BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001859
(1003 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 594 bits (1531), Expect = e-170, Method: Compositional matrix adjust.
Identities = 354/976 (36%), Positives = 539/976 (55%), Gaps = 84/976 (8%)
Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65
+++A LLA+L E+ S+K +AL ++N+ VDQ W EIS +P IE+LY+D+ F R++
Sbjct: 3 LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTF--SDREM 60
Query: 66 AALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESN 125
AAL+ SKV+Y LGE ++ YAL A FD+ E S +V T+++K+I+ Y SK +
Sbjct: 61 AALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKD 120
Query: 126 DEAAN---VDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAI-------TRS 175
++ +DP+L +I ERM++KC+ + + A+GIA+E RLD +E A+ + S
Sbjct: 121 EQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTS 180
Query: 176 DNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVV 235
+NV ++Y + ++ + V +P+ DYL++ + ++ L++ G+
Sbjct: 181 ENVK-IINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDA-GLA 238
Query: 236 SILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPP 295
L K L+ EN D L+ QIAFDLV + Q L
Sbjct: 239 LQLFKKLKEEN--DEGLSAQIAFDLVSSASQQLL-------------------------- 270
Query: 296 SAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLY 355
++ + E T Q DP + ILSG + FL
Sbjct: 271 ----------EILVTELT------AQGYDPA----------LLNILSGLPTCDYYNTFLL 304
Query: 356 SHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAK 415
++ D+ +L K S++ + S+ H+A AN MHAGTT ++F++ NL WL +A NWAK
Sbjct: 305 NNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAK 364
Query: 416 FSATAGLGVIHRGHLQQGRSLMAPXXXXXXXXXXXXXXXXXXXXYALGLIHANHGEGIKQ 475
F+ATA LGVIH+G+L +G+ +MAP Y LGLI+A G
Sbjct: 365 FTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSL---YGLGLIYAGFGRDTTD 421
Query: 476 FLRDSLRST-------NVEVIQHXXXXXXXXXXXXXXDEDIYDDIKNVLYTDSAVAGEAA 528
+L++ + +V+V+ H + ++Y+ +K VLY DSA +GEAA
Sbjct: 422 YLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAA 481
Query: 529 GISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR 587
+ MGL M+GT +A +M TY+ ETQH I RGLA+G+AL YGR+E AD LI +M
Sbjct: 482 ALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA 541
Query: 588 DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ 647
+ +LRYGG + +ALAY+GT NN A+++LLH AVSD +DDVRR AV+ALGFVL +
Sbjct: 542 SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 601
Query: 648 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMA 707
PRIV LLS+S+N HVR G A A+GI+CAG GL AI +L+PLT D VDFVRQ A+IA++
Sbjct: 602 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 661
Query: 708 MVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SK 766
M+++Q E + +V + +I +KH++ ++K GA +A GI++AGGRNVTI+L +
Sbjct: 662 MILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENAD 721
Query: 767 TKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGL-NYDLKVPRFEFLSHAKPSL 825
T +VVGL +FSQFWYW+PL +F+SLSF+PT +IG+ D +P+F+ +AK
Sbjct: 722 TGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDA 781
Query: 826 FEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKS 885
F YP+ + K+ AVLST+ + ++
Sbjct: 782 FSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERET 841
Query: 886 SNEKDGDSMQVDXXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPS 943
+ + ++ + D +++ N R++P Q ++I F++D R+VPV+ +
Sbjct: 842 NKKGIKETKENDEEFYKNKYSSKPYKV-DNMTRILPQQSRYISFIKDDRFVPVRKFKGNN 900
Query: 944 GFVLLRDLRPNEPEVL 959
G V+LRD P EP L
Sbjct: 901 GVVVLRDREPKEPVAL 916
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 347/976 (35%), Positives = 527/976 (53%), Gaps = 84/976 (8%)
Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65
+++A LLA+L E+ S+K +AL ++N+ VDQ W EIS +P IE+LY+D+ F R+
Sbjct: 14 LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTF--SDREX 71
Query: 66 AALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESN 125
AAL+ SKV+Y LGE ++ YAL A FD+ E S +V T+++K+I+ Y SK +
Sbjct: 72 AALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEXYVQEASKQYTKD 131
Query: 126 DEAAN---VDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAI-------TRS 175
++ +DP+L +I ER ++KC+ + + A+GIA+E RLD +E A+ + S
Sbjct: 132 EQFYTKDIIDPKLTSIFERXIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTS 191
Query: 176 DNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVV 235
+NV ++Y + ++ + V P+ DYL++ + ++ L++ G+
Sbjct: 192 ENVK-IINYLLTLAITTVTNSKFRSSILRKSFDFLXNXPNCDYLTLNKVVVNLNDA-GLA 249
Query: 236 SILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPP 295
L K L+ EN D L+ QIAFDLV + Q L
Sbjct: 250 LQLFKKLKEEN--DEGLSAQIAFDLVSSASQQLL-------------------------- 281
Query: 296 SAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLY 355
++ + E T Q DP + ILSG + FL
Sbjct: 282 ----------EILVTELT------AQGYDPA----------LLNILSGLPTCDYYNTFLL 315
Query: 356 SHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAK 415
++ D+ +L K S++ + S+ H+A AN HAGTT ++F++ NL WL +A NWAK
Sbjct: 316 NNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFXHAGTTDNSFIKANLPWLGKAQNWAK 375
Query: 416 FSATAGLGVIHRGHLQQGRSLMAPXXXXXXXXXXXXXXXXXXXXYALGLIHANHGEGIKQ 475
F+ATA LGVIH+G+L +G+ + AP Y LGLI+A G
Sbjct: 376 FTATASLGVIHKGNLLEGKKVXAPYLPGSRASSRFIKGGSL---YGLGLIYAGFGRDTTD 432
Query: 476 FLRDSLRST-------NVEVIQHXXXXXXXXXXXXXXDEDIYDDIKNVLYTDSAVAGEAA 528
+L++ + +V+V+ H + ++Y+ +K VLY DSA +GEAA
Sbjct: 433 YLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAXGSANIEVYEALKEVLYNDSATSGEAA 492
Query: 529 GISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR 587
+ GL +GT +A + TY+ ETQH I RGLA+G+AL YGR+E AD LI +
Sbjct: 493 ALGXGLCXLGTGKPEAIHDXFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKXLA 552
Query: 588 DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ 647
+ +LRYGG + +ALAY+GT NN A+++LLH AVSD +DDVRR AV+ALGFVL +
Sbjct: 553 SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 612
Query: 648 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMA 707
PRIV LLS+S+N HVR G A A+GI+CAG GL AI +L+PLT D VDFVRQ A IA++
Sbjct: 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAXIALS 672
Query: 708 MVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SK 766
+++Q E + +V + +I +KH++ ++K GA +A GI +AGGRNVTI+L +
Sbjct: 673 XILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIXNAGGRNVTIQLENAD 732
Query: 767 TKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGL-NYDLKVPRFEFLSHAKPSL 825
T +VVGL FSQFWYW+PL +F+SLSF+PT +IG+ D +P+F+ +AK
Sbjct: 733 TGTLDTKSVVGLVXFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQXNCYAKEDA 792
Query: 826 FEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKS 885
F YP+ + K+ AVLST+ + ++
Sbjct: 793 FSYPRXYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERET 852
Query: 886 SNEKDGDSMQVDXXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPS 943
+ + ++ + D +++ N R++P Q ++I F++D R+VPV+ +
Sbjct: 853 NKKGIKETKENDEEFYKNKYSSKPYKV-DNXTRILPQQSRYISFIKDDRFVPVRKFKGNN 911
Query: 944 GFVLLRDLRPNEPEVL 959
G V+LRD P EP L
Sbjct: 912 GVVVLRDREPKEPVAL 927
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 581 LIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAV-------SDVSDDVRRTA 633
++ +TR+ P L++ +AL SGT+ N + + H AV SDDVR A
Sbjct: 84 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVV-IDHGAVPIFVKLLGSSSDDVREQA 142
Query: 634 VLALGFVLYSEPE 646
V ALG V P+
Sbjct: 143 VWALGNVAGDSPK 155
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 581 LIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAV-------SDVSDDVRRTA 633
++ +TR+ P L++ +AL SGT+ N + + H AV SDDVR A
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKV-VIDHGAVPIFVKLLGSSSDDVREQA 180
Query: 634 VLALGFVLYSEPE 646
V ALG V P+
Sbjct: 181 VWALGNVAGDSPK 193
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 232
Query: 411 TNW 413
NW
Sbjct: 233 QNW 235
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 232
Query: 411 TNW 413
NW
Sbjct: 233 QNW 235
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 232
Query: 411 TNW 413
NW
Sbjct: 233 QNW 235
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 232
Query: 411 TNW 413
NW
Sbjct: 233 QNW 235
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 232
Query: 411 TNW 413
NW
Sbjct: 233 QNW 235
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 181 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 235
Query: 411 TNW 413
NW
Sbjct: 236 QNW 238
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 232
Query: 411 TNW 413
NW
Sbjct: 233 QNW 235
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 232
Query: 411 TNW 413
NW
Sbjct: 233 QNW 235
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 157 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 211
Query: 411 TNW 413
NW
Sbjct: 212 QNW 214
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 157 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 211
Query: 411 TNW 413
NW
Sbjct: 212 QNW 214
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 177 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 231
Query: 411 TNW 413
NW
Sbjct: 232 QNW 234
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 156 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 210
Query: 411 TNW 413
NW
Sbjct: 211 QNW 213
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 351 LQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRA 410
LQ+LYS + D L + V++R++ C ++ I+ T D F +W++R
Sbjct: 157 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII----TPDLF-EGTAEWIARC 211
Query: 411 TNW 413
NW
Sbjct: 212 QNW 214
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 577 EADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD-VRRTAVL 635
+ T EQM + +L +GG + +N ++ + + S +SD ++ A L
Sbjct: 202 QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASL 261
Query: 636 ALGFVLYS 643
AL FVLY+
Sbjct: 262 ALAFVLYA 269
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 577 EADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD-VRRTAVL 635
+ T EQM + +L +GG + +N ++ + + S +SD ++ A L
Sbjct: 202 QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASL 261
Query: 636 ALGFVLYS 643
AL FVLY+
Sbjct: 262 ALAFVLYA 269
>pdb|3FID|A Chain A, Lpxr From Salmonella Typhimurium
pdb|3FID|B Chain B, Lpxr From Salmonella Typhimurium
Length = 296
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 399 FLRENLDWLSRATNWAKFSATAGLGVI 425
FL L+W S ATNW ++ +GVI
Sbjct: 82 FLHTGLEWNSLATNWLRYRLGTDIGVI 108
>pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2
Length = 308
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 668 ALAVGISCAGTGLSEAISLLEP----LTSDVVDFVRQGALIAMAMVMVQINEANDSRVGT 723
AL G++C+ + I+L+ P +T+ ++ R L ++ M I E + + G
Sbjct: 208 ALRAGLNCSTENMPIKINLIAPPRYVMTTTTLE--RTEGLSVLSQAMAVIKEKIEEKRGV 265
Query: 724 FRRQLE-KIILDKHEDTMSK 742
F Q+E K++ D E +++
Sbjct: 266 FNVQMEPKVVTDTDETELAR 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,590,949
Number of Sequences: 62578
Number of extensions: 910051
Number of successful extensions: 2048
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2014
Number of HSP's gapped (non-prelim): 29
length of query: 1003
length of database: 14,973,337
effective HSP length: 108
effective length of query: 895
effective length of database: 8,214,913
effective search space: 7352347135
effective search space used: 7352347135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)