Query 001855
Match_columns 1004
No_of_seqs 304 out of 2920
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 17:35:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001855.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1150-1153//hhsearch_pdb/001855hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 525.6 75.3 705 17-798 5-743 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 514.1 78.8 800 19-953 1-858 (861)
3 1qgr_A Protein (importin beta 1.0 1 1 492.6 75.0 805 23-955 2-874 (876)
4 1u6g_C TIP120 protein, CAND1; 1.0 1 1 465.7 61.5 892 17-1003 1-1098(1230)
5 1wa5_C Importin alpha RE-expor 1.0 1 1 405.8 69.8 687 19-741 2-790 (960)
6 2x1g_F Cadmus; transport prote 1.0 1 1 392.6 51.8 708 19-798 4-859 (971)
7 2x19_B Importin-13; nuclear tr 1.0 1 1 391.9 61.9 712 18-800 20-849 (963)
8 1qgr_A Protein (importin beta 1.0 1 1 369.0 70.5 781 68-1003 12-875 (876)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 362.1 62.8 769 54-943 9-815 (852)
10 3m1i_C Exportin-1; heat repeat 1.0 1 1 361.7 69.8 721 18-800 12-881 (1049)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=525.64 Aligned_cols=705 Identities=20% Similarity=0.247 Sum_probs=555.0
Q ss_pred CCCCHH---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 099917---89999999339993888999999988640391599999999980--6999778988999999760358887
Q 001855 17 LGPDSA---PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSF 91 (1004)
Q Consensus 17 ~~~d~~---~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~r~~a~~~L~~~i~~~~~~ 91 (1004)
|.++++ ++.++|..++|||+++|++|+++|+++++ +|++ ..+|..++. ++.++.+|++|++.||+.++++
T Consensus 5 w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~~-~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~--- 79 (852)
T 4fdd_A 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDF-NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH--- 79 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHHH-HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS---
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC---
T ss_conf 89984239999999998739498999999999999870-9988-999999985668898679999999999989874---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 45678987899999999899941641769999999999998421699995127999999512998667889999999925
Q 001855 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1004)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~i~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~i~ 171 (1004)
|..++++.++.||..+++.+.+ +++.+|+.++.+++.|++.+++ +.||++++.|.+.+.++++.+|++++.+++.++
T Consensus 80 -w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 80 -FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp -GGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf -4779999999999999998749-9899999999999999986481-356899999999870999899999999999999
Q ss_pred HHHHHHCC-----CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 66742100-----0099999999985369999489999999999999830691117679736999999999998359956
Q 001855 172 QYIGDTLT-----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1004)
Q Consensus 172 ~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 246 (1004)
+..++.+. ..++.+++.+.++++++ +..||..|++++..++... ...+...++.+++.+...+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~-----~~~~~~~~~~~l~~l~~~~~d~~~~ 230 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISR-----TQALMLHIDSFIENLFALAGDEEPE 230 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTT-----CHHHHTSHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHCHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 985787563431332999999999985679-7899999999999998646-----3879988999999999871799778
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH
Q ss_conf 89999999999872020988993999999999962378754578999999999999721015223210344599999999
Q 001855 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1004)
Q Consensus 247 ~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1004)
+|..++++|..+++.++..+.+|+..+++.++.... +.++.+|..|+++|..+++. +...+...+++..++|.+
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~--~~~~~vr~~a~e~l~~l~~~----~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ--DQDENVALEACEFWLTLAEQ----PICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTS----TTHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999985779899889999999998706--99689999999999998603----657988788898899999
Q ss_pred HHHHCCCCCCCCCCCCC-CCCCCC----CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98515789983334789-987664----6776110388899999976399742678887798842698966899999999
Q 001855 327 MSMLLDIEDDPLWHSAE-TEDEDA----GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (1004)
Q Consensus 327 ~~~l~~~~~~~~~~~~~-~~~~d~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1004)
+..|.+.+++..|...+ ++|+++ ..++.+.++..+++.++...+ +.+++.+++.+.+.+++++|.+|++++.++
T Consensus 305 l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 305 VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9875786767998669844322245640111699999999999987461-878999999999985599889999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99993329999982999999998407999864899999999986643205588632431699999513799994699999
Q 001855 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1004)
Q Consensus 402 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1004)
|.+++++++.+.++++.+++.+...++|+++.||.+++++++++++++++.....++..+++.+++.+.+ +++.||..|
T Consensus 384 g~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a 462 (852)
T 4fdd_A 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAA 462 (852)
T ss_dssp HHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_conf 9998635688998799999999987179988999999999999998861104789999999999999858-988899999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999998601896543375689999999985238754999999999999998376558--53845668899998510762
Q 001855 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDK 559 (1004)
Q Consensus 482 ~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~ 559 (1004)
++++..+++.++.. +.||++.+++.+...+++.+......++.+++.++...+..+. +|++.++|.+.+.+....+.
T Consensus 463 ~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 463 CSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999973676-67679999999999998837479999999999999974243136789999889999998733304
Q ss_pred CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-------------CCC-CCCCHHHHHHHHHHHHHHHHC
Q ss_conf 100135799999999996418343355499999999998268-------------899-997013699999999996801
Q 001855 560 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-------------QME-TDDPTTSYMLQAWARLCKCLG 625 (1004)
Q Consensus 560 ~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~-------------~~~-~~~~~~~~~~~~l~~i~~~~~ 625 (1004)
...++ .+++|++.++.++| ..|.||++.+++.+...... ..+ .+...+..++.+++.++..+|
T Consensus 542 -~~~~~-~~~~~l~~i~~~~g-~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~ 618 (852)
T 4fdd_A 542 -DKDLF-PLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG 618 (852)
T ss_dssp -CTTHH-HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG
T ss_pred -CHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -69999-99999999999974-8679889999999999999999999875338866688761199999999978999874
Q ss_pred CCCCCCH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6853322--65359999970569983225789876434688854102202891355301169889999999999999940
Q 001855 626 QDFLPYM--SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (1004)
Q Consensus 626 ~~~~~~l--~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~l~~l~~~~~ 703 (1004)
..+.+|+ +.+++.++..+.. +. .+.+..+..+++.++..++
T Consensus 619 ~~~~~~~~~~~~~~~l~~~l~~-~~------------------------------------~~vr~~a~~~l~~l~~~~~ 661 (852)
T 4fdd_A 619 GNIEQLVARSNILTLMYQCMQD-KM------------------------------------PEVRQSSFALLGDLTKACF 661 (852)
T ss_dssp GGGHHHHHTCCHHHHHHHHTTC-SS------------------------------------HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHCCCCHHHHHHHHHCC-CC------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_conf 7699883677189999998389-98------------------------------------4499999999999999816
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCH
Q ss_conf 0151319988987510247658977999999849999999999998089999997999999999999999997019-929
Q 001855 704 EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE-PDT 782 (1004)
Q Consensus 704 ~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~ 782 (1004)
..+.||++.+++.+.+.++.. ..++|..|+.+++.++.... +.+.+++..+++.++..+.+. ...
T Consensus 662 ~~~~~~l~~~lp~l~~~l~~~-~~~v~~~a~~alg~i~~~~~-------------~~~~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 662 QHVKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMG-------------IEMQPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp GGTGGGHHHHHHHHHHTCCTT-SHHHHHHHHHHHHHHHHHHG-------------GGGGGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 888987999999999876942-06899999999999999711-------------7678789999999999857998872
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999998
Q 001855 783 EICASMLDSLNECIQI 798 (1004)
Q Consensus 783 ~~~~~~~~~l~~~~~~ 798 (1004)
.++..+..+++.+...
T Consensus 728 ~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 728 TLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 0778899999999986
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=514.14 Aligned_cols=800 Identities=17% Similarity=0.258 Sum_probs=632.3
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------
Q ss_conf 9917899999993-3999388899999998864039159999999998069-997789889999997603588-------
Q 001855 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD------- 89 (1004)
Q Consensus 19 ~d~~~l~~ll~~~-~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~r~~a~~~L~~~i~~~~------- 89 (1004)
||++++.++|..+ +|||++.|++|+++|+++++++++.|...|++++.++ .++.+|++|+++||+.++.+|
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899867999999998702257574878999
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 874567-898789999999989994164176999999999999842169999512799999951299-866788999999
Q 001855 90 SFLWPR-LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIF 167 (1004)
Q Consensus 90 ~~~w~~-l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~i~~i~~~~~~~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l 167 (1004)
...|.. ++++.++.||..+++.+.+ ++..+|+.++.+++.|++.++|.+.||++++.|.+.+.++ ++..|++++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 97676629999999999999998779-96379999999999999846764554999999999872689789999999999
Q ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9925667421---0000999999999853699-99489999999999999830691117679736999999999998359
Q 001855 168 AQLSQYIGDT---LTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1004)
Q Consensus 168 ~~i~~~~~~~---~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~ 243 (1004)
+.+++..++. +.++.+.+++.+...+.++ .+..||..+++++..++.++....... ...+.+++.+...+.++
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE---GERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH---HHHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHCCC
T ss_conf 999972784356789889999999998415799987899999999999999999870676---68999999999986599
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC----------CHHH
Q ss_conf 9568999999999987202098899399-9999999962378754578999999999999721015----------2232
Q 001855 244 NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA----------PGMM 312 (1004)
Q Consensus 244 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~ir~~a~~~l~~l~~~~~~~----------~~~~ 312 (1004)
++++|..++++|..++..++..+.+++. .+++.++..+. +.++.+|..++++|..+++..... |...
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 314 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQS 314 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 8899999999999999998899999889999999999873--77278999999999999987886433321035773256
Q ss_pred -HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf -1034459999999998515789983334789987664677611038889999997639974267888779884269896
Q 001855 313 -RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1004)
Q Consensus 313 -~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (1004)
+...+++..++|.++..+.+.+++ +++++++.+..+..++..++..++ +.+++.+++.+.+.+++++|
T Consensus 315 ~~~~~~~~~~il~~ll~~l~~~~~d----------~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 315 YNFALSSIKDVVPNLLNLLTRQNED----------PEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999988999999998706653----------012468689999999999998740-86899999999987579972
Q ss_pred HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHC
Q ss_conf 689999999999993329-99998299999999840799986489999999998664320558-8632431699999513
Q 001855 392 QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAM 469 (1004)
Q Consensus 392 ~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l 469 (1004)
..|++++.+++.+++++. +.+.++++.+++.+...+.|+++.||..+++++++++..+++.+ ...+++.+++.+++.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 69999999999998599878889989999999998828995999999999999999873540487888999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799994699999999999860189---65433756899999999852387--5499999999999999837655853845
Q 001855 470 DDFQNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDA 544 (1004)
Q Consensus 470 ~~~~~~~v~~~a~~~l~~l~~~~~---~~~l~~~~~~i~~~l~~~l~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 544 (1004)
++ + +.||..+++++..+++.++ .+.+.+|++.+++.+...+.+.+ ..+|..++.+++.++...+..+.+|+..
T Consensus 464 ~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 464 QD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541 (861)
T ss_dssp TS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred CC-C-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 44-7-289999999999999862313542468999999999999985758615899999999999999762656999999
Q ss_pred HHHHHHHHHHHCC-------C----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHH
Q ss_conf 6688999985107-------6----2100135799999999996418343355499999999998268899997-01369
Q 001855 545 VMPFLKAILVNAT-------D----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-PTTSY 612 (1004)
Q Consensus 545 i~~~l~~~l~~~~-------~----~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~-~~~~~ 612 (1004)
++|.+.+.+.... . +....++..++.+++.++..+| ..+.|+.+.+++.++...... +. .+++.
T Consensus 542 l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~---~~~~v~~~ 617 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP-SSVEPVADMLMGLFFRLLEKK---DSAFIEDD 617 (861)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHHHHST---TGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC---CCCCHHHH
T ss_conf 99999999998875320138855677799999999999999999855-634789999999999997467---88757999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 99999999968016853322653599999705699832257898764346888541022028913553011698899999
Q 001855 613 MLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATAC 692 (1004)
Q Consensus 613 ~~~~l~~i~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 692 (1004)
++.+++.++...|..|.||++.+++.+++.++. ++ ...+..++
T Consensus 618 ~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~------------------------------------~~vr~~a~ 660 (861)
T 2bpt_A 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQ-VD------------------------------------SPVSITAV 660 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC-TT------------------------------------SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC------------------------------------HHHHHHHH
T ss_conf 999999999997660999999999999988655-66------------------------------------78999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999940015131998898751024765-89779999998499999999999980899999979999999999999
Q 001855 693 NMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1004)
Q Consensus 693 ~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 771 (1004)
.+++.+++..+..+.||++.+++.+...+.+. .+..+|..++.+++.++...+ +.+.++++.++|.
T Consensus 661 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~-------------~~~~~~l~~~l~~ 727 (861)
T 2bpt_A 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG-------------ADFIPYLNDIMAL 727 (861)
T ss_dssp HHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG-------------GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_conf 999999987454031119999999999727865567665999999999999840-------------5089999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99997019929899999999999999839999999899999999999999998799999973055888677456345435
Q 001855 772 LVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1004)
Q Consensus 772 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e 851 (1004)
++..+.....+ + ..+ ..+
T Consensus 728 l~~~~~~~~~~-----------------~---d~d------------------------------------------~~~ 745 (861)
T 2bpt_A 728 CVAAQNTKPEN-----------------G---TLE------------------------------------------ALD 745 (861)
T ss_dssp HHHHHTCCCSS-----------------S---SHH------------------------------------------HHH
T ss_pred HHHHHHCCCCC-----------------C---CHH------------------------------------------HHH
T ss_conf 99997367899-----------------9---758------------------------------------------899
Q ss_pred HHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H
Q ss_conf 599999999999999999800---041365989897685321699--9-8989999999799998772-365785357-4
Q 001855 852 QEEEVFDQVGEILGTLIKTFK---AAFLPFFDELSSYLTPMWGKD--K-TAEERRIAICIFDDVAEQC-REAALKYYE-T 923 (1004)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~ll~~l~~~l~~~--~-~~~~r~~al~~l~~l~~~~-~~~~~~~~~-~ 923 (1004)
....+|..+.++++.++...+ +.+.+++..+++.+...+.+. + +..+|..++.+++.+++.. |..+.++++ .
T Consensus 746 ~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~ 825 (861)
T 2bpt_A 746 YQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD 825 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCH
T ss_conf 99999999999999999998267788999999999999998748555786999999999999999882882488987267
Q ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHHHHHHH
Q ss_conf 8999995537---99936888887999999863
Q 001855 924 YLPFLLEACN---DENQDVRQAAVYGLGVCAEF 953 (1004)
Q Consensus 924 l~~~~~~~l~---~~~~~vr~~a~~~lg~l~~~ 953 (1004)
+++.+++.++ +.+..++.+|.|++|.+.+.
T Consensus 826 ~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 826 WVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999988535578877899999999999987
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=492.59 Aligned_cols=805 Identities=17% Similarity=0.241 Sum_probs=585.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------CCCCC
Q ss_conf 8999999933999388899999998864039159999999998069-997789889999997603588-------87456
Q 001855 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1004)
Q Consensus 23 ~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~r~~a~~~L~~~i~~~~-------~~~w~ 94 (1004)
++.++|+.++|||+++|++|+.+|+++.++++..+...|++++.++ .++.+|++|++.||+.+...+ ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 7898789999999989994164176999999999999842169999512799999951299--86678899999999256
Q 001855 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (1004)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~i~~i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~~i~~ 172 (1004)
.++++.++.||..+++.+.+ .+..+ +.++.+++.|++.++|.+.||++++.+.+.+.++ ++.+|..++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 69999999999999998679-94788-99999999999846762256889999999870889879999999999999987
Q ss_pred HH-HHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 67-42100009999999998536999-94899999999999998306911176797369999999999983599568999
Q 001855 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1004)
Q Consensus 173 ~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~ 250 (1004)
.. ++.+..+.+.+++.+.+.+.++. +..+|..+++++..++.++........ ..+.+++.+...+.++++++|..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES---ERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 458766786799999999986167999889999999999999999999887178---99999999998717998899999
Q ss_pred HHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-------------CC--HHHHC
Q ss_conf 999999987202098899399-999999996237875457899999999999972101-------------52--23210
Q 001855 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-------------AP--GMMRK 314 (1004)
Q Consensus 251 a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~ir~~a~~~l~~l~~~~~~-------------~~--~~~~~ 314 (1004)
++++|..++..++..+.+++. .+++.++... .+.++.+|..++++|..+++.... .| .....
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAM--KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH--TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99999999998699999887789999999996--3873499999999999998878767665100112477754201899
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 34459999999998515789983334789987664677611038889999997639974267888779884269896689
Q 001855 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1004)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1004)
..+++..++|.++..+...+++ +++++++.+.++..++..++...+ +.+++.+++.+...+++++|.+|
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d----------~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDEN----------DDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS----------CCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCC----------CCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9998988707999875313344----------454521799999999999998775-86699999999988469982899
Q ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999993329-99998299999999840799986489999999998664320558-8632431699999513799
Q 001855 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDF 472 (1004)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~ 472 (1004)
++++.+++.+++++. +.+.++++.+++.++..++|+++.||..|+++++++++.+++.. ..++++.+++.++..+.+
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~- 462 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCC-
T ss_conf 9999999999748877789999999999999986799789999999999999985720114477799999999998758-
Q ss_pred CCHHHHHHHHHHHHHHHHCCC-------------CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 994699999999999860189-------------6543375689999999985238---754999999999999998376
Q 001855 473 QNPRVQAHAASAVLNFSENCT-------------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQE 536 (1004)
Q Consensus 473 ~~~~v~~~a~~~l~~l~~~~~-------------~~~l~~~~~~i~~~l~~~l~~~---~~~vr~~a~~~l~~l~~~~~~ 536 (1004)
+ +.|+..+++++..+++.++ .+.+.||++.+++.+...+.+. +..+|..++.+++.++...+.
T Consensus 463 ~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 463 E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred C-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 8-889999999999999985020123444455540321576999999999997276742046999999999999997743
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CHHH
Q ss_conf 55853845668899998510762100135799999999996418343355499999999998268899997-----0136
Q 001855 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-----PTTS 611 (1004)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~-----~~~~ 611 (1004)
.+.+|+..+++.+...+..... + .......++ .++.
T Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~--------------------~-------------------~~~~~~~~d~~~~~~~~~ 582 (876)
T 1qgr_A 542 DCYPAVQKTTLVIMERLQQVLQ--------------------M-------------------ESHIQSTSDRIQFNDLQS 582 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHT--------------------T-------------------TTSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------H-------------------HHCCCCHHHHHHHHHHHH
T ss_conf 1189999999999999999998--------------------8-------------------712488635999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECHHHHHHHH
Q ss_conf 99999999996801-68533226535999997056998322578987643468885410220289135530116988999
Q 001855 612 YMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKAT 690 (1004)
Q Consensus 612 ~~~~~l~~i~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 690 (1004)
.++.+++.++..+| ..+.||++.+++.++..+....+ . ...+..
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~----------------~-------------------~~v~~~ 627 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG----------------S-------------------GGVQED 627 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC---------------------C-------------------CHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC----------------C-------------------CCCCHH
T ss_conf 99999999999828542057899999999999985368----------------8-------------------885089
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999400151319988987510247658977999999849999999999998089999997999999999999
Q 001855 691 ACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIP 770 (1004)
Q Consensus 691 a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 770 (1004)
++.+++.++...+..|.||++.+++.+.+.+.+..+..+|..++.+++.++...+ +.+.+.+..+++
T Consensus 628 a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-------------~~~~~~~~~i~~ 694 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-------------SNIIPFCDEVMQ 694 (876)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-------------GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
T ss_conf 9999999999987609999999999999987586508799999999999999887-------------854645999999
Q ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999701-99298999999999999998399999998999999999999999987999999730558886774563454
Q 001855 771 ALVEALHK-EPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE 849 (1004)
Q Consensus 771 ~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~ 849 (1004)
.++..+.. +.+.+++..++.+++.+....|+.+. .+++.++ +.+..... ...+.+++ +.
T Consensus 695 ~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~-~~l~~~~----~~l~~~~~---------~~~~~~d~------~~ 754 (876)
T 1qgr_A 695 LLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK-KYLEVVL----NTLQQASQ---------AQVDKSDY------DM 754 (876)
T ss_dssp HHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG-GGHHHHH----HHHHHHHT---------CCCCTTCH------HH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHH----HHHHHHHH---------CCCCCCCH------HH
T ss_conf 99997487123387639999999999997035279-9999999----99999985---------55899975------88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 355999999999999999998000----------413659898976853216999--898999999979999877236-5
Q 001855 850 NEQEEEVFDQVGEILGTLIKTFKA----------AFLPFFDELSSYLTPMWGKDK--TAEERRIAICIFDDVAEQCRE-A 916 (1004)
Q Consensus 850 ~e~~~~~~~~~~~~l~~l~~~~~~----------~~~~~~~~ll~~l~~~l~~~~--~~~~r~~al~~l~~l~~~~~~-~ 916 (1004)
.+....+|..+.+++..+++..+. .+.||+..+++.+..... ++ +..+|..++.+++.++...|. .
T Consensus 755 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~ 833 (876)
T 1qgr_A 755 VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG-DEDHTDGVVACAAGLIGDLCTAFGKDV 833 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT-CSCCCHHHHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9999999999999999999997457555554388999999999999999865-888888999999999999998828488
Q ss_pred HHHH-HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 7853-5748999995-5379993688888799999986306
Q 001855 917 ALKY-YETYLPFLLE-ACNDENQDVRQAAVYGLGVCAEFGG 955 (1004)
Q Consensus 917 ~~~~-~~~l~~~~~~-~l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1004)
+.++ .+.+++.++. .++++++.+|++|+|++|.+.+..+
T Consensus 834 ~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 834 LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99997048999999987546887689999999999997534
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=465.72 Aligned_cols=892 Identities=13% Similarity=0.165 Sum_probs=609.9
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0999178999999933999388899999998864039--------15999999999806999778988999999760358
Q 001855 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD--------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1004)
Q Consensus 17 ~~~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~--------p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~ 88 (1004)
|+.++..+.++|+.+.|||++.|.+|+..|.+..+.. +..++..++..+. +.++.+|+.|+..|...+.
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~-- 77 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS-- 77 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH--
T ss_conf 9836769999997558987859999999999997416657875679999999999866-9998999999999999997--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC--------CCCHHHHHHHHHHC-CCCHHH
Q ss_conf 887456789878999999998999416417699999999999984216999--------95127999999512-998667
Q 001855 89 DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVS-SDSVKL 159 (1004)
Q Consensus 89 ~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~i~~i~~~~~~~~--------~~~~ll~~L~~~l~-~~~~~~ 159 (1004)
.++++..+.+...+++.+.+ ++..+|..++.+++.++....+.. .|++++|.|.+.+. ++++.+
T Consensus 78 ------~~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 78 ------KVKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp ------TSCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred ------HCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf ------58798999999999998669-83889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999992566742100009999999998536999948999999999999983069111767973699999999999
Q 001855 160 QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (1004)
Q Consensus 160 r~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 239 (1004)
|..++.++..+++..+..+.++.+.+++.+...+.++ +..||..|+.+++.++...++ ..+..+++.+++.+..
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~----~~~~~~l~~l~~~L~~- 224 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSK- 224 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHCC-
T ss_conf 9999999999999827677887999999999987599-689999999999999985689----9999999999998616-
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHH
Q ss_conf 83599568999999999987202098899399999999996237875457899999999999972101522321034459
Q 001855 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 319 (1004)
Q Consensus 240 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 319 (1004)
..+...|..+++++..++...+..+.+|++.+++.++..+. +.++++|..+++++..+++. .+ ..+.+++
T Consensus 225 --~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~---~~---~~~~~~l 294 (1230)
T 1u6g_C 225 --NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRR---CP---KEVYPHV 294 (1230)
T ss_dssp --TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHC---TT---CCCHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH---CH---HHHHHHH
T ss_conf --77556899999999999998689899889999999999866--89778999999999999997---84---8777768
Q ss_pred HHHHHHHHHHHCCCCC-----CCCCCC------CCCCC---------CCCCCCCCCCHHHHHHHHHHHHCCC--CCCHHH
Q ss_conf 9999999985157899-----833347------89987---------6646776110388899999976399--742678
Q 001855 320 NRLFAILMSMLLDIED-----DPLWHS------AETED---------EDAGESSNYSVGQECLDRLAIALGG--NTIVPV 377 (1004)
Q Consensus 320 ~~l~~~l~~~l~~~~~-----~~~~~~------~~~~~---------~d~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~ 377 (1004)
+.++|.++..+....+ +.+|.. .++++ +++..|..+..+..++..++...+. ..+++.
T Consensus 295 ~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~ 374 (1230)
T 1u6g_C 295 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 374 (1230)
T ss_dssp HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999982789988876441101122334465301100136664555677999999999999997466679999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-------------------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 887798842698966899999999999933-------------------2999998299999999840799986489999
Q 001855 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEG-------------------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1004)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~-------------------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 438 (1004)
+++.+...+.+.+..+|.+++.+++.++.. +...+..+++.+++.+.+.++++++.+|..+
T Consensus 375 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~ 454 (1230)
T 1u6g_C 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 454 (1230)
T ss_dssp THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98999987179865799999999999999724243434675201356455999998746999999998613778799999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999986643205588632431699999513799994--69999999999986018965433756899999999852387
Q 001855 439 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1004)
Q Consensus 439 ~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~--~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~~~ 516 (1004)
+.+++.++...+..+ .++++.+++.++..+.+ +++ .++..++.++..+++..+++.+.+|++.+++.++..+++++
T Consensus 455 ~~~L~~l~~~~~~~l-~~~l~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~ 532 (1230)
T 1u6g_C 455 FNMLTELVNVLPGAL-TQHIPVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF 532 (1230)
T ss_dssp HHHHHHHHHHSTTTT-GGGHHHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999761105-77799999999999748-7885168999999999999838988788679999999999971424
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 54999999999999998376-------55853845668899998510762100135799999999996418343355499
Q 001855 517 QMVQEGALTALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 589 (1004)
Q Consensus 517 ~~vr~~a~~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~~~~~~~~~~ 589 (1004)
..++..++.+++.++..++. .+.||++.+++.+...+... +.+..+|..++.+++.++...| +.+.++++
T Consensus 533 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~--d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~ 609 (1230)
T 1u6g_C 533 YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA--DIDQEVKERAISCMGQIICNLG-DNLGSDLP 609 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS--SSCHHHHHHHHHHHHHHHHHTG-GGCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_conf 68999999999999987167555653232789999999999987326--9988999999999999999827-03244388
Q ss_pred HHHHHHHHHHCCCC-------------------------------------CCCCCHHHHHHHHHHHHHHHHCCC-----
Q ss_conf 99999999826889-------------------------------------999701369999999999680168-----
Q 001855 590 QVMEVLMSLQGSQM-------------------------------------ETDDPTTSYMLQAWARLCKCLGQD----- 627 (1004)
Q Consensus 590 ~i~~~l~~l~~~~~-------------------------------------~~~~~~~~~~~~~l~~i~~~~~~~----- 627 (1004)
.+++.+........ +.+..+|..++.+++.++...+..
T Consensus 610 ~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~ 689 (1230)
T 1u6g_C 610 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAM 689 (1230)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999998844530599999999999818564436888999999999999867888999999999999960433389899
Q ss_pred -------------------------------------CCCCHHHHHHHHHHHCCCCC--CCC----------CCCCCC-C
Q ss_conf -------------------------------------53322653599999705699--832----------257898-7
Q 001855 628 -------------------------------------FLPYMSVVMPPLLQSAQLKP--DVT----------ITSADS-D 657 (1004)
Q Consensus 628 -------------------------------------~~~~l~~i~~~ll~~~~~~~--~~~----------~~~~~~-~ 657 (1004)
+.++.+.+++.++..+.... +.. ...... .
T Consensus 690 v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 769 (1230)
T 1u6g_C 690 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNN 769 (1230)
T ss_dssp HHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998763575418789999999999988491267776776899999997586210578999999999998347887
Q ss_pred CCCCC-----------CCC--CCCCHHH------------CCC--------CEEEEEC--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 64346-----------888--5410220------------289--------1355301--16988999999999999994
Q 001855 658 NEIED-----------SDD--DSMETIT------------LGD--------KRIGIKT--SVLEEKATACNMLCCYADEL 702 (1004)
Q Consensus 658 ~~~~~-----------~~~--~~~~~~~------------~~~--------~~~~i~~--~~~~~~~~a~~~l~~l~~~~ 702 (1004)
...++ .+. ....... .++ ....+++ .....+..++.+++.+....
T Consensus 770 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 849 (1230)
T 1u6g_C 770 LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI 849 (1230)
T ss_dssp CSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 88999999985003578873200010489999999999846566689999999983788766799999999999861567
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 00151319988987510247658977999999849999999999998089999997999999999999999997019929
Q 001855 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT 782 (1004)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 782 (1004)
.+.++ +++.+.+.+.+.+. ++.||.+|+.+++.+.... ...++|.++..+.++ +
T Consensus 850 --~~~~~-~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~--------------------~~~~lp~ll~~l~~~--~ 903 (1230)
T 1u6g_C 850 --DLSGQ-LELKSVILEAFSSP-SEEVKSAASYALGSISVGN--------------------LPEYLPFVLQEITSQ--P 903 (1230)
T ss_dssp --CCCSC-THHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT--------------------HHHHHHHHHHHHHSC--G
T ss_pred --CCCCC-CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHCC--C
T ss_conf --87656-41899999984799-7789999999968775269--------------------998899999987266--0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999983999999989999999999999999879999997305588867745634543559999999999
Q 001855 783 EICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGE 862 (1004)
Q Consensus 783 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~ 862 (1004)
+.+...+.++.+++...+. +.+.+....+++.|.... + + .++.++..+++
T Consensus 904 ~~~~~~l~al~e~i~~~~~----~~~~~~~~~i~~~L~~~~----------~--~--------------~~~~~r~~~a~ 953 (1230)
T 1u6g_C 904 KRQYLLLHSLKEIISSASV----VGLKPYVENIWALLLKHC----------E--C--------------AEEGTRNVVAE 953 (1230)
T ss_dssp GGHHHHHHHHHHHHHSSCS----TTTHHHHHHHHHHHTTCC----------C--C--------------SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHH----------C--C--------------CCHHHHHHHHH
T ss_conf 3249889999999823876----667766999999999873----------3--8--------------30446899998
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999998000413659898976853216999898999999979999877236578535748999995537999368888
Q 001855 863 ILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQA 942 (1004)
Q Consensus 863 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~ 942 (1004)
|+|.++...++. ++|.+...+ .+.++..|..++.+++.++..++..+.++++.+++.++..++|++..||++
T Consensus 954 ~lg~l~~~~~~~-------l~p~l~~~l-~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~ 1025 (1230)
T 1u6g_C 954 CLGKLTLIDPET-------LLPRLKGYL-ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRV 1025 (1230)
T ss_dssp HHHHHHHSSGGG-------THHHHTTTS-SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHH
T ss_pred HHHHHHCCCHHH-------HHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 875665067688-------889999985-699788999999999999706823358989998999998648985879999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC------------CCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 879999998630655178899999999985259998------------8810024688899999999764106
Q 001855 943 AVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNA------------LQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 943 a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~------------~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
|+++++.++++.|+.+.++++.+++.|++.+..+.. +.+++..+|.||..|+++|+.++..
T Consensus 1026 a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~ 1098 (1230)
T 1u6g_C 1026 ALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD 1098 (1230)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999984285768977988989999883026876013305896023677489999999999999998887
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=405.80 Aligned_cols=687 Identities=13% Similarity=0.165 Sum_probs=490.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCCCCCCC---
Q ss_conf 9917899999993399938889999999886403915999999999806-999778988999999760358887456---
Q 001855 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (1004)
Q Consensus 19 ~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~r~~a~~~L~~~i~~~~~~~w~--- 94 (1004)
.|.+++.++|..++|||+++| |+++|+++++ +|++ ...|++++.+ +.+..+|++|+++||+.++++ |.
T Consensus 2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~~-~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~ 73 (960)
T 1wa5_C 2 SDLETVAKFLAESVIASTAKT--SERNLRQLET-QDGF-GLTLLHVIASTNLPLSTRLAGALFFKNFIKRK----WVDEN 73 (960)
T ss_dssp CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STTH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSS
T ss_pred CCHHHHHHHHHHHCCCCHHHH--HHHHHHHHHC-CCCH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----CCCCC
T ss_conf 759999999997659987899--9999998555-9988-99999998657988889999999999999854----88765
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ---78987899999999899941641769999999999998421699995127999999512998667889999999925
Q 001855 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1004)
Q Consensus 95 ---~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~i~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~i~ 171 (1004)
.++++.++.||+.+++.+.++ +..+|+.++.+++.|++.++| +.||++++.|.+.+++++...+++++.++..++
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 678899899999999999999808-799999999999999986171-301579999999847898899999999999999
Q ss_pred HHHHH---------H----CCCCHHHHHHHHH---HHHCCCCC--HHHH------HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 66742---------1----0000999999999---85369999--4899------9999999999983069111767973
Q 001855 172 QYIGD---------T----LTPHLKHLHAVFL---NCLTNSNN--PDVK------IAALNAVINFIQCLTSSADRDRFQD 227 (1004)
Q Consensus 172 ~~~~~---------~----~~~~~~~l~~~l~---~~l~~~~~--~~vr------~~a~~~l~~~~~~~~~~~~~~~~~~ 227 (1004)
+.... . +....+.+++.+. +.+.++.. ..++ ..+++++..+... . .+..+.+
T Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~-~---~~~~~~~ 227 (960)
T 1wa5_C 152 KRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ-D---IPEFFED 227 (960)
T ss_dssp GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS-C---CCHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC-C---CHHHHHH
T ss_conf 99887614847789999999998999999999999998735798799999999999999999998625-6---5599999
Q ss_pred HHHHHHHHHHHHHHC------CC---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCCCHH
Q ss_conf 699999999999835------99---------56899999999998720209889939999999999623---7875457
Q 001855 228 LLPLMMRTLTESLNN------GN---------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE---AESLEEG 289 (1004)
Q Consensus 228 ~~~~il~~l~~~l~~------~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~ 289 (1004)
.++.+++.+...+.. .+ +.++..+++++..+.+.+++.+.++++.+++.++..+. +...++.
T Consensus 228 ~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (960)
T 1wa5_C 228 NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDI 307 (960)
T ss_dssp THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 89999999999976899855578553313279999999999999999998999999999999999999984377767289
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCC--HHHHHHHH-HHHHHHHCCCCC-CCCCCCCCCC-----CCCCCCCCCCCHHHH
Q ss_conf 89999999999997210152232103--44599999-999985157899-8333478998-----766467761103888
Q 001855 290 TRHLAIEFVITLAEARERAPGMMRKL--PQFINRLF-AILMSMLLDIED-DPLWHSAETE-----DEDAGESSNYSVGQE 360 (1004)
Q Consensus 290 ir~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~l~-~~l~~~l~~~~~-~~~~~~~~~~-----~~d~~~~~~~~~a~~ 360 (1004)
++..++++|..+++.+. ....+ .+++..++ +.+++.|...++ ...|..++++ .++++.++.+.++..
T Consensus 308 ~~~~al~fl~~~~~~~~----~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~ 383 (960)
T 1wa5_C 308 LVSKSLSFLTAVTRIPK----YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTD 383 (960)
T ss_dssp HHHHHHHHHHHHHTSHH----HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHH----HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999999968676----89987685189999999968734888878998844999999863575512371889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHH---CHHHHHH-----HHHHH-HHHHHH
Q ss_conf 999999763997426788877988426------98966899999999999933---2999998-----29999-999984
Q 001855 361 CLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEG---CAKVMVK-----NLEQV-LSMVLN 425 (1004)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~---~~~~~~~-----~l~~i-~~~l~~ 425 (1004)
++..++..++ +.+++.+++++.+.++ +++|+.|++|+.++|.++++ +...... .+..+ ...+.+
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999701-327899999999999873669612179999999999999987412567741234435699999997378
Q ss_pred HCCCC---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC----------
Q ss_conf 07999---86489999999998664320558863243169999951379999469999999999986018----------
Q 001855 426 SFRDP---HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC---------- 492 (1004)
Q Consensus 426 ~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~---------- 492 (1004)
.+.++ ++.||.+++|+++++++++. ..++..+++.+++.+.+ +++.|+.+|+.++..+++..
T Consensus 463 ~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 463 DLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HHCCCCCCCCEEHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7449988883303989999999886589----99999999999998489-972199999999999984436444665443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHH
Q ss_conf 965433756899999999852387-----5499999999999999837655853845668899998510-7621001357
Q 001855 493 TPEILTPYLDGIVSKLLVLLQNGK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRA 566 (1004)
Q Consensus 493 ~~~~l~~~~~~i~~~l~~~l~~~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~l~~ 566 (1004)
..+.+.||++.+++.|+.+++... ....+.++.+++.++...++.+.||++.+++.+...+... .++++..++.
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~ 617 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTH 617 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 59875646999999999999714678776432279999999999988886124799999999999999973989727889
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH--HHCC
Q ss_conf 99999999996418343355499999999998268899997013699999999996801685332265359999--9705
Q 001855 567 KSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL--QSAQ 644 (1004)
Q Consensus 567 ~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~i~~~ll--~~~~ 644 (1004)
.+++|++.++++.+++.+.++.+.+++.+........ ....++++..++.+.... ..+.+|+..+.+.++ ..+.
T Consensus 618 ~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~ 693 (960)
T 1wa5_C 618 YTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWE 693 (960)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCHHHHC
T ss_conf 9999999999638953699999999999999998605---766999999999999735-478899999999980999855
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCC--CCHHHCCCCEEEEECHHHH---HHHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
Q ss_conf 699832257898--76434688854--1022028913553011698---8999999999999994001-51319988987
Q 001855 645 LKPDVTITSADS--DNEIEDSDDDS--METITLGDKRIGIKTSVLE---EKATACNMLCCYADELKEG-FFPWIDQVAPT 716 (1004)
Q Consensus 645 ~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~---~~~~a~~~l~~l~~~~~~~-~~p~~~~~~~~ 716 (1004)
.. +.. ..--. +.-.....++- ++.. .++-...+. .+..++.+++.++..++.. |.||++.+++.
T Consensus 694 ~~-~~~-~~~~~~L~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~ 765 (960)
T 1wa5_C 694 LK-GNI-PAVTRLLKSFIKTDSSIFPDLVPV------LGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVL 765 (960)
T ss_dssp CT-TTH-HHHHHHHHHHHHHHGGGCSCSHHH------HHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH
T ss_pred CC-CCC-HHHHHHHHHHHHHCHHHHHHHHHH------HHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 77-873-558999999997684999999999------9999999679942035999999999979877789889999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5102476589779999998499999
Q 001855 717 LVPLLKFYFHEEVRKAAVSAMPELL 741 (1004)
Q Consensus 717 l~~~~~~~~~~~vr~~a~~~l~~l~ 741 (1004)
++..+.....+.+++..+..+..++
T Consensus 766 l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 766 LLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999831774749999999999999
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=392.60 Aligned_cols=708 Identities=13% Similarity=0.152 Sum_probs=495.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99178999999933999388899999998864039159999999998069997789889999997603588874567898
Q 001855 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1004)
Q Consensus 19 ~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1004)
+|.+++.+++..+++||++.|++|+++|+++++ +|+.| ..+.+++..+.++.+|++|++.|++.++.+ |..+++
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~~ 77 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH----WHEVPP 77 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC----GGGCCG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----HHHCCH
T ss_conf 559999999998769999999999999999874-97989-999999835994989999999999999715----864999
Q ss_pred HHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC------CHHHHHHHHHHHHHH
Q ss_conf 789999999989994164--176999999999999842169999512799999951299------866788999999992
Q 001855 99 HTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD------SVKLQESAFLIFAQL 170 (1004)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~--~~~vr~~~~~~i~~i~~~~~~~~~~~~ll~~L~~~l~~~------~~~~r~~al~~l~~i 170 (1004)
+.++.+|+.+++.+.... ++.+|+.++.+++.|+++++| .||++++.+.+.++++ ++..++.++.+|..+
T Consensus 78 ~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 78 ENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999986799878999999999999997062--2437999999997153345678788999999999985
Q ss_pred HHHHH------------HHCCCCHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHH--HCCC----------
Q ss_conf 56674------------210000999999999853699994-------8999999999999983--0691----------
Q 001855 171 SQYIG------------DTLTPHLKHLHAVFLNCLTNSNNP-------DVKIAALNAVINFIQC--LTSS---------- 219 (1004)
Q Consensus 171 ~~~~~------------~~~~~~~~~l~~~l~~~l~~~~~~-------~vr~~a~~~l~~~~~~--~~~~---------- 219 (1004)
++++. +.+...++.+++.+.+.+.+..+. .++..+++|+..++.. .+..
T Consensus 156 ~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~ 235 (971)
T 2x1g_F 156 PEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL 235 (971)
T ss_dssp HHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99882468578999999999987999999999998554678888642367999999999998257838656631999998
Q ss_pred --------------------C-----------------------HHHHHHHHHHHHHHHHHHH---HHCCCH---HHHHH
Q ss_conf --------------------1-----------------------1767973699999999999---835995---68999
Q 001855 220 --------------------A-----------------------DRDRFQDLLPLMMRTLTES---LNNGNE---ATAQE 250 (1004)
Q Consensus 220 --------------------~-----------------------~~~~~~~~~~~il~~l~~~---l~~~~~---~~~~~ 250 (1004)
. ....+..++|.++...... ..+.+. +....
T Consensus 236 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 236 EVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp HHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 64355302323566555676774799999999999976801132088999999999986899999985656540689999
Q ss_pred HHHHHHHHHCCCHHHHH-----------HHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHH-H-----CCCH
Q ss_conf 99999998720209889-----------93999999999962378---754578999999999999721-0-----1522
Q 001855 251 ALELLIELAGTEPRFLR-----------RQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR-E-----RAPG 310 (1004)
Q Consensus 251 a~~~L~~l~~~~~~~~~-----------~~~~~i~~~l~~~~~~~---~~~~~ir~~a~~~l~~l~~~~-~-----~~~~ 310 (1004)
.++++..+++.++..+. +++..+++.++.....+ ..+++++..++++|..+++.. . ..+.
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999999999873157653549999999999999758888886312458789999999999974133100089
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--
Q ss_conf 321034459999999998515789983334789987664677611038889999997639974267888779884269--
Q 001855 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-- 388 (1004)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-- 388 (1004)
......+++..+++.++..+..++++ +|...+. +++++..+.++.+..++..++...+ +.+++.+++.+.+.+.+
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~~-~~~~~d~-~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDEK-SLAKWSS-DDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQ 472 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTT-TTSCSCH-HHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999986199962-4335677-5799999999999999999999970-9999999999999997346
Q ss_pred ---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf ---8966899999999999933299999829999999984079--99864899999999986643205588632431699
Q 001855 389 ---PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1004)
Q Consensus 389 ---~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1004)
.+|+.|++++.+++.+++++.....++++.+++.+ ..+. |+++.||..++++++++++++.... +|++.+++
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~ 549 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAIN 549 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHH
T ss_conf 89873899999999999998354803347799999999-8567653678999999999998788886088--98999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 999513799994699999999999860189654337568999999998523--875499999999999999837-65585
Q 001855 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-EHFQK 540 (1004)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~-~~~~~ 540 (1004)
.++..+ + +.|+..|+.++..+++.++ ..+.||++.+++.+...+++ .+...+..++.+++.++...+ +.+.+
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHH-C---HHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 999874-8---5889999999999999988-8623007999999999972789992899999999999997299999999
Q ss_pred HHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 38456688999985107-----621001357999999999964183------------4335549999999999826889
Q 001855 541 YYDAVMPFLKAILVNAT-----DKSNRMLRAKSMECISLVGMAVGK------------DKFRDDAKQVMEVLMSLQGSQM 603 (1004)
Q Consensus 541 ~~~~i~~~l~~~l~~~~-----~~~~~~l~~~a~~~l~~l~~~~~~------------~~~~~~~~~i~~~l~~l~~~~~ 603 (1004)
|+..+++.+...+.... +++.......++.+++.+..+++. +.+.++.+.+++.+..+... .
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~ 703 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM-W 703 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-C
T ss_conf 999999899999999985689982259999999999999984167776853334567883699999999999999986-4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECH
Q ss_conf 99970136999999999968016853322653599999705699832257898764346888541022028913553011
Q 001855 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTS 683 (1004)
Q Consensus 604 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1004)
..+..+.+.++.+++.++..+|+.+.||++.+++.++..+...+.
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----------------------------------- 748 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC----------------------------------- 748 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-----------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-----------------------------------
T ss_conf 363789999999999999861440425278999999999866883-----------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCCHHHH----HHHHCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6988999999999999994001--51319988----9875102476------5897799999984999999999999808
Q 001855 684 VLEEKATACNMLCCYADELKEG--FFPWIDQV----APTLVPLLKF------YFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1004)
Q Consensus 684 ~~~~~~~a~~~l~~l~~~~~~~--~~p~~~~~----~~~l~~~~~~------~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 751 (1004)
..++.+++.++...+.+ +.+.+..+ +..+...+.. ..++++++..+..+..++..+.....
T Consensus 749 -----~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~-- 821 (971)
T 2x1g_F 749 -----APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLE-- 821 (971)
T ss_dssp -----HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGG--
T ss_pred -----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHC--
T ss_conf -----4999999999999588900589999999999999999986065467764844899999999999986859981--
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999997999999-9999999999970199298999999999999998
Q 001855 752 LAPGRNESYVKQL-SDFIIPALVEALHKEPDTEICASMLDSLNECIQI 798 (1004)
Q Consensus 752 ~~~~~~~~~~~~~-~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 798 (1004)
.+ +. +..+++..+..+... ++.....++..+..++..
T Consensus 822 -----~s----~~~l~~i~~~~~~~l~~~-~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 822 -----DK----TLAYDRLVFYAQRGMTLP-ESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp -----CT----TSCHHHHHHHHHHHHTSS-CSSHHHHHHHHHHHHHHH
T ss_pred -----CC----CCCHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHC
T ss_conf -----88----212899999999982878-778999999999999860
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=391.88 Aligned_cols=712 Identities=17% Similarity=0.212 Sum_probs=510.7
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9991789999999-339993888999999988640391599999999980699977898899999976035888745678
Q 001855 18 GPDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1004)
Q Consensus 18 ~~d~~~l~~ll~~-~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l 96 (1004)
.+|.+++.+++.. ..++|++.|++|+++|+++++ +|+.| ..+..++.++.++.+|++|++.|++.++.+ |..+
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l 93 (963)
T 2x19_B 20 DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY----WSDI 93 (963)
T ss_dssp CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC----GGGS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----HHHC
T ss_conf 75599999999998359798999999999999846-99999-999998657972588999999999999738----8749
Q ss_pred CHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC-----CCHHHHHHHHHHHHH
Q ss_conf 98789999999989994164--17699999999999984216999951279999995129-----986678899999999
Q 001855 97 SLHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQ 169 (1004)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~~~--~~~vr~~~~~~i~~i~~~~~~~~~~~~ll~~L~~~l~~-----~~~~~r~~al~~l~~ 169 (1004)
+++.+..||+.+++.+.... ++.+|+.++.+++.|++.++| ..||++++.+.+.+++ ++...+..++.+|..
T Consensus 94 ~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 94 PTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999987489889999999999999987483-115559999999986433578747889999999986
Q ss_pred HHHHHH-------------HHCCCCHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHH---------------------
Q ss_conf 256674-------------210000999999999853699994-899999999999998---------------------
Q 001855 170 LSQYIG-------------DTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAVINFIQ--------------------- 214 (1004)
Q Consensus 170 i~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l~~~~~--------------------- 214 (1004)
++++.. +.+...++.+++.+...+.+..+. .++..+++|+..++.
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~ 252 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQD 252 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTS
T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 89988506586999999999999878899999999982778805799999999999982899853416899999998679
Q ss_pred ----------------HHCCCCHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH------HH
Q ss_conf ----------------306911176797369999999---99998359956899999999998720209889------93
Q 001855 215 ----------------CLTSSADRDRFQDLLPLMMRT---LTESLNNGNEATAQEALELLIELAGTEPRFLR------RQ 269 (1004)
Q Consensus 215 ----------------~~~~~~~~~~~~~~~~~il~~---l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~ 269 (1004)
..........+..+++.++.. +.......+.+.....++++..+++.++..+. ++
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 332 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQS 332 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 64799999999999753112457799999999997407999999987798999999999999999869999737556589
Q ss_pred HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHCC-----CHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999999962378---754578999999999999721015-----223210344599999999985157899833347
Q 001855 270 LVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARERA-----PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1004)
Q Consensus 270 ~~~i~~~l~~~~~~~---~~~~~ir~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1004)
+..+++.++.....+ ..++.++..++++|..+++..... +.......+++..+++.++..+..+++ .+|..
T Consensus 333 ~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~-~~~~~ 411 (963)
T 2x19_B 333 FLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSD-EEYGF 411 (963)
T ss_dssp HHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH-HHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC
T ss_conf 99999999999758888872034544129999999999986234445788999999999999999999809983-02267
Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 89987664677-6110388899999976399742678887798842----698966899999999999933299999829
Q 001855 342 AETEDEDAGES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1004)
Q Consensus 342 ~~~~~~d~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1004)
.++ | +.+++ ..++.+.+++..++...+ +.+++.+++.+.+.+ .+.+|+.|+++++++|.+++++.....+++
T Consensus 412 ~~~-d-e~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l 488 (963)
T 2x19_B 412 WSS-D-EKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVV 488 (963)
T ss_dssp SCH-H-HHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHH
T ss_pred CCH-H-HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 776-3-899999999999999999999706-8999999999999997257998667998999999999704382246789
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998407999864899999999986643205588632431699999513799994699999999999860189654
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 496 (1004)
+.+++.+. .+.++++.||..++++++++++++.... ++++.+++.++..+.+ +.|+..|+.++..+++.++ ..
T Consensus 489 ~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~-~~ 561 (963)
T 2x19_B 489 PGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECK-YD 561 (963)
T ss_dssp HHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTG-GG
T ss_pred HHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHH-HH
T ss_conf 99999998-5799858999999999998888887588--9899999999987178---4689999999999999989-98
Q ss_pred CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q ss_conf 337568999999998523--875499999999999999837-655853845668899998510----7621001357999
Q 001855 497 LTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKSM 569 (1004)
Q Consensus 497 l~~~~~~i~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~----~~~~~~~l~~~a~ 569 (1004)
+.||++.+++.+...+.. .+...+..++.+++.++...+ +.+.+|+..+++.+...+... .+++....+...+
T Consensus 562 l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l 641 (963)
T 2x19_B 562 LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHIL 641 (963)
T ss_dssp CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 77669999999999863578984889999999999996299999999999999899999999982789877899999999
Q ss_pred HHHHHHHHHHCH---------------------HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999964183---------------------43355499999999998268899997013699999999996801685
Q 001855 570 ECISLVGMAVGK---------------------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF 628 (1004)
Q Consensus 570 ~~l~~l~~~~~~---------------------~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 628 (1004)
+|++.++++++. +.+.++.+.+++.+..+..... .+..+.+.++.+++.++..+|+.+
T Consensus 642 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~ 720 (963)
T 2x19_B 642 GLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF 720 (963)
T ss_dssp HHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999774898643322232212477778899469999999999999998566-746899999999999997501034
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHC--CCC
Q ss_conf 332265359999970569983225789876434688854102202891355301169889999999999999940--015
Q 001855 629 LPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK--EGF 706 (1004)
Q Consensus 629 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~l~~l~~~~~--~~~ 706 (1004)
.||+|.+++.++......+. ...+.+++.++...+ ..+
T Consensus 721 ~~~l~~~~~~l~~~~~~~~~----------------------------------------~~~l~l~~~li~~f~~~~~~ 760 (963)
T 2x19_B 721 APMVPQLCEMLGRMYSTIPQ----------------------------------------ASALDLTRQLVHIFAHEPAH 760 (963)
T ss_dssp GGGHHHHHHHHHHHHHHSCC----------------------------------------HHHHHHHHHHHHHHTTCTTT
T ss_pred CCCHHHHHHHHHHHHHCCCC----------------------------------------CHHHHHHHHHHHHHCCCCCH
T ss_conf 24079999999999875785----------------------------------------08999999999985778013
Q ss_pred CCCHHHHHHHHCC----CCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 1319988987510----2476--58977999999849999999999998089999997999999-999999999997019
Q 001855 707 FPWIDQVAPTLVP----LLKF--YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL-SDFIIPALVEALHKE 779 (1004)
Q Consensus 707 ~p~~~~~~~~l~~----~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~l~~~~~~~ 779 (1004)
.|++..++..++. .+.. ...++++...+..+..++..+....- .+ +. ...+++.++..+. .
T Consensus 761 ~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~-------~~----~~~~~~i~~~~~~~l~-~ 828 (963)
T 2x19_B 761 FPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL-------CE----RLDVKAVFQCAVLALK-F 828 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG-------CT----TSCHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHC-------CC----CCCHHHHHHHHHHHCC-C
T ss_conf 7899999999999999998627655863899999999999975839872-------98----5147999999999757-8
Q ss_pred CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 929899999999999999839
Q 001855 780 PDTEICASMLDSLNECIQISG 800 (1004)
Q Consensus 780 ~~~~~~~~~~~~l~~~~~~~~ 800 (1004)
.++.+...++..+..++...+
T Consensus 829 ~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 829 PEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp SCHHHHHHHHHHHHHHGGGTT
T ss_pred CCHHHHHHHHHHHHHHHHCCC
T ss_conf 977999999999999985189
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=368.99 Aligned_cols=781 Identities=15% Similarity=0.157 Sum_probs=522.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCCCC------CCC
Q ss_conf 999778988999999760358887456789878999999998999416-4176999999999999842169------999
Q 001855 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP------ENG 140 (1004)
Q Consensus 68 ~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~i~~i~~~~~~------~~~ 140 (1004)
+.+..+|+.|...|++.- .+....+...+++.+.++ .+..+|..++..+...+...++ ...
T Consensus 12 s~d~~~r~~A~~~L~~~~------------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAA------------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CSCHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH------------HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 989899999999999987------------16804699999999857899879999999999876055434767899864
Q ss_pred CCHHH--------HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHH
Q ss_conf 51279--------9999951299866788999999992566742100009999999998536999-94899999999999
Q 001855 141 WPELL--------PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVIN 211 (1004)
Q Consensus 141 ~~~ll--------~~L~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~ 211 (1004)
|+.+- +.+.+.+.+++... ..+..+++.++..... ...++.+++.+...+.++. +..+|..++.++..
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 406999999999999999867994788-9999999999984676--2256889999999870889879999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHHHHHCCCCCC
Q ss_conf 99830691117679736999999999998359--95689999999999872020988993--999999999962378754
Q 001855 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLE 287 (1004)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~ 287 (1004)
++.... .+.+...++.+++.+...+.++ +..+|..+++++..++...+..+... ...+++.+.... .+.+
T Consensus 157 l~~~~~----~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--~~~~ 230 (876)
T 1qgr_A 157 ICQDID----PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT--QCPD 230 (876)
T ss_dssp HHHHSC----HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT--TCSS
T ss_pred HHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC
T ss_conf 987458----7667867999999999861679998899999999999999999998871789999999999871--7998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 578999999999999721015223210344599-9999999851578998333478998766467761103888999999
Q 001855 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFIN-RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1004)
Q Consensus 288 ~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~ 366 (1004)
.++|..+++++..+++. .+ +.+.+++. .+++.++..+.+. +...+..+.+.+..++
T Consensus 231 ~~vr~~a~~~l~~l~~~---~~---~~~~~~~~~~l~~~~~~~~~~~-----------------~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSL---YY---QYMETYMGPALFAITIEAMKSD-----------------IDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHHHHHHHHHHHH---SG---GGCHHHHTTTHHHHHHHHHTCS-----------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHHH
T ss_conf 89999999999999998---69---9999887789999999996387-----------------3499999999999998
Q ss_pred HHC-------------------CCCC----CHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 763-------------------9974----26788877988426-------98966899999999999933299999829
Q 001855 367 IAL-------------------GGNT----IVPVASEQLPAYLA-------APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1004)
Q Consensus 367 ~~~-------------------~~~~----~~~~l~~~l~~~l~-------~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1004)
... +... ....+++.+...+. +.+|.+|.++..+++.++..+++ ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 364 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHH
T ss_conf 87876766510011247775420189999989887079998753133444545217999999999999987758---669
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998407999864899999999986643205588632431699999513799994699999999999860189654
Q 001855 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1004)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 496 (1004)
+.+++.+...+.++++.+|.+++++++.+++..++....++++.+++.++..++| +++.||..|+++++.+++..+...
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCHHC
T ss_conf 9999999988469982899999999999974887778999999999999998679-978999999999999998572011
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf -3375689999999985238754999999999999998376558538456688999985107621001357999999999
Q 001855 497 -LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1004)
Q Consensus 497 -l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l 575 (1004)
..++++.+++.++..+.+. ..++..++.+++.++...++.. . .+ +++ .
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~--~------------~~--~~~---~----------- 492 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAA--D------------VA--DDQ---E----------- 492 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTT--S------------CT--TSC---C-----------
T ss_pred CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCC--C------------CC--CCC---C-----------
T ss_conf 44777999999999987588-8899999999999999850201--2------------34--444---5-----------
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC----CCCCCC
Q ss_conf 9641834335549999999999826889999701369999999999680168533226535999997056----998322
Q 001855 576 GMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQL----KPDVTI 651 (1004)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~i~~~ll~~~~~----~~~~~~ 651 (1004)
....+.+.||++.+++.+..........+..++..++.+++.++...|.++.+|+..+++.++..+.. ....
T Consensus 493 --~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-- 568 (876)
T 1qgr_A 493 --EPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHI-- 568 (876)
T ss_dssp --CCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSC--
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf --5540321576999999999997276742046999999999999997743118999999999999999999887124--
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCCCCCC-CHHH
Q ss_conf 5789876434688854102202891355301169889999999999999940-0151319988987510247658-9779
Q 001855 652 TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK-EGFFPWIDQVAPTLVPLLKFYF-HEEV 729 (1004)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~l~~l~~~~~-~~~~p~~~~~~~~l~~~~~~~~-~~~v 729 (1004)
. .+++. ....+.+..++.+++.++...+ ..+.||++.+++.++..+.... ...+
T Consensus 569 ~-----------~~~d~-------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 569 Q-----------STSDR-------------IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp C-----------STTHH-------------HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHH
T ss_pred C-----------CHHHH-------------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8-----------86359-------------99999999999999999998285420578999999999999853688885
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999849999999999998089999997999999999999999997019929899999999999999839999999899
Q 001855 730 RKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVR 809 (1004)
Q Consensus 730 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 809 (1004)
+..++.+++.++...+ ..+.+++..++|.+...+.+..+..++..++.++..+...+|..+ .
T Consensus 625 ~~~a~~~l~~l~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-----~ 686 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLG-------------GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI-----I 686 (876)
T ss_dssp HHHHHHHHHHHHHHHG-------------GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG-----H
T ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-----H
T ss_conf 0899999999999987-------------609999999999999987586508799999999999999887854-----6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999879999997305588867745634543559999999999999999980004136598989768532
Q 001855 810 SIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPM 889 (1004)
Q Consensus 810 ~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 889 (1004)
+.++.+.+.+...+. +.+ .+..++..+..+++.++...|+.+.+++..++|.+...
T Consensus 687 ~~~~~i~~~l~~~l~----------~~~--------------~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~ 742 (876)
T 1qgr_A 687 PFCDEVMQLLLENLG----------NEN--------------VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQA 742 (876)
T ss_dssp HHHHHHHHHHHHHHT----------CTT--------------SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC----------CCC--------------CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 459999999999748----------712--------------33876399999999999970352799999999999999
Q ss_pred HCCCC---C-------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHH
Q ss_conf 16999---8-------98999999979999877236----------57853574899999553799--936888887999
Q 001855 890 WGKDK---T-------AEERRIAICIFDDVAEQCRE----------AALKYYETYLPFLLEACNDE--NQDVRQAAVYGL 947 (1004)
Q Consensus 890 l~~~~---~-------~~~r~~al~~l~~l~~~~~~----------~~~~~~~~l~~~~~~~l~~~--~~~vr~~a~~~l 947 (1004)
+..+. + ...|..++.+++.+++..+. .+.||++.+++.+.....++ +..+|..|+.+|
T Consensus 743 ~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l 822 (876)
T 1qgr_A 743 SQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLI 822 (876)
T ss_dssp HTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 85558999758899999999999999999999974575555543889999999999999998658888889999999999
Q ss_pred HHHHHHCCC-CHHHH-HHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999863065-51788-9999999998-52599988810024688899999999764106
Q 001855 948 GVCAEFGGS-VVKPL-VGEALSRLNV-VIRHPNALQPENLMAYDNAVSALGKICQLFLH 1003 (1004)
Q Consensus 948 g~l~~~~~~-~~~~~-~~~~l~~L~~-~l~~~~~~~~~~~~~~~na~~a~~~l~~~~~~ 1003 (1004)
|.++...+. .+.+| .+.+++.|.. .+.++ +..+|..|+.|+|.+....++
T Consensus 823 ~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~------~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 823 GDLCTAFGKDVLKLVEARPMIHELLTEGRRSK------TNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp HHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCHHHHHHHHCHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998828488999970489999999875468------876899999999999975347
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=362.05 Aligned_cols=769 Identities=12% Similarity=0.140 Sum_probs=558.6
Q ss_pred CHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHH
Q ss_conf 15999999999806--9997789889999997603588874567898789999999989994--1641769999999999
Q 001855 54 PDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ--LESAKSISKKLCDTVS 129 (1004)
Q Consensus 54 p~~~~~~L~~il~~--~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~--~~~~~~vr~~~~~~i~ 129 (1004)
|+. +..+.+++.. +++..+|+.|-..|++. .. .++.... +...+. ...+..+|..++..+.
T Consensus 9 ~~~-~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~---------~~-~p~~~~~----l~~il~~~~~~~~~vR~~a~~~Lk 73 (852)
T 4fdd_A 9 EQG-LQQILQLLKESQSPDTTIQRTVQQKLEQL---------NQ-YPDFNNY----LIFVLTKLKSEDEPTRSLSGLILK 73 (852)
T ss_dssp HHH-HHHHHHHHHHHTCSCHHHHHHHHHHHHHH---------TT-SHHHHHH----HHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HH-CCCHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 423-99999999987394989999999999998---------70-9988999----999985668898679999999999
Q ss_pred HHHHCCCCC---CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 998421699---99512799999951299866788999999992566742100009999999998536999948999999
Q 001855 130 ELASNILPE---NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAAL 206 (1004)
Q Consensus 130 ~i~~~~~~~---~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~ 206 (1004)
..++..|.. ..-..+.+.+.+.+.+++..+|..+..+++.+....+. ..++++++.+.+.+.++ +..+|..++
T Consensus 74 n~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~-~~~~r~~al 149 (852)
T 4fdd_A 74 NNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSE-DYNTCEGAF 149 (852)
T ss_dssp HHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCS-SHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHCCC-CHHHHHHHH
T ss_conf 98987447799999999999999987499899999999999999986481---35689999999987099-989999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998306911176797369999999999983599568999999999987202098899399999999996237875
Q 001855 207 NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL 286 (1004)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 286 (1004)
.+++.+++..............++.+++.+...+++++..+|..+++++..++...+..+.++++.+++.++.... +.
T Consensus 150 ~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~--d~ 227 (852)
T 4fdd_A 150 GALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG--DE 227 (852)
T ss_dssp HHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC--CC
T ss_conf 9999999985787563431332999999999985679789999999999999864638799889999999998717--99
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 45789999999999997210152232103445999999999851578998333478998766467761103888999999
Q 001855 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1004)
Q Consensus 287 ~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~l~~l~ 366 (1004)
++.+|..+++++..+++. .+. .+.+++..+++.+...+.+. +...+..+.+.+..++
T Consensus 228 ~~~vr~~a~~~L~~l~~~---~~~---~~~~~l~~l~~~l~~~~~~~-----------------~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 228 EPEVRKNVCRALVMLLEV---RMD---RLLPHMHNIVEYMLQRTQDQ-----------------DENVALEACEFWLTLA 284 (852)
T ss_dssp CHHHHHHHHHHHHHHHHH---CHH---HHGGGHHHHHHHHHHHHTCS-----------------SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHH---CHH---HHHHHHHHHHHHHHHHCCCC-----------------CHHHHHHHHHHHHHHH
T ss_conf 778999999999999985---779---89988999999999870699-----------------6899999999999986
Q ss_pred HHCC----CCCCHHHHHHHHHHHH-----------CC-----------CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 7639----9742678887798842-----------69-----------89668999999999999332999998299999
Q 001855 367 IALG----GNTIVPVASEQLPAYL-----------AA-----------PEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1004)
Q Consensus 367 ~~~~----~~~~~~~l~~~l~~~l-----------~~-----------~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1004)
+... -....+.+++.+...+ .+ .+|.+|.++..+++.++...++ ..++.++
T Consensus 285 ~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~ 361 (852)
T 4fdd_A 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHIL 361 (852)
T ss_dssp TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHH
T ss_conf 0365798878889889999998757867679986698443222456401116999999999999874618---7899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99984079998648999999999866432055886324316999995137999946999999999998601896543375
Q 001855 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1004)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~ 500 (1004)
+.+...+.++++.+|.+|+++++.+++..+..+ .++++.+++.++..++| +++.||..++++++.+++..+.....+|
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~-~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 439 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTY 439 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH-GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999998559988999999999999986356889-98799999999987179-9889999999999999988611047899
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 68999999998523875499999999999999837655853845668899998510762100135799999999996418
Q 001855 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1004)
Q Consensus 501 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l~~~a~~~l~~l~~~~~ 580 (1004)
+..+++.++..+.+.++.+|..++.+++.++...+..+.||++.+++.+...+..... .....++++++.++..+|
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~----~~~~~~~~ai~~l~~~~~ 515 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH----KNLLILYDAIGTLADSVG 515 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999985898889999999999999973676676799999999999988374----799999999999999742
Q ss_pred HHHH-HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf 3433-5549999999999826889999701369999999999680168533226535999997056998--322578987
Q 001855 581 KDKF-RDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD--VTITSADSD 657 (1004)
Q Consensus 581 ~~~~-~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~i~~~ll~~~~~~~~--~~~~~~~~~ 657 (1004)
+... .+|.+.+++.+++.++.-.+.+... ..++.+++.++..+|..|.||++.+++.+++.+...-. .....+.+
T Consensus 516 ~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~- 593 (852)
T 4fdd_A 516 HHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD- 593 (852)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 431367899998899999987333046999-999999999999974867988999999999999999999987533886-
Q ss_pred CCCCCCCCCCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 64346888541022028913553011698899999999999999400151319--9889875102476589779999998
Q 001855 658 NEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAAVS 735 (1004)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~vr~~a~~ 735 (1004)
. .+.++ .+.+..++++++.++..++..+.||+ ..+++.+..++.+. ...+|+.++.
T Consensus 594 -~---~~~~d-----------------~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~ 651 (852)
T 4fdd_A 594 -Q---YEAPD-----------------KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFA 651 (852)
T ss_dssp -T---SCCCC-----------------THHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred -C---CCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CHHHHHHHHH
T ss_conf -6---68876-----------------119999999997899987476998836771899999983899-8449999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 49999999999998089999997999999999999999997019929899999999999999839999999899999999
Q 001855 736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEI 815 (1004)
Q Consensus 736 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 815 (1004)
+++.++..+ +..+.+++..++|.+...+. ..+.+++..+..+++++....|..+. +++..+++.+
T Consensus 652 ~l~~l~~~~-------------~~~~~~~l~~~lp~l~~~l~-~~~~~v~~~a~~alg~i~~~~~~~~~-p~~~~il~~L 716 (852)
T 4fdd_A 652 LLGDLTKAC-------------FQHVKPCIADFMPILGTNLN-PEFISVCNNATWAIGEISIQMGIEMQ-PYIPMVLHQL 716 (852)
T ss_dssp HHHHHHHHC-------------GGGTGGGHHHHHHHHHHTCC-TTSHHHHHHHHHHHHHHHHHHGGGGG-GGTHHHHHHH
T ss_pred HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 999999981-------------68889879999999998769-42068999999999999997117678-7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999879999997305588867745634543559999999999999999980004136598989768532169998
Q 001855 816 KQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT 895 (1004)
Q Consensus 816 ~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 895 (1004)
.+.+.. .+ ....++++++.++|.++..+++.+.|++..+++.+...+....+
T Consensus 717 ~~~l~~--------------~~--------------~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d 768 (852)
T 4fdd_A 717 VEIINR--------------PN--------------TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRD 768 (852)
T ss_dssp HHHHTC--------------SS--------------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCS
T ss_pred HHHHCC--------------CC--------------CCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 998579--------------98--------------87207788999999999868897675589999999998653666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 989999999799998772365785357489999955379993688888
Q 001855 896 AEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAA 943 (1004)
Q Consensus 896 ~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~a 943 (1004)
.++|..++..+..++...+..+.+.+..++..+.+ ..++.++.++.-
T Consensus 769 ~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 815 (852)
T 4fdd_A 769 NEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVAS-WINPKDDLRDMF 815 (852)
T ss_dssp SHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHT-CSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCHHHHHHH
T ss_conf 07999999999999986918688889999999870-689978999999
No 10
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=361.70 Aligned_cols=721 Identities=14% Similarity=0.179 Sum_probs=492.2
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99917899999993399938889999999886403915999999999806999778988999999760358887456789
Q 001855 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1004)
Q Consensus 18 ~~d~~~l~~ll~~~~s~~~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~~r~~a~~~L~~~i~~~~~~~w~~l~ 97 (1004)
.+|.+++.+++..+++|+++.|++|+++|+++++ +|+.+ ..+.+++.++.++.+|++|++.||+.++++ |..++
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~~~-~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~----W~~l~ 85 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK----WKLLP 85 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STTGG-GGHHHHHHHCSCHHHHHHHHHHHHHHHHHT----GGGSC
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CCCCC
T ss_conf 4659999999999868993899999999999883-95699-999999862998899999999999999760----70499
Q ss_pred HHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8789999999989994164--------17699999999999984216999951279999995129986678899999999
Q 001855 98 LHTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (1004)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~--------~~~vr~~~~~~i~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~ 169 (1004)
++.+..||+.+++.+.+.. ++.+|+.++.+++.|++.++| +.||++++.+.+.++ .+...++.++.+|..
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_conf 999999999999999862776200000289999999999999997681-115479999999871-585889999999999
Q ss_pred HHHHHHH----------------HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-----------
Q ss_conf 2566742----------------1000099999999985369999489999999999999830691117-----------
Q 001855 170 LSQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR----------- 222 (1004)
Q Consensus 170 i~~~~~~----------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~----------- 222 (1004)
+++.+.+ .+...++.+++.+.+++.+..+..++..+++|+..++.+.+.....
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~ 243 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTK 243 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999872600132689999999999999999999999998668889999999999999860889988605599999998
Q ss_pred -------------------------------HHHHHHHHHHHHHHHH-----------HH---HCCCHHHHHHHHHHHHH
Q ss_conf -------------------------------6797369999999999-----------98---35995689999999999
Q 001855 223 -------------------------------DRFQDLLPLMMRTLTE-----------SL---NNGNEATAQEALELLIE 257 (1004)
Q Consensus 223 -------------------------------~~~~~~~~~il~~l~~-----------~l---~~~~~~~~~~a~~~L~~ 257 (1004)
..+..+++.++..+.. .. .+.+.+.....++.+..
T Consensus 244 ~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 244 FMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp HHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 68987679999999999994889950346889999999999999988627985417877445771028999999999999
Q ss_pred HHCCCHHH------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 87202098------899399999999996237875457899999999999972101522321034459999999998515
Q 001855 258 LAGTEPRF------LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1004)
Q Consensus 258 l~~~~~~~------~~~~~~~i~~~l~~~~~~~~~~~~ir~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1004)
+++.+... +.+++..+++.++..... .+++++..++++|..+++.-...+.......+++..+++.++..|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~ 401 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMV 401 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999828821479999999999998868--9089999999999999999974635899999999999999998658
Q ss_pred CCCCCCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH
Q ss_conf 78998333478998------7664677611038889999997639974267888779884269--896689999999999
Q 001855 332 DIEDDPLWHSAETE------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA--PEWQKHHAALIALAQ 403 (1004)
Q Consensus 332 ~~~~~~~~~~~~~~------~~d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~ 403 (1004)
+++ +.+|..+++. ++|+++++.++.+..++..++...+ ..+++.+.+.+.+.+++ .+|+.|+++++++|.
T Consensus 402 ~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 402 RPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 996-20000579985048653122279999999999999883698-9999999999998727787898999999999999
Q ss_pred HHHHCHHHH-HHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 993329999-9829999999984079-----9986489999999998664320558863243169999951379999469
Q 001855 404 IAEGCAKVM-VKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1004)
Q Consensus 404 l~~~~~~~~-~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1004)
+++.+.... ..+++.+++.+..... ++++.+|..++++++++++++... ..++..+++.++..+.+ +++.|
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~-~~~~V 556 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTS-SCHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC-CCHHH
T ss_conf 8602376255799999999999877654356654999988999999779999867--89999999999998618-98789
Q ss_pred HHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 9999999999860189654-------337568999999998523875499999999999999837--6558538456688
Q 001855 478 QAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPF 548 (1004)
Q Consensus 478 ~~~a~~~l~~l~~~~~~~~-------l~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~i~~~ 548 (1004)
+..||.++..+++.++... +.||++.++..+...+...+.......+.+++.++...+ +...+|+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999889861156778775799999989999985899999999999999997599789999999999988
Q ss_pred HHHHHHHCC--------CCCCH---HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC------------CC-C
Q ss_conf 999985107--------62100---135799999999996418343355499999999998268------------89-9
Q 001855 549 LKAILVNAT--------DKSNR---MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------------QM-E 604 (1004)
Q Consensus 549 l~~~l~~~~--------~~~~~---~l~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~------------~~-~ 604 (1004)
+...+.... ...+. ..-...+.|++.++.++| +.|.|++..++.-++.+... +. .
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~ 715 (1049)
T 3m1i_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA 715 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999873164640487999999999999999999856-788999999999999999999998999997058502
Q ss_pred CCCC-------HHHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 9970-------1369999999999680---16853322653599999705699832257898764346888541022028
Q 001855 605 TDDP-------TTSYMLQAWARLCKCL---GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1004)
Q Consensus 605 ~~~~-------~~~~~~~~l~~i~~~~---~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1004)
...+ ....+...+....... +..+.||++.++..++..... .....+ +
T Consensus 716 ~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~-~~~~~~--------------~------- 773 (1049)
T 3m1i_C 716 TKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDAR--------------D------- 773 (1049)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH-SCGGGC--------------C-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCC--------------C-------
T ss_conf 210889999999999999999999847977999998789999999998871-896323--------------6-------
Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC----C--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 91355301169889999999999999940015131998898751024----7--65897799999984999999999999
Q 001855 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL----K--FYFHEEVRKAAVSAMPELLRSAKLAI 748 (1004)
Q Consensus 675 ~~~~~i~~~~~~~~~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~~----~--~~~~~~vr~~a~~~l~~l~~~~~~~~ 748 (1004)
...+.+++.++...+..+.||+..++..+.... . ....+++|...+..++.++..+....
T Consensus 774 --------------~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l 839 (1049)
T 3m1i_C 774 --------------AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAF 839 (1049)
T ss_dssp --------------THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf --------------879999999999988760666899999999999999852421089999999999999998678999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8089999997999999999999999997019929899999999999999839
Q 001855 749 EKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (1004)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 800 (1004)
-. -.+.. ...++...+..+. .+++.+...++..+.+++...+
T Consensus 840 ~~-----~~~~~----~~~v~~~~~~al~-~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 840 LE-----LPPAA----FKLFVDAICWAFK-HNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HH-----SCHHH----HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHHHHHHH
T ss_pred HC-----CCHHH----HHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 75-----99999----9999999999947-9981699999999999999987
Done!