BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001859
(1003 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus
GN=Psmd1 PE=1 SV=1
Length = 953
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/964 (50%), Positives = 658/964 (68%), Gaps = 48/964 (4%)
Query: 5 MVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQ 64
M++SA G++++L+E P LK AL LN+ V+ FW EIS SV IE LYEDE F RQ
Sbjct: 1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQ 58
Query: 65 LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAES 124
AAL+ SKVFY+LG +SL+YALGAG LF+V+++S+YV T++AK ID Y + E+
Sbjct: 59 FAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTK---QCVEN 115
Query: 125 ND----EAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 180
D E +D RLE IV +M +C+ D KY+QA+GIA+E RRLD E+ I S++V G
Sbjct: 116 ADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPG 175
Query: 181 TLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEK 240
L+Y + + S + +++R +VLR+LVK+Y L PD++++CQCL+FLD+P+ V ILEK
Sbjct: 176 MLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEK 235
Query: 241 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSA 297
L++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P +
Sbjct: 236 LVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGS 290
Query: 298 QNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSH 357
+ DS E + A +PK+ + L IK ILSGE +I+L LQFL +
Sbjct: 291 EKDSDPMETEEKTASAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRN 345
Query: 358 NKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS 417
N +DL+ILK K +V RNSVCH+AT+ AN+ MH GTT D FLR+NL+WL+RATNWAKF+
Sbjct: 346 NNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFT 403
Query: 418 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFL 477
ATA LGVIH+GH ++ LMA YLP+ + G S Y EGG LYALGLIHANHG I +L
Sbjct: 404 ATASLGVIHKGHEKEALQLMATYLPKDTSPG--SAYQEGGGLYALGLIHANHGGDIIDYL 461
Query: 478 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV 537
+ L++ + ++++HG LGLGLAA+GTA +D+YD +K LY D AV GEAAG+++GL+M+
Sbjct: 462 LNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVML 521
Query: 538 GTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYG 596
G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR
Sbjct: 522 GSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRS 581
Query: 597 GMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 656
GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLS
Sbjct: 582 GMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLS 641
Query: 657 ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 716
ESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E
Sbjct: 642 ESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEI 701
Query: 717 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVV 776
+V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VV
Sbjct: 702 TCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVV 761
Query: 777 GLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPT 836
G+ VF+QFW+W+PL +F+SL+++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP
Sbjct: 762 GVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPK 821
Query: 837 TTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQV 896
K+ AVLS TA+ + K + + D +
Sbjct: 822 EKEKEKVSTAVLSI--------------------TAKAKKKEKEKEKKEEEKMEVDEAEK 861
Query: 897 DAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNE 955
EKK EPEP+F++L NPARV+PAQ K + E RY P K + G ++L+D +
Sbjct: 862 KEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRYQPFKPLSIGGIIILKDTSEDV 921
Query: 956 PEVL 959
E++
Sbjct: 922 EELV 925
>sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus
GN=PSMD1 PE=2 SV=1
Length = 955
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/961 (50%), Positives = 661/961 (68%), Gaps = 40/961 (4%)
Query: 5 MVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQ 64
M++SA G++++L+E P LK AL LN+ V+ FW EIS SV IE LYEDE F RQ
Sbjct: 1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQ 58
Query: 65 LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAE- 123
AAL+ SKVFY+LG +SL+YALGAG LF+V+++S+YV T++AK ID Y + AE
Sbjct: 59 FAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENAEL 118
Query: 124 SNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLS 183
E VD RLE IV +M +C+ D KY+QA+GIA+E RRLD E+ I S++V G L+
Sbjct: 119 PEGEKKPVDERLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDIFEKTILESNDVPGMLA 178
Query: 184 YCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 243
Y + + S + +++R +VLR+LVK+Y L PD++++CQCL+FLD+P+ V ILEKL++
Sbjct: 179 YSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK 238
Query: 244 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQND 300
+D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P ++ D
Sbjct: 239 ---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKD 293
Query: 301 SSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKS 360
S E + T + +PK+ +++K+ ILSGE +I+L LQFL +N +
Sbjct: 294 SDAMEAEEKPGSTCVGKSAEINPEPKD-----QISKMIKILSGEMAIELHLQFLIRNNNT 348
Query: 361 DLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATA 420
DL+ILK K +V RNSVCH+AT+ AN+ MH GTT D FLR+NL+WL+RATNWAKF+ATA
Sbjct: 349 DLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATA 406
Query: 421 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDS 480
LGVIH+GH ++ LMA YLP+ + G S Y EGG LYALGLIHANHG I +L +
Sbjct: 407 SLGVIHKGHEKEALQLMATYLPKDTSPG--SAYQEGGGLYALGLIHANHGGDIIDYLLNQ 464
Query: 481 LRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTA 540
L++ + ++++HG LGLGLAA+GTA +D+YD +K LY D AV GEAAG+++GL+M+G+
Sbjct: 465 LKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSK 524
Query: 541 SEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMY 599
+ +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR GMY
Sbjct: 525 NAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMY 584
Query: 600 ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY 659
+A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLSESY
Sbjct: 585 TVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESY 644
Query: 660 NPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 719
NPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E
Sbjct: 645 NPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCP 704
Query: 720 RVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLS 779
+V FR+ K+I DKH+D M+K GAILA GILDAGG NV I L S+T H + +VVG+
Sbjct: 705 KVSQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVIISLQSRTGHTHMPSVVGVL 764
Query: 780 VFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTS 839
VF+QFW+W+PL +F+SL+F+PT +IGLN DLK+P+ ++ S+ KPS F YP P VP
Sbjct: 765 VFTQFWFWFPLSHFLSLAFTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPPPLEVPKEKE 824
Query: 840 AVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQVDAP 899
K+ AVLS +AKAK + K++ ++K++E+ K K +
Sbjct: 825 KEKVSTAVLSITAKAKKKEKEKEKEKKEEEKMEVDETEKKDEKEKKKEPEP--------- 875
Query: 900 PEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNEPEV 958
+F++L NPARV+PAQ K + E RY P K + G ++L+D + E+
Sbjct: 876 ---------NFQLLDNPARVMPAQLKVLTMTESCRYQPFKPLSIGGIIILKDTSEDMEEL 926
Query: 959 L 959
+
Sbjct: 927 V 927
>sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens
GN=PSMD1 PE=1 SV=2
Length = 953
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/955 (50%), Positives = 657/955 (68%), Gaps = 48/955 (5%)
Query: 5 MVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQ 64
M++SA G++++L+E P LK AL LN+ V+ FW EIS SV IE LYEDE F RQ
Sbjct: 1 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQ 58
Query: 65 LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAES 124
AAL+ SKVFY+LG +SL+YALGAG LF+V+++S+YV T++AK ID Y + E+
Sbjct: 59 FAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTK---QCVEN 115
Query: 125 ND----EAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 180
D E +D RLE IV +M +C+ D KY+QA+GIA+E RRLD E+ I S++V G
Sbjct: 116 ADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPG 175
Query: 181 TLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEK 240
L+Y + + S + +++R +VLR+LVK+Y L PD++++CQCL+FLD+P+ V ILEK
Sbjct: 176 MLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEK 235
Query: 241 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQND 300
L++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + +
Sbjct: 236 LVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGS 290
Query: 301 SSTAEDVQMNEGTPASNVNVQDE---DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSH 357
++ ++ E T ++ V E +PK+ + L IK ILSGE +I+L LQFL +
Sbjct: 291 EKDSDSMETEEKTSSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRN 345
Query: 358 NKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS 417
N +DL+ILK K +V RNSVCH+AT+ AN+ MH GTT D FLR+NL+WL+RATNWAKF+
Sbjct: 346 NNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFT 403
Query: 418 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFL 477
ATA LGVIH+GH ++ LMA YLP+ + G S Y EGG LYALGLIHANHG I +L
Sbjct: 404 ATASLGVIHKGHEKEALQLMATYLPKDTSPG--SAYQEGGGLYALGLIHANHGGDIIDYL 461
Query: 478 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV 537
+ L++ + ++++HG LGLGLAA+GTA +D+YD +K LY D AV GEAAG+++GL+M+
Sbjct: 462 LNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVML 521
Query: 538 GTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYG 596
G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR
Sbjct: 522 GSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRS 581
Query: 597 GMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 656
GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLS
Sbjct: 582 GMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLS 641
Query: 657 ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 716
ESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E
Sbjct: 642 ESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEI 701
Query: 717 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVV 776
+V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VV
Sbjct: 702 TCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVV 761
Query: 777 GLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPT 836
G+ VF+QFW+W+PL +F+SL+++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP
Sbjct: 762 GVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPK 821
Query: 837 TTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQV 896
K+ AVLS TA+ + K + + D +
Sbjct: 822 EKEKEKVSTAVLSI--------------------TAKAKKKEKEKEKKEEEKMEVDEAEK 861
Query: 897 DAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRD 950
EKK EPEP+F++L NPARV+PAQ K + E RY P K + G ++L+D
Sbjct: 862 KEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKD 916
>sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus
GN=Psmd1 PE=2 SV=1
Length = 953
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/955 (50%), Positives = 654/955 (68%), Gaps = 48/955 (5%)
Query: 5 MVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQ 64
M++SA G++++L+E P LK AL LN+ V+ FW EIS SV IE LYEDE F RQ
Sbjct: 1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQ 58
Query: 65 LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAES 124
AAL+ SKVFY+LG +SL+YALGAG LF+V+++S+YV T++AK ID Y + E+
Sbjct: 59 FAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTK---QCVEN 115
Query: 125 ND----EAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 180
D E +D RLE IV +M +C+ D KY+QA+GIA+E RRLD E+ I S++V G
Sbjct: 116 ADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPG 175
Query: 181 TLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEK 240
L+Y + + S + +++R +VLR+LVK+Y L PD++++CQCL+FLD+ + V ILEK
Sbjct: 176 MLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDTQAVSDILEK 235
Query: 241 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSA 297
L++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P
Sbjct: 236 LVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGP 290
Query: 298 QNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSH 357
+ DS + E + G A +PK+ + L IK ILSGE +I+L LQFL +
Sbjct: 291 EKDSDSMETEEKTAGAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRN 345
Query: 358 NKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS 417
N +DL+ILK K +V RNSVCH+AT+ AN+ MH GTT D FLR+NL+WL+RATNWAKF+
Sbjct: 346 NNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFT 403
Query: 418 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFL 477
ATA LGVIH+GH ++ LMA YLP+ + G S Y EGG LYALGLIHANHG I +L
Sbjct: 404 ATASLGVIHKGHEKEALQLMATYLPKDTSPG--SAYQEGGGLYALGLIHANHGGDIIDYL 461
Query: 478 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV 537
+ L++ + ++++HG LGLGLAA+GTA +D+YD +K LY D AV GEAAG+++GL+M+
Sbjct: 462 LNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVML 521
Query: 538 GTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYG 596
G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR
Sbjct: 522 GSKNTQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRS 581
Query: 597 GMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 656
GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLS
Sbjct: 582 GMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLS 641
Query: 657 ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 716
ESYNPHVRYGAA+A+G+ CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E
Sbjct: 642 ESYNPHVRYGAAMALGVCCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEI 701
Query: 717 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVV 776
+V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VV
Sbjct: 702 TCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVV 761
Query: 777 GLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPT 836
G+ VF+QFW+W+PL +F+SL+++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP
Sbjct: 762 GVLVFTQFWFWFPLSHFLSLAYTPTCIIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPK 821
Query: 837 TTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQV 896
K+ AVLS TA+ + K + + D +
Sbjct: 822 EKEKEKVSTAVLSI--------------------TAKAKKKEKEKEKKEEEKMEVDEAEK 861
Query: 897 DAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRD 950
EKK EPEP+F++L NPARV+PAQ K + E RY P K + G ++L+D
Sbjct: 862 KEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRYQPFKPLSIGGIIILKD 916
>sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii
GN=PSMD1 PE=2 SV=1
Length = 953
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/955 (50%), Positives = 657/955 (68%), Gaps = 48/955 (5%)
Query: 5 MVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQ 64
M++SA G++++L+E P LK AL LN+ V+ FW EIS SV IE LYEDE F RQ
Sbjct: 1 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQ 58
Query: 65 LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAES 124
AAL+ SKVFY+LG +SL+YALGAG LF+V+++S+YV T++AK ID Y + E+
Sbjct: 59 FAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTK---QCVEN 115
Query: 125 ND----EAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 180
D E +D RLE IV +M +C+ D KY+QA+GIA+E RRLD E+ I S++V G
Sbjct: 116 ADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPG 175
Query: 181 TLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEK 240
L+Y + + S + +++R +VLR+LVK+Y L PD++++CQCL+FLD+P+ V ILEK
Sbjct: 176 MLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEK 235
Query: 241 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQND 300
L++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + +
Sbjct: 236 LVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGS 290
Query: 301 SSTAEDVQMNEGTPASNVNVQDE---DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSH 357
++ ++ E T ++ V E +PK+ + L IK ILSGE +I+L LQFL +
Sbjct: 291 EKDSDSMETEEKTGSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRN 345
Query: 358 NKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS 417
N +DL+ILK K +V RNSVCH+AT+ AN+ MH GTT D FLR+NL+WL+RATNWAKF+
Sbjct: 346 NNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFT 403
Query: 418 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFL 477
ATA LGVIH+GH ++ LMA YLP+ + G S Y EGG LYALGLIHANHG I +L
Sbjct: 404 ATASLGVIHKGHEKEALQLMATYLPKDTSPG--SAYQEGGGLYALGLIHANHGGDIIDYL 461
Query: 478 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV 537
+ L++ + ++++HG LGLGLAA+GTA +D+YD +K LY D AV GEAAG+++GL+M+
Sbjct: 462 LNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVML 521
Query: 538 GTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYG 596
G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR
Sbjct: 522 GSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRS 581
Query: 597 GMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 656
GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLS
Sbjct: 582 GMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLS 641
Query: 657 ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 716
ESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E
Sbjct: 642 ESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEI 701
Query: 717 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVV 776
+V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VV
Sbjct: 702 TCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVV 761
Query: 777 GLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPT 836
G+ VF+QFW+W+PL +F+SL+++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP
Sbjct: 762 GVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPK 821
Query: 837 TTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQV 896
K+ AVLS TA+ + K + + D +
Sbjct: 822 EKEKEKVSTAVLSI--------------------TAKAKKKEKEKEKKEEEKMEVDEAEK 861
Query: 897 DAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRD 950
EKK EPEP+F++L NPARV+PAQ K + E RY P K + G ++L+D
Sbjct: 862 KEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKD 916
>sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila
melanogaster GN=Rpn2 PE=1 SV=1
Length = 1020
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/988 (47%), Positives = 659/988 (66%), Gaps = 55/988 (5%)
Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65
++SA G++++L+E P LK+ AL L++ VD+FWPEIS S+ IE L+ED F +++ L
Sbjct: 3 LTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENK--L 60
Query: 66 AALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESN 125
A ++ SKVFY+LG D+L+YALGAG LFDV+ ++Y T++AK ID Y + + + E+
Sbjct: 61 AGMVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAKCIDFYIAQRVEFIENP 120
Query: 126 DEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYC 185
EA+ VD RLE IV RM+ +C+ D +++QA+GIA+E RR+D ++AI +SD+V G L+Y
Sbjct: 121 KEASVVDERLEGIVNRMIQRCLDDNQFRQALGIALETRRMDTFKDAIMKSDDVRGMLAYA 180
Query: 186 INVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSE 245
NV+ S + R +R EVLR LV +Y+ L PDY+++CQCL+FL++P V +L+ L RS
Sbjct: 181 YNVTMSLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSS 240
Query: 246 NKDDALLAFQIAFDLVENEHQAFLLNVRDHL----PVPKTQPLQTVQP---GSNDPPSAQ 298
+ + L+A+QIAFDL E+ Q FL NV HL P+P P T +P S D ++
Sbjct: 241 VETNNLMAYQIAFDLYESATQEFLGNVLQHLKNTAPIPTALP-STFKPQGTTSEDGAKSE 299
Query: 299 NDSSTAEDVQMNEGTPASNV---NVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLY 355
D S + D + E TPA + + + E ++ + + K+ ILSGE SI L LQFL
Sbjct: 300 GDKSKS-DEDITEETPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQFLI 358
Query: 356 SHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAK 415
N +DL +L+ K++V R S+CH+AT+ ANA MH+GTT D FLR+NLDWL+RATNWAK
Sbjct: 359 RSNHADLQVLRGTKEAV--RVSICHTATVIANAFMHSGTTSDQFLRDNLDWLARATNWAK 416
Query: 416 FSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQ 475
+ATA LGVIHRGH + +LM YLP+ G S YSEGGALYALGLIHANHG I
Sbjct: 417 LTATASLGVIHRGHEKDSLALMQSYLPK--EAGPSSGYSEGGALYALGLIHANHGANIID 474
Query: 476 FLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLL 535
+L L+ E ++HG CLGLGLA +GT +D+Y+ +K LY D AV GEAAGI+MG++
Sbjct: 475 YLLQQLKDAQNENVRHGGCLGLGLAGMGTHRQDLYEQLKFNLYQDDAVTGEAAGIAMGMV 534
Query: 536 MVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILR 594
M+G+ + +A E M++YA ETQHEKI+RGLA+GI+LT++ R EEAD L+ ++ D+DP+LR
Sbjct: 535 MLGSKNAQAIEDMVSYAQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSDKDPVLR 594
Query: 595 YGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL 654
GMY +A+AY+GT +NKAIR+LLH AVSDV+DDVRR AV A+GF+L+ PEQ P +VSL
Sbjct: 595 RSGMYTIAMAYNGTGSNKAIRKLLHVAVSDVNDDVRRAAVTAIGFILFRSPEQCPSVVSL 654
Query: 655 LSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQI 713
L+ESYNPHVRYGAA+A+GI+CAGTGL EAI+LLEP+ D V+FVRQGALIA AM+++Q
Sbjct: 655 LAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVRQGALIASAMILIQH 714
Query: 714 NEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKIT 773
+ + + FR+ ++I +KHED M+K GAILA GI+DAGGRN T+ L S+T H +
Sbjct: 715 TDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLSLQSRTGHTNLQ 774
Query: 774 AVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTT 833
AVVG+ F+Q+WYW+PL + +SL+F+PT +IGLN DLK+P+ E+ S AKPSL+ YP P
Sbjct: 775 AVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYAYPAPLE 834
Query: 834 VPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDS 893
+ K+ AVLS +A+ K R + A++KE EK ++ A K K +
Sbjct: 835 EKKSEEREKVATAVLSIAARQKRR--ENADKKEDEKMDVDEDSKEGAAVKKDEEAKADEK 892
Query: 894 M---------------------------------QVDAPPEKKAEPEPSFEILINPARVV 920
M + ++K EPEP+ EIL NPARV+
Sbjct: 893 MVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQNPARVL 952
Query: 921 PAQEKFIKFLEDSRYVPVKSAPSGFVLL 948
Q K + ++ Y P+K G +++
Sbjct: 953 RQQLKVLSVIDGQSYEPLKDVTIGGIIV 980
>sp|Q54JM5|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium
discoideum GN=psmD1 PE=1 SV=1
Length = 975
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1013 (45%), Positives = 673/1013 (66%), Gaps = 58/1013 (5%)
Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEI-STSVPIIESLYEDEEFDQHQRQ 64
++S L++L+E LK ++L L+S VD+FW EI S+S+ I+SL +++F +H+
Sbjct: 4 INSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIKSLSVNKQFPKHE-- 61
Query: 65 LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAES 124
LA+L++SKV+Y L + +S+ YAL AGSLF+V S+Y+ TLL K IDEY +++ S
Sbjct: 62 LASLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKFIDEYIKLRT----S 117
Query: 125 NDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSY 184
++ ++P LE+IV M D+C +G Y+QA+GIAIE RRLD +E+AI++S NV+ LSY
Sbjct: 118 TNKDTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQSGNVNSMLSY 177
Query: 185 CINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRS 244
C+++ + VN R +R VL +LV ++ PDYLS+ QCL+FLD V +IL L++
Sbjct: 178 CLHICNVSVNNRHFRHSVLGILVNLHLAQEKPDYLSVVQCLIFLDNHIEVATILLSLIK- 236
Query: 245 ENKDDALLAFQIAFDLVENEHQAFLLNVRDHLP-VPKTQPLQTVQPGSNDPPSAQNDSST 303
++++ LLA+QI FDL +N Q FLLNVR+ LP V K T ++D DS
Sbjct: 237 KDEESLLLAYQIGFDLFQNSTQQFLLNVRNRLPPVEKKSTTTTTTTPASDSMEIDIDSG- 295
Query: 304 AEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLL 363
NE + S+ + +RL ++ IL G+ SI + L+FLY + +D+
Sbjct: 296 ------NEKSGGSSS-----------FEQRLERLHSILIGDVSIGMNLEFLYRNCSTDMH 338
Query: 364 ILKTIKQSVEM-RNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGL 422
IL+++K + E+ + ++ +S T++ANA+MHAGTT DTFLR N++WL ++T+W KFSA + L
Sbjct: 339 ILQSMKTTSELHKGAIFYSGTLFANALMHAGTTRDTFLRSNIEWLYKSTHWTKFSAISSL 398
Query: 423 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLR 482
GVI++GH+++ +SL+ YLP GA +PYSE G+LYALGLIHA+HGE I +L + L
Sbjct: 399 GVINKGHIKESKSLLKTYLP--GASVNQTPYSESGSLYALGLIHASHGEEIIDYLVEKLH 456
Query: 483 STNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE 542
N ++ HGA LGLGLAA+ T +D+Y+D+K+VLY D AV+GEAAG++MGL+M+G+ ++
Sbjct: 457 INNA-ILHHGASLGLGLAAMATGRDDLYEDLKSVLYNDDAVSGEAAGLAMGLVMLGSGAK 515
Query: 543 KA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL 601
KA EML YAHETQHEK IR L++G+A +YG+EE ADTLIEQM D+DP++RYGGMYA+
Sbjct: 516 KAIEEMLAYAHETQHEKTIRSLSMGLAFLMYGKEESADTLIEQMIGDKDPLIRYGGMYAI 575
Query: 602 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP 661
A AY GT +N A+R+LLH AVSD +D VRR AV +GFVL +PE+ P+ ++LL+ESYNP
Sbjct: 576 AFAYCGTGHNDALRKLLHVAVSDGTDSVRRAAVTCIGFVLSRQPEKCPKAIALLAESYNP 635
Query: 662 HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV 721
HVRYGAA A+GI+CAGTG +A+ +L+ LT+D V +V+Q A I+MAMV++Q ++
Sbjct: 636 HVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMAMVLIQTSKELVPEA 695
Query: 722 GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVF 781
T R+ I DK ED+MSK GA+LA G++DAGGRN TI+L S + H + A+VG++ F
Sbjct: 696 ETARKLFATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQLHSPSGHKNMNAIVGIAGF 755
Query: 782 SQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAV 841
QFWYW+P+ +F+ L+ +PT++IGLN +L++P F F S+ +PSLF YP T TT+S
Sbjct: 756 LQFWYWFPMTHFMGLALTPTSIIGLNKNLEMPVFTFKSNCRPSLFAYPPETKPSTTSSTN 815
Query: 842 KLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQVDAPPE 901
K+ A+LS S K K ++ + A ++ D+ K + ++ + +
Sbjct: 816 KIETAILSYSRKNKLQSSRSAMNIDQ--------DVEKKEKEEKEAKEKEAKEKEEKEAA 867
Query: 902 KKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPS-GFVLLRDLRPNEPEVLS 960
K E EP FE NPAR+VP Q ++++F +D+RY P+K +P+ G V+LRDL PNEPE L
Sbjct: 868 KAEEKEPLFERKSNPARIVPRQLQYVQF-DDARYQPIKKSPAIGIVMLRDLTPNEPEQLV 926
Query: 961 LTDAPSSTQSPAGGGSTTGQQGSASAMA-----------VDEEPQPPAPFEYT 1002
+ + P + Q G Q G+A+A A EP P PFE+T
Sbjct: 927 VKEKPETKQETVG-----NQSGTATATASLPNATTTTSPTLPEPSTPEPFEFT 974
>sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1
Length = 965
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/1008 (44%), Positives = 638/1008 (63%), Gaps = 68/1008 (6%)
Query: 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQR 63
++++SAGGL+A+L+E L++HAL + F+DQ WPEIS V IE +YED F + R
Sbjct: 10 SIITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPE--R 67
Query: 64 QLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAE 123
+LAAL+VSKV+YYLGE +++L +AL +G F ++SDY TL+ K ID + KS
Sbjct: 68 ELAALVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFKCIDMFIH-KSAELY 126
Query: 124 SNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLS 183
N +A +D RL +VE + KC +++ +GIAIE RLD +E I +D
Sbjct: 127 KNPKADPLDERLSGVVEGIFQKCYAKNEWRHVLGIAIEAHRLDIIE-YILNADKETDLKP 185
Query: 184 YCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 243
Y + ++ + V E+R +LRLL+ + PDY S+ +C++ L++ +L KL
Sbjct: 186 YVLELAMTVVLDIEFRNRLLRLLLSSFLTETEPDYFSVGKCVVHLNDASVAAKLLMKL-S 244
Query: 244 SENKDDALL-AFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSS 302
S+N D +LL A+Q+AFDL ++ Q FL +V D LP P ++
Sbjct: 245 SQNDDKSLLTAYQLAFDLEDSAPQEFLNSVMDLLPSPSV-------------------AN 285
Query: 303 TAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDL 362
+ ED +N + + ED Y R ILSGE +++ +FLY+HN +D+
Sbjct: 286 SEED---------ANADSKKEDSSPCGYIIR------ILSGEQTVKYDREFLYAHNNTDM 330
Query: 363 LILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGL 422
LIL K S+E RNSV H+A +ANA M+ GT+ D+F R+NL WLS+A NW+KF+ATA L
Sbjct: 331 LILNRTKDSLEARNSVFHNAVTFANAFMNFGTSSDSFFRDNLSWLSKANNWSKFTATAAL 390
Query: 423 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLR 482
GVIHRG+ Q +++ PYLP+ A S YSEGGA YA+GLIHANHG G+ ++LR+ L+
Sbjct: 391 GVIHRGYYNQAMNILRPYLPEEDAPSS-STYSEGGAFYAMGLIHANHGRGVTEYLREQLK 449
Query: 483 STNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE 542
T E++Q+G LG+GL + + DE +Y+ +K +L+ D+AVAG AAGISMGL+M+GTAS
Sbjct: 450 HTEDEIVQYGLLLGIGLTGMASRDETLYESVKTILFNDNAVAGSAAGISMGLIMLGTASS 509
Query: 543 KA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL 601
A EML YAHETQHEKIIRGL +GIAL VYGR++EAD +I+++ D DP LRY GM+A
Sbjct: 510 AAIDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTLRYAGMFAT 569
Query: 602 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP 661
ALAY GT+N+K +R +LH +VSDV+DDVRR AV ALGF+ + +P V LL +SYNP
Sbjct: 570 ALAYCGTSNSKIVRDVLHISVSDVNDDVRRAAVCALGFICFKDPNALISTVELLVDSYNP 629
Query: 662 HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV 721
HVRYG+A+A+GI+CA +G + A+ LL L D DFVRQGA+IA AM++ Q N+ +S+V
Sbjct: 630 HVRYGSAIALGIACANSGSNAALDLLSRLVEDATDFVRQGAMIAQAMILTQHNDQLNSKV 689
Query: 722 GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVF 781
R+ E++I +KHED ++K+GA LA GI+DAGGRNVTI L + T K++A+VGL+VF
Sbjct: 690 SGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTIALQTATGSLKLSAIVGLTVF 749
Query: 782 SQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAV 841
Q+WYW+PL +F+SLSFSPTALIGL+ +L P+F F+S+ +P LF YP + PT +
Sbjct: 750 LQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRPKLFAYPPKSVQPTAKTVQ 809
Query: 842 KLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQVDAPPE 901
K+ AVLST+ KA+ARAK+ E+EKA+ D K++ EK+ M++D
Sbjct: 810 KVETAVLSTTVKAQARAKR----AEREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKS 865
Query: 902 K-------KAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPN 954
+ + EP E L N RVVPAQ +I F + RY PV+ G ++L D +
Sbjct: 866 QDISINGNSKKEEPKSETLENFTRVVPAQLPYISFNLNGRYYPVRKFTGGVLMLIDRESD 925
Query: 955 E-PEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEY 1001
+ P+++ L + PA + G+Q E PP FEY
Sbjct: 926 KAPDLIEL----NRDAVPASADTEPGEQ----------EASPPEDFEY 959
>sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN2 PE=3 SV=1
Length = 930
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/983 (39%), Positives = 591/983 (60%), Gaps = 85/983 (8%)
Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65
V +A LLA+L E ++K +AL ++N VDQ W E+S + IE+LYED +F+ R+L
Sbjct: 3 VITAAPLLALLREDDHTVKSYALHSINEVVDQLWSEVSNDITDIEALYEDSKFED--RKL 60
Query: 66 AALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESN 125
AAL+VSK++Y LGE ++ YAL A FD++E S YV T+++++I+ Y IK
Sbjct: 61 AALVVSKIYYNLGEYESAVRYALAAEEYFDINEKSRYVETIVSQSIEMY--IKLATENYG 118
Query: 126 DEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSD---NVHGTL 182
E + +D +L +I ERML+KCIT G+Y+ A+GIA+E RLD + +T+ N+ +
Sbjct: 119 KEKSEIDLQLVSIFERMLNKCITAGEYKLALGIALESYRLDVVTNILTQQTSEPNMLKLI 178
Query: 183 SYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLL 242
+Y + + + V+ ++ +L L + +L +PDY ++ + ++ L++ + + +KL+
Sbjct: 179 TYVLIAATTTVSNTHFKINILYALFDILIRLKAPDYFAVSKIIVNLNDSKLAARLFDKLV 238
Query: 243 RSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSS 302
+N + +A+QIAFDLV + Q L + + T+ G +
Sbjct: 239 SEKNTE---IAYQIAFDLVTSASQGLL-----------NELVATLSTGEGN--------- 275
Query: 303 TAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDL 362
+++ ILSG + FL+++ + D
Sbjct: 276 --------------------------------DRLVEILSGLPTCDFYNTFLHANKRIDR 303
Query: 363 LILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGL 422
+L K S++ + S+ H+A +NA MHAGTT DTF+R NL WL +A NWAKF+ATA L
Sbjct: 304 SLLNKSKSSMDGKFSLFHTAVSVSNAFMHAGTTDDTFVRANLQWLGKAQNWAKFTATASL 363
Query: 423 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSL- 481
G+IH+G+L G+ +M PYLP A S Y +GG+LY LGLI+A +G+ I +L+D +
Sbjct: 364 GIIHQGNLTGGKKIMEPYLPGSRAS---SRYIKGGSLYGLGLIYAGYGKEIIGYLKDQIV 420
Query: 482 -RSTN-----VEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLL 535
S+N V+V+ HGA LG+GLA + + +I++ +K VLY DSA +G AA + +GL
Sbjct: 421 ENSSNATDDDVDVLLHGASLGIGLAGMSSNSTEIFEALKEVLYADSANSGAAAALGIGLT 480
Query: 536 MVGTASEKAGEML-TYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILR 594
M+G+ E E L TYA ET H +I +GLA+ +AL YGREE AD I++M ++ +R
Sbjct: 481 MLGSGDETVAENLYTYAQETSHGEITKGLAIALALLNYGREELADETIKKMLEHENDSMR 540
Query: 595 YGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL 654
YG +Y +ALAY+GT++N+A+++LLH AVSD +DDVRR +V ALGFVL + PRIV L
Sbjct: 541 YGAVYTIALAYAGTSSNEAVKKLLHVAVSDSNDDVRRASVTALGFVLIRDYTTVPRIVEL 600
Query: 655 LSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQIN 714
LSES+NPHVR G A A+G++CAG GL AI +LEPLT+D VDFVRQ A+IA++M+++Q
Sbjct: 601 LSESHNPHVRCGTAFALGVACAGRGLQAAIDVLEPLTNDPVDFVRQAAMIALSMILIQQT 660
Query: 715 EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SKTKHDKIT 773
E + +V QL +I +KH++ ++K GA +A GI++AGGRNVTI+L S+
Sbjct: 661 EKTNVKVRDVNEQLRNVIANKHQEGLAKFGACVAQGIINAGGRNVTIQLENSEMGTLNTK 720
Query: 774 AVVGLSVFSQFWYWYPLIYFISLSFSPTALIGL-NYDLKVPRFEFLSHAKPSLFEYPKPT 832
+V+GL++F+QFWYW+PL +F+SLSF+PT IG+ ++DLK+P+F F H K +F+YP
Sbjct: 721 SVIGLAMFTQFWYWFPLAHFLSLSFTPTTTIGVRSHDLKIPKFSFHCHTKEGIFDYPPMF 780
Query: 833 TVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGD 892
S K+ AVLST+AKAKARAKK + K E D S + ++D
Sbjct: 781 EEDIDKSIEKVATAVLSTTAKAKARAKKSKKDKAVEP------DKSKEEIKVENEQRDKK 834
Query: 893 SMQVDAPPEK-KAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPSGFVLLR 949
D P E+ K + ++ + N RVVP Q K+I F +D R+ PV+ +G ++L
Sbjct: 835 EHDADVPEEEFKIKYTSTYYKVENMTRVVPQQLKYIAFPKDERFTPVRKFKGSNGVIVLS 894
Query: 950 DLRPNEP-EVLSLTDAPSSTQSP 971
D P+EP EV+ T +P
Sbjct: 895 DKTPDEPVEVIKTVRQEKETDAP 917
>sp|P32565|RPN2_YEAST 26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN2 PE=1 SV=4
Length = 945
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/976 (39%), Positives = 584/976 (59%), Gaps = 84/976 (8%)
Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65
+++A LLA+L E+ S+K +AL ++N+ VDQ W EIS +P IE+LY+D+ F R++
Sbjct: 3 LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTF--SDREM 60
Query: 66 AALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESN 125
AAL+ SKV+Y LGE ++ YAL A FD+ E S +V T+++K+I+ Y SK +
Sbjct: 61 AALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKD 120
Query: 126 DEAAN---VDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAI-------TRS 175
++ +DP+L +I ERM++KC+ + + A+GIA+E RLD +E A+ + S
Sbjct: 121 EQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTS 180
Query: 176 DNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVV 235
+NV ++Y + ++ + V ++R +LR +P+ DYL++ + ++ L++ G+
Sbjct: 181 ENVK-IINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDA-GLA 238
Query: 236 SILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPP 295
L K L+ EN D L+ QIAFDLV + Q L
Sbjct: 239 LQLFKKLKEEN--DEGLSAQIAFDLVSSASQQLL-------------------------- 270
Query: 296 SAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLY 355
++ + E T Q DP + ILSG + FL
Sbjct: 271 ----------EILVTELT------AQGYDPA----------LLNILSGLPTCDYYNTFLL 304
Query: 356 SHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAK 415
++ D+ +L K S++ + S+ H+A AN MHAGTT ++F++ NL WL +A NWAK
Sbjct: 305 NNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAK 364
Query: 416 FSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQ 475
F+ATA LGVIH+G+L +G+ +MAPYLP A S + +GG+LY LGLI+A G
Sbjct: 365 FTATASLGVIHKGNLLEGKKVMAPYLPGSRAS---SRFIKGGSLYGLGLIYAGFGRDTTD 421
Query: 476 FLRDSLRST-------NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAA 528
+L++ + +V+V+ HGA LG+GLAA+G+A+ ++Y+ +K VLY DSA +GEAA
Sbjct: 422 YLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAA 481
Query: 529 GISMGLLMVGTAS-EKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR 587
+ MGL M+GT E +M TY+ ETQH I RGLA+G+AL YGR+E AD LI +M
Sbjct: 482 ALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA 541
Query: 588 DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQ 647
+ +LRYGG + +ALAY+GT NN A+++LLH AVSD +DDVRR AV+ALGFVL +
Sbjct: 542 SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 601
Query: 648 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMA 707
PRIV LLS+S+N HVR G A A+GI+CAG GL AI +L+PLT D VDFVRQ A+IA++
Sbjct: 602 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 661
Query: 708 MVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SK 766
M+++Q E + +V + +I +KH++ ++K GA +A GI++AGGRNVTI+L +
Sbjct: 662 MILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENAD 721
Query: 767 TKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGL-NYDLKVPRFEFLSHAKPSL 825
T +VVGL +FSQFWYW+PL +F+SLSF+PT +IG+ D +P+F+ +AK
Sbjct: 722 TGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDA 781
Query: 826 FEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKS 885
F YP+ + K+ AVLST+A+AKARAKK ++K + +K + ++
Sbjct: 782 FSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERET 841
Query: 886 SNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPS 943
+ + ++ + D K +++ N R++P Q ++I F++D R+VPV+ +
Sbjct: 842 NKKGIKETKENDEEFYKNKYSSKPYKV-DNMTRILPQQSRYISFIKDDRFVPVRKFKGNN 900
Query: 944 GFVLLRDLRPNEPEVL 959
G V+LRD P EP L
Sbjct: 901 GVVVLRDREPKEPVAL 916
>sp|Q6FIP2|RPN2_CANGA 26S proteasome regulatory subunit RPN2 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN2 PE=3 SV=1
Length = 941
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/977 (38%), Positives = 572/977 (58%), Gaps = 96/977 (9%)
Query: 6 VSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65
+++A LLA+L E +K +AL ++N VDQFW E+S +P IE+LY+D F R++
Sbjct: 3 LTTAAPLLALLKEKDAEVKAYALQSINEGVDQFWSEVSNDLPEIEALYDDNGF--QDRKM 60
Query: 66 AALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESN 125
AAL+ SKV+Y LGE ++ YAL A FD+ E + YV T+++K+I+ Y + ++ +
Sbjct: 61 AALIASKVYYNLGEYESAVKYALAAEEKFDIDEKTQYVETIVSKSIEMYIKLATEIYNKS 120
Query: 126 DEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITR---SDNVHGT- 181
E N+DP+L + E+M+ KC +Y+ A+GIA+E RLD ++ + D G+
Sbjct: 121 GEQVNLDPKLTIVFEKMMTKCTQANEYKLALGIALEAFRLDVVKSILQERLGEDQEGGSM 180
Query: 182 --LSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILE 239
+SY + + + V +++ E+LRLL + L + DY + ++ L++PE + E
Sbjct: 181 KLMSYVLTAATTTVFNSKFKDEILRLLFDLLMPLKNADYFITSKVVVNLNDPELATQLFE 240
Query: 240 KLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQN 299
KL E + +++QIAFDLV + Q L + +L
Sbjct: 241 KLHDEEQIE---VSYQIAFDLVSSASQHLLEKLHHNL------------------SERSY 279
Query: 300 DSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNK 359
DS E + G P + K+ I LNK K L G+ S+
Sbjct: 280 DSGLLEILT---GIPTCDYYNTFLLNKKNIDISLLNKSKSSLDGKFSL------------ 324
Query: 360 SDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSAT 419
H+A +N MHAGTT ++F++ NL WL +A NWAKFSAT
Sbjct: 325 -------------------FHTAVSVSNGYMHAGTTDNSFIKANLSWLGKAQNWAKFSAT 365
Query: 420 AGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRD 479
A LGVIH+G+L G+ +MAPYLP S + +GG+LY LGLI+A G I +L+
Sbjct: 366 ASLGVIHKGNLIDGKKVMAPYLP---GSRSSSRFIKGGSLYGLGLIYAGFGRDIVDYLKT 422
Query: 480 SLRST-------NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISM 532
L +V+V+ HGA LG+GLAA+GTA+ ++Y+ +K+VLY D A +GEAA +
Sbjct: 423 HLIENSGTTGDEDVDVLLHGASLGVGLAAMGTANNEVYEALKDVLYNDVATSGEAAAFGI 482
Query: 533 GLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDP 591
GL ++GT E A ++ TYA ET H I RGL++ +AL YGR+E+AD LI++M ++
Sbjct: 483 GLTLLGTGDETAINDLFTYAQETSHGNITRGLSMALALINYGRQEQADELIDKMLASENS 542
Query: 592 ILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRI 651
++RYGG +++ALAY GT NNK +++LLH AVSD +DDVRR AV ALGFVL + PRI
Sbjct: 543 LIRYGGAFSIALAYVGTGNNKVVKKLLHLAVSDSNDDVRRAAVTALGFVLLRDYTTVPRI 602
Query: 652 VSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMV 711
V LL+ES+N H R GAA A+GI+CAG GL AI +LEP+T D DFVRQ A+I++++VM+
Sbjct: 603 VQLLAESHNAHDRCGAAFALGIACAGKGLQAAIDVLEPMTKDPADFVRQAAMISLSLVMI 662
Query: 712 QINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SKTKHD 770
Q E + +V + +I +KH++ ++K GA +A GI++AGGRNVTI+L ++T
Sbjct: 663 QQTEKMNPKVASINSHFLSVITNKHQEGLAKFGACVALGIMNAGGRNVTIQLENAETGTL 722
Query: 771 KITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLN-YDLKVPRFEFLSHAKPSLFEYP 829
+VVGL++F+QFWYW+P+ +F+SLSF+PT ++G+ DL +P+F+ +A+ +F YP
Sbjct: 723 DTKSVVGLAMFTQFWYWFPMAHFLSLSFTPTTIVGVRGSDLNIPKFDMNCYAREDVFSYP 782
Query: 830 KPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSA--------G 881
K K+ A+LST+A+AKARAKK ++K+ + +K +
Sbjct: 783 KMFEESADKEVEKVATAILSTTARAKARAKKTKKEKDTNEDDKKKKEKDLKKEETKKDDA 842
Query: 882 KGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVK-- 939
K +S E+D + + + P K + N +RV+P Q K+++F+++ R+ PV+
Sbjct: 843 KKESEAEEDFNKNRYSSKPYK----------IENMSRVLPQQLKYVQFIKEERFTPVRKF 892
Query: 940 SAPSGFVLLRDLRPNEP 956
+G V+L+D +P+EP
Sbjct: 893 KGTNGVVVLKDNKPSEP 909
>sp|Q18115|PSMD1_CAEEL 26S proteasome non-ATPase regulatory subunit 1 OS=Caenorhabditis
elegans GN=rpn-2 PE=3 SV=4
Length = 965
Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust.
Identities = 321/994 (32%), Positives = 532/994 (53%), Gaps = 91/994 (9%)
Query: 23 LKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELND 82
L L A ++ + V+ W E++ ++P +E L ++ F +H AALLVSKV++ L +
Sbjct: 37 LVLKAFNDWDVLVNT-WFEVADALPAVEQLLDNNTFPEHSS--AALLVSKVYFCLEQYER 93
Query: 83 SLSYALGAGSLFDV--------SEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPR 134
+L +AL F+V D++YV+ ++ AID Y ++ + + + + +
Sbjct: 94 ALEFALRGD--FNVVPATRTGLGNDAEYVNKIIETAIDTYKTL-------SKQGSGIPQK 144
Query: 135 LEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITR--SDNVHGTLSYCINVSHSF 192
L +++R++ + + + + + E L ++ AI+ +D + + +
Sbjct: 145 LRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAISAMPADLTIKNQTTLVETLNRV 204
Query: 193 VN---RREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDD 249
VN R +R +V+ ++K Y K PSPD IC+C + D E + L+ K
Sbjct: 205 VNGAFDRSFRFQVIDTVIKTYLKCPSPDMSKICECYVLTDNAEAAADTITSLIA---KSL 261
Query: 250 ALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQM 309
+ A+QIAFDL E Q FL V L+ Q Q D+
Sbjct: 262 STRAYQIAFDLYETASQGFLDRV-----------LKRFQ---------QQDA-------- 293
Query: 310 NEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 369
+DE E KI IL G +++ L F HN +D ++++ IK
Sbjct: 294 -----------RDEKSME--------KIHSILKGHETVKAYLDFFVRHNHTDSVLMEEIK 334
Query: 370 QSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGH 429
+++ R + H+A + +N +M GTT D FLR NL+W+S+ATNW KF+A A LG+IH G
Sbjct: 335 ENI--RTASAHNALLISNGLMQYGTTCDDFLRNNLNWVSKATNWNKFNAVASLGLIHHGQ 392
Query: 430 LQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQ-FLRDSLRSTNVEV 488
++ PYLP+ G G + EGGA+ A GLIHA HG+ L L++ E
Sbjct: 393 ESSAMKVLEPYLPKESVEGFG--FKEGGAMLAYGLIHAKHGDATAMSTLAQWLKTAENEP 450
Query: 489 IQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA-GEM 547
++HGACLG G+A LG++ Y+ ++ VL D AV+GE+AGI+MGL+M G +++ E+
Sbjct: 451 VRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQEVFNEL 510
Query: 548 LTYAHETQHEKIIRGLALGIALTVYGREEEADTLI-EQMTRDQDPILRYGGMYALALAYS 606
Y +TQH+K RG+ G+A +G + +A+ I E + +P+LR G+ L++AY+
Sbjct: 511 KQYTVDTQHDKTQRGIRTGLACAAFGLQGDAEPYIKEAIGAKSNPMLRSTGICMLSMAYA 570
Query: 607 GTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYG 666
GT + +R+LL +D + DV+R A + +GFVL +P V++L+E +N HVRYG
Sbjct: 571 GTGSPDVVRRLLEKVATDPNLDVKRYATIGIGFVLSKDPSTCLSYVAMLTEHFNGHVRYG 630
Query: 667 AALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRR 726
AA+A+GI+CAGTG EAI+L+EP+ SD FVR+GAL+++A++M Q + +V FR+
Sbjct: 631 AAMALGIACAGTGNMEAIALIEPMISDKEGFVRKGALLSLALIMCQQTDYTCPKVNGFRK 690
Query: 727 QLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWY 786
QL K I +K+ED++ K GAI+A G+LD GG+N + + + K + ++VG+ F W+
Sbjct: 691 QLLKKIGEKNEDSLVKFGAIIAQGLLDIGGQNAAVTMQNSDKQPDMGSMVGMMCFLHGWF 750
Query: 787 WYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAA 846
W+ + +FI+L+ P+ L+ +N +LK+P +++ HA F YP K+
Sbjct: 751 WHSMHFFIALAAKPSCLVMMNENLKIPVLDYICHANSQKFAYPPRAESKKDKDVKKIETV 810
Query: 847 VLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEK----DGDSMQVDAPPEK 902
VLS + K A K AE+K++ +A A + ++A S++ + + M+VD P +
Sbjct: 811 VLSITGKKNASKKLIAEEKKRREAAASASSAAAAPSSSSTSGTAPAAEDEKMEVDQPGKS 870
Query: 903 KAEPEPSFEI-----LINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPE 957
K E P + L NPARV+PAQ + I + Y P+K G +++ D E E
Sbjct: 871 KKEKAPEKDTKPLHRLQNPARVIPAQRQLISISDARAYSPMKPLYKGGIIVADRVDKERE 930
Query: 958 VLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDE 991
+++ + +PA G+T + S + +++
Sbjct: 931 EKLVSEVVTQVNTPASSGNTENKPHSTFEININD 964
>sp|Q8SSH5|RPN2_ENCCU 26S proteasome regulatory subunit RPN2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN2 PE=1 SV=1
Length = 786
Score = 216 bits (550), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 151/493 (30%), Positives = 248/493 (50%), Gaps = 36/493 (7%)
Query: 336 KIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTT 395
++ ILSGE ++ FL N + L++I ++ H + AN++M+ GT+
Sbjct: 237 RVMSILSGEFKKKILGAFLLEKNLTSFKFLESIARTRT------HYLGL-ANSLMNLGTS 289
Query: 396 VDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSE 455
DT R N D +++ WAKFS A +G+IH + ++ YLP E
Sbjct: 290 NDTLYRNNADIFGQSSEWAKFSEVASIGMIHLFN-SNPYEILKNYLPSE------VSQKE 342
Query: 456 GGALYALGLIHA-NHGEGIKQFLRDSLRSTNVEV--IQHGACLGLGLAALGTADEDIYDD 512
GGAL ALGLI A E ++L L + + + +G CLGLGL +G+A+ +I +
Sbjct: 343 GGALMALGLIKAGTFSEEDTEYLLYFLDTEDTLTPELAYGVCLGLGLINMGSANREILNK 402
Query: 513 IKNVLYTDSAVAGEAAGISMGLLMVGTAS-EKAGEMLTYAHETQHEKIIRGLALGIALTV 571
+K + D + EA+ MG+L + + S E ++ T A ET+ E++ R + + +L +
Sbjct: 403 LKELSKVDRTLLVEASVYGMGMLGLNSWSVELLEDLRTIAGETEFERVKRAVGISFSLVL 462
Query: 572 YGREE-----------EADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHF 620
EE + I ++ D+D I+R G+ +L A+ GT I LL +
Sbjct: 463 MFSEEMFYDECNASNGDFKNYINELLYDKDSIMRANGVLSLGSAFVGTGRLGVISTLLPY 522
Query: 621 AVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL 680
++D DDV+R AV+A+G V + + + LSE++N VR A+ +G+ +GTG
Sbjct: 523 -INDGDDDVKRAAVIAIGLVCCDDRDLLVGTLEPLSENHNFFVRAAVAVVLGLFLSGTGD 581
Query: 681 SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKI---ILDKHE 737
++LE L D VRQ A I + + +Q N V ++R +EK+ I+DK E
Sbjct: 582 KVCTNILEALMYDTNSLVRQSACIGVGFITMQ---CNPELVPNYKRIIEKLNRLIVDKKE 638
Query: 738 DTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLS 797
++GA+L G+ + GGRN+ + + + + G +F +WYW+PLI +SL
Sbjct: 639 SGAVELGAVLGRGLSEGGGRNIVFSVRNMSGITSADRIAGAVLFLHYWYWHPLISMVSLC 698
Query: 798 FSPTALIGLNYDL 810
PT + N DL
Sbjct: 699 ALPTTVFCFNEDL 711
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn1 PE=1 SV=2
Length = 891
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 115/464 (24%), Positives = 200/464 (43%), Gaps = 52/464 (11%)
Query: 382 ATIYANAIMHAGTTVDTFL---RENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMA 438
A + NA+++AG + D + E W+ + SATA +G++ ++ G SL+
Sbjct: 370 ANTFVNALVNAGYSNDRLILVDDEKTSWIYKNKESGLISATASIGLLQLWNVDMGLSLLD 429
Query: 439 PYLPQGGAGGGGSPYSEGGALYALGLIHA---NHGEGIKQFLRDSLRSTNVEVIQHGACL 495
YL ++ GAL +G+ + N + L + L + +V+ ++ A L
Sbjct: 430 KYLY------SSEENTKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVK-LRASAIL 482
Query: 496 GLGLAALGTADEDIYDDIKNVLYTDSAVAGEA---AGISMGLLMVGT-----ASEKAGEM 547
GLGLA G ED+ D + ++ TD+ + A +S+GL+ VGT AS +
Sbjct: 483 GLGLAYSGANREDLLDMLSPIV-TDTDCPMQLSCLAALSLGLIFVGTCNGDVASTILQTL 541
Query: 548 LTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSG 607
+ Q+++ R +ALG+AL G+++ AD +E + + I R + +Y+G
Sbjct: 542 MEREESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQAEILVDICSYAG 601
Query: 608 TANNKAIRQLLHFAVSDVSDDVRRT-------AVLALGFVLYSE---PEQTPRIVSLLSE 657
T N I++LLH SDD + + A L + + E E R +
Sbjct: 602 TGNVLHIQKLLHICSEPPSDDAKESETTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMH 661
Query: 658 SYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEAN 717
P +R LA+G+ A L + D V A+ AM +V + A
Sbjct: 662 YGEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNA- 720
Query: 718 DSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTI-------RLLSKTKHD 770
R+ RQL H+++ + +A G+L G +T+ ++L +T
Sbjct: 721 --RLAQLLRQLASYY---HKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQTAFA 775
Query: 771 KITAVVGLSVFSQFW-----YWYPLIYFISLSFSPTALIGLNYD 809
+ VV + + + +W L+Y I+L+ P LI L D
Sbjct: 776 GLMTVVLAMLDANTFVLDTSHW--LLYAITLAIRPRMLITLGED 817
>sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpn-1 PE=3 SV=2
Length = 902
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 110/469 (23%), Positives = 194/469 (41%), Gaps = 60/469 (12%)
Query: 385 YANAIMHAGTTVDTFL---RENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYL 441
+ NA ++AG D + ++ W+ + + S A LG + ++ G + Y
Sbjct: 380 FVNAFVNAGFGSDKMMLVGKDKDSWVWKTKDEGMMSTVASLGTLLLWDVENGLDHVDKY- 438
Query: 442 PQGGAGGGGSPYSE-----GGALYALGLIHAN---HGEGIKQFLRD--SLRSTNVEVIQH 491
Y E GA A+G+++ N E L D L N +I+
Sbjct: 439 ----------TYLEEEQIQAGAYLAIGIMNTNVRTDSEPAMALLADPDKLAHKN-PLIRV 487
Query: 492 GACLGLGLAALGTADEDIYDDIKNVLY--TDSAVAGEAAGISMGLLMVGTASEKAGEML- 548
+GLGLA G+ E++ + N++ +S A ++ G++ VG+++ + E +
Sbjct: 488 ATIMGLGLAYAGSCKEELLSFLVNIISDPEESMQVSAMAALACGMIFVGSSNSEVSEAIV 547
Query: 549 -TYAHETQ----HEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALAL 603
T E ++K R LALG+ L +GR+E+ D ++E + + P+ + + A
Sbjct: 548 TTLLDEESGSRLNDKWSRFLALGLGLLYFGRQEQVDVILETLKAVEHPMAKPTAVLAEIC 607
Query: 604 AYSGTANNKAIRQLLHFAVSDVSDD--------VRRTAVLALGFVLYSE---PEQTPRIV 652
A++GT I++LLH + D ++ AVL +G + E E R
Sbjct: 608 AWAGTGAVLKIQELLHICNEHIEDGEEKKGEELLQAYAVLGIGLIAMGEDVGQEMVLRHF 667
Query: 653 SLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 712
L ++R LA+G+ + L + D + V A+ AM ++
Sbjct: 668 GHLMHYGEANIRRAVPLAMGLISPSNPQMKVYDTLSRYSHDNDNEVAINAIFAMGLLGAG 727
Query: 713 INEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTI-------RLLS 765
N A R+ RQL H D S +A G+L G +++ ++LS
Sbjct: 728 TNNA---RLAQLLRQLASYY---HRDQESLFMVRIAQGLLHMGKGTLSVSPFHTDRQVLS 781
Query: 766 KTKHDKITAV-VGLSVFSQFWY--WYPLIYFISLSFSPTALIGLNYDLK 811
+ AV V + QF + L+Y+I + P L+ L+ DLK
Sbjct: 782 NVATAGLLAVLVAMIDAKQFITSKSHYLLYWIVTAMHPRMLVTLDEDLK 830
>sp|Q9SIV2|RPN1A_ARATH 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis
thaliana GN=RPN1A PE=1 SV=2
Length = 891
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 108/479 (22%), Positives = 195/479 (40%), Gaps = 78/479 (16%)
Query: 382 ATIYANAIMHAGTTVDTFLRENLD--------WLSRATNWAKFSATAGLGVIHRGHLQQG 433
A + NA ++AG D + D WL + K SA A LG+I + G
Sbjct: 371 AATFVNAFVNAGFGQDKLMTVPSDSTTGSSGNWLFKNKEHGKTSAAASLGMIQLWDVDSG 430
Query: 434 RSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQ-------FLRDSLRSTNV 486
S + Y +P GAL +G+++ GIK L D + +
Sbjct: 431 LSQLDKYFHSND-----NPII-AGALLGVGIVNC----GIKNDCDPALALLGDYIDKEDS 480
Query: 487 EVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEA---AGISMGLLMVGTASEK 543
V + GA +GLG++ G+ ++ I + + +L D+ + A +S+G++ VG+ +E+
Sbjct: 481 SV-RIGAIMGLGISYAGSQNDQIRNKLSPIL-NDAKAPLDVIAFASLSLGMIYVGSCNEE 538
Query: 544 AGEMLTYAHETQHEKIIRGLALGIALTVYG----------REEEADTLIEQMTRDQDPIL 593
+ + +A + E LG ALT + ++E + E + I
Sbjct: 539 VAQSIIFALMDRSEA-----ELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIR 593
Query: 594 RYGGMYALALAYSGTANNKAIRQLL-----HFAVSDVSDDVRRTAVLALGFVLYSEP--- 645
+Y M L+ AY+GT N ++ LL H D+ + AVL L V SE
Sbjct: 594 KYCDMTLLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIH---QGPAVLGLAMVAMSEELGV 650
Query: 646 EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIA 705
+ R + + + ++R LA+G+ C + L L+ D V A+I+
Sbjct: 651 DMEIRSLERMLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIIS 710
Query: 706 MAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIR--- 762
+ ++ N A R+ R L ++D +A G++ G +T+
Sbjct: 711 LGLIGAGTNNA---RIAGMLRNLSSYY---YKDMSLLFCVRIAQGLVHMGKGLLTLSPFH 764
Query: 763 ----LLSKTKHDKITAVVGLS------VFSQFWYWYPLIYFISLSFSPTALIGLNYDLK 811
LLS T I ++ + ++ Y ++YF+ L+ P ++ ++ +LK
Sbjct: 765 SERFLLSPTALAGIVTLLHACLDMKPIILGKYHY---VLYFLVLAMQPRMMLTVDENLK 820
>sp|Q6XJG8|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis
thaliana GN=RPN1B PE=2 SV=1
Length = 891
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 109/479 (22%), Positives = 192/479 (40%), Gaps = 77/479 (16%)
Query: 381 SATIYANAIMHAGTTVDTFLRENLD--------WLSRATNWAKFSATAGLGVIHRGHLQQ 432
SAT + NA ++AG D + D WL + K SA A LG+I ++
Sbjct: 371 SAT-FVNAFVNAGFGQDKLMTVPSDSTSGSAGNWLFKNKEHGKTSAVASLGMIQLWDVET 429
Query: 433 GRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQ------FLRDSLRSTNV 486
G + Y +P GAL +G+++ GIK L
Sbjct: 430 GLGHLDKYFHSND-----NPVV-AGALLGVGIVNC----GIKNDCDPAFALLSGYIDNED 479
Query: 487 EVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSA---VAGEAAGISMGLLMVGTASEK 543
++ GA +GLG+A G+ ++ I + +L +A V AA +S+G++ VG+ +E+
Sbjct: 480 SSVRIGAIMGLGIAYAGSQNDQIKIRLSPILNDANAPLDVIAFAA-LSLGMIYVGSCNEE 538
Query: 544 AGEMLTYAHETQHEKIIRGLALGIALTVYG----------REEEADTLIEQMTRDQDPIL 593
+ + +A + E LG ALT + ++E + E + I
Sbjct: 539 VAQSIIFALMDRSEA-----ELGEALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIR 593
Query: 594 RYGGMYALALAYSGTANNKAIRQLL-----HFAVSDVSDDVRRTAVLALGFVLYSEP--- 645
+Y M L+ AY+GT N ++ LL H D+ + AV+ L V SE
Sbjct: 594 KYCDMTLLSCAYAGTGNVLKVQDLLAQCGEHLVKGDIH---QGPAVIGLAMVAMSEELGL 650
Query: 646 EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIA 705
+ R + + + ++R LA+G+ C + L L+ D V A+I+
Sbjct: 651 DMEIRSLERVLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMAAIIS 710
Query: 706 MAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIR--- 762
+ ++ N A R+ R L ++D +A G + G +T+
Sbjct: 711 LGLIGAGTNNA---RIAGMLRNLSSYY---YKDASLLFCVRIAQGFVHMGKGLLTLNPFH 764
Query: 763 ----LLSKTKHDKITAVVGLS------VFSQFWYWYPLIYFISLSFSPTALIGLNYDLK 811
LLS T I ++ + ++ Y ++YF+ L+ P ++ ++ LK
Sbjct: 765 SERLLLSPTALAGIVTLLHACLDMKSIILGKYHY---VLYFLVLAMQPRMMLTVDQSLK 820
>sp|P56701|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus
GN=PSMD2 PE=1 SV=2
Length = 908
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 26/255 (10%)
Query: 382 ATIYANAIMHAGTTVDTFLRENLD-WLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPY 440
A+ + N ++A D L ++ + WL + + SA A LG+I + G + + Y
Sbjct: 373 ASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKY 432
Query: 441 LPQGGAGGGGSPYSEGGALYALGLIHA---NHGEGIKQFLRDSLRSTNVEVIQHGACLGL 497
L Y + GAL A G++++ N + L D + N ++ G+ GL
Sbjct: 433 LYSS------EDYIKSGALLACGIVNSGVRNECDPALALLSDYVLH-NSNTMRLGSIFGL 485
Query: 498 GLAALGTADEDIYDDIKNVLYTDSAVAGEAAGIS---MGLLMVGTASEKAGEMLTYAHET 554
GLA G+ ED+ + V+ DS + E AG++ G++ VG+ + G++ + +T
Sbjct: 486 GLAYAGSNREDVLTLLLPVM-GDSKSSMEVAGVTALACGMIAVGSCN---GDVTSTILQT 541
Query: 555 QHEK--------IIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYS 606
EK R L LG+ L G+ E + ++ + +P + AY+
Sbjct: 542 IMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYA 601
Query: 607 GTANNKAIRQLLHFA 621
G+ N ++QLLH
Sbjct: 602 GSGNVLKVQQLLHIC 616
>sp|Q8VDM4|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus
GN=Psmd2 PE=1 SV=1
Length = 908
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 26/255 (10%)
Query: 382 ATIYANAIMHAGTTVDTFLRENLD-WLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPY 440
A+ + N ++A D L ++ + WL + + SA A LG+I + G + + Y
Sbjct: 373 ASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKY 432
Query: 441 LPQGGAGGGGSPYSEGGALYALGLIHA---NHGEGIKQFLRDSLRSTNVEVIQHGACLGL 497
L Y + GAL A G++++ N + L D + N ++ G+ GL
Sbjct: 433 LYSS------EDYIKSGALLACGIVNSGVRNECDPALALLSDYVLH-NSNTMRLGSIFGL 485
Query: 498 GLAALGTADEDIYDDIKNVLYTDSAVAGEAAGIS---MGLLMVGTASEKAGEMLTYAHET 554
GLA G+ ED+ + V+ DS + E AG++ G++ VG+ + G++ + +T
Sbjct: 486 GLAYAGSNREDVLTLLLPVM-GDSKSSMEVAGVTALACGMIAVGSCN---GDVTSTILQT 541
Query: 555 QHEK--------IIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYS 606
EK R L LG+ L G+ E + ++ + +P + AY+
Sbjct: 542 IMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYA 601
Query: 607 GTANNKAIRQLLHFA 621
G+ N ++QLLH
Sbjct: 602 GSGNVLKVQQLLHIC 616
>sp|Q4FZT9|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus
GN=Psmd2 PE=2 SV=1
Length = 908
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 26/255 (10%)
Query: 382 ATIYANAIMHAGTTVDTFLRENLD-WLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPY 440
A+ + N ++A D L ++ + WL + + SA A LG+I + G + + Y
Sbjct: 373 ASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKY 432
Query: 441 LPQGGAGGGGSPYSEGGALYALGLIHA---NHGEGIKQFLRDSLRSTNVEVIQHGACLGL 497
L Y + GAL A G++++ N + L D + N ++ G+ GL
Sbjct: 433 LYSS------EDYIKSGALLACGIVNSGVRNECDPALALLSDYVLH-NSNTMRLGSIFGL 485
Query: 498 GLAALGTADEDIYDDIKNVLYTDSAVAGEAAGIS---MGLLMVGTASEKAGEMLTYAHET 554
GLA G+ ED+ + V+ DS + E AG++ G++ VG+ + G++ + +T
Sbjct: 486 GLAYAGSNREDVLTLLLPVM-GDSKSSMEVAGVTALACGMIAVGSCN---GDVTSTILQT 541
Query: 555 QHEK--------IIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYS 606
EK R L LG+ L G+ E + ++ + +P + AY+
Sbjct: 542 IMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYA 601
Query: 607 GTANNKAIRQLLHFA 621
G+ N ++QLLH
Sbjct: 602 GSGNVLKVQQLLHIC 616
>sp|Q13200|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens
GN=PSMD2 PE=1 SV=3
Length = 908
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 26/255 (10%)
Query: 382 ATIYANAIMHAGTTVDTFLRENLD-WLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPY 440
A+ + N ++A D L ++ + WL + + SA A LG+I + G + + Y
Sbjct: 373 ASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKY 432
Query: 441 LPQGGAGGGGSPYSEGGALYALGLIHA---NHGEGIKQFLRDSLRSTNVEVIQHGACLGL 497
L Y + GAL A G++++ N + L D + N ++ G+ GL
Sbjct: 433 LYSS------EDYIKSGALLACGIVNSGVRNECDPALALLSDYVLH-NSNTMRLGSIFGL 485
Query: 498 GLAALGTADEDIYDDIKNVLYTDSAVAGEAAGIS---MGLLMVGTASEKAGEMLTYAHET 554
GLA G+ ED+ + V+ DS + E AG++ G++ VG+ + G++ + +T
Sbjct: 486 GLAYAGSNREDVLTLLLPVM-GDSKSSMEVAGVTALACGMIAVGSCN---GDVTSTILQT 541
Query: 555 QHEK--------IIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYS 606
EK R L LG+ L G+ E + ++ + +P + AY+
Sbjct: 542 IMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYA 601
Query: 607 GTANNKAIRQLLHFA 621
G+ N ++QLLH
Sbjct: 602 GSGNVLKVQQLLHIC 616
>sp|Q5R9I6|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii
GN=PSMD2 PE=2 SV=1
Length = 908
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 26/255 (10%)
Query: 382 ATIYANAIMHAGTTVDTFLRENLD-WLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPY 440
A+ + N ++A D L ++ + WL + + SA A LG+I + G + + Y
Sbjct: 373 ASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKY 432
Query: 441 LPQGGAGGGGSPYSEGGALYALGLIHA---NHGEGIKQFLRDSLRSTNVEVIQHGACLGL 497
L Y + GAL A G++++ N + L D + N ++ G+ GL
Sbjct: 433 LYSS------EDYIKSGALLACGIVNSGVRNECDPALALLSDYVLH-NSNTMRLGSIFGL 485
Query: 498 GLAALGTADEDIYDDIKNVLYTDSAVAGEAAGIS---MGLLMVGTASEKAGEMLTYAHET 554
GLA G+ ED+ + V+ DS + E AG++ G++ VG+ + G++ + +T
Sbjct: 486 GLAYAGSNREDVLTLLLPVM-GDSKSSMEVAGVTALACGMIAVGSCN---GDVTSTILQT 541
Query: 555 QHEK--------IIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYS 606
EK R L LG+ L G+ E + ++ + +P + AY+
Sbjct: 542 IMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYA 601
Query: 607 GTANNKAIRQLLHFA 621
G+ N ++QLLH
Sbjct: 602 GSGNVLKVQQLLHIC 616
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 150/365 (41%), Gaps = 32/365 (8%)
Query: 382 ATIYANAIMHAGTTVDTFL--RENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAP 439
A+ + NA ++AG D + E+ W + S A G++ + G + +
Sbjct: 375 ASSFVNAFVNAGFGKDKLMTAEEDTKWWFKNRELGILSTVASTGMVVLWDIDGGLTKIDK 434
Query: 440 YLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQ-------FLRDSLRSTNVEVIQHG 492
+L + GAL A+G++ + GI+ L + + S+N +
Sbjct: 435 FLYSQ------EKHCSNGALMAIGMLTS----GIRSEMDPALSLLAEHINSSNTGT-RIS 483
Query: 493 ACLGLGLAALGTADEDIYDDIKNVLYTDSAVAG--EAAGISMGLLMVGTASEKAGEM--- 547
A GLGLA GT +D+ + L D G+++GL+ +G+ + +
Sbjct: 484 AIFGLGLAYAGTQRQDLMSLLSPCLDDDKEKMEFIGIVGLALGLIFIGSCDPELSTLFVQ 543
Query: 548 -LTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYS 606
L E R L LG+ L G+++ A+ +E + + Y + A AY+
Sbjct: 544 TLIQRGTAASESHARFLHLGLGLLYLGKQDAAELALETLKAIEGKGGEYARLTVEACAYA 603
Query: 607 GTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE---PEQTPRIVSLLSESYNPHV 663
GT N ++ +LHF + AVL++ + E + R+ L + N H+
Sbjct: 604 GTGNVLKVQNMLHFCSDGQENPHHGLAVLSIALIAMGEELGSDMCLRMFDHLLQKGNVHI 663
Query: 664 RYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGT 723
+ LA+G+ + +L L+ D V QGA++++ ++ N A R+G
Sbjct: 664 KRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSLGLIGAGTNNA---RIGG 720
Query: 724 FRRQL 728
R L
Sbjct: 721 MLRAL 725
>sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN1 PE=1 SV=3
Length = 993
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 127/275 (46%), Gaps = 25/275 (9%)
Query: 359 KSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSA 418
KS L K++ S + ++ + A+ + N ++ G D + +N +W+ + SA
Sbjct: 359 KSHLDNSKSVFSSAGLDSAQQNLASSFVNGFLNLGYCNDKLIVDNDNWVYKTKGDGMTSA 418
Query: 419 TAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGL----IHANHGEGIK 474
A +G I++ +L G + YL P + GAL +G+ +H E
Sbjct: 419 VASIGSIYQWNLD-GLQQLDKYLYVD------EPEVKAGALLGIGISASGVHDGEVEPAL 471
Query: 475 QFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVL-YTDSAVAGEA-AGISM 532
L+D + + + + I A LGLG+A G+ ++++ + + TD + A A +++
Sbjct: 472 LLLQDYVTNPDTK-ISSAAILGLGIAFAGSKNDEVLGLLLPIAASTDLPIETAAMASLAL 530
Query: 533 GLLMVGTASEKAGEMLTYAHETQHEKI--------IRGLALGIALTVYGREEEADTLIEQ 584
+ VGT + G++ T + E+ +R LAL + + G+ E+ D ++E
Sbjct: 531 AHVFVGTCN---GDITTSIMDNFLERTAIELKTDWVRFLALALGILYMGQGEQVDDVLET 587
Query: 585 MTRDQDPILRYGGMYALALAYSGTANNKAIRQLLH 619
++ + P+ + + AY+GT + I+ LLH
Sbjct: 588 ISAIEHPMTSAIEVLVGSCAYTGTGDVLLIQDLLH 622
>sp|Q6BNN6|SPC25_DEBHA Probable kinetochore protein SPC25 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SPC25 PE=3 SV=2
Length = 231
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 12/141 (8%)
Query: 530 ISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQ 589
+ M L V + K +L E Q E I L+ + T E+ ++ L EQ+ +D
Sbjct: 83 LQMQQLKVDELARKQDSLLDEKDELQTE--IDNLSSQVQTTTDSLEKSSNNLAEQLRKDY 140
Query: 590 DPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSD-DVRRTAVLALGFVLY----SE 644
+L+Y L + G + K + F+ D +D D L +G L+ S
Sbjct: 141 PELLKYEQHLGLKIEVIGQDSLKFV-----FSNIDPNDLDKEVWCELLVGGELFKVGDSF 195
Query: 645 PEQTPRIVSLLSESYNPHVRY 665
P P I++LL +N H +
Sbjct: 196 PPLAPDIITLLENEFNHHREF 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,329,945
Number of Sequences: 539616
Number of extensions: 16091842
Number of successful extensions: 69261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 68275
Number of HSP's gapped (non-prelim): 767
length of query: 1003
length of database: 191,569,459
effective HSP length: 128
effective length of query: 875
effective length of database: 122,498,611
effective search space: 107186284625
effective search space used: 107186284625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)