Query 001858
Match_columns 1003
No_of_seqs 710 out of 6379
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 16:34:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001858.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1154-1158//hhsearch_pdb/001858hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 699.7 36.5 605 30-645 7-757 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 536.0 27.6 493 100-606 50-556 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 502.8 37.6 562 64-629 4-627 (680)
4 4eco_A Uncharacterized protein 1.0 1 1 499.2 21.3 522 31-628 26-630 (636)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 491.3 25.2 478 30-604 264-843 (876)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 484.1 34.8 549 64-635 14-598 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 483.3 31.0 557 66-637 14-599 (606)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 479.2 34.3 529 80-621 8-594 (680)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 473.6 29.2 529 60-607 3-564 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 472.9 34.1 524 81-629 9-565 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=699.66 Aligned_cols=605 Identities=29% Similarity=0.464 Sum_probs=449.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCC---CC-------------
Q ss_conf 68997689999999983689989999999999997201489689999079999505787763---57-------------
Q 001858 30 ALSNETDRVALLAIKSQLQDPMGITSSWNNSINVCQWTGVTCGQRHPRVIQLYLRNQSVGGF---LS------------- 93 (1003)
Q Consensus 30 ~~~~~~~~~al~~~k~~~~~~~~~~~sW~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~g~---~~------------- 93 (1003)
+.+.++|++||++||+++.||. .+++|+.++|||.|+||+|+ .++|++|+|.+.++.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 6687899999999996678962-14687899987688413878--99278987789986775576696573168022467
Q ss_pred ----------CCCCCCCCCCEEECCCCCCCCCCCH--HHCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCEEECCCCCC
Q ss_conf ----------5556999886887478988888841--01044467588841632332469667-5788874441124544
Q 001858 94 ----------PYVGNLSFLRFINLASNNLHGEIPN--ELGRLSRLKVLVLDFNSFSGTIPSNL-SHCSNLINFSVRRNNL 160 (1003)
Q Consensus 94 ----------~~l~~l~~L~~L~L~~n~~~~~ip~--~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l 160 (1003)
+.++.+++|++|+|++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ ..+++|++|++++|++
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 86888678703324578899898989857870789678727889998989688267747977856388999898979835
Q ss_pred CCCCCCC---CC---------------------CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 6788820---00---------------------01124553882376346556999888887644210044367998422
Q 001858 161 TGEIPAY---IG---------------------YYWLKLENLNVAENQLTGQLPPSIGNISTLQQLGVGENKLYGIIPES 216 (1003)
Q Consensus 161 ~~~~p~~---~~---------------------~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 216 (1003)
++..|.. ++ ..+++|++|++++|.+++.+|. ++++++|++|++++|.+.+.+|..
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred CCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 8858715566435898898989788034657845478689898928827887711-126999998979488587816577
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCH
Q ss_conf 25799999176478668889998646784347720024567878832125863341433268523467686655533221
Q 001858 217 LGQLRDLNFLSVAENNFSGMLPPIFNISSLEQISLLTNRFEGRLPLNIGFNLPKLKILIVGQNNLTGSIPQSFSNASNLV 296 (1003)
Q Consensus 217 l~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 296 (1003)
+..+++|++|++++|.+.+..|.. .+++|+.|+++.|++.+.+|..++..+++|++|++++|.+++.+|..+.++++|+
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 744888898989888665716724-3687898979178557725888884468688998968967784236775587766
Q ss_pred HHHCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCC-CCCCCCHHHH-------------------HHHCC--CCCCCEEE
Q ss_conf 0112386245755766-677784447854788899-9998871457-------------------52127--77774752
Q 001858 297 ILNLSGNHFSGKVGID-FSSLPNITRLNLGQNNLG-SGSIGDLDFI-------------------TLLTN--CSKLETLG 353 (1003)
Q Consensus 297 ~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~~~~~~~~~~-------------------~~l~~--l~~L~~L~ 353 (1003)
+|++++|.+.+..+.. +..+++|++|++++|.+. ..+.. +... ..+.. +++|++|+
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH-HHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEE
T ss_conf 77897885257379788724888878848478437623098-98632277199862787478767666533247761898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 46767899885000035620201154644557631002587873489813654211278751111333501033511152
Q 001858 354 LNSNRFGGSLPRSIANLSTITIIAMGLNQISGTIPLEIRNLANIYALGLEYNQLTGTIPYTIGELINLQALDFSANNLHG 433 (1003)
Q Consensus 354 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 433 (1003)
+++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCC
T ss_conf 97784654248777568987989895884668546777449988989897881547189788287773299901995137
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCC----------
Q ss_conf 2564433777656462556536656894354899987265268320699954465213322223488773----------
Q 001858 434 IIPDSIGNLSTLNSLWLGFNNLQGNIPSSLGNCKNLMLLNVSKNKLTGTLPPQILEITTLSSLLDLSSNL---------- 503 (1003)
Q Consensus 434 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~l~L~~n~---------- 503 (1003)
..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+..+. .+++++|.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC-EEECCSSEEESBCCGGGG
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCC-EEECCCCCCCCCCCHHHH
T ss_conf 5887881699899897539951896876885689999898978943374887770889899-898988846882795786
Q ss_pred ------------------------------------------------------------CCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------------------------------------------------------33654311233333430024
Q 001858 504 ------------------------------------------------------------ISGSIPLVVGNLKNLIQLDI 523 (1003)
Q Consensus 504 ------------------------------------------------------------l~~~~~~~~~~l~~L~~L~L 523 (1003)
+++.+|..++.+++|+.||+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEEC
T ss_conf 04212232013454211113444322223322210013556323200232110011331004627433403356657978
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 33412223685346756663899338876334780000446768651467530368930003799633485589935236
Q 001858 524 SRNRFSGEIPTTLSSCTSLEYLKMQDNSFRGSIPSSLISLKSIEVLDLSCNNLSGQIPEYLEDLSFLEYLNLSYNDFEGQ 603 (1003)
Q Consensus 524 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 603 (1003)
++|++++.+|..++.++.|+.|+|++|++++.+|..+..+++|+.|||++|++++.+|..+..+++|++|++++|+++|.
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 58801555877884141578784868803887896784777899898978802386886775788789787968815560
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899996678752011269875689777789977899999653
Q 001858 604 VPTKGVFSNKTRISLIENGKLCGGLDELHLPACHNTRPRKAK 645 (1003)
Q Consensus 604 ~~~~~~~~~~~~~~~~~n~~~c~~~~~l~~~~~~~~~~~~~~ 645 (1003)
+|..++|..+...++.+|+.+||.+. +.|.......+.
T Consensus 720 iP~~~~~~~~~~~~~~gN~~Lcg~~l----~~C~~~~~~~~~ 757 (768)
T 3rgz_A 720 IPEMGQFETFPPAKFLNNPGLCGYPL----PRCDPSNADGYA 757 (768)
T ss_dssp CCSSSSGGGSCGGGGCSCTEEESTTS----CCCCSCC-----
T ss_pred CCCCHHHCCCCHHHHCCCCHHCCCCC----CCCCCCCCCCCC
T ss_conf 89960102489777569832108877----678887668889
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=536.02 Aligned_cols=493 Identities=29% Similarity=0.475 Sum_probs=445.4
Q ss_pred CCCCEEECCCCCCCCC---CCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCC
Q ss_conf 9886887478988888---841010444675888416323324696675788874441124544678882--00001124
Q 001858 100 SFLRFINLASNNLHGE---IPNELGRLSRLKVLVLDFNSFSGTIPSNLSHCSNLINFSVRRNNLTGEIPA--YIGYYWLK 174 (1003)
Q Consensus 100 ~~L~~L~L~~n~~~~~---ip~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~~~~~ 174 (1003)
.+++.|+|+++.+.|. +|+.++.++.|+.++++.+.+. .+|+.++.+++|++|+|++|.++|.+|. .++.+ ++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC-TT
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCC-CC
T ss_conf 92789877899867755766965731680224678688867-87033245788998989898578707896787278-89
Q ss_pred CCEEECCCCCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 5538823763465569998-88887644210044367998422---2579999917647866888999864678434772
Q 001858 175 LENLNVAENQLTGQLPPSI-GNISTLQQLGVGENKLYGIIPES---LGQLRDLNFLSVAENNFSGMLPPIFNISSLEQIS 250 (1003)
Q Consensus 175 L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~ 250 (1003)
|++|++++|.+++.+|..+ +++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+. ..+++|+.|+
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~ 206 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLD 206 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEE
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC-CCCCCCCEEE
T ss_conf 998989688267747977856388999898979835885871556643589889898978803465784-5478689898
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 00245678788321258633414332685234676866555332210112386245755766677784447854788899
Q 001858 251 LLTNRFEGRLPLNIGFNLPKLKILIVGQNNLTGSIPQSFSNASNLVILNLSGNHFSGKVGIDFSSLPNITRLNLGQNNLG 330 (1003)
Q Consensus 251 l~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 330 (1003)
+++|++.+.+|. ++ ++++|++|++++|.+++.+|..+..+++|++|++++|.+.+..+.. .+++|++|++++|.+.
T Consensus 207 Ls~n~l~~~~~~-l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 207 VSSNNFSTGIPF-LG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp CCSSCCCSCCCB-CT-TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred CCCCCCCCCCCC-CC-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCC
T ss_conf 928827887711-12-6999998979488587816577744888898989888665716724--3687898979178557
Q ss_pred -CCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCC
Q ss_conf -999887145752127777747524676789988500003562020115464455763100-258787348981365421
Q 001858 331 -SGSIGDLDFITLLTNCSKLETLGLNSNRFGGSLPRSIANLSTITIIAMGLNQISGTIPLE-IRNLANIYALGLEYNQLT 408 (1003)
Q Consensus 331 -~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 408 (1003)
.++.. ....+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.
T Consensus 283 ~~ip~~------~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 283 GEIPDF------LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp ESCCCC------SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred CCCCHH------HHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
T ss_conf 725888------88446868899896896778423677558776677897885257379788724888878848478437
Q ss_pred CCCCCCCCCCC-CCCEECCCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 12787511113-3350103351115225644337--77656462556536656894354899987265268320699954
Q 001858 409 GTIPYTIGELI-NLQALDFSANNLHGIIPDSIGN--LSTLNSLWLGFNNLQGNIPSSLGNCKNLMLLNVSKNKLTGTLPP 485 (1003)
Q Consensus 409 ~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 485 (1003)
+.+|..+..++ +|+.|++++|.+.+..|..+.. +++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 62309898632277199862787478767666533247761898977846542487775689879898958846685467
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 46521332222348877333654311233333430024334122236853467566638993388763347800004467
Q 001858 486 QILEITTLSSLLDLSSNLISGSIPLVVGNLKNLIQLDISRNRFSGEIPTTLSSCTSLEYLKMQDNSFRGSIPSSLISLKS 565 (1003)
Q Consensus 486 ~~~~~~~l~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 565 (1003)
.+..+..+. .+++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++
T Consensus 437 ~l~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSLSKLR-DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGCTTCC-EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHCCCCCC-EEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 774499889-8989788154718978828777329990199513758878816998998975399518968768856899
Q ss_pred CCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 68651467530368930003799633485589935236899
Q 001858 566 IEVLDLSCNNLSGQIPEYLEDLSFLEYLNLSYNDFEGQVPT 606 (1003)
Q Consensus 566 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 606 (1003)
|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|.
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 99898978943374887770889899898988846882795
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=502.77 Aligned_cols=562 Identities=20% Similarity=0.224 Sum_probs=471.5
Q ss_pred CCEEEEEECCC---------CCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCC
Q ss_conf 72014896899---------990799995057877635755569998868874789888888410104446758884163
Q 001858 64 CQWTGVTCGQR---------HPRVIQLYLRNQSVGGFLSPYVGNLSFLRFINLASNNLHGEIPNELGRLSRLKVLVLDFN 134 (1003)
Q Consensus 64 c~w~gv~c~~~---------~~~v~~l~l~~~~~~g~~~~~l~~l~~L~~L~L~~n~~~~~ip~~~~~l~~L~~L~L~~n 134 (1003)
|.++.|.|... ..+++.|+|.++.+++..+..+..+++|++|+|++|.+.+..|..++++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 23324696675788874441124544678882000011245538823763465569998888876442100443679984
Q 001858 135 SFSGTIPSNLSHCSNLINFSVRRNNLTGEIPAYIGYYWLKLENLNVAENQLTGQLPPSIGNISTLQQLGVGENKLYGIIP 214 (1003)
Q Consensus 135 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 214 (1003)
.+++..+..++.+++|++|++++|++++..|..++. +++|++|++++|.+++..|..++++++|++|++++|.+++..+
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT-CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC-CCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 567568545303888898989899668539667415-6788889898995246672111245567779745884365297
Q ss_pred CCCC--CCCCCCEEECCCCCCCCCCCCC-CCC---------------------------CCHHHHHHCCCCCCCCCCCCC
Q ss_conf 2225--7999991764786688899986-467---------------------------843477200245678788321
Q 001858 215 ESLG--QLRDLNFLSVAENNFSGMLPPI-FNI---------------------------SSLEQISLLTNRFEGRLPLNI 264 (1003)
Q Consensus 215 ~~l~--~l~~L~~L~l~~N~l~~~~~~~-~~l---------------------------~~L~~L~l~~n~l~~~~p~~~ 264 (1003)
..+. .+++|++|++++|.+++..+.. ..+ ++|+.|++++|.+.+..|..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
T ss_conf 88624466632179888982565581555322344554305664680567778777531510088745774364686675
Q ss_pred CCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC----CCCCHH
Q ss_conf 258633--41433268523467686655533221011238624575576667778444785478889999----988714
Q 001858 265 GFNLPK--LKILIVGQNNLTGSIPQSFSNASNLVILNLSGNHFSGKVGIDFSSLPNITRLNLGQNNLGSG----SIGDLD 338 (1003)
Q Consensus 265 ~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~ 338 (1003)
. .++. |+.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|..... ....+.
T Consensus 243 ~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 243 L-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp G-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred H-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCC
T ss_conf 1-467677888778788767568021167410568557788567658656267888557736331321333335545438
Q ss_pred HHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCC--CCCCEEECCCCCCCCCCCCC
Q ss_conf 575212777774752467678998850000356202011546445576--31002587--87348981365421127875
Q 001858 339 FITLLTNCSKLETLGLNSNRFGGSLPRSIANLSTITIIAMGLNQISGT--IPLEIRNL--ANIYALGLEYNQLTGTIPYT 414 (1003)
Q Consensus 339 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l--~~L~~L~L~~N~l~~~~~~~ 414 (1003)
...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+... ....+..+ ++|+.|++++|++++..+..
T Consensus 322 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 322 -DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp -TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred -HHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHH
T ss_conf -6562467778888798982687885574065687289887980144323532202455686766889999777677544
Q ss_pred CCCCCCCCEECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCHHHHHHC
Q ss_conf 1111333501033511152256-44337776564625565366568943548999872652683206--99954465213
Q 001858 415 IGELINLQALDFSANNLHGIIP-DSIGNLSTLNSLWLGFNNLQGNIPSSLGNCKNLMLLNVSKNKLT--GTLPPQILEIT 491 (1003)
Q Consensus 415 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ls~N~l~--~~~p~~~~~~~ 491 (1003)
+..+++|+.|++++|.+.+.++ ..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+.
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 20778888886778757543575532575461278448997542276455007543101101464422566776455578
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 322223488773336543112333334300243341222368--------534675666389933887633478000044
Q 001858 492 TLSSLLDLSSNLISGSIPLVVGNLKNLIQLDISRNRFSGEIP--------TTLSSCTSLEYLKMQDNSFRGSIPSSLISL 563 (1003)
Q Consensus 492 ~l~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 563 (1003)
.+ +.+++++|.+++..+..|..+++|+.|++++|++++..+ ..|..+++|+.|+|++|+++...+..|.++
T Consensus 481 ~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 481 NL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CC-CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCC
T ss_conf 78-99989999877679446345534688858899730000000467741423379988888899997887797773466
Q ss_pred CCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCCEEECCCCCCCCCCC
Q ss_conf 67686514675303689300037996334855899352368999-9-667875201126987568977
Q 001858 564 KSIEVLDLSCNNLSGQIPEYLEDLSFLEYLNLSYNDFEGQVPTK-G-VFSNKTRISLIENGKLCGGLD 629 (1003)
Q Consensus 564 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~-~-~~~~~~~~~~~~n~~~c~~~~ 629 (1003)
++|+.|++++|++++..+..+..+++|+.|++++|++++.++.. . .+..+..+.+.+|||.|+|..
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 67522389999777679768378988888989999687059668301146657798318970257766
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=499.19 Aligned_cols=522 Identities=21% Similarity=0.281 Sum_probs=266.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCC-------CCCCCCCCCCCCE---EEEEECCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 89976899999999836899-899-------9999999999720---148968999907999950578776357555699
Q 001858 31 LSNETDRVALLAIKSQLQDP-MGI-------TSSWNNSINVCQW---TGVTCGQRHPRVIQLYLRNQSVGGFLSPYVGNL 99 (1003)
Q Consensus 31 ~~~~~~~~al~~~k~~~~~~-~~~-------~~sW~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~g~~~~~l~~l 99 (1003)
.....|+.||.++++++.++ |.. .++|+.+++||.| +||+|+.. +||++|+|.++++.|.+|++++.|
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHHCC
T ss_conf 6677889999999997589974547767765788777998000147798487678-978899842766577288578568
Q ss_pred CCCCEEECCCCCC------CC------CCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCC
Q ss_conf 9886887478988------88------884101044467588841632332469667578-8874441124544678882
Q 001858 100 SFLRFINLASNNL------HG------EIPNELGRLSRLKVLVLDFNSFSGTIPSNLSHC-SNLINFSVRRNNLTGEIPA 166 (1003)
Q Consensus 100 ~~L~~L~L~~n~~------~~------~ip~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~ 166 (1003)
++|++|+|++|.+ .| .+|.+. +..|+ ++++.|.+.+.+|..+..+ ..+..+++....+...
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 178 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS--- 178 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC---
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC---
T ss_conf 451189876885123774334532356733888--88887-657775541170666778877776427554654101---
Q ss_pred CCCCCCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-----------------CCCCCC--CCCCCCE
Q ss_conf 00001124553882--37634655699988888764421004436799-----------------842225--7999991
Q 001858 167 YIGYYWLKLENLNV--AENQLTGQLPPSIGNISTLQQLGVGENKLYGI-----------------IPESLG--QLRDLNF 225 (1003)
Q Consensus 167 ~~~~~~~~L~~L~l--~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~ 225 (1003)
....++.+.+ ..|+++| +|..++++++|++|++++|.+++. +|+.++ ++++|++
T Consensus 179 ----~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~ 253 (636)
T 4eco_A 179 ----SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253 (636)
T ss_dssp ----CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ----CCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCE
T ss_conf ----3344213001013677750-78777256478789886882366423221222221001024863220044687888
Q ss_pred EECCCCCCCCCCCC-CCCCCCHHHHHHCCCC-CCC-CCCCCCCC-----CCCCCCEEECCCCCCCCCCCC--CCCCCCCC
Q ss_conf 76478668889998-6467843477200245-678-78832125-----863341433268523467686--65553322
Q 001858 226 LSVAENNFSGMLPP-IFNISSLEQISLLTNR-FEG-RLPLNIGF-----NLPKLKILIVGQNNLTGSIPQ--SFSNASNL 295 (1003)
Q Consensus 226 L~l~~N~l~~~~~~-~~~l~~L~~L~l~~n~-l~~-~~p~~~~~-----~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L 295 (1003)
|++++|.+.+.+|. +.++++|+.|++++|+ +.+ .+|..++. .+++|++|++++|+++ .+|. .+.++++|
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred EEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCC
T ss_conf 98048857762838883499978897847988766533578875430465788888989799377-66765554257888
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10112386245755766677784447854788899999887145752127777747524676789988500003562020
Q 001858 296 VILNLSGNHFSGKVGIDFSSLPNITRLNLGQNNLGSGSIGDLDFITLLTNCSKLETLGLNSNRFGGSLPRSIANLSTITI 375 (1003)
Q Consensus 296 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 375 (1003)
++|++++|.+++. +| .+..+++|+.
T Consensus 333 ~~L~L~~N~l~g~------------------------------------------------------ip-~~~~l~~L~~ 357 (636)
T 4eco_A 333 GMLECLYNQLEGK------------------------------------------------------LP-AFGSEIKLAS 357 (636)
T ss_dssp CEEECCSCCCEEE------------------------------------------------------CC-CCEEEEEESE
T ss_pred CEEECCCCCCCCC------------------------------------------------------HH-HHCCCCCCCE
T ss_conf 9896908807051------------------------------------------------------66-6478898898
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCCEECCCCCCCCCCCCCCCC-------CCCCC
Q ss_conf 115464455763100258787-34898136542112787511113--335010335111522564433-------77765
Q 001858 376 IAMGLNQISGTIPLEIRNLAN-IYALGLEYNQLTGTIPYTIGELI--NLQALDFSANNLHGIIPDSIG-------NLSTL 445 (1003)
Q Consensus 376 L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L 445 (1003)
|++++|++. .+|..+..+++ |+.|++++|.++ .+|..+.... +|+.|++++|.+.+..|..+. .+++|
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 989899403-033756510236868985298275-446655333457668897748857886524420022011258988
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCC-------CCCCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 64625565366568943548999872652683206999544652133-------222234887733365431123--333
Q 001858 446 NSLWLGFNNLQGNIPSSLGNCKNLMLLNVSKNKLTGTLPPQILEITT-------LSSLLDLSSNLISGSIPLVVG--NLK 516 (1003)
Q Consensus 446 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~-------l~~~l~L~~n~l~~~~~~~~~--~l~ 516 (1003)
+.|++++|.++...+..+..+++|+.|++++|+++ .+|...+.... .++.+++++|.++ .+|..+. .++
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 513 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP 513 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCC
T ss_conf 88977279668678788715898898989799788-7397884044001221477338989699388-168545344588
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE------CCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCC
Q ss_conf 3430024334122236853467566638993------3887633478000044676865146753036893000379963
Q 001858 517 NLIQLDISRNRFSGEIPTTLSSCTSLEYLKM------QDNSFRGSIPSSLISLKSIEVLDLSCNNLSGQIPEYLEDLSFL 590 (1003)
Q Consensus 517 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 590 (1003)
+|+.|++++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|++++|+++ .+|..+. ++|
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 589 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNI 589 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTC
T ss_pred CCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHH--CCC
T ss_conf 76989898998877-6823530888787889888665667312127377856998788989899477-0597683--867
Q ss_pred CEEECCCCCCCCCCCCCC---CCCCCCCEEECCCCCCCCCC
Q ss_conf 348558993523689999---66787520112698756897
Q 001858 591 EYLNLSYNDFEGQVPTKG---VFSNKTRISLIENGKLCGGL 628 (1003)
Q Consensus 591 ~~L~l~~N~l~~~~~~~~---~~~~~~~~~~~~n~~~c~~~ 628 (1003)
+.|++++|++.+...... .......+.+......++|+
T Consensus 590 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred CEEECCCCCCCCCCHHHCCHHHHCCCCEEECCCCCCCCCCC
T ss_conf 89987699876336786201122661003437754347986
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=491.30 Aligned_cols=478 Identities=20% Similarity=0.243 Sum_probs=254.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC--CCE------------EEEEECCCCCCEEEEEEECCCCCC
Q ss_conf 68997689999999983689989999999999-----99--720------------148968999907999950578776
Q 001858 30 ALSNETDRVALLAIKSQLQDPMGITSSWNNSI-----NV--CQW------------TGVTCGQRHPRVIQLYLRNQSVGG 90 (1003)
Q Consensus 30 ~~~~~~~~~al~~~k~~~~~~~~~~~sW~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~g 90 (1003)
+.+..+|++||++||+++.|| +|+.+. +| |.| .||+|+. ++||+.|+|.++++.|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCCC
T ss_conf 546317899999999973799-----9886898653367764034666545335768428369-9979899872478999
Q ss_pred CCCCCCCCCCCCCEEEC-CCCCCCCCCCHHHCCC----------------------------------------------
Q ss_conf 35755569998868874-7898888884101044----------------------------------------------
Q 001858 91 FLSPYVGNLSFLRFINL-ASNNLHGEIPNELGRL---------------------------------------------- 123 (1003)
Q Consensus 91 ~~~~~l~~l~~L~~L~L-~~n~~~~~ip~~~~~l---------------------------------------------- 123 (1003)
.+|++++.|++|++|+| ++|.+.|..|-.....
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred CCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 48557741555628430125633566642223445441156788877766665420375111567878776507332432
Q ss_pred -----CCCCEEEEC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-
Q ss_conf -----467588841--632332469667578887444112454467-88820000112455388237634655699988-
Q 001858 124 -----SRLKVLVLD--FNSFSGTIPSNLSHCSNLINFSVRRNNLTG-EIPAYIGYYWLKLENLNVAENQLTGQLPPSIG- 194 (1003)
Q Consensus 124 -----~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~- 194 (1003)
..++.+.++ .|.+++ +|..++++++|+.|+|++|.+++ .+|... +..+.|.++|.+|+.++
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---------EDANSDYAKQYENEELSW 487 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---------SCTTSHHHHHHTTSCCCG
T ss_pred CCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCC---------CCCCCCCCCCCCCHHHHH
T ss_conf 2235442312040566676152-118875699987897968867887465322---------332222224458744402
Q ss_pred -CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCC-CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf -88876442100443679984222579999917647866-888-9998-6467843477200245678788321258633
Q 001858 195 -NISTLQQLGVGENKLYGIIPESLGQLRDLNFLSVAENN-FSG-MLPP-IFNISSLEQISLLTNRFEGRLPLNIGFNLPK 270 (1003)
Q Consensus 195 -~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~N~-l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 270 (1003)
++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|. +..++ . .+..+++
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------------~-~~~~l~~ 549 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------------D-DEDTGPK 549 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------H-CTTTTTT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHH-----------------H-CCCCCCC
T ss_conf 559997789871898875273877379998999896898765664617787523-----------------3-0155688
Q ss_pred CCEEECCCCCCCCCCCC--CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 41433268523467686--6555332210112386245755766677784447854788899999887145752127777
Q 001858 271 LKILIVGQNNLTGSIPQ--SFSNASNLVILNLSGNHFSGKVGIDFSSLPNITRLNLGQNNLGSGSIGDLDFITLLTNCSK 348 (1003)
Q Consensus 271 L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~ 348 (1003)
|+.|++++|+++ .+|. .+.++++|+.|+|++|.++ ..| .|..+++|+.|++++|.+..++. .+..+++
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~-------~l~~l~~ 619 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE-------DFCAFTD 619 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCT-------TSCEECT
T ss_pred CCEEEEECCCCC-CCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCCCCHH-------HHHHCCC
T ss_conf 319982289477-6187235515898898989799825-621-22479850079871871250358-------7752511
Q ss_pred -CCEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCE
Q ss_conf -747524676789988500003562--02011546445576310025878734898136542112787511--1133350
Q 001858 349 -LETLGLNSNRFGGSLPRSIANLST--ITIIAMGLNQISGTIPLEIRNLANIYALGLEYNQLTGTIPYTIG--ELINLQA 423 (1003)
Q Consensus 349 -L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~ 423 (1003)
|+.|++++|.+. .+|..+..+.. |+.|++++|++.+..|... ..+. ..++|+.
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---------------------~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS---------------------CSMDDYKGINAST 677 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS---------------------SCTTTCCCCCEEE
T ss_pred CCCEEECCCCCCC-CCCHHHHCCCCCCCCEEECCCCCCCCCCCCCH---------------------HHHCCCCCCCCCE
T ss_conf 4989998499787-47644522556777889770884788643200---------------------0000135797688
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--------CCCCCEEECCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 103351115225644337776564625565366568943548--------999872652683206999544652133222
Q 001858 424 LDFSANNLHGIIPDSIGNLSTLNSLWLGFNNLQGNIPSSLGN--------CKNLMLLNVSKNKLTGTLPPQILEITTLSS 495 (1003)
Q Consensus 424 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~--------l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~ 495 (1003)
|++++|.+....+..+..+++|+.|+|++|.++ .+|..+.. +++|+.|++++|+++ .+|..
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~--------- 746 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD--------- 746 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG---------
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHH---------
T ss_conf 983199688659788713898899989899688-5496784555334321487158988899786-65277---------
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC------CCCCCCCCCCCCCCCCCC
Q ss_conf 234887733365431123--333343002433412223685346756663899338------876334780000446768
Q 001858 496 LLDLSSNLISGSIPLVVG--NLKNLIQLDISRNRFSGEIPTTLSSCTSLEYLKMQD------NSFRGSIPSSLISLKSIE 567 (1003)
Q Consensus 496 ~l~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~l~~L~ 567 (1003)
+. .+++|+.|++++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+
T Consensus 747 ----------------l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 747 ----------------FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp ----------------GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred ----------------HHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf ----------------624427986989908997876-105661599988998879977665632444868883699878
Q ss_pred EEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 6514675303689300037996334855899352368
Q 001858 568 VLDLSCNNLSGQIPEYLEDLSFLEYLNLSYNDFEGQV 604 (1003)
Q Consensus 568 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 604 (1003)
.|+|++|++ +.+|..+. ++|+.|++++|++....
T Consensus 810 ~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp EEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred EEECCCCCC-CCCCHHHC--CCCCEEECCCCCCCCCC
T ss_conf 898879978-74087662--87788999799888117
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=484.13 Aligned_cols=549 Identities=20% Similarity=0.216 Sum_probs=444.8
Q ss_pred CCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 72014896899990799995057877635755569998868874789888888-41010444675888416323324696
Q 001858 64 CQWTGVTCGQRHPRVIQLYLRNQSVGGFLSPYVGNLSFLRFINLASNNLHGEI-PNELGRLSRLKVLVLDFNSFSGTIPS 142 (1003)
Q Consensus 64 c~w~gv~c~~~~~~v~~l~l~~~~~~g~~~~~l~~l~~L~~L~L~~n~~~~~i-p~~~~~l~~L~~L~L~~n~l~~~~p~ 142 (1003)
|.|..|-+ ...+++.|+|.++.+++..+..+..+++|++|+|++|...+.+ |..|+++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 99777898--9998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 6757888744411245446788820--00011245538823763465569-99888887644210044367998422257
Q 001858 143 NLSHCSNLINFSVRRNNLTGEIPAY--IGYYWLKLENLNVAENQLTGQLP-PSIGNISTLQQLGVGENKLYGIIPESLGQ 219 (1003)
Q Consensus 143 ~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 219 (1003)
.++.+++|++|+|++|.+++.+|.. ++. +++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRN-LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSS-CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCC
T ss_conf 715786658701767889734046764556-6799988898786423256655763889898989898477667887535
Q ss_pred C--CCCCEEECCCCCCCCCCCC-CCCCC------CHHHHHHCCCCCCCCCCCCCCCC--CCCCCEEECCC---------C
Q ss_conf 9--9999176478668889998-64678------43477200245678788321258--63341433268---------5
Q 001858 220 L--RDLNFLSVAENNFSGMLPP-IFNIS------SLEQISLLTNRFEGRLPLNIGFN--LPKLKILIVGQ---------N 279 (1003)
Q Consensus 220 l--~~L~~L~l~~N~l~~~~~~-~~~l~------~L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~L~~---------N 279 (1003)
+ ++|+.|+++.|.+.+..+. +..+. +|+.|+++.|.+.+.+|..+... ..+++.+.+.. +
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 56775035789788666554553322377223574007965788686567788876427441001121212234664445
Q ss_pred CCCCCCCCCCCCC--CCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCC
Q ss_conf 2346768665553--32210112386245755766677784447854788899999887145752127777747524676
Q 001858 280 NLTGSIPQSFSNA--SNLVILNLSGNHFSGKVGIDFSSLPNITRLNLGQNNLGSGSIGDLDFITLLTNCSKLETLGLNSN 357 (1003)
Q Consensus 280 ~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N 357 (1003)
.+.+.....|..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+...... .+..+++|++|++++|
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE------AFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT------TTTTCSSCCEEEEESC
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH------HHCCCCCCCEEECCCC
T ss_conf 6688985565255547861898979945515863452589999998979818987968------8368889998989899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 78998850000356202011546445576310025878734898136542112787511113335010335111522564
Q 001858 358 RFGGSLPRSIANLSTITIIAMGLNQISGTIPLEIRNLANIYALGLEYNQLTGTIPYTIGELINLQALDFSANNLHGIIPD 437 (1003)
Q Consensus 358 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 437 (1003)
.+.+..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+++ ++ .+++|+.|++++|++.. +|.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~-l~~ 398 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVT-LPK 398 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCC-CCC
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CC----CCCCCCHHCCCCCCCCC-CCC
T ss_conf 7885187884689999989898998776286661378889998898997786-16----88982320058997231-455
Q ss_pred CCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC-----CCCCCC
Q ss_conf 4337776564625565366568-9435489998726526832069995446521332222348877333-----654311
Q 001858 438 SIGNLSTLNSLWLGFNNLQGNI-PSSLGNCKNLMLLNVSKNKLTGTLPPQILEITTLSSLLDLSSNLIS-----GSIPLV 511 (1003)
Q Consensus 438 ~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~l~L~~n~l~-----~~~~~~ 511 (1003)
. ..+++.+++++|++++.. +..+..+++|+.|++++|++++..+.........++.+++++|.++ +..+..
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred C---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 4---5543122145675345755666512776666667787125555433356687310024777736441013553555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCC
Q ss_conf 23333343002433412223685346756663899338876334780000446768651467530368930003799633
Q 001858 512 VGNLKNLIQLDISRNRFSGEIPTTLSSCTSLEYLKMQDNSFRGSIPSSLISLKSIEVLDLSCNNLSGQIPEYLEDLSFLE 591 (1003)
Q Consensus 512 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 591 (1003)
|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++..|..+. +|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCC
T ss_conf 44755365777889856553955704501221569999978745710110--0455888988847888966837---768
Q ss_pred EEECCCCCCCCCCCCCCCCCCC--CCEEECCC--CCCCCCCCCCCCCC
Q ss_conf 4855899352368999966787--52011269--87568977778997
Q 001858 592 YLNLSYNDFEGQVPTKGVFSNK--TRISLIEN--GKLCGGLDELHLPA 635 (1003)
Q Consensus 592 ~L~l~~N~l~~~~~~~~~~~~~--~~~~~~~n--~~~c~~~~~l~~~~ 635 (1003)
.+++++|++.|.++........ ....+.+. ...|..|..+....
T Consensus 551 ~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~ 598 (844)
T 3j0a_A 551 VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVS 598 (844)
T ss_dssp EEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCC
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 899319970253661899999973685302660027557806657972
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=483.35 Aligned_cols=557 Identities=19% Similarity=0.180 Sum_probs=432.9
Q ss_pred EEEEEECCC---------CCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCCCC
Q ss_conf 014896899---------99079999505787763575556999886887478988888841010444675888416323
Q 001858 66 WTGVTCGQR---------HPRVIQLYLRNQSVGGFLSPYVGNLSFLRFINLASNNLHGEIPNELGRLSRLKVLVLDFNSF 136 (1003)
Q Consensus 66 w~gv~c~~~---------~~~v~~l~l~~~~~~g~~~~~l~~l~~L~~L~L~~n~~~~~ip~~~~~l~~L~~L~L~~n~l 136 (1003)
+..|.|... ...++.|+|.++.+++..+..++++++|++|+|++|++.+..|..|+.+++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 72377777980628677898675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 32469667578887444112454467888200001124553882376346556999888887644210044367998422
Q 001858 137 SGTIPSNLSHCSNLINFSVRRNNLTGEIPAYIGYYWLKLENLNVAENQLTGQLPPSIGNISTLQQLGVGENKLYGIIPES 216 (1003)
Q Consensus 137 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 216 (1003)
++..|..++.+++|++|++++|.+++..|..++. +++|++|++++|++++..++.+..+++|++|++++|.+++..|..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT-CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 5458655234421537652126766578101223-782238988798341147654568765687776568445549656
Q ss_pred CCCCCCCC--EEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----CCCCCCC
Q ss_conf 25799999--1764786688899986467843477200245678788321258633414332685234-----6768665
Q 001858 217 LGQLRDLN--FLSVAENNFSGMLPPIFNISSLEQISLLTNRFEGRLPLNIGFNLPKLKILIVGQNNLT-----GSIPQSF 289 (1003)
Q Consensus 217 l~~l~~L~--~L~l~~N~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~-----~~~p~~l 289 (1003)
++.+++|+ .|++++|.+.+.++..+...+|+.|+++.|... +..+. .+..++...+..+.+. ...+..+
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL---LVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH---HHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHH---HHHHH-HCCCCCHHHEECHHHCCCCCCCCCHHHH
T ss_conf 3322156403896679814754866730010013556772667---77765-1335644220020110264122686674
Q ss_pred CCCC--CCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 5533--22101123862457557666777844478547888999998871457521277777475246767899885000
Q 001858 290 SNAS--NLVILNLSGNHFSGKVGIDFSSLPNITRLNLGQNNLGSGSIGDLDFITLLTNCSKLETLGLNSNRFGGSLPRSI 367 (1003)
Q Consensus 290 ~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 367 (1003)
..+. +|+.|++++|.+++..+..|..+++|++|++++|.++.++. .+..+++|++|++++|.+....+..+
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred CHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH-------HHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 30320750599944576585577774456678889562882677782-------14165468889771687686760233
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 035620201154644557631-00258787348981365421127--875111133350103351115225644337776
Q 001858 368 ANLSTITIIAMGLNQISGTIP-LEIRNLANIYALGLEYNQLTGTI--PYTIGELINLQALDFSANNLHGIIPDSIGNLST 444 (1003)
Q Consensus 368 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 444 (1003)
..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 01576898889899744434624550667589887889966645675221056788898989899677578887347745
Q ss_pred CCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 56462556536656894-3548999872652683206999544652133222234887733365---4311233333430
Q 001858 445 LNSLWLGFNNLQGNIPS-SLGNCKNLMLLNVSKNKLTGTLPPQILEITTLSSLLDLSSNLISGS---IPLVVGNLKNLIQ 520 (1003)
Q Consensus 445 L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~l~L~~n~l~~~---~~~~~~~l~~L~~ 520 (1003)
|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..|..+..++.+ +.+++++|.+++. .+..+..+++|+.
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCC-CEEECCCCCCCCCCCCCCHHHCCCCCCCE
T ss_conf 77687888867775652124176558889898985577687787378878-88989899888543454312404887668
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 02433412223685346756663899338876334780000446768651467530368930003799633485589935
Q 001858 521 LDISRNRFSGEIPTTLSSCTSLEYLKMQDNSFRGSIPSSLISLKSIEVLDLSCNNLSGQIPEYLEDLSFLEYLNLSYNDF 600 (1003)
Q Consensus 521 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 600 (1003)
|++++|.+++..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++.+|..+..+++|+.+++++|++
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCC
T ss_conf 8799996670686463265678889898980686896684756651-898768941426876625677878896779986
Q ss_pred CCCCCCCCCCCCCC----CEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 23689999667875----20112698756897777899778
Q 001858 601 EGQVPTKGVFSNKT----RISLIENGKLCGGLDELHLPACH 637 (1003)
Q Consensus 601 ~~~~~~~~~~~~~~----~~~~~~n~~~c~~~~~l~~~~~~ 637 (1003)
.|.++..+...+.. .+. ......|..|..+.+....
T Consensus 560 ~c~c~~~~~~~w~~~~~~~~~-~~~~~~C~~p~~~~g~~l~ 599 (606)
T 3t6q_A 560 DCTCSNIYFLEWYKENMQKLE-DTEDTLCENPPLLRGVRLS 599 (606)
T ss_dssp ECSGGGHHHHHHHHHCGGGEE-CGGGCBEEESGGGTTCBGG
T ss_pred CCCCCCHHHHHHHHHCCCCCC-CCCCCEECCCHHHCCCEEE
T ss_conf 166775789999973755336-7788736972686897556
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=479.21 Aligned_cols=529 Identities=21% Similarity=0.229 Sum_probs=254.0
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99950578776357555699988688747898888884101044467588841632332469667578887444112454
Q 001858 80 QLYLRNQSVGGFLSPYVGNLSFLRFINLASNNLHGEIPNELGRLSRLKVLVLDFNSFSGTIPSNLSHCSNLINFSVRRNN 159 (1003)
Q Consensus 80 ~l~l~~~~~~g~~~~~l~~l~~L~~L~L~~n~~~~~ip~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 159 (1003)
.+++.+.+++. +|..+. +.+++|+|++|++.+..|..++++++|++|+|++|.+++..|..++.+++|++|++++|.
T Consensus 8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-CCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 44877798052-641248--887688898997787597887178767588788996485697787406676888899985
Q ss_pred CCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 46788820-00011245538823763465569998888876442100443679984222579999917647866888999
Q 001858 160 LTGEIPAY-IGYYWLKLENLNVAENQLTGQLPPSIGNISTLQQLGVGENKLYGIIPESLGQLRDLNFLSVAENNFSGMLP 238 (1003)
Q Consensus 160 l~~~~p~~-~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 238 (1003)
++ .+|.. ++. +++|++|++++|++++..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+
T Consensus 85 l~-~l~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 85 LS-QLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CC-CCCTTTTTT-CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CC-CCCHHHHCC-CCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 67-568545303-8888989898996685396674156788889898995246672111245567779745884365297
Q ss_pred C---CCCCCCHHHHHHCCCCCCCCCCCCCCCCC---------------------------CCCCEEECCCCCCCCCCCCC
Q ss_conf 8---64678434772002456787883212586---------------------------33414332685234676866
Q 001858 239 P---IFNISSLEQISLLTNRFEGRLPLNIGFNL---------------------------PKLKILIVGQNNLTGSIPQS 288 (1003)
Q Consensus 239 ~---~~~l~~L~~L~l~~n~l~~~~p~~~~~~l---------------------------~~L~~L~L~~N~l~~~~p~~ 288 (1003)
. ...+++|+.|+++.|++.+..|..+. .+ ++|+.|++++|.+++..|..
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHH
T ss_conf 886244666321798889825655815553-2234455430566468056777877753151008874577436468667
Q ss_pred CCCCCC--CHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCC-----
Q ss_conf 555332--2101123862457557666777844478547888999998871457521277777475246767899-----
Q 001858 289 FSNASN--LVILNLSGNHFSGKVGIDFSSLPNITRLNLGQNNLGSGSIGDLDFITLLTNCSKLETLGLNSNRFGG----- 361 (1003)
Q Consensus 289 l~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~----- 361 (1003)
+..++. |+.|++++|.+++..+..|..+++|++|++++|.+...... .+..+++|+.|++++|...+
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH------SLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT------TTTTCTTCCEEECTTCBCCC-----
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH------HHCCCCCCCEEECCCHHHHCCCCCC
T ss_conf 5146767788877878876756802116741056855778856765865------6267888557736331321333335
Q ss_pred CCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CCCCCCCCC--CCCCEECCCCCCCCC
Q ss_conf 8850----00035620201154644557631002587873489813654211--278751111--333501033511152
Q 001858 362 SLPR----SIANLSTITIIAMGLNQISGTIPLEIRNLANIYALGLEYNQLTG--TIPYTIGEL--INLQALDFSANNLHG 433 (1003)
Q Consensus 362 ~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l--~~L~~L~Ls~N~l~~ 433 (1003)
.+|. .|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.. .....|..+ ++|+.|++++|.+.+
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~ 395 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCE
T ss_conf 54543865624677788887989826878855740656872898879801443235322024556867668899997776
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC--CCCCC
Q ss_conf 256443377765646255653665689-435489998726526832069995446521332222348877333--65431
Q 001858 434 IIPDSIGNLSTLNSLWLGFNNLQGNIP-SSLGNCKNLMLLNVSKNKLTGTLPPQILEITTLSSLLDLSSNLIS--GSIPL 510 (1003)
Q Consensus 434 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~l~L~~n~l~--~~~~~ 510 (1003)
..|..|..+++|+.|++++|.+.+.++ ..+.++++|++|++++|++++..+..+...+ .++.+++++|.++ +..|.
T Consensus 396 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT-TCCEEECTTSCCBCTTCSSC
T ss_pred ECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCC-CCCCCHHCCCCCCCCCCCCC
T ss_conf 77544207788888867787575435755325754612784489975422764550075-43101101464422566776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--------CCCCCCCCCCEEECCCCEECCCCCC
Q ss_conf 12333334300243341222368534675666389933887633478--------0000446768651467530368930
Q 001858 511 VVGNLKNLIQLDISRNRFSGEIPTTLSSCTSLEYLKMQDNSFRGSIP--------SSLISLKSIEVLDLSCNNLSGQIPE 582 (1003)
Q Consensus 511 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~ 582 (1003)
.+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+ ..+.++++|+.|++++|+++...+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 45557878999899998776794463455346888588997300000004677414233799888888999978877977
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCC
Q ss_conf 0037996334855899352368999-96678752011269
Q 001858 583 YLEDLSFLEYLNLSYNDFEGQVPTK-GVFSNKTRISLIEN 621 (1003)
Q Consensus 583 ~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~n 621 (1003)
.+..+++|+.|++++|++++.++.. .....+..+.+.+|
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 7346667522389999777679768378988888989999
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=473.56 Aligned_cols=529 Identities=20% Similarity=0.234 Sum_probs=325.3
Q ss_pred CCCCCCEE----EEEECCC---------CCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCC
Q ss_conf 99997201----4896899---------9907999950578776357555699988688747898888884101044467
Q 001858 60 SINVCQWT----GVTCGQR---------HPRVIQLYLRNQSVGGFLSPYVGNLSFLRFINLASNNLHGEIPNELGRLSRL 126 (1003)
Q Consensus 60 ~~~~c~w~----gv~c~~~---------~~~v~~l~l~~~~~~g~~~~~l~~l~~L~~L~L~~n~~~~~ip~~~~~l~~L 126 (1003)
+.++|.|. .|.|... ..+++.|+|.++.+.+..+..+.++++|++|+|++|++.+..|..|+.+++|
T Consensus 3 ~~~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 3 SLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp ---CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHC
T ss_conf 77775321789705746888451898888876788788897577375455577667488688773664397773060106
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEEE
Q ss_conf 5888416323324696675788874441124544678882000011245538823763465-569998888876442100
Q 001858 127 KVLVLDFNSFSGTIPSNLSHCSNLINFSVRRNNLTGEIPAYIGYYWLKLENLNVAENQLTG-QLPPSIGNISTLQQLGVG 205 (1003)
Q Consensus 127 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~ 205 (1003)
++|+|++|.+++..|..++.+++|++|++++|.+++..+..++. +.+|++|++++|.+++ .+|..++++++|++|+++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECC
T ss_conf 88678798563048522078653788870377555445113489-88779896878852325306867326777788766
Q ss_pred CCCCCCCCCCCCCCCCCCC----EEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCCCCCCEEECCCCC
Q ss_conf 4436799842225799999----17647866888999864678434772002456787-883212586334143326852
Q 001858 206 ENKLYGIIPESLGQLRDLN----FLSVAENNFSGMLPPIFNISSLEQISLLTNRFEGR-LPLNIGFNLPKLKILIVGQNN 280 (1003)
Q Consensus 206 ~n~l~~~~p~~l~~l~~L~----~L~l~~N~l~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~L~~N~ 280 (1003)
+|.+++..|..++.+++|+ +|++++|.+++..+..+...+|+.|+++.|.+.+. +|..+ .+++.++.+.+..+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL-QNLAGLHVHRLILGE 240 (606)
T ss_dssp SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHH-HTTTTCEEEEEEEEC
T ss_pred CCCCEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHH-CCCCCCCCCCCCCCC
T ss_conf 8853105733412120342002430046897532571105676043352467856166778886-026656523141111
Q ss_pred CCCC------CCCCCCCCC--CCHHHHC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCE
Q ss_conf 3467------686655533--2210112-386245755766677784447854788899999887145752127777747
Q 001858 281 LTGS------IPQSFSNAS--NLVILNL-SGNHFSGKVGIDFSSLPNITRLNLGQNNLGSGSIGDLDFITLLTNCSKLET 351 (1003)
Q Consensus 281 l~~~------~p~~l~~l~--~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~ 351 (1003)
+.+. .+..+..+. .++.+++ ..|.+.+..+. +..+++|+.|++++|.+..++ .+..+++|+.
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~ 311 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQS 311 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSE
T ss_pred CCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHHHH--------HCCCCCCCCE
T ss_conf 0367741026817766665434745012366555543222-354887898771476604435--------4334011778
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEECCCCC
Q ss_conf 52467678998850000356202011546445576310025878734898136542112--7875111133350103351
Q 001858 352 LGLNSNRFGGSLPRSIANLSTITIIAMGLNQISGTIPLEIRNLANIYALGLEYNQLTGT--IPYTIGELINLQALDFSAN 429 (1003)
Q Consensus 352 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N 429 (1003)
|++++|.++ .+| .+ .+++|+.|++++|...... .+..+++|+.|++++|.+++. .+..+..+++|+.|++++|
T Consensus 312 L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 312 LSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp EEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred EECCCCCCC-CCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCC
T ss_conf 976466676-546-67-8875564454478685310--002489888797758736877520122146775548678899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-C
Q ss_conf 1152256443377765646255653665689-4354899987265268320699954465213322223488773336-5
Q 001858 430 NLHGIIPDSIGNLSTLNSLWLGFNNLQGNIP-SSLGNCKNLMLLNVSKNKLTGTLPPQILEITTLSSLLDLSSNLISG-S 507 (1003)
Q Consensus 430 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~l~L~~n~l~~-~ 507 (1003)
.+.+ .|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++++..|..+..+..+ +.+++++|.+++ .
T Consensus 387 ~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNT 464 (606)
T ss_dssp SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGE
T ss_pred CCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCC-CEEECCCCCCCCCC
T ss_conf 5300-055406888889658988705875376456462137889896897874335553477878-98989898379854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCC
Q ss_conf 43112333334300243341222368534675666389933887633478000044676865146753036893000379
Q 001858 508 IPLVVGNLKNLIQLDISRNRFSGEIPTTLSSCTSLEYLKMQDNSFRGSIPSSLISLKSIEVLDLSCNNLSGQIPEYLEDL 587 (1003)
Q Consensus 508 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 587 (1003)
.|..++.+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|..+..+
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHH
T ss_conf 6776045788998989888577648656154646898989899578748777068876898889898376-668767521
Q ss_pred C-CCCEEECCCCCCCCCCCCC
Q ss_conf 9-6334855899352368999
Q 001858 588 S-FLEYLNLSYNDFEGQVPTK 607 (1003)
Q Consensus 588 ~-~L~~L~l~~N~l~~~~~~~ 607 (1003)
+ +|+++++++|++.|.++..
T Consensus 544 ~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCCEEECCCCCCCCCCCCH
T ss_conf 021748876289866477648
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=472.93 Aligned_cols=524 Identities=20% Similarity=0.214 Sum_probs=438.8
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 995057877635755569998868874789888888410104446758884163233246-9667578887444112454
Q 001858 81 LYLRNQSVGGFLSPYVGNLSFLRFINLASNNLHGEIPNELGRLSRLKVLVLDFNSFSGTI-PSNLSHCSNLINFSVRRNN 159 (1003)
Q Consensus 81 l~l~~~~~~g~~~~~l~~l~~L~~L~L~~n~~~~~ip~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~ 159 (1003)
.+..+++++. +|. ..+.|++|||++|.+++..|..++.+++|++|+|++|.+.+.+ |..++++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EECCCCCCCC-CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 9823799777-898---999868888877867832966776621370886789977444197785378778888798995
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC
Q ss_conf 467888200001124553882376346556999--8888876442100443679984-2225799999176478668889
Q 001858 160 LTGEIPAYIGYYWLKLENLNVAENQLTGQLPPS--IGNISTLQQLGVGENKLYGIIP-ESLGQLRDLNFLSVAENNFSGM 236 (1003)
Q Consensus 160 l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~ 236 (1003)
+.+..|..++.+ ++|++|+|++|.+++.+|.. ++++++|++|++++|.+.+..+ ..++++++|++|++++|.+++.
T Consensus 85 l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CCCCCHHHCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEE
T ss_conf 853197671578-6658701767889734046764556679998889878642325665576388989898989847766
Q ss_pred CCC-CCCC--CCHHHHHHCCCCCCCCCCCCCCCCCC------CCCEEECCCCCCCCCCCCCCCCC---CCCHHHHCC---
Q ss_conf 998-6467--84347720024567878832125863------34143326852346768665553---322101123---
Q 001858 237 LPP-IFNI--SSLEQISLLTNRFEGRLPLNIGFNLP------KLKILIVGQNNLTGSIPQSFSNA---SNLVILNLS--- 301 (1003)
Q Consensus 237 ~~~-~~~l--~~L~~L~l~~n~l~~~~p~~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls--- 301 (1003)
.+. +..+ ++|+.|+++.|.+.+..|..++ .++ .|+.|++++|.+++..+..+... .+++.+.++
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHCCCCCCCCCCEEECCCCCCCCCCCCCHH-HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCC
T ss_conf 78875355677503578978866655455332-23772235740079657886865677888764274410011212122
Q ss_pred ------CCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf ------862457557666777--844478547888999998871457521277777475246767899885000035620
Q 001858 302 ------GNHFSGKVGIDFSSL--PNITRLNLGQNNLGSGSIGDLDFITLLTNCSKLETLGLNSNRFGGSLPRSIANLSTI 373 (1003)
Q Consensus 302 ------~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 373 (1003)
.+.+.......|.++ ++|+.|++++|.+...... .+..+++|+.|++++|.+.+..+..|..+++|
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------VFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------CSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHH------HHHCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 346644456688985565255547861898979945515863------45258999999897981898796883688899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 20115464455763100258787348981365421127875111133350103351115225644337776564625565
Q 001858 374 TIIAMGLNQISGTIPLEIRNLANIYALGLEYNQLTGTIPYTIGELINLQALDFSANNLHGIIPDSIGNLSTLNSLWLGFN 453 (1003)
Q Consensus 374 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 453 (1003)
+.|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+++. + .+++|+.|++++|
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N 391 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGN 391 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESC
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-C----CCCCCCHHCCCCC
T ss_conf 9898989978851878846899999898989987762866613788899988989977861-6----8898232005899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC---
Q ss_conf 366568943548999872652683206999544652133222234887733365431-1233333430024334122---
Q 001858 454 NLQGNIPSSLGNCKNLMLLNVSKNKLTGTLPPQILEITTLSSLLDLSSNLISGSIPL-VVGNLKNLIQLDISRNRFS--- 529 (1003)
Q Consensus 454 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~l~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~--- 529 (1003)
+++ .+|.. ..+++.|++++|++++.-......-.+.++.+++++|.+++..+. .+..+++|+.|++++|.++
T Consensus 392 ~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 392 KLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp CCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred CCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 723-14554---55431221456753457556665127766666677871255554333566873100247777364410
Q ss_pred --CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf --236853467566638993388763347800004467686514675303689300037996334855899352368999
Q 001858 530 --GEIPTTLSSCTSLEYLKMQDNSFRGSIPSSLISLKSIEVLDLSCNNLSGQIPEYLEDLSFLEYLNLSYNDFEGQVPTK 607 (1003)
Q Consensus 530 --~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 607 (1003)
+..+..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|+|++..+..+. ++|+.|++++|++++.+|.
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~- 544 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD- 544 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC-
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHH-
T ss_conf 1355355544755365777889856553955704501221569999978745710110--0455888988847888966-
Q ss_pred CCCCCCCCEEECCCCCCCCCCC
Q ss_conf 9667875201126987568977
Q 001858 608 GVFSNKTRISLIENGKLCGGLD 629 (1003)
Q Consensus 608 ~~~~~~~~~~~~~n~~~c~~~~ 629 (1003)
.+..+..+.+.+||+.|+|..
T Consensus 545 -~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 545 -VFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp -CCSSCCEEEEEEECCCCSSSC
T ss_pred -HHCCCCEEEECCCCCCCCCCC
T ss_conf -837768899319970253661
Done!