...... .++..+++. . ....+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345688889999999999999999999999999988776322211 222222221 1 1114667888877766543
No 339
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=66.68 E-value=74 Score=33.61 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=59.2
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhc
Q 001855 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (1004)
Q Consensus 374 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 450 (1004)
.-...+..+...+++.++.+..-|+..++.++.+|++.+...+ .++...+...+. ..++.|+.....++..+++.+.
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 3445677788888899999999999999999999998654333 234445555555 5689999988888888888765
Q ss_pred hh
Q 001855 451 PD 452 (1004)
Q Consensus 451 ~~ 452 (1004)
.+
T Consensus 122 ~D 123 (462)
T KOG2199|consen 122 KD 123 (462)
T ss_pred cC
Confidence 43
No 340
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=66.30 E-value=18 Score=28.17 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhh
Q 001855 393 KHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDL 449 (1004)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 449 (1004)
...+++.++|.++...... ++++ ++++.+++.. +.+...+|..|+.+|+-++...
T Consensus 3 ~lKaaLWaighIgss~~G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4678999999998754331 2232 4777777765 5778999999999999998754
No 341
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=65.23 E-value=2.5e+02 Score=33.48 Aligned_cols=285 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred ccCCcccchHHHHHHHHHHhcCCCcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC
Q 001855 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 428 (1004)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 428 (1004)
++....++.+.-+.........-+.+-..+...+..-+.......-.-|+.+...+.-.|.+.+.-+...++..+...|.
T Consensus 28 e~gpn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLe 107 (819)
T KOG1877|consen 28 EDGPNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLE 107 (819)
T ss_pred CCCcccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q ss_pred CCChhHHHHHHHHHHHhhhhhchh------HHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHh-----hcCCcccc
Q 001855 429 DPHPRVRWAAINAIGQLSTDLGPD------LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS-----ENCTPEIL 497 (1004)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~-----~~~~~~~l 497 (1004)
+.++.++..++.++-.|+....+. + ..+.+.+.+.+.+.=.+.....+|.+.+.+|..+. +++....-
T Consensus 108 s~~~~~~ilg~~sf~~F~~i~~d~~sy~~~y-d~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~ 186 (819)
T KOG1877|consen 108 SNNDEMQILGTNSFVKFANIEEDGPSYHRNY-DFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIW 186 (819)
T ss_pred cCCCceeeehhhHHHHHHhhcccCchhhhhh-HHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhh
Q ss_pred cCc-hHHHHHHHHHHhhcC-----------------------ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH
Q 001855 498 TPY-LDGIVSKLLVLLQNG-----------------------KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1004)
Q Consensus 498 ~~~-~~~i~~~l~~~l~~~-----------------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (1004)
.++ ++.+++.+...++.. ...-...+-.|+-.+..... +-..+=..+..++
T Consensus 187 e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~vla~~cl~~l~~~A~-----~g~~iR~~l~pl~ 261 (819)
T KOG1877|consen 187 EPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPKVLAERCLRELLGRAK-----FGTNIRNALKPLL 261 (819)
T ss_pred hhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCcccCcchhHHHHHHHhhcccc-----ccchHHHHHHHHH
Q ss_pred hhcCcccchhhh-HHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhccCcccch
Q 001855 554 VNATDKSNRMLR-AKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM 632 (1004)
Q Consensus 554 ~~~~~~~~~~l~-~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 632 (1004)
.+......|.-- .-++.++..+...+..+.-.++..+++..+-. ..-.....+-.+...+..++......+.|+.
T Consensus 262 ~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~----~~~~~~~~r~~~~iv~~~~~~i~~~~v~ps~ 337 (819)
T KOG1877|consen 262 SHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDN----KKLVAKKPRLGLSIVLVSIALIAATSVGPSV 337 (819)
T ss_pred hccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHh----hcccccCccccchhHHHHHHHHHhcccchHH
Q ss_pred hhhhHHHHHHc
Q 001855 633 SVVMPPLLQSA 643 (1004)
Q Consensus 633 ~~i~~~ll~~~ 643 (1004)
-.++.-++..+
T Consensus 338 l~i~n~l~rhL 348 (819)
T KOG1877|consen 338 LIIFNDLLRHL 348 (819)
T ss_pred HHHHHHHHHHH
No 342
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=64.73 E-value=2.9e+02 Score=32.47 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhc
Q 001855 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (1004)
Q Consensus 228 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 307 (1004)
++-.++++|.....++-+.++..++..+..+....|+.=...+..+++ .+ .+.+..+...|--.|..+.. .
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVN----Kl--GDpqnKiaskAsylL~~L~~---~ 371 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVN----KL--GDPQNKIASKASYLLEGLLA---K 371 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH----hc--CCcchhhhhhHHHHHHHHHh---h
Confidence 344667777777677778899999999999998888764444444444 33 44566676666666666655 2
Q ss_pred cchh
Q 001855 308 APGM 311 (1004)
Q Consensus 308 ~~~~ 311 (1004)
.|++
T Consensus 372 HPnM 375 (988)
T KOG2038|consen 372 HPNM 375 (988)
T ss_pred CCcc
Confidence 5654
No 343
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=63.15 E-value=2.8e+02 Score=31.89 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=47.1
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhh-hHH-hhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 001855 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCRE-AAL-KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS 956 (1004)
Q Consensus 882 ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~-~~~-~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~ 956 (1004)
++-.+...+...+....|-..+..++.+.+..-+ ... +..+.+...+-..|+|+++-+.+.|..+.|..++.++.
T Consensus 480 v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 480 VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 3333333333344444666666666665544322 222 34555555666678899999999999999999998763
No 344
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=62.50 E-value=3.1e+02 Score=32.20 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=40.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhH----HHHHHHHHHHHHccchHHHHHh
Q 001855 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEAT----AQEALELLIELAGTEPRFLRRQ 269 (1004)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~----~~~a~~~L~~l~~~~~~~~~~~ 269 (1004)
..+ +.++-..+++.|..+--.-.........-.+....+..++-++...+..- ...+...|..++...+....-.
T Consensus 320 ~~~-~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~v 398 (696)
T PF14838_consen 320 LHS-DPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAV 398 (696)
T ss_pred cCC-ChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHH
Confidence 444 66776666665544322111112233333344556666666665443332 2355666666666555555555
Q ss_pred HHHHHHH
Q 001855 270 LVDVVGS 276 (1004)
Q Consensus 270 ~~~i~~~ 276 (1004)
+..+++.
T Consensus 399 Lr~LlE~ 405 (696)
T PF14838_consen 399 LRELLEG 405 (696)
T ss_pred HHHHHHH
Confidence 5555554
No 345
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=62.50 E-value=29 Score=34.23 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=60.7
Q ss_pred HHHHHHH-HHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhc
Q 001855 854 EEVFDQV-GEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1004)
Q Consensus 854 ~~~~~~~-~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l 932 (1004)
|.+-+.. ..+++.+.... .. ..+.+.... .+.+.-.|..++-++...+.. .+++.++..+...+
T Consensus 100 W~~~D~~~~~~~~~~~~~~-~~-------~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH-PE-------ALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH-GG-------HHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCT
T ss_pred chhhhHHHHHHHHHHHHhh-HH-------HHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHc
Confidence 3344444 55566665543 22 333444444 344555555555444333333 55677888888888
Q ss_pred CCCChhHHHHHHHHHHHHHhhcccchHHHHHH
Q 001855 933 NDENQDVRQAAVYGLGVCAEFGGSVVKPLVGE 964 (1004)
Q Consensus 933 ~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~ 964 (1004)
.|++..||....|+|..+.+..++...+|+.+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999999999999988887777765
No 346
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=62.43 E-value=1.4e+02 Score=32.06 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCC
Q 001855 897 EERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHP 976 (1004)
Q Consensus 897 ~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~ 976 (1004)
+.....+.++..++.+...--...-+.++..+..++.+.. -+.++.+|...+.-.|..+..+++.+|..|..+.+.+
T Consensus 212 D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~~---a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSKT---AKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccch
Confidence 3444455555555555332212233455666666665422 2345555666666666667777777777776666443
No 347
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=62.12 E-value=91 Score=28.77 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHH-------hcCChhHHHHHHHHHHHHHccchHHHHHhHH
Q 001855 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL-------NNGNEATAQEALELLIELAGTEPRFLRRQLV 271 (1004)
Q Consensus 199 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 271 (1004)
..+-..++.++..++..+.+ ..|.+ .+.+.+.-+. .......+..-+.++..+.+.....+.||..
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE----~~FRP---lF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~ 107 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNE----ATFRP---LFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFS 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHccc----chhHh---HHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556788888888877743 22333 3333222221 1223344555677888888888888899988
Q ss_pred HHHHHHHHhh
Q 001855 272 DVVGSMLQIA 281 (1004)
Q Consensus 272 ~i~~~l~~~~ 281 (1004)
-+++....++
T Consensus 108 ~ll~~~~~~L 117 (153)
T PF08146_consen 108 YLLDNAVDLL 117 (153)
T ss_pred HHHHHHHHHH
Confidence 8888776665
No 348
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.08 E-value=4.3e+02 Score=33.61 Aligned_cols=153 Identities=11% Similarity=0.168 Sum_probs=90.3
Q ss_pred chHhHHHHHHHHHHHHHhcccCC--CCcchHHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhHhhhcc-ccHHHHHHHH
Q 001855 116 SAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVF 189 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~L~~~l~~~---~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l 189 (1004)
+...+|...-.++-.|....+.. ..|+.+++.|-..+... ...+..-+..+|+.++..+-..+. ..+..++..+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl 933 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL 933 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence 34455555556666665543321 36999988888666544 234556678888888876433221 2445555555
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhhcC-----cchH-----------------hHHHhhHHHHHHHHHHHHhcCChhH
Q 001855 190 LNCLTNSNNPDVKIAALNAVINFIQCLTS-----SADR-----------------DRFQDLLPLMMRTLTESLNNGNEAT 247 (1004)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~~~~~~~~-----~~~~-----------------~~~~~~~~~~l~~l~~~l~~~~~~~ 247 (1004)
...-...++..+-..|+..+..+..++.. .++. .....++=.++..+..+..+.-+++
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 54444334666777776666555544321 0000 0111222344455566666778899
Q ss_pred HHHHHHHHHHHHccchHHHHH
Q 001855 248 AQEALELLIELAGTEPRFLRR 268 (1004)
Q Consensus 248 ~~~a~~~L~~l~~~~~~~~~~ 268 (1004)
|..|++.|-++...++..+.+
T Consensus 1014 RngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCCh
Confidence 999999999998877766655
No 349
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=62.03 E-value=2.6e+02 Score=31.11 Aligned_cols=248 Identities=16% Similarity=0.177 Sum_probs=126.5
Q ss_pred ccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHH-HcCCCCCCCHHHH--HHHHHHHHHHHHHHHccCCcH
Q 001855 706 FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAI-EKGLAPGRNESYV--KQLSDFIIPALVEALHKEPDT 782 (1004)
Q Consensus 706 ~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~il~~l~~~~~~~~~~ 782 (1004)
|..-++.+++.+.+.++.+..-++...++-.+|.+-...--.. .++.++. +-.|+ ..++...+..++..-+..++
T Consensus 91 ~q~~lnevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~-d~sYLpE~S~iRaai~f~i~~GkkGpe- 168 (589)
T PF11229_consen 91 FQSRLNEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPT-DFSYLPESSFIRAAIDFLIEAGKKGPE- 168 (589)
T ss_pred HHHHHHHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCC-ccccCcchhHHHHHHHHHHHccccCCc-
Confidence 3344566677777777666566778888888988865432111 1111111 11111 23444455555555554433
Q ss_pred HHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHH
Q 001855 783 EICASMLDSLNECIQISGPL--LDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQV 860 (1004)
Q Consensus 783 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~ 860 (1004)
.+....+...-.-+..+|.. ++|-....++.=+.+. .+ + +++ -
T Consensus 169 ~vpp~lvkvvl~~ia~vgeS~qyPPVNWaalLsPLMRl---nf-----------G------------------eEv---q 213 (589)
T PF11229_consen 169 SVPPSLVKVVLKPIATVGESYQYPPVNWAALLSPLMRL---NF-----------G------------------EEV---Q 213 (589)
T ss_pred cCCHHHHHHHHHHhhhcCCCCCCCCccHHHHhhHHHhc---cc-----------c------------------HHH---H
Confidence 23333444444444445542 3333322222211111 10 0 011 2
Q ss_pred HHHHHHHHHHccc--cchhhHHH-HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-HHhhhHhHHHHHHh-hcCCC
Q 001855 861 GEILGTLIKTFKA--AFLPFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLE-ACNDE 935 (1004)
Q Consensus 861 ~~~l~~l~~~~~~--~~~~~~~~-ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~~~~-~l~~~ 935 (1004)
-.|+...++.... ....++.. +.|.+...+ +...|..-+..+...+++.++. +..|++.++-...+ .-+..
T Consensus 214 ~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sL----s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~ 289 (589)
T PF11229_consen 214 QLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSL----SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPS 289 (589)
T ss_pred HHHHHHHHHhccccccHHHHHHhhcCcchhhhh----hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3445555555543 24444444 334444433 3556667777777777776654 34466633333333 33356
Q ss_pred ChhHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHH
Q 001855 936 NQDVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGK 996 (1004)
Q Consensus 936 ~~~vr~~a~~~lg~l~~~~~--~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~ 996 (1004)
+++++.+|+.+|.+..+.-. +....++-+....++..+..+-+ +.+-+..-..+.|+..
T Consensus 290 ~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~i~--~~eveLYi~vAkCLSE 350 (589)
T PF11229_consen 290 NPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNKIQ--RNEVELYIGVAKCLSE 350 (589)
T ss_pred ChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCccccc--HHHHHHHHHHHHHHhh
Confidence 78999999999999776643 24455566777777777743322 2344555566666554
No 350
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=60.57 E-value=42 Score=31.51 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
++..+..++....-.|.+.+++|...|..+..-+|.. .+++|.. =.++.||++|...|++. ++
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~----aLeLL~~~f~d~~VR~yAV~~L~~~------------sd 100 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQ----ALELLDCNFPDEHVREFAVRCLEKL------------SD 100 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHH----HHHHCCCcCCCHHHHHHHHHHHHhC------------CH
Confidence 5778888888877778888889999888887744543 3455543 35699999999888762 56
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001855 99 HTQSSLKSMLLQSIQLES 116 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~ 116 (1004)
+......-+|+|+|+-|+
T Consensus 101 ~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 101 DELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 666667777888888753
No 351
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.31 E-value=5e+02 Score=33.52 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc
Q 001855 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1004)
Q Consensus 477 v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (1004)
|-.....++.++....+.+ ++++...++....+.....|-.|+..+..+....|+...+.+++++|+|-+++...
T Consensus 1520 v~~~li~~i~~~~~a~~~d-----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDD-----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHHHhhccCChhh-----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 4444555555554333322 44455555555556677899999999999999999999999999999999998652
Q ss_pred CcccchhhhHHHHHHHHHHHhhhChhhhhh
Q 001855 557 TDKSNRMLRAKSMECISLVGMAVGKDKFRD 586 (1004)
Q Consensus 557 ~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~ 586 (1004)
+..+...+-..+..+-..+| +.|..
T Consensus 1595 ----~~~Ve~~~q~li~q~e~~lG-E~l~~ 1619 (1621)
T KOG1837|consen 1595 ----DDEVECLCQKLIRQLEEVLG-EPLQS 1619 (1621)
T ss_pred ----HHHHHHHHHHHHHHHHHHhc-hhhhh
Confidence 22233334444555555566 44443
No 352
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.90 E-value=4e+02 Score=32.30 Aligned_cols=123 Identities=16% Similarity=0.041 Sum_probs=74.9
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh----hchhHHhhhhhhhHHHHHhhcCC-CCChhHHHHHHHHHHHHhhc
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD----LGPDLQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSEN 491 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~~ll~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~ 491 (1004)
+..+|.+...+-++++..|.-|...+.++... ....+.....+.+...+... +. ..++.....--..+..+++.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 56778888888899999999999999988653 22222111223333333332 22 12233333334455666666
Q ss_pred CCcccccCchHH-----HHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHh
Q 001855 492 CTPEILTPYLDG-----IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (1004)
Q Consensus 492 ~~~~~l~~~~~~-----i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 540 (1004)
++.+.+..++.. ++..++..+...........+.++..+....|..|-.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~ 251 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWD 251 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhc
Confidence 655544444333 6667777777664555577889999999999877643
No 353
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.89 E-value=1.4e+02 Score=33.34 Aligned_cols=103 Identities=11% Similarity=0.198 Sum_probs=73.6
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhH
Q 001855 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVL 462 (1004)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll 462 (1004)
+.+..++|..-..-+..+..--.+ -...+..|.+.+++.++.++..|+.+|..+++.++..|.... -..++
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~~~--------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTEGG--------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCccC--------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345567886544433333322222 235778888999999999999999999999999988773222 24777
Q ss_pred HHHHhhcCCC-CChhHHHHHHHHHHHHhhcCCc
Q 001855 463 PALAGAMDDF-QNPRVQAHAASAVLNFSENCTP 494 (1004)
Q Consensus 463 ~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~ 494 (1004)
+.++...+.. ....||..++..|..--+.++.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 7788888774 5678999999999888877764
No 354
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=58.00 E-value=28 Score=28.49 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 001855 898 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS 956 (1004)
Q Consensus 898 ~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~ 956 (1004)
.|-.++-.++.++...+..+-++++.++..+....++ ...|+..+-.+|+..-+...+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 4566778889999998988888999999998887775 778999999999998887654
No 355
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=57.88 E-value=61 Score=31.47 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001855 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1004)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1004)
.++.++.++..-...+.+++......++.+ |..|.+....+...-+.. ....+++.+-..++|+...|+.+.-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~------~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL------DLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHccChHHHHHHHHH
Confidence 445555555434566677776644444443 666666666655544332 2336788888889999999999999
Q ss_pred HHHHHhhhhhc
Q 001855 440 NAIGQLSTDLG 450 (1004)
Q Consensus 440 ~~l~~l~~~~~ 450 (1004)
|+|.+++.+.+
T Consensus 176 WaLrq~~k~~~ 186 (222)
T COG4912 176 WALRQIGKHSN 186 (222)
T ss_pred HHHHHHHhhch
Confidence 99999998443
No 356
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=57.82 E-value=2.2e+02 Score=28.82 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=45.3
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhHhhhccccH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001855 144 LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1004)
Q Consensus 144 ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1004)
+.|+|-..-++. -+..|..++-+++.+.+..+.+...++ .+++|.++..|+.+ +.--+..|.-.+..++..
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD 169 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc
Confidence 356664332222 257889999999999986554433222 46889999999886 777777788777777664
No 357
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.32 E-value=5.1e+02 Score=32.99 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=86.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCChHHhhhhhhhhhhHHH
Q 001855 778 KEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA--ERAKAEDFDAEESELIKEENEQEEE 855 (1004)
Q Consensus 778 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~e~~d~~~~~~~~~~~e~~~~ 855 (1004)
++..++|+..+...+-+++..-|.++++.....++- .++...+..+...+ +++|.+. +++++
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w---~vi~pLLd~~~~q~~~ewngkei---------qkqwt---- 1070 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCW---LVIMPLLDSQPIQNVSEWNGKEI---------QKQWT---- 1070 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHH---HHHHHHhccccccchhhhcchhH---------hhhhh----
Confidence 445678999899999999998888888766655543 33333332111110 1111111 11111
Q ss_pred HHHHHHHHHHHHHHHccccc---------hhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhh------hhHHhh
Q 001855 856 VFDQVGEILGTLIKTFKAAF---------LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCR------EAALKY 920 (1004)
Q Consensus 856 ~~~~~~~~l~~l~~~~~~~~---------~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~------~~~~~~ 920 (1004)
+...-.++.+++.+++.| +..+..++..+.... .+.+++....++.++.++....- ..+..+
T Consensus 1071 --et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~-s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k 1147 (1610)
T KOG1848|consen 1071 --ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLH-SDISPEISLSAIKALQELLFSIIEFGKLNATFTLK 1147 (1610)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hcCChHhHHHHHHHHHHHHHHHhhhccccchHHHH
Confidence 234555666666666543 444555555555544 57778888888888777754421 112222
Q ss_pred hHh-------HHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 001855 921 YET-------YLPFLLEACNDENQDVRQAAVYGLGVCAEFGG 955 (1004)
Q Consensus 921 ~~~-------l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1004)
... +.+..-..-.+....|.+....+|+..+....
T Consensus 1148 ~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~s 1189 (1610)
T KOG1848|consen 1148 INLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLS 1189 (1610)
T ss_pred hhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHH
Confidence 222 22222222223446788888888887776544
No 358
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=56.95 E-value=2.7e+02 Score=29.74 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHH
Q 001855 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1004)
Q Consensus 685 ~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~ 742 (1004)
..+|..|.+.+..+.+..+ ......++.-+.++++. +-.||..|+.-|..++.
T Consensus 38 ~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~-d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDD-DVGIRRQAIKGLPLFCK 90 (460)
T ss_pred hHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhcccccc-chhhHHHHHhccchhcc
Confidence 4567888888888877643 23344455555666654 78999999998887775
No 359
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=56.55 E-value=36 Score=37.44 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcCC
Q 001855 395 HAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD 471 (1004)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~ 471 (1004)
.|++.++..++....- +..-+ ..+.+.+++.|+++...|...+...+..+.-.+.+-- ..+ -..++..+.+.+..
T Consensus 407 ~a~~l~LkS~SrSV~~-LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 407 VAIVLFLKSMSRSVTF-LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHhhHHHHH-HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhhc
Confidence 4556666666654332 11111 2477888889998887777666655555443332211 222 24566666666666
Q ss_pred CCChhHHHHHHHHHHHHhhcCCcc-cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001855 472 FQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1004)
Q Consensus 472 ~~~~~v~~~a~~~l~~l~~~~~~~-~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 532 (1004)
++...|....|.+..+.-++..+ .+.+....=++.++...+++...++++.+..+.++--
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 66788999999999998777533 3333334447788889999999999999999888753
No 360
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=55.33 E-value=48 Score=32.17 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=47.8
Q ss_pred HHHHHhhcCCC-hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001855 380 EQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1004)
Q Consensus 380 ~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1004)
+.+..+..+++ |..|.+.+..+..+.. ..+.+.+++.+-..+.|++..||.+..|+|..++...+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 56677777765 5555554444443333 245677888888888999999999999999999876543
No 361
>PLN03205 ATR interacting protein; Provisional
Probab=54.67 E-value=2.9e+02 Score=29.39 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh-------hccccHHHHHHHHHHhhc
Q 001855 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-------TLTPHLKHLHAVFLNCLT 194 (1004)
Q Consensus 122 ~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~ 194 (1004)
..+.+....+.+.....-....++..|+.++.-.+..+...++++|..+.+++-. .+...+-.++....+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 4556666666654333235578899999999888888888899999999887532 123356666666665543
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHH
Q 001855 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELA 259 (1004)
Q Consensus 195 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~ 259 (1004)
..+...||..|+..+.-++..-......+.|.. ..+++.+.+.++. .-..+++.++.+|.-+.
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~--~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVS--KEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcc--hHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 334789999999888877664321112222321 1233444444432 23457777776665443
No 362
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=54.50 E-value=62 Score=30.28 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001855 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1004)
Q Consensus 21 ~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1004)
+..+..+|....=.+.+.+++|.+.|.++..-+|+. .+++|.. =.++.||++|...|++. +++
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~----aLeLL~~~f~~~~VR~yAV~~L~~~------------sd~ 108 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED----ALELLSPYFTNPVVRKYAVSRLKLA------------SDE 108 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH----HHHHcCccCCCHHHHHHHHHHHHhC------------CHH
Confidence 445555555543345667777888777776634433 3444443 34688888888888762 455
Q ss_pred HHHHHHHHHHHHHhhcc
Q 001855 100 TQSSLKSMLLQSIQLES 116 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~ 116 (1004)
......-.|+|+|+-|.
T Consensus 109 eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 109 ELLLYLLQLVQALKYEN 125 (166)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 66666677788887653
No 363
>PF14961 BROMI: Broad-minded protein
Probab=53.22 E-value=2.3e+02 Score=35.26 Aligned_cols=137 Identities=12% Similarity=0.160 Sum_probs=81.9
Q ss_pred HHHHHHhhcCCC-hhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHh
Q 001855 145 LPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1004)
Q Consensus 145 l~~L~~~l~~~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 223 (1004)
+..+.+.+...+ -++|..|+..|....-..-- -.+.++.+...+..+|.|+ ++.+...+++...+++..-+-....+
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVl-s~E~W~~L~~~L~~~LsDp-D~~is~~~L~f~Ak~fssSpl~~trE 240 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPSDVL-SCESWSVLRENLTDALSDP-DPEISDASLRFHAKMFSSSPLNMTRE 240 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChhhcc-ccccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCchhhhHH
Confidence 344555554444 37888888888765443100 0136888999999999998 99999999999988887643222233
Q ss_pred HHHhhHHHHHHHHHHH----------Hh--cCChhHHHHHHHHHHHHHccchH----HHHHhHHHHHHHHHHhhcC
Q 001855 224 RFQDLLPLMMRTLTES----------LN--NGNEATAQEALELLIELAGTEPR----FLRRQLVDVVGSMLQIAEA 283 (1004)
Q Consensus 224 ~~~~~~~~~l~~l~~~----------l~--~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~i~~~l~~~~~~ 283 (1004)
.+..++..+-..+... +. .++.......++++.++-...|+ +.++++.+|++..+.++..
T Consensus 241 iYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 241 IYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 3333322222111110 00 11222334456667766655555 3467888999988888754
No 364
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=52.59 E-value=3.2e+02 Score=29.21 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHc-cchHHHHHhHH------HHHHHHHHhhc-CCCcc-------hHHHHHHHHH
Q 001855 233 MRTLTESLNNGNEATAQEALELLIELAG-TEPRFLRRQLV------DVVGSMLQIAE-AESLE-------EGTRHLAIEF 297 (1004)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~------~i~~~l~~~~~-~~~~~-------~~vr~~a~~~ 297 (1004)
++.+-..+.+........++++|..++. ..+..-...+. ..++.++..-. ..... .++|...+.+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5566667777777788899999999998 33333222222 12222221111 00000 2899999999
Q ss_pred HHHHHHh
Q 001855 298 VITLAEA 304 (1004)
Q Consensus 298 l~~l~~~ 304 (1004)
|.++.+.
T Consensus 138 ~Lsfl~~ 144 (330)
T PF11707_consen 138 WLSFLSS 144 (330)
T ss_pred HHHHHcc
Confidence 9999985
No 365
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=52.13 E-value=4.4e+02 Score=30.71 Aligned_cols=54 Identities=26% Similarity=0.157 Sum_probs=35.7
Q ss_pred hhHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhh
Q 001855 920 YYETYLPFLLEACNDE--NQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 973 (1004)
Q Consensus 920 ~~~~l~~~~~~~l~~~--~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l 973 (1004)
+...++..+++.+.++ .+..|++|+.=||.++......-..++..++..|...+
T Consensus 343 ~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~v~~~l~~L~~w~ 398 (563)
T PF05327_consen 343 LADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLSTVRSVLSYLCDWL 398 (563)
T ss_dssp HHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4455666666665554 47789999999999998877655566666666666655
No 366
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=51.83 E-value=2.1e+02 Score=31.93 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=73.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH-h
Q 001855 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-N 455 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~ 455 (1004)
+.+.+.+.+++|+..+...+...+...+-.....-..++ ..++..+.+.+..++...|....|.+..+.-.+..... .
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 444455667777766666555554443322222112233 34667777777777778999999999987766544321 2
Q ss_pred hhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhc
Q 001855 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 491 (1004)
.....=+..++...+| +...|+..+...|.++.-.
T Consensus 512 ~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 512 FLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccc
Confidence 2233446778888999 9999999999999998753
No 367
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.40 E-value=3.1e+02 Score=28.71 Aligned_cols=318 Identities=13% Similarity=0.198 Sum_probs=166.3
Q ss_pred CCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhc
Q 001855 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLT 217 (1004)
Q Consensus 139 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~ 217 (1004)
+..+-++-.+. +..+++..+..-++.++..+...-++-+...-. .+++..|.+. .+.++-...+.++.......+
T Consensus 104 ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~---~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE 179 (461)
T KOG4199|consen 104 GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEAM---AVVLKLLALKVESEEVTLLTLQWLQKACIMHE 179 (461)
T ss_pred CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhccccH---HHHHHHHhcccchHHHHHHHHHHHHHHHHHhH
Confidence 34454554444 345666666666777777666655554332222 3344444433 367888888888877665431
Q ss_pred CcchHhHHHhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHccch-----HHHHHhHHH-----HHHHHHHhhcCCCc
Q 001855 218 SSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEP-----RFLRRQLVD-----VVGSMLQIAEAESL 286 (1004)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~-----i~~~l~~~~~~~~~ 286 (1004)
...+.|.+. .+++.+.+.+.. ...++....+..+..+..-.. .....|... +...+...+.. ..
T Consensus 180 --~nrQ~~m~~--~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A-~~ 254 (461)
T KOG4199|consen 180 --VNRQLFMEL--KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA-GI 254 (461)
T ss_pred --HHHHHHHHh--hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc-cC
Confidence 122222221 234444444432 233566667777776643110 001112221 22222222221 12
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccCCCCCCccccCCcccchHHHHHHHHH
Q 001855 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1004)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~ 366 (1004)
++++-......+..++-..+ +++...+ ..=+..++..+.+..+ ...+..+.+++..|.
T Consensus 255 dp~~L~~l~~tl~~lAVr~E----~C~~I~e--~GGl~tl~~~i~d~n~----------------~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDE----ICKSIAE--SGGLDTLLRCIDDSNE----------------QGNRTLAKTCLSLLR 312 (461)
T ss_pred CccHHHHHHHHHHHHHHHHH----HHHHHHH--ccCHHHHHHHHhhhch----------------hhHHHHHHHHHHHHH
Confidence 34444445555555544211 1111000 0113344444443221 123456667777777
Q ss_pred HhcCCCcchHHHH-----HHHHHh-hc-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhhCC-CC-ChhHHH
Q 001855 367 IALGGNTIVPVAS-----EQLPAY-LA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFR-DP-HPRVRW 436 (1004)
Q Consensus 367 ~~~~~~~~~~~l~-----~~l~~~-l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~-d~-~~~vr~ 436 (1004)
...|.+..-..++ +.+... +. +.++.+-+.++.++..++-..++.-...++. .-...++.++ +| ...|+.
T Consensus 313 alAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQr 392 (461)
T KOG4199|consen 313 ALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQR 392 (461)
T ss_pred HHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHH
Confidence 6666554444332 222222 22 3678888888888888887776644444433 2234445552 33 678999
Q ss_pred HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 001855 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1004)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~ 489 (1004)
.+|+.+..++..-.. ....++..=++.++..-.. .++.++..|-.+|..+-
T Consensus 393 nac~~IRNiv~rs~~-~~~~~l~~GiE~Li~~A~~-~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 393 NACNMIRNIVVRSAE-NRTILLANGIEKLIRTAKA-NHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHhhhh-ccchHHhccHHHHHHHHHh-cCccHHHHHHHHHHhcC
Confidence 999999999865433 3255666667777776666 67888888888887763
No 368
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=50.34 E-value=1.2e+02 Score=27.86 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
++..+..++..+.-.+.+.++++...|..+..-+|.. .++.|.. -.++.+|+.|...|++ +++
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~----aL~LL~~~~~~~~vr~yAv~~L~~------------~~~ 100 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED----ALELLSPKYPDPVVRQYAVRVLES------------ASD 100 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH----HHHHcCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 4567777787777778888888888888876644443 3444443 3569999999988866 256
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001855 99 HTQSSLKSMLLQSIQLES 116 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~ 116 (1004)
+........|+|+|.-|+
T Consensus 101 ~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 101 DELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 666777778888887653
No 369
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=49.13 E-value=4.6e+02 Score=29.98 Aligned_cols=115 Identities=10% Similarity=0.155 Sum_probs=78.4
Q ss_pred HHhHHHHH-HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhc
Q 001855 413 VKNLEQVL-SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1004)
Q Consensus 413 ~~~l~~i~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 491 (1004)
..++..++ ..++.+..|..+.+|..+...++.++...|.-+. + -..+...--.|.| .+..||......+..++..
T Consensus 269 ~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~-k--~~~lry~GW~LSD-n~~~vRl~v~Kil~~L~s~ 344 (740)
T COG5537 269 RDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFR-K--ILGLRYNGWSLSD-NHEGVRLLVSKILLFLCSR 344 (740)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHH-h--hhccccccccccc-chHHHHHHHHHHHHHHHhc
Confidence 34455555 4556778899999999999999998877665431 1 1133333335778 7889999999999999876
Q ss_pred CCc-ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001855 492 CTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1004)
Q Consensus 492 ~~~-~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 531 (1004)
.+. +.++.+++.....++..+......||..++..+..+-
T Consensus 345 ~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 345 IPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 542 3456677777777777665544448877777665543
No 370
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=49.06 E-value=2.6e+02 Score=27.07 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-CCcchHHHHHHHhhcCCChh--HHHHHHHHHHHhhhhHhh
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDSVK--LQESAFLIFAQLSQYIGD 176 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-~~~~~ll~~L~~~l~~~~~~--~r~~al~~l~~l~~~~~~ 176 (1004)
....+-..+++... |.-..+|..++.++..+.....+. ...| -.+.|...+..+... ....+-.++..++....-
T Consensus 4 ~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 4 LVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 33334444444444 366789999999999998544331 1222 345566655433211 011122333333322111
Q ss_pred hccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001855 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1004)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~ 256 (1004)
..+...++.-+....... +..+.+.+..+|..++...+. .......++..++..+.... .+..+....++++.
T Consensus 82 --~~y~~~ll~Glv~S~G~~-tesl~~~s~~AL~~~~~~~~~--~~~~~~~v~~~l~~il~~~~--~~dRv~vP~l~tl~ 154 (193)
T PF12612_consen 82 --PEYRYSLLSGLVVSAGGL-TESLVRASSAALLSYLRELSD--SPEELEQVLSDLLSILKENL--RNDRVVVPLLKTLD 154 (193)
T ss_pred --HHHHHHHHhHHHhcCCCC-chhHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhC--CCCCeeecHHHHHH
Confidence 124555666555555554 677777888888888764311 23333444444444444322 24445556666666
Q ss_pred HHHcc
Q 001855 257 ELAGT 261 (1004)
Q Consensus 257 ~l~~~ 261 (1004)
.+.+.
T Consensus 155 ~Ll~~ 159 (193)
T PF12612_consen 155 FLLSS 159 (193)
T ss_pred HHHhC
Confidence 65543
No 371
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=48.94 E-value=1.5e+02 Score=28.68 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCCh--hHHHHHHHHHHHHhhcC
Q 001855 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENC 492 (1004)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~--~v~~~a~~~l~~l~~~~ 492 (1004)
.+..++..+++..-++-.+||..|..++..+...-.+.+ ++++ -.+.+.+.+.. +.. .....+..++..++.-.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL 79 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLL 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHh
Confidence 345666666666667778999999999999884332211 1222 22344444433 111 01222333444444333
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001855 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1004)
Q Consensus 493 ~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (1004)
. +..|...++..+.......+..+...+..++-....... .-..-+..++..+..++++
T Consensus 80 ~---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~-~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 80 D---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS-DSPEELEQVLSDLLSILKE 138 (193)
T ss_pred c---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Confidence 3 336777788888777766666665555555555443221 1112334455555555543
No 372
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=47.91 E-value=1.4e+02 Score=28.49 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
.++.+..+|.+..=.+....+.+...|..+..-+|.. .+++|.. -.++.||++|...|++ +++
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~----aL~LL~~~~~~~~Vr~yAV~~L~~------------~~d 105 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPED----ALELLSPKFPDPFVRAYAVERLES------------ASD 105 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHH----HHHHhCccCCCHHHHHHHHHHHHh------------CCH
Confidence 3455555554433345555667777777776544433 3334432 3467888888877755 255
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001855 99 HTQSSLKSMLLQSIQLE 115 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~ 115 (1004)
+........|+|+|.-|
T Consensus 106 ~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 106 EELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 66666667777777654
No 373
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=47.44 E-value=3.1e+02 Score=27.61 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch-------------------------HhHHHhhHHHHHHHH
Q 001855 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD-------------------------RDRFQDLLPLMMRTL 236 (1004)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~~l 236 (1004)
+..+-..++..+.+. ++.||..+++.+..++........ ...+..--..++..|
T Consensus 41 ~~~lK~~Il~~~~~~-~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~L 119 (239)
T PF11935_consen 41 MNELKDRILSLWDSE-NPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRL 119 (239)
T ss_dssp HHHHHHHHHHGGGSS-SHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444555666667776 899999999999998876431100 001111111344455
Q ss_pred HHHHhcC--ChhHHHHHHHHHHHHHccchHHHHHhHHHHH
Q 001855 237 TESLNNG--NEATAQEALELLIELAGTEPRFLRRQLVDVV 274 (1004)
Q Consensus 237 ~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~ 274 (1004)
...+.++ +......++.+|..++...|.+....++.+.
T Consensus 120 l~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll 159 (239)
T PF11935_consen 120 LDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALL 159 (239)
T ss_dssp HHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555443 4567778888888888888876554444333
No 374
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.53 E-value=4.8e+02 Score=29.52 Aligned_cols=235 Identities=15% Similarity=0.136 Sum_probs=134.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhcHHHHH---HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc--------hhHHh
Q 001855 387 AAPEWQKHHAALIALAQIAEGCAKVMV---KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG--------PDLQN 455 (1004)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~~~~~~---~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~ 455 (1004)
...+...+++....+..+.+.....+. +..-.++..++-.-.+....|-.+.+...-.+.+.+. .-+ .
T Consensus 257 ~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~f-r 335 (559)
T KOG2081|consen 257 AGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIF-R 335 (559)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHh-H
Confidence 456677788777777777765443332 2223344555555566677777777766655555331 112 5
Q ss_pred hhhhhhHHHHHhhcCCCC-----------ChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHH
Q 001855 456 QFHPQVLPALAGAMDDFQ-----------NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGAL 524 (1004)
Q Consensus 456 ~~~~~ll~~l~~~l~~~~-----------~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~ 524 (1004)
+|+..++..+....+=.+ -..-|......+..+.--.+.. .-+..+...+.. .+.+.+.-++++
T Consensus 336 py~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~---e~lk~~~~~l~e--~~~~We~~EAaL 410 (559)
T KOG2081|consen 336 PYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD---ECLKQMYIRLKE--NNASWEEVEAAL 410 (559)
T ss_pred HHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHcc--CCCchHHHHHHH
Confidence 677888888877665311 1234666666666665555532 122222222222 345677888899
Q ss_pred HHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-HhcCCC
Q 001855 525 TALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQM 603 (1004)
Q Consensus 525 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~~~ 603 (1004)
.++..++..+. +.-..++|-+++.+.+. ++..++|..++..+|.+..-+.. -...+..+.+.++. ++.
T Consensus 411 F~l~~~~~~~~----~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~~--~p~~le~v~~~~~~~~~~--- 479 (559)
T KOG2081|consen 411 FILRAVAKNVS----PEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVEQ--HPELLEPVLRYIRQGLQL--- 479 (559)
T ss_pred HHHHHHhccCC----ccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHhhh---
Confidence 98888887665 33456666666666542 23344777777777777543321 11123334444444 222
Q ss_pred CCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHHHH
Q 001855 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1004)
Q Consensus 604 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~ 641 (1004)
......+..++..++..+.....++++.+...+..
T Consensus 480 ---~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~ 514 (559)
T KOG2081|consen 480 ---KRLASAAALAFHRICSACRVQMTCLIPSLLELIRS 514 (559)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 12556667788888888888877777766654433
No 375
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=46.27 E-value=1.7e+02 Score=30.83 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCC-hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH-
Q 001855 389 PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH-PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA- 466 (1004)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~- 466 (1004)
.....|.||+.++.+...+..+.-...+..++| .-.+.+ +......+.+|-..-..... .+|-.-.-..++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~----~~~~~~~~~~~~nl~~~Ll~~~~~~~~---dpy~~wfAa~il~ 122 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIP----SYASGNSDDPIANLLTALLDYDSDLSL---DPYRCWFAAVILM 122 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSS----TT--SS--SSSS-HHHHHT------SS----HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc----cCCCCcccchhhHHHHHHHHhhccccC---CHHHHHHHHHHHH
Confidence 467899999999999998766533333332222 211111 00111112221111111111 112111222222
Q ss_pred hhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHhHhhhHhhHh--
Q 001855 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYYD-- 543 (1004)
Q Consensus 467 ~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-- 543 (1004)
..+.+ ++.-+..++.. ...-...+ +.....++.+...|...+. +.+++++...+..+......+...+..|+.
T Consensus 123 hll~d--n~~~Ke~al~V-~~~~~~~g-e~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~ 198 (312)
T PF04869_consen 123 HLLRD--NPEAKEQALRV-TEGDESSG-EEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEG 198 (312)
T ss_dssp HHHTT---HHHHHHHTT---EE--STT-S--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCST
T ss_pred HHHhc--CHHHHHHHHcc-cCCCCCCC-CCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCc
Confidence 23333 55555444443 11111122 2233556666666655554 556788888888877777666666666764
Q ss_pred hhhHHHHHH
Q 001855 544 AVMPFLKAI 552 (1004)
Q Consensus 544 ~i~~~l~~~ 552 (1004)
.-++.|...
T Consensus 199 s~l~~Li~~ 207 (312)
T PF04869_consen 199 SNLQSLIEF 207 (312)
T ss_dssp THHHHHHHH
T ss_pred chHHHHHHH
Confidence 356666665
No 376
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=46.12 E-value=14 Score=22.10 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHh
Q 001855 939 VRQAAVYGLGVCAE 952 (1004)
Q Consensus 939 vr~~a~~~lg~l~~ 952 (1004)
||..|+++||.+-.
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999998766
No 377
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=46.05 E-value=3.4e+02 Score=27.66 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHccc----cchhh
Q 001855 803 LDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKA----AFLPF 878 (1004)
Q Consensus 803 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~----~~~~~ 878 (1004)
++.+.+..+.+.+...|... +| ....+.+...+..+++.+-. .+...
T Consensus 89 ls~~~i~~ig~~l~~~L~~~---rH--------------------------rGAfe~~~~~f~~lc~~l~~~~~~~l~~L 139 (255)
T PF10350_consen 89 LSPDQIEKIGELLIEQLLEI---RH--------------------------RGAFESVYPGFTALCRRLWSSNNPELSEL 139 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhc---cc--------------------------ccHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 67777877777777766542 22 12344566666666666552 22222
Q ss_pred HHHHHHhHhhhhcCC-CC---HHHHHHHHH-HHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCCh--------hHHHHHHH
Q 001855 879 FDELSSYLTPMWGKD-KT---AEERRIAIC-IFDDVAEQCREAALKYYETYLPFLLEACNDENQ--------DVRQAAVY 945 (1004)
Q Consensus 879 ~~~ll~~l~~~l~~~-~~---~~~r~~al~-~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~--------~vr~~a~~ 945 (1004)
-..++..++..++.. .. ...|...+- ++..++..-+..-.+.++..+..+++..+.+.. .-+-+|+-
T Consensus 140 P~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlN 219 (255)
T PF10350_consen 140 PEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALN 219 (255)
T ss_pred HHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHH
Confidence 233555556655433 11 344555443 344444443333225666777777776654332 46777777
Q ss_pred HHHHHHhhcc--cchHHHHHHHHHHHHHhhcC
Q 001855 946 GLGVCAEFGG--SVVKPLVGEALSRLNVVIRH 975 (1004)
Q Consensus 946 ~lg~l~~~~~--~~~~~~~~~~l~~L~~~l~~ 975 (1004)
+|..++.-.. +.+.+|+...+.+=+..+..
T Consensus 220 iLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 220 ILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 8888787653 56778888877766665543
No 378
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=46.04 E-value=1.8e+02 Score=28.03 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHH
Q 001855 892 KDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEA 965 (1004)
Q Consensus 892 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~ 965 (1004)
.+.+.-.|..+..++...+.. ..+.+.++..+-..+.|++.-|+....|+|..+.+..++.+.+|+...
T Consensus 115 ~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 115 KSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred hCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 455555666665555544444 235677788888888889999999999999999999777666665443
No 379
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=45.85 E-value=96 Score=26.89 Aligned_cols=70 Identities=20% Similarity=0.019 Sum_probs=45.7
Q ss_pred HHHHHhhcC-CC-ChhHHHHHHHHHHHHHhhccc---chHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHH
Q 001855 925 LPFLLEACN-DE-NQDVRQAAVYGLGVCAEFGGS---VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGK 996 (1004)
Q Consensus 925 ~~~~~~~l~-~~-~~~vr~~a~~~lg~l~~~~~~---~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a~~~ 996 (1004)
+..++..|. +. +++....|....-.+++..+. .+..+..+++..|..+=. .-..+.....|.||+.|++-
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~--~f~~~~Fe~~R~~alval~v 79 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQN--KFDIENFEELRQNALVALVV 79 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH-----TT--TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccc--cCCccCHHHHHHHHHHHHHH
Confidence 445566665 33 688888999999999999887 888999999999888643 22334678999999888764
No 380
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=45.82 E-value=78 Score=30.29 Aligned_cols=80 Identities=24% Similarity=0.216 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
+++.+..++..+.-.+.+..+.+...|..+..-+|.. .+++|.. -.++.||++|...|++ +++
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~----AL~LL~~~f~~~~VR~yAv~~L~~------------~~d 106 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED----ALELLSPNFPDPFVRQYAVRRLES------------LSD 106 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH----HHHCTSTT---HHHHHHHHHHHCT------------S-H
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH----HHHHHHhhccHHHHHHHHHHHHHH------------cCc
Confidence 4556666666554456666777777777777644433 2344433 2357888888877744 356
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001855 99 HTQSSLKSMLLQSIQLE 115 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~ 115 (1004)
+........|+|+|.-|
T Consensus 107 ~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 107 EELLFYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHHHHHHHHGGGS
T ss_pred hHHHHHHHHHHHHheec
Confidence 66666777777777764
No 381
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.27 E-value=1.7e+02 Score=32.71 Aligned_cols=94 Identities=21% Similarity=0.124 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhh--HhhhhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhh
Q 001855 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY--YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1004)
Q Consensus 501 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~ 578 (1004)
-++.+..|.+-+++.++.+...|+..|..++..||..|-.. -..+++-++....... -...+|.+++..|.....+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~--~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKP--RDLKVREKILELIDTWQQA 113 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCC--cchhHHHHHHHHHHHHHHH
Confidence 34788888888888888899999999999999999766421 1355666666655421 4567899999999999888
Q ss_pred hCh-hhhhhhHHHHHHHHH
Q 001855 579 VGK-DKFRDDAKQVMEVLM 596 (1004)
Q Consensus 579 ~~~-~~~~~~~~~i~~~l~ 596 (1004)
++. ....|.+..+...+.
T Consensus 114 f~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 114 FCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred ccCCCCcchhHHHHHHHHH
Confidence 874 455555555555544
No 382
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=44.51 E-value=1.9e+02 Score=27.09 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001855 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 20 d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
++..+..+|....+-+.+...++..-|..+..-+|... +++|.. =.++.||+.|...|++. ++
T Consensus 37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~A----LeLL~~~f~d~~VR~yAV~~L~~~------------~d 100 (169)
T cd00869 37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLIA----LELLLPKFPDQEVRAHAVQWLARL------------SN 100 (169)
T ss_pred CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHHH----HHHcCCcCCChHHHHHHHHHHHhC------------CH
Confidence 45555666655432233445556666666655344332 333322 23466777777776552 44
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001855 99 HTQSSLKSMLLQSIQLE 115 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~ 115 (1004)
+......-.|+|+|+-|
T Consensus 101 deL~~yLpQLVQaLkyE 117 (169)
T cd00869 101 DELLDYLPQLVQALKFE 117 (169)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 55555556666777654
No 383
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=44.41 E-value=3.6e+02 Score=27.48 Aligned_cols=159 Identities=15% Similarity=0.223 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHhhcH-------H-HHHHhHHHHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhc----hhHHhhh
Q 001855 391 WQKHHAALIALAQIAEGCA-------K-VMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLG----PDLQNQF 457 (1004)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~-------~-~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 457 (1004)
|+.-..+...++.++..++ . .-...+..+-..++..| +-.|.-.-..+..++..+++.+. +.+ ...
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l-~~L 139 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPEL-SEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchH-HHh
Confidence 5555555555555554321 0 01123444444444433 33455555666666666666553 222 223
Q ss_pred hhhhHHHHHhhcCCCC-Ch---hHHHHH--HHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCCh--------hHHHHH
Q 001855 458 HPQVLPALAGAMDDFQ-NP---RVQAHA--ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--------MVQEGA 523 (1004)
Q Consensus 458 ~~~ll~~l~~~l~~~~-~~---~v~~~a--~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~--------~vr~~a 523 (1004)
...-+..+++.+.. . .. ..|..| -.++..++..-+.. -.+.++..+..|+.....+.. ..+..|
T Consensus 140 P~~WL~~~l~~i~~-~~~~~~~iTRRSAGLP~~i~aiL~ae~~~-~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHA 217 (255)
T PF10350_consen 140 PEEWLDELLEAIES-KGQQKLSITRRSAGLPFLILAILSAEPSN-SRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHA 217 (255)
T ss_pred HHHHHHHHHHHHhc-ccccccccccccCcHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHhcCCcccccccccchHHHHH
Confidence 33344444444444 2 11 233322 23445555544322 127788888888888766543 367778
Q ss_pred HHHHHHHHHH--hHhhhHhhHhhhhHHHHHH
Q 001855 524 LTALASVADS--SQEHFQKYYDAVMPFLKAI 552 (1004)
Q Consensus 524 ~~~l~~l~~~--~~~~~~~~~~~i~~~l~~~ 552 (1004)
+.++..+... ++....+|+...+..-++.
T Consensus 218 lNiLr~if~ds~L~~~~~~yi~~~l~lai~~ 248 (255)
T PF10350_consen 218 LNILRAIFRDSKLSEDVSPYIEDALILAIKG 248 (255)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 8888777654 4455667766655444443
No 384
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=44.10 E-value=5.7e+02 Score=29.63 Aligned_cols=181 Identities=9% Similarity=0.069 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc--CCCCChhHHHHHHHHHHHHhhcC
Q 001855 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNFSENC 492 (1004)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l--~~~~~~~v~~~a~~~l~~l~~~~ 492 (1004)
.+..++..++..=......+|..|+.++..++....+.+..+.+....-+.+..- ..........---+++..++..-
T Consensus 279 ~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld 358 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD 358 (661)
T ss_pred HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC
Confidence 3344444444433445778999999999988877665442222222222222211 11011111111122222222110
Q ss_pred C---cccccCchHHHHHHHHHHhhcCChhHHH-----HHHHHHHHHHHHhH------hhhHhhHhhhhHHHHHHHhhcCc
Q 001855 493 T---PEILTPYLDGIVSKLLVLLQNGKQMVQE-----GALTALASVADSSQ------EHFQKYYDAVMPFLKAILVNATD 558 (1004)
Q Consensus 493 ~---~~~l~~~~~~i~~~l~~~l~~~~~~vr~-----~a~~~l~~l~~~~~------~~~~~~~~~i~~~l~~~l~~~~~ 558 (1004)
. -..---|+.++--.|-..+...+.+-.. .-+.|+--.++..+ ..+.|..-.++..+..+++-...
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT 438 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPT 438 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCc
Confidence 0 0000134444444455555444322111 12233332222222 23344444555555555555556
Q ss_pred ccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001855 559 KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1004)
Q Consensus 559 ~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1004)
+...++|-+++..|..+++..| .|.|..+-+++.+-.
T Consensus 439 ~qy~PLRlhcir~Li~Ls~ssg--~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 439 PQYYPLRLHCIRSLISLSRSSG--TFIPLSPLLVEMLKS 475 (661)
T ss_pred ccchhHHHHHHHHHHHHHhhcC--ceeecHHHHHHHHHH
Confidence 6788899998888888888877 577776666665554
No 385
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=42.98 E-value=71 Score=24.95 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhh--hhHHHHHhhcCCCCChhHHHHHHHHHHHHhhc
Q 001855 435 RWAAINAIGQLSTDLGPDLQNQFHP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1004)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 491 (1004)
.++|+|+++.++..-.. -.+++ .+++.+++.....+...+|-.|..+|+-+...
T Consensus 4 lKaaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 46899999999864221 23333 68888888876557888999999999988754
No 386
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=41.75 E-value=1.9e+02 Score=24.93 Aligned_cols=85 Identities=8% Similarity=0.064 Sum_probs=48.9
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHH
Q 001855 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1004)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~ 509 (1004)
+.+.+...+.+++... .+...++..+.+.+.. ..+.-+..++..+.+++.+++...-..+...+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~----------~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENR----------KHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4455555555544432 3456677777777776 5667788999999999998764322122222234444
Q ss_pred HHhhcCChhHHHHHHH
Q 001855 510 VLLQNGKQMVQEGALT 525 (1004)
Q Consensus 510 ~~l~~~~~~vr~~a~~ 525 (1004)
......++.+|.....
T Consensus 86 ~~~~~~~~~~r~kl~r 101 (114)
T cd03562 86 DAYEKVDEKTRKKLER 101 (114)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 4444555555544333
No 387
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=41.27 E-value=4.7e+02 Score=27.92 Aligned_cols=155 Identities=16% Similarity=0.240 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhHhh----hccccHHHHHHHHHHhhc----CCCC--------hHHHHHHHHH
Q 001855 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD----TLTPHLKHLHAVFLNCLT----NSNN--------PDVKIAALNA 208 (1004)
Q Consensus 145 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~----~~~~~~~~l~~~l~~~l~----~~~~--------~~vr~~a~~~ 208 (1004)
++.+...+++........+++.+..++...+. ++...++--.+.+...+. .... +.+|...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 67777778777777777899999988884332 211111111122222221 1101 2899999999
Q ss_pred HHHHHHhhcCcchHhHHHhhHH--HHHHHHHHHHhcCChhHHHHHHHHHHHHHccch---HHHH--HhHHHHHHHHHHhh
Q 001855 209 VINFIQCLTSSADRDRFQDLLP--LMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLR--RQLVDVVGSMLQIA 281 (1004)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~--~~~~~i~~~l~~~~ 281 (1004)
+..++.... .....+++. .++..++..+..+++++....+++|.+-+-..+ .... -.-...+..+..+.
T Consensus 138 ~Lsfl~~~~----~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGD----PELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCC----HHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh
Confidence 998888642 222222221 235566666666677777777877775332111 1110 00012222222222
Q ss_pred cCC--CcchHHHHHHHHHHHHHHH
Q 001855 282 EAE--SLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 282 ~~~--~~~~~vr~~a~~~l~~l~~ 303 (1004)
... .....++..+.+++..+|.
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhc
Confidence 211 1234677777777777776
No 388
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=41.11 E-value=1.2e+02 Score=28.98 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++...++..+..+.|+ .+.+.+.+..+.++..-|..++. .++..-|..-...+..++..|..+....
T Consensus 73 ~va~lLK~fLReLP~pLi~~--~~~~~~~~~~~~~~~~~r~~~l~---~li~~LP~~n~~~L~~L~~~L~~V~~~s---- 143 (182)
T cd04381 73 TVASLLKQYLRELPEPLLTK--ELMPRFEEACGRPTEAEREQELQ---RLLKELPECNRLLLAWLIVHMDHVIAQE---- 143 (182)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHcCCCCHHHHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45567777777777766554 45566666666666555554444 5666666544445666777777766433
Q ss_pred chhhhhHHHHHHHHHHH
Q 001855 981 PENLMAYDNAVSALGKI 997 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l 997 (1004)
..+.+...|.+.|+|--
T Consensus 144 ~~NkM~~~NLAivfaP~ 160 (182)
T cd04381 144 LETKMNIQNISIVLSPT 160 (182)
T ss_pred cccCCCHHHHHHHhCcc
Confidence 35889999999998743
No 389
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=40.75 E-value=67 Score=22.38 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN 134 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~ 134 (1004)
..+++|+.+++.|.. .++..|..+..+|+++.+.
T Consensus 4 ~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 4 NLEYLKNVLLQFLES-REPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHCC
Confidence 567999999999987 4678888888899888764
No 390
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=39.80 E-value=59 Score=19.81 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHH
Q 001855 938 DVRQAAVYGLGVC 950 (1004)
Q Consensus 938 ~vr~~a~~~lg~l 950 (1004)
.||..|+++||.+
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5899999999987
No 391
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=39.61 E-value=3.1e+02 Score=25.39 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHH-HHHhHhhhhcCCC-CHHHHHHHHHHHHHHHHHhhhhHHhh-hHhHHHHHHhh
Q 001855 855 EVFDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCREAALKY-YETYLPFLLEA 931 (1004)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~-ll~~l~~~l~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~-~~~l~~~~~~~ 931 (1004)
.+...+..++..|-.+ |---|..+.. ++..+..++.... +.++-..|++.+..++...+....-. -+--++.++..
T Consensus 32 ~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHH
Confidence 3445566666666664 3323433322 4444455553333 56777889999999888754322111 11225678888
Q ss_pred cCCCChhHHHHHHHHHHHHHhhcccc
Q 001855 932 CNDENQDVRQAAVYGLGVCAEFGGSV 957 (1004)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~~ 957 (1004)
|+..++.++.+|+..+..+....++.
T Consensus 111 Lq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 89999999999999999999888753
No 392
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=39.16 E-value=1.1e+02 Score=29.53 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh----HHhhhHhHHHHHHhhcC--CCChhHHHHHHHHHHHHHhhcccchHHHH--HHHHH
Q 001855 896 AEERRIAICIFDDVAEQCREA----ALKYYETYLPFLLEACN--DENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALS 967 (1004)
Q Consensus 896 ~~~r~~al~~l~~l~~~~~~~----~~~~~~~l~~~~~~~l~--~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~~l~ 967 (1004)
.+...+++..+..++.+ ++. +..+++-.+=.++.... .+....|-.+...+|.++++..+.+-.++ .+++|
T Consensus 114 snRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 114 SNRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hhHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 33345677777666655 221 12233322223333333 24467999999999999999887666654 68999
Q ss_pred HHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhh
Q 001855 968 RLNVVIRHPNALQPENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 968 ~L~~~l~~~~~~~~~~~~~~~na~~a~~~l~~~ 1000 (1004)
+..+++... .+.-+--|+-.+++|+..
T Consensus 193 LcLrIme~g------SElSktvaifI~qkil~d 219 (315)
T COG5209 193 LCLRIMELG------SELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHHHHHHhh------hHHHHHHHHHHHHHHhcc
Confidence 999988554 345566677777777653
No 393
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=39.11 E-value=3.3e+02 Score=25.53 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh-
Q 001855 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL- 114 (1004)
Q Consensus 36 ~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~- 114 (1004)
.+.++--.+.=..+.+ +|... +.++.-. +-.++.-..-+..+|++ |..++++. .++.|..
T Consensus 28 ~~ek~llW~~R~~l~~-~p~aL-~~~L~sv-~W~~~~e~~e~~~lL~~---------W~~i~~~~-------aLeLL~~~ 88 (166)
T cd00870 28 DEEKDLIWKFRFYLTN-NKKAL-TKFLKSV-NWSDEQEVKQALELMPK---------WAKIDIED-------ALELLSPY 88 (166)
T ss_pred HHHHHHHHHhHHHHhh-CcHHH-HHHhhhC-CCCCHHHHHHHHHHHhc---------CCCCCHHH-------HHHHcCcc
Confidence 3444444443233445 67653 4444332 43444433444445544 98887753 3455543
Q ss_pred cchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCC
Q 001855 115 ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS 156 (1004)
Q Consensus 115 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~ 156 (1004)
.++..||..+...+..+ +.+....++|+|.|.++-..
T Consensus 89 f~~~~VR~yAV~~L~~~-----sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 89 FTNPVVRKYAVSRLKLA-----SDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhcc
Confidence 25778999888888753 22567778888888887543
No 394
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=38.87 E-value=5.4e+02 Score=27.87 Aligned_cols=263 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHc-C--------------
Q 001855 687 EKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEK-G-------------- 751 (1004)
Q Consensus 687 ~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~-------------- 751 (1004)
.+...+..++++-..+......|+.++..-+-+.+ ...+.+..+....++|.++..+....-- +
T Consensus 44 ~~~~~lq~~s~~k~~m~~k~~~Y~g~~~k~i~p~l-~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~ll 122 (373)
T PF14911_consen 44 KRYQQLQTLSEGKSQMVTKLLEYFGDFEKWIKPYL-KSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLL 122 (373)
T ss_pred HHhhHhHhhHHHHHHHHHHHHHHHHHHHHHcCCcc-ccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhc
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHH---ccCCcHHHHHHHHHHHHHHHHHhCCCCCHHH--------------HH
Q 001855 752 -----LAPGRNESYVKQLSDFIIPALVEAL---HKEPDTEICASMLDSLNECIQISGPLLDEGQ--------------VR 809 (1004)
Q Consensus 752 -----~~~~~~~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------~~ 809 (1004)
..+...+..+.+.+..++|.+++.+ ....|+=.-..+-+.+.+=+..+.+..+... -.
T Consensus 123 Lp~~l~~~k~l~~~l~~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~ 202 (373)
T PF14911_consen 123 LPTVLQQDKPLPPALLQAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNE 202 (373)
T ss_pred ccccccCCCCCChHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH----ccccchhhHHHHHHh
Q 001855 810 SIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKT----FKAAFLPFFDELSSY 885 (1004)
Q Consensus 810 ~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~ll~~ 885 (1004)
.+.+.+.+.+....-..+.+ ....-...+..++..+.+. ......-.+..++|.
T Consensus 203 ~l~~~il~~i~~~fl~~~~~----------------------~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~ 260 (373)
T PF14911_consen 203 ELRKFILQVIRSNFLEFKGS----------------------APPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPS 260 (373)
T ss_pred HHHHHHHHHHHHHHhcCCCC----------------------CCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHH
Q ss_pred HhhhhcCCC-CHHHHHHHHHHHHHHHHHhh-hhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHH
Q 001855 886 LTPMWGKDK-TAEERRIAICIFDDVAEQCR-EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVG 963 (1004)
Q Consensus 886 l~~~l~~~~-~~~~r~~al~~l~~l~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~ 963 (1004)
+++.+---. .+.+|..+...+..+++.+. ..-...-.++.+.+.+..++--..-...-+..|..++...++.+.+.+|
T Consensus 261 lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~Lip 340 (373)
T PF14911_consen 261 LLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISLIP 340 (373)
T ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 001855 964 EALSRLNVV 972 (1004)
Q Consensus 964 ~~l~~L~~~ 972 (1004)
.+=+.+...
T Consensus 341 ~i~q~l~~~ 349 (373)
T PF14911_consen 341 TIRQSLKDS 349 (373)
T ss_pred HHHHHHHHH
No 395
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=37.90 E-value=7e+02 Score=28.93 Aligned_cols=202 Identities=12% Similarity=0.164 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhh
Q 001855 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1004)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~ 513 (1004)
+-...+..+..++-.+-. + ......++..+...-+. ....+|..|.-++..++.......+.+.+....-..+.-..
T Consensus 258 ~~~~~L~~l~~l~~~~~~-f-~k~lk~liK~~V~vWst-ge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk 334 (661)
T KOG2256|consen 258 VLAFTLRHLTVLVPFLAT-F-PKLLKKLIKAVVHVWST-GEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSK 334 (661)
T ss_pred HHHHHHHHHHHHHHHHhh-H-HHHHHHHHHHHheeecc-CCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC
Confidence 334444444444433321 1 23445555555555555 67789999999999999887765555555444333332211
Q ss_pred cCCh-------hHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcCcccchhhh-HHHHHHHHHHHh----hh-C
Q 001855 514 NGKQ-------MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLR-AKSMECISLVGM----AV-G 580 (1004)
Q Consensus 514 ~~~~-------~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~-~~a~~~l~~l~~----~~-~ 580 (1004)
-.+. ..+..+.+.++.=....=..---|+.++--+|.+.+.....++...+. .+=+.|+...++ +. +
T Consensus 335 ~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~ 414 (661)
T KOG2256|consen 335 FVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGS 414 (661)
T ss_pred CCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111 112222222111011110111236666666666666553322211111 112333333322 22 2
Q ss_pred hhhhhhhHHHHHHHHHHHhc-CCCCCCCchhhHHHHHHHHHHhHhccCcccchhhhhHHH
Q 001855 581 KDKFRDDAKQVMEVLMSLQG-SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1004)
Q Consensus 581 ~~~~~~~~~~i~~~l~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l 639 (1004)
.+...|.+.+++++.+.... ......-|+|-+++..+..++...|- |-|..|.++..+
T Consensus 415 ~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml 473 (661)
T KOG2256|consen 415 ASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEML 473 (661)
T ss_pred HhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHH
Confidence 34567777777777776322 11112346888899999989887754 777777655544
No 396
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.30 E-value=7.2e+02 Score=28.86 Aligned_cols=155 Identities=12% Similarity=0.174 Sum_probs=84.3
Q ss_pred HHHHHHhhc-chHhHHHHHHHHHHHHHhcc-------cCCCCcchHHHHHH----HhhcCCChhHHHHHHHHHHHhhhhH
Q 001855 107 MLLQSIQLE-SAKSISKKLCDTVSELASNI-------LPENGWPELLPFMF----QCVSSDSVKLQESAFLIFAQLSQYI 174 (1004)
Q Consensus 107 ~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~-------~~~~~~~~ll~~L~----~~l~~~~~~~r~~al~~l~~l~~~~ 174 (1004)
.+-+.+... ....++.+.|+++..|.... .....|.+.+..|. +++.. +.....++-....+.-..
T Consensus 133 ~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS 210 (552)
T PF14222_consen 133 SLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVS 210 (552)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcC
Confidence 344444443 34559999999888875422 21237877665554 44433 344444555555444443
Q ss_pred h-hhccccHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh---cCcchHhHHHhhHHHHHHHHHHHHh----cCCh
Q 001855 175 G-DTLTPHLK-HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL---TSSADRDRFQDLLPLMMRTLTESLN----NGNE 245 (1004)
Q Consensus 175 ~-~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~l~----~~~~ 245 (1004)
+ +.|..++. .++..+..-+++. ..|..++.|+..++-.+ ...+..+.-...+..+++.++..-+ ..|.
T Consensus 211 ~~e~F~~~W~~~~i~~~~~klKdk---~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~ 287 (552)
T PF14222_consen 211 PKEFFLSNWLPSLIESLISKLKDK---ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDP 287 (552)
T ss_pred cHHHHHHHHHHHHHHHHHhhcCCh---hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCCh
Confidence 3 33444455 4555555555553 78889999998765432 2223334444455566666553211 1233
Q ss_pred hHHHHHHHHHHHHHccchHHH
Q 001855 246 ATAQEALELLIELAGTEPRFL 266 (1004)
Q Consensus 246 ~~~~~a~~~L~~l~~~~~~~~ 266 (1004)
......++++.-++..++++.
T Consensus 288 ~~~~~lv~ii~~I~~~~~df~ 308 (552)
T PF14222_consen 288 EPLNPLVQIIRFIGYKHLDFA 308 (552)
T ss_pred hhhhhHHHHHHhHhhhCcchH
Confidence 455556666766666666543
No 397
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=36.70 E-value=2.7e+02 Score=26.21 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh-
Q 001855 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL- 114 (1004)
Q Consensus 36 ~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~- 114 (1004)
.+.|.---+.=..+.+ +|... +.++.-..+..+..+++ +-.+|+. |..++++. .++.|..
T Consensus 21 ~~ek~llW~~R~~~~~-~p~aL-p~~L~s~~~w~~~~~~e-~~~LL~~---------W~p~~p~~-------ALeLL~~~ 81 (169)
T cd00869 21 TEDKDLLWEKRLYCTN-EPNAL-PLVLASAPSWDWANLMD-VYQLLHQ---------WAPLRPLI-------ALELLLPK 81 (169)
T ss_pred HHHHHHHHHHHHHHhh-CcHHH-HHHHHhcccCcHHHHHH-HHHHHhC---------CCCCCHHH-------HHHHcCCc
Confidence 3444444333234445 67654 55554332222344443 2233332 99888763 3455543
Q ss_pred cchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCC
Q 001855 115 ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS 156 (1004)
Q Consensus 115 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~ 156 (1004)
-++..||..+...+..+-. +..-.++|.|.|.++-..
T Consensus 82 f~d~~VR~yAV~~L~~~~d-----deL~~yLpQLVQaLkyE~ 118 (169)
T cd00869 82 FPDQEVRAHAVQWLARLSN-----DELLDYLPQLVQALKFEL 118 (169)
T ss_pred CCChHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHccc
Confidence 2567789887777775322 355677888888876543
No 398
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=35.86 E-value=1.3e+02 Score=29.51 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++..+++..++.+.|+ .+.+.+++..+.....-+......+-.++...|..-+..+..++..|..+... +
T Consensus 75 ~vA~lLK~fLReLPePLip~--~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~----s 148 (207)
T cd04379 75 VITGVLKDYLRELPEPLITP--QLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSN----S 148 (207)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc----c
Confidence 35667777788877766552 33445555443322221222222344556665554344455666666666543 3
Q ss_pred chhhhhHHHHHHHHHHHHhhhhc
Q 001855 981 PENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
+.|.+...|.+.++|--+...++
T Consensus 149 ~~NkMt~~NLAivf~P~Ll~~~~ 171 (207)
T cd04379 149 ERNKMTPQNLAVCFGPVLMFCSQ 171 (207)
T ss_pred cccCCChHHhHHhhccccCCCCc
Confidence 46889999999999876665554
No 399
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=35.82 E-value=3.4e+02 Score=25.60 Aligned_cols=97 Identities=18% Similarity=0.285 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh
Q 001855 35 SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL 114 (1004)
Q Consensus 35 ~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~ 114 (1004)
..+.+.---+.=..+.+ +|... +.++.-+ +..++.-..-+-.+|++ |..++++. .++.|..
T Consensus 20 ~~eek~llW~~R~~~~~-~p~aL-~~~l~sv-~w~~~~~v~e~~~lL~~---------W~~i~~~~-------aLeLL~~ 80 (171)
T cd00872 20 TEEDKELLWKLRHECRK-KPQAL-PKLLLSV-KWNKRDDVAQMYQLLKR---------WPKLKPEQ-------ALELLDC 80 (171)
T ss_pred CHHHHHHHHHHHHHHhh-CcHHH-HHHHhhC-CCCCHHHHHHHHHHHHC---------CCCCCHHH-------HHHHCCC
Confidence 34444444444334555 67653 5555433 33444433444445543 99888763 3555543
Q ss_pred -cchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC
Q 001855 115 -ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD 155 (1004)
Q Consensus 115 -~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~ 155 (1004)
.+++.||..+...+..+.. +....++|+|.|.++-.
T Consensus 81 ~f~d~~VR~yAV~~L~~~sd-----~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 81 NFPDEHVREFAVRCLEKLSD-----DELLQYLLQLVQVLKYE 117 (171)
T ss_pred cCCCHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHcc
Confidence 2578899988888775322 45667788888887654
No 400
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.33 E-value=6.5e+02 Score=27.81 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=41.2
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001855 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1004)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1004)
..+++.++..++..-.+.+..++ -++.+.++..+-. ....-.-...-..++..+.|.+..+|..+-.+|.-++++
T Consensus 589 a~~i~tlieLL~a~QeDDEfV~Q--iiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 589 AKLIDTLIELLQACQEDDEFVVQ--IIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred cccHHHHHHHHHhhcccchHHHH--HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 45666666665554444443332 2344444443311 100000011224567788999999999998888887765
No 401
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.23 E-value=5.1e+02 Score=26.53 Aligned_cols=125 Identities=16% Similarity=0.207 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc-ccHHHHHHHHHHhhcCCCC
Q 001855 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNN 198 (1004)
Q Consensus 120 vr~~~~~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~ 198 (1004)
.....|..|+.+++. ...+++-..+....+..-. ..-..+..++..+.+.+. .+..+++..+...+.++ .
T Consensus 131 ~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~fr----~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~-~ 201 (262)
T PF14225_consen 131 ECIEIAEALAQVAEA----QGLPNLARILSSYAKGRFR----DKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG-P 201 (262)
T ss_pred HHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC-c
Confidence 344677888888853 3455555444444433221 122334444444444432 35577788888889887 8
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccc
Q 001855 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1004)
Q Consensus 199 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 262 (1004)
.-+|..+++.|..++...+-. ...-+.++..+.+.++.+ .-..|+++|..++...
T Consensus 202 ~w~~~~~L~iL~~ll~~~d~~------~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 202 PWLRRKTLQILKVLLPHVDMR------SPHGADLISPLLRLLQTD---LWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHHHHHhccccCC------CCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhc
Confidence 899999999999999876321 113445666677666543 3456777776665543
No 402
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=33.15 E-value=1.7e+02 Score=28.62 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++..+++..+..+.++ .+.+.++...+..+.+.|-. .+..++...|..-+..+..++..|..+... +
T Consensus 88 ~va~lLK~fLReLPePLi~~--~~y~~~i~~~~~~~~~~ri~---~l~~li~~LP~~n~~~L~~L~~~L~~V~~~----s 158 (203)
T cd04374 88 TITSALKTYLRNLPEPLMTY--ELHNDFINAAKSENLESRVN---AIHSLVHKLPEKNREMLELLIKHLTNVSDH----S 158 (203)
T ss_pred HHHHHHHHHHHcCCCCcCCH--HHHHHHHHHHhCCCHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHHHHHHHh----c
Confidence 45667777777777765542 45566666666656555544 344666666654444456666666666543 3
Q ss_pred chhhhhHHHHHHHHHHHHh
Q 001855 981 PENLMAYDNAVSALGKICQ 999 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~ 999 (1004)
..+.+...|.+.++|--+.
T Consensus 159 ~~NkM~~~NLAivf~P~Ll 177 (203)
T cd04374 159 KKNLMTVSNLGVVFGPTLL 177 (203)
T ss_pred ccccCCHHHHHHHhccccC
Confidence 4578888898888875443
No 403
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=33.08 E-value=1.2e+02 Score=25.57 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhH--hHHHHHHhhcC--CCChhHHHHHHHHHHHHHhhccc
Q 001855 899 RRIAICIFDDVAEQCREAALKYYE--TYLPFLLEACN--DENQDVRQAAVYGLGVCAEFGGS 956 (1004)
Q Consensus 899 r~~al~~l~~l~~~~~~~~~~~~~--~l~~~~~~~l~--~~~~~vr~~a~~~lg~l~~~~~~ 956 (1004)
|...+.+++-++...... ...+. .=+|.+++... +.+|.+|+.|++|+-.++...++
T Consensus 3 K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 455566777766554332 22111 12677777644 57899999999999999998764
No 404
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=32.03 E-value=1.2e+03 Score=29.82 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=43.9
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
+++..+..--..++.|....+.++..+...... . ......++...+-.+.+ ++..||..|...|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~-~-~~~~~~LL~L~Lfklg~-~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREY-P-PCPFWELLNLVLFKLGD-ESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCC-C-CCCHHHhHHHHHHhhcC-CcHHHHHHHHHHHHHHHH
Confidence 444333333334577776666666665432211 1 12355788888888888 899999999998887653
No 405
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.49 E-value=1.9e+02 Score=26.16 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=24.4
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1004)
+.+-..+...|.++++.|+..|+.|+-.+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 345566778889999999999999988764
No 406
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=31.38 E-value=8.1e+02 Score=28.96 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--c-HHHHHHhHHHHHHHHHhhCCCCChhHHHH
Q 001855 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG--C-AKVMVKNLEQVLSMVLNSFRDPHPRVRWA 437 (1004)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~--~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 437 (1004)
.++..+...+++.+++.+|..-...+..+..+... . +..+.+.++.++... .....|.||..
T Consensus 103 ~~v~~~~~~~q~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~~---~e~~~Pqvr~D 167 (759)
T KOG1104|consen 103 EFVEYMIEELQESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDAA---IEENVPQVRRD 167 (759)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHH---HhhcCcchhhh
Confidence 45555666667788888998888888888877732 1 223333344333332 23446777753
No 407
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.17 E-value=2e+02 Score=23.25 Aligned_cols=36 Identities=8% Similarity=0.179 Sum_probs=22.8
Q ss_pred HcCCChHHHHHHHHH---hcCCC---hHHHHHHHHHHHHhhh
Q 001855 16 ILGPDSAPFETLISH---LMSTS---NEQRSEAELLFNLCKQ 51 (1004)
Q Consensus 16 ~~~~d~~~l~~ll~~---~~s~~---~~~r~~A~~~L~~~~~ 51 (1004)
.++|+.+.+.+.+.. +.+.+ .++|++|++....+.+
T Consensus 7 ~~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 7 LMNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred chhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 345666666665444 33322 4789999998877665
No 408
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=29.50 E-value=2.3e+02 Score=27.52 Aligned_cols=91 Identities=11% Similarity=-0.038 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++...++..+..+.|+ .+.+.+++..+-+++..|..+ +-.++...|..=+.-+..++..|..+... +
T Consensus 72 ~va~lLK~fLReLPePLip~--~~y~~~~~~~~~~~~~~~~~~---l~~ll~~LP~~n~~~L~~L~~~L~~V~~~----s 142 (196)
T cd04387 72 AIAGTLKLYFRELPEPLFTD--ELYPNFAEGIALSDPVAKESC---MLNLLLSLPDPNLVTFLFLLHHLKRVAER----E 142 (196)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHHcCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHhc----c
Confidence 34567777788877765552 334444554444566655544 34556666554333456666666666543 3
Q ss_pred chhhhhHHHHHHHHHHHHhh
Q 001855 981 PENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~ 1000 (1004)
+.+.+...|.+.++|--+..
T Consensus 143 ~~NkM~~~NLAivf~P~Llr 162 (196)
T cd04387 143 EVNKMSLHNLATVFGPTLLR 162 (196)
T ss_pred cccCCCHHHHHHHHccccCC
Confidence 46889999999999865543
No 409
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=9.9e+02 Score=27.88 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCch
Q 001855 903 ICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPE 982 (1004)
Q Consensus 903 l~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~ 982 (1004)
++++|.-+-.+|+.+.. +-.+..|-..++-.++.+|+.-=.++|-+....|+ -+++..|.+..-+.
T Consensus 622 ~avLgiAliAMgeeig~--eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~------ 687 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGS--EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDG------ 687 (878)
T ss_pred chhhhhhhhhhhhhhhh--HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCc------
Confidence 45555555555554432 22344444555556666666666666666655554 23444444443332
Q ss_pred hhhhHHHHHHHHH
Q 001855 983 NLMAYDNAVSALG 995 (1004)
Q Consensus 983 ~~~~~~na~~a~~ 995 (1004)
+..+.-||+.++|
T Consensus 688 D~eva~naIfamG 700 (878)
T KOG2005|consen 688 DLEVAMNAIFAMG 700 (878)
T ss_pred chHHHHHHHHHhc
Confidence 4566666666665
No 410
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=28.35 E-value=4.4e+02 Score=23.63 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh--hhhHHH
Q 001855 389 PEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPA 464 (1004)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~ 464 (1004)
.+...++-...-++.++..... ..++. ++++.++.++..++..+..-+.-.|..++ .+.-..+++ ..=+|.
T Consensus 29 t~~eakeqv~ANLANFAYDP~N--ys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC---~d~~n~~~I~ea~g~pl 103 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPIN--YSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC---LDKTNAKFIREALGLPL 103 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcch--HHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc---cChHHHHHHHHhcCCce
Confidence 4444444444444444433221 23333 46788889999998887776655544444 332212222 223456
Q ss_pred HHhhcCCCCChhHHHHHHHHHHHHhhc
Q 001855 465 LAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1004)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~~l~~l~~~ 491 (1004)
++..+++ +...+...|+.++..+...
T Consensus 104 ii~~lss-p~e~tv~sa~~~l~~l~~~ 129 (173)
T KOG4646|consen 104 IIFVLSS-PPEITVHSAALFLQLLEFG 129 (173)
T ss_pred EEeecCC-ChHHHHHHHHHHHHHhcCc
Confidence 6777888 6667777777777777643
No 411
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.34 E-value=1.4e+03 Score=29.34 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001855 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1004)
Q Consensus 249 ~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1004)
.-++-+|.+++-...+.+..+++.++..++-.+ ++..+-|+..|-+++..+..
T Consensus 934 qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~l--DH~~~~V~e~a~~lL~~Li~ 986 (1120)
T PF14228_consen 934 QLALIFLVDLAVEPDEDLREHLPLLLHVIFVLL--DHYTPLVQEQARELLVNLIH 986 (1120)
T ss_pred HHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcc--cCCChHHHHHHHHHHHHHHH
Confidence 346677778877777888899999998887766 45678888888777776654
No 412
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=28.09 E-value=7.1e+02 Score=26.01 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=45.3
Q ss_pred HHHHHHhhCCCCChh-HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 001855 419 VLSMVLNSFRDPHPR-VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1004)
Q Consensus 419 i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 490 (1004)
++..+...++..++. .-..||.-++.+++..|....--.--..=..+++.++. ++++|+-.|..++..++.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh-~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINH-DDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcC-CCchhhHHHHHHHHHHHh
Confidence 556666666655554 44567777888887665432000011233445677777 899999999999988764
No 413
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=27.82 E-value=1.6e+03 Score=29.88 Aligned_cols=112 Identities=9% Similarity=0.110 Sum_probs=69.7
Q ss_pred CcchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001855 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1004)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1004)
+.+++.++.....++.+++..++.-+...+..+........ -+.++..++..+.+.+..-..+|+.+|..++...+.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~---qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC---QQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 47888999999999999999999999988888887765422 233444444444333444446889999988876555
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 001855 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1004)
Q Consensus 452 ~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~ 489 (1004)
.+ .+ +...+..++..+.+-....+| .....|..+.
T Consensus 507 ~l-~~-fa~~l~giLD~l~~Ls~~qiR-~lf~il~~La 541 (1426)
T PF14631_consen 507 EL-QP-FATFLKGILDYLDNLSLQQIR-KLFDILCTLA 541 (1426)
T ss_dssp HH-HH-THHHHHGGGGGGGG--HHHHH-HHHHHHHHHH
T ss_pred HH-HH-HHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHh
Confidence 44 33 345555666666652223343 3455555554
No 414
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=27.71 E-value=5e+02 Score=24.12 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHH-HHHHHHHH
Q 001855 161 ESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTLTE 238 (1004)
Q Consensus 161 ~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~ 238 (1004)
..++.++..+.+.---.+...-+.++.-+....+.+ .+..+...|+..|..++..- ...+..+-+ .-++.+..
T Consensus 35 a~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S-----~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 35 AYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNS-----PKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC-----HHHHHHHhccCCHHHHHH
Confidence 334555555555311112223344444444444443 25778888888888888742 111111111 12334455
Q ss_pred HHhcCChhHHHHHHHHHHHHHccchH
Q 001855 239 SLNNGNEATAQEALELLIELAGTEPR 264 (1004)
Q Consensus 239 ~l~~~~~~~~~~a~~~L~~l~~~~~~ 264 (1004)
.++..+++++..++.++..+....++
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 56667888999999988888765543
No 415
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=27.59 E-value=2.5e+02 Score=23.70 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHH--hHHHHHHHHHhh--CCCCChhHHHHHHHHHHHhhhhhc
Q 001855 394 HHAALIALAQIAEGCAKVMVK--NLEQVLSMVLNS--FRDPHPRVRWAAINAIGQLSTDLG 450 (1004)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~--~l~~i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1004)
|...+..++.++..++..... .+. -+|.++.. +.+.+|.+|+.|.+++..+++.-+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~-Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELG-GIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcC-ChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 445566777777666542211 111 24555543 467799999999999999998654
No 416
>PF14961 BROMI: Broad-minded protein
Probab=27.38 E-value=1.7e+02 Score=36.24 Aligned_cols=72 Identities=7% Similarity=0.138 Sum_probs=57.3
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhccc-CCCCcchHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhh
Q 001855 106 SMLLQSIQLESAKSISKKLCDTVSELASNIL-PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1004)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~-~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1004)
+.+++.|.......+|..+.+.+..+--.+. ..+.|+.+...|...+.++++.....+++......+..+-.
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 5566677666788999999888887643333 23699999999999999999999999999998887765544
No 417
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=27.37 E-value=1.3e+02 Score=21.02 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc
Q 001855 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN 134 (1004)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~ 134 (1004)
..+++|+.+++.|.. .+.. |..+..+|+++.+.
T Consensus 3 n~eYLKNVll~fl~~-~e~~-r~~ll~vi~tlL~f 35 (46)
T smart00755 3 NFEYLKNVLLQFLTL-RESE-RETLLKVISTVLQL 35 (46)
T ss_pred cHHHHHHHHHHHhcc-Ccch-HHHHHHHHHHHhCC
Confidence 357899999999987 3444 88888888888764
No 418
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=27.24 E-value=4.7e+02 Score=23.65 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhh---hHh
Q 001855 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---FQK 540 (1004)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~---~~~ 540 (1004)
.+++.|+- +...++.+|..||.. . ..-+.+++.++..+++.+...|...+..+..++..+... ..+
T Consensus 12 ~~L~~L~a-S~qSi~kaa~fAlk~--~--------~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 12 QLLRRLNA-SQQSIQKAAQFALKN--R--------DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHcch-hHHHHHHHHHHHHHc--c--------ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 34455555 445667777777765 2 233667888888888888889999999999988765432 345
Q ss_pred hHhhhhHHHHHHH
Q 001855 541 YYDAVMPFLKAIL 553 (1004)
Q Consensus 541 ~~~~i~~~l~~~l 553 (1004)
|.+.+-.-|..++
T Consensus 81 Yv~~l~~dL~~Iv 93 (139)
T PF12243_consen 81 YVSMLQRDLPRIV 93 (139)
T ss_pred hHHHHHHHHHHHH
Confidence 6555544444443
No 419
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=27.07 E-value=5e+02 Score=24.61 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcc
Q 001855 39 RSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES 116 (1004)
Q Consensus 39 r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~ 116 (1004)
...+...|..+..-+|... ++.+.. ..++.+|+.|...|++ .+++......-+|+|+|.-+.
T Consensus 55 ~~~~l~~Ll~W~pi~p~~A----Lell~~~y~~~~~Vr~yAvr~L~~------------~~~e~l~~YlpQLVQaLryd~ 118 (175)
T cd00871 55 NSPDLKYLLYWAPVSPVQA----LSLFTPQYPGHPLVLQYAVRVLES------------YPVETVFFYIPQIVQALRYDK 118 (175)
T ss_pred HHHHHHHHcCCCCCCHHHH----HHHhCcccCCCHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHhccc
Confidence 3344455556665444432 233322 3468899999888866 256666677777888888754
No 420
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=26.70 E-value=2.7e+02 Score=26.21 Aligned_cols=94 Identities=18% Similarity=0.102 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++..+++..+..+.| ...++.+++..+..+...+..+ +-.++...+..-+..+..++..|..+....
T Consensus 58 ~va~~lK~~Lr~Lp~pli~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~---- 128 (174)
T smart00324 58 DVAGLLKLFLRELPEPLIP--YELYEEFIEAAKVEDETERLRA---LRELISLLPPANRATLRYLLAHLNRVAEHS---- 128 (174)
T ss_pred HHHHHHHHHHHhCCCccCC--HHHHHHHHHHHhCCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHhcc----
Confidence 4555677777777665544 2344555555555555544444 334555555554555667777777776433
Q ss_pred chhhhhHHHHHHHHHHHHhhhhc
Q 001855 981 PENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
+.+.+..+|.+.|+|-.+...++
T Consensus 129 ~~n~M~~~nLa~~f~P~l~~~~~ 151 (174)
T smart00324 129 EENKMTARNLAIVFGPTLLRPPD 151 (174)
T ss_pred ccCCCCHHHHHHHHhcccCCCCc
Confidence 35789999999999987766553
No 421
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.50 E-value=4.8e+02 Score=24.81 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 001855 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1004)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~ 489 (1004)
..+..+...++.|+..+...-.+...--..+..+..+..++.. ++..+|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4566778888888888776432111011256778889999988 88999999999888775
No 422
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.42 E-value=9.9e+02 Score=27.10 Aligned_cols=214 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc-----
Q 001855 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDP-------HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM----- 469 (1004)
Q Consensus 402 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l----- 469 (1004)
|.+.......+...+.+.+..+...++.+ +..|.+.+..-+...+...+.- +.|...++..|-.+|
T Consensus 18 gdLFsV~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~si--E~YaAaLVDlLd~cL~hnl~ 95 (851)
T KOG3723|consen 18 GDLFSVDDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESI--EKYAAALVDLLDSCLEHNLR 95 (851)
T ss_pred cccccCChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhccCc
Q ss_pred ----CCCCChhHHHHHHHHHHHHhhcC-CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhh
Q 001855 470 ----DDFQNPRVQAHAASAVLNFSENC-TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDA 544 (1004)
Q Consensus 470 ----~~~~~~~v~~~a~~~l~~l~~~~-~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 544 (1004)
+| .++.-..-|...+.+++-+. .++.+...++.-+..|......-.+...+..-.+....+..+.++-+.....
T Consensus 96 p~g~kd-ed~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~s 174 (851)
T KOG3723|consen 96 PFGKKD-EDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKS 174 (851)
T ss_pred cCCCCC-CCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHH
Q ss_pred hhHHHHHHHhhcCcccchhhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHh
Q 001855 545 VMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 624 (1004)
Q Consensus 545 i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 624 (1004)
++..=..+ +..++.+...-+ +.+.|+++.++.+|.+ .+..-+..+.....-+.+.-
T Consensus 175 iLSgn~~L----------------LrvlS~Vye~~P-~~i~PhlP~l~~lL~q-------~~p~~~~ll~~l~~LI~Qk~ 230 (851)
T KOG3723|consen 175 ILSGNTML----------------LRVLSAVYEKQP-QPINPHLPELLALLSQ-------LEPEQYHLLRLLHVLIKQKQ 230 (851)
T ss_pred HhccchHH----------------HHHHHHHHhcCC-CccCcccHHHHHHhcC-------CCHHHHHHHHHHHHHHHhcc
Q ss_pred ccCcccchhhhhHHHHHH
Q 001855 625 GQDFLPYMSVVMPPLLQS 642 (1004)
Q Consensus 625 ~~~~~~~l~~i~~~ll~~ 642 (1004)
.+.+..++|.+.-.+...
T Consensus 231 ~evL~~ciP~L~g~l~ds 248 (851)
T KOG3723|consen 231 LEVLQKCIPFLIGHLKDS 248 (851)
T ss_pred HHHHHHHHHHHHHHhccc
No 423
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=26.21 E-value=3e+02 Score=27.00 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHH
Q 001855 862 EILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQ 941 (1004)
Q Consensus 862 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~ 941 (1004)
+++..++...++.+...-..+.+.+.....++.-...|...+..+...=.. ..+.++..+...++|++.-|+.
T Consensus 96 d~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~-------~~~~l~~~~~~~~~d~e~fI~K 168 (208)
T cd07064 96 DTVDSLAKVVGGILLADYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT-------DTDLLFEIILANLGSKEFFIRK 168 (208)
T ss_pred HHHHHHHHHHhHHHHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHhCCChHHHHHH
Q ss_pred HHHHHHHHHHhhcccchHHHHHH
Q 001855 942 AAVYGLGVCAEFGGSVVKPLVGE 964 (1004)
Q Consensus 942 ~a~~~lg~l~~~~~~~~~~~~~~ 964 (1004)
..-|+|-++.+..++.+.+|+.+
T Consensus 169 AiGW~LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 169 AIGWALREYSKTNPDWVRDFVAA 191 (208)
T ss_pred HHHHHHHHHhccCHHHHHHHHHH
No 424
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=26.09 E-value=2.4e+02 Score=26.96 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++...++..+..+.|+ .+.+.+++..+..+...|.. .+..++...|..-+..+..++..|..+... +
T Consensus 71 ~va~llK~yLreLP~pLi~~--~~~~~~~~~~~~~~~~~~i~---~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~----~ 141 (184)
T cd04385 71 DVADVLKRFLRDLPDPLLTS--ELHAEWIEAAELENKDERIA---RYKELIRRLPPINRATLKVLIGHLYRVQKH----S 141 (184)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHhCCCHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHHHHHHHc----c
Confidence 45567778888877765552 34555565555555444433 445666666654444556666666666543 3
Q ss_pred chhhhhHHHHHHHHHHHHhh
Q 001855 981 PENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~ 1000 (1004)
+.+.+...|.+.++|--+..
T Consensus 142 ~~NkM~~~nLaiv~~P~ll~ 161 (184)
T cd04385 142 DENQMSVHNLALVFGPTLFQ 161 (184)
T ss_pred cccCCChHHhhhhhccccCC
Confidence 45788999999988865544
No 425
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=25.96 E-value=2.6e+02 Score=27.02 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++...++..+..+.++ .+.+.+++..+..+++.|..++ ..++...|..=+..+..++..|..+... +
T Consensus 73 ~va~lLK~flReLP~pLi~~--~~~~~~~~~~~~~~~~~~~~~l---~~~l~~LP~~n~~~L~~L~~~L~~v~~~----s 143 (194)
T cd04372 73 VITGALKLYFRDLPIPVITY--DTYPKFIDAAKISNPDERLEAV---HEALMLLPPAHYETLRYLMEHLKRVTLH----E 143 (194)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHhcCCHHHHHHHH---HHHHHHCCHHHHHHHHHHHHHHHHHHhc----c
Confidence 35567777777777665542 3455566655555555554443 3455555543333345555555555433 3
Q ss_pred chhhhhHHHHHHHHHHHHhhhh
Q 001855 981 PENLMAYDNAVSALGKICQLFL 1002 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~~~ 1002 (1004)
+.+.+...|.+.++|--+...|
T Consensus 144 ~~NkM~~~NLaivf~P~Ll~~~ 165 (194)
T cd04372 144 KDNKMNAENLGIVFGPTLMRPP 165 (194)
T ss_pred ccCCCCHHHHHHHHhcccCCCC
Confidence 4578888898888886654443
No 426
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=25.75 E-value=1.8e+02 Score=27.77 Aligned_cols=78 Identities=22% Similarity=0.164 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcc
Q 001855 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1004)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 495 (1004)
.+..+|.++....-.++.-...+...+..+. +.. ....++.+-.... ++.||..|+..|..+ +.+
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~---~~~-----~~~aL~LL~~~~~---~~~Vr~yAV~~L~~~----~d~ 106 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWA---PLD-----PEDALELLSPKFP---DPFVRAYAVERLESA----SDE 106 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCC---CCC-----HHHHHHHhCccCC---CHHHHHHHHHHHHhC----CHH
Confidence 3455565555555556554444444544433 211 2233333333333 478999888887664 445
Q ss_pred cccCchHHHHHHH
Q 001855 496 ILTPYLDGIVSKL 508 (1004)
Q Consensus 496 ~l~~~~~~i~~~l 508 (1004)
.+..|++.+++.|
T Consensus 107 ~l~~yLpQLVQaL 119 (184)
T smart00145 107 ELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 5677887777766
No 427
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.15 E-value=5.6e+02 Score=23.81 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC---CCcchHHHHHHHhh
Q 001855 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLPFMFQCV 152 (1004)
Q Consensus 76 ~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~L~~~l 152 (1004)
++..+|.+.++.+ +..+..|-+.+++.+....+..+ .....+++.+++.. |. +.|..+. .++..+
T Consensus 37 LG~~IL~~~fk~h---------~~~r~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~-p~~vle~~~~l~-~~ld~l 104 (158)
T PF14676_consen 37 LGIQILLELFKVH---------EMIRSEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKA-PLTVLECSSKLK-ELLDYL 104 (158)
T ss_dssp HHHHHHHHHHHH----------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH--HHHHS-S-HHHH-GGGGGT
T ss_pred HHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHC-hHHHHHHHHHHH-HHHHHH
Confidence 8888888888876 33445555556665554322222 23456777776642 21 2232222 122222
Q ss_pred cCCChhHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001855 153 SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1004)
Q Consensus 153 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1004)
..=.......-+.++.-++.... ...+.++-.+.+.|-.. +...|..|+.-+
T Consensus 105 ~~lp~~~a~~ll~Al~PLi~~s~----~lrd~lilvLRKamf~r-~~~~R~~Av~Gf 156 (158)
T PF14676_consen 105 SFLPGDVAIGLLRALLPLIKFSP----SLRDSLILVLRKAMFSR-ELDARQMAVNGF 156 (158)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-H----HHHHHHHHHHHHHTT-S-SHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHccc-cHHHHHHHHHHh
Confidence 21122232223333332332211 13456666777777765 777777776543
No 428
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=24.98 E-value=1.4e+03 Score=28.22 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001855 765 SDFIIPALVEALHKEPDTEICASMLDSLNECIQI 798 (1004)
Q Consensus 765 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 798 (1004)
+..+...+++++..+.|-+++.-++.-+-+.++.
T Consensus 647 ~~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~ 680 (1697)
T KOG3687|consen 647 YSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRY 680 (1697)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHhHHHHhH
Confidence 3445566677777788888887777766666554
No 429
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.97 E-value=5.7e+02 Score=23.85 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=49.1
Q ss_pred HHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHH
Q 001855 864 LGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAA 943 (1004)
Q Consensus 864 l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a 943 (1004)
+..+.+..-..|.-++...+..|... .+=.+..|...+..|++-+..+....... + |+..-...|
T Consensus 64 ~e~v~~~~l~~f~~Q~~~tmeel~~~--~~~~~~~k~~~LasLaDsf~K~vaaskr~----l---------Pets~LavA 128 (165)
T PF08822_consen 64 IEDVARQMLEDFVVQYQATMEELKEN--EDMPPQEKVELLASLADSFSKMVAASKRV----L---------PETSELAVA 128 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHHHhhc----C---------chHHHHHHH
Confidence 44444444444444444444443321 23367788888888888776655433222 2 222233456
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHH
Q 001855 944 VYGLGVCAEFGGSVVKPLVGEALSRLNV 971 (1004)
Q Consensus 944 ~~~lg~l~~~~~~~~~~~~~~~l~~L~~ 971 (1004)
...+..++....+.+.++++.++.+|-+
T Consensus 129 ~~vl~~l~~fv~e~~P~h~~af~eiLep 156 (165)
T PF08822_consen 129 MEVLELLAAFVQERYPQHLAAFLEILEP 156 (165)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6667766666555555555544444433
No 430
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.90 E-value=3.4e+02 Score=26.03 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++..+++..+..+.|+ .+...+.+..+..+...|. ..+..++...|..=+..+..++..|..+.+..
T Consensus 70 ~va~~lK~fLreLPePlip~--~~~~~~~~~~~~~~~~~~i---~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s---- 140 (185)
T cd04373 70 AVAGALKSFFSELPDPLIPY--SMHLELVEAAKINDREQRL---HALKELLKKFPPENFDVFKYVITHLNKVSQNS---- 140 (185)
T ss_pred HHHHHHHHHHhcCCchhccH--HHHHHHHHHHhCCCHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcc----
Confidence 45567777777777766552 2444555555555554443 34446666666543444566777777776533
Q ss_pred chhhhhHHHHHHHHHHHH
Q 001855 981 PENLMAYDNAVSALGKIC 998 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~ 998 (1004)
+.+.+...|.+.|+|--+
T Consensus 141 ~~NkM~~~NLAi~f~P~L 158 (185)
T cd04373 141 KVNLMTSENLSICFWPTL 158 (185)
T ss_pred cccCCChHHHHHHHcccc
Confidence 357888899998887433
No 431
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=24.47 E-value=4.5e+02 Score=23.17 Aligned_cols=53 Identities=9% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhHhhhcc
Q 001855 127 TVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDTLT 179 (1004)
Q Consensus 127 ~l~~i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~~l~~~~~~~~~ 179 (1004)
.+..|+...+....+++++..|..-+.+. +|....-+|.++..++..-++.+.
T Consensus 21 ~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv 75 (123)
T cd03571 21 LMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVV 75 (123)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34555554444457788888888887665 677777789888888887665543
No 432
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=24.35 E-value=4e+02 Score=25.52 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCc
Q 001855 902 AICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1004)
Q Consensus 902 al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~ 981 (1004)
+.+++..+++..++.+.++ .+.+.++.....++..-|-. .+..++...|..-+..+..++..|..+... ++
T Consensus 70 va~~LK~flr~LpepLi~~--~~~~~~~~~~~~~~~~~~i~---~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~----s~ 140 (186)
T cd04377 70 ITSVLKQWLRELPEPLMTF--ELYENFLRAMELEEKQERVR---ALYSVLEQLPRANLNTLERLIFHLVRVALQ----EE 140 (186)
T ss_pred HHHHHHHHHHcCCCccCCH--HHHHHHHHHHhcCCHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHHHHHHhc----cC
Confidence 4456666666666655442 33445555554444443333 334556665554444456677777766543 33
Q ss_pred hhhhhHHHHHHHHHHHHhhhhc
Q 001855 982 ENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 982 ~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
.+.+..+|.+.++|--+...|+
T Consensus 141 ~NkM~~~nLaivf~P~ll~~~~ 162 (186)
T cd04377 141 VNRMSANALAIVFAPCILRCPD 162 (186)
T ss_pred CCCCCHHHHHHHHhhHhcCCCC
Confidence 5788889999999877765543
No 433
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.10 E-value=2.9e+02 Score=26.78 Aligned_cols=93 Identities=9% Similarity=-0.072 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++...++..+..+.++ .+.+.+++..+..+...|.. .+..++...|..-+..+..++..|..+... +
T Consensus 74 ~va~lLK~flReLPePLi~~--~~y~~~~~~~~~~~~~~~~~---~l~~li~~LP~~n~~~L~~L~~~L~~V~~~----s 144 (195)
T cd04384 74 SVSSLCKLYFRELPNPLLTY--QLYEKFSEAVSAASDEERLE---KIHDVIQQLPPPHYRTLEFLMRHLSRLAKY----C 144 (195)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHhcCCHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHHHHHHhh----h
Confidence 35566777777777654441 33445555554444444433 455677766654444456666666666643 3
Q ss_pred chhhhhHHHHHHHHHHHHhhhh
Q 001855 981 PENLMAYDNAVSALGKICQLFL 1002 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~~~ 1002 (1004)
+.+.+...|.+.++|--+...|
T Consensus 145 ~~NkM~~~NLAivf~P~L~~~~ 166 (195)
T cd04384 145 SITNMHAKNLAIVWAPNLLRSK 166 (195)
T ss_pred hhcCCCHHHhhHhhhhhcCCCC
Confidence 4688999999999987665544
No 434
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=24.03 E-value=3e+02 Score=26.43 Aligned_cols=94 Identities=10% Similarity=-0.012 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++...++..++.+.++ .+.+.++...+.++...|..+ +-.++...|..=+..+..++..|..+... +
T Consensus 69 ~va~lLK~flReLPepLi~~--~~~~~~~~~~~~~~~~~~~~~---l~~ll~~LP~~n~~~L~~l~~~L~~V~~~----s 139 (186)
T cd04407 69 AITGLLKQWLRELPEPLMTF--AQYNDFLRAVELPEKQEQLQA---IYRVLEQLPTANHNTLERLIFHLVKVALE----E 139 (186)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHHhc----c
Confidence 45566777777777655442 234445554444444444333 34556666654344456666666666543 3
Q ss_pred chhhhhHHHHHHHHHHHHhhhhc
Q 001855 981 PENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
+.+.+...|.+.++|--+...|+
T Consensus 140 ~~NkM~~~NLAivfaP~Ll~~~~ 162 (186)
T cd04407 140 DVNRMSPNALAIVFAPCLLRCPD 162 (186)
T ss_pred ccCCCChhHHHHhhhccccCCCC
Confidence 45788999999998876665543
No 435
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.92 E-value=2.5e+02 Score=24.22 Aligned_cols=70 Identities=7% Similarity=0.183 Sum_probs=44.9
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhccccHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001855 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH-LHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1004)
Q Consensus 142 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~vr~~a~~~l~~~ 212 (1004)
+.++..+.+.+....+..+..++.++..++..........+.. +.+.+....... ++.+|....+.+..+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~-~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKV-DEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc
Confidence 3455555566666667888889999999998865543322322 356666666655 778887666555443
No 436
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=23.73 E-value=3.2e+02 Score=26.42 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++..+++..++.+.|+ .+.+.+++..+..+...+..+ +..++...|..=+..+..++..|..+.. +
T Consensus 71 ~vaslLK~fLReLPePLi~~--~~y~~~~~~~~~~~~~~~~~~---l~~ll~~LP~~n~~~L~~L~~~L~~V~~-----s 140 (193)
T cd04382 71 VICGCLKDFLRSLKEPLITF--ALWKEFMEAAEILDEDNSRAA---LYQAISELPQPNRDTLAFLILHLQRVAQ-----S 140 (193)
T ss_pred HHHHHHHHHHHhCCCcCCCH--HHHHHHHHHHHcCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHhc-----c
Confidence 45567777777777765553 345556665555555444433 4456666554333445666666666654 2
Q ss_pred chhhhhHHHHHHHHHHHHhh
Q 001855 981 PENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~ 1000 (1004)
..+.+...|.+.++|--+..
T Consensus 141 ~~NkM~~~NLAivf~P~L~~ 160 (193)
T cd04382 141 PECKMDINNLARVFGPTIVG 160 (193)
T ss_pred ccCCCChHHhhhhhhchhcC
Confidence 35888999999998865543
No 437
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.65 E-value=1.4e+03 Score=27.75 Aligned_cols=73 Identities=11% Similarity=0.228 Sum_probs=41.6
Q ss_pred chHhHHHHHHHHHHHHHhcccCCCCcc---------hHHHHHHHhhcC--CChhHHHHHHHHHHHhhhhHhhhccccHHH
Q 001855 116 SAKSISKKLCDTVSELASNILPENGWP---------ELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIGDTLTPHLKH 184 (1004)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~~~~~---------~ll~~L~~~l~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 184 (1004)
....|.+.++.+|..|....+. .|+ .++.-+...+.. -+...+.-.+..++.+.+...+++..-+..
T Consensus 951 kErhvSqiAaSaiadilTelLt--dwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkP 1028 (1777)
T KOG1846|consen 951 KERHVSQIAASAIADILTELLT--DWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKP 1028 (1777)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh--ccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 4566777777777766553332 342 233333333322 245667777888888888777666555555
Q ss_pred HHHHHH
Q 001855 185 LHAVFL 190 (1004)
Q Consensus 185 l~~~l~ 190 (1004)
++..+.
T Consensus 1029 LFgaLe 1034 (1777)
T KOG1846|consen 1029 LFGALE 1034 (1777)
T ss_pred hHHHHH
Confidence 555443
No 438
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=23.54 E-value=3.8e+02 Score=23.23 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh---hhHhhHhhhhHHHHHHHhhcCcccchhhhHHHHHHH
Q 001855 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE---HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1004)
Q Consensus 500 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l 572 (1004)
|+.+++..|..-- .+++-.+.++.....+++.-.. ++..+...++..|..+=.+...++....|..|+-++
T Consensus 4 YlrDll~~L~~~~--~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval 77 (114)
T PF10193_consen 4 YLRDLLEYLRSDD--EDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVAL 77 (114)
T ss_dssp -HHHHHHHHT--------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhcCc--CCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHH
Confidence 5555555543221 1356667888888888876544 778888888888877633333344556666655444
No 439
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=23.32 E-value=5.1e+02 Score=22.74 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHhh---cCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh--CC--
Q 001855 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS--FR-- 428 (1004)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~--l~-- 428 (1004)
......+..++...-...-...++..+...+ ...+|....-|+..+..+..+.++.+...+..-...|... +.
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred CcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 3345566666654432345566778887777 5679999999999999999877765554444333333222 11
Q ss_pred CC-----ChhHHHHHHHHHHHh
Q 001855 429 DP-----HPRVRWAAINAIGQL 445 (1004)
Q Consensus 429 d~-----~~~vr~~a~~~l~~l 445 (1004)
|+ ...||..|-.++.-+
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHh
Confidence 11 124677666555443
No 440
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.38 E-value=6.7e+02 Score=23.75 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHHHHh-hhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 001855 894 KTAEERRIAICIFDDVAEQC-REAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1004)
Q Consensus 894 ~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~ 951 (1004)
.....-..++.|+..++... |-...-..+..+..+...|..++..+|..|+..|+.++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34455566788888887653 22211125667888899999999999999999998876
No 441
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=22.33 E-value=2.5e+02 Score=26.32 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcccCCCCc-----chHHHHHHHhhcCCChhHHHHHHHHHHHhhhhHhhhcc
Q 001855 124 LCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1004)
Q Consensus 124 ~~~~l~~i~~~~~~~~~~-----~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1004)
++.++..+....-+ +.| ..++|.+..++++........|+..+..+...+.+.+.
T Consensus 46 lvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~ 105 (164)
T PF13925_consen 46 LVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIR 105 (164)
T ss_pred HHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666532223 345 58999999999999999999999999999998776543
No 442
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=22.10 E-value=1.8e+03 Score=29.29 Aligned_cols=242 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001855 245 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1004)
Q Consensus 245 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1004)
++.......+...-...|+..-...+...++.++......|..+.++-..--++..+.. +.........++...-+.
T Consensus 1346 ~d~~~~s~~~~~k~~d~yS~qal~~lae~l~~lld~~~~sDEk~kv~~lls~v~~~ItP---ylk~~sa~nap~~~a~~~ 1422 (1749)
T KOG3613|consen 1346 PDAKSNSVYLLQKKLDVYSVQALFLLAERLADLLDVVYRSDEKDKVVPLLSIVNYNITP---YLKNHSARNAPLFRAGLQ 1422 (1749)
T ss_pred hhhhhhhhHHhhcCCccchHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHhhhH---HhccccccccchHHHHHH
Q ss_pred HHHHhhcCCCCCccccCCCCC-CccccCCcccchHHHHHHHHHHhc--CCCcchHHHHHHHHHhhc---------CCChh
Q 001855 325 ILMSMLLDIEDDPLWHSAETE-DEDAGESSNYSVGQECLDRLAIAL--GGNTIVPVASEQLPAYLA---------APEWQ 392 (1004)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~-~~d~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~---------~~~~~ 392 (1004)
.+..+..+.-....|..+.-| --|..-+........-+..+..+. .++.++..++..+.-.-. |.+.+
T Consensus 1423 LLasLSgy~y~rkaWrKe~~eLF~D~~fFqmd~s~l~~W~~Iid~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e 1502 (1749)
T KOG3613|consen 1423 LLASLSGYQYTRKAWRKEFLELFLDNSFFQMDLSCLRHWSSIIDHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELE 1502 (1749)
T ss_pred HHHHHhcCchhHHHHHHHHHHHhcCcchheeeHHHHHHHHHHHHHHHhCCchHHHHHHHHhhcccccceeeeecchHHHH
Q ss_pred HHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcC
Q 001855 393 KHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (1004)
Q Consensus 393 ~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 470 (1004)
.|...+.-+..++-+.+- ....|++.+.+.+...|+ ++.|.+|.+++-++..+.-.+.++=...+++.++..+...+.
T Consensus 1503 ~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv~vf~ 1582 (1749)
T KOG3613|consen 1503 QRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELVQVFL 1582 (1749)
T ss_pred HHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHHHHHH
Q ss_pred CCCChhH-------------------HHHHHHHHHHHh
Q 001855 471 DFQNPRV-------------------QAHAASAVLNFS 489 (1004)
Q Consensus 471 ~~~~~~v-------------------~~~a~~~l~~l~ 489 (1004)
....+.. ...||..|.-++
T Consensus 1583 q~eq~l~~~~~~~~s~~~~~qtw~~l~L~ACKlLDll~ 1620 (1749)
T KOG3613|consen 1583 QLEQDLQVGEANGQSTAYSSQTWLMLYLEACKLLDLLL 1620 (1749)
T ss_pred HHHhhhccccccccccccCchHHHHHHHHHHHHHHHHH
No 443
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.97 E-value=3.9e+02 Score=26.09 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++..+++..+..+.| ..+++.++...+..+...|..++. .++...|..-+..+..++..|..+... +
T Consensus 76 ~va~~lK~fLreLp~pli~--~~~~~~~~~~~~~~~~~~~~~~l~---~ll~~LP~~n~~~L~~l~~~l~~v~~~----~ 146 (203)
T cd04386 76 AVASALKSYLRELPDPLLT--YNLYEDWVQAANKPDEDERLQAIW---RILNKLPRENRDNLRYLIKFLSKLAQK----S 146 (203)
T ss_pred HHHHHHHHHHHhCCCccCC--HHHHHHHHHHHccCCHHHHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHh----c
Confidence 3455666666666654443 234555555555555544444433 445544443333344555555554432 2
Q ss_pred chhhhhHHHHHHHHHH
Q 001855 981 PENLMAYDNAVSALGK 996 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~ 996 (1004)
+.+.+...|.+.|+|-
T Consensus 147 ~~NkM~~~nLai~faP 162 (203)
T cd04386 147 DENKMSPSNIAIVLAP 162 (203)
T ss_pred cccCCChHHHHHHhcc
Confidence 2355555555555553
No 444
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.72 E-value=3.2e+02 Score=26.35 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCC
Q 001855 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1004)
Q Consensus 901 ~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1004)
.+.+++...++..+..+.|+ .+.+.+++..+..++..|..+ +..++...|..-+..+..++..|..+...+
T Consensus 75 ~va~~LK~fLreLp~pLi~~--~~~~~~~~~~~~~~~~~~~~~---l~~li~~LP~~n~~~L~~l~~~L~~v~~~s---- 145 (192)
T cd04398 75 SVASLLKLFFRELPEPLLTK--ALSREFIEAAKIEDESRRRDA---LHGLINDLPDANYATLRALMFHLARIKEHE---- 145 (192)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHhCCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----
Confidence 35566777777777655542 344555665555555544444 334566665544444666777776666443
Q ss_pred chhhhhHHHHHHHHHHHHhh
Q 001855 981 PENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 981 ~~~~~~~~na~~a~~~l~~~ 1000 (1004)
..+.+...|.+.++|-.+..
T Consensus 146 ~~NkM~~~nLaivf~P~l~~ 165 (192)
T cd04398 146 SVNRMSVNNLAIIWGPTLMN 165 (192)
T ss_pred hhhCCCHhHHHHHHhhhhCC
Confidence 34788899999999865544
No 445
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.67 E-value=2.6e+02 Score=26.84 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCCCCCc
Q 001855 902 AICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1004)
Q Consensus 902 al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~ 981 (1004)
..+++..+++..+..+.|+ .+.+.+++..+..+...|-.+ +-.++...|..-...+..++..|..+... ++
T Consensus 73 va~lLK~fLReLPepLi~~--~~~~~~~~~~~~~~~~~~i~~---l~~ll~~LP~~n~~~L~~L~~~L~~v~~~----s~ 143 (187)
T cd04403 73 ITGALKLFFRELPEPLFPY--SLFNDFVAAIKLSDYEQRVSA---VKDLIKSLPKPNHDTLKMLFRHLCRVIEH----GE 143 (187)
T ss_pred HHHHHHHHHhcCCCCcCCH--HHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHHhc----cc
Confidence 4557777777777655442 334555555555555555443 44566666654334455666666666543 34
Q ss_pred hhhhhHHHHHHHHHHHHhh
Q 001855 982 ENLMAYDNAVSALGKICQL 1000 (1004)
Q Consensus 982 ~~~~~~~na~~a~~~l~~~ 1000 (1004)
.+.+...|.+.|+|--+..
T Consensus 144 ~NkM~~~NLAivf~P~ll~ 162 (187)
T cd04403 144 KNRMTTQNLAIVFGPTLLR 162 (187)
T ss_pred cccCChHHhhhhccccccC
Confidence 5889999999988865543
No 446
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.18 E-value=1.2e+03 Score=26.35 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001855 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1004)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 216 (1004)
..+..+.++.+.++++ +...+.+|+--++..+..-
T Consensus 447 E~~palalLs~yl~s~-s~k~~~aaiLGlg~afsGt 481 (881)
T COG5110 447 ERPPALALLSNYLQSS-SSKHVIAAILGLGAAFSGT 481 (881)
T ss_pred ccchHHHHHHHhccCC-chHHHHHHHhhhHHhhcCC
Confidence 3566777888888887 8888888877776665543
No 447
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=20.96 E-value=1.8e+02 Score=22.77 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhH
Q 001855 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1004)
Q Consensus 145 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~ 174 (1004)
++.++.+..|..+..|..|+.+|+.|+...
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 778888888999999999999999888754
No 448
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=20.29 E-value=1.4e+03 Score=26.57 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=66.5
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChhHHHHHHHHHHHHhhcCCcccc-cCchHHHHHHHH
Q 001855 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLL 509 (1004)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l-~~~~~~i~~~l~ 509 (1004)
.+.++......++-+... ......+.+.+++..+.+.+...+...++.+.+..++.+.+..-++.. .+..+.+....-
T Consensus 451 ~~~l~~~~~~lL~l~~~~-~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~ 529 (559)
T PF14868_consen 451 QPYLQQTLSLLLSLLSFF-IQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFH 529 (559)
T ss_pred chHHHHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHH
Confidence 355555444444333322 222213456667777766665435556888999999998875543333 355666666666
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHh
Q 001855 510 VLLQNGKQMVQEGALTALASVADSS 534 (1004)
Q Consensus 510 ~~l~~~~~~vr~~a~~~l~~l~~~~ 534 (1004)
.++.+.+.-+...|+++++.++...
T Consensus 530 ~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 530 MLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhccC
Confidence 6789999999999999999988654
Done!