Query 001859
Match_columns 1003
No_of_seqs 304 out of 795
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:00:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2062 26S proteasome regulat 100.0 7E-241 2E-245 2030.9 67.0 923 4-1003 1-928 (929)
2 COG5116 RPN2 26S proteasome re 100.0 2E-199 4E-204 1647.9 53.4 919 4-1003 1-925 (926)
3 KOG2005 26S proteasome regulat 100.0 3E-135 7E-140 1150.6 48.0 729 12-826 53-823 (878)
4 COG5110 RPN1 26S proteasome re 100.0 1E-112 2E-117 949.6 52.1 731 12-827 52-825 (881)
5 KOG2062 26S proteasome regulat 100.0 7.9E-43 1.7E-47 401.9 22.7 347 381-782 290-652 (929)
6 COG5116 RPN2 26S proteasome re 100.0 1.3E-36 2.7E-41 342.0 18.6 346 384-782 286-649 (926)
7 KOG2005 26S proteasome regulat 100.0 9.4E-35 2E-39 332.2 18.1 354 335-761 304-676 (878)
8 COG5110 RPN1 26S proteasome re 100.0 7.6E-30 1.6E-34 286.7 20.3 354 335-761 305-677 (881)
9 KOG1858 Anaphase-promoting com 99.6 7.6E-15 1.6E-19 182.8 21.3 398 409-827 814-1321(1496)
10 PRK09687 putative lyase; Provi 99.6 8.9E-13 1.9E-17 145.9 26.3 219 473-711 24-250 (280)
11 PRK09687 putative lyase; Provi 99.5 5.1E-13 1.1E-17 147.8 23.1 246 435-707 26-278 (280)
12 PRK13800 putative oxidoreducta 99.3 1.3E-10 2.8E-15 147.4 26.6 289 411-750 607-895 (897)
13 PRK13800 putative oxidoreducta 99.2 7.4E-10 1.6E-14 140.6 24.7 266 406-707 629-895 (897)
14 TIGR02270 conserved hypothetic 98.8 1.2E-06 2.6E-11 102.0 26.5 222 459-711 45-267 (410)
15 TIGR02270 conserved hypothetic 98.8 5.9E-07 1.3E-11 104.6 23.7 220 494-753 45-266 (410)
16 COG1413 FOG: HEAT repeat [Ener 98.8 1.3E-06 2.9E-11 98.6 24.6 249 472-753 43-303 (335)
17 COG1413 FOG: HEAT repeat [Ener 98.7 1.8E-06 3.9E-11 97.5 22.5 217 507-750 42-269 (335)
18 KOG0567 HEAT repeat-containing 98.6 6.7E-06 1.5E-10 88.8 21.1 224 457-713 55-282 (289)
19 KOG1858 Anaphase-promoting com 98.5 5.3E-07 1.1E-11 114.3 10.9 230 451-680 884-1248(1496)
20 PF13646 HEAT_2: HEAT repeats; 98.2 2.3E-06 4.9E-11 77.4 6.3 87 614-707 1-88 (88)
21 PF13646 HEAT_2: HEAT repeats; 98.1 1.6E-05 3.4E-10 71.9 8.3 88 578-672 1-88 (88)
22 PLN03200 cellulose synthase-in 98.0 0.00095 2.1E-08 89.7 26.2 314 431-757 403-767 (2102)
23 KOG0567 HEAT repeat-containing 97.9 0.00057 1.2E-08 74.3 18.0 236 404-674 38-278 (289)
24 TIGR02917 PEP_TPR_lipo putativ 97.9 0.16 3.5E-06 63.1 52.4 307 423-758 576-888 (899)
25 KOG0166 Karyopherin (importin) 97.8 0.0016 3.5E-08 77.2 20.0 238 474-714 111-396 (514)
26 PLN03200 cellulose synthase-in 97.6 0.0084 1.8E-07 81.0 26.1 287 414-711 462-811 (2102)
27 PF01851 PC_rep: Proteasome/cy 97.5 9.8E-05 2.1E-09 56.7 3.9 35 666-700 1-35 (35)
28 PF01602 Adaptin_N: Adaptin N 97.5 0.0082 1.8E-07 71.8 22.3 16 842-857 469-484 (526)
29 PF01851 PC_rep: Proteasome/cy 97.5 0.00014 3E-09 56.0 4.5 31 492-522 1-31 (35)
30 KOG2171 Karyopherin (importin) 97.3 0.4 8.6E-06 61.5 33.7 223 376-645 263-507 (1075)
31 TIGR02917 PEP_TPR_lipo putativ 97.3 0.91 2E-05 56.4 49.6 260 419-696 470-736 (899)
32 KOG1824 TATA-binding protein-i 97.3 0.0097 2.1E-07 73.7 18.3 206 473-711 819-1036(1233)
33 COG5240 SEC21 Vesicle coat com 97.1 0.015 3.3E-07 68.7 17.5 247 459-710 208-554 (898)
34 PF01602 Adaptin_N: Adaptin N 97.1 0.033 7.1E-07 66.7 21.0 257 451-713 92-371 (526)
35 COG5064 SRP1 Karyopherin (impo 96.9 0.027 5.9E-07 63.2 16.1 246 464-715 110-402 (526)
36 PRK11788 tetratricopeptide rep 96.8 0.52 1.1E-05 53.8 26.4 223 465-691 46-276 (389)
37 PTZ00429 beta-adaptin; Provisi 96.8 0.68 1.5E-05 58.5 28.8 270 450-732 117-414 (746)
38 PRK11788 tetratricopeptide rep 96.5 0.34 7.4E-06 55.3 22.0 290 425-732 46-349 (389)
39 KOG0166 Karyopherin (importin) 96.3 0.69 1.5E-05 55.6 23.3 244 510-757 111-396 (514)
40 KOG2023 Nuclear transport rece 96.3 0.058 1.3E-06 65.1 14.2 304 417-755 374-733 (885)
41 PTZ00429 beta-adaptin; Provisi 96.0 1.4 3E-05 55.9 25.2 119 554-677 79-209 (746)
42 smart00638 LPD_N Lipoprotein N 95.8 0.16 3.5E-06 62.1 15.9 167 571-748 352-539 (574)
43 PF13513 HEAT_EZ: HEAT-like re 95.8 0.0096 2.1E-07 49.6 3.7 48 661-708 1-54 (55)
44 KOG1078 Vesicle coat complex C 95.7 0.9 2E-05 56.3 21.1 77 657-733 476-560 (865)
45 PRK10049 pgaA outer membrane p 95.3 5.8 0.00012 50.6 27.3 348 383-758 53-442 (765)
46 PRK15174 Vi polysaccharide exp 95.2 8.9 0.00019 48.1 28.2 289 383-696 46-351 (656)
47 COG5096 Vesicle coat complex, 94.9 0.14 3.1E-06 63.8 11.1 129 579-712 58-196 (757)
48 smart00638 LPD_N Lipoprotein N 94.9 1.3 2.8E-05 54.3 19.4 19 628-646 495-513 (574)
49 PF12755 Vac14_Fab1_bd: Vacuol 94.6 0.055 1.2E-06 51.2 5.2 48 657-704 37-90 (97)
50 KOG2171 Karyopherin (importin) 94.5 1.2 2.6E-05 57.3 17.8 82 629-710 325-417 (1075)
51 PF01347 Vitellogenin_N: Lipop 94.5 0.33 7.1E-06 59.9 12.9 78 659-747 502-582 (618)
52 cd00020 ARM Armadillo/beta-cat 93.7 0.48 1E-05 44.3 9.6 95 613-709 8-118 (120)
53 KOG4224 Armadillo repeat prote 93.5 0.35 7.5E-06 55.2 9.4 92 625-717 179-286 (550)
54 KOG1824 TATA-binding protein-i 93.4 31 0.00068 44.4 35.3 265 414-734 835-1116(1233)
55 PF12755 Vac14_Fab1_bd: Vacuol 93.3 0.28 6E-06 46.5 7.3 83 663-747 2-90 (97)
56 PRK15174 Vi polysaccharide exp 93.3 29 0.00063 43.6 29.0 273 405-696 101-385 (656)
57 PLN03081 pentatricopeptide (PP 93.2 30 0.00065 43.6 32.7 219 423-658 334-557 (697)
58 KOG1062 Vesicle coat complex A 93.2 14 0.0003 46.6 22.9 268 472-755 103-413 (866)
59 COG5064 SRP1 Karyopherin (impo 92.9 5.8 0.00012 45.4 17.6 266 412-732 129-442 (526)
60 KOG0915 Uncharacterized conser 92.6 1.2 2.5E-05 58.8 13.3 179 556-755 874-1069(1702)
61 KOG1077 Vesicle coat complex A 92.6 35 0.00076 42.7 24.9 75 634-708 313-395 (938)
62 TIGR02521 type_IV_pilW type IV 92.6 7.8 0.00017 39.4 17.4 61 454-517 29-92 (234)
63 COG5096 Vesicle coat complex, 92.4 0.98 2.1E-05 56.7 12.1 158 574-755 36-196 (757)
64 cd00020 ARM Armadillo/beta-cat 92.4 0.42 9.1E-06 44.6 7.2 102 647-752 8-118 (120)
65 KOG0213 Splicing factor 3b, su 92.3 39 0.00084 42.5 30.1 164 455-621 900-1083(1172)
66 KOG1943 Beta-tubulin folding c 92.2 8.9 0.00019 49.5 19.9 255 472-760 341-617 (1133)
67 PF01347 Vitellogenin_N: Lipop 92.2 1.9 4.1E-05 53.3 14.4 80 622-704 499-582 (618)
68 KOG4224 Armadillo repeat prote 91.7 5.5 0.00012 45.9 15.7 282 451-765 183-505 (550)
69 TIGR00990 3a0801s09 mitochondr 91.1 48 0.001 41.1 25.5 26 218-243 163-188 (615)
70 PF05004 IFRD: Interferon-rela 91.1 6 0.00013 45.1 15.7 48 627-675 200-256 (309)
71 PRK12370 invasion protein regu 90.8 27 0.00059 42.8 22.2 77 508-586 322-399 (553)
72 KOG1060 Vesicle coat complex A 90.8 12 0.00026 47.1 18.3 85 450-535 120-207 (968)
73 PLN03218 maturation of RBCL 1; 90.7 73 0.0016 42.5 38.6 190 422-623 587-782 (1060)
74 PLN03077 Protein ECB2; Provisi 90.6 64 0.0014 41.7 35.9 44 201-244 271-317 (857)
75 PRK10049 pgaA outer membrane p 90.1 67 0.0014 41.2 29.9 338 384-745 88-467 (765)
76 KOG2259 Uncharacterized conser 89.8 3.3 7.1E-05 50.8 12.5 332 333-731 138-495 (823)
77 PRK12370 invasion protein regu 89.5 11 0.00024 46.1 17.4 215 471-698 321-540 (553)
78 KOG1060 Vesicle coat complex A 89.3 8.1 0.00017 48.4 15.4 110 546-677 94-210 (968)
79 PRK11447 cellulose synthase su 89.1 97 0.0021 41.7 50.6 179 68-260 116-313 (1157)
80 PF12717 Cnd1: non-SMC mitotic 88.9 2.9 6.3E-05 43.5 10.2 87 626-712 1-93 (178)
81 PF10508 Proteasom_PSMB: Prote 88.7 66 0.0014 39.2 25.7 115 613-727 244-382 (503)
82 PRK09782 bacteriophage N4 rece 88.1 1.1E+02 0.0023 40.8 45.1 200 529-744 480-682 (987)
83 TIGR02521 type_IV_pilW type IV 88.1 24 0.00052 35.8 16.3 152 423-585 40-195 (234)
84 KOG1059 Vesicle coat complex A 87.7 43 0.00093 42.0 19.9 54 648-703 300-357 (877)
85 PF12717 Cnd1: non-SMC mitotic 87.6 2.3 4.9E-05 44.3 8.5 88 660-752 1-90 (178)
86 KOG1062 Vesicle coat complex A 87.3 27 0.00058 44.1 18.2 238 506-753 101-379 (866)
87 PF12348 CLASP_N: CLASP N term 87.3 5.3 0.00011 42.6 11.3 97 615-712 97-207 (228)
88 TIGR00540 hemY_coli hemY prote 86.9 58 0.0013 38.3 20.6 280 419-714 89-384 (409)
89 PLN03081 pentatricopeptide (PP 86.6 1E+02 0.0022 39.0 31.9 256 420-691 296-555 (697)
90 PF13513 HEAT_EZ: HEAT-like re 86.0 0.86 1.9E-05 37.8 3.5 54 697-752 2-55 (55)
91 COG5181 HSH155 U2 snRNP splice 85.7 6.8 0.00015 47.8 11.7 165 454-622 704-889 (975)
92 PF02985 HEAT: HEAT repeat; I 85.4 1.1 2.3E-05 33.3 3.3 27 684-710 2-28 (31)
93 KOG2025 Chromosome condensatio 84.9 43 0.00094 41.9 18.0 152 551-707 91-255 (892)
94 KOG1242 Protein containing ada 84.5 1.1E+02 0.0025 37.7 21.5 255 472-759 174-449 (569)
95 cd06561 AlkD_like A new struct 84.5 18 0.0004 37.6 13.4 66 650-715 108-174 (197)
96 TIGR00990 3a0801s09 mitochondr 84.4 1.1E+02 0.0023 38.0 22.2 223 458-691 333-569 (615)
97 KOG0915 Uncharacterized conser 84.3 8.5 0.00019 51.3 12.5 225 454-702 835-1101(1702)
98 TIGR00540 hemY_coli hemY prote 84.1 95 0.0021 36.5 24.1 260 384-653 87-359 (409)
99 KOG0213 Splicing factor 3b, su 83.9 1.3E+02 0.0029 38.1 44.2 226 16-257 372-664 (1172)
100 PF12348 CLASP_N: CLASP N term 83.6 13 0.00029 39.6 12.2 124 627-753 67-205 (228)
101 COG5181 HSH155 U2 snRNP splice 83.1 1.3E+02 0.0029 37.4 36.4 151 546-701 734-902 (975)
102 PRK06743 flagellar motor prote 82.8 40 0.00087 37.6 15.6 146 573-733 85-243 (254)
103 PF06685 DUF1186: Protein of u 81.0 58 0.0013 36.2 15.9 94 632-732 61-163 (249)
104 PF08713 DNA_alkylation: DNA a 80.0 43 0.00092 35.3 14.3 134 579-715 53-188 (213)
105 smart00567 EZ_HEAT E-Z type HE 79.7 2.2 4.7E-05 31.2 3.1 29 662-694 2-30 (30)
106 KOG1943 Beta-tubulin folding c 79.4 2.2E+02 0.0048 37.6 23.3 85 449-533 352-453 (1133)
107 PRK11447 cellulose synthase su 79.2 2.4E+02 0.0053 38.0 46.5 119 421-549 276-409 (1157)
108 PF04826 Arm_2: Armadillo-like 79.2 7.5 0.00016 43.2 8.5 64 647-710 13-82 (254)
109 PF03130 HEAT_PBS: PBS lyase H 78.7 1.2 2.7E-05 32.1 1.5 25 663-691 1-25 (27)
110 PF10508 Proteasom_PSMB: Prote 78.2 29 0.00063 42.3 13.8 128 621-752 127-270 (503)
111 PLN03077 Protein ECB2; Provisi 78.0 2.2E+02 0.0048 36.8 39.0 95 139-242 155-249 (857)
112 PF05004 IFRD: Interferon-rela 76.1 55 0.0012 37.4 14.5 57 695-753 199-256 (309)
113 PLN03218 maturation of RBCL 1; 75.6 3E+02 0.0064 37.0 36.0 274 420-706 513-798 (1060)
114 COG3118 Thioredoxin domain-con 75.3 1.5E+02 0.0033 33.8 17.1 125 598-732 171-303 (304)
115 PF04826 Arm_2: Armadillo-like 75.1 37 0.00081 37.7 12.5 101 609-709 9-122 (254)
116 COG5098 Chromosome condensatio 73.1 6.1 0.00013 48.8 6.0 118 625-749 908-1032(1128)
117 KOG0413 Uncharacterized conser 72.5 5.8 0.00013 50.5 5.7 85 627-713 945-1037(1529)
118 KOG2023 Nuclear transport rece 72.1 19 0.00041 44.6 9.7 160 623-796 403-588 (885)
119 cd07064 AlkD_like_1 A new stru 72.0 1.5E+02 0.0032 31.9 19.2 134 576-712 45-180 (208)
120 COG5240 SEC21 Vesicle coat com 70.9 1.2E+02 0.0025 37.6 15.5 191 471-674 302-553 (898)
121 KOG0211 Protein phosphatase 2A 70.6 25 0.00053 44.9 10.8 100 612-712 557-665 (759)
122 KOG0414 Chromosome condensatio 70.3 12 0.00026 48.8 8.0 103 626-732 936-1044(1251)
123 KOG1059 Vesicle coat complex A 70.3 3.1E+02 0.0067 35.0 22.9 62 685-752 302-364 (877)
124 PF02985 HEAT: HEAT repeat; I 69.9 6.4 0.00014 29.1 3.5 22 654-675 7-28 (31)
125 KOG0211 Protein phosphatase 2A 69.9 26 0.00056 44.7 10.7 123 627-754 532-664 (759)
126 COG5218 YCG1 Chromosome conden 69.8 1.7E+02 0.0037 36.3 16.6 153 550-708 96-263 (885)
127 TIGR03302 OM_YfiO outer membra 68.7 1.6E+02 0.0035 31.1 15.6 88 451-538 28-119 (235)
128 PRK10747 putative protoheme IX 68.5 2.4E+02 0.0053 33.0 23.5 30 628-657 262-291 (398)
129 PF09976 TPR_21: Tetratricopep 67.5 87 0.0019 31.0 12.2 108 572-680 24-133 (145)
130 PRK06926 flagellar motor prote 67.0 1.7E+02 0.0036 33.1 15.3 146 573-733 93-251 (271)
131 PF12719 Cnd3: Nuclear condens 65.3 88 0.0019 35.3 13.0 100 614-713 28-145 (298)
132 cd06561 AlkD_like A new struct 65.1 1.7E+02 0.0038 30.2 14.4 22 580-601 108-129 (197)
133 PRK08124 flagellar motor prote 64.7 2.4E+02 0.0052 31.6 17.0 151 568-733 84-247 (263)
134 PF03130 HEAT_PBS: PBS lyase H 64.5 5.6 0.00012 28.7 2.1 25 629-655 1-25 (27)
135 KOG1061 Vesicle coat complex A 62.7 1E+02 0.0023 39.0 13.6 91 624-715 97-193 (734)
136 PF13429 TPR_15: Tetratricopep 61.3 51 0.0011 36.3 10.0 47 602-648 221-267 (280)
137 TIGR03302 OM_YfiO outer membra 60.1 2E+02 0.0044 30.4 14.2 62 488-549 30-94 (235)
138 PRK09109 motC flagellar motor 59.0 1.7E+02 0.0037 32.4 13.5 150 568-732 83-245 (246)
139 KOG4653 Uncharacterized conser 58.3 3.2E+02 0.0069 35.5 16.6 64 451-516 740-810 (982)
140 PF05918 API5: Apoptosis inhib 58.3 80 0.0017 39.0 11.6 97 609-706 56-157 (556)
141 KOG2025 Chromosome condensatio 57.4 4.5E+02 0.0098 33.6 17.4 55 616-671 233-289 (892)
142 KOG0414 Chromosome condensatio 57.2 58 0.0013 43.0 10.4 86 589-674 935-1025(1251)
143 PRK08456 flagellar motor prote 56.6 3.2E+02 0.007 30.5 15.6 158 561-733 76-246 (257)
144 PLN03098 LPA1 LOW PSII ACCUMUL 56.3 99 0.0021 37.2 11.6 114 648-780 182-308 (453)
145 KOG2076 RNA polymerase III tra 56.2 1.2E+02 0.0026 39.2 12.7 111 133-243 277-405 (895)
146 KOG1061 Vesicle coat complex A 56.0 2.2E+02 0.0048 36.3 14.8 133 546-680 53-193 (734)
147 KOG1058 Vesicle coat complex C 55.3 5.1E+02 0.011 33.4 17.4 45 472-517 134-180 (948)
148 KOG1125 TPR repeat-containing 54.0 38 0.00083 41.4 7.8 184 459-655 322-525 (579)
149 KOG3616 Selective LIM binding 53.9 1.3E+02 0.0027 38.2 11.9 87 137-229 1080-1182(1636)
150 PRK10370 formate-dependent nit 53.7 1.7E+02 0.0037 31.0 12.1 84 627-713 71-157 (198)
151 PF08713 DNA_alkylation: DNA a 53.0 94 0.002 32.7 10.0 22 578-599 121-142 (213)
152 PF13429 TPR_15: Tetratricopep 52.7 45 0.00097 36.7 7.8 122 571-697 122-248 (280)
153 PRK14574 hmsH outer membrane p 52.3 6.7E+02 0.015 32.8 31.2 160 495-658 331-513 (822)
154 KOG2160 Armadillo/beta-catenin 51.8 89 0.0019 36.3 10.0 94 655-752 132-238 (342)
155 PF04053 Coatomer_WDAD: Coatom 50.4 1.1E+02 0.0023 37.0 10.9 110 139-262 298-417 (443)
156 PF12688 TPR_5: Tetratrico pep 49.0 1.4E+02 0.0031 29.3 9.8 80 470-549 17-100 (120)
157 KOG1125 TPR repeat-containing 48.8 30 0.00065 42.2 5.9 126 22-162 367-524 (579)
158 KOG1240 Protein kinase contain 47.9 1.1E+02 0.0025 40.6 10.9 233 432-676 458-725 (1431)
159 cd05804 StaR_like StaR_like; a 47.6 4.5E+02 0.0098 29.5 22.7 89 565-655 120-212 (355)
160 KOG2002 TPR-containing nuclear 46.7 6.2E+02 0.013 33.5 16.8 213 471-692 181-408 (1018)
161 KOG1517 Guanine nucleotide bin 46.5 68 0.0015 42.0 8.5 26 689-714 710-735 (1387)
162 PF13251 DUF4042: Domain of un 46.5 2.4E+02 0.0051 30.0 11.5 130 614-753 41-173 (182)
163 KOG1240 Protein kinase contain 45.0 9.7E+02 0.021 32.6 18.6 129 614-745 579-716 (1431)
164 KOG2259 Uncharacterized conser 43.1 83 0.0018 39.3 8.3 86 661-753 387-474 (823)
165 PF11838 ERAP1_C: ERAP1-like C 43.0 5.1E+02 0.011 28.8 16.9 46 471-516 18-66 (324)
166 KOG1242 Protein containing ada 42.6 7.8E+02 0.017 30.8 18.7 107 623-732 226-342 (569)
167 COG2766 PrkA Putative Ser prot 42.5 3E+02 0.0064 34.3 12.6 206 9-240 367-591 (649)
168 KOG3617 WD40 and TPR repeat-co 42.5 1.3E+02 0.0029 38.6 9.9 96 137-235 1081-1178(1416)
169 PF12719 Cnd3: Nuclear condens 42.3 5.5E+02 0.012 28.9 16.4 96 478-574 33-145 (298)
170 KOG0212 Uncharacterized conser 42.3 3.1E+02 0.0067 34.1 12.6 150 588-737 54-222 (675)
171 PRK11189 lipoprotein NlpI; Pro 41.5 5.5E+02 0.012 28.8 23.1 228 471-710 43-284 (296)
172 PRK09782 bacteriophage N4 rece 41.4 1E+03 0.022 31.9 44.7 226 455-695 476-709 (987)
173 KOG1822 Uncharacterized conser 40.5 90 0.002 43.2 8.7 87 626-712 889-989 (2067)
174 PF12688 TPR_5: Tetratrico pep 39.9 2.2E+02 0.0047 28.1 9.4 53 571-623 13-66 (120)
175 PRK04841 transcriptional regul 37.0 1E+03 0.023 30.7 22.5 87 425-514 463-555 (903)
176 PRK11189 lipoprotein NlpI; Pro 35.9 6.7E+02 0.014 28.1 22.9 231 507-752 43-283 (296)
177 PF01122 Cobalamin_bind: Eukar 35.7 3.5E+02 0.0075 31.5 11.5 145 599-744 53-235 (326)
178 PF08167 RIX1: rRNA processing 35.4 4.5E+02 0.0096 27.1 11.4 30 612-641 67-96 (165)
179 PF09384 UTP15_C: UTP15 C term 35.1 2.2E+02 0.0048 29.0 9.0 32 141-172 23-55 (148)
180 KOG1517 Guanine nucleotide bin 34.5 54 0.0012 42.8 5.1 33 680-712 640-672 (1387)
181 smart00567 EZ_HEAT E-Z type HE 34.3 37 0.00081 24.6 2.4 25 629-655 3-27 (30)
182 KOG0212 Uncharacterized conser 33.7 1E+02 0.0022 38.0 7.0 123 629-753 16-153 (675)
183 cd05804 StaR_like StaR_like; a 33.4 7.3E+02 0.016 27.8 24.7 164 455-622 44-213 (355)
184 PF11838 ERAP1_C: ERAP1-like C 33.3 7.1E+02 0.015 27.7 21.7 62 590-657 168-229 (324)
185 TIGR02552 LcrH_SycD type III s 33.3 2.7E+02 0.0059 26.4 9.0 14 601-614 91-104 (135)
186 KOG3081 Vesicle coat complex C 33.1 7.8E+02 0.017 28.1 13.1 164 46-242 92-292 (299)
187 KOG2032 Uncharacterized conser 32.8 3.2E+02 0.007 33.4 10.8 105 623-757 268-376 (533)
188 PF09976 TPR_21: Tetratricopep 32.8 4.9E+02 0.011 25.6 13.0 88 526-616 48-139 (145)
189 PF11701 UNC45-central: Myosin 31.8 1.1E+02 0.0025 31.3 6.3 96 613-708 43-156 (157)
190 PF12397 U3snoRNP10: U3 small 31.7 3.6E+02 0.0078 26.0 9.5 65 649-713 9-76 (121)
191 TIGR02552 LcrH_SycD type III s 31.6 4.4E+02 0.0096 25.0 10.2 14 566-579 92-105 (135)
192 PF11698 V-ATPase_H_C: V-ATPas 31.6 52 0.0011 32.6 3.6 84 602-712 33-116 (119)
193 KOG4653 Uncharacterized conser 31.3 1E+03 0.022 31.2 15.2 62 648-709 890-962 (982)
194 PRK10370 formate-dependent nit 31.3 6.5E+02 0.014 26.6 12.7 7 604-610 153-159 (198)
195 COG5098 Chromosome condensatio 31.1 4.2E+02 0.0092 33.8 11.6 70 28-100 28-103 (1128)
196 PF10193 Telomere_reg-2: Telom 30.7 77 0.0017 31.0 4.6 61 12-74 8-80 (114)
197 TIGR02795 tol_pal_ybgF tol-pal 30.2 1.9E+02 0.0042 26.3 7.2 48 667-714 41-90 (119)
198 PF07539 DRIM: Down-regulated 29.1 67 0.0015 32.6 4.0 44 11-59 21-66 (141)
199 PF10363 DUF2435: Protein of u 28.6 2.2E+02 0.0049 26.8 7.1 35 681-715 42-76 (92)
200 KOG1241 Karyopherin (importin) 28.3 1.4E+03 0.031 29.6 21.9 263 486-753 341-664 (859)
201 PF12460 MMS19_C: RNAPII trans 28.2 1.1E+03 0.023 28.0 17.0 68 647-715 324-398 (415)
202 PF00514 Arm: Armadillo/beta-c 28.2 70 0.0015 24.8 3.2 27 648-675 14-40 (41)
203 PRK15179 Vi polysaccharide bio 28.1 7E+02 0.015 32.0 13.5 119 463-584 95-213 (694)
204 PF04388 Hamartin: Hamartin pr 28.0 2.6E+02 0.0056 35.6 9.7 90 137-242 39-136 (668)
205 KOG1822 Uncharacterized conser 27.9 2E+03 0.044 31.3 19.3 156 556-711 889-1069(2067)
206 KOG3364 Membrane protein invol 27.7 72 0.0016 32.6 3.8 45 41-87 50-94 (149)
207 PRK10747 putative protoheme IX 27.7 1E+03 0.023 27.8 18.4 247 490-757 83-342 (398)
208 KOG1078 Vesicle coat complex C 27.6 1.5E+03 0.032 29.6 21.0 118 611-734 243-365 (865)
209 TIGR02795 tol_pal_ybgF tol-pal 26.6 3.9E+02 0.0084 24.3 8.6 76 468-543 16-93 (119)
210 KOG1820 Microtubule-associated 26.5 4.5E+02 0.0098 34.3 11.4 67 647-713 371-445 (815)
211 PF04733 Coatomer_E: Coatomer 26.3 9.8E+02 0.021 27.0 14.9 17 571-587 143-159 (290)
212 KOG1997 PH domain-containing p 25.9 1.6E+03 0.034 31.3 16.1 192 17-240 901-1115(1518)
213 PF04733 Coatomer_E: Coatomer 25.9 1E+03 0.022 27.0 17.1 157 418-587 106-264 (290)
214 smart00299 CLH Clathrin heavy 25.4 6.3E+02 0.014 24.5 10.2 37 202-240 84-121 (140)
215 KOG1058 Vesicle coat complex C 25.3 4.5E+02 0.0097 33.8 10.6 285 476-782 103-420 (948)
216 PF04053 Coatomer_WDAD: Coatom 25.1 3.1E+02 0.0068 33.1 9.3 79 151-241 349-428 (443)
217 PF11768 DUF3312: Protein of u 24.7 5.1E+02 0.011 32.1 10.8 23 141-163 413-435 (545)
218 PF14668 RICTOR_V: Rapamycin-i 22.2 1.3E+02 0.0028 27.3 4.1 57 457-513 6-69 (73)
219 TIGR03504 FimV_Cterm FimV C-te 22.2 1.4E+02 0.0031 24.4 3.9 26 219-244 3-28 (44)
220 PF07575 Nucleopor_Nup85: Nup8 22.0 82 0.0018 38.9 3.8 66 44-117 406-471 (566)
221 PRK15179 Vi polysaccharide bio 21.8 1.6E+03 0.035 28.8 15.1 91 419-517 91-181 (694)
222 PF11698 V-ATPase_H_C: V-ATPas 21.5 95 0.0021 30.8 3.3 30 11-40 90-119 (119)
223 PRK11115 transcriptional regul 20.6 8.1E+02 0.018 26.2 10.7 101 12-116 39-141 (236)
224 KOG1126 DNA-binding cell divis 20.0 6.9E+02 0.015 31.5 10.7 115 528-646 491-608 (638)
No 1
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-241 Score=2030.88 Aligned_cols=923 Identities=64% Similarity=1.015 Sum_probs=864.1
Q ss_pred cccccHHHHHhhccCCChhHHHHHHHHHHHHHHhhhhHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCchhH
Q 001859 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDS 83 (1003)
Q Consensus 4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~es 83 (1003)
|++|||+|+++||+|+.++|+.+||.+++++||++|+||++++++||.||||.+|+ +|++||+++||||||||+|++|
T Consensus 1 ~~itsAa~lialL~e~~~~lk~~Al~~in~vVd~~WpEIsd~l~~IE~lyed~~F~--er~~AaL~~SKVyy~Lgeye~A 78 (929)
T KOG2062|consen 1 MMITSAAGLIALLREPEPSLKVHALFKINNVVDQFWPEISDSLPKIESLYEDETFP--ERQLAALLASKVYYYLGEYEDA 78 (929)
T ss_pred CcccchHHHHHHHhCCchHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHhccCCCc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Q 001859 84 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECR 163 (1003)
Q Consensus 84 L~yaL~ag~~fd~~~~~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~~~~~~~~~~~~AigialE~~ 163 (1003)
|+|||+||+.||+++.++|++||+++|||+|++.+.+.++.+++...||+||++||+|||++|+.+|+|++|||||+|++
T Consensus 79 l~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~ 158 (929)
T KOG2062|consen 79 LEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETR 158 (929)
T ss_pred HHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhh
Confidence 99999999999999999999999999999999999988876655567999999999999999999999999999999999
Q ss_pred chHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001859 164 RLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 243 (1003)
Q Consensus 164 rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Lnd~~~v~~il~~L~~ 243 (1003)
|||+|++.+-++++...+|.|+++++++++++++||++||+++++.|+++++|||+++|||+++|||++.|+++|++|++
T Consensus 159 rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 159 RLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred hHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 99999997777799999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccCCccHHHHhhhhhccccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCC
Q 001859 244 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE 323 (1003)
Q Consensus 244 ~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1003)
+++.++||||||||+++++|+||..|.+.|+.+. ..++
T Consensus 239 ---e~~~llayQIAFDL~esasQefL~~v~~~l~~d~---------------------~~de------------------ 276 (929)
T KOG2062|consen 239 ---EDDLLLAYQIAFDLYESASQEFLDSVLDRLPADD---------------------ARDE------------------ 276 (929)
T ss_pred ---cchhhhHHHHHHHHhhccCHHHHHHHHHHccccc---------------------cccc------------------
Confidence 5779999999999999999999999999887520 0010
Q ss_pred ChhhHHHHHHHHHHhhccCCCchhHhhHHHHhhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchh
Q 001859 324 DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLREN 403 (1003)
Q Consensus 324 ~~~~~~~~~~l~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~k~~ld~r~s~~~~A~~~~nafmnaGt~~D~flr~n 403 (1003)
..+.++..||||+.++++|.+||.++|++|+++|+.+|+++ |+|++|+|++++|||||+|||+|+|+|+|
T Consensus 277 --------~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~--r~sv~H~A~~iAN~fMh~GTT~D~FlR~N 346 (929)
T KOG2062|consen 277 --------KPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESV--RNSVCHTATLIANAFMHAGTTSDTFLRNN 346 (929)
T ss_pred --------ChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHH--HHhhhhHHHHHHHHHHhcCCcchHHHHhc
Confidence 13578999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hhhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhccc
Q 001859 404 LDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS 483 (1003)
Q Consensus 404 l~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~ 483 (1003)
++|++|++||+||+||||||+||+||.++++++|.+|||+.+ ..++.|++|||+|||||||+||++.+.++|.++|++
T Consensus 347 L~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~--~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~ 424 (929)
T KOG2062|consen 347 LDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEA--GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT 424 (929)
T ss_pred hhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccC--CCCCCccccchhhhhhccccCcCccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999852 456899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHH
Q 001859 484 TNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRG 562 (1003)
Q Consensus 484 ~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~ 562 (1003)
++++++|||+|||||+++|||.|+++|+.|+.+|+.|+++.+|+|++||||+|+||.|.+++ +|++|+++||||+|.|+
T Consensus 425 ~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RG 504 (929)
T KOG2062|consen 425 AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRG 504 (929)
T ss_pred ccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC
Q 001859 563 LALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY 642 (1003)
Q Consensus 563 ~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~ 642 (1003)
+++|++|+.|||++.++.+|+.|..++||++||+|+|+++|||+||||+.+|++|||++++|++|||||+||++||||++
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHH
Q 001859 643 SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG 722 (1003)
Q Consensus 643 g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva 722 (1003)
++|++|++++++|+++||||||||+|+|||++|||||+.++|++|+||++|+++||||+|+||+|||++|+++..|||++
T Consensus 585 ~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHHHhHhHHHHHHHHhhccCCcE
Q 001859 723 TFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTA 802 (1003)
Q Consensus 723 ~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~a~vGll~f~q~~yw~pl~~~lsla~~P~~ 802 (1003)
.|+++|.++|.|||+|.+++|||++||||+++||||+||++++++|+.++.++|||++|+||||||||.||+||||+||+
T Consensus 665 ~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~WyWfPL~~flSLaf~PT~ 744 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYWYWFPLIHFLSLAFTPTT 744 (929)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCeEEEeeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC
Q 001859 803 LIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGK 882 (1003)
Q Consensus 803 li~ld~~l~~p~~~~~~~~~~~~f~yp~~~~~~~~~~~~k~~tavLS~t~k~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1003)
+||+|+||++|+|+++||+||++|+||||.++++.|+++||+|||||||+|+|+|+|+.++||+..++ ++ +..
T Consensus 745 vigln~dLk~Pk~e~~s~ak~~~faYP~p~e~~~~k~~~Kv~TaVLS~t~kakar~k~~~~ek~~~~~---~~----~~~ 817 (929)
T KOG2062|consen 745 VIGLNEDLKIPKFEYISHAKPSLFAYPPPDEVKKAKEVEKVATAVLSTTAKAKARAKKEAKEKEPNEE---EG----KAH 817 (929)
T ss_pred EEEeccccCCcceeeeccCChhhccCCCccccchhhhhhccchhhhhhhhhhhhhhhhhhhhcccchh---hh----ccc
Confidence 99999999999999999999999999999999999999999999999999999999887766522211 00 011
Q ss_pred CCCCCccCCCCCCCCC----CCCCCCCCCCCcccccCCccccccccceeeecCCCCceecccCCCcEEEEecCCCCCccc
Q 001859 883 GKSSNEKDGDSMQVDA----PPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEV 958 (1003)
Q Consensus 883 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~~~~gii~l~d~~p~e~~~ 958 (1003)
++...+++.+++..++ ++.+|++.||++++|+||+||+|+|+|||+|++++||+|||..+||||||+|+.|++|++
T Consensus 818 ~k~~~~ke~~~~~iDe~~~~~~~kKkKeep~~~~l~NpaRV~paQ~~~is~~~~~ry~P~k~~~gGiivl~d~~~~~~e~ 897 (929)
T KOG2062|consen 818 KKRETEKETEKMGIDEPAELEEVKKKKEEPKFEILDNPARVVPAQLKYISFIDDSRYVPVKLAIGGIVVLRDREPHEPED 897 (929)
T ss_pred cccchhhcccccccCcHHHHHHhhhcccCCchHhhcChhhcchhhcceeeeccCCceeeEeecCCcEEEEeccCCccchH
Confidence 1111122222222111 134555669999999999999999999999999999999999899999999999999999
Q ss_pred eeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001859 959 LSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1003 (1003)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1003 (1003)
++++++|..+. +| +.+.+.||.||+||||..
T Consensus 898 l~e~v~~~~~~-------------~p-~~~~~~e~~pp~~fey~~ 928 (929)
T KOG2062|consen 898 LIELVRPTAAA-------------SP-AEPGETEPKPPEPFEYPS 928 (929)
T ss_pred HHHhccccccC-------------CC-CCCCCCCCCCCCccCCCC
Confidence 99999976331 22 334567899999999963
No 2
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-199 Score=1647.88 Aligned_cols=919 Identities=40% Similarity=0.641 Sum_probs=840.4
Q ss_pred cccccHHHHHhhccCCChhHHHHHHHHHHHHHHhhhhHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCchhH
Q 001859 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDS 83 (1003)
Q Consensus 4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~es 83 (1003)
|++|||++++++|.|...+++.+||..++..||+.|+||++.++.||.+|+|.+|+ .|+|||+++|||||.||||++|
T Consensus 1 ~~~tta~~L~all~e~~d~~~~~Al~~In~~vDqlwpeIsddl~~Ie~lydd~sf~--~remaaL~~SKvYy~LgeY~~A 78 (926)
T COG5116 1 MSMTTARILPALLAELRDGRESEALDVINAHVDQLWPEISDDLRYIEALYDDDSFD--PREMAALCLSKVYYVLGEYQQA 78 (926)
T ss_pred CccchhhhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhchhhHHHHhhccCCCC--HHHHHHHHHHHHHHHHHhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Q 001859 84 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECR 163 (1003)
Q Consensus 84 L~yaL~ag~~fd~~~~~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~~~~~~~~~~~~AigialE~~ 163 (1003)
++|||.||+.|++++.|.|++||+.||||+|++...+.+..++ ...||++|..++++|+++|+++++...++||++|..
T Consensus 79 i~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~-~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~eg~ 157 (926)
T COG5116 79 IEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGD-KDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGL 157 (926)
T ss_pred HHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCC-cccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776654 346899999999999999999999999999999999
Q ss_pred chHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001859 164 RLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 243 (1003)
Q Consensus 164 rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Lnd~~~v~~il~~L~~ 243 (1003)
|+|+|+.++.. .+-.++..|++..+++++.+..||+++||.+.+++...+.||||.+.+|.++|||.+.++++|++|++
T Consensus 158 rldiie~~l~~-~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 158 RLDIIEKYLSD-GNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred HHHHHHHHHhC-CCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHh
Confidence 99999999997 88899999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccCCccHHHHhhhhhccccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCC
Q 001859 244 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE 323 (1003)
Q Consensus 244 ~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1003)
++|.++--|+||||+++++|+|++-+...+-. +
T Consensus 237 ---end~~l~aqvAFdledsasqe~leil~t~~vA--------------------------------~------------ 269 (926)
T COG5116 237 ---ENDLLLYAQVAFDLEDSASQEILEILVTELVA--------------------------------Q------------ 269 (926)
T ss_pred ---hhhhhhhhhheehhccccCHHHHHhccchhhh--------------------------------c------------
Confidence 45555555999999999999999543211100 0
Q ss_pred ChhhHHHHHHHHHHhhccCCCchhHhhHHHHhhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchh
Q 001859 324 DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLREN 403 (1003)
Q Consensus 324 ~~~~~~~~~~l~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~k~~ld~r~s~~~~A~~~~nafmnaGt~~D~flr~n 403 (1003)
+ .-..++.||||+.+.+++..||..+|++|+++|++.|++++.|+|++|+|++|+|+|||+||++|+|+|+|
T Consensus 270 ~--------~d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~fH~avs~AN~fMn~GTs~dsf~r~N 341 (926)
T COG5116 270 G--------YDQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSRFHYAVSLANSFMNLGTSNDSFYRNN 341 (926)
T ss_pred c--------ccHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhhhhhHHHHHHHHhhcCCCcchHhhcC
Confidence 0 11458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhccc
Q 001859 404 LDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS 483 (1003)
Q Consensus 404 l~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~ 483 (1003)
++|++|++||+||+||||||+||+||.++|.++|.+|||+. ..++.|++|||+|||||||+|++.+..++|.+++.+
T Consensus 342 l~wlgka~nWaKFtatAslGvIH~gn~n~~~~il~pYLP~e---~ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~ 418 (926)
T COG5116 342 LDWLGKASNWAKFTATASLGVIHLGNSNPGYEILKPYLPSE---VASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLD 418 (926)
T ss_pred chhhhhcchHhhhhhhhhceeEeeccCCchhHhhhccCCcc---cchhhhccCceeeeehhhccCcCcccHHHHHHHhCc
Confidence 99999999999999999999999999999999999999985 346789999999999999999999999999998887
Q ss_pred CCch---hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhH
Q 001859 484 TNVE---VIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKI 559 (1003)
Q Consensus 484 ~~~~---~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i 559 (1003)
+.++ .+.+|+|||+|+++||++|+++|+.|++++++|+++.+++|++||||+|+||+..+++ +|++|+++|||++|
T Consensus 419 teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i 498 (926)
T COG5116 419 TEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERI 498 (926)
T ss_pred ccccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhH
Confidence 6665 9999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 001859 560 IRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGF 639 (1003)
Q Consensus 560 ~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGl 639 (1003)
.|++++|++|+.||||+.++.+|..|..++|+++||++++++++|||||||..+|+.|||++++|.+|||||+||++|||
T Consensus 499 ~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGf 578 (926)
T COG5116 499 KRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGF 578 (926)
T ss_pred HhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccc
Q 001859 640 VLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 719 (1003)
Q Consensus 640 I~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~p 719 (1003)
|+++++..+++++++|+++||+|||+|+|+|||++|||+|++.++++|++++.|+++||||+|+||+|||++|+|...+|
T Consensus 579 vc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 579 VCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred eEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHHHhHhHHHHHHHHhhccC
Q 001859 720 RVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFS 799 (1003)
Q Consensus 720 kva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~a~vGll~f~q~~yw~pl~~~lsla~~ 799 (1003)
+++.+++.|.+++.+||++..+++||.+||||+++||||+||++++.+|.++..++||+.+|+||||||||.||+||+|.
T Consensus 659 ~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~l~natG~l~~~~ivGlv~FlqyWYWfPL~hf~SLsf~ 738 (926)
T COG5116 659 NVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNATGILSADRIVGLVLFLQYWYWFPLIHFVSLSFL 738 (926)
T ss_pred hHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEEEecccCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeccCCCCCCeEEEeeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 001859 800 PTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSS 879 (1003)
Q Consensus 800 P~~li~ld~~l~~p~~~~~~~~~~~~f~yp~~~~~~~~~~~~k~~tavLS~t~k~~~r~~~~~~~~~~~~~~~~~~~~~~ 879 (1003)
||.+||++.++.+|+|.|+|+.+|..|+||++.++++.|+++||.|||||||+||++|+|++++||+..+++ .+.+..+
T Consensus 739 Pttvigi~~s~~~pkF~fn~~~~e~~f~yP~~~~e~s~k~v~kv~tavlsttika~aRaK~~~kEkg~nd~E-~kie~~~ 817 (926)
T COG5116 739 PTTVIGIRGSQAIPKFCFNEDLEEEEFEYPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKE-IKIESPS 817 (926)
T ss_pred cceeecccccccCceeeeccccCHhhhcCCccccccccchhhhhhhheechhHHHHHHhhhCccccCCCchh-hhccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999998775443221 1222211
Q ss_pred cCCCCCCCccC-CCCCCCCCCC-CCCCCCCCCcccccCCccccccccceeeecCCCCceecccCCCcEEEEecCCCCCcc
Q 001859 880 AGKGKSSNEKD-GDSMQVDAPP-EKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPE 957 (1003)
Q Consensus 880 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~~~~gii~l~d~~p~e~~ 957 (1003)
.+...+....+ .|++..+.+- .-+++.+| +.+.|+.||+|+|.+||+|.+|+||+|||+.+||++||+|+.|.||.
T Consensus 818 ~e~e~e~~~~~~~Eek~~D~~~~~n~kk~kp--~~vdn~trilp~q~~yisf~~d~r~~pvrkf~ggvv~l~dre~~~~~ 895 (926)
T COG5116 818 VETEGERCTIKQREEKGIDAPAILNVKKKKP--YKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGGVVVLRDREPKEPV 895 (926)
T ss_pred hhhhcccCchhhhhhhccChhhhhcccccCC--cchhhhhhhccccCceeEEeeCCceEEeEeecCcEEEEecCCCCcch
Confidence 11001111000 0100001111 11222333 88999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001859 958 VLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1003 (1003)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1003 (1003)
.+||+++|..+. .+ .-..+..||+.|+|++
T Consensus 896 ~lie~~r~~~~~------------na----p~~~~~~~~dn~d~p~ 925 (926)
T COG5116 896 ALIETVRQMKDV------------NA----PLPTPFKVDDNVDFPS 925 (926)
T ss_pred hHHHHHHhcccC------------CC----CCCCCCCCCccCCCCC
Confidence 999999976432 00 1123456788888864
No 3
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-135 Score=1150.60 Aligned_cols=729 Identities=22% Similarity=0.316 Sum_probs=658.8
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHHhhh----------hHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCch
Q 001859 12 LLAMLNESHPSLKLHALSNLNSFVDQFW----------PEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELN 81 (1003)
Q Consensus 12 ~l~lL~e~d~~l~~~AL~~L~~~v~~~w----------~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~ 81 (1003)
++.+++|||++|+..||++|+++||+++ +|+|+||++++++|+.|. ++..|+++|||+|++.|+..+..
T Consensus 53 lVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~-~~n~Kk~laDIlSvLamt~se~~ 131 (878)
T KOG2005|consen 53 LVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA-DSNLKKWLADILSVLAMTMSERG 131 (878)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc-CchhHhHHHHHHHHHheeecccc
Confidence 6789999999999999999999999997 789999999999999998 45688889999999999999999
Q ss_pred hHHHHHhhcCCCCCCCCC-chHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHH
Q 001859 82 DSLSYALGAGSLFDVSED-SDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAI 160 (1003)
Q Consensus 82 esL~yaL~ag~~fd~~~~-~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~~~~~~~~~~~~Aigial 160 (1003)
+.|+|||. |+..|+++| |||||||+++|.++|.. ++.. .+.+ .+|.+++.+||+|+|+||+|.+|||+++
T Consensus 132 ~~l~YRl~-G~~~d~~~WGHeYVRhLageIaee~~~-~~~e------~~~~-~dl~~l~~~iV~f~mkHNAE~eAiDlL~ 202 (878)
T KOG2005|consen 132 EHLAYRLL-GSIIDLGSWGHEYVRHLAGEIAEEYNN-REME------APSK-ADLLDLVQEIVPFHMKHNAEFEAIDLLM 202 (878)
T ss_pred hheeeeec-cccCChhhhHHHHHHHHHHHHHHHHhh-cccc------ccch-HHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999 689999999 99999999999999998 3321 1224 7999999999999999999999999999
Q ss_pred hccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 001859 161 ECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEK 240 (1003)
Q Consensus 161 E~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Lnd~~~v~~il~~ 240 (1003)
|++++|++.++|++ +||.|+|+|+.+|+.+ ++.|+. ..+||+++.||+||. +|.++++|+++|||.+.|+++|.+
T Consensus 203 Eve~id~l~~~Vd~-~n~~RvclYl~sc~~~-lP~Pdd-~~ll~~a~~IYlKf~--~~~~al~~ai~l~~~~~v~~vf~s 277 (878)
T KOG2005|consen 203 EVEGIDLLLDYVDE-HNYQRVCLYLTSCVPL-LPGPDD-VALLRTALKIYLKFN--EYPRALVGAIRLDDMKEVKEVFTS 277 (878)
T ss_pred HhhhHhHHHHHhhh-hhHHHHHHHHHHHhhc-CCCchh-hHHHHHHHHHHHHHH--HhHHHHHHHHhcCcHHHHHHHHHh
Confidence 99999999999998 9999999999998865 555553 579999999999999 999999999999999999999999
Q ss_pred HHhccCCccHHHHhhhhhccccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCC
Q 001859 241 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNV 320 (1003)
Q Consensus 241 L~~~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1003)
| .|+++.+|+||.|++++. |++ + +++++..++++|
T Consensus 278 ~------~D~~~kKQ~~ymLaR~~i--~~e-----~-----------------------~~~e~l~di~sN--------- 312 (878)
T KOG2005|consen 278 C------TDPLLKKQMAYMLARHGI--YFE-----L-----------------------SEDEELQDILSN--------- 312 (878)
T ss_pred c------cCHHHHHHHHHHHHhcCC--cee-----c-----------------------CcCHHHHHHHcc---------
Confidence 5 799999999999999643 110 1 113456667777
Q ss_pred CCCChhhHHHHHHHHHHhhccCCCchhHhhHHHHhhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhh
Q 001859 321 QDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFL 400 (1003)
Q Consensus 321 ~~~~~~~~~~~~~l~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~k~~ld~r~s~~~~A~~~~nafmnaGt~~D~fl 400 (1003)
.+.+++|+.++++++|+.|++|++|||.||+.++... ...+| |+++|+|.+||||||||||++|++|
T Consensus 313 ----~~Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s-------~a~vd--Sarqnla~~fvNgFVn~Gyg~Dkl~ 379 (878)
T KOG2005|consen 313 ----GKLSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGS-------GAGVD--SARQNLAATFVNGFVNAGYGQDKLM 379 (878)
T ss_pred ----ccHHHHHHHHHHHhcccCCCChHHHHHHHHhcccccc-------ccCcc--HHHHHHHHHHHHHHhhcccCCCcee
Confidence 6889999999999999999999999999999876221 23455 7899999999999999999999999
Q ss_pred chhh----hhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccch---HhH
Q 001859 401 RENL----DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG---EGI 473 (1003)
Q Consensus 401 r~nl----~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~---~~a 473 (1003)
.++. .|+|||+.+++.+|+||+|+|..||++.|+.++++|||++ .+|+++|||+|+|++++|+. ++|
T Consensus 380 ~~~~~s~~~w~yknke~g~~sa~aS~G~I~~Wnvd~gL~qldkylys~------~~~ikaGaLLgigi~~~gv~ne~dpa 453 (878)
T KOG2005|consen 380 LVQEGSRVNWLYKNKEHGMTSAAASLGMIQLWNVDKGLEQLDKYLYSD------ESYIKAGALLGIGISNSGVFNECDPA 453 (878)
T ss_pred ccCccccCcceeeccccCchHhhhhcchhheecchhhHHHHHHHhhcC------CchhhhccceeeeeeccccccccCHH
Confidence 9855 6999999999999999999999999999999999999986 89999999999999999988 589
Q ss_pred HHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChh--hHHHHHHHHhhhhcCCCchHHH-HHHHH
Q 001859 474 KQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAV--AGEAAGISMGLLMVGTASEKAG-EMLTY 550 (1003)
Q Consensus 474 l~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~--~~e~AalALGLI~~Gs~n~~a~-~LL~~ 550 (1003)
+++|++|+.+ ++..+|.||+||||++|+|++|+++..+|.|++.++++. +...|+++||+||+||||+++. .+|+.
T Consensus 454 lALLsdyv~~-~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqt 532 (878)
T KOG2005|consen 454 LALLSDYLQS-SSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQT 532 (878)
T ss_pred HHHHHHhccC-CCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHH
Confidence 9999999998 458999999999999999999999999999999654433 4447999999999999999999 88886
Q ss_pred hhhc---C-chhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHH--HHHHHHHhcC
Q 001859 551 AHET---Q-HEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAI--RQLLHFAVSD 624 (1003)
Q Consensus 551 ~~et---~-~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI--~~LL~~~vsd 624 (1003)
+.+. + .+.+.||++||||++|+|++|.++++.+.++..++|+.++..+++.+|||+||||+..| +.++|+|.++
T Consensus 533 lmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~ 612 (878)
T KOG2005|consen 533 LMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEH 612 (878)
T ss_pred HHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCC
Confidence 5543 2 78999999999999999999999999999999999999999999999999999999999 8999999885
Q ss_pred CCh--hHHHHHHHHHhhhcCCCC---CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHH
Q 001859 625 VSD--DVRRTAVLALGFVLYSEP---EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVR 699 (1003)
Q Consensus 625 ~~d--dvrr~Avl~LGlI~~g~~---e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vr 699 (1003)
..+ .....||+|+|+|+||++ +|+.|++++++++++||+|+++|+|+|+.|+++|+..++|+|++++||.|.+|.
T Consensus 613 ~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva 692 (878)
T KOG2005|consen 613 DADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVA 692 (878)
T ss_pred ccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHH
Confidence 433 345699999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEEEe-ccCCCCCchhHHHHH
Q 001859 700 QGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL-LSKTKHDKITAVVGL 778 (1003)
Q Consensus 700 q~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl-~s~~~~~~~~a~vGl 778 (1003)
.+||+|||+||+||||+| +++++|||++|+ |+|+.+.|.++|||||+|+|||++|++| |+++.+++|++++|+
T Consensus 693 ~naIfamGLiGAGTnNAR---la~mLrqlaSYy---yKd~~~Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl 766 (878)
T KOG2005|consen 693 MNAIFAMGLIGAGTNNAR---LAQMLRQLASYY---YKDSKALFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGL 766 (878)
T ss_pred HHHHHHhccccCCcchHH---HHHHHHHHHHHH---hccchhHHHHHHHHHHHHhcCCceecccccchhhhhchHHHHHH
Confidence 999999999999999998 999999999986 8999999999999999999999999999 479999999999999
Q ss_pred HHHHHhH---------hHHHHHHHHhhccCCcEEEeccCCCCCCeEEEeeCCCCCCC
Q 001859 779 SVFSQFW---------YWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLF 826 (1003)
Q Consensus 779 l~f~q~~---------yw~pl~~~lsla~~P~~li~ld~~l~~p~~~~~~~~~~~~f 826 (1003)
+..+... -.||++|||.+||+|||++|+|+++++..+.++.+-.-.+.
T Consensus 767 ~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl~V~VRVGqaVdvV 823 (878)
T KOG2005|consen 767 LTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPLPVNVRVGQAVDVV 823 (878)
T ss_pred HHHHHHHhccchhccchHHHHHHHHHHhhCceEEEeecccCccccceeeccchhhhh
Confidence 8543211 16889999999999999999999999987887776554443
No 4
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-113 Score=949.58 Aligned_cols=731 Identities=19% Similarity=0.208 Sum_probs=655.0
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHHhhh----------hHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCc-
Q 001859 12 LLAMLNESHPSLKLHALSNLNSFVDQFW----------PEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGEL- 80 (1003)
Q Consensus 12 ~l~lL~e~d~~l~~~AL~~L~~~v~~~w----------~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~- 80 (1003)
++.+++|+|++|+..+|.+|.++|++++ +++|++|..+.+.|++|.-+..+|.| |||+|.+.|...+.
T Consensus 52 lVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~L-aDilS~l~m~yse~~ 130 (881)
T COG5110 52 LVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWL-ADILSALCMVYSENG 130 (881)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHH-HHHHHHHeeeccccc
Confidence 6789999999999999999999999996 67999999999999999965444554 59999999998763
Q ss_pred -hhHHHHHhhcCCCCCCCCC-chHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHH
Q 001859 81 -NDSLSYALGAGSLFDVSED-SDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGI 158 (1003)
Q Consensus 81 -~esL~yaL~ag~~fd~~~~-~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~~~~~~~~~~~~Aigi 158 (1003)
.++|+|||. |+..|+.+| |||||||+++|.+.|..+.+.. .+.-.++.++-..||||+++||+|.+|||+
T Consensus 131 kh~sL~YRl~-g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~d-------aps~~dt~~l~l~ivpfflkHNaE~dAiDl 202 (881)
T COG5110 131 KHKSLAYRLE-GNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMD-------APSFADTRDLGLEIVPFFLKHNAEFDAIDL 202 (881)
T ss_pred chhhHHHHhh-cccCCHHHHHHHHHHHHHHHHHHHhcchhhcc-------CCchhHHHHHHHHHhHHHHhcccchHHHHH
Confidence 599999999 689999999 9999999999999998776542 221278999999999999999999999999
Q ss_pred HHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHH
Q 001859 159 AIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSIL 238 (1003)
Q Consensus 159 alE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Lnd~~~v~~il 238 (1003)
++|+..+|++.++|+. +||.|+|+|+.+|+ .+.++|++ ..+|+++++||+++. |..++.-.+|+|++.+.+.+.+
T Consensus 203 L~Evg~Iekv~~fVd~-~n~~RvclYl~~cv-~llp~ped-Va~l~ta~~IYlk~~--~lt~av~~aiRl~~~~~i~e~~ 277 (881)
T COG5110 203 LVEVGGIEKVLDFVDT-HNYNRVCLYLEDCV-PLLPPPED-VALLETALKIYLKMG--DLTRAVVGAIRLQKSKEIIEYV 277 (881)
T ss_pred HHHhcchhhhhhhhcc-cchhHHHHHHHHhh-ccCCChHH-HHHHHHHHHHHHhhh--HHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999999998 99999999998877 67788887 689999999999998 8888899999999999999999
Q ss_pred HHHHhccCCccHHHHhhhhhccccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCC
Q 001859 239 EKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNV 318 (1003)
Q Consensus 239 ~~L~~~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1003)
+.. .|+.+.+|++|+|+++.. + +. ..++++.++++|
T Consensus 278 ~a~------~Dp~~kKQ~~YiLArq~~-----------~--~e------------------~~dee~~dil~N------- 313 (881)
T COG5110 278 RAI------EDPDYKKQCLYILARQNL-----------Y--YE------------------ASDEEEKDILSN------- 313 (881)
T ss_pred Hhc------cChHHHHHHHHHHHhccC-----------C--cc------------------cCCHHHHHHhcC-------
Confidence 984 799999999999998532 1 11 124556677777
Q ss_pred CCCCCChhhHHHHHHHHHHhhccCCCchhHhhHHHHhhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcch
Q 001859 319 NVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDT 398 (1003)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~k~~ld~r~s~~~~A~~~~nafmnaGt~~D~ 398 (1003)
.+.++||+.+.+++++..|+.|++|||.||...+.+ .- -..++ ++.+|+|.+|+|+|+|+|+.+|+
T Consensus 314 ------g~lsdhf~ylgkELnl~~PkvpedI~K~hl~~~k~~--~~----~agi~--sA~qnla~~fvn~~inlgy~nD~ 379 (881)
T COG5110 314 ------GYLSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDT--RQ----LAGIG--SANQNLAMGFVNDPINLGYENDS 379 (881)
T ss_pred ------CcHHHHHHHHHHHhcCCCCCChHHHHHhhhhccccc--hh----hcccc--hhhhHHHHhhhccccccCccCCe
Confidence 789999999999999999999999999998754322 11 12333 67899999999999999999999
Q ss_pred hhchhhhhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccch---HhHHH
Q 001859 399 FLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG---EGIKQ 475 (1003)
Q Consensus 399 flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~---~~al~ 475 (1003)
++-.+-+|+||++..+..||++|+|+|..||.+.|+.+|++|||.+ .+|.|+||++++|+-+.++. +++++
T Consensus 380 li~~dd~wiyk~k~~gliSa~aSIG~i~~WN~d~gl~~Ldkyly~d------e~~~KaGaLLGig~s~~~v~~E~~pala 453 (881)
T COG5110 380 LIPLDDEWIYKCKVPGLISAFASIGVIESWNSDKGLETLDKYLYAD------ESYRKAGALLGIGLSGLRVFEERPPALA 453 (881)
T ss_pred eeecchhhhhcCCCCChhheeecchhhhhhhhHhhHHHHHHHHhcC------cccccccceeeeeecccccccccchHHH
Confidence 9998999999999999999999999999999999999999999985 88999999999999998887 47999
Q ss_pred HHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCCh--hhHHHHHHHHhhhhcCCCchHHH-HHHHHhh
Q 001859 476 FLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSA--VAGEAAGISMGLLMVGTASEKAG-EMLTYAH 552 (1003)
Q Consensus 476 ~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~--~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~ 552 (1003)
+|++||.+ .+..++..|+||||+++.|++++++.++|.|++.+++. .....|+++||+||+||||+++. .+++...
T Consensus 454 lLs~yl~s-~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~ 532 (881)
T COG5110 454 LLSNYLQS-SSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFV 532 (881)
T ss_pred HHHHhccC-CchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHH
Confidence 99999998 45899999999999999999999999999999976543 34457999999999999999999 7777554
Q ss_pred hc----CchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChh
Q 001859 553 ET----QHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD 628 (1003)
Q Consensus 553 et----~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~dd 628 (1003)
+. ++..|.||++||||.+||||++.+|+..+.++....++.|...+++-||+|+||||+..||.|||+|.+-..|+
T Consensus 533 Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~ 612 (881)
T COG5110 533 ERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDT 612 (881)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCccc
Confidence 43 36789999999999999999999999999999999999999999999999999999999999999987754443
Q ss_pred -------HHHHHHHHHhhhcCCCC---CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHH
Q 001859 629 -------VRRTAVLALGFVLYSEP---EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFV 698 (1003)
Q Consensus 629 -------vrr~Avl~LGlI~~g~~---e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~V 698 (1003)
+..+|++|+++|+||+. ||+.|.+.++++++++|+|...|+|+|+.++++|++.+.|+|++.+||.|-+|
T Consensus 613 ~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v 692 (881)
T COG5110 613 LKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNV 692 (881)
T ss_pred chhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhH
Confidence 67899999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEEEec-cCCCCCchhHHHH
Q 001859 699 RQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SKTKHDKITAVVG 777 (1003)
Q Consensus 699 rq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~-s~~~~~~~~a~vG 777 (1003)
..++++|||+||+||+|+| +++++||+++|| |++..+.|..+|||||+++|||++||+|+ .++..+.+++.+|
T Consensus 693 ~~ntIfamGLiGAGT~NaR---laqlLrQlaSYY---~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~ag 766 (881)
T COG5110 693 IINTIFAMGLIGAGTLNAR---LAQLLRQLASYY---YKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAG 766 (881)
T ss_pred HHHHHHHhhccccCcchHH---HHHHHHHHHHHH---hhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHH
Confidence 9999999999999999998 999999999997 89999999999999999999999999996 5999999999999
Q ss_pred HHHHH----H---h--HhHHHHHHHHhhccCCcEEEeccCCCCCCeEEEeeCCCCCCCC
Q 001859 778 LSVFS----Q---F--WYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFE 827 (1003)
Q Consensus 778 ll~f~----q---~--~yw~pl~~~lsla~~P~~li~ld~~l~~p~~~~~~~~~~~~f~ 827 (1003)
++... . | -..|.++|||.++++|+++||++++.++.++.++.+-.-.+..
T Consensus 767 l~ttv~~lld~~~f~L~ssH~l~y~l~~~irp~~~vtl~e~ge~i~vnvRVGqav~tVG 825 (881)
T COG5110 767 LFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKYVTLSEKGEPIKVNVRVGQAVNTVG 825 (881)
T ss_pred HHHHHHHHHccccchhhhhHHHHHHHHhccCcceEEEecCCCceeeeEEeecchhhhhh
Confidence 98322 1 1 1167799999999999999999999999999999887665544
No 5
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-43 Score=401.86 Aligned_cols=347 Identities=24% Similarity=0.315 Sum_probs=289.2
Q ss_pred hHHHHHHHHhhcCCCcchhhchhhhhhHhhcchhhHH----H-HHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCch
Q 001859 381 SATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS----A-TAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSE 455 (1003)
Q Consensus 381 ~A~~~~nafmnaGt~~D~flr~nl~Wl~k~~~w~kfs----A-taSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k 455 (1003)
...-+-+.|.-.....|..+.++. +.--|+| | +.++|++|.|+.+|.+ ++..|.|-+ ...+|.|
T Consensus 290 ~tik~~l~FL~~~N~tD~~iL~~i------K~s~r~sv~H~A~~iAN~fMh~GTT~D~F--lR~NL~Wls---kAtNWaK 358 (929)
T KOG2062|consen 290 ETIKLYLQFLLRHNNTDLLILEEI------KESVRNSVCHTATLIANAFMHAGTTSDTF--LRNNLDWLS---KATNWAK 358 (929)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHH------HHHHHHhhhhHHHHHHHHHHhcCCcchHH--HHhchhHHh---hcchHhh
Confidence 344555666655556665444322 2222332 3 3899999999999987 777777652 3589999
Q ss_pred hhHHHHHhhhhccchHhHHHHHHhhcccC---CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcC-CChhhHHHHHHH
Q 001859 456 GGALYALGLIHANHGEGIKQFLRDSLRST---NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYT-DSAVAGEAAGIS 531 (1003)
Q Consensus 456 ~GAl~ALGLI~~g~~~~al~~L~~~L~~~---~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~-Ds~~~~e~AalA 531 (1003)
..|+++||+||.||..+++..|..||... ++.+...||++|||+|++|+++. +.+.|++.|.+ ++++.+.+++||
T Consensus 359 FtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~~e~v~hG~cLG 437 (929)
T KOG2062|consen 359 FTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAENEVVRHGACLG 437 (929)
T ss_pred hhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc-HHHHHHHHHHhccchhhhhhhhhh
Confidence 99999999999999999999999999873 44788899999999999999877 88888888854 456778899999
Q ss_pred HhhhhcCCCchHHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCH
Q 001859 532 MGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANN 611 (1003)
Q Consensus 532 LGLI~~Gs~n~~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~ 611 (1003)
|||+.+||.|.++.+.++ .+...++.+...++.+++||...||+|.
T Consensus 438 lGLa~mGSa~~eiYe~lK----------------------------------evLy~D~AvsGEAAgi~MGl~mlGt~~~ 483 (929)
T KOG2062|consen 438 LGLAGMGSANEEIYEKLK----------------------------------EVLYNDSAVSGEAAGIAMGLLMLGTANQ 483 (929)
T ss_pred ccchhcccccHHHHHHHH----------------------------------HHHhccchhhhhHHHHhhhhHhhCcCcH
Confidence 999999999888875443 2223466778888899999999999999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-HHhhh
Q 001859 612 KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPL 690 (1003)
Q Consensus 612 ~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-lL~~l 690 (1003)
++|..|++++.++..+.+.|...+||+++.+|.+|-++.+|+.|..+.||.+||+..++++++|+||||..+|. +|+..
T Consensus 484 eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~a 563 (929)
T KOG2062|consen 484 EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVA 563 (929)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 89999
Q ss_pred cCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCc-eEEEec-----
Q 001859 691 TSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRN-VTIRLL----- 764 (1003)
Q Consensus 691 ~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n-~tisl~----- 764 (1003)
.+|++|+||++|++|||+|+..+++. +|.+.+ .+++ +.+|++|+|+++|+||.|+|+|+ ..|++.
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~-~~s~V~-------lLse-s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQ-LPSTVS-------LLSE-SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhh-chHHHH-------HHhh-hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 99999999999999999999999885 566543 3344 44599999999999999999887 566653
Q ss_pred cCCCCCchhHHHHHHHHH
Q 001859 765 SKTKHDKITAVVGLSVFS 782 (1003)
Q Consensus 765 s~~~~~~~~a~vGll~f~ 782 (1003)
...+++|+.|++++.|.+
T Consensus 635 D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 635 DPVDFVRQGALIALAMIM 652 (929)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 257899999999998765
No 6
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=342.01 Aligned_cols=346 Identities=21% Similarity=0.286 Sum_probs=278.1
Q ss_pred HHHHHHhhcCCCcchhhchhhhhhHhhcchhhHH-----HHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhH
Q 001859 384 IYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS-----ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGA 458 (1003)
Q Consensus 384 ~~~nafmnaGt~~D~flr~nl~Wl~k~~~w~kfs-----AtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GA 458 (1003)
-+-++|+-.....|..+.+. .|.+--+||| .+.++|++|.|+.++.+ ++..++|-+ ..++|.|..|
T Consensus 286 ky~~~FLl~~nntd~~~Ln~----sk~sl~~k~s~fH~avs~AN~fMn~GTs~dsf--~r~Nl~wlg---ka~nWaKFta 356 (926)
T COG5116 286 KYLGAFLLEKNNTDFKFLNS----SKSSLARKFSRFHYAVSLANSFMNLGTSNDSF--YRNNLDWLG---KASNWAKFTA 356 (926)
T ss_pred HHHHHHHHhcCCcceeehhc----chhhhhhhhhhhhhHHHHHHHHhhcCCCcchH--hhcCchhhh---hcchHhhhhh
Confidence 45566666655555443321 1222234444 45899999999999987 666666653 3589999999
Q ss_pred HHHHhhhhccchHhHHHHHHhhcccC--CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhh-cCCC---hhhHHHHHHHH
Q 001859 459 LYALGLIHANHGEGIKQFLRDSLRST--NVEVIQHGACLGLGLAALGTADEDIYDDIKNVL-YTDS---AVAGEAAGISM 532 (1003)
Q Consensus 459 l~ALGLI~~g~~~~al~~L~~~L~~~--~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L-~~Ds---~~~~e~AalAL 532 (1003)
.++||.||.|+..++...|..||.+. ++.+...||++|||+|++|.++ +..+.|++.+ .+.+ ++...++++|+
T Consensus 357 tAslGvIH~gn~n~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr-~~TeYL~e~~~~teDe~~~~l~yG~~LGi 435 (926)
T COG5116 357 TASLGVIHLGNSNPGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGR-EDTEYLLEYFLDTEDELTPELAYGVCLGI 435 (926)
T ss_pred hhhceeEeeccCCchhHhhhccCCcccchhhhccCceeeeehhhccCcCc-ccHHHHHHHhCcccccccHHHHHHHHhhh
Confidence 99999999999999999999999864 3458899999999999999764 4567777554 2222 35566899999
Q ss_pred hhhhcCCCchHHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHH
Q 001859 533 GLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNK 612 (1003)
Q Consensus 533 GLI~~Gs~n~~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~ 612 (1003)
||+.+||.|.++.+-++- +...+......++++.+||...||+.++
T Consensus 436 GL~~MgSan~eiye~lKe----------------------------------~l~nD~a~~geAa~~gMGl~mLgt~s~e 481 (926)
T COG5116 436 GLINMGSANREIYEKLKE----------------------------------LLKNDRALLGEAAVYGMGLLMLGTWSVE 481 (926)
T ss_pred cchhcccccHHHHHHHHH----------------------------------HHhcchhhhhhhhhhccceeeecCCCHH
Confidence 999999999988743331 1222345556667777778888999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-HHhhhc
Q 001859 613 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLT 691 (1003)
Q Consensus 613 aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-lL~~l~ 691 (1003)
+|..|++++.++..+.+.|...+|+++|.+|++|++..++..|..+.+|..||+.++++|++|+||||..+|. +|+...
T Consensus 482 ai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~av 561 (926)
T COG5116 482 AIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAV 561 (926)
T ss_pred HHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 888889
Q ss_pred CCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCc-eEEEec-----c
Q 001859 692 SDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRN-VTIRLL-----S 765 (1003)
Q Consensus 692 ~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n-~tisl~-----s 765 (1003)
+|.+|+||++|+||||+|++...+. +...++.|+ +.| ++++|.|+++|+||.++|+|. +.+.+. .
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~~~----lv~tvelLs----~sh-N~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D 632 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDRDL----LVGTVELLS----ESH-NFHVRAGVAVALGIACAGTGDKVATDILEALMYD 632 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCcch----hhHHHHHhh----hcc-chhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhC
Confidence 9999999999999999999988876 444555554 344 599999999999999999664 665542 3
Q ss_pred CCCCCchhHHHHHHHHH
Q 001859 766 KTKHDKITAVVGLSVFS 782 (1003)
Q Consensus 766 ~~~~~~~~a~vGll~f~ 782 (1003)
.+.++++.|++|+.|.+
T Consensus 633 ~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 633 TNDFVRQSAMIAVGMIL 649 (926)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 56789999999988654
No 7
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-35 Score=332.19 Aligned_cols=354 Identities=21% Similarity=0.263 Sum_probs=279.9
Q ss_pred HHHhhccCCCchhHhhHHHHhhcCCcchhhhhhh-hhhhccccccchhHHHHHHHHhhcCCCcchhhchhhhhhHhhcch
Q 001859 335 NKIKGILSGETSIQLTLQFLYSHNKSDLLILKTI-KQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNW 413 (1003)
Q Consensus 335 ~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~-k~~ld~r~s~~~~A~~~~nafmnaGt~~D~flr~nl~Wl~k~~~w 413 (1003)
+.+.+|++|....+.|...-.+.+-.+++.++.| |+|++ +++..+ |-+.|+ .|.|
T Consensus 304 e~l~di~sN~~Lse~f~~LarELeimepk~pedIyK~hl~--~~r~~s-----------~a~vdS-arqn---------- 359 (878)
T KOG2005|consen 304 EELQDILSNGKLSEHFLYLARELEIMEPKVPEDIYKSHLE--DSRGGS-----------GAGVDS-ARQN---------- 359 (878)
T ss_pred HHHHHHHccccHHHHHHHHHHHhcccCCCChHHHHHHHHh--cccccc-----------ccCccH-HHHH----------
Confidence 5689999999944444444444444445555555 99997 333221 345566 4544
Q ss_pred hhHHHHHHhhhhcCCCchhhhhhc-----cccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchh
Q 001859 414 AKFSATAGLGVIHRGHLQQGRSLM-----APYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEV 488 (1003)
Q Consensus 414 ~kfsAtaSLG~Ih~g~~~~~l~~L-----~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~ 488 (1003)
+++++.+|++|.|+..|.+..- .+|+|++ ..+.+-.|++++|+|..|+.|.++..|.+||.+ ++++
T Consensus 360 --la~~fvNgFVn~Gyg~Dkl~~~~~~s~~~w~ykn------ke~g~~sa~aS~G~I~~Wnvd~gL~qldkylys-~~~~ 430 (878)
T KOG2005|consen 360 --LAATFVNGFVNAGYGQDKLMLVQEGSRVNWLYKN------KEHGMTSAAASLGMIQLWNVDKGLEQLDKYLYS-DESY 430 (878)
T ss_pred --HHHHHHHHHhhcccCCCceeccCccccCcceeec------cccCchHhhhhcchhheecchhhHHHHHHHhhc-CCch
Confidence 4889999999999999887544 2699987 789999999999999999999999999999998 5689
Q ss_pred HHHHHHHHHHHHhcCCCCH--HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHH-HHhhhcC-chhHHHHHH
Q 001859 489 IQHGACLGLGLAALGTADE--DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEML-TYAHETQ-HEKIIRGLA 564 (1003)
Q Consensus 489 vr~GA~LGLGla~~Gs~~e--~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL-~~~~et~-~e~i~r~~a 564 (1003)
++.||+||+|++++|..|+ +++.+|.+.+.+++...+.+|.+|||+.|.||.++++..+| ..+.++. ..++..+++
T Consensus 431 ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~~~~~ev~~~as 510 (878)
T KOG2005|consen 431 IKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDTKSPMEVVAFAS 510 (878)
T ss_pred hhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCCCCchhHHHHHH
Confidence 9999999999999999987 99999999998888899999999999999999999998444 4555544 233444444
Q ss_pred HHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCC----ChhHHHHHHHHHhhh
Q 001859 565 LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV----SDDVRRTAVLALGFV 640 (1003)
Q Consensus 565 lgLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~----~ddvrr~Avl~LGlI 640 (1003)
+++|+.|+||+|.++.+.+|+.+++.. .+..-|+..+|||++
T Consensus 511 ----------------------------------lsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~ll 556 (878)
T KOG2005|consen 511 ----------------------------------LSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALL 556 (878)
T ss_pred ----------------------------------hhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHH
Confidence 455666779999999999999988743 467899999999999
Q ss_pred cCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHH--H-HHhhhcC-CChhHH-HHHHHHHHHHHhccccc
Q 001859 641 LYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAI--S-LLEPLTS-DVVDFV-RQGALIAMAMVMVQINE 715 (1003)
Q Consensus 641 ~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aI--d-lL~~l~~-D~dd~V-rq~AiiALGlI~~gt~~ 715 (1003)
++|.+|.++.+++.+....+|.-++.-.+..+|+|+||||...| . +|+.+.. |.+..- ..-|++++|+|.+|..-
T Consensus 557 flgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeei 636 (878)
T KOG2005|consen 557 FLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEI 636 (878)
T ss_pred HhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999888 3 6666664 333332 33689999999998766
Q ss_pred cccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEE
Q 001859 716 ANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTI 761 (1003)
Q Consensus 716 a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~ti 761 (1003)
.. ++ .+|.+.+.+ +|.+|+.|..+++|+||++..+..++|
T Consensus 637 g~--eM--~lR~f~h~l--~yge~~iRravPLal~llsvSNPq~~v 676 (878)
T KOG2005|consen 637 GS--EM--VLRHFGHLL--HYGEPHIRRAVPLALGLLSVSNPQVNV 676 (878)
T ss_pred hh--HH--HHHHHHHHH--HcCCHHHHHHHHHHHhhhccCCCcchH
Confidence 53 23 467777766 567777777777777777777766644
No 8
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.6e-30 Score=286.71 Aligned_cols=354 Identities=19% Similarity=0.172 Sum_probs=292.9
Q ss_pred HHHhhccCCCchhHhhHHHHhhcCCcchhhhhhh-hhhhccc-cccchhHHHHHHHHhhcCCCcchhhchhhhhhHhhcc
Q 001859 335 NKIKGILSGETSIQLTLQFLYSHNKSDLLILKTI-KQSVEMR-NSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATN 412 (1003)
Q Consensus 335 ~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~-k~~ld~r-~s~~~~A~~~~nafmnaGt~~D~flr~nl~Wl~k~~~ 412 (1003)
+.+.+||+|....+.|...-.+.|-.+++.++.| |+|++.. +.++-.....+|.+++.||.+
T Consensus 305 ee~~dil~Ng~lsdhf~ylgkELnl~~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~fvn---------------- 368 (881)
T COG5110 305 EEEKDILSNGYLSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGFVN---------------- 368 (881)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhcCCCCCChHHHHHhhhhccccchhhcccchhhhHHHHhhhc----------------
Confidence 5588999999988888888888888999999988 9999743 333444456778888877665
Q ss_pred hhhHHHHHHhhhhcCCCchhhhhhc-cccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHH
Q 001859 413 WAKFSATAGLGVIHRGHLQQGRSLM-APYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQH 491 (1003)
Q Consensus 413 w~kfsAtaSLG~Ih~g~~~~~l~~L-~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~ 491 (1003)
+.|+.|..+|.+-.+ +.|+|+. +.-..-+|+.++|.|..|+.+.++..|.+||.. +.++.+.
T Consensus 369 ----------~~inlgy~nD~li~~dd~wiyk~------k~~gliSa~aSIG~i~~WN~d~gl~~Ldkyly~-de~~~Ka 431 (881)
T COG5110 369 ----------DPINLGYENDSLIPLDDEWIYKC------KVPGLISAFASIGVIESWNSDKGLETLDKYLYA-DESYRKA 431 (881)
T ss_pred ----------cccccCccCCeeeecchhhhhcC------CCCChhheeecchhhhhhhhHhhHHHHHHHHhc-Ccccccc
Confidence 468888888887665 4588886 556677888999999999999999999999998 4589999
Q ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHH-hhhcC-chhHHHHHHHHH
Q 001859 492 GACLGLGLAALGTADE--DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTY-AHETQ-HEKIIRGLALGI 567 (1003)
Q Consensus 492 GA~LGLGla~~Gs~~e--~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~-~~et~-~e~i~r~~algL 567 (1003)
||+||+|+.+.+..+| +++.+|.+.|.+.+...+.+|.+|||+.|.|+.++++.+||+- +-+|+ ..++..+
T Consensus 432 GaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~std~pie~~~~----- 506 (881)
T COG5110 432 GALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFF----- 506 (881)
T ss_pred cceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcCCCCcHHHHHH-----
Confidence 9999999999998865 8999999999878888888999999999999999999988873 33333 2233333
Q ss_pred hHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcC----CChhHHHHHHHHHhhhcCC
Q 001859 568 ALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD----VSDDVRRTAVLALGFVLYS 643 (1003)
Q Consensus 568 gLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd----~~ddvrr~Avl~LGlI~~g 643 (1003)
+.+++|..|+||+|.+....+|+..++. .++++-|+.++|||.+++|
T Consensus 507 -----------------------------asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g 557 (881)
T COG5110 507 -----------------------------ASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYG 557 (881)
T ss_pred -----------------------------HHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcc
Confidence 4455666777999999999999998874 3567889999999999999
Q ss_pred CCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-HHhhhcC---CC----hhHHHHHHHHHHHHHhccccc
Q 001859 644 EPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLTS---DV----VDFVRQGALIAMAMVMVQINE 715 (1003)
Q Consensus 644 ~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-lL~~l~~---D~----dd~Vrq~AiiALGlI~~gt~~ 715 (1003)
..++++.+++.++..+.+..|..-.+.=||.|+|||+..+|+ +|+.+.+ |. +..+..-|+++.++|.+|..-
T Consensus 558 ~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedi 637 (881)
T COG5110 558 RKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDI 637 (881)
T ss_pred ccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchh
Confidence 999999999999999999999999999999999999999997 8886654 22 345677899999999999876
Q ss_pred cccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEE
Q 001859 716 ANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTI 761 (1003)
Q Consensus 716 a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~ti 761 (1003)
+. ++ .+|++.+.+ ++.+++.|-.+++|+||+......|.+
T Consensus 638 g~--eM--vlRhf~h~m--hyg~~hiR~~~PLa~gils~SnPQm~v 677 (881)
T COG5110 638 GS--EM--VLRHFSHSM--HYGSSHIRSVLPLAYGILSPSNPQMNV 677 (881)
T ss_pred hH--HH--HHHHhhhHh--hcCcHHHHHHHHHHHhcccCCCcchHH
Confidence 53 24 578888776 788889999999999999888887744
No 9
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.6e-15 Score=182.82 Aligned_cols=398 Identities=21% Similarity=0.246 Sum_probs=261.9
Q ss_pred hhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHh-HHHHHHhhcccCCch
Q 001859 409 RATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEG-IKQFLRDSLRSTNVE 487 (1003)
Q Consensus 409 k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~-al~~L~~~L~~~~~~ 487 (1003)
.-+.|+-|-...+.|+=-.-. .+. +=..|+--++. . .....-||-++|||| .||-.. ..-.+-+||.. .++
T Consensus 814 ~~teWp~FhngVa~GLrIsp~-~~~--Ids~WI~fnkp-~-~~~a~haGfl~glGL--nGhL~~L~~~~i~qyls~-~h~ 885 (1496)
T KOG1858|consen 814 ELTEWPEFHNGVASGLRISPF-ATE--IDSSWIVFNKP-K-ELTAEHAGFLFGLGL--NGHLKALNTWHIYQYLSP-KHE 885 (1496)
T ss_pred ccccchhhHHHHHhhcccCcc-ccc--ccceeEEEecC-C-Ccchheeheeeeccc--ccccccccHHHHHHHccC-CCc
Confidence 457899997776666522111 111 11335533311 1 355667999999998 344321 12223456654 678
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcC--C--------ChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhh----
Q 001859 488 VIQHGACLGLGLAALGTADEDIYDDIKNVLYT--D--------SAVAGEAAGISMGLLMVGTASEKAG-EMLTYAH---- 552 (1003)
Q Consensus 488 ~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~--D--------s~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~---- 552 (1003)
.+-+|-+||++.+|.||.|..+...|.-+|.. . +....-||..||||.|.||++..+. .|+.-+.
T Consensus 886 ~tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~ 965 (1496)
T KOG1858|consen 886 MTSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPN 965 (1496)
T ss_pred ceeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999998887632 1 1123447889999999999999888 4444221
Q ss_pred -h--cCchhHHHHHHHHHhHhccCChhhH---------HHHHHHHh-------------------------cCCChhhHH
Q 001859 553 -E--TQHEKIIRGLALGIALTVYGREEEA---------DTLIEQMT-------------------------RDQDPILRY 595 (1003)
Q Consensus 553 -e--t~~e~i~r~~algLgLl~~G~~e~a---------d~lie~L~-------------------------~~~d~i~R~ 595 (1003)
| +++|.+.+.+.++|||+++|+..-. +.+..-|. ..+-.+...
T Consensus 966 ~e~~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~p 1045 (1496)
T KOG1858|consen 966 PENVLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAP 1045 (1496)
T ss_pred cccchhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCc
Confidence 2 3578899999999999999975432 22222222 001122355
Q ss_pred HHHHHHHHhhcCCCCHHHHHHH----HHHHhcCCChhHHHHHHHHHhhhcCCCC--------CChHHHHHHHhhc-CC--
Q 001859 596 GGMYALALAYSGTANNKAIRQL----LHFAVSDVSDDVRRTAVLALGFVLYSEP--------EQTPRIVSLLSES-YN-- 660 (1003)
Q Consensus 596 ~a~~alglAyaGTGn~~aI~~L----L~~~vsd~~ddvrr~Avl~LGlI~~g~~--------e~v~~ll~~L~~s-~n-- 660 (1003)
|++++++|.|..|+|..+...| -++..+-.-+|.--..++|.++|++.+- .++|.++..-..+ ++
T Consensus 1046 GAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~dvd 1125 (1496)
T KOG1858|consen 1046 GAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQEDVD 1125 (1496)
T ss_pred cHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhhhh
Confidence 9999999999999997766643 1222222345666677899999998852 3555555322211 11
Q ss_pred --------chhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCC-----------Chh--------HHHHHHHHHHHHHhccc
Q 001859 661 --------PHVRYGAALAVGISCAGTGLSEAISLLEPLTSD-----------VVD--------FVRQGALIAMAMVMVQI 713 (1003)
Q Consensus 661 --------p~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D-----------~dd--------~Vrq~AiiALGlI~~gt 713 (1003)
-.+=.|+++++|+-+|||||..+-++|+....| .+. -.-+--++++++|++|.
T Consensus 1126 ~~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vmagS 1205 (1496)
T KOG1858|consen 1126 LETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMAGS 1205 (1496)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHhhc
Confidence 135678999999999999999998866553221 011 11233568888888888
Q ss_pred cccccchHHHHHHHHHHHHhhhcCChhhHHH----HHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHH-------
Q 001859 714 NEANDSRVGTFRRQLEKIILDKHEDTMSKMG----AILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFS------- 782 (1003)
Q Consensus 714 ~~a~~pkva~~lr~L~~~~~~~~~d~~~rfg----a~lAqGLl~aGg~n~tisl~s~~~~~~~~a~vGll~f~------- 782 (1003)
.+-. |-..+|.|....+ .+++.++| +.+|+||+.+|+|..||+- +..+|+.+++-+
T Consensus 1206 gdle---Vlr~~r~Lr~~~~---~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~-------s~~sIa~ll~slfp~fP~~ 1272 (1496)
T KOG1858|consen 1206 GDLE---VLRRLRFLRSRTS---PYGHMNYGAQMATHMALGILFLGGGRYTIST-------SNLSIAALLISLFPHFPIS 1272 (1496)
T ss_pred CchH---HHHHHHHHHHhcc---CCCcccchhHHHHHHhhceeEecCcccccCC-------CcHHHHHHHHHhCCCCCCC
Confidence 7753 5555555554332 22344444 5789999999999999984 346777776544
Q ss_pred ---HhHhHHHHHHHHhhccCCcEEEeccCCCCCCe-EEEeeCCCCCCCC
Q 001859 783 ---QFWYWYPLIYFISLSFSPTALIGLNYDLKVPR-FEFLSHAKPSLFE 827 (1003)
Q Consensus 783 ---q~~yw~pl~~~lsla~~P~~li~ld~~l~~p~-~~~~~~~~~~~f~ 827 (1003)
+-.|..++-|+.++|+.||++|..|-|...|- ..+...-|+.+-.
T Consensus 1273 ~~Dnr~hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k~~~~~ 1321 (1496)
T KOG1858|consen 1273 PSDNRYHLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQKGTTLY 1321 (1496)
T ss_pred CcccHHHHHHHHHHHHHhcccccccccccccCceEEEeeeEEecccchh
Confidence 23456799999999999999999999999996 3555555555443
No 10
>PRK09687 putative lyase; Provisional
Probab=99.56 E-value=8.9e-13 Score=145.91 Aligned_cols=219 Identities=16% Similarity=0.173 Sum_probs=137.3
Q ss_pred HHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCc---hHHHHHHH
Q 001859 473 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS---EKAGEMLT 549 (1003)
Q Consensus 473 al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n---~~a~~LL~ 549 (1003)
.+..|.++|.+ .+..+|+.|+.+||.. | .++++..+...+.++++..+..|+.+||. +|... .++..+|.
T Consensus 24 ~~~~L~~~L~d-~d~~vR~~A~~aL~~~--~--~~~~~~~l~~ll~~~d~~vR~~A~~aLg~--lg~~~~~~~~a~~~L~ 96 (280)
T PRK09687 24 NDDELFRLLDD-HNSLKRISSIRVLQLR--G--GQDVFRLAIELCSSKNPIERDIGADILSQ--LGMAKRCQDNVFNILN 96 (280)
T ss_pred cHHHHHHHHhC-CCHHHHHHHHHHHHhc--C--cchHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCccchHHHHHHHH
Confidence 44556666665 4467777777777765 2 35677777777666666777777777774 45432 33443333
Q ss_pred -HhhhcCchhHHHHHHHHHhHhccCCh----hhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcC
Q 001859 550 -YAHETQHEKIIRGLALGIALTVYGRE----EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSD 624 (1003)
Q Consensus 550 -~~~et~~e~i~r~~algLgLl~~G~~----e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd 624 (1003)
.+.+..+..+++.++-+||-+.-+.. +.++. +..+..++++.+|+.++.++| ..|+..+|..|+..+ +|
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~-l~~~~~D~~~~VR~~a~~aLg----~~~~~~ai~~L~~~L-~d 170 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQ-SQITAFDKSTNVRFAVAFALS----VINDEAAIPLLINLL-KD 170 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccccccccchHHHHH-HHHHhhCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHh-cC
Confidence 33333455566666667776532211 11222 223344557777777776664 456677777777764 56
Q ss_pred CChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHH
Q 001859 625 VSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALI 704 (1003)
Q Consensus 625 ~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~Aii 704 (1003)
.+.+||..|+.+||.+..++++.++.++..| .+.|+.||..++.+||.+ ++..+|..|...+.|++ ||..|+.
T Consensus 171 ~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L-~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~~~~--~~~~a~~ 243 (280)
T PRK09687 171 PNGDVRNWAAFALNSNKYDNPDIREAFVAML-QDKNEEIRIEAIIGLALR----KDKRVLSVLIKELKKGT--VGDLIIE 243 (280)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHcc----CChhHHHHHHHHHcCCc--hHHHHHH
Confidence 6677888888888877555666666655544 677777888888887775 56777776666666655 6777777
Q ss_pred HHHHHhc
Q 001859 705 AMAMVMV 711 (1003)
Q Consensus 705 ALGlI~~ 711 (1003)
|||-++-
T Consensus 244 ALg~ig~ 250 (280)
T PRK09687 244 AAGELGD 250 (280)
T ss_pred HHHhcCC
Confidence 7777654
No 11
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=5.1e-13 Score=147.78 Aligned_cols=246 Identities=14% Similarity=0.122 Sum_probs=189.6
Q ss_pred hhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCC-CHHHHHHH
Q 001859 435 SLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA-DEDIYDDI 513 (1003)
Q Consensus 435 ~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~-~e~~~e~L 513 (1003)
..|.++|... +..++..|+.+|+.+.. +.++..+...+.+ .+..+|..|+-+||.++.... .+.++..|
T Consensus 26 ~~L~~~L~d~------d~~vR~~A~~aL~~~~~---~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L 95 (280)
T PRK09687 26 DELFRLLDDH------NSLKRISSIRVLQLRGG---QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRCQDNVFNIL 95 (280)
T ss_pred HHHHHHHhCC------CHHHHHHHHHHHHhcCc---chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 3445556542 66789999999998865 5688888887776 568999999999999753221 25788888
Q ss_pred HHhhcCC-ChhhHHHHHHHHhhhhcCCCc----hHHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcC
Q 001859 514 KNVLYTD-SAVAGEAAGISMGLLMVGTAS----EKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD 588 (1003)
Q Consensus 514 ~~~L~~D-s~~~~e~AalALGLI~~Gs~n----~~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~ 588 (1003)
...+..| ++.++..|+.+||- +|+.. ..+.+.+..+....+..+++.++.+|| .+|.+++++.++..|. +
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~--~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg--~~~~~~ai~~L~~~L~-d 170 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGH--RCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS--VINDEAAIPLLINLLK-D 170 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhc--ccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHhc-C
Confidence 8874444 56788899999994 45432 233433332222336678888878776 5688999999998886 6
Q ss_pred CChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHH
Q 001859 589 QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAA 668 (1003)
Q Consensus 589 ~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaa 668 (1003)
+++.+|+.+++++|-. +.++..++..|++.+ .|.+++||..|+.+||.+ ++++.++.+++.|. + +.+|+.++
T Consensus 171 ~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L-~D~~~~VR~~A~~aLg~~--~~~~av~~Li~~L~-~--~~~~~~a~ 242 (280)
T PRK09687 171 PNGDVRNWAAFALNSN--KYDNPDIREAFVAML-QDKNEEIRIEAIIGLALR--KDKRVLSVLIKELK-K--GTVGDLII 242 (280)
T ss_pred CCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHcc--CChhHHHHHHHHHc-C--CchHHHHH
Confidence 7889999999877644 777888888877765 788999999999999986 88999999998874 3 44899999
Q ss_pred HHHHHHhcCCCcHHHHHHHhhhcC-CChhHHHHHHHHHHH
Q 001859 669 LAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMA 707 (1003)
Q Consensus 669 lALGl~~aGtg~~~aIdlL~~l~~-D~dd~Vrq~AiiALG 707 (1003)
-|||-+ |.+.++..|..+.+ ++|..|++-|+.++.
T Consensus 243 ~ALg~i----g~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 243 EAAGEL----GDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhc----CCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 999998 77899998888886 889999999998774
No 12
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=1.3e-10 Score=147.44 Aligned_cols=289 Identities=18% Similarity=0.112 Sum_probs=203.9
Q ss_pred cchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHH
Q 001859 411 TNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQ 490 (1003)
Q Consensus 411 ~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr 490 (1003)
.-|.++.++..| ++ ..+..|..+|.. .++.++..|+.+||-+.. ..++..|...|.+ ++..||
T Consensus 607 ~~~~~~~~~~~l-----~~--~~~~~L~~~L~D------~d~~VR~~Av~~L~~~~~---~~~~~~L~~aL~D-~d~~VR 669 (897)
T PRK13800 607 PPSPRILAVLAL-----DA--PSVAELAPYLAD------PDPGVRRTAVAVLTETTP---PGFGPALVAALGD-GAAAVR 669 (897)
T ss_pred CchHHHHHHHhc-----cc--hhHHHHHHHhcC------CCHHHHHHHHHHHhhhcc---hhHHHHHHHHHcC-CCHHHH
Confidence 456666555555 22 244556667754 378899999999998754 5578888888876 568899
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcCchhHHHHHHHHHhHh
Q 001859 491 HGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALT 570 (1003)
Q Consensus 491 ~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~~e~i~r~~algLgLl 570 (1003)
..|+-+|+.+.-... ....|...|.++++.++..|+.+||.+. .++.. .+++.+ ...+..+++.++.+|+-+
T Consensus 670 ~~Aa~aL~~l~~~~~---~~~~L~~~L~~~d~~VR~~A~~aL~~~~--~~~~~--~l~~~L-~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 670 RAAAEGLRELVEVLP---PAPALRDHLGSPDPVVRAAALDVLRALR--AGDAA--LFAAAL-GDPDHRVRIEAVRALVSV 741 (897)
T ss_pred HHHHHHHHHHHhccC---chHHHHHHhcCCCHHHHHHHHHHHHhhc--cCCHH--HHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 999999987732211 1245666676677778888888988653 33332 333433 344556777777777753
Q ss_pred ccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHH
Q 001859 571 VYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPR 650 (1003)
Q Consensus 571 ~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ 650 (1003)
+.. +.++ .+..++++.+|..++- +++..|++...++..|++. ..|.+..||..|+.+||-+ ++++.+..
T Consensus 742 --~~~---~~l~-~~l~D~~~~VR~~aa~--aL~~~~~~~~~~~~~L~~l-l~D~d~~VR~aA~~aLg~~--g~~~~~~~ 810 (897)
T PRK13800 742 --DDV---ESVA-GAATDENREVRIAVAK--GLATLGAGGAPAGDAVRAL-TGDPDPLVRAAALAALAEL--GCPPDDVA 810 (897)
T ss_pred --cCc---HHHH-HHhcCCCHHHHHHHHH--HHHHhccccchhHHHHHHH-hcCCCHHHHHHHHHHHHhc--CCcchhHH
Confidence 332 3444 4566788999988765 5566787777667777765 4677899999999999977 76665533
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Q 001859 651 IVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEK 730 (1003)
Q Consensus 651 ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~ 730 (1003)
.+...+.+.++.||++++-+||.+ |..+++..|.++++|++..||+.|+.+||-+. +. |.. +..|.+
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~-----~~a---~~~L~~ 877 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAAVLALTRWP-GD-----PAA---RDALTT 877 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhccC-CC-----HHH---HHHHHH
Confidence 344455778899999999999987 67889999999999999999999999999861 22 223 233344
Q ss_pred HHhhhcCChhhHHHHHHHhh
Q 001859 731 IILDKHEDTMSKMGAILASG 750 (1003)
Q Consensus 731 ~~~~~~~d~~~rfga~lAqG 750 (1003)
.+ ++.|+.+|-.++.|++
T Consensus 878 al--~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 878 AL--TDSDADVRAYARRALA 895 (897)
T ss_pred HH--hCCCHHHHHHHHHHHh
Confidence 44 3688999999988875
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.23 E-value=7.4e-10 Score=140.60 Aligned_cols=266 Identities=20% Similarity=0.110 Sum_probs=192.2
Q ss_pred hhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCC
Q 001859 406 WLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTN 485 (1003)
Q Consensus 406 Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~ 485 (1003)
.|....-..|..|+.+||-+.. .+.+..|...|.. .+..++..|+.+|+.+..+. +....|...|.+ .
T Consensus 629 ~L~D~d~~VR~~Av~~L~~~~~---~~~~~~L~~aL~D------~d~~VR~~Aa~aL~~l~~~~--~~~~~L~~~L~~-~ 696 (897)
T PRK13800 629 YLADPDPGVRRTAVAVLTETTP---PGFGPALVAALGD------GAAAVRRAAAEGLRELVEVL--PPAPALRDHLGS-P 696 (897)
T ss_pred HhcCCCHHHHHHHHHHHhhhcc---hhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcc--CchHHHHHHhcC-C
Confidence 4444455578899999998753 3455666666643 36788999999998874322 123455566776 5
Q ss_pred chhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcCchhHHHHHHH
Q 001859 486 VEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLAL 565 (1003)
Q Consensus 486 ~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~~e~i~r~~al 565 (1003)
+..+|..|+..||....+. ...|...|..+++..+..|+.+||-+ +. .+ .|+.. ...++..+++.++.
T Consensus 697 d~~VR~~A~~aL~~~~~~~-----~~~l~~~L~D~d~~VR~~Av~aL~~~--~~--~~--~l~~~-l~D~~~~VR~~aa~ 764 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-----AALFAAALGDPDHRVRIEAVRALVSV--DD--VE--SVAGA-ATDENREVRIAVAK 764 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-----HHHHHHHhcCCCHHHHHHHHHHHhcc--cC--cH--HHHHH-hcCCCHHHHHHHHH
Confidence 6899999999999876443 23566677666778888999999954 33 22 33333 34457788888888
Q ss_pred HHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHH-HHHHHHHHhcCCChhHHHHHHHHHhhhcCCC
Q 001859 566 GIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKA-IRQLLHFAVSDVSDDVRRTAVLALGFVLYSE 644 (1003)
Q Consensus 566 gLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~a-I~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~ 644 (1003)
+||-+.-+.....+.+. .+..++|+.+|..++-++| ..|+... +..|++. .+|.+..||+.|+.+||.+ +.
T Consensus 765 aL~~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~aLg----~~g~~~~~~~~l~~a-L~d~d~~VR~~Aa~aL~~l--~~ 836 (897)
T PRK13800 765 GLATLGAGGAPAGDAVR-ALTGDPDPLVRAAALAALA----ELGCPPDDVAAATAA-LRASAWQVRQGAARALAGA--AA 836 (897)
T ss_pred HHHHhccccchhHHHHH-HHhcCCCHHHHHHHHHHHH----hcCCcchhHHHHHHH-hcCCChHHHHHHHHHHHhc--cc
Confidence 88866333333345555 5556788999999887766 3354443 4555554 5777888999999999977 77
Q ss_pred CCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 001859 645 PEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMA 707 (1003)
Q Consensus 645 ~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALG 707 (1003)
++.++.++..| .+.++.||..++.+||.. .+++.+.+.|..+++|.|.+||+.|..||.
T Consensus 837 ~~a~~~L~~~L-~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 DVAVPALVEAL-TDPHLDVRKAAVLALTRW---PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred cchHHHHHHHh-cCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77777766655 788999999999999986 367889999999999999999999999986
No 14
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.81 E-value=1.2e-06 Score=102.04 Aligned_cols=222 Identities=16% Similarity=0.074 Sum_probs=153.6
Q ss_pred HHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcC
Q 001859 459 LYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVG 538 (1003)
Q Consensus 459 l~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~G 538 (1003)
+-+|.+++ ..++..|...|....+.-++..++++|+. ..+..+++.|...|..++..++.+++-+||.+
T Consensus 45 LdgL~~~G----~~a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--- 113 (410)
T TIGR02270 45 VDGLVLAG----KAATELLVSALAEADEPGRVACAALALLA----QEDALDLRSVLAVLQAGPEGLCAGIQAALGWL--- 113 (410)
T ss_pred HHHHHHhh----HhHHHHHHHHHhhCCChhHHHHHHHHHhc----cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcC---
Confidence 44555554 46888888888543446667777777753 23456689999999655666788899999965
Q ss_pred CCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHH
Q 001859 539 TASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQL 617 (1003)
Q Consensus 539 s~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~L 617 (1003)
++..+. .|+..+ +..+..+++...-++|. .+.+....++..|. +.++.+|..++-++| +.| ...++..|
T Consensus 114 -~~~~a~~~L~~~L-~~~~p~vR~aal~al~~---r~~~~~~~L~~~L~-d~d~~Vra~A~raLG--~l~--~~~a~~~L 183 (410)
T TIGR02270 114 -GGRQAEPWLEPLL-AASEPPGRAIGLAALGA---HRHDPGPALEAALT-HEDALVRAAALRALG--ELP--RRLSESTL 183 (410)
T ss_pred -CchHHHHHHHHHh-cCCChHHHHHHHHHHHh---hccChHHHHHHHhc-CCCHHHHHHHHHHHH--hhc--cccchHHH
Confidence 345566 555544 34455555443333333 34556667776665 889999999887765 444 45566666
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhH
Q 001859 618 LHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDF 697 (1003)
Q Consensus 618 L~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~ 697 (1003)
.. +..|.++.||+.|+.+++.+ |.++...-++. +....++.++...+.++++. |.+.+++.|..++.|+.
T Consensus 184 ~~-al~d~~~~VR~aA~~al~~l--G~~~A~~~l~~-~~~~~g~~~~~~l~~~lal~----~~~~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 184 RL-YLRDSDPEVRFAALEAGLLA--GSRLAWGVCRR-FQVLEGGPHRQRLLVLLAVA----GGPDAQAWLRELLQAAA-- 253 (410)
T ss_pred HH-HHcCCCHHHHHHHHHHHHHc--CCHhHHHHHHH-HHhccCccHHHHHHHHHHhC----CchhHHHHHHHHhcChh--
Confidence 64 46788999999999999877 88766655444 33445566666666666665 77799999999999865
Q ss_pred HHHHHHHHHHHHhc
Q 001859 698 VRQGALIAMAMVMV 711 (1003)
Q Consensus 698 Vrq~AiiALGlI~~ 711 (1003)
||..++.++|.++-
T Consensus 254 vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 254 TRREALRAVGLVGD 267 (410)
T ss_pred hHHHHHHHHHHcCC
Confidence 99999999997764
No 15
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.81 E-value=5.9e-07 Score=104.60 Aligned_cols=220 Identities=18% Similarity=0.159 Sum_probs=157.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhcC-CChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhc
Q 001859 494 CLGLGLAALGTADEDIYDDIKNVLYT-DSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTV 571 (1003)
Q Consensus 494 ~LGLGla~~Gs~~e~~~e~L~~~L~~-Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~ 571 (1003)
+=||.+++ +.+++.|...+.. ++......|+++|+ +..+..++ .++..+ +...+.+++.++-+||.
T Consensus 45 LdgL~~~G-----~~a~~~L~~aL~~d~~~ev~~~aa~al~----~~~~~~~~~~L~~~L-~d~~~~vr~aaa~ALg~-- 112 (410)
T TIGR02270 45 VDGLVLAG-----KAATELLVSALAEADEPGRVACAALALL----AQEDALDLRSVLAVL-QAGPEGLCAGIQAALGW-- 112 (410)
T ss_pred HHHHHHhh-----HhHHHHHHHHHhhCCChhHHHHHHHHHh----ccCChHHHHHHHHHh-cCCCHHHHHHHHHHHhc--
Confidence 66776653 5788999999843 33444445666655 33444545 666644 44567799999999986
Q ss_pred cCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHH
Q 001859 572 YGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRI 651 (1003)
Q Consensus 572 ~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~l 651 (1003)
+|.++....++..| .+++|.+|+.++-++| ..+-. ....|+..+ +|.+..||+.|+-+||.+ +..+.++.+
T Consensus 113 i~~~~a~~~L~~~L-~~~~p~vR~aal~al~--~r~~~---~~~~L~~~L-~d~d~~Vra~A~raLG~l--~~~~a~~~L 183 (410)
T TIGR02270 113 LGGRQAEPWLEPLL-AASEPPGRAIGLAALG--AHRHD---PGPALEAAL-THEDALVRAAALRALGEL--PRRLSESTL 183 (410)
T ss_pred CCchHHHHHHHHHh-cCCChHHHHHHHHHHH--hhccC---hHHHHHHHh-cCCCHHHHHHHHHHHHhh--ccccchHHH
Confidence 57788888888777 5678999988774444 44432 344555543 588899999999999988 778888876
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Q 001859 652 VSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKI 731 (1003)
Q Consensus 652 l~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~ 731 (1003)
. ....+.||.||.+++.+++.+ |...+++.|..+..++...+++.+..++++. |.+ ++...++ .+
T Consensus 184 ~-~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~-----~a~~~L~---~l 248 (410)
T TIGR02270 184 R-LYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP-----DAQAWLR---EL 248 (410)
T ss_pred H-HHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch-----hHHHHHH---HH
Confidence 6 457899999999999999998 5689999888877788888877777777765 332 2333333 33
Q ss_pred HhhhcCChhhHHHHHHHhhhhc
Q 001859 732 ILDKHEDTMSKMGAILASGILD 753 (1003)
Q Consensus 732 ~~~~~~d~~~rfga~lAqGLl~ 753 (1003)
+ +|+.++..+..|+|.+.
T Consensus 249 l----~d~~vr~~a~~AlG~lg 266 (410)
T TIGR02270 249 L----QAAATRREALRAVGLVG 266 (410)
T ss_pred h----cChhhHHHHHHHHHHcC
Confidence 3 45679999999999853
No 16
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.77 E-value=1.3e-06 Score=98.55 Aligned_cols=249 Identities=22% Similarity=0.230 Sum_probs=169.1
Q ss_pred hHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHH
Q 001859 472 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTY 550 (1003)
Q Consensus 472 ~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~ 550 (1003)
++...+.+.+.+. +..+|++|...+|.. .+++++..|...+...+...+..|+.+||- -++++++ .|+.+
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~----~~~~av~~l~~~l~d~~~~vr~~a~~aLg~----~~~~~a~~~li~~ 113 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGEL----GSEEAVPLLRELLSDEDPRVRDAAADALGE----LGDPEAVPPLVEL 113 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhh----chHHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCChhHHHHHHHH
Confidence 4666777777764 578888888887765 346788888888865566677788888883 3556666 66666
Q ss_pred hhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCC---------Ch--hhHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 001859 551 AHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQ---------DP--ILRYGGMYALALAYSGTANNKAIRQLLH 619 (1003)
Q Consensus 551 ~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~---------d~--i~R~~a~~alglAyaGTGn~~aI~~LL~ 619 (1003)
+....+..+++.++.+||. +|.+..+..+++.+.... .+ ..|..++.+++ ..|+..++..|..
T Consensus 114 l~~d~~~~vR~~aa~aL~~--~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~----~~~~~~~~~~l~~ 187 (335)
T COG1413 114 LENDENEGVRAAAARALGK--LGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG----ELGDPEAIPLLIE 187 (335)
T ss_pred HHcCCcHhHHHHHHHHHHh--cCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH----HcCChhhhHHHHH
Confidence 5554567777777776664 466677888888777644 12 34655555544 4677778887777
Q ss_pred HHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHH
Q 001859 620 FAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVR 699 (1003)
Q Consensus 620 ~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vr 699 (1003)
.+ ++.+.+||+.|+.+||.+...+.+..+. +.....+.+..+|+.++.+||.. |...++..|.....+.+..++
T Consensus 188 ~l-~~~~~~vr~~Aa~aL~~~~~~~~~~~~~-l~~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~~~~~~ 261 (335)
T COG1413 188 LL-EDEDADVRRAAASALGQLGSENVEAADL-LVKALSDESLEVRKAALLALGEI----GDEEAVDALAKALEDEDVILA 261 (335)
T ss_pred HH-hCchHHHHHHHHHHHHHhhcchhhHHHH-HHHHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhccchHHH
Confidence 64 5666789999999999885544344444 44566788888999999999887 788888888888888888888
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhc
Q 001859 700 QGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 753 (1003)
Q Consensus 700 q~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 753 (1003)
..+..+++.+. .... . -.+...+ .+.+...++-+..++|.+.
T Consensus 262 ~~~~~~~~~~~--~~~~----~----~~l~~~~--~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 262 LLAAAALGALD--LAEA----A----LPLLLLL--IDEANAVRLEAALALGQIG 303 (335)
T ss_pred HHHHHHhcccC--chhh----H----HHHHHHh--hcchhhHHHHHHHHHHhhc
Confidence 88887777221 1111 1 1122222 3556666777776666643
No 17
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.69 E-value=1.8e-06 Score=97.55 Aligned_cols=217 Identities=26% Similarity=0.316 Sum_probs=165.8
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHh
Q 001859 507 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT 586 (1003)
Q Consensus 507 e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~ 586 (1003)
+...+.+...+.+.+...+..|+..+|.+ ++.+++..+..+.......+++.++.+|| .+|.++.++.+++.|.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~----~~~~av~~l~~~l~d~~~~vr~~a~~aLg--~~~~~~a~~~li~~l~ 115 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL----GSEEAVPLLRELLSDEDPRVRDAAADALG--ELGDPEAVPPLVELLE 115 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh----chHHHHHHHHHHhcCCCHHHHHHHHHHHH--ccCChhHHHHHHHHHH
Confidence 35667777777555677788888888844 55677755554555556677777777555 6789999999999999
Q ss_pred cCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCC---------Ch--hHHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001859 587 RDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV---------SD--DVRRTAVLALGFVLYSEPEQTPRIVSLL 655 (1003)
Q Consensus 587 ~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~---------~d--dvrr~Avl~LGlI~~g~~e~v~~ll~~L 655 (1003)
.+.+..+|..++.++| +.|+..++..|+....... .. .+|..++.+||.+ ++++.++.+++.+
T Consensus 116 ~d~~~~vR~~aa~aL~----~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~--~~~~~~~~l~~~l 189 (335)
T COG1413 116 NDENEGVRAAAARALG----KLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL--GDPEAIPLLIELL 189 (335)
T ss_pred cCCcHhHHHHHHHHHH----hcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--CChhhhHHHHHHH
Confidence 8889999999988776 7788888999999865433 11 5789999999977 9999988888866
Q ss_pred hhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhh
Q 001859 656 SESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDK 735 (1003)
Q Consensus 656 ~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~ 735 (1003)
.+.+..||+.++.+||.+.. .+..+...|.+..+|++..||..++.++|-++..... ..+ ...+ +
T Consensus 190 -~~~~~~vr~~Aa~aL~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~------~~l----~~~l--~ 254 (335)
T COG1413 190 -EDEDADVRRAAASALGQLGS--ENVEAADLLVKALSDESLEVRKAALLALGEIGDEEAV------DAL----AKAL--E 254 (335)
T ss_pred -hCchHHHHHHHHHHHHHhhc--chhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhH------HHH----HHHH--h
Confidence 55666999999999999943 3357778999999999999999999999998875432 222 2333 3
Q ss_pred cCChhhHHHHHHHhh
Q 001859 736 HEDTMSKMGAILASG 750 (1003)
Q Consensus 736 ~~d~~~rfga~lAqG 750 (1003)
..+...+.....+.|
T Consensus 255 ~~~~~~~~~~~~~~~ 269 (335)
T COG1413 255 DEDVILALLAAAALG 269 (335)
T ss_pred ccchHHHHHHHHHhc
Confidence 567777777777777
No 18
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.57 E-value=6.7e-06 Score=88.84 Aligned_cols=224 Identities=20% Similarity=0.282 Sum_probs=142.9
Q ss_pred hHHHHHhhhhccchHhHHHHHHhhcccC-CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCC-hhhHHHHHHHHhh
Q 001859 457 GALYALGLIHANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDS-AVAGEAAGISMGL 534 (1003)
Q Consensus 457 GAl~ALGLI~~g~~~~al~~L~~~L~~~-~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds-~~~~e~AalALGL 534 (1003)
-..|.||-.. ...++..|.+.|... ....|||-|.-+||-++ +.++.+.|.++. +|. ..+++..-+|+.-
T Consensus 55 e~ay~LgQ~~---~~~Av~~l~~vl~desq~pmvRhEAaealga~~----~~~~~~~l~k~~-~dp~~~v~ETc~lAi~r 126 (289)
T KOG0567|consen 55 ELAYVLGQMQ---DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----DPESLEILTKYI-KDPCKEVRETCELAIKR 126 (289)
T ss_pred chhhhhhhhc---cchhhHHHHHHhcccccchHHHHHHHHHHHhhc----chhhHHHHHHHh-cCCccccchHHHHHHHH
Confidence 3455555332 245666666665543 23566777777777653 355666666665 332 2344444455553
Q ss_pred hhcCCCchHHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHh-cCCChhhHHHHHHHHHHhhcCCCCHHH
Q 001859 535 LMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT-RDQDPILRYGGMYALALAYSGTANNKA 613 (1003)
Q Consensus 535 I~~Gs~n~~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~-~~~d~i~R~~a~~alglAyaGTGn~~a 613 (1003)
+--+.+-........|..-....+ . +...+..+-..|. ..+.-+-||.++|.+- .-|..++
T Consensus 127 le~~~~~~~~~~~~p~~SvdPa~p-----------~---~~ssv~~lr~~lld~t~~l~~Ry~amF~LR----n~g~Eea 188 (289)
T KOG0567|consen 127 LEWKDIIDKIANSSPYISVDPAPP-----------A---NLSSVHELRAELLDETKPLFERYRAMFYLR----NIGTEEA 188 (289)
T ss_pred HHHhhccccccccCccccCCCCCc-----------c---ccccHHHHHHHHHhcchhHHHHHhhhhHhh----ccCcHHH
Confidence 322221111100111111000000 0 0111222333333 3445688999988765 7788999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh-cCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcC
Q 001859 614 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE-SYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS 692 (1003)
Q Consensus 614 I~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~-s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~ 692 (1003)
|..|..-.. +.+.-+|--++..+|-+ +++..++.+.+.|.. ..+|.||.-++.|||-+ ++.+++++|..+++
T Consensus 189 I~al~~~l~-~~SalfrhEvAfVfGQl--~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI----a~e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 189 INALIDGLA-DDSALFRHEVAFVFGQL--QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAI----ADEDCVEVLKEYLG 261 (289)
T ss_pred HHHHHHhcc-cchHHHHHHHHHHHhhc--cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhh----cCHHHHHHHHHHcC
Confidence 999988754 34677888888888866 889999999987764 67999999999999998 89999999999999
Q ss_pred CChhHHHHHHHHHHHHHhccc
Q 001859 693 DVVDFVRQGALIAMAMVMVQI 713 (1003)
Q Consensus 693 D~dd~Vrq~AiiALGlI~~gt 713 (1003)
|+++-||.++.+||-|.--.+
T Consensus 262 D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 262 DEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987644
No 19
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.3e-07 Score=114.28 Aligned_cols=230 Identities=25% Similarity=0.353 Sum_probs=149.9
Q ss_pred CCCchhhHHHHHhhhhccchH-hHHHHHHhhccc----C-----CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCC
Q 001859 451 SPYSEGGALYALGLIHANHGE-GIKQFLRDSLRS----T-----NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTD 520 (1003)
Q Consensus 451 ~~y~k~GAl~ALGLI~~g~~~-~al~~L~~~L~~----~-----~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~D 520 (1003)
.+.+--|-|+|++.-|-|..| +....|.=||.. + -+-.++.+|++|+|+.|.||++..+.+.|..-+...
T Consensus 884 h~~tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~ 963 (1496)
T KOG1858|consen 884 HEMTSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRP 963 (1496)
T ss_pred CcceeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCC
Confidence 677888999999999998876 455555555542 1 126899999999999999999998888888766332
Q ss_pred ----ChhhHH----HHHHHHhhhhcCCCchHHH--------HHHHHhh------------------------hcC-chhH
Q 001859 521 ----SAVAGE----AAGISMGLLMVGTASEKAG--------EMLTYAH------------------------ETQ-HEKI 559 (1003)
Q Consensus 521 ----s~~~~e----~AalALGLI~~Gs~n~~a~--------~LL~~~~------------------------et~-~e~i 559 (1003)
+.+.+| +|+++||||++|.|+.-+- .|+.|+. ++. -+--
T Consensus 964 ~~~e~~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~ 1043 (1496)
T KOG1858|consen 964 PNPENVLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVT 1043 (1496)
T ss_pred CCcccchhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecC
Confidence 223444 7999999999999875321 4555554 111 1222
Q ss_pred HHHHHHHHhHhccCC--hhhHHH--------HHHHHh---------------------------cCCChhh---------
Q 001859 560 IRGLALGIALTVYGR--EEEADT--------LIEQMT---------------------------RDQDPIL--------- 593 (1003)
Q Consensus 560 ~r~~algLgLl~~G~--~e~ad~--------lie~L~---------------------------~~~d~i~--------- 593 (1003)
..|++++||++|+.. ..-++. +++.++ ..=++++
T Consensus 1044 ~pGAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~d 1123 (1496)
T KOG1858|consen 1044 APGAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQED 1123 (1496)
T ss_pred CccHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhh
Confidence 559999999998872 111111 011000 0001111
Q ss_pred -------------HHHHHHHHHHhhcCCCCHHHHHHHHHHHhcC----------CChh--------HHHHHHHHHhhhcC
Q 001859 594 -------------RYGGMYALALAYSGTANNKAIRQLLHFAVSD----------VSDD--------VRRTAVLALGFVLY 642 (1003)
Q Consensus 594 -------------R~~a~~alglAyaGTGn~~aI~~LL~~~vsd----------~~dd--------vrr~Avl~LGlI~~ 642 (1003)
-.|+++++|+=||||||..+-.-|...+.+. .+++ .-+..+++++.|+.
T Consensus 1124 vd~~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vma 1203 (1496)
T KOG1858|consen 1124 VDLETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMA 1203 (1496)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHh
Confidence 2378899999999999987755444433211 1111 12456778888888
Q ss_pred CCCC-ChHHHHHHHhhcCC--chhhHHHH----HHHHHHhcCCCc
Q 001859 643 SEPE-QTPRIVSLLSESYN--PHVRYGAA----LAVGISCAGTGL 680 (1003)
Q Consensus 643 g~~e-~v~~ll~~L~~s~n--p~VR~gaa----lALGl~~aGtg~ 680 (1003)
|..+ .+.|.++.|..-.. +|++||.. +|||+...|.|.
T Consensus 1204 gSgdleVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr 1248 (1496)
T KOG1858|consen 1204 GSGDLEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGR 1248 (1496)
T ss_pred hcCchHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcc
Confidence 8764 58888887754333 68999866 678888888764
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.22 E-value=2.3e-06 Score=77.37 Aligned_cols=87 Identities=38% Similarity=0.479 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhc-C
Q 001859 614 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLT-S 692 (1003)
Q Consensus 614 I~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~-~ 692 (1003)
|..|++.+.++.+..+|..++..||-+ ++++.++.+++.+ ++.||.||+.++.+||.+ |++++++.|..+. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----~~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--GDPEAIPALIELL-KDEDPMVRRAAARALGRI----GDPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----HHHHTHHHHHHHHTC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcC
Confidence 456777776777888888888888844 6777777777766 778888888888888876 5788888666654 4
Q ss_pred CChhHHHHHHHHHHH
Q 001859 693 DVVDFVRQGALIAMA 707 (1003)
Q Consensus 693 D~dd~Vrq~AiiALG 707 (1003)
|++..||..|+-+||
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 456667888888776
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.05 E-value=1.6e-05 Score=71.87 Aligned_cols=88 Identities=33% Similarity=0.480 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001859 578 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 657 (1003)
Q Consensus 578 ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~ 657 (1003)
++.+++.|..++++.+|..++.++| ..|+..++..|++.+ +|.+..||+.|+.+||.+ |+++.++.+.+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i--~~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELL-KDEDPMVRRAAARALGRI--GDPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC--HHHHTHHHHHHHHTC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHcC
Confidence 3578888878999999999988887 778889999999987 788899999999999976 888899999998888
Q ss_pred cCCchhhHHHHHHHH
Q 001859 658 SYNPHVRYGAALAVG 672 (1003)
Q Consensus 658 s~np~VR~gaalALG 672 (1003)
+.+..||..++.|||
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 888899999999987
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.99 E-value=0.00095 Score=89.69 Aligned_cols=314 Identities=17% Similarity=0.097 Sum_probs=209.0
Q ss_pred hhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchH--------hHHHHHHhhcccCCchhHHHHHHHHHHHHhc
Q 001859 431 QQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE--------GIKQFLRDSLRSTNVEVIQHGACLGLGLAAL 502 (1003)
Q Consensus 431 ~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~--------~al~~L~~~L~~~~~~~vr~GA~LGLGla~~ 502 (1003)
.++...|-..|... +...+.-+..+|..+..++.+ .++..|.++|.+. +..+|.-|+..||.+..
T Consensus 403 ~daik~LV~LL~~~------~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~ 475 (2102)
T PLN03200 403 AEAKKVLVGLITMA------TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTD 475 (2102)
T ss_pred ccchhhhhhhhccC------CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 35666666666653 345666677777777665332 3788999999874 57888888999999876
Q ss_pred CCCC-------HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchH-------HH-HHHHHhhhcCchhHHHHHHHHH
Q 001859 503 GTAD-------EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-------AG-EMLTYAHETQHEKIIRGLALGI 567 (1003)
Q Consensus 503 Gs~~-------e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~-------a~-~LL~~~~et~~e~i~r~~algL 567 (1003)
|+.+ ..++..|.++|.+.+...++-|+.+||-+-.++.+.. ++ .|+..+ ++.+.+++.-++-+|
T Consensus 476 ~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL 554 (2102)
T PLN03200 476 EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTL 554 (2102)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 6542 1467888899987778888889999997654432211 12 334443 344677778888887
Q ss_pred hHhc-cCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhc-CCC---------CHHHHHHHHHHHhcCCChhHHHHHHHH
Q 001859 568 ALTV-YGREEEADTLIEQMTRDQDPILRYGGMYALALAYS-GTA---------NNKAIRQLLHFAVSDVSDDVRRTAVLA 636 (1003)
Q Consensus 568 gLl~-~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAya-GTG---------n~~aI~~LL~~~vsd~~ddvrr~Avl~ 636 (1003)
.-+. .|..+.+..+++.|..++ +-.+.-..-++|.... +.+ ++.+|..|.+.. ++.++.+++.|+-.
T Consensus 555 ~nLi~~~d~~~I~~Lv~LLlsdd-~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL-~sgs~~ikk~Aa~i 632 (2102)
T PLN03200 555 TKLVRTADAATISQLTALLLGDL-PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL-SSSKEETQEKAASV 632 (2102)
T ss_pred HHHHhccchhHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-cCCCHHHHHHHHHH
Confidence 7764 456677788887765544 3333333333332211 112 345777787775 45688999999999
Q ss_pred HhhhcCCCCC---------ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-cH--H-----HHHHHhhhcCCChhHHH
Q 001859 637 LGFVLYSEPE---------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTG-LS--E-----AISLLEPLTSDVVDFVR 699 (1003)
Q Consensus 637 LGlI~~g~~e---------~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg-~~--~-----aIdlL~~l~~D~dd~Vr 699 (1003)
|+-++-++++ .++.++.+| .+++..+|..++.||+-+..+.- +. . +|..|-.++++++..|+
T Consensus 633 LsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 633 LADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH
Confidence 9988887764 578888876 57778899999999987764332 21 1 23456677789999999
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCC
Q 001859 700 QGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 757 (1003)
Q Consensus 700 q~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 757 (1003)
..|+-||+.+.........-.-...+..|-+++ +..++..|-.|+-|+.-++-++.
T Consensus 712 e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL--r~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 712 EQAVCALANLLSDPEVAAEALAEDIILPLTRVL--REGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH--HhCChHHHHHHHHHHHHHHhCCC
Confidence 999999999987553321000112234555555 46778888888888776665554
No 23
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00057 Score=74.28 Aligned_cols=236 Identities=17% Similarity=0.178 Sum_probs=151.9
Q ss_pred hhhhHhhcchh----hHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHh
Q 001859 404 LDWLSRATNWA----KFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRD 479 (1003)
Q Consensus 404 l~Wl~k~~~w~----kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~ 479 (1003)
.+|++|+-... |-..+.+||= |-..+++..|..-|.-. +..+.++-.|..+||-+.. ...+.+|.+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ---~~~~~Av~~l~~vl~de----sq~pmvRhEAaealga~~~---~~~~~~l~k 107 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ---MQDEDAVPVLVEVLLDE----SQEPMVRHEAAEALGAIGD---PESLEILTK 107 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh---hccchhhHHHHHHhccc----ccchHHHHHHHHHHHhhcc---hhhHHHHHH
Confidence 35777766554 3355666654 44488888887766643 3467788889999999874 467889999
Q ss_pred hcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcCchhH
Q 001859 480 SLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKI 559 (1003)
Q Consensus 480 ~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~~e~i 559 (1003)
|.+++ -..|+--.-+++.-+-....-... ..-.+....|.+-. ..++ ++.+|-..+.+....-+
T Consensus 108 ~~~dp-~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa~p-----~~~s---------sv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 108 YIKDP-CKEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPAPP-----ANLS---------SVHELRAELLDETKPLF 171 (289)
T ss_pred HhcCC-ccccchHHHHHHHHHHHhhccccc-cccCccccCCCCCc-----cccc---------cHHHHHHHHHhcchhHH
Confidence 98543 245555555666554322210000 00111111111111 0111 12233332333334445
Q ss_pred HHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc-CCChhHHHHHHHHHh
Q 001859 560 IRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS-DVSDDVRRTAVLALG 638 (1003)
Q Consensus 560 ~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs-d~~ddvrr~Avl~LG 638 (1003)
.|..|+ ..|=..|.++++.++++.|..+ .+..|.-.+|++| --+...+|..|...+.+ ..+.-||.-|+-+||
T Consensus 172 ~Ry~am-F~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfG----Ql~s~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 172 ERYRAM-FYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFG----QLQSPAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred HHHhhh-hHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHh----hccchhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 555443 3555778899999999999876 8999999999988 45778889888888754 345679999999999
Q ss_pred hhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHH
Q 001859 639 FVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGIS 674 (1003)
Q Consensus 639 lI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~ 674 (1003)
.| ++++ |..+++..+.+..+.||-++..||-+.
T Consensus 246 aI--a~e~-~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 246 AI--ADED-CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hh--cCHH-HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 98 6655 566777788899999999999998765
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.89 E-value=0.16 Score=63.11 Aligned_cols=307 Identities=12% Similarity=0.036 Sum_probs=170.0
Q ss_pred hhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhh--ccchHhHHHHHHhhcccCCchhHHHHHHHHHHHH
Q 001859 423 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLA 500 (1003)
Q Consensus 423 G~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~--~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla 500 (1003)
.....|+.++++..+...+... .... .+.+.+|.++ .|..+.++..+.+.+....+. ..+...+|.+
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 644 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA------PDSP--EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS---ALALLLLADA 644 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHH
Confidence 3456788888888877766532 1122 2344445444 455578888888776542211 1234456666
Q ss_pred hcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhccCChhhH
Q 001859 501 ALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEA 578 (1003)
Q Consensus 501 ~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~~e~a 578 (1003)
+...++ +.+...+...+..+.... .+-+.++.++.-.++.+-. .++..+.+...........+|..+...|+-+.+
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence 544443 467777777664332222 1334444445545544433 666544433322223334455566667777777
Q ss_pred HHHHHHHhc-CCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001859 579 DTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 657 (1003)
Q Consensus 579 d~lie~L~~-~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~ 657 (1003)
....+.... .+++ ...+.++.+|...|+.......+..+.+...+++.-...++.-+...|+.+.+..+++.+.+
T Consensus 723 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 723 IQAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 666665443 3333 33455778888999987777777766665555555555555555566787778888877776
Q ss_pred cCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcC-CChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhc
Q 001859 658 SYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKH 736 (1003)
Q Consensus 658 s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~-D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~ 736 (1003)
.+.++.. +-..+|.++...|+.+++..+++... +|++. .....+|.+....++ ...-++.+.+.+....
T Consensus 799 ~~p~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~-----~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 799 KAPDNAV--VLNNLAWLYLELKDPRALEYAEKALKLAPNIP---AILDTLGWLLVEKGE-----ADRALPLLRKAVNIAP 868 (899)
T ss_pred hCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCC
Confidence 5543332 22334444445566889998887764 44432 123345665554433 3334555666654223
Q ss_pred CChhhHHHHHHHhhhhccCCCc
Q 001859 737 EDTMSKMGAILASGILDAGGRN 758 (1003)
Q Consensus 737 ~d~~~rfga~lAqGLl~aGg~n 758 (1003)
.++.+.+ .++..+...|...
T Consensus 869 ~~~~~~~--~l~~~~~~~g~~~ 888 (899)
T TIGR02917 869 EAAAIRY--HLALALLATGRKA 888 (899)
T ss_pred CChHHHH--HHHHHHHHcCCHH
Confidence 3444443 4566666666543
No 25
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0016 Score=77.24 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=168.5
Q ss_pred HHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCch---H
Q 001859 474 KQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE---K 543 (1003)
Q Consensus 474 l~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~---~ 543 (1003)
+..|.++|....+..++.-|+-+|--|..|+... .++-.|..++.+.+...++-|..|||-| +|.+.. -
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNI-agds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNI-AGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcc-ccCChHHHHH
Confidence 4455666665455788999999999998887643 4566788888888888999999999987 344311 1
Q ss_pred H-----H-HHHHHhhhcCchhHHHHHHHHHhHhccCCh-----hhHHHH---HHHHhcCCChhhHHHHHHHHHHhhcCCC
Q 001859 544 A-----G-EMLTYAHETQHEKIIRGLALGIALTVYGRE-----EEADTL---IEQMTRDQDPILRYGGMYALALAYSGTA 609 (1003)
Q Consensus 544 a-----~-~LL~~~~et~~e~i~r~~algLgLl~~G~~-----e~ad~l---ie~L~~~~d~i~R~~a~~alglAyaGTG 609 (1003)
+ . .|+..+.......+.|-+.-.|..++-|+. +.+..+ +..|..+.|+.+.--++++ ++|.--|
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA--lsyLsdg 267 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWA--LSYLTDG 267 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHhcC
Confidence 1 1 344433333345789999999999999974 444433 4455567888887666664 6688778
Q ss_pred CHHHHHHHHH--------HHhcCCChhHHHHHHHHHhhhcCCCCC---------ChHHHHHHHhhcCCchhhHHHHHHHH
Q 001859 610 NNKAIRQLLH--------FAVSDVSDDVRRTAVLALGFVLYSEPE---------QTPRIVSLLSESYNPHVRYGAALAVG 672 (1003)
Q Consensus 610 n~~aI~~LL~--------~~vsd~~ddvrr~Avl~LGlI~~g~~e---------~v~~ll~~L~~s~np~VR~gaalALG 672 (1003)
.++.|+-++. -+..+.+..++-.|.-++|-|..|+.+ ..+.+..+|..++..++|.-++..++
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 8888885433 234556677888999999999999863 34444455556888999999999999
Q ss_pred HHhcCCCc--HHHHH-----HHhhhcCCChhHHHHHHHHHHHHHhcccc
Q 001859 673 ISCAGTGL--SEAIS-----LLEPLTSDVVDFVRQGALIAMAMVMVQIN 714 (1003)
Q Consensus 673 l~~aGtg~--~~aId-----lL~~l~~D~dd~Vrq~AiiALGlI~~gt~ 714 (1003)
-+.||+.. ..+|+ .|-.+++..+-.+|.-|..|++=..++.+
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 99998752 22333 34445556667799999999997766554
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.63 E-value=0.0084 Score=81.04 Aligned_cols=287 Identities=18% Similarity=0.107 Sum_probs=190.4
Q ss_pred hhHHHHHHhhhhcCCCch--------hhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccch--------HhHHHHH
Q 001859 414 AKFSATAGLGVIHRGHLQ--------QGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG--------EGIKQFL 477 (1003)
Q Consensus 414 ~kfsAtaSLG~Ih~g~~~--------~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~--------~~al~~L 477 (1003)
.+-.|...+|.|-.|+.+ +++..|-+.|.+ ++..++--|+.+||-+..+.. ..++..|
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s------~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET------GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPAL 535 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHH
Confidence 344556677777666643 344555556654 266778888999998876432 1367788
Q ss_pred HhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhc-CCCc---------hHHHHH
Q 001859 478 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV-GTAS---------EKAGEM 547 (1003)
Q Consensus 478 ~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~-Gs~n---------~~a~~L 547 (1003)
.+.|++. +.-++.-|+-+|.-+..+. +.+.+..|..++.++++.....+.-++|-+.- +.++ ...++.
T Consensus 536 V~LL~sg-d~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~ 613 (2102)
T PLN03200 536 LWLLKNG-GPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRT 613 (2102)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHH
Confidence 8888874 5778888989988875543 55667778888877777666666667766522 3332 123433
Q ss_pred HHHhhhcCchhHHHHHHHHHhHhccCChhh---------HHHHHHHHhcCCChhhHHHHHHHHHHhhc-CCCCHH-----
Q 001859 548 LTYAHETQHEKIIRGLALGIALTVYGREEE---------ADTLIEQMTRDQDPILRYGGMYALALAYS-GTANNK----- 612 (1003)
Q Consensus 548 L~~~~et~~e~i~r~~algLgLl~~G~~e~---------ad~lie~L~~~~d~i~R~~a~~alglAya-GTGn~~----- 612 (1003)
|.-+.++.++.+.+-++-.|+-+|-|+++. +..+++.|...+..+ +..++++++-.+. |+.++.
T Consensus 614 Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v-~keAA~AL~nL~~~~~~~q~~~~v~ 692 (2102)
T PLN03200 614 LIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV-ATQSARALAALSRSIKENRKVSYAA 692 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHH-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 333455678999999999999999998764 557777777655554 5556777775554 332221
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCC--------CCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHH
Q 001859 613 --AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSE--------PEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSE 682 (1003)
Q Consensus 613 --aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~--------~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~ 682 (1003)
+|..|+..+ .+.+.+++..|+.+|+.++... ...++.+++.| +++++.+|..++-||.-.|-+.+-.+
T Consensus 693 ~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL-r~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 693 EDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL-REGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred cCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH-HhCChHHHHHHHHHHHHHHhCCChhH
Confidence 245666665 4567899999999999888754 35577777755 78899999999999999987766444
Q ss_pred HH-H------HHh---hhcC--CChhHHHHHHHHHHHHHhc
Q 001859 683 AI-S------LLE---PLTS--DVVDFVRQGALIAMAMVMV 711 (1003)
Q Consensus 683 aI-d------lL~---~l~~--D~dd~Vrq~AiiALGlI~~ 711 (1003)
++ + .+. .+++ |.+...-..|+.+|+.+.-
T Consensus 771 ~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 771 VLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred HHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 33 1 122 2222 4444444457888887754
No 27
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.54 E-value=9.8e-05 Score=56.75 Aligned_cols=35 Identities=40% Similarity=0.607 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHH
Q 001859 666 GAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQ 700 (1003)
Q Consensus 666 gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq 700 (1003)
|++++||++|||+++.+++++|.++.+|++.+++|
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccccccC
Confidence 68999999999999999999999999999999886
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.53 E-value=0.0082 Score=71.81 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=9.2
Q ss_pred ccccccccHHHHHHHH
Q 001859 842 KLPAAVLSTSAKAKAR 857 (1003)
Q Consensus 842 k~~tavLS~t~k~~~r 857 (1003)
.|...+|++.+|--.+
T Consensus 469 ~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 469 EVKLQILTALAKLFKR 484 (526)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4566666666665433
No 29
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.52 E-value=0.00014 Score=55.97 Aligned_cols=31 Identities=39% Similarity=0.617 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhcCCCh
Q 001859 492 GACLGLGLAALGTADEDIYDDIKNVLYTDSA 522 (1003)
Q Consensus 492 GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~ 522 (1003)
||++|||++++|++|+++++.|++++..++.
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~ 31 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSN 31 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 6788888888888888888888888854443
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.4 Score=61.45 Aligned_cols=223 Identities=17% Similarity=0.147 Sum_probs=121.7
Q ss_pred cccchhHHHHHHHHhhcCCCcchhhchhhhhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCC--CCCCCC
Q 001859 376 NSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAG--GGGSPY 453 (1003)
Q Consensus 376 ~s~~~~A~~~~nafmnaGt~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~--~~~~~y 453 (1003)
+++-|+|.-|.-.|+-. .=.. ..|..+.+.-.....+.++--...+ +.|...+.-. ...++|
T Consensus 263 ~~~R~~ALe~ivs~~e~---Ap~~-------~k~~~~~~~~lv~~~l~~mte~~~D------~ew~~~d~~ded~~~~~~ 326 (1075)
T KOG2171|consen 263 NSIRHLALEFLVSLSEY---APAM-------CKKLALLGHTLVPVLLAMMTEEEDD------DEWSNEDDLDEDDEETPY 326 (1075)
T ss_pred HHHHHHHHHHHHHHHHh---hHHH-------hhhchhhhccHHHHHHHhcCCcccc------hhhccccccccccccCcH
Confidence 56677787766666653 1111 2233344433344445555444433 4455532100 012345
Q ss_pred chhhHHHHHhhhhccch-----HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH------HHHHHHHHhhcCCCh
Q 001859 454 SEGGALYALGLIHANHG-----EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE------DIYDDIKNVLYTDSA 522 (1003)
Q Consensus 454 ~k~GAl~ALGLI~~g~~-----~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e------~~~e~L~~~L~~Ds~ 522 (1003)
.-+-. +|-.+.++-+ -+.+.++..+|.+ .+...||.|+++|+.++=|..+- .++....+.|..+.+
T Consensus 327 ~~A~~--~lDrlA~~L~g~~v~p~~~~~l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 327 RAAEQ--ALDRLALHLGGKQVLPPLFEALEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP 403 (1075)
T ss_pred HHHHH--HHHHHHhcCChhhehHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 44333 3333333222 4678888888888 45899999999999998887642 344444445544567
Q ss_pred hhHHHHHHHHhhhhcCCC------chHHH--HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhc-CCChhh
Q 001859 523 VAGEAAGISMGLLMVGTA------SEKAG--EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPIL 593 (1003)
Q Consensus 523 ~~~e~AalALGLI~~Gs~------n~~a~--~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~-~~d~i~ 593 (1003)
.++.+|+.|+|-+-..=. ..+.+ .|+..+.++++.++..-+|.+ +++.... .++-+.
T Consensus 404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~a--------------l~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAA--------------LVNFSEECDKSILE 469 (1075)
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHH--------------HHHHHHhCcHHHHH
Confidence 889999999996521100 01111 222233344454444443322 2222221 123334
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC
Q 001859 594 RYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP 645 (1003)
Q Consensus 594 R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~ 645 (1003)
.|...+ .+++|..+....+..++..+|.+||.|+..-.
T Consensus 470 pYLd~l--------------m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 470 PYLDGL--------------MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHH--------------HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 444322 23466666677788999999999999987654
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.29 E-value=0.91 Score=56.44 Aligned_cols=260 Identities=17% Similarity=0.083 Sum_probs=124.4
Q ss_pred HHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhcc--chHhHHHHHHhhcccCCchhHHHHHHHH
Q 001859 419 TAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHAN--HGEGIKQFLRDSLRSTNVEVIQHGACLG 496 (1003)
Q Consensus 419 taSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g--~~~~al~~L~~~L~~~~~~~vr~GA~LG 496 (1003)
..+......|+.+++...+.+.+... ..+ ..+.+.+|.++.. ..+.++..+.+.+....+ ...+...
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~ 538 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIE------PDF--FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK---NLRAILA 538 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC------CCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHH
Confidence 33444556677777776666554432 111 2245555555543 335677777666553211 1234445
Q ss_pred HHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhccCC
Q 001859 497 LGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGR 574 (1003)
Q Consensus 497 LGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~ 574 (1003)
+|.++...++ +++...+...+..+.... .+.+.+|-++...++.+-. .++..+.+.......-...+|..+...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEI--EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccch--hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 5555544443 355555555543221111 1334555555555554433 55543332222222333445555666677
Q ss_pred hhhHHHHHHHHhcC-CChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHH
Q 001859 575 EEEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVS 653 (1003)
Q Consensus 575 ~e~ad~lie~L~~~-~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~ 653 (1003)
.+.+-...+.+... ++.. ...+.+|.+|.-.|+.......+..+.....++......++..+...|+.+.+.++++
T Consensus 617 ~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSA---LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred HHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666655554432 2111 1233456666677776555555555544333333333344444445566666666666
Q ss_pred HHhhcCCchhhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CChh
Q 001859 654 LLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVD 696 (1003)
Q Consensus 654 ~L~~s~np~VR~gaalALGl~~aGtg~-~~aIdlL~~l~~-D~dd 696 (1003)
.+.+.+.... -+-..+|.++...|+ .+++..+..... +|++
T Consensus 694 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 694 SLQKQHPKAA--LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHhhCcCCh--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 6654432221 122334444444443 455665555443 4443
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.26 E-value=0.0097 Score=73.68 Aligned_cols=206 Identities=21% Similarity=0.196 Sum_probs=131.0
Q ss_pred HHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC---HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHH
Q 001859 473 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD---EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLT 549 (1003)
Q Consensus 473 al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~---e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~ 549 (1003)
+..++.+......+.-+|+=|.|.||-++-+... .+....+.+.+.++++-...+|++|||.+-+|+-+.-+-.+++
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~ 898 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILE 898 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHH
Confidence 4455556655445679999999999999765432 3566677777777888889999999998877765433335665
Q ss_pred HhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHH-HHHhcCCChh
Q 001859 550 YAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLL-HFAVSDVSDD 628 (1003)
Q Consensus 550 ~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL-~~~vsd~~dd 628 (1003)
........+..-. -.+.+.+....-...+ .....|..|| +.| +...|-
T Consensus 899 qi~sqpk~QyLLL----------------hSlkevi~~~svd~~~--------------~~v~~IW~lL~k~c-E~~eeg 947 (1233)
T KOG1824|consen 899 QIESQPKRQYLLL----------------HSLKEVIVSASVDGLK--------------PYVEKIWALLFKHC-ECAEEG 947 (1233)
T ss_pred HHhcchHhHHHHH----------------HHHHHHHHHhccchhh--------------hhHHHHHHHHHHhc-ccchhh
Confidence 4332212111111 1122222211100011 1122333333 332 344566
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-HHh-------hhcCCChhHHHH
Q 001859 629 VRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLE-------PLTSDVVDFVRQ 700 (1003)
Q Consensus 629 vrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-lL~-------~l~~D~dd~Vrq 700 (1003)
.|...+-+||.+.+-+|+....-++.++.++.|+.|..+.-|.-.. =+-.+..|| +|. .+..|||..|||
T Consensus 948 tR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfs--isd~p~~id~~lk~~ig~fl~~~~dpDl~Vrr 1025 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFS--ISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRR 1025 (1233)
T ss_pred hHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeee--ecCCCCccCHHHHHHHHHHHHHHhCCchhHHH
Confidence 7888999999999999987666688899999999999888776443 345566666 333 356799999999
Q ss_pred HHHHHHHHHhc
Q 001859 701 GALIAMAMVMV 711 (1003)
Q Consensus 701 ~AiiALGlI~~ 711 (1003)
.|+.++.-..-
T Consensus 1026 vaLvv~nSaah 1036 (1233)
T KOG1824|consen 1026 VALVVLNSAAH 1036 (1233)
T ss_pred HHHHHHHHHHc
Confidence 99977765543
No 33
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.015 Score=68.71 Aligned_cols=247 Identities=19% Similarity=0.183 Sum_probs=140.9
Q ss_pred HHHHhhhhccchHh--HHHHHHhhcccCCchhHHHHHHHHHHHH-hcCCCCHHHHHHHHHhhcC---C--ChhhHHH--H
Q 001859 459 LYALGLIHANHGEG--IKQFLRDSLRSTNVEVIQHGACLGLGLA-ALGTADEDIYDDIKNVLYT---D--SAVAGEA--A 528 (1003)
Q Consensus 459 l~ALGLI~~g~~~~--al~~L~~~L~~~~~~~vr~GA~LGLGla-~~Gs~~e~~~e~L~~~L~~---D--s~~~~e~--A 528 (1003)
.=|||+.+.-.+.+ ++--|.+++.++.+.--++.-++++-.+ -.=-.|.++...+.+.|.+ + .-+..|+ +
T Consensus 208 YHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~ 287 (898)
T COG5240 208 YHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARA 287 (898)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 34689988866533 4444556666543222233333333222 1112456788888887732 2 2334443 2
Q ss_pred HHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHHHHHH----HhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHH
Q 001859 529 GISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALG----IALTVYGREEEADTLIEQMTRDQDPILRYGGMYALAL 603 (1003)
Q Consensus 529 alALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~~alg----LgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~algl 603 (1003)
.-++.+=++|+..-+.. .-|+... +.+-...||.|+- |++....+--.++.-++.|..+.+.- .++|++.
T Consensus 288 v~~~~~~nv~~~~~~~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~---IstyAIT- 362 (898)
T COG5240 288 VCALSEENVGSQFVDQTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRT---ISTYAIT- 362 (898)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhccccc---chHHHHH-
Confidence 33444556666544433 3333222 2356677888754 44444444445667777777665433 3333332
Q ss_pred hhcCCCCHHHHHHHHHHHhc---CCCh--------------------------------------hHHHHHHHHHhhhcC
Q 001859 604 AYSGTANNKAIRQLLHFAVS---DVSD--------------------------------------DVRRTAVLALGFVLY 642 (1003)
Q Consensus 604 AyaGTGn~~aI~~LL~~~vs---d~~d--------------------------------------dvrr~Avl~LGlI~~ 642 (1003)
-...||+.+-|.+|+....+ |.+| +.++++|-+|.=+.-
T Consensus 363 tLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 363 TLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME 442 (898)
T ss_pred HHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 22489999999999887754 4332 235666666655554
Q ss_pred CCCCChHHHHHHHhh----------------------------------------cCCchhhHHHHHHHHHHhcCC----
Q 001859 643 SEPEQTPRIVSLLSE----------------------------------------SYNPHVRYGAALAVGISCAGT---- 678 (1003)
Q Consensus 643 g~~e~v~~ll~~L~~----------------------------------------s~np~VR~gaalALGl~~aGt---- 678 (1003)
..|++-.|.++.|.+ ..|.+||.++.-||....-.-
T Consensus 443 ~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~ 522 (898)
T COG5240 443 NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV 522 (898)
T ss_pred hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc
Confidence 455444444443321 246689999999985531111
Q ss_pred CcHHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 001859 679 GLSEAISLLEPLTSDVVDFVRQGALIAMAMVM 710 (1003)
Q Consensus 679 g~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~ 710 (1003)
-...++.+|.+|.+|.||.||--|.+++-.+-
T Consensus 523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 12344559999999999999999998887653
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.11 E-value=0.033 Score=66.67 Aligned_cols=257 Identities=18% Similarity=0.184 Sum_probs=127.6
Q ss_pred CCCchhhHHHHHhhhhccch-HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC--HH-HHHHHHHhhcCCChhhHH
Q 001859 451 SPYSEGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD--ED-IYDDIKNVLYTDSAVAGE 526 (1003)
Q Consensus 451 ~~y~k~GAl~ALGLI~~g~~-~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~--e~-~~e~L~~~L~~Ds~~~~e 526 (1003)
+++.++-|+-.++-|..... +..+..+.+.+.+ .+.+||..|++++.-++-...+ +. ..+.|...|...+..+..
T Consensus 92 n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~ 170 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVS 170 (526)
T ss_dssp SHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHH
T ss_pred CHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHH
Confidence 67888888888887764222 3445556666666 4578888888888888644322 13 567777777444445555
Q ss_pred HHHHHHhhhhcCCCchHH----H-HHHHHhhh--cCchhHHHHHHH-HHhHhccCChhhH--HHHHHHHh---cCCChhh
Q 001859 527 AAGISMGLLMVGTASEKA----G-EMLTYAHE--TQHEKIIRGLAL-GIALTVYGREEEA--DTLIEQMT---RDQDPIL 593 (1003)
Q Consensus 527 ~AalALGLI~~Gs~n~~a----~-~LL~~~~e--t~~e~i~r~~al-gLgLl~~G~~e~a--d~lie~L~---~~~d~i~ 593 (1003)
+|..++.-+ ..+++. + .+...+.. ....++.....+ .|..+.....+.. ..+++.+. ...++-+
T Consensus 171 ~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 171 AALSLLSEI---KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HHHHHHHHH---HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence 566666544 223332 2 23322221 223333332222 2222222222222 12333222 2333444
Q ss_pred HHHHHHHHHHhhcCCCC--HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---ChHHHHHHHhhcCCchhhHHHH
Q 001859 594 RYGGMYALALAYSGTAN--NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---QTPRIVSLLSESYNPHVRYGAA 668 (1003)
Q Consensus 594 R~~a~~alglAyaGTGn--~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e---~v~~ll~~L~~s~np~VR~gaa 668 (1003)
.+.++-++. .+...-. ..+++.|.+.+. +.+..+|..+.-.|..+....+. ...-.+..+..+.|+.||.-+.
T Consensus 248 ~~e~~~~i~-~l~~~~~~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 248 VYEAIRLII-KLSPSPELLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp HHHHHHHHH-HHSSSHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHH-HhhcchHHHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHH
Confidence 444433222 1111111 235555555543 55566777777777777655521 1222233344466777777766
Q ss_pred HHHHHHhcCCCcHHHHHHHhhhcCCC-hhHHHHHHHHHHHHHhccc
Q 001859 669 LAVGISCAGTGLSEAISLLEPLTSDV-VDFVRQGALIAMAMVMVQI 713 (1003)
Q Consensus 669 lALGl~~aGtg~~~aIdlL~~l~~D~-dd~Vrq~AiiALGlI~~gt 713 (1003)
-.|..++--+.-..+++-|.....+. +.++|..++-+++-+...-
T Consensus 326 ~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 326 DLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 66655533323344445444444333 5557777777777666543
No 35
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.027 Score=63.23 Aligned_cols=246 Identities=17% Similarity=0.197 Sum_probs=175.9
Q ss_pred hhhccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHhhhh
Q 001859 464 LIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLM 536 (1003)
Q Consensus 464 LI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalALGLI~ 536 (1003)
.|.+|+...-+++|. +......+.-|+-+|--+..||.++ .+.-++..+|.+.+.-+++-|..|||-|.
T Consensus 110 VIdaGvVpRfvefm~----~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiA 185 (526)
T COG5064 110 VIDAGVVPRFVEFMD----EIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA 185 (526)
T ss_pred HHhccccHHHHHHHH----hcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhcccc
Confidence 456666544444443 3355789999999999999998764 57888999997777788999999999874
Q ss_pred cCCCch-H------HH-HHHHHhhhcC-chhHHHHHHHHHhHhccCCh--------hhHHHHHHHHhcCCChhhHHHHHH
Q 001859 537 VGTASE-K------AG-EMLTYAHETQ-HEKIIRGLALGIALTVYGRE--------EEADTLIEQMTRDQDPILRYGGMY 599 (1003)
Q Consensus 537 ~Gs~n~-~------a~-~LL~~~~et~-~e~i~r~~algLgLl~~G~~--------e~ad~lie~L~~~~d~i~R~~a~~ 599 (1003)
-.|... + +. .+|-++.+.. |-.+.|.+---|+-++-|+. ..+-.++..|....|+-+-.-+++
T Consensus 186 GDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W 265 (526)
T COG5064 186 GDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW 265 (526)
T ss_pred CCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 322111 1 12 3444444433 78999999999999999953 345566777778888887777777
Q ss_pred HHHHhhcCCCCHHHHHHHHHH--------HhcCCChhHHHHHHHHHhhhcCCCCCC--------hHHHHHHHhhcCCchh
Q 001859 600 ALALAYSGTANNKAIRQLLHF--------AVSDVSDDVRRTAVLALGFVLYSEPEQ--------TPRIVSLLSESYNPHV 663 (1003)
Q Consensus 600 alglAyaGTGn~~aI~~LL~~--------~vsd~~ddvrr~Avl~LGlI~~g~~e~--------v~~ll~~L~~s~np~V 663 (1003)
+ +.|.--|.+++|+.+|.. +.++.+-.|+.-|.=++|-|.-|+..+ +...+..|+.+.-..+
T Consensus 266 A--iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~i 343 (526)
T COG5064 266 A--ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENI 343 (526)
T ss_pred H--HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhh
Confidence 6 468899999999966543 234556677888888999998887632 3455666667766799
Q ss_pred hHHHHHHHHHHhcCCCc--HHHHH-----HHhhhcCCChhHHHHHHHHHHHHHhccccc
Q 001859 664 RYGAALAVGISCAGTGL--SEAIS-----LLEPLTSDVVDFVRQGALIAMAMVMVQINE 715 (1003)
Q Consensus 664 R~gaalALGl~~aGtg~--~~aId-----lL~~l~~D~dd~Vrq~AiiALGlI~~gt~~ 715 (1003)
|.-+|..+.-+-||+-. +.+|+ .|..+++..+-+++.-|.-|+.-...|..+
T Consensus 344 rKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 344 RKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred hhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 99999999999887642 33444 344455566778899999998877777655
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.80 E-value=0.52 Score=53.85 Aligned_cols=223 Identities=13% Similarity=0.005 Sum_probs=90.7
Q ss_pred hhccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCCh--hhHHHHHHHHhhhhcCCCc
Q 001859 465 IHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSA--VAGEAAGISMGLLMVGTAS 541 (1003)
Q Consensus 465 I~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~--~~~e~AalALGLI~~Gs~n 541 (1003)
+..|..+.|+..+.+.+....+ . ..+...+|.++...++- .+.+.+...+..+.. .....+...||.++...++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-T--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-c--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344445566666665543211 1 12334445444444332 444444444432211 1111234455555555554
Q ss_pred hHHH-HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcC-CChhhH-HH-HHHHHHHhhcCCCCHHHHHHH
Q 001859 542 EKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD-QDPILR-YG-GMYALALAYSGTANNKAIRQL 617 (1003)
Q Consensus 542 ~~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~-~d~i~R-~~-a~~alglAyaGTGn~~aI~~L 617 (1003)
.+-. ..+..+.+.......-...++..+...|+-+.+....+.+... +++... .. ....+|..|...|+.....+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4333 3333222211111222223333444455555554444444332 111110 11 112345555666665544444
Q ss_pred HHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc-HHHHHHHhhhc
Q 001859 618 LHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLT 691 (1003)
Q Consensus 618 L~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~-~~aIdlL~~l~ 691 (1003)
+.-+.+...+.+.....+|..+...|+.+.+...++...+. +|.....+...++.++...|+ .+++..+..+.
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444322223333344444444555555555555544432 222222222334444444443 34445555544
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=96.78 E-value=0.68 Score=58.52 Aligned_cols=270 Identities=15% Similarity=0.155 Sum_probs=137.9
Q ss_pred CCCCchhhHHHHHhhhhccch-HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCC----CHHHHHHHHHhhcCCChhh
Q 001859 450 GSPYSEGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA----DEDIYDDIKNVLYTDSAVA 524 (1003)
Q Consensus 450 ~~~y~k~GAl~ALGLI~~g~~-~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~----~e~~~e~L~~~L~~Ds~~~ 524 (1003)
.++++++-|+-.||.|..... +..+..+.+.|.+ .+.+||-.|++|+.-+|--.. .....+.|..+|...++.+
T Consensus 117 ~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~V 195 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVV 195 (746)
T ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccH
Confidence 478999999999998876433 3455566677766 569999999999999985432 1245678888775334444
Q ss_pred HHHHHHHHhhhhcCCCchH---HH-----HHHHHhhhcCchhHHHHHHHHHhHhccC--ChhhHHHHHHHHhc---CCCh
Q 001859 525 GEAAGISMGLLMVGTASEK---AG-----EMLTYAHETQHEKIIRGLALGIALTVYG--REEEADTLIEQMTR---DQDP 591 (1003)
Q Consensus 525 ~e~AalALGLI~~Gs~n~~---a~-----~LL~~~~et~~e~i~r~~algLgLl~~G--~~e~ad~lie~L~~---~~d~ 591 (1003)
...|..+|=-|. ..+++ .. .|+..+. +-.+|.....+-+ |..|. ..+.+..+++.+.. +.++
T Consensus 196 v~nAl~aL~eI~--~~~~~~l~l~~~~~~~Ll~~L~--e~~EW~Qi~IL~l-L~~y~P~~~~e~~~il~~l~~~Lq~~N~ 270 (746)
T PTZ00429 196 ASNAAAIVCEVN--DYGSEKIESSNEWVNRLVYHLP--ECNEWGQLYILEL-LAAQRPSDKESAETLLTRVLPRMSHQNP 270 (746)
T ss_pred HHHHHHHHHHHH--HhCchhhHHHHHHHHHHHHHhh--cCChHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHhcCCCH
Confidence 545555544432 11111 11 2222121 1234444333222 12232 23334455554443 3455
Q ss_pred hhHHHHHHHHHHhhcCCCCHHHHHHH--------HHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH-hhcCCc-
Q 001859 592 ILRYGGMYALALAYSGTANNKAIRQL--------LHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL-SESYNP- 661 (1003)
Q Consensus 592 i~R~~a~~alglAyaGTGn~~aI~~L--------L~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L-~~s~np- 661 (1003)
-+.+.++=++ +.+.-..+...++.+ +.. ...+..+|-.+.-.|-+|....|+....-++.. ..+.||
T Consensus 271 AVVl~Aik~i-l~l~~~~~~~~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~ 347 (746)
T PTZ00429 271 AVVMGAIKVV-ANLASRCSQELIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP 347 (746)
T ss_pred HHHHHHHHHH-HHhcCcCCHHHHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH
Confidence 4544443221 122222233433332 222 122344555555566666666554443333333 223333
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001859 662 HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 732 (1003)
Q Consensus 662 ~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~ 732 (1003)
+||.-.--.|-.++-.+.-..+++-|..+..|.|..+++.|+.|+|-+...-+.. ....++.|..++
T Consensus 348 yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll 414 (746)
T PTZ00429 348 FVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----APDCANLLLQIV 414 (746)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHh
Confidence 3555444444444333333445555556666777777777888888777643221 334444444444
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.48 E-value=0.34 Score=55.34 Aligned_cols=290 Identities=11% Similarity=-0.004 Sum_probs=126.4
Q ss_pred hcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhc--cchHhHHHHHHhhcccCC-chhHHHHHHHHHHHHh
Q 001859 425 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLRSTN-VEVIQHGACLGLGLAA 501 (1003)
Q Consensus 425 Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~--g~~~~al~~L~~~L~~~~-~~~vr~GA~LGLGla~ 501 (1003)
+..|+.++++..+.+-+..+ ... ..+.+.+|.++. |..+.++..+...+.... ....+.-+...||.++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD------PET--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC------ccc--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34455555555554444322 111 123444444433 333556666655554321 1122333455555555
Q ss_pred cCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchH-HHHHHHHhhhcC--chh--HH-HHHHHHHhHhccCC
Q 001859 502 LGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQ--HEK--II-RGLALGIALTVYGR 574 (1003)
Q Consensus 502 ~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~-a~~LL~~~~et~--~e~--i~-r~~algLgLl~~G~ 574 (1003)
...++- .+...+...+..+.. ...+-..++.++...++-+ +.+++..+.... +.. .. -...+|..+...|+
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 554442 455555555422111 1123334444555444433 223333222111 111 11 11223333344455
Q ss_pred hhhHHHHHHHHhcC-CChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChh-HHHHHHHHHhhhcCCCCCChHHHH
Q 001859 575 EEEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD-VRRTAVLALGFVLYSEPEQTPRIV 652 (1003)
Q Consensus 575 ~e~ad~lie~L~~~-~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~dd-vrr~Avl~LGlI~~g~~e~v~~ll 652 (1003)
.+.+....+.+... ++.. .+.+.+|..|...|+.+...+++..+.....+. ......++..+...|+.+.+...+
T Consensus 196 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 196 LDAARALLKKALAADPQCV---RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred HHHHHHHHHHHHhHCcCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555444332 2211 133456677777777655555555554422111 111223344455556666555666
Q ss_pred HHHhhcCCchhhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Q 001859 653 SLLSESYNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEK 730 (1003)
Q Consensus 653 ~~L~~s~np~VR~gaalALGl~~aGtg~-~~aIdlL~~l~~-D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~ 730 (1003)
+.+.+. +|.... ...+|.++...|+ .+|+.+|..... +|++. -...+++..+...+.++.. -.+..+.+.+.+
T Consensus 273 ~~~~~~-~p~~~~--~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~-~a~~~~~~~~~~ 347 (389)
T PRK11788 273 RRALEE-YPGADL--LLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAK-ESLLLLRDLVGE 347 (389)
T ss_pred HHHHHh-CCCchH--HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccch-hHHHHHHHHHHH
Confidence 555443 343322 2555555555554 456667765544 55542 3334445444333222211 114334455555
Q ss_pred HH
Q 001859 731 II 732 (1003)
Q Consensus 731 ~~ 732 (1003)
.+
T Consensus 348 ~~ 349 (389)
T PRK11788 348 QL 349 (389)
T ss_pred HH
Confidence 55
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.69 Score=55.56 Aligned_cols=244 Identities=15% Similarity=0.172 Sum_probs=160.9
Q ss_pred HHHHHHhhc-CCChhhHHHHHHHHhhhhcCCCchH-------HHHHHHHhhhcCchhHHHHHHHHHhHhccCCh------
Q 001859 510 YDDIKNVLY-TDSAVAGEAAGISMGLLMVGTASEK-------AGEMLTYAHETQHEKIIRGLALGIALTVYGRE------ 575 (1003)
Q Consensus 510 ~e~L~~~L~-~Ds~~~~e~AalALGLI~~Gs~n~~-------a~~LL~~~~et~~e~i~r~~algLgLl~~G~~------ 575 (1003)
+..|...|. .+++.....||.+|=-|-.||...+ ++.++..+....++.++.-++.+||-+.-...
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence 455666664 3456677789999887766664332 22233334456789999999999998754333
Q ss_pred ---hhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCC---CHHHHHHHHHHHh---cCCChhHHHHHHHHHhhhcCCCC-
Q 001859 576 ---EEADTLIEQMTRDQDPILRYGGMYALALAYSGTA---NNKAIRQLLHFAV---SDVSDDVRRTAVLALGFVLYSEP- 645 (1003)
Q Consensus 576 ---e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTG---n~~aI~~LL~~~v---sd~~ddvrr~Avl~LGlI~~g~~- 645 (1003)
-+.+.++..+.....-...+-++++++--..|.- ....|+.+|..+. -+.+.+|..-|+-+|..+.=|.+
T Consensus 191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 2345566555543321344456888888777763 2356666666543 36678899999999998876654
Q ss_pred --------CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc--HHHH-----HHHhhhcC-CChhHHHHHHHHHHHHH
Q 001859 646 --------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL--SEAI-----SLLEPLTS-DVVDFVRQGALIAMAMV 709 (1003)
Q Consensus 646 --------e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~--~~aI-----dlL~~l~~-D~dd~Vrq~AiiALGlI 709 (1003)
.-+++++.+|.+ .++.|+--+--++|-+-.|+.. ..+| ..|..+.+ .+.+..|..|...++=|
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred HHHHHHHccchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 457888887754 4566777888888887666643 2223 34455554 66677999999999999
Q ss_pred hccccccccch--HHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCC
Q 001859 710 MVQINEANDSR--VGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 757 (1003)
Q Consensus 710 ~~gt~~a~~pk--va~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 757 (1003)
.+|+.+.. -. -+.++..|.+++ +..|-..|.-|+-|.+-+..||.
T Consensus 350 tAG~~~qi-qaVida~l~p~Li~~l--~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 350 TAGNQEQI-QAVIDANLIPVLINLL--QTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred hcCCHHHH-HHHHHcccHHHHHHHH--hccchHHHHHHHHHHHhhcccCC
Confidence 99986531 00 123445566666 46678899999999887666654
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.058 Score=65.08 Aligned_cols=304 Identities=23% Similarity=0.293 Sum_probs=164.5
Q ss_pred HHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCC-chhhHHHHHhhhhccch-------HhHHHHHHhhcccCCchh
Q 001859 417 SATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPY-SEGGALYALGLIHANHG-------EGIKQFLRDSLRSTNVEV 488 (1003)
Q Consensus 417 sAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y-~k~GAl~ALGLI~~g~~-------~~al~~L~~~L~~~~~~~ 488 (1003)
..+|+|+++-.=..++-+.++-|+|... =..+.| +|-++.+|||.|--|.- .+.+.+|...|.+ +...
T Consensus 374 CSAAaLDVLanvf~~elL~~l~PlLk~~---L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D-Kkpl 449 (885)
T KOG2023|consen 374 CSAAALDVLANVFGDELLPILLPLLKEH---LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD-KKPL 449 (885)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHH---cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc-Cccc
Confidence 5677788877666666665555544321 012445 56677899999977743 2467888888877 4478
Q ss_pred HHHHHHHHHHHH----hcCCCCH---HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHH
Q 001859 489 IQHGACLGLGLA----ALGTADE---DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKII 560 (1003)
Q Consensus 489 vr~GA~LGLGla----~~Gs~~e---~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~ 560 (1003)
||.-.|-.|+-- ...++++ ++++.|...+...+.-+.|+|+.|..-. -+++- +|+.|+. .|.
T Consensus 450 VRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl-----eE~A~~eLVp~l~-----~IL 519 (885)
T KOG2023|consen 450 VRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL-----EEEAGEELVPYLE-----YIL 519 (885)
T ss_pred eeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----HHhccchhHHHHH-----HHH
Confidence 888888777642 1122222 3444444444334556778888876532 23333 4444331 222
Q ss_pred HHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHH--HHHHHhhcCCC-CHHH-HHHHHHHHh------cCCChhH-
Q 001859 561 RGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGM--YALALAYSGTA-NNKA-IRQLLHFAV------SDVSDDV- 629 (1003)
Q Consensus 561 r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~--~alglAyaGTG-n~~a-I~~LL~~~v------sd~~ddv- 629 (1003)
.-+.-+.| .|.++ +-.+-|-++ ++-+ +|.. |..+ |+.|+--++ +|.+.|+
T Consensus 520 ~~l~~af~--kYQ~K--------------NLlILYDAIgtlAds---vg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf 580 (885)
T KOG2023|consen 520 DQLVFAFG--KYQKK--------------NLLILYDAIGTLADS---VGHALNKPAYIQILMPPLIEKWELLSDSDKDLF 580 (885)
T ss_pred HHHHHHHH--HHhhc--------------ceehHHHHHHHHHHH---HHHhcCcHHHHHHhccHHHHHHHhcCcccchHH
Confidence 22222222 22211 111111111 1111 1111 1122 444443333 2333332
Q ss_pred -------HHHHHHHHhhhcCCCC--CChHHHHH----HHhhcCCch-------------hhHHHHHHHHHHhcCC---Cc
Q 001859 630 -------RRTAVLALGFVLYSEP--EQTPRIVS----LLSESYNPH-------------VRYGAALAVGISCAGT---GL 680 (1003)
Q Consensus 630 -------rr~Avl~LGlI~~g~~--e~v~~ll~----~L~~s~np~-------------VR~gaalALGl~~aGt---g~ 680 (1003)
.-+.+++-||.-|..| +.|-++++ ++....+|. .-.-.-+|-|+-.-.. .+
T Consensus 581 PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~ 660 (885)
T KOG2023|consen 581 PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQ 660 (885)
T ss_pred HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhh
Confidence 2334677788877776 55666665 333333321 1111223333321000 12
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccC
Q 001859 681 SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAG 755 (1003)
Q Consensus 681 ~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 755 (1003)
....++|-.|+.|+.++|||.|.-=||=+..-..+---|.++.|+..+..-+ ..+...+...|+-|.|.+.+-
T Consensus 661 snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl--~~~~isv~nNA~WAiGeia~k 733 (885)
T KOG2023|consen 661 SNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL--NPENISVCNNAIWAIGEIALK 733 (885)
T ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC--ChhhchHHHHHHHHHHHHHHH
Confidence 3356788899999999999999888887766555555577777777766333 234456778889999998754
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=96.02 E-value=1.4 Score=55.88 Aligned_cols=119 Identities=20% Similarity=0.178 Sum_probs=73.5
Q ss_pred cCchhHHHHHHHHHhHhccCChhhHHHHHHHHh---cCCChhhHHHHHHHHHHhhcCCCCHHHHHHH---HHHHhcCCCh
Q 001859 554 TQHEKIIRGLALGIALTVYGREEEADTLIEQMT---RDQDPILRYGGMYALALAYSGTANNKAIRQL---LHFAVSDVSD 627 (1003)
Q Consensus 554 t~~e~i~r~~algLgLl~~G~~e~ad~lie~L~---~~~d~i~R~~a~~alglAyaGTGn~~aI~~L---L~~~vsd~~d 627 (1003)
+++.+++|..-+.|-...-.++|.+--.++.+. .+++|++|..+.=+++ +......++.+ +.-|..|.++
T Consensus 79 S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs----~Ir~~~i~e~l~~~lkk~L~D~~p 154 (746)
T PTZ00429 79 STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMM----CIRVSSVLEYTLEPLRRAVADPDP 154 (746)
T ss_pred CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHhcCCCH
Confidence 445666665544443322224453333333333 3467888877766655 34455555544 3445678888
Q ss_pred hHHHHHHHHHhhhcCCCCCC------hHHHHHHHhhcCCchhhHHHHHHHHHHhcC
Q 001859 628 DVRRTAVLALGFVLYSEPEQ------TPRIVSLLSESYNPHVRYGAALAVGISCAG 677 (1003)
Q Consensus 628 dvrr~Avl~LGlI~~g~~e~------v~~ll~~L~~s~np~VR~gaalALGl~~aG 677 (1003)
-||+.|++|++-++-.+|+. ++.+.+ |+.+.||.|.+.+..+|--++--
T Consensus 155 YVRKtAalai~Kly~~~pelv~~~~~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 155 YVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE-LLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHHHHHhhCcccccccchHHHHHH-HhcCCCccHHHHHHHHHHHHHHh
Confidence 89999999999887766654 345444 56788888888888888777543
No 42
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.83 E-value=0.16 Score=62.13 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=96.0
Q ss_pred ccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCC---ChhHHHHHHHHHhhhcCC---C
Q 001859 571 VYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV---SDDVRRTAVLALGFVLYS---E 644 (1003)
Q Consensus 571 ~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~---~ddvrr~Avl~LGlI~~g---~ 644 (1003)
+.|...++..+.+.+...+-+-.-....+...+.++-+-+.+.++.|+.+|.++. +..++..|++++|-+.-+ +
T Consensus 352 ~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 352 QAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred hcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777777666554333333334444455555667777777777765432 335666677777654321 1
Q ss_pred CC---------ChHHHHHHHhh---cCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcC---CChhHHHHHHHHHHHHH
Q 001859 645 PE---------QTPRIVSLLSE---SYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS---DVVDFVRQGALIAMAMV 709 (1003)
Q Consensus 645 ~e---------~v~~ll~~L~~---s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~---D~dd~Vrq~AiiALGlI 709 (1003)
.+ -++.+.+.|.+ ..|...+....-|||-+ |.+.++..|.++.. +...++|..|+.||-.+
T Consensus 432 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~ 507 (574)
T smart00638 432 TPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----GHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNL 507 (574)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----CChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 11 12222333322 34555666666777755 66777776666654 33457888888888766
Q ss_pred hccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHH
Q 001859 710 MVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILA 748 (1003)
Q Consensus 710 ~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lA 748 (1003)
.... |+. .+..|..++.++.+++.+|.+|.++
T Consensus 508 a~~~-----p~~--v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 508 AKRD-----PRK--VQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred HHhC-----chH--HHHHHHHHHcCCCCChHHHHHHHHH
Confidence 5432 222 3455566667777777777777665
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.82 E-value=0.0096 Score=49.59 Aligned_cols=48 Identities=38% Similarity=0.392 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 001859 661 PHVRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDFVRQGALIAMAM 708 (1003)
Q Consensus 661 p~VR~gaalALGl~~aGtg~------~~aIdlL~~l~~D~dd~Vrq~AiiALGl 708 (1003)
|.||.+++.+||-++.+.+. +.++..|.+++.|+++.||.+|+.|||-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45778888888765433332 4566778888899999999999999984
No 44
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.9 Score=56.29 Aligned_cols=77 Identities=22% Similarity=0.070 Sum_probs=55.4
Q ss_pred hcCCchhhHHHHHHHHHHhcCC--CcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcccccc------ccchHHHHHHHH
Q 001859 657 ESYNPHVRYGAALAVGISCAGT--GLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA------NDSRVGTFRRQL 728 (1003)
Q Consensus 657 ~s~np~VR~gaalALGl~~aGt--g~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a------~~pkva~~lr~L 728 (1003)
...|.+||.++.-||+-..++. ..+.+.-+|.++..|+|+.||-.|.++|-.+.-.++.. ..+-+..+-|.|
T Consensus 476 iLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~~~l~~s~~~le~~l 555 (865)
T KOG1078|consen 476 ILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNYSGLFVSIPGLERSL 555 (865)
T ss_pred hhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcccccccccccchhHHHH
Confidence 4468899999999999987554 34566679999999999999999999998876333221 112244455666
Q ss_pred HHHHh
Q 001859 729 EKIIL 733 (1003)
Q Consensus 729 ~~~~~ 733 (1003)
..|+.
T Consensus 556 ~~y~~ 560 (865)
T KOG1078|consen 556 VSYIT 560 (865)
T ss_pred HHHhh
Confidence 66653
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.26 E-value=5.8 Score=50.63 Aligned_cols=348 Identities=11% Similarity=0.001 Sum_probs=174.0
Q ss_pred HHHHHHHhhcCCCcchhhchhhhhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHH
Q 001859 383 TIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 462 (1003)
Q Consensus 383 ~~~~nafmnaGt~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~AL 462 (1003)
..++.++.+.|-....+ .-=..++....+..-.-...++-.+..|+.++++..+.+++... .+... .+.+
T Consensus 53 ~~lA~~~~~~g~~~~A~-~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~------P~~~~---~~~l 122 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSL-TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA------PDKAN---LLAL 122 (765)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH---HHHH
Confidence 34556666655333221 10012344445555555555556677899999998888887653 11222 4444
Q ss_pred hhh--hccchHhHHHHHHhhcccC-CchhHHHHHHHHHHHHhc-CCCCHHHHHHHHHhhcCCChhh---HHHHHHHHhhh
Q 001859 463 GLI--HANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAAL-GTADEDIYDDIKNVLYTDSAVA---GEAAGISMGLL 535 (1003)
Q Consensus 463 GLI--~~g~~~~al~~L~~~L~~~-~~~~vr~GA~LGLGla~~-Gs~~e~~~e~L~~~L~~Ds~~~---~e~AalALGLI 535 (1003)
|.+ ..|..++|+..+.+.+... ++.... +.+|.+.. +...+.+++.+...+..+.... ...++..+.+.
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~----~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYP----TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 544 4455578999998888743 222222 22333332 2223567777776553111100 00111111111
Q ss_pred hcCCCc---------hHHHHHHHHhh----hcC--chhHHHHHHH-HHhHhccCChhhHHHHHHHHhcCCChhhHHHHHH
Q 001859 536 MVGTAS---------EKAGEMLTYAH----ETQ--HEKIIRGLAL-GIALTVYGREEEADTLIEQMTRDQDPILRYGGMY 599 (1003)
Q Consensus 536 ~~Gs~n---------~~a~~LL~~~~----et~--~e~i~r~~al-gLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~ 599 (1003)
..... .++++.++.+. ... +....+.... ...|+..|+-+.+....+.+....+++-.+...
T Consensus 199 -~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~- 276 (765)
T PRK10049 199 -FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR- 276 (765)
T ss_pred -cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-
Confidence 11111 22332222111 111 1222332221 112345577677777777777654333333222
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhcCCChh----HHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCc------------h-
Q 001859 600 ALALAYSGTANNKAIRQLLHFAVSDVSDD----VRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP------------H- 662 (1003)
Q Consensus 600 alglAyaGTGn~~aI~~LL~~~vsd~~dd----vrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np------------~- 662 (1003)
.+|.+|...|+.+....++..+......+ .-..+-++.+++-.++.+.+...++.+.....+ .
T Consensus 277 ~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 277 WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 24778999999877777777655432211 233445555566666667676777666544211 1
Q ss_pred hhHHHHHHHHHHhcCCC-cHHHHHHHhhhcC-CChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChh
Q 001859 663 VRYGAALAVGISCAGTG-LSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTM 740 (1003)
Q Consensus 663 VR~gaalALGl~~aGtg-~~~aIdlL~~l~~-D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~ 740 (1003)
-+.-+-+.+|.+....| ..+|+++|+.+.. +|++ ..+.+.+|.+...... ....++.|.+.+...-.++.
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~~g~-----~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQARGW-----PRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCChH
Confidence 11122233444444444 4778888888765 6665 3577888888765544 33445566666542222233
Q ss_pred hHHHHHHHhhhhccCCCc
Q 001859 741 SKMGAILASGILDAGGRN 758 (1003)
Q Consensus 741 ~rfga~lAqGLl~aGg~n 758 (1003)
+.+++|.+.++.+.
T Consensus 429 ----l~~~~a~~al~~~~ 442 (765)
T PRK10049 429 ----LEVEQAWTALDLQE 442 (765)
T ss_pred ----HHHHHHHHHHHhCC
Confidence 44445555554443
No 46
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.20 E-value=8.9 Score=48.13 Aligned_cols=289 Identities=11% Similarity=-0.014 Sum_probs=159.4
Q ss_pred HHHHHHHhhcCCCcchhhchhhhhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHH
Q 001859 383 TIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 462 (1003)
Q Consensus 383 ~~~~nafmnaGt~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~AL 462 (1003)
.-|+-..+..|-..+.+-. -...+....++...-..........|+.++++..+++.+..+ .++ ..+.+.+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l-~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------P~~--~~a~~~l 116 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTL-LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN------VCQ--PEDVLLV 116 (656)
T ss_pred HHHHHHHHhcCCcchhHHH-hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC------CCC--hHHHHHH
Confidence 4577788888877665321 124677788888888888888888999999998888887653 122 2234445
Q ss_pred hhh--hccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcC--CChhhHHHHHHHHhhhhc
Q 001859 463 GLI--HANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYT--DSAVAGEAAGISMGLLMV 537 (1003)
Q Consensus 463 GLI--~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~--Ds~~~~e~AalALGLI~~ 537 (1003)
|.+ ..|..++|+..+.+.+.-..+ . ..+...+|-++...++ +++...+...+.. ++..... .++ .+.
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~-~--~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~----~~~-~l~ 188 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSG-N--SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA----TCL-SFL 188 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH----HHH-HHH
Confidence 554 445557899999888774221 1 2234445555555554 3566666665432 2222111 111 233
Q ss_pred CCCc-hHHHHHHHHhhhcC-chhHHHHHHHHHhHhccCChhhHHHHHHHHhcC-CChhhHHHHHHHHHHhhcCCCCHH--
Q 001859 538 GTAS-EKAGEMLTYAHETQ-HEKIIRGLALGIALTVYGREEEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANNK-- 612 (1003)
Q Consensus 538 Gs~n-~~a~~LL~~~~et~-~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~-~d~i~R~~a~~alglAyaGTGn~~-- 612 (1003)
..++ .++...+..+.... .........++..+...|+.+++...++..... ++. ....+.+|.+|...|+..
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchhh
Confidence 3444 33444444332221 111112233455667788877776666655443 222 223345778888888865
Q ss_pred ---HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcC--CchhhHHHHHHHHHHhcCCCc-HHHHHH
Q 001859 613 ---AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY--NPHVRYGAALAVGISCAGTGL-SEAISL 686 (1003)
Q Consensus 613 ---aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~--np~VR~gaalALGl~~aGtg~-~~aIdl 686 (1003)
++. ++..+..-..++.+....+|..+...|+.+.+...++...+.. ++.++ ..+|.++...|+ .++++.
T Consensus 266 ~~~A~~-~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~----~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 266 KLQAAE-HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR----AMYARALRQVGQYTAASDE 340 (656)
T ss_pred HHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHCCCHHHHHHH
Confidence 344 3333333223344444555555555666666666666655443 23233 335555555564 566777
Q ss_pred HhhhcC-CChh
Q 001859 687 LEPLTS-DVVD 696 (1003)
Q Consensus 687 L~~l~~-D~dd 696 (1003)
+..+.. +|+.
T Consensus 341 l~~al~~~P~~ 351 (656)
T PRK15174 341 FVQLAREKGVT 351 (656)
T ss_pred HHHHHHhCccc
Confidence 776663 5543
No 47
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.90 E-value=0.14 Score=63.79 Aligned_cols=129 Identities=20% Similarity=0.195 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHH---HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---ChHHHH
Q 001859 579 DTLIEQMTRDQDPILRYGGMYALALAYSGTANNKA---IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---QTPRIV 652 (1003)
Q Consensus 579 d~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~a---I~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e---~v~~ll 652 (1003)
..+++.+...+-.+-|..--|. .-|+-+-..++ |..+++- ..|.|+.+|..|.=.++.| +.++ .+...+
T Consensus 58 ~dViK~~~trd~ElKrL~ylYl--~~yak~~P~~~lLavNti~kD-l~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~i 132 (757)
T COG5096 58 PDVIKNVATRDVELKRLLYLYL--ERYAKLKPELALLAVNTIQKD-LQDPNEEIRGFALRTLSLL--RVKELLGNIIDPI 132 (757)
T ss_pred HHHHHHHHhcCHHHHHHHHHHH--HHHhccCHHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHHH
Confidence 4556655533333334333333 33444444333 3333333 2467889999999999988 6664 333445
Q ss_pred HHHhhcCCchhhHHHHHHHHHHh-cCCC---cHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcc
Q 001859 653 SLLSESYNPHVRYGAALAVGISC-AGTG---LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 653 ~~L~~s~np~VR~gaalALGl~~-aGtg---~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
..+.++.+|.||+.|++|++-+| .+.- ....++.|.-++.|+++.|-.+|++++.-|--.
T Consensus 133 k~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 133 KKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 55668999999999999999998 3321 122567899999999999999999999988654
No 48
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.89 E-value=1.3 Score=54.32 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=8.7
Q ss_pred hHHHHHHHHHhhhcCCCCC
Q 001859 628 DVRRTAVLALGFVLYSEPE 646 (1003)
Q Consensus 628 dvrr~Avl~LGlI~~g~~e 646 (1003)
.+|-.|+.+|-.+....|+
T Consensus 495 ~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 495 FIRLAAILALRNLAKRDPR 513 (574)
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 3444555555544433343
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.60 E-value=0.055 Score=51.18 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=35.5
Q ss_pred hcCCchhhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCChhHHHHHHHH
Q 001859 657 ESYNPHVRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDFVRQGALI 704 (1003)
Q Consensus 657 ~s~np~VR~gaalALGl~~aGtg~------~~aIdlL~~l~~D~dd~Vrq~Aii 704 (1003)
.+.|+-|||.++-+|.-+.-..+. .++.+.|.+++.|+++.||++|-+
T Consensus 37 ~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 37 DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 567778888888888766433221 455668889999999999999863
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=1.2 Score=57.30 Aligned_cols=82 Identities=21% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhcCCCC--CChHHHHH---HHhhcCCchhhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCChhH
Q 001859 629 VRRTAVLALGFVLYSEP--EQTPRIVS---LLSESYNPHVRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDF 697 (1003)
Q Consensus 629 vrr~Avl~LGlI~~g~~--e~v~~ll~---~L~~s~np~VR~gaalALGl~~aGtg~------~~aIdlL~~l~~D~dd~ 697 (1003)
..+.|.-+|-.++++=+ ..+|.+++ .++++.++.-|.++-+||+.+.=|.++ ++++++.-....||.+.
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphpr 404 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPR 404 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 56778777777776643 34555554 456899999999999999998444332 33444555667899999
Q ss_pred HHHHHHHHHHHHh
Q 001859 698 VRQGALIAMAMVM 710 (1003)
Q Consensus 698 Vrq~AiiALGlI~ 710 (1003)
||.+|+.|+|.+.
T Consensus 405 Vr~AA~naigQ~s 417 (1075)
T KOG2171|consen 405 VRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999875
No 51
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.45 E-value=0.33 Score=59.88 Aligned_cols=78 Identities=23% Similarity=0.281 Sum_probs=40.0
Q ss_pred CCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC---hhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhh
Q 001859 659 YNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDV---VDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDK 735 (1003)
Q Consensus 659 ~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~---dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~ 735 (1003)
.|..-|..+.-|||-+ |.+.++..|.++..+. ..++|..|+.||.-+... +|+ ..+..|..++.|.
T Consensus 502 ~~~~~~~~~LkaLgN~----g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-----~~~--~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNL----GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-----CPE--KVREILLPIFMNT 570 (618)
T ss_dssp T-HHHHHHHHHHHHHH----T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------HH--HHHHHHHHHHH-T
T ss_pred cCHHHHHHHHHHhhcc----CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-----CcH--HHHHHHHHHhcCC
Confidence 4445566666666655 4456666666655544 456666666666644321 221 1345555566666
Q ss_pred cCChhhHHHHHH
Q 001859 736 HEDTMSKMGAIL 747 (1003)
Q Consensus 736 ~~d~~~rfga~l 747 (1003)
.+++.+|..|-+
T Consensus 571 ~e~~EvRiaA~~ 582 (618)
T PF01347_consen 571 TEDPEVRIAAYL 582 (618)
T ss_dssp TS-HHHHHHHHH
T ss_pred CCChhHHHHHHH
Confidence 666666665543
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.67 E-value=0.48 Score=44.28 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcH--
Q 001859 613 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS-- 681 (1003)
Q Consensus 613 aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~---------e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~-- 681 (1003)
.|+.|+..+. +.+.++|..++.+|+.+..+++ +.++.+++.| .+.|+.+|..++.+|+-++.+.+..
T Consensus 8 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 3555555543 4457788888888888776633 4556666654 5679999999999999997765321
Q ss_pred -----HHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 001859 682 -----EAISLLEPLTSDVVDFVRQGALIAMAMV 709 (1003)
Q Consensus 682 -----~aIdlL~~l~~D~dd~Vrq~AiiALGlI 709 (1003)
.++..|..+.++.+..+|..|+.+|+-+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 1344566667777888999988877654
No 53
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=0.35 Score=55.22 Aligned_cols=92 Identities=24% Similarity=0.144 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHhhhcCC-C-------CCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCC--------cHHHHHHHh
Q 001859 625 VSDDVRRTAVLALGFVLYS-E-------PEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTG--------LSEAISLLE 688 (1003)
Q Consensus 625 ~~ddvrr~Avl~LGlI~~g-~-------~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg--------~~~aIdlL~ 688 (1003)
.++-+||.+.-+|--+.-. + ...+|-+++ |+.++|+.|||-++-|+|.+..-.- -++.|.-|-
T Consensus 179 kdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVs-ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv 257 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVS-LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALV 257 (550)
T ss_pred chhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhh-hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHH
Confidence 3445667665544322111 1 134566666 4579999999999999998844322 245666777
Q ss_pred hhcCCChhHHHHHHHHHHHHHhccccccc
Q 001859 689 PLTSDVVDFVRQGALIAMAMVMVQINEAN 717 (1003)
Q Consensus 689 ~l~~D~dd~Vrq~AiiALGlI~~gt~~a~ 717 (1003)
.++.|+++-|+..|-.||+-+..+|.-.+
T Consensus 258 ~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 258 DLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred HHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 88899999999999999999998876543
No 54
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.44 E-value=31 Score=44.36 Aligned_cols=265 Identities=18% Similarity=0.153 Sum_probs=133.8
Q ss_pred hhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccC-Cc-hhHHH
Q 001859 414 AKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRST-NV-EVIQH 491 (1003)
Q Consensus 414 ~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~-~~-~~vr~ 491 (1003)
-|..|+.++|=|.++...-+-..+..-+-.+ .++.++.+|.+|.||||-+..|+-..=+.++.+.+.+. .. ...-|
T Consensus 835 ikvfa~LslGElgr~~~~s~~~e~~~~iiea--f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLh 912 (1233)
T KOG1824|consen 835 IKVFALLSLGELGRRKDLSPQNELKDTIIEA--FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLH 912 (1233)
T ss_pred HHHHHHhhhhhhccCCCCCcchhhHHHHHHH--cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHH
Confidence 4677888888888776532221111100000 12346778888888888888888766666666666542 11 11222
Q ss_pred HHHHHHHHHhcCCCC---HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcCchhHHHHHHHHHh
Q 001859 492 GACLGLGLAALGTAD---EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIA 568 (1003)
Q Consensus 492 GA~LGLGla~~Gs~~---e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~~e~i~r~~algLg 568 (1003)
.---.|+-.....-+ +++|+.|.... +...|-.+-..|-+||
T Consensus 913 Slkevi~~~svd~~~~~v~~IW~lL~k~c-----------------------------------E~~eegtR~vvAECLG 957 (1233)
T KOG1824|consen 913 SLKEVIVSASVDGLKPYVEKIWALLFKHC-----------------------------------ECAEEGTRNVVAECLG 957 (1233)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHHHhc-----------------------------------ccchhhhHHHHHHHhh
Confidence 221222111110000 12222222222 1122333444556667
Q ss_pred HhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHH-------HhcCCChhHHHHHHHHHhhhc
Q 001859 569 LTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHF-------AVSDVSDDVRRTAVLALGFVL 641 (1003)
Q Consensus 569 Ll~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~-------~vsd~~ddvrr~Avl~LGlI~ 641 (1003)
.+..-.++..-.-++.+...+.+..|...+- +.-|.=+-....|+.+++- ++.|.+-.|||.|+..+--..
T Consensus 958 kL~l~epesLlpkL~~~~~S~a~~~rs~vvs--avKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 958 KLVLIEPESLLPKLKLLLRSEASNTRSSVVS--AVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred hHHhCChHHHHHHHHHHhcCCCcchhhhhhh--eeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 6666666666666666666677776665433 2334445555555555552 245677788999888887666
Q ss_pred CCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCC-CcHHHHH--HHhhhcCCChh--HHHHHHHHHHHHHhcccccc
Q 001859 642 YSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGT-GLSEAIS--LLEPLTSDVVD--FVRQGALIAMAMVMVQINEA 716 (1003)
Q Consensus 642 ~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGt-g~~~aId--lL~~l~~D~dd--~Vrq~AiiALGlI~~gt~~a 716 (1003)
-..|.-+..++..|+. ..|--| =..+-|. -+-|+-|-.|| ++|++|.--|=-.+-..-+.
T Consensus 1036 hNKpslIrDllpeLLp---------------~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1036 HNKPSLIRDLLPELLP---------------LLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred ccCHhHHHHHHHHHHH---------------HHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhh
Confidence 6666555555544331 111111 1233343 25566664443 78999986554332211111
Q ss_pred ccchHHHHHHHHHHHHhh
Q 001859 717 NDSRVGTFRRQLEKIILD 734 (1003)
Q Consensus 717 ~~pkva~~lr~L~~~~~~ 734 (1003)
. .+.+|+.....=+.|
T Consensus 1101 ~--dit~Fl~~~~~GL~D 1116 (1233)
T KOG1824|consen 1101 L--DITEFLNHVEDGLED 1116 (1233)
T ss_pred c--cHHHHHHHHHhhcch
Confidence 1 155566555444434
No 55
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.35 E-value=0.28 Score=46.48 Aligned_cols=83 Identities=17% Similarity=0.045 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhc
Q 001859 663 VRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKH 736 (1003)
Q Consensus 663 VR~gaalALGl~~aGtg~------~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~ 736 (1003)
.|+|+-++|+-++.|-|. ...|..+-.+..|+|.-||..|..+|.-|.....+.-.|...++...|.+.+. +
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~--D 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA--D 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 478888877777666554 33444444677899999999999999998766555444555666777788775 5
Q ss_pred CChhhHHHHHH
Q 001859 737 EDTMSKMGAIL 747 (1003)
Q Consensus 737 ~d~~~rfga~l 747 (1003)
.|+.+|-|+.+
T Consensus 80 ~d~~Vr~~a~~ 90 (97)
T PF12755_consen 80 PDENVRSAAEL 90 (97)
T ss_pred CchhHHHHHHH
Confidence 77888888865
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.32 E-value=29 Score=43.63 Aligned_cols=273 Identities=12% Similarity=-0.035 Sum_probs=131.8
Q ss_pred hhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhh--hhccchHhHHHHHHhhcc
Q 001859 405 DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGL--IHANHGEGIKQFLRDSLR 482 (1003)
Q Consensus 405 ~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGL--I~~g~~~~al~~L~~~L~ 482 (1003)
.|+..+.+....-...+......|+.++++..+.+.+.-+ .... .+...+|. ...|..++|+..+...+.
T Consensus 101 ~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~------P~~~--~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 101 KLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF------SGNS--QIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcH--HHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4766666655444444555667788888887777665532 1122 23333443 344455677777766543
Q ss_pred cC-CchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchH-HHHHHHHhhhcCchhH
Q 001859 483 ST-NVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQHEKI 559 (1003)
Q Consensus 483 ~~-~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~-a~~LL~~~~et~~e~i 559 (1003)
.. .+...... ++. +...++ +++.+.+..++..+. .........+|.++...++.+ ++..+..+.....+..
T Consensus 173 ~~P~~~~a~~~----~~~-l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 173 EVPPRGDMIAT----CLS-FLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred hCCCCHHHHHH----HHH-HHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 21 22222211 111 222232 466776766664321 111112233344555555443 4355543333332223
Q ss_pred HHHHHHHHhHhccCChhh----HHHHHHHHh-cCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHH
Q 001859 560 IRGLALGIALTVYGREEE----ADTLIEQMT-RDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAV 634 (1003)
Q Consensus 560 ~r~~algLgLl~~G~~e~----ad~lie~L~-~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Av 634 (1003)
.....+|..+...|+.+. +....+... ..++.. .+...+|.+|...|+.+.....+..+..-..++..-...
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 333346666677787653 444444433 333321 234556777888888765555555554422222222334
Q ss_pred HHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-cHHHHHHHhhhcC-CChh
Q 001859 635 LALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTG-LSEAISLLEPLTS-DVVD 696 (1003)
Q Consensus 635 l~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg-~~~aIdlL~~l~~-D~dd 696 (1003)
++..+...|+.+.+...++.+......+.. .-..+|.++...| ..+|++.+..+.. +|+.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~--~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSK--WNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 555556667776666666555543211111 1111222222334 4667776666553 4554
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.24 E-value=30 Score=43.56 Aligned_cols=219 Identities=13% Similarity=0.045 Sum_probs=95.8
Q ss_pred hhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhc
Q 001859 423 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAAL 502 (1003)
Q Consensus 423 G~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~ 502 (1003)
++...|..++|..+....+... -.+.......+.-+...+|..+.|...+.+..+. + .+-+-+ |.-|.+..
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g-----~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--d-~~t~n~-lI~~y~~~ 404 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTG-----FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--N-LISWNA-LIAGYGNH 404 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhC-----CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--C-eeeHHH-HHHHHHHc
Confidence 4455566666665544332221 1122222233333444566667777777655432 2 222222 11223322
Q ss_pred CCCCHHHHHHHHHhhcC---CChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhc-C-chhHHHHHHHHHhHhccCChhh
Q 001859 503 GTADEDIYDDIKNVLYT---DSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHET-Q-HEKIIRGLALGIALTVYGREEE 577 (1003)
Q Consensus 503 Gs~~e~~~e~L~~~L~~---Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et-~-~e~i~r~~algLgLl~~G~~e~ 577 (1003)
|- -+++++.+...+.. ++.++-.+ +--++...|.- +++..++..+.+. . ......+.++.=++.--|+-++
T Consensus 405 G~-~~~A~~lf~~M~~~g~~Pd~~T~~~--ll~a~~~~g~~-~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 405 GR-GTKAVEMFERMIAEGVAPNHVTFLA--VLSACRYSGLS-EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred CC-HHHHHHHHHHHHHhCCCCCHHHHHH--HHHHHhcCCcH-HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 32 14566666554422 22222221 11122233321 2222444433322 1 2333445555555556667777
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001859 578 ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 657 (1003)
Q Consensus 578 ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~ 657 (1003)
|..+++.+...++..+ |.+. . -+|+--||.+..+.....+.+-..+++..+..++-++...|+.+.+.++++.+.+
T Consensus 481 A~~~~~~~~~~p~~~~-~~~L-l--~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 481 AYAMIRRAPFKPTVNM-WAAL-L--TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHCCCCCCHHH-HHHH-H--HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7777765544333332 3322 2 2334456665555555444332222333444444455555666666666665544
Q ss_pred c
Q 001859 658 S 658 (1003)
Q Consensus 658 s 658 (1003)
.
T Consensus 557 ~ 557 (697)
T PLN03081 557 K 557 (697)
T ss_pred c
Confidence 3
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=14 Score=46.58 Aligned_cols=268 Identities=16% Similarity=0.137 Sum_probs=137.2
Q ss_pred hHHHHHHhhcccC---CchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHH
Q 001859 472 GIKQFLRDSLRST---NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEML 548 (1003)
Q Consensus 472 ~al~~L~~~L~~~---~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL 548 (1003)
+.+-+|.+-|++. .+.++..-|+-+||-++..---.+++-...++|.+.++..+--|++++=-+.- -.++..+++
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f 180 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHF 180 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHh
Confidence 4555554444321 23455555555565542111011333333334444455555555554332211 112222111
Q ss_pred -----HHhhhcCchhHHHHHHHHHhHhccCC------hhhHHHHHHHHh--------------cCCChhhHHHHHHHHHH
Q 001859 549 -----TYAHETQHEKIIRGLALGIALTVYGR------EEEADTLIEQMT--------------RDQDPILRYGGMYALAL 603 (1003)
Q Consensus 549 -----~~~~et~~e~i~r~~algLgLl~~G~------~e~ad~lie~L~--------------~~~d~i~R~~a~~algl 603 (1003)
+.+.+..|--...+..+..-++-.+. ++.+..++..|+ ...||++.......+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 12334445555555555555444431 134455555554 22367766554444443
Q ss_pred hhcCCCCHHHHHHHHHHHh----cC-CCh----hHHHHHHHHHhhhcCCCC--CChHHHHHHHhhcCCchhhHHHHHHHH
Q 001859 604 AYSGTANNKAIRQLLHFAV----SD-VSD----DVRRTAVLALGFVLYSEP--EQTPRIVSLLSESYNPHVRYGAALAVG 672 (1003)
Q Consensus 604 AyaGTGn~~aI~~LL~~~v----sd-~~d----dvrr~Avl~LGlI~~g~~--e~v~~ll~~L~~s~np~VR~gaalALG 672 (1003)
.|.||.++-+.+-.++. .. .+. -|---+|..|--|..... ..+-.++...+-+.|-.+||-+--+|+
T Consensus 261 --LGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 261 --LGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred --hcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 47777766654443332 11 111 122223444444432222 234455555666777889999888887
Q ss_pred HHhcCCCcHHHHH----HHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHH
Q 001859 673 ISCAGTGLSEAIS----LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILA 748 (1003)
Q Consensus 673 l~~aGtg~~~aId----lL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lA 748 (1003)
.. =+-++.|++ ++..|++|||.-+|+-|+. |.+-+...+| |..+.+.|..|+. ..|++ |-+-+|
T Consensus 339 r~--V~~d~~avqrHr~tIleCL~DpD~SIkrralE-Ls~~lvn~~N-----v~~mv~eLl~fL~--~~d~~--~k~~~a 406 (866)
T KOG1062|consen 339 RV--VQQDPTAVQRHRSTILECLKDPDVSIKRRALE-LSYALVNESN-----VRVMVKELLEFLE--SSDED--FKADIA 406 (866)
T ss_pred hh--hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH-HHHHHhcccc-----HHHHHHHHHHHHH--hccHH--HHHHHH
Confidence 76 446777775 6788899999999998874 2333332333 5567777777773 22444 557778
Q ss_pred hhhhccC
Q 001859 749 SGILDAG 755 (1003)
Q Consensus 749 qGLl~aG 755 (1003)
.||+.+-
T Consensus 407 s~I~~la 413 (866)
T KOG1062|consen 407 SKIAELA 413 (866)
T ss_pred HHHHHHH
Confidence 8887653
No 59
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.90 E-value=5.8 Score=45.39 Aligned_cols=266 Identities=20% Similarity=0.262 Sum_probs=140.0
Q ss_pred chhhHHHHHHhhhhcCCCchhhhhhccc--------cccCCCCCCCCCCCchhhHHHHHhhhhccch---H-----hHHH
Q 001859 412 NWAKFSATAGLGVIHRGHLQQGRSLMAP--------YLPQGGAGGGGSPYSEGGALYALGLIHANHG---E-----GIKQ 475 (1003)
Q Consensus 412 ~w~kfsAtaSLG~Ih~g~~~~~l~~L~~--------yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~---~-----~al~ 475 (1003)
+--+|-|+.+|--|-.|...+..-+++. .|+ +++.-++--+..|||-|---.. | .+++
T Consensus 129 ~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~------s~~~~V~eQavWALGNiAGDS~~~RD~vL~~gale 202 (526)
T COG5064 129 DMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS------STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALE 202 (526)
T ss_pred hHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc------CchHHHHHHHHHHhccccCCchhHHHHHHhcCchH
Confidence 3468889999988888888766544332 222 2455667777777777733221 1 2444
Q ss_pred HHHhhcccCC-chhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-H
Q 001859 476 FLRDSLRSTN-VEVIQHGACLGLGLAALGTADE-------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-E 546 (1003)
Q Consensus 476 ~L~~~L~~~~-~~~vr~GA~LGLGla~~Gs~~e-------~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~ 546 (1003)
-|...|.++. +--+..-+.--|.-.+-|..-+ .++..|..++++-++.+..-|+.|+. |+..|..+.+ .
T Consensus 203 plL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS--YlsDg~~E~i~a 280 (526)
T COG5064 203 PLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS--YLSDGPNEKIQA 280 (526)
T ss_pred HHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--HhccCcHHHHHH
Confidence 5555554422 1223334444454444443311 34455555555544444444566655 3333333333 2
Q ss_pred HHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcC----CChhhHHHHHHHHHHhhcCCCCHHHHH-------
Q 001859 547 MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD----QDPILRYGGMYALALAYSGTANNKAIR------- 615 (1003)
Q Consensus 547 LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~----~d~i~R~~a~~alglAyaGTGn~~aI~------- 615 (1003)
+|.. |+ .| .+++.|.+. ..|.+|..|-+ =||+....+
T Consensus 281 vld~---------------g~----~~------RLvElLs~~sa~iqtPalR~vGNI-------VTG~D~QTqviI~~G~ 328 (526)
T COG5064 281 VLDV---------------GI----PG------RLVELLSHESAKIQTPALRSVGNI-------VTGSDDQTQVIINCGA 328 (526)
T ss_pred HHhc---------------CC----cH------HHHHHhcCccccccCHHHHhhcCe-------eecCccceehheeccc
Confidence 2210 00 00 133333321 23444443322 233322221
Q ss_pred --HHHHHHhcCCChhHHHHHHHHHhhhcCCCCCCh---------HHHHHHHhhcCCchhhHHHHHHHHHHhc-CCCcHHH
Q 001859 616 --QLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQT---------PRIVSLLSESYNPHVRYGAALAVGISCA-GTGLSEA 683 (1003)
Q Consensus 616 --~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v---------~~ll~~L~~s~np~VR~gaalALGl~~a-Gtg~~~a 683 (1003)
.+.. +.+...+.+|+-|.-.|.-|.-|+.+++ |.++ +|+.+++-.+|.-+|.|+.-+.. |.+.++.
T Consensus 329 L~a~~~-lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi-~lls~ae~k~kKEACWAisNatsgg~~~PD~ 406 (526)
T COG5064 329 LKAFRS-LLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLI-HLLSSAEYKIKKEACWAISNATSGGLNRPDI 406 (526)
T ss_pred HHHHHH-HhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCchH
Confidence 2222 2355566888888888888888876443 4444 46678889999999999976544 3455655
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001859 684 ISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 732 (1003)
Q Consensus 684 IdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~ 732 (1003)
|..| |.|+++-.|.-.+....|. .++|+ ++.+..++
T Consensus 407 iryL----------v~qG~IkpLc~~L~~~dNk-iiev~--LD~~eniL 442 (526)
T COG5064 407 IRYL----------VSQGFIKPLCDLLDVVDNK-IIEVA--LDAIENIL 442 (526)
T ss_pred HHHH----------HHccchhHHHHHHhccCcc-chhhh--HHHHHHHH
Confidence 5432 4577777777666666653 34443 55555444
No 60
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=1.2 Score=58.80 Aligned_cols=179 Identities=15% Similarity=0.162 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHhHhc-cC----ChhhHHHHHHHHhcCC---ChhhHHHHHHHHHH-hhcCCC-CHHHHHHHHHHHhcCC
Q 001859 556 HEKIIRGLALGIALTV-YG----REEEADTLIEQMTRDQ---DPILRYGGMYALAL-AYSGTA-NNKAIRQLLHFAVSDV 625 (1003)
Q Consensus 556 ~e~i~r~~algLgLl~-~G----~~e~ad~lie~L~~~~---d~i~R~~a~~algl-AyaGTG-n~~aI~~LL~~~vsd~ 625 (1003)
+|-+.-.++-|||++| +| +++-++.++++|...+ ..+....-.+..|. +.-+|| +..--++|+..+.
T Consensus 874 dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS--- 950 (1702)
T KOG0915|consen 874 DEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS--- 950 (1702)
T ss_pred HHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh---
Confidence 3334444445555552 33 2345556666555322 22222222333332 223566 6677788888764
Q ss_pred ChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc------HHHHHHHhhhcCCChhHHH
Q 001859 626 SDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL------SEAISLLEPLTSDVVDFVR 699 (1003)
Q Consensus 626 ~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~------~~aIdlL~~l~~D~dd~Vr 699 (1003)
-+|+|+++-+.+++--++--..-|.|+|+.+|.+..-.|. ...|-=|-++-.||+.-|+
T Consensus 951 ---------------dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen 951 ---------------DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred ---------------hcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence 2488889999888777777777899999999988554332 1222335556679999885
Q ss_pred HHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccC
Q 001859 700 QGALIAMAMVMVQIN-EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAG 755 (1003)
Q Consensus 700 q~AiiALGlI~~gt~-~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aG 755 (1003)
+ |+..+=-.+++.+ +...-....+++-|-.-+ ..++=-+|-.+++|+-=+==|
T Consensus 1016 ~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l--t~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1016 D-AMTSIWNALITDSKKVVDEYLNEILDELLVNL--TSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred H-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHcC
Confidence 5 5556555555542 221122344444444333 245556777777776544333
No 61
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=35 Score=42.66 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=53.1
Q ss_pred HHHHhhhcCCCCCChHHHH---HHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-----HHhhhcCCChhHHHHHHHHH
Q 001859 634 VLALGFVLYSEPEQTPRIV---SLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-----LLEPLTSDVVDFVRQGALIA 705 (1003)
Q Consensus 634 vl~LGlI~~g~~e~v~~ll---~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-----lL~~l~~D~dd~Vrq~AiiA 705 (1003)
+++|++-+=.++++..+-+ ..+..+.++.+||-+--.+...|.++...+++. +++.|-.++|--|||-|+-=
T Consensus 313 aI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 313 AISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3445444444455544444 444578899999999999999999988888885 45555569999999998855
Q ss_pred HHH
Q 001859 706 MAM 708 (1003)
Q Consensus 706 LGl 708 (1003)
|=+
T Consensus 393 LY~ 395 (938)
T KOG1077|consen 393 LYA 395 (938)
T ss_pred HHH
Confidence 443
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.57 E-value=7.8 Score=39.43 Aligned_cols=61 Identities=21% Similarity=0.138 Sum_probs=29.1
Q ss_pred chhhHHHHHhhhhccch--HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhh
Q 001859 454 SEGGALYALGLIHANHG--EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVL 517 (1003)
Q Consensus 454 ~k~GAl~ALGLI~~g~~--~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L 517 (1003)
....+.+.+|.++...+ +.++..+.+.+.... .. ..+...+|.++.-.++. .+.+.+...+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~--~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DD--YLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555565554333 456666666554321 11 12334455555444442 4455554444
No 63
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.45 E-value=0.98 Score=56.66 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=95.1
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHH--
Q 001859 574 REEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRI-- 651 (1003)
Q Consensus 574 ~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~l-- 651 (1003)
+-++...+|..|...+| +..+..=+ .-+.-| ++.-+++|+|+... ...-..|+.+.-.
T Consensus 36 kidAmK~iIa~M~~G~d-mssLf~dV---iK~~~t-rd~ElKrL~ylYl~---------------~yak~~P~~~lLavN 95 (757)
T COG5096 36 KIDAMKKIIAQMSLGED-MSSLFPDV---IKNVAT-RDVELKRLLYLYLE---------------RYAKLKPELALLAVN 95 (757)
T ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHH---HHHHHh-cCHHHHHHHHHHHH---------------HHhccCHHHHHHHHH
Confidence 44677777777776655 32222111 122223 33455777776542 1112233322222
Q ss_pred -HHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Q 001859 652 -VSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEK 730 (1003)
Q Consensus 652 -l~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~ 730 (1003)
+..=.++.||.+|..|.=.++++-.+.=...+++.+..+.+|+.++||+.|++|++-+-.=..+ .++.. ++...+.-
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~-l~~~~-g~~~~l~~ 173 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD-LYHEL-GLIDILKE 173 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-hhhcc-cHHHHHHH
Confidence 2333478899999999999999844433455556889999999999999999999998743333 22222 12333433
Q ss_pred HHhhhcCChhhHHHHHHHhhhhccC
Q 001859 731 IILDKHEDTMSKMGAILASGILDAG 755 (1003)
Q Consensus 731 ~~~~~~~d~~~rfga~lAqGLl~aG 755 (1003)
++ .+.||.+.-.|-+++-.+|.-
T Consensus 174 l~--~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LV--ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred Hh--hCCCchHHHHHHHHHHHhchh
Confidence 33 357788777777777666654
No 64
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.40 E-value=0.42 Score=44.65 Aligned_cols=102 Identities=23% Similarity=0.130 Sum_probs=69.3
Q ss_pred ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc-------HHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccc
Q 001859 647 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-------SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 719 (1003)
Q Consensus 647 ~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~-------~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~p 719 (1003)
.++.+++.| .++++.+|..+..+|+.++.+.+. ..+++.|..++.|++..|+..|+.+|+-+....+... .
T Consensus 8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~ 85 (120)
T cd00020 8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK-L 85 (120)
T ss_pred ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH-H
Confidence 466777765 567799999999999999876321 2445566777788899999999999999987654321 1
Q ss_pred hHH--HHHHHHHHHHhhhcCChhhHHHHHHHhhhh
Q 001859 720 RVG--TFRRQLEKIILDKHEDTMSKMGAILASGIL 752 (1003)
Q Consensus 720 kva--~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 752 (1003)
.+. +++..+.+++. ..+..++-.+..+++-+
T Consensus 86 ~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 86 IVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 111 24566667664 34566666665555443
No 65
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.34 E-value=39 Score=42.54 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=99.4
Q ss_pred hhhHHHHHhhhhccchH--hH------HHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHH
Q 001859 455 EGGALYALGLIHANHGE--GI------KQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGE 526 (1003)
Q Consensus 455 k~GAl~ALGLI~~g~~~--~a------l~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e 526 (1003)
......-+|.|.-...+ ++ -=-|.+.|++ .+..+|..|.-.+|.|.-..+-.++++.|.+.|....-..+-
T Consensus 900 qen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLka-hkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~Rv 978 (1172)
T KOG0213|consen 900 QENCIDLVGTIADRGPEYVSAREWMRICFELLELLKA-HKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRV 978 (1172)
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhch
Confidence 33344446777654432 12 1223466666 347899999999999987777779999998888654444455
Q ss_pred HHHHHHhhhhcCCCch-HHH-HHHHHhhhcCchhHHHHHHHHHhHhc--cCCh--h---hHHHHHHHHhcCCChhhHHHH
Q 001859 527 AAGISMGLLMVGTASE-KAG-EMLTYAHETQHEKIIRGLALGIALTV--YGRE--E---EADTLIEQMTRDQDPILRYGG 597 (1003)
Q Consensus 527 ~AalALGLI~~Gs~n~-~a~-~LL~~~~et~~e~i~r~~algLgLl~--~G~~--e---~ad~lie~L~~~~d~i~R~~a 597 (1003)
+..+|++.|. -+|.+ .++ .|+. -..+.+-.+.-|.--+|+++| +|.. + ++-.+++--+.+.|++-|..+
T Consensus 979 cTtvaIaIVa-E~c~pFtVLPalmn-eYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta 1056 (1172)
T KOG0213|consen 979 CTTVAIAIVA-ETCGPFTVLPALMN-EYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTA 1056 (1172)
T ss_pred hhhhhhhhhh-hhcCchhhhHHHHh-hccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHH
Confidence 5666666542 22322 344 4443 113456667777777777764 3322 1 234555555567788888777
Q ss_pred HHH---HHHhhcCCCCHHHHHHHHHHH
Q 001859 598 MYA---LALAYSGTANNKAIRQLLHFA 621 (1003)
Q Consensus 598 ~~a---lglAyaGTGn~~aI~~LL~~~ 621 (1003)
+-+ +++.-.|||..++.--||++.
T Consensus 1057 ~~~I~Hl~Lg~~g~g~eda~iHLLN~i 1083 (1172)
T KOG0213|consen 1057 MNVIKHLALGVPGTGCEDALIHLLNLI 1083 (1172)
T ss_pred HHHHHHHhcCCCCcCcHHHHHHHHHHh
Confidence 643 345566888888777777664
No 66
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=8.9 Score=49.55 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=130.7
Q ss_pred hHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH---HHHHHHHHhhc-CCChhhHHHHHHHHhhhhc-----CCCch
Q 001859 472 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE---DIYDDIKNVLY-TDSAVAGEAAGISMGLLMV-----GTASE 542 (1003)
Q Consensus 472 ~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e---~~~e~L~~~L~-~Ds~~~~e~AalALGLI~~-----Gs~n~ 542 (1003)
.+++.|...|.+ .+..|||.|+=|+|-+....-.+ +++....+++. -++...-.+|+++|+..-. ++--+
T Consensus 341 ~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 341 FVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHhccC-CcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 467777777776 56899999999999985333222 23333333220 0122233367777664311 11111
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 001859 543 KAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAV 622 (1003)
Q Consensus 543 ~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~v 622 (1003)
+++.++. .+-|-..++|. ......+|-+++|+ -.||+-+-+...++.+++-+.
T Consensus 420 dVvplI~---kaL~Yd~~~G~-----------------------~s~G~~VRDaAcY~-~WAf~Rays~~~l~p~l~~L~ 472 (1133)
T KOG1943|consen 420 DVVPLIL---KALHYDVRRGQ-----------------------HSVGQHVRDAACYV-CWAFARAYSPSDLKPVLQSLA 472 (1133)
T ss_pred HHHHHHH---HHhhhhhhhcc-----------------------cccccchHHHHHHH-HHHHHhcCChhhhhHHHHHHH
Confidence 2221111 00011111110 12234567777775 467777777776666555333
Q ss_pred c--------CCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh--hcCCchhhHHHHHHHHHHhcCCC--cHHHHH-HHhh
Q 001859 623 S--------DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS--ESYNPHVRYGAALAVGISCAGTG--LSEAIS-LLEP 689 (1003)
Q Consensus 623 s--------d~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~--~s~np~VR~gaalALGl~~aGtg--~~~aId-lL~~ 689 (1003)
+ |.+=..||+|.-++=-. .|.+...|-=+++++ .++.-..|-..=..+....|..+ ...+++ ++-.
T Consensus 473 s~LL~~AlFDrevncRRAAsAAlqE~-VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 473 SALLIVALFDREVNCRRAASAALQEN-VGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK 551 (1133)
T ss_pred HHHHHHHhcCchhhHhHHHHHHHHHH-hccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc
Confidence 2 44446799988877543 355444443333332 22222234333344444333333 344444 3222
Q ss_pred hcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceE
Q 001859 690 LTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVT 760 (1003)
Q Consensus 690 l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~t 760 (1003)
-...=|..+|.-|.++|.-+....++-..- . -+-+.+...+ ..|++.++|+.+|.|=+-.+.+.+.
T Consensus 552 Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~-~L~~lld~~l---s~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 552 KVCHWDVKIRELAAYALHKLSLTEPKYLAD-Y-VLPPLLDSTL---SKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhHHhhcc-c-chhhhhhhhc---CCChHHhhhhHHHHHHHHHHhhhhh
Confidence 123346778999999999866654432100 0 1233344443 5789999999999887766555433
No 67
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.19 E-value=1.9 Score=53.28 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=46.8
Q ss_pred hcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhc--CCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC--hhH
Q 001859 622 VSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSES--YNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDV--VDF 697 (1003)
Q Consensus 622 vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s--~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~--dd~ 697 (1003)
.+..+.+-+-.++-|||-+ |.++.++.+...+... -.+++|..|..||.-+ +-.-...+.++|.+...|+ +.+
T Consensus 499 ~~~~~~~~~~~~LkaLgN~--g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 499 VSRGDEEEKIVYLKALGNL--GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEKVREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHH--T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHHHHHHHHHHHH-TTS-HH
T ss_pred hhccCHHHHHHHHHHhhcc--CCchhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHHHHHHHHHHhcCCCCChh
Confidence 3455566777788888866 6676666655444332 3667888888888743 2222335556666665543 446
Q ss_pred HHHHHHH
Q 001859 698 VRQGALI 704 (1003)
Q Consensus 698 Vrq~Aii 704 (1003)
||.+|+.
T Consensus 576 vRiaA~~ 582 (618)
T PF01347_consen 576 VRIAAYL 582 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888873
No 68
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=5.5 Score=45.93 Aligned_cols=282 Identities=16% Similarity=0.141 Sum_probs=142.0
Q ss_pred CCCchhhHHHHHhhhhccch----HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHhhc
Q 001859 451 SPYSEGGALYALGLIHANHG----EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--------DIYDDIKNVLY 518 (1003)
Q Consensus 451 ~~y~k~GAl~ALGLI~~g~~----~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e--------~~~e~L~~~L~ 518 (1003)
..|--.|+++.+--+.-+.. ..++..|...+++ .+.-+|.-++-++|.++...... .++-.|.+++.
T Consensus 183 vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 183 VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD 261 (550)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh
Confidence 34556677777655444332 1467888888887 56899999999999987654322 35666777775
Q ss_pred CCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHH
Q 001859 519 TDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGM 598 (1003)
Q Consensus 519 ~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~ 598 (1003)
+.++-...-|++|||-+-..|. -..++.+ . -...-+++.|...--|.+-...+
T Consensus 262 ~~s~kvkcqA~lALrnlasdt~--Yq~eiv~----a---------------------g~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 262 DGSDKVKCQAGLALRNLASDTE--YQREIVE----A---------------------GSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred CCChHHHHHHHHHHhhhcccch--hhhHHHh----c---------------------CCchHHHHHHhCcchhHHHHHHH
Confidence 5556666679999996643332 1112111 0 00011122221111111111100
Q ss_pred HHHHHhhcCCCCH-HHHH-----HHHHHHhcCCChhHHHHHHHHHhhhcC---------CCCCChHHHHHHHhhcCCchh
Q 001859 599 YALALAYSGTANN-KAIR-----QLLHFAVSDVSDDVRRTAVLALGFVLY---------SEPEQTPRIVSLLSESYNPHV 663 (1003)
Q Consensus 599 ~alglAyaGTGn~-~aI~-----~LL~~~vsd~~ddvrr~Avl~LGlI~~---------g~~e~v~~ll~~L~~s~np~V 663 (1003)
. +-=.-+..+|. .+++ .|..++.-..+++++..||-.|--++- .+..+++.+++++. ++.-.|
T Consensus 315 C-IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l-D~pvsv 392 (550)
T KOG4224|consen 315 C-IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL-DGPVSV 392 (550)
T ss_pred H-HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh-cCChhH
Confidence 0 00001122332 1112 244443334455555555444332221 23357888777665 444455
Q ss_pred hHHHHHHHHHHhcCCCcHH------HHHHHhhhcCCChhHHHHHHHHHHHHHhccccccc-------cchHHHHHHHHHH
Q 001859 664 RYGAALAVGISCAGTGLSE------AISLLEPLTSDVVDFVRQGALIAMAMVMVQINEAN-------DSRVGTFRRQLEK 730 (1003)
Q Consensus 664 R~gaalALGl~~aGtg~~~------aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~-------~pkva~~lr~L~~ 730 (1003)
|.-..-+++...-...+.+ .++.|.+++.+...+||-+|.-||+-.....++.. .| +..+.-.|.+
T Consensus 393 qseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P-~~gi~g~L~R 471 (550)
T KOG4224|consen 393 QSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHP-VQGIQGRLAR 471 (550)
T ss_pred HHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCc-chhHHHHHHH
Confidence 5444334433322333333 34578899999999999999999987665544310 11 1233334555
Q ss_pred HHhhhcCChhhHHHHH-HHhhhhccCCCceEEEecc
Q 001859 731 IILDKHEDTMSKMGAI-LASGILDAGGRNVTIRLLS 765 (1003)
Q Consensus 731 ~~~~~~~d~~~rfga~-lAqGLl~aGg~n~tisl~s 765 (1003)
+++ +.+.+.+..++ --|-|++.+...+|-=.++
T Consensus 472 fl~--S~~~tf~hia~wTI~qLle~h~~~~~~~i~~ 505 (550)
T KOG4224|consen 472 FLA--SHELTFRHIARWTIQQLLEDHDLPLTAFIQS 505 (550)
T ss_pred HHh--hhHHHHHHHHHHHHHHHHHhCCccHHHHHhC
Confidence 543 23333333332 3355666665544433333
No 69
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.13 E-value=48 Score=41.12 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 001859 218 YLSICQCLMFLDEPEGVVSILEKLLR 243 (1003)
Q Consensus 218 y~~~~~~~i~Lnd~~~v~~il~~L~~ 243 (1003)
|.+...|++.+++.+.+.+.+.+.++
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778888888888888888888764
No 70
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.08 E-value=6 Score=45.14 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 001859 627 DDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISC 675 (1003)
Q Consensus 627 ddvrr~Avl~LGlI~~g~~---------e~v~~ll~~L~~s~np~VR~gaalALGl~~ 675 (1003)
..+..+|+-+-||++.--+ +.++++.+ |+++.|..||.+|.-+|+++|
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSE-LLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 4577888888888874433 12344444 446778888888888887773
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=90.79 E-value=27 Score=42.82 Aligned_cols=77 Identities=16% Similarity=-0.004 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchH-HHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHh
Q 001859 508 DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMT 586 (1003)
Q Consensus 508 ~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~-a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~ 586 (1003)
.+...+...+.-|..... +-..+|.++...++.+ +...++.+.+.......-...+|..+...|+.+++-..++...
T Consensus 322 ~A~~~~~~Al~ldP~~~~--a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 322 KAKEHAIKATELDHNNPQ--ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHhcCCCCHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555533322211 2234445554444433 3344443332221111222335555666676665555554443
No 72
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=12 Score=47.06 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=52.1
Q ss_pred CCCCchhhHHHHHhhhhccchHh-HHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH--HHHHHHHHhhcCCChhhHH
Q 001859 450 GSPYSEGGALYALGLIHANHGEG-IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--DIYDDIKNVLYTDSAVAGE 526 (1003)
Q Consensus 450 ~~~y~k~GAl~ALGLI~~g~~~~-al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e--~~~e~L~~~L~~Ds~~~~e 526 (1003)
...-+|+.|+-.|.-|-.....+ ++..+.+...+. +.+||.-|+.+|-..|.--.++ .+.+.+..+|...++.+..
T Consensus 120 pN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvg 198 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVG 198 (968)
T ss_pred CcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchh
Confidence 45678888888887776644443 445556666663 4789988988888887543322 4444444455323455555
Q ss_pred HHHHHHhhh
Q 001859 527 AAGISMGLL 535 (1003)
Q Consensus 527 ~AalALGLI 535 (1003)
+|.+|.--|
T Consensus 199 sAv~AF~ev 207 (968)
T KOG1060|consen 199 SAVMAFEEV 207 (968)
T ss_pred HHHHHHHHh
Confidence 666665543
No 73
>PLN03218 maturation of RBCL 1; Provisional
Probab=90.67 E-value=73 Score=42.51 Aligned_cols=190 Identities=11% Similarity=-0.014 Sum_probs=98.5
Q ss_pred hhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCC-chhHHHHHHHHHHHH
Q 001859 422 LGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTN-VEVIQHGACLGLGLA 500 (1003)
Q Consensus 422 LG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~-~~~vr~GA~LGLGla 500 (1003)
-++...|+.++++.+++.-...+ -.+....-..+.-|....|..+.|+.++.+.....- ...+.+.++ .-+..
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~g-----i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL-I~a~~ 660 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYN-----IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL-VDVAG 660 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Confidence 35667788888887765543321 111212222233455566777888888877665421 112222222 22222
Q ss_pred hcCCCCHHHHHHHHHhhcCCC-hhhHHHHHHHHhhhhcCCCchH-HHHHHHHhhhcC-chhHHHHHHHHHhHhccCChhh
Q 001859 501 ALGTADEDIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASEK-AGEMLTYAHETQ-HEKIIRGLALGIALTVYGREEE 577 (1003)
Q Consensus 501 ~~Gs~~e~~~e~L~~~L~~Ds-~~~~e~AalALGLI~~Gs~n~~-a~~LL~~~~et~-~e~i~r~~algLgLl~~G~~e~ 577 (1003)
..|. -+++.+.+.......- +...-..++.-+ |.-.++-+ +..++..+.+.. ...+.-+-++.-|++..|+-+.
T Consensus 661 k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI~a--y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 661 HAGD-LDKAFEILQDARKQGIKLGTVSYSSLMGA--CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred hCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 2232 1456666665553211 111112223323 33344433 335555443322 3344556667777888888898
Q ss_pred HHHHHHHHhcCC--ChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc
Q 001859 578 ADTLIEQMTRDQ--DPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 623 (1003)
Q Consensus 578 ad~lie~L~~~~--d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs 623 (1003)
+..+++.|.... ....-|..++ .+|+..|+.+...+++..+..
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL---~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILL---VASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH---HHHHHCCCHHHHHHHHHHHHH
Confidence 888888776431 1223333322 456678888888888887765
No 74
>PLN03077 Protein ECB2; Provisional
Probab=90.57 E-value=64 Score=41.68 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCCcc---HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001859 201 EVLRLLVKVYQKLPSPD---YLSICQCLMFLDEPEGVVSILEKLLRS 244 (1003)
Q Consensus 201 ~vL~~l~~iy~~~~~~d---y~~~~~~~i~Lnd~~~v~~il~~L~~~ 244 (1003)
+.+++..+....--.|| |..++....++++.+...+++...++.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 34444444433322333 566666667788888888888776644
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=90.12 E-value=67 Score=41.18 Aligned_cols=338 Identities=10% Similarity=0.036 Sum_probs=169.9
Q ss_pred HHHHHHhhcCCCcchhhchhh-hhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHH
Q 001859 384 IYANAIMHAGTTVDTFLRENL-DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 462 (1003)
Q Consensus 384 ~~~nafmnaGt~~D~flr~nl-~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~AL 462 (1003)
.++..+...|-..+. ...+ ..+....+... -...+.-....|...+++..+.+.+... ..+.. +.+.+
T Consensus 88 ~la~~l~~~g~~~eA--~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~------P~~~~--~~~~l 156 (765)
T PRK10049 88 GLILTLADAGQYDEA--LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA------PQTQQ--YPTEY 156 (765)
T ss_pred HHHHHHHHCCCHHHH--HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH--HHHHH
Confidence 444455554433322 2222 24444444444 3334445567899999998888777643 22222 33334
Q ss_pred hhhh--ccchHhHHHHHHhhcccCCc-hhH---HHHHHHHHHHHhcCCC--C----HHHHHHHHHhhcC--CCh--hhH-
Q 001859 463 GLIH--ANHGEGIKQFLRDSLRSTNV-EVI---QHGACLGLGLAALGTA--D----EDIYDDIKNVLYT--DSA--VAG- 525 (1003)
Q Consensus 463 GLI~--~g~~~~al~~L~~~L~~~~~-~~v---r~GA~LGLGla~~Gs~--~----e~~~e~L~~~L~~--Ds~--~~~- 525 (1003)
|.+. .+..++|+..+...+..+.. ... .....+-+.+.-.-+. + +.+++.+...+.. +++ ...
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 4433 44446788888766653110 000 1111111111100000 0 2344444444421 121 111
Q ss_pred -HHHHHHHhhhhcCCCc-hHHHHHHHHhhhcC-c-hhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhh---HHHHH
Q 001859 526 -EAAGISMGLLMVGTAS-EKAGEMLTYAHETQ-H-EKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPIL---RYGGM 598 (1003)
Q Consensus 526 -e~AalALGLI~~Gs~n-~~a~~LL~~~~et~-~-e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~---R~~a~ 598 (1003)
.+-.--+|..+ -.++ .+++..++.+.... . ....+ ..+|...+..|+.+++...++.+...+ |.. .....
T Consensus 237 ~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~ 313 (765)
T PRK10049 237 QRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHH
Confidence 11111144332 3344 45555554333322 2 22222 225777888899999988888776543 221 12333
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHhcCC--------------Chh-HHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchh
Q 001859 599 YALALAYSGTANNKAIRQLLHFAVSDV--------------SDD-VRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHV 663 (1003)
Q Consensus 599 ~alglAyaGTGn~~aI~~LL~~~vsd~--------------~dd-vrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~V 663 (1003)
..++.+|.-.|..+....++..+.+.. +++ .......+-.++..|+.+.+...++.+......+.
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 445667789999877777777655432 111 22233455566666787777777877765443332
Q ss_pred hHHHHHHHHHHhcCCCc-HHHHHHHhhhcC-CChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhh
Q 001859 664 RYGAALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMS 741 (1003)
Q Consensus 664 R~gaalALGl~~aGtg~-~~aIdlL~~l~~-D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~ 741 (1003)
.+-+.+|.++...|+ ..+++.|+.... +|++. .+.+++|++..+..+ ..+..+.+..++...-+|+.+
T Consensus 394 --~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---~l~~~~a~~al~~~~-----~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 394 --GLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---NLEVEQAWTALDLQE-----WRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhCC-----HHHHHHHHHHHHHhCCCCHHH
Confidence 344555556555554 556667777765 66652 245566666666554 344455555555444556655
Q ss_pred HHHH
Q 001859 742 KMGA 745 (1003)
Q Consensus 742 rfga 745 (1003)
....
T Consensus 464 ~~~~ 467 (765)
T PRK10049 464 QRLA 467 (765)
T ss_pred HHHH
Confidence 5443
No 76
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=3.3 Score=50.79 Aligned_cols=332 Identities=18% Similarity=0.138 Sum_probs=174.0
Q ss_pred HHHHHhhccCCCchhHhhHHHHhhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchhhhhhHhhcc
Q 001859 333 RLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATN 412 (1003)
Q Consensus 333 ~l~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~k~~ld~r~s~~~~A~~~~nafmnaGt~~D~flr~nl~Wl~k~~~ 412 (1003)
.+..++.|......++++..++.+..+. +.. -+...+.....+..++-|+..+++=.+.
T Consensus 138 ~~~~l~~~g~~~~~~~~~i~l~~~~a~~----------~~~--~~s~~~~~~~~~~~~~lg~~~ss~~~d~--------- 196 (823)
T KOG2259|consen 138 YLDNLLAIGCPVCEEDIYILLLHGVAKV----------RSS--ISSTGNRLLLYCFHLPLGVSPSSLTHDR--------- 196 (823)
T ss_pred HHHHHHHhccCCCchhhHHHHHhhhHHH----------hhh--cccccchHHHHHHhhhcccCCCcccccH---------
Confidence 3455667777777777777766654221 110 0112234455677777888877743321
Q ss_pred hhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccch--HhHHHHHHhhcccCCchhHH
Q 001859 413 WAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHG--EGIKQFLRDSLRSTNVEVIQ 490 (1003)
Q Consensus 413 w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~--~~al~~L~~~L~~~~~~~vr 490 (1003)
-.++. |+| |+..+ .+..++..|+-||=..+-|.. ........+++.+ .++-||
T Consensus 197 ---~~~~~--~l~--------------~~~~~-----~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD-~~e~VR 251 (823)
T KOG2259|consen 197 ---EHAAR--GLI--------------YLEHD-----QDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSD-DYEDVR 251 (823)
T ss_pred ---HHHHH--HHH--------------HHhcC-----CCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcc-hHHHHH
Confidence 11111 111 12211 133345555444322222322 2344555566665 557888
Q ss_pred HHHHHHHHH---HhcCCC-----CH----HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHH--Hhh---
Q 001859 491 HGACLGLGL---AALGTA-----DE----DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLT--YAH--- 552 (1003)
Q Consensus 491 ~GA~LGLGl---a~~Gs~-----~e----~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~--~~~--- 552 (1003)
..|+-.+-. .+.+.. ++ +++..+-..+..-+-.++--|+-+||-. ++-+++++ ..|. .+.
T Consensus 252 ~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~--~~vSee~i~QTLdKKlms~lR 329 (823)
T KOG2259|consen 252 KAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEF--EQVSEEIIQQTLDKKLMSRLR 329 (823)
T ss_pred HHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchH--HHhHHHHHHHHHHHHHhhhhh
Confidence 877554433 221211 11 3444555555322334555788899943 55555554 2221 111
Q ss_pred --hcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHH
Q 001859 553 --ETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVR 630 (1003)
Q Consensus 553 --et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvr 630 (1003)
.+.|++-.+. .+=|----|++-.+|.--+.+......++-.|++= .++|- .+|.--+||
T Consensus 330 Rkr~ahkrpk~l--~s~GewSsGk~~~advpsee~d~~~~siI~sGACG----------------A~VhG-lEDEf~EVR 390 (823)
T KOG2259|consen 330 RKRTAHKRPKAL--YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACG----------------ALVHG-LEDEFYEVR 390 (823)
T ss_pred hhhhcccchHHH--HhcCCcccCccccccCchhhccccccccccccccc----------------eeeee-chHHHHHHH
Confidence 1112211111 11111112333333333333333334444444321 13332 244445799
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHhhcCCc---hhhHHHHHHHHHHhc-CCCcHHHHHHHhhhcCCChhHHHHHHHHHH
Q 001859 631 RTAVLALGFVLYSEPEQTPRIVSLLSESYNP---HVRYGAALAVGISCA-GTGLSEAISLLEPLTSDVVDFVRQGALIAM 706 (1003)
Q Consensus 631 r~Avl~LGlI~~g~~e~v~~ll~~L~~s~np---~VR~gaalALGl~~a-Gtg~~~aIdlL~~l~~D~dd~Vrq~AiiAL 706 (1003)
++||-+++.+...+|.-+.+.++.|....|. .||--+..+|-.+.. ++=+.+.++.+.....|...+||++.-.-|
T Consensus 391 ~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999888888888876654 689999999966633 334666677666677899999999987666
Q ss_pred HHHhccccccccchHHHHHHHHHHH
Q 001859 707 AMVMVQINEANDSRVGTFRRQLEKI 731 (1003)
Q Consensus 707 GlI~~gt~~a~~pkva~~lr~L~~~ 731 (1003)
+..-.-+-+--+--++.+++.|.+|
T Consensus 471 ~~~~~~d~~~i~m~v~~lL~~L~ky 495 (823)
T KOG2259|consen 471 KNARVSDLECIDMCVAHLLKNLGKY 495 (823)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhhhC
Confidence 6443322221111255566666554
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=89.45 E-value=11 Score=46.13 Aligned_cols=215 Identities=12% Similarity=-0.028 Sum_probs=108.8
Q ss_pred HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchH-HHHHH
Q 001859 471 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEK-AGEML 548 (1003)
Q Consensus 471 ~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~-a~~LL 548 (1003)
+.|+..+.+.+.-..+ ... +...+|.++...++ +++.+.+...+..+..... +-+.+|.++...|+.+ ++..+
T Consensus 321 ~~A~~~~~~Al~ldP~-~~~--a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~--a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 321 IKAKEHAIKATELDHN-NPQ--ALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD--IKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHhcCCC-CHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHH
Confidence 5788888887764221 222 23344555444443 4677777777643322221 3355666666666644 44555
Q ss_pred HHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcC---CChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCC
Q 001859 549 TYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD---QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV 625 (1003)
Q Consensus 549 ~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~---~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~ 625 (1003)
..+.............++..+...|+.+++....+.+... .+|. ....+|.+|...|+.+.....+.-+....
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~----~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI----LLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH----HHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 5444333111111122333455678767666666554432 2232 22446788888999655554444433332
Q ss_pred ChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHH
Q 001859 626 SDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFV 698 (1003)
Q Consensus 626 ~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~V 698 (1003)
.++ ..+...|+-+.++..+.....++.|.+... -|+.-+-.+..+++.-|+++.-.++.++-++.+..+
T Consensus 472 ~~~--~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 540 (553)
T PRK12370 472 ITG--LIAVNLLYAEYCQNSERALPTIREFLESEQ--RIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWF 540 (553)
T ss_pred chh--HHHHHHHHHHHhccHHHHHHHHHHHHHHhh--HhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHhh
Confidence 222 233334443434433455555555543221 222222225556666677777777777766655443
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.33 E-value=8.1 Score=48.43 Aligned_cols=110 Identities=26% Similarity=0.322 Sum_probs=73.4
Q ss_pred HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHH-H---HHH
Q 001859 546 EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQL-L---HFA 621 (1003)
Q Consensus 546 ~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~L-L---~~~ 621 (1003)
.|++|+.+.++. +|+-+ ...+.-..++++.+|..|.=+++- . .+-+|-.+ | +-|
T Consensus 94 YLlrYAEeqpdL----------ALLSI-------ntfQk~L~DpN~LiRasALRvlSs----I-Rvp~IaPI~llAIk~~ 151 (968)
T KOG1060|consen 94 YLLRYAEEQPDL----------ALLSI-------NTFQKALKDPNQLIRASALRVLSS----I-RVPMIAPIMLLAIKKA 151 (968)
T ss_pred HHHHHhhcCCCc----------eeeeH-------HHHHhhhcCCcHHHHHHHHHHHHh----c-chhhHHHHHHHHHHHH
Confidence 677787776652 22211 123333456778888777655542 1 12222222 2 235
Q ss_pred hcCCChhHHHHHHHHHhhhcCCCCC---ChHHHHHHHhhcCCchhhHHHHHHHHHHhcC
Q 001859 622 VSDVSDDVRRTAVLALGFVLYSEPE---QTPRIVSLLSESYNPHVRYGAALAVGISCAG 677 (1003)
Q Consensus 622 vsd~~ddvrr~Avl~LGlI~~g~~e---~v~~ll~~L~~s~np~VR~gaalALGl~~aG 677 (1003)
+.|.++-||+.|+.+|-.+.-=+++ +...+++.|+.+..|.|=-.|++|.--+|+-
T Consensus 152 ~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 152 VTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred hcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 6688899999999999888777664 5677788888999999999999998888775
No 79
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=89.14 E-value=97 Score=41.68 Aligned_cols=179 Identities=10% Similarity=0.124 Sum_probs=90.3
Q ss_pred HHHHHHccccCCchhHHHHHhh--cCCCCCCCCC-chHHHHHHH------HHHHHHHHHHhhhhccccccCCcchHHHHH
Q 001859 68 LLVSKVFYYLGELNDSLSYALG--AGSLFDVSED-SDYVHTLLA------KAIDEYASIKSKAAESNDEAANVDPRLEAI 138 (1003)
Q Consensus 68 ~v~Skvy~~lge~~esL~yaL~--ag~~fd~~~~-~eYv~~l~~------~~id~y~~~~~~~~~~~~~~~~id~~L~~i 138 (1003)
+...++++..|++++|++.--. .+.--+. .. .+|.+++.. +++..|.+..... +. ++++.
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~-~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-------P~-~~~~~-- 184 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPEL-DLAVEYWRLVAKLPAQRPEAINQLQRLNADY-------PG-NTGLR-- 184 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCCh-HHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-------CC-CHHHH--
Confidence 3445678889999999875332 2211111 12 567776653 4666665554431 11 12222
Q ss_pred HHHHHHHHHhcCchhhHHHHHHhccch--------HHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHH
Q 001859 139 VERMLDKCITDGKYQQAMGIAIECRRL--------DKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVY 210 (1003)
Q Consensus 139 v~~~~~~~~~~~~~~~AigialE~~rl--------d~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy 210 (1003)
..+-.-.+..|.+.+|+..+-++-+. +...+.+...........++......+...+.. ......+-+.-
T Consensus 185 -~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~-~~A~~~L~~~~ 262 (1157)
T PRK11447 185 -NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV-AAARSQLAEQQ 262 (1157)
T ss_pred -HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH-HHHHHHHHHHH
Confidence 23334457788999998887665321 111112211122222222332222233333333 22223333322
Q ss_pred hcCCCccHHH--HHHHHHhcCChHHHHHHHHHHHhccCCccHHHHhhhhhcc
Q 001859 211 QKLPSPDYLS--ICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDL 260 (1003)
Q Consensus 211 ~~~~~~dy~~--~~~~~i~Lnd~~~v~~il~~L~~~~~~~~~l~ayQiafdL 260 (1003)
.....|++.. ...+++..++.+.....|++.++. +.++...-+.++.-+
T Consensus 263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~-~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA-NPKDSEALGALGQAY 313 (1157)
T ss_pred HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 2234566642 356788899999999999998753 234454555555443
No 80
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=88.91 E-value=2.9 Score=43.50 Aligned_cols=87 Identities=20% Similarity=0.130 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHhhhcCCCCCChHHHHH---HHhhcCCchhhHHHHHHHHHHhcCC---CcHHHHHHHhhhcCCChhHHH
Q 001859 626 SDDVRRTAVLALGFVLYSEPEQTPRIVS---LLSESYNPHVRYGAALAVGISCAGT---GLSEAISLLEPLTSDVVDFVR 699 (1003)
Q Consensus 626 ~ddvrr~Avl~LGlI~~g~~e~v~~ll~---~L~~s~np~VR~gaalALGl~~aGt---g~~~aIdlL~~l~~D~dd~Vr 699 (1003)
++.||..+++++|=++.+-|..+.+.+. ..+.+.+|.||+.+.++|.-.-... .....+.-+-.+..|+++.||
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 3568899999999777777754443332 2347889999999998887653321 112221222235589999999
Q ss_pred HHHHHHHHHHhcc
Q 001859 700 QGALIAMAMVMVQ 712 (1003)
Q Consensus 700 q~AiiALGlI~~g 712 (1003)
..|...+.-+...
T Consensus 81 ~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 81 SLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988888776
No 81
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.73 E-value=66 Score=39.22 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCChh-HHHHHHHH----HhhhcCCCCC----ChHHHHHHH---hhcCCchhhHHHHHHHHHHhcCCCc
Q 001859 613 AIRQLLHFAVSDVSDD-VRRTAVLA----LGFVLYSEPE----QTPRIVSLL---SESYNPHVRYGAALAVGISCAGTGL 680 (1003)
Q Consensus 613 aI~~LL~~~vsd~~dd-vrr~Avl~----LGlI~~g~~e----~v~~ll~~L---~~s~np~VR~gaalALGl~~aGtg~ 680 (1003)
.+++|...+....+|. .+...+.| .|-++.-+|. ..|.+++.| .++.|+..|-.|.-++|.++...--
T Consensus 244 i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 5666666655433333 33332222 2334433442 224444333 4778999998888899999644211
Q ss_pred HHHH--------H-HHhh---hcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHH
Q 001859 681 SEAI--------S-LLEP---LTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQ 727 (1003)
Q Consensus 681 ~~aI--------d-lL~~---l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~ 727 (1003)
...+ + +|.. ..+....++|..++=|++.|.-..++..+.++..+.+.
T Consensus 324 ~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~ 382 (503)
T PF10508_consen 324 KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITES 382 (503)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 2222 0 1222 22234567888889999988654443232334333333
No 82
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=88.10 E-value=1.1e+02 Score=40.78 Aligned_cols=200 Identities=13% Similarity=-0.020 Sum_probs=112.2
Q ss_pred HHHHhhhhcCCCchHHHH-HHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcC
Q 001859 529 GISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSG 607 (1003)
Q Consensus 529 alALGLI~~Gs~n~~a~~-LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaG 607 (1003)
-..+|.++......+++. +.+.+..... .. ..+.+|..+...|+-+++....+.+...+... ...+.+|.++..
T Consensus 480 ~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd-~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~---~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRDTLPGVALYAWLQAEQRQPD-AW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN---EDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHhCCc-hH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc---HHHHHHHHHHHH
Confidence 356777777655556664 4443332222 22 23445555567888888877777665543221 123456777888
Q ss_pred CCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc-HHHHHH
Q 001859 608 TANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAISL 686 (1003)
Q Consensus 608 TGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~-~~aIdl 686 (1003)
.|+.......++-+.....+.....+.++..+...|+.+.+.+.++...+. +|.. .+-..+|.++.-.|+ .+|+..
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-~P~~--~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-APSA--NAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 999877667776665543333444444444444568887777777665543 3432 334555555555565 557777
Q ss_pred HhhhcC-CChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHH
Q 001859 687 LEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMG 744 (1003)
Q Consensus 687 L~~l~~-D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfg 744 (1003)
+..... +|++- .+...+|.+..+... ..+-+..+.+.+...-.++...+.
T Consensus 632 l~~AL~l~Pd~~---~a~~nLG~aL~~~G~-----~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 632 LRAALELEPNNS---NYQAALGYALWDSGD-----IAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHhCCCCH---HHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 666654 67653 355566766665433 333455555555433444544443
No 83
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=88.08 E-value=24 Score=35.85 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=72.3
Q ss_pred hhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhh--ccchHhHHHHHHhhcccCCchhHHHHHHHHHHHH
Q 001859 423 GVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLA 500 (1003)
Q Consensus 423 G~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~--~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla 500 (1003)
.....|+.++++..+...+... ... ..+...+|.++ .|..+.++.++.+.+..... . ..+...+|.+
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~~~~~~~~ 108 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHD------PDD--YLAYLALALYYQQLGELEKAEDSFRRALTLNPN-N--GDVLNNYGTF 108 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--HHHHHHHHHH
Confidence 3445677777776665544432 112 23444555555 44556788888877764221 1 1244555666
Q ss_pred hcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhccCChhhH
Q 001859 501 ALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEA 578 (1003)
Q Consensus 501 ~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~~e~a 578 (1003)
+...++- ++.+.+...+..........+...+|.++...++.+-. ..+..+.............+|..+...|+-+.+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 5555543 56666666653211111112344566666666654433 444322222211111222333334445555555
Q ss_pred HHHHHHH
Q 001859 579 DTLIEQM 585 (1003)
Q Consensus 579 d~lie~L 585 (1003)
...++..
T Consensus 189 ~~~~~~~ 195 (234)
T TIGR02521 189 RAYLERY 195 (234)
T ss_pred HHHHHHH
Confidence 4444443
No 84
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=43 Score=42.02 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=30.0
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHH----HhhhcCCChhHHHHHHH
Q 001859 648 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISL----LEPLTSDVVDFVRQGAL 703 (1003)
Q Consensus 648 v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdl----L~~l~~D~dd~Vrq~Ai 703 (1003)
|..=+..+.++.||..||-+.+|++.+ +.-.+.+|.- +-+|+.|.|.-+|.-|+
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI--~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKI--LKTHPKAVQAHKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHH--hhhCHHHHHHhHHHHHHHhccCCchhHHHHH
Confidence 333344455666666666666666666 3345555542 33455666666665555
No 85
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.65 E-value=2.3 Score=44.30 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=61.8
Q ss_pred CchhhHHHHHHHHHHhcCCCc--HHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcC
Q 001859 660 NPHVRYGAALAVGISCAGTGL--SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHE 737 (1003)
Q Consensus 660 np~VR~gaalALGl~~aGtg~--~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~ 737 (1003)
||.||..+..++|=.|.--++ ..-++.|-.+++|+++.||..|+..|.-...+..-...+. ++..+.+.+. +.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~---l~~~~l~~l~--D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ---LFSRILKLLV--DE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh---hhHHHHHHHc--CC
Confidence 688999999999966665443 2334578888899999999999999998876654432222 2133444553 57
Q ss_pred ChhhHHHHHHHhhhh
Q 001859 738 DTMSKMGAILASGIL 752 (1003)
Q Consensus 738 d~~~rfga~lAqGLl 752 (1003)
|+.++-.|.....-+
T Consensus 76 ~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 76 NPEIRSLARSFFSEL 90 (178)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888887765544
No 86
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=27 Score=44.15 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=135.5
Q ss_pred CHHHHHHHHHhhcC----CChhhHHHHHHHHhhhhcCCCchHHH-HHHHH---hhhcCchhHHHHHHHHHhHhccCChhh
Q 001859 506 DEDIYDDIKNVLYT----DSAVAGEAAGISMGLLMVGTASEKAG-EMLTY---AHETQHEKIIRGLALGIALTVYGREEE 577 (1003)
Q Consensus 506 ~e~~~e~L~~~L~~----Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~---~~et~~e~i~r~~algLgLl~~G~~e~ 577 (1003)
+++++-+|.+.|.+ ++..+...|--+||-| ++++.+ ++..- +....++.+++-+++++--+...-++.
T Consensus 101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i----~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI----CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred chHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc----CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 45766666666544 4555666677788854 345655 55542 223468888898888877766666666
Q ss_pred HHHHH----HHHhcCCChhhHHHHHHHHHHhhcCCCCH----HHHHHHHHHHh----cCC----------ChhHHHHHHH
Q 001859 578 ADTLI----EQMTRDQDPILRYGGMYALALAYSGTANN----KAIRQLLHFAV----SDV----------SDDVRRTAVL 635 (1003)
Q Consensus 578 ad~li----e~L~~~~d~i~R~~a~~alglAyaGTGn~----~aI~~LL~~~v----sd~----------~ddvrr~Avl 635 (1003)
++-.+ +.|....+-++--+-.+..-+--.+..+. +.+..|.+++- +.. ++-.+.-..-
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 55333 34444443333333333333333332222 22333333321 111 1223444444
Q ss_pred HHhhhcCCCCCChHHHHHHHhhc---CC------chhhHHHHHHHHHHhcCCC-cHHHHHHHhhhcCCChhHHHHHHHHH
Q 001859 636 ALGFVLYSEPEQTPRIVSLLSES---YN------PHVRYGAALAVGISCAGTG-LSEAISLLEPLTSDVVDFVRQGALIA 705 (1003)
Q Consensus 636 ~LGlI~~g~~e~v~~ll~~L~~s---~n------p~VR~gaalALGl~~aGtg-~~~aIdlL~~l~~D~dd~Vrq~AiiA 705 (1003)
-|+++.-++++.-+.+-+.|.+. .+ -.|=|-+...+-.+..-.| ...||+.|.+++..+|...|.-|+-+
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 55666666665544444444422 11 1355556666655555444 57788999999999999999999999
Q ss_pred HHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHH-HHHhhhhc
Q 001859 706 MAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGA-ILASGILD 753 (1003)
Q Consensus 706 LGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga-~lAqGLl~ 753 (1003)
|..+..+.+++ |.+.+-.+...+ ++-|+..|.-+ =+..-|++
T Consensus 337 L~r~V~~d~~a----vqrHr~tIleCL--~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 337 LLRVVQQDPTA----VQRHRSTILECL--KDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHhhhcCCcHH----HHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHhc
Confidence 99999887776 666666666666 45666655443 23434443
No 87
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.30 E-value=5.3 Score=42.64 Aligned_cols=97 Identities=26% Similarity=0.154 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--CCh-HHHHHHHhhcCCchhhHHHHHHHHHHhcCCC------c-----
Q 001859 615 RQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--EQT-PRIVSLLSESYNPHVRYGAALAVGISCAGTG------L----- 680 (1003)
Q Consensus 615 ~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~--e~v-~~ll~~L~~s~np~VR~gaalALGl~~aGtg------~----- 680 (1003)
..||..+. +.+..++..|.-+|--+.-.-+ ..+ ..++.....+.||.+|..++..+..+.-..| .
T Consensus 97 ~~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 97 PPLLKKLG-DSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHc-cccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 34555432 3445566666655554443333 334 6777778889999999999988887766655 1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhcc
Q 001859 681 SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 681 ~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
...+..|.+++.|++..||..|--.+..+...
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999888877543
No 88
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=86.86 E-value=58 Score=38.26 Aligned_cols=280 Identities=11% Similarity=0.033 Sum_probs=123.7
Q ss_pred HHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHH
Q 001859 419 TAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLG 498 (1003)
Q Consensus 419 taSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLG 498 (1003)
.-++--...|+...+...+.+..... ..+....-+.|--....|..+.+..+|.+.++...+..+... +..+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~--~~~a 160 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHA------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE--IART 160 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH--HHHH
Confidence 33444445566666666655433321 222222222222223335556677777776553222111111 1113
Q ss_pred HHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcC--chhHHH--HHHHHHhHhcc
Q 001859 499 LAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQ--HEKIIR--GLALGIALTVY 572 (1003)
Q Consensus 499 la~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~--~e~i~r--~~algLgLl~~ 572 (1003)
.+.+..++ +.+.+.+...+.. .+... .+-..+|.+++..++-+.. +++..+.... ++.... -.-...+++.-
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~-~P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEM-APRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 33333333 3555666655532 22222 2344666667777766554 5555443221 111110 01122333322
Q ss_pred CCh-hhHHHHHHHHhcCCChhh-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHH--HHHHHHhhhcCCCCCCh
Q 001859 573 GRE-EEADTLIEQMTRDQDPIL-RYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRR--TAVLALGFVLYSEPEQT 648 (1003)
Q Consensus 573 G~~-e~ad~lie~L~~~~d~i~-R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr--~Avl~LGlI~~g~~e~v 648 (1003)
|.. +..+.+.+.....++... .....++++-.+...|+.+...+++.-......++... ..+..++.+.-++++..
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 222 223344433333321100 11223344556667777766666666665532222211 13334444433444445
Q ss_pred HHHHHHHhhc--CCchhhHHHHHHHHHHhcCCCcHH-HHHHHh---hhcCCChhHHHHHHHHHHHHHhcccc
Q 001859 649 PRIVSLLSES--YNPHVRYGAALAVGISCAGTGLSE-AISLLE---PLTSDVVDFVRQGALIAMAMVMVQIN 714 (1003)
Q Consensus 649 ~~ll~~L~~s--~np~VR~gaalALGl~~aGtg~~~-aIdlL~---~l~~D~dd~Vrq~AiiALGlI~~gt~ 714 (1003)
...++..... .||. ...-.++|-+|...|+.. |.+.|+ .+..+|++.. .+ .+|.+..+..
T Consensus 319 ~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--~~--~La~ll~~~g 384 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--LA--MAADAFDQAG 384 (409)
T ss_pred HHHHHHHHHhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--HH--HHHHHHHHcC
Confidence 5555444433 2332 344557777777777644 666777 2334666643 22 4555555443
No 89
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=86.61 E-value=1e+02 Score=38.95 Aligned_cols=256 Identities=15% Similarity=0.010 Sum_probs=120.5
Q ss_pred HHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHHH
Q 001859 420 AGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGL 499 (1003)
Q Consensus 420 aSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGl 499 (1003)
.-.|....|+.++++.++..-...+ -..+.++-...+ -+....|..+.+...+...++..-...+.....|.-+.
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g---~~pd~~t~~~ll--~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSG---VSIDQFTFSIMI--RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHH--HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 3446677788888887765543321 011122211111 12233344455655555444432111222222333333
Q ss_pred HhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcC-chhHHHHHHHHHhHhccCChhhH
Q 001859 500 AALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQ-HEKIIRGLALGIALTVYGREEEA 578 (1003)
Q Consensus 500 a~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~-~e~i~r~~algLgLl~~G~~e~a 578 (1003)
+-+|. -+++...+.... ..+.++ .-++.-|+...|-. .++.+++..+.+.. .....-+.++--|+..-|.-+.+
T Consensus 371 ~k~G~-~~~A~~vf~~m~-~~d~~t--~n~lI~~y~~~G~~-~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 371 SKWGR-MEDARNVFDRMP-RKNLIS--WNALIAGYGNHGRG-TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHCCC-HHHHHHHHHhCC-CCCeee--HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 33332 135555555443 222222 23333344444443 33446665444332 34455566666677777888888
Q ss_pred HHHHHHHhcC--CChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh
Q 001859 579 DTLIEQMTRD--QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 656 (1003)
Q Consensus 579 d~lie~L~~~--~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~ 656 (1003)
..+.+.+... -.|-...-.+++ -+|+-.|..+...++++-.. ..+++.-+-.+.-|+-..|+.+....+.+.+.
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li--~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMI--ELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHH--HHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 8888777542 123222222222 34556677766666666432 22333333333334445577777777777666
Q ss_pred hcCCchhhHHHHHHHHHHhcCCCcH-HHHHHHhhhc
Q 001859 657 ESYNPHVRYGAALAVGISCAGTGLS-EAISLLEPLT 691 (1003)
Q Consensus 657 ~s~np~VR~gaalALGl~~aGtg~~-~aIdlL~~l~ 691 (1003)
+..-..+..-+.++ -+|+..|+. +|.++++.|.
T Consensus 522 ~~~p~~~~~y~~L~--~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 522 GMGPEKLNNYVVLL--NLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCCCCCCcchHHHH--HHHHhCCCHHHHHHHHHHHH
Confidence 54433333333333 344455543 4445555544
No 90
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=85.99 E-value=0.86 Score=37.81 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhh
Q 001859 697 FVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGIL 752 (1003)
Q Consensus 697 ~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 752 (1003)
.||.+|+.+||-+..+......|.+.+++..|...+. +.++.+|-.++.|+|-|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~--d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ--DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence 5899999999987766666666777788888888884 46679999999999854
No 91
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=85.72 E-value=6.8 Score=47.82 Aligned_cols=165 Identities=22% Similarity=0.305 Sum_probs=109.6
Q ss_pred chhhHHHHHhhhhccchH--h------HHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhH
Q 001859 454 SEGGALYALGLIHANHGE--G------IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAG 525 (1003)
Q Consensus 454 ~k~GAl~ALGLI~~g~~~--~------al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~ 525 (1003)
+......-+|.|+.+..+ + +-=-|.+.|++ .+..+|..|.-.+|.|.-..+-.++++.|.+-|....-..+
T Consensus 704 v~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~R 782 (975)
T COG5181 704 VVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS-WNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQR 782 (975)
T ss_pred HhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhh
Confidence 455556667888876543 1 22224466776 45899999999999998777778999999998865444555
Q ss_pred HHHHHHHhhh--hcCCCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhc--cCChh-----hHHHHHHHHhcCCChhhHH
Q 001859 526 EAAGISMGLL--MVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTV--YGREE-----EADTLIEQMTRDQDPILRY 595 (1003)
Q Consensus 526 e~AalALGLI--~~Gs~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~--~G~~e-----~ad~lie~L~~~~d~i~R~ 595 (1003)
-+.++|+|.| +.|. -.++ .|+. -.+|.+..+..|.--+++++| +|+.. .+-++++--..+.||+-|.
T Consensus 783 vctsvaI~iVae~cgp--fsVlP~lm~-dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRq 859 (975)
T COG5181 783 VCTSVAISIVAEYCGP--FSVLPTLMS-DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQ 859 (975)
T ss_pred hhhhhhhhhhHhhcCc--hhhHHHHHh-cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHH
Confidence 5667777755 2222 2344 4443 124556677777777777764 44331 2346666667788999998
Q ss_pred HHHHH---HHHhhcCCCCHHHHHHHHHHHh
Q 001859 596 GGMYA---LALAYSGTANNKAIRQLLHFAV 622 (1003)
Q Consensus 596 ~a~~a---lglAyaGTGn~~aI~~LL~~~v 622 (1003)
.++-+ ++|...|||+.++.=-||+++-
T Consensus 860 ta~nvI~Hl~Lnc~gtg~eda~IHLlNllw 889 (975)
T COG5181 860 TAMNVIRHLVLNCPGTGDEDAAIHLLNLLW 889 (975)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHhh
Confidence 88744 3456679999988777877754
No 92
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.44 E-value=1.1 Score=33.29 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=18.9
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHHh
Q 001859 684 ISLLEPLTSDVVDFVRQGALIAMAMVM 710 (1003)
Q Consensus 684 IdlL~~l~~D~dd~Vrq~AiiALGlI~ 710 (1003)
+..|-.+.+|++..||++|+.++|-+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345556677888888888888887664
No 93
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.94 E-value=43 Score=41.95 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=92.0
Q ss_pred hhhcC-chhHHHHHHHH-HhHhcc--C--ChhhHHHHHHHHh---cCCChhhHHHHHHHHHHhhcCCCC--HHHHHHHHH
Q 001859 551 AHETQ-HEKIIRGLALG-IALTVY--G--REEEADTLIEQMT---RDQDPILRYGGMYALALAYSGTAN--NKAIRQLLH 619 (1003)
Q Consensus 551 ~~et~-~e~i~r~~alg-LgLl~~--G--~~e~ad~lie~L~---~~~d~i~R~~a~~alglAyaGTGn--~~aI~~LL~ 619 (1003)
++.++ +++-+||.++- |+++.= + .++..+.+.+.|. .+..|.+|..|+++++=---.++| ..++..+..
T Consensus 91 LRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~ 170 (892)
T KOG2025|consen 91 LRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKD 170 (892)
T ss_pred HhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 34444 55555665543 555433 2 3344566666654 367899999999887532223444 478888888
Q ss_pred HHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHH-HHH-hcCCCcHHHHHHHhhhcCCChhH
Q 001859 620 FAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAV-GIS-CAGTGLSEAISLLEPLTSDVVDF 697 (1003)
Q Consensus 620 ~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalAL-Gl~-~aGtg~~~aIdlL~~l~~D~dd~ 697 (1003)
....|.+++|||+|...|. -++...|-+++.- .+-+-.+|+.+=--+ --+ ...-.-..-+.+|+.-+.|.+..
T Consensus 171 liqnDpS~EVRRaaLsnI~----vdnsTlp~IveRa-rDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~s 245 (892)
T KOG2025|consen 171 LIQNDPSDEVRRAALSNIS----VDNSTLPCIVERA-RDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFS 245 (892)
T ss_pred HHhcCCcHHHHHHHHHhhc----cCcccchhHHHHh-hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhH
Confidence 8889999999999988875 4555666666643 333444454321111 000 00001123345888888999999
Q ss_pred HHHHHHHHHH
Q 001859 698 VRQGALIAMA 707 (1003)
Q Consensus 698 Vrq~AiiALG 707 (1003)
|++++.-++.
T Consensus 246 Vk~A~~d~il 255 (892)
T KOG2025|consen 246 VKGALVDAIL 255 (892)
T ss_pred HHHHHHHHHH
Confidence 9998875544
No 94
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.52 E-value=1.1e+02 Score=37.72 Aligned_cols=255 Identities=15% Similarity=0.104 Sum_probs=135.5
Q ss_pred hHHHHHHhhcccCCchhHHHHHHHHHHHHhc--CCCCHHHHHHHHHhh----cCCChhhHHHHHHHHhhhhcCCCchHHH
Q 001859 472 GIKQFLRDSLRSTNVEVIQHGACLGLGLAAL--GTADEDIYDDIKNVL----YTDSAVAGEAAGISMGLLMVGTASEKAG 545 (1003)
Q Consensus 472 ~al~~L~~~L~~~~~~~vr~GA~LGLGla~~--Gs~~e~~~e~L~~~L----~~Ds~~~~e~AalALGLI~~Gs~n~~a~ 545 (1003)
..+.-|.+.+.+.++...|-++.++.-.... |...|+-+-.+.+.+ .+.....|++|..+.=.|+--.....+-
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 4667777777764433444467666655433 333343333333333 2223456776655554444322222121
Q ss_pred HHH----HHhhhcCchhHHHHHHHHHhHhccCChhh--------HHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHH
Q 001859 546 EML----TYAHETQHEKIIRGLALGIALTVYGREEE--------ADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKA 613 (1003)
Q Consensus 546 ~LL----~~~~et~~e~i~r~~algLgLl~~G~~e~--------ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~a 613 (1003)
.++ .-+.++ ..+......-.||.+.+..+.+ +..+.+.|. +.+|-+|..+.
T Consensus 254 ~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~-DT~~evr~a~~--------------- 316 (569)
T KOG1242|consen 254 LLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW-DTKPEVRKAGI--------------- 316 (569)
T ss_pred HhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc-cCCHHHHHHHH---------------
Confidence 222 222222 2222333444555555555433 333444433 44566666543
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC-ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcC
Q 001859 614 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE-QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS 692 (1003)
Q Consensus 614 I~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e-~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~ 692 (1003)
..|+.++.--.++++.+..-..+= ++++|+ ..+..+..|..- -+|-+-.+-+|+++ +-+|++-+.
T Consensus 317 -~~l~~~~svidN~dI~~~ip~Lld--~l~dp~~~~~e~~~~L~~t--tFV~~V~~psLalm---------vpiL~R~l~ 382 (569)
T KOG1242|consen 317 -ETLLKFGSVIDNPDIQKIIPTLLD--ALADPSCYTPECLDSLGAT--TFVAEVDAPSLALM---------VPILKRGLA 382 (569)
T ss_pred -HHHHHHHHhhccHHHHHHHHHHHH--HhcCcccchHHHHHhhcce--eeeeeecchhHHHH---------HHHHHHHHh
Confidence 334444433345556555544443 346776 566666655432 24555555555554 557888888
Q ss_pred CChhHHHHHHHHHHHHHhccccccc--cchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCce
Q 001859 693 DVVDFVRQGALIAMAMVMVQINEAN--DSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNV 759 (1003)
Q Consensus 693 D~dd~Vrq~AiiALGlI~~gt~~a~--~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~ 759 (1003)
+.+...++.+++..+....=.++.. .|-+-.++..|.+.+. .-+|.+|.-+.-|+|-+.=+=|+.
T Consensus 383 eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~--d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 383 ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD--DAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc--CCChhHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888887766553322 2334445555666653 347999999999999887554443
No 95
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=84.49 E-value=18 Score=37.57 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=53.7
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhcC-CCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccc
Q 001859 650 RIVSLLSESYNPHVRYGAALAVGISCAG-TGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 715 (1003)
Q Consensus 650 ~ll~~L~~s~np~VR~gaalALGl~~aG-tg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~ 715 (1003)
.++.....+.|+++|+.+...+.-.+.. +--...++++..+.+|.+.+|+.+.--+|.-++...++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 6788889999999999998888665444 34455667999999999999999999999988886544
No 96
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=84.42 E-value=1.1e+02 Score=38.04 Aligned_cols=223 Identities=12% Similarity=0.050 Sum_probs=120.4
Q ss_pred HHHHHhhhh--ccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhh
Q 001859 458 ALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGL 534 (1003)
Q Consensus 458 Al~ALGLI~--~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGL 534 (1003)
+...+|.++ .|..++|+..+.+.+.... . ...+.+.+|.++...++ +++.+.+...+..+.... .+-+.+|.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~lg~ 407 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDP-R--VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHRAQ 407 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence 455566665 5566789999988887422 1 12355667777666555 467777777664332211 23455666
Q ss_pred hhcCCCchH-HHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhc-CC-ChhhHHHHHHHHHHhhcCCCCH
Q 001859 535 LMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQ-DPILRYGGMYALALAYSGTANN 611 (1003)
Q Consensus 535 I~~Gs~n~~-a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~-~~-d~i~R~~a~~alglAyaGTGn~ 611 (1003)
++.-.|+-+ ++..++.+.+...+.+.....+|..+...|+-+.+...++.... .+ ++. ....+|.+|...|+.
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD----VYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHccCH
Confidence 666666544 33555544443333334444566666677887777766665443 22 222 223467788889997
Q ss_pred HHHHHHHHHHhcCC-C-hh--HHHHHHHHHhhhcC---CCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc-HHH
Q 001859 612 KAIRQLLHFAVSDV-S-DD--VRRTAVLALGFVLY---SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEA 683 (1003)
Q Consensus 612 ~aI~~LL~~~vsd~-~-dd--vrr~Avl~LGlI~~---g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~-~~a 683 (1003)
....+.+..+..-. . +. ......++.+.+.+ ++.+.+..+++...+.. |.... +-..+|.++.-.|+ .+|
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~-a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDI-AVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHH-HHHHHHHHHHHccCHHHH
Confidence 65555555554421 1 11 12223333333332 44455555555543332 22211 33456666666664 557
Q ss_pred HHHHhhhc
Q 001859 684 ISLLEPLT 691 (1003)
Q Consensus 684 IdlL~~l~ 691 (1003)
+..++...
T Consensus 562 i~~~e~A~ 569 (615)
T TIGR00990 562 LKLFERAA 569 (615)
T ss_pred HHHHHHHH
Confidence 77666654
No 97
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.26 E-value=8.5 Score=51.26 Aligned_cols=225 Identities=19% Similarity=0.241 Sum_probs=107.4
Q ss_pred chhhHHHHHhhh-hccchH-------hHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH----HHHHHHHHhhcCC-
Q 001859 454 SEGGALYALGLI-HANHGE-------GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE----DIYDDIKNVLYTD- 520 (1003)
Q Consensus 454 ~k~GAl~ALGLI-~~g~~~-------~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e----~~~e~L~~~L~~D- 520 (1003)
.++|..-=|.+| |+|+.. ++.......|.+ ++++++--|.-|||++| +-+|. ++.+.|.+.|...
T Consensus 835 R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlglVY-elgd~~~k~~LV~sL~~tl~~Gk 912 (1702)
T KOG0915|consen 835 RQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLGLVY-ELGDSSLKKSLVDSLVNTLTGGK 912 (1702)
T ss_pred HHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc-cHHHHHHHHhcCceEEE-ecCCchhHHHHHHHHHHHHhccc
Confidence 345544444444 556432 345555566665 67999999999999998 44443 5666666655332
Q ss_pred ---ChhhHHHHHHHHhhhhcC-CCch---HHH-HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCCChh
Q 001859 521 ---SAVAGEAAGISMGLLMVG-TASE---KAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPI 592 (1003)
Q Consensus 521 ---s~~~~e~AalALGLI~~G-s~n~---~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~d~i 592 (1003)
..+.++.-.+.=| .+| |++. .-. +|+..+.|- |+++-+...++.-.+.----
T Consensus 913 r~~~~vs~eTelFq~G--~Lg~Tp~Gg~isTYKELc~LASdl------------------~qPdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 913 RKAIKVSEETELFQEG--TLGKTPDGGKISTYKELCNLASDL------------------GQPDLVYKFMQLANHNATWN 972 (1702)
T ss_pred cccceeccchhcccCC--cCCCCCCCCcchHHHHHHHHHhhc------------------CChHHHHHHHHHhhhhchhh
Confidence 2234444444444 334 3332 222 666655442 22333333332222222223
Q ss_pred hHHHHHHHHHHhhcCCCCH------HHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC-CChHHHHHHHh-------hc
Q 001859 593 LRYGGMYALALAYSGTANN------KAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP-EQTPRIVSLLS-------ES 658 (1003)
Q Consensus 593 ~R~~a~~alglAyaGTGn~------~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~-e~v~~ll~~L~-------~s 658 (1003)
.|.|+++..|-.-.-.|.. +-|-+|..+ .-|.+..|++ |..+|=-.+..++ .++++.+...+ .+
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTS 1050 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc
Confidence 3444444433222222110 111122222 1233444444 3333332333443 34443333222 34
Q ss_pred CCchhhHHHHHHHHHHhcCCCcHHHHH-------HHhhhcCCChhHHHHHH
Q 001859 659 YNPHVRYGAALAVGISCAGTGLSEAIS-------LLEPLTSDVVDFVRQGA 702 (1003)
Q Consensus 659 ~np~VR~gaalALGl~~aGtg~~~aId-------lL~~l~~D~dd~Vrq~A 702 (1003)
...-||-++|+||.=+--|.++.+.++ .+-+.+.|--+-||-+|
T Consensus 1051 kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa 1101 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAA 1101 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677778888777777777666655 22333455556666554
No 98
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=84.05 E-value=95 Score=36.49 Aligned_cols=260 Identities=14% Similarity=0.056 Sum_probs=139.0
Q ss_pred HHHHHHhhcCCCcchhhchhh-hhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHH
Q 001859 384 IYANAIMHAGTTVDTFLRENL-DWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYAL 462 (1003)
Q Consensus 384 ~~~nafmnaGt~~D~flr~nl-~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~AL 462 (1003)
.+..|++....++-.-.+..+ .......+|......++-.....|+.+.+...+....... +++.......++-
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~l~~~~~~a~ 161 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCchHHHHHHHH
Confidence 467788887766643333222 1233334454444455555566788888877776654432 1222223333455
Q ss_pred hhhhccchHhHHHHHHhhcccC-CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC---CChhhHH-HHHHHHhhhh
Q 001859 463 GLIHANHGEGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT---DSAVAGE-AAGISMGLLM 536 (1003)
Q Consensus 463 GLI~~g~~~~al~~L~~~L~~~-~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~---Ds~~~~e-~AalALGLI~ 536 (1003)
=.+..+..+.|+..+...+... ++. .+..-+|.+++..++- .+.+.|...+.. +...... ......|++-
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5566677778888888877653 222 3456777777777765 344444444422 1111111 1122334332
Q ss_pred cCCCchHHHHHHHHhhhcC---chhHHHHHHHHHhHhccCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHhhcCCCCHH
Q 001859 537 VGTASEKAGEMLTYAHETQ---HEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNK 612 (1003)
Q Consensus 537 ~Gs~n~~a~~LL~~~~et~---~e~i~r~~algLgLl~~G~~e~ad~lie~L~~-~~d~i~R~~a~~alglAyaGTGn~~ 612 (1003)
-|........+........ .....-..+++-.++..|+.+.+..+++.... .+|...... .......+...+|..
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChH
Confidence 2211111112333222221 12445556677788899988888777766554 444321110 133455566678877
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC--CChHHHHH
Q 001859 613 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP--EQTPRIVS 653 (1003)
Q Consensus 613 aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~--e~v~~ll~ 653 (1003)
...+++........++.......++|.++++.. +.+...++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 777777666665555544456778888887754 44555565
No 99
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=83.93 E-value=1.3e+02 Score=38.10 Aligned_cols=226 Identities=20% Similarity=0.279 Sum_probs=125.8
Q ss_pred ccCCChhHHHHHHHHHHHHHHhhhhHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCC----------------
Q 001859 16 LNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGE---------------- 79 (1003)
Q Consensus 16 L~e~d~~l~~~AL~~L~~~v~~~w~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge---------------- 79 (1003)
++.-.+-.+..||+.|.+--++|=+ .+-+.+|--+.-+.+.....|.|.--|+-.|.|.|++
T Consensus 372 vKNG~ppmRk~~LR~ltdkar~~ga--~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepl 449 (1172)
T KOG0213|consen 372 VKNGTPPMRKSALRILTDKARNFGA--GPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPL 449 (1172)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhcc--HHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecc
Confidence 3455566778888888777776644 2234555555555554434566665666666666654
Q ss_pred -c----------hhHHH-HHhhcC-------CCCCCCCCchHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHH
Q 001859 80 -L----------NDSLS-YALGAG-------SLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVE 140 (1003)
Q Consensus 80 -~----------~esL~-yaL~ag-------~~fd~~~~~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~ 140 (1003)
+ +|-+. .+-.+| -.-|++...||||...+......+..-. + +.|..+.+
T Consensus 450 lided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalg-----------i-p~llpfLk 517 (1172)
T KOG0213|consen 450 LIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG-----------I-PALLPFLK 517 (1172)
T ss_pred eecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC-----------c-HHHHHHHH
Confidence 1 12222 222223 1237888899999999988877765321 2 34444433
Q ss_pred HHHHH--HHh--cC--chhhHHHHHHhccchHHH-------HHHHhccCChhh-----HHHHHHHhcccCCCChHHHHHH
Q 001859 141 RMLDK--CIT--DG--KYQQAMGIAIECRRLDKL-------EEAITRSDNVHG-----TLSYCINVSHSFVNRREYRREV 202 (1003)
Q Consensus 141 ~~~~~--~~~--~~--~~~~AigialE~~rld~l-------~~~i~~~~~~~~-----~~~Y~~~~~~~~v~~~~fr~~v 202 (1003)
..-.. ..+ |- ...|-|+|++=+-+|--| +..+......-| .+.|+...+..+ .-..| +.|
T Consensus 518 avc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Py-gie~f-DsV 595 (1172)
T KOG0213|consen 518 AVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPY-GIEQF-DSV 595 (1172)
T ss_pred HHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCc-chHHH-HHH
Confidence 32110 000 10 123456777777776433 333332233333 466777766544 33456 678
Q ss_pred HHHHHHHHhcCC---CccHHHHHHHHHhcCChHHH----HHHHHHHHhccCCcc-------HHHHhhhh
Q 001859 203 LRLLVKVYQKLP---SPDYLSICQCLMFLDEPEGV----VSILEKLLRSENKDD-------ALLAFQIA 257 (1003)
Q Consensus 203 L~~l~~iy~~~~---~~dy~~~~~~~i~Lnd~~~v----~~il~~L~~~~~~~~-------~l~ayQia 257 (1003)
|+.|.+=-++.. ..-|..++-.++.|-|++.. .+++..|++.++..| ..+-.|+|
T Consensus 596 lkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc 664 (1172)
T KOG0213|consen 596 LKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCC 664 (1172)
T ss_pred HHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHh
Confidence 888887666542 23566677777788887754 445555666555566 33446666
No 100
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.59 E-value=13 Score=39.55 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhhhcCCCCC--------ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-cHHH-HHHHhhhcCCChh
Q 001859 627 DDVRRTAVLALGFVLYSEPE--------QTPRIVSLLSESYNPHVRYGAALAVGISCAGTG-LSEA-ISLLEPLTSDVVD 696 (1003)
Q Consensus 627 ddvrr~Avl~LGlI~~g~~e--------~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg-~~~a-IdlL~~l~~D~dd 696 (1003)
..|.+.|...++.++..-.. .++.+++.+ .+.+..+|-.+.-+|-.++-..+ ...+ +..|....++.+.
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNP 145 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCH
Confidence 34555565555555443221 123333332 44577899999999988888777 5666 6799999999999
Q ss_pred HHHHHHHHHHHHHhcccc---ccccc--hHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhc
Q 001859 697 FVRQGALIAMAMVMVQIN---EANDS--RVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 753 (1003)
Q Consensus 697 ~Vrq~AiiALGlI~~gt~---~a~~p--kva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 753 (1003)
.||..++.-+..+....+ ..... -+..+.+.+.+.++ +.++.+|-.++-++..++
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH
Confidence 999999998988877665 11111 13567777888874 688999999988777664
No 101
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=83.12 E-value=1.3e+02 Score=37.40 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=87.6
Q ss_pred HHHHHhhhcCchhHHHHHHHHHhHh--ccCChhhHHHHHHHHhcCCChhhHHHHHHHHHH--hhcCCCCHHHHHHHHHHH
Q 001859 546 EMLTYAHETQHEKIIRGLALGIALT--VYGREEEADTLIEQMTRDQDPILRYGGMYALAL--AYSGTANNKAIRQLLHFA 621 (1003)
Q Consensus 546 ~LL~~~~et~~e~i~r~~algLgLl--~~G~~e~ad~lie~L~~~~d~i~R~~a~~algl--AyaGTGn~~aI~~LL~~~ 621 (1003)
+|+..+..+ +.+++|.+.-.+|+| .+|-++..+.+++.|... +.-.|-+..+++|. -|||.=+ ++-.|+.-.
T Consensus 734 eLvd~Lks~-nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgpfs--VlP~lm~dY 809 (975)
T COG5181 734 ELVDSLKSW-NKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGPFS--VLPTLMSDY 809 (975)
T ss_pred HHHHHHHHh-hHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCchh--hHHHHHhcc
Confidence 444433332 567888888888888 688888889888888753 34455555554443 3555543 444444332
Q ss_pred hcCCChhHHHHHHHHHhhhcC--CCC-----CChHHHHHHHhhcCCchhhHHHHHH---HHHHhcCCCcHHHH-H---HH
Q 001859 622 VSDVSDDVRRTAVLALGFVLY--SEP-----EQTPRIVSLLSESYNPHVRYGAALA---VGISCAGTGLSEAI-S---LL 687 (1003)
Q Consensus 622 vsd~~ddvrr~Avl~LGlI~~--g~~-----e~v~~ll~~L~~s~np~VR~gaalA---LGl~~aGtg~~~aI-d---lL 687 (1003)
++.+-.|+....-+++|.+- |+. -.+..+++--+.+.||.-|-.++-. |.+-|.|||..++. . +|
T Consensus 810 -~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNll 888 (975)
T COG5181 810 -ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLL 888 (975)
T ss_pred -cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHh
Confidence 23444566665555555432 222 1234455555677888777665521 23348899987764 3 44
Q ss_pred hhhcCCChhHHHHH
Q 001859 688 EPLTSDVVDFVRQG 701 (1003)
Q Consensus 688 ~~l~~D~dd~Vrq~ 701 (1003)
.+-.-++.+-|.|.
T Consensus 889 wpNIle~sPhvi~~ 902 (975)
T COG5181 889 WPNILEPSPHVIQS 902 (975)
T ss_pred hhhccCCCcHHHHH
Confidence 45455666665554
No 102
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=82.83 E-value=40 Score=37.58 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=86.7
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHH-------HHH--HHHHhhhcCC
Q 001859 573 GREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVR-------RTA--VLALGFVLYS 643 (1003)
Q Consensus 573 G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvr-------r~A--vl~LGlI~~g 643 (1003)
-|++-.-++-+.+...+||++|.+--++ --|+ +.+.++..++...+...+..+ ..+ +=++|++
T Consensus 85 aRr~GlLaLE~~~~~~~d~fl~~gl~l~----vdg~-~~e~i~~~le~~~~~~~~~~~~~~~~l~~~a~~AP~lGll--- 156 (254)
T PRK06743 85 SKKHGLLSLEVDGEQVDNPFIQKGIRLM----LSGY-DEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMI--- 156 (254)
T ss_pred HHhcCHHHHHhhccCCccHHHHHHHHHH----HCCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---
Confidence 3555555555566667789988874332 2366 788888888876553322221 122 2235555
Q ss_pred CCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhc----CCChhHHHHHHHHHHHHHhccccccccc
Q 001859 644 EPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLT----SDVVDFVRQGALIAMAMVMVQINEANDS 719 (1003)
Q Consensus 644 ~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~----~D~dd~Vrq~AiiALGlI~~gt~~a~~p 719 (1003)
-.+.-++..+....||.. -|..+|.++...-.|-.-+.=+..|+. ......+++.-++-=|+++++.. .+|
T Consensus 157 --GTVlGLI~~~~~l~~p~~-lg~gIa~ALvtT~yGl~~An~~~~Pia~kL~~~~~~e~~~~~~iiegi~~i~~g--~nP 231 (254)
T PRK06743 157 --GTLIGLIIMLQNLQDTSQ-IGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFVIEAISELYRG--QIP 231 (254)
T ss_pred --HHHHHHHHHhHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCh
Confidence 235666666666556643 555566555544334444444444443 35566777777888888888765 468
Q ss_pred hHHHHHHHHHHHHh
Q 001859 720 RVGTFRRQLEKIIL 733 (1003)
Q Consensus 720 kva~~lr~L~~~~~ 733 (1003)
++ +.+.|..|+.
T Consensus 232 r~--i~~kL~~~l~ 243 (254)
T PRK06743 232 SK--LKLKLDTYVY 243 (254)
T ss_pred HH--HHHHHHHhCC
Confidence 87 5777887763
No 103
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=81.02 E-value=58 Score=36.23 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=60.9
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHH-------HHHHHHHHhcCCCcHHHHHHHhhhcCCC--hhHHHHHH
Q 001859 632 TAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYG-------AALAVGISCAGTGLSEAISLLEPLTSDV--VDFVRQGA 702 (1003)
Q Consensus 632 ~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~g-------aalALGl~~aGtg~~~aIdlL~~l~~D~--dd~Vrq~A 702 (1003)
.|..-||- +++.+..+.+++++.++.++.-.+. .+-+++.. |.|+.+ .|..+..|+ +.+||.+|
T Consensus 61 ~a~~LLaq--~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv--~~G~~~---~L~~li~~~~~~~yvR~aa 133 (249)
T PF06685_consen 61 YALYLLAQ--FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV--GDGDIE---PLKELIEDPDADEYVRMAA 133 (249)
T ss_pred HHHHHHHH--HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH--hCCCHH---HHHHHHhCCcHHHHHHHHH
Confidence 34444453 3777889999999988877643333 23334444 445644 445555554 67899999
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHH
Q 001859 703 LIAMAMVMVQINEANDSRVGTFRRQLEKII 732 (1003)
Q Consensus 703 iiALGlI~~gt~~a~~pkva~~lr~L~~~~ 732 (1003)
+-||+.+.......|..-+.-+++.|...+
T Consensus 134 ~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l 163 (249)
T PF06685_consen 134 ISALAFLVHEGPISREEVIQYFRELLNYFL 163 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 999999998888877554555555555445
No 104
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.97 E-value=43 Score=35.30 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCCh-hH-HHHHHHHHhhhcCCCCCChHHHHHHHh
Q 001859 579 DTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSD-DV-RRTAVLALGFVLYSEPEQTPRIVSLLS 656 (1003)
Q Consensus 579 d~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~d-dv-rr~Avl~LGlI~~g~~e~v~~ll~~L~ 656 (1003)
..+...|-....--.|+.+++.++- +....+...+..+- ..+.+.+. ++ -.++.-.+|-+.... +....++....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~-~~~~~~~~~~~~~~-~~~~~~~~W~~~D~~~~~~~~~~~~~~-~~~~~~~~~W~ 129 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDK-RRKKLTEEDLELLE-KWLPDIDNWATCDSLCSKLLGPLLKKH-PEALELLEKWA 129 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHH-CGGG--HHHHHHHH-HCCCCCCCHHHHHHHTHHHHHHHHHHH-GGHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHH-HhhhhhHHHHHHHH-HHhccCCcchhhhHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 3445555555545556665555432 11233333333333 33443332 22 233233334332222 44566777788
Q ss_pred hcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccc
Q 001859 657 ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 715 (1003)
Q Consensus 657 ~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~ 715 (1003)
++.|+.+|+.+..++--....+.-....+++..+.+|++.+||.+.--+|.-++...++
T Consensus 130 ~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 130 KSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp HCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred hCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999877744333322344456888899999999999988888877775544
No 105
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=79.70 E-value=2.2 Score=31.18 Aligned_cols=29 Identities=38% Similarity=0.336 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCC
Q 001859 662 HVRYGAALAVGISCAGTGLSEAISLLEPLTSDV 694 (1003)
Q Consensus 662 ~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~ 694 (1003)
.||+.++.+||-+ |++.+++.|..+++|+
T Consensus 2 ~vR~~aa~aLg~~----~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL----GDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc----CCHhHHHHHHHHhcCC
Confidence 5788888888876 6788888777766653
No 106
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=2.2e+02 Score=37.62 Aligned_cols=85 Identities=21% Similarity=0.160 Sum_probs=51.3
Q ss_pred CCCCCchhhHHHHHhhhhccch----HhHHHHHHhhcccCCchhHHHHHHHHHHHHh-cCCCCH----HHHHHHHHhhcC
Q 001859 449 GGSPYSEGGALYALGLIHANHG----EGIKQFLRDSLRSTNVEVIQHGACLGLGLAA-LGTADE----DIYDDIKNVLYT 519 (1003)
Q Consensus 449 ~~~~y~k~GAl~ALGLI~~g~~----~~al~~L~~~L~~~~~~~vr~GA~LGLGla~-~Gs~~e----~~~e~L~~~L~~ 519 (1003)
+++..++.+|.-++|-|+.--. ++++.-..+++.--+++..-|||||+|+..+ .|---. ++...+..-|.-
T Consensus 352 d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Y 431 (1133)
T KOG1943|consen 352 DTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHY 431 (1133)
T ss_pred CCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhh
Confidence 4577888999999999987554 3455555554443334677889999998753 333223 444444443321
Q ss_pred C--------ChhhHHHHHHHHh
Q 001859 520 D--------SAVAGEAAGISMG 533 (1003)
Q Consensus 520 D--------s~~~~e~AalALG 533 (1003)
| ...+|.+|++.+=
T Consensus 432 d~~~G~~s~G~~VRDaAcY~~W 453 (1133)
T KOG1943|consen 432 DVRRGQHSVGQHVRDAACYVCW 453 (1133)
T ss_pred hhhhcccccccchHHHHHHHHH
Confidence 2 2345667776544
No 107
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=79.23 E-value=2.4e+02 Score=37.99 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=63.9
Q ss_pred HhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccc--hHhHHHHHHhhcccCC-chh---------
Q 001859 421 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANH--GEGIKQFLRDSLRSTN-VEV--------- 488 (1003)
Q Consensus 421 SLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~--~~~al~~L~~~L~~~~-~~~--------- 488 (1003)
+...+..|+.++++..+.+.+..+ ... ..+.+.||.++... .++|+.++.+.+.... +..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~------P~~--~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN------PKD--SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 344556777778877776666542 111 34566677666544 3578888877775321 111
Q ss_pred -HHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHH
Q 001859 489 -IQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLT 549 (1003)
Q Consensus 489 -vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~ 549 (1003)
.+.-..+.+|.++...++ +++...+...+..+... ..|-+.||.++...++.+.. ..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~--~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD--SYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 012233445555555544 36666666666433211 12455667777766665433 4444
No 108
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=79.16 E-value=7.5 Score=43.15 Aligned_cols=64 Identities=27% Similarity=0.302 Sum_probs=38.1
Q ss_pred ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH------HHhhhcCCChhHHHHHHHHHHHHHh
Q 001859 647 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS------LLEPLTSDVVDFVRQGALIAMAMVM 710 (1003)
Q Consensus 647 ~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId------lL~~l~~D~dd~Vrq~AiiALGlI~ 710 (1003)
...+++..|..+.||.++.-+..++|...+-+.+.+.|. ++..++++|++.||..|+.+|.=..
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 345555555556666666666666666555455555543 5666666777777766666666433
No 109
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=78.68 E-value=1.2 Score=32.12 Aligned_cols=25 Identities=40% Similarity=0.319 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHhcCCCcHHHHHHHhhhc
Q 001859 663 VRYGAALAVGISCAGTGLSEAISLLEPLT 691 (1003)
Q Consensus 663 VR~gaalALGl~~aGtg~~~aIdlL~~l~ 691 (1003)
||+.++.+||-+ |++.+|+.|..++
T Consensus 1 VR~~Aa~aLg~i----gd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQI----GDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-----SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCHHHHHHHHHHh
Confidence 566666666666 5566666554443
No 110
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=78.24 E-value=29 Score=42.25 Aligned_cols=128 Identities=15% Similarity=0.088 Sum_probs=76.3
Q ss_pred HhcCCChhHHHHHHHHHhhhcCCCCCC--h-----HHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc-H------HHHHH
Q 001859 621 AVSDVSDDVRRTAVLALGFVLYSEPEQ--T-----PRIVSLLSESYNPHVRYGAALAVGISCAGTGL-S------EAISL 686 (1003)
Q Consensus 621 ~vsd~~ddvrr~Avl~LGlI~~g~~e~--v-----~~ll~~L~~s~np~VR~gaalALGl~~aGtg~-~------~aIdl 686 (1003)
|..+.+..|...|+-.|.-++-..+.. + ...+..+....|..+|+-+--.+.-++..+.. . ..++.
T Consensus 127 ~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ 206 (503)
T PF10508_consen 127 CLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDL 206 (503)
T ss_pred HHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHH
Confidence 456777788888888877776443321 2 33345555666788888766666655443321 1 13444
Q ss_pred HhhhcCCChhHHHHHHHHHHHHHhccccccccchH--HHHHHHHHHHHhhhcCChhhHHHHHHHhhhh
Q 001859 687 LEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV--GTFRRQLEKIILDKHEDTMSKMGAILASGIL 752 (1003)
Q Consensus 687 L~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkv--a~~lr~L~~~~~~~~~d~~~rfga~lAqGLl 752 (1003)
|....++.|-.|+.+|+--++-++. ++... ..+ .++.+.|...+.+...|| +++..+--|++
T Consensus 207 ll~eL~~dDiLvqlnalell~~La~-~~~g~-~yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~ 270 (503)
T PF10508_consen 207 LLKELDSDDILVQLNALELLSELAE-TPHGL-QYLEQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRM 270 (503)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHc-ChhHH-HHHHhCCHHHHHHHHHhccccCC--cccchhhhhHH
Confidence 4445567777899999999998887 44332 111 134566777776666777 44444444544
No 111
>PLN03077 Protein ECB2; Provisional
Probab=77.98 E-value=2.2e+02 Score=36.83 Aligned_cols=95 Identities=8% Similarity=0.060 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccH
Q 001859 139 VERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDY 218 (1003)
Q Consensus 139 v~~~~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy 218 (1003)
-+.|+.-|.+.|...+|+.+.-+.++.. +. +| ......++..|...-.-..- .++...+++.=......-|
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g-----~~--Pd-~~t~~~ll~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAG-----VR--PD-VYTFPCVLRTCGGIPDLARG-REVHAHVVRFGFELDVDVV 225 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CC--CC-hhHHHHHHHHhCCccchhhH-HHHHHHHHHcCCCcccchH
Confidence 4456666777777777777664443210 10 11 11122233333222111111 2233333222111123346
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 001859 219 LSICQCLMFLDEPEGVVSILEKLL 242 (1003)
Q Consensus 219 ~~~~~~~i~Lnd~~~v~~il~~L~ 242 (1003)
..++.++.+.++.+.+.++|+.+.
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~ 249 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMP 249 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCC
Confidence 777888888888888888888863
No 112
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=76.05 E-value=55 Score=37.43 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHhcccccccc-chHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhc
Q 001859 695 VDFVRQGALIAMAMVMVQINEAND-SRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 753 (1003)
Q Consensus 695 dd~Vrq~AiiALGlI~~gt~~a~~-pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 753 (1003)
+..|..+|+-|.|+++..-+.... ..+...+..|...+ .+.|..+|..|.-++++|+
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL--~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELL--DSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHH
Confidence 356899999999999965544210 11223344455555 3678888888888877764
No 113
>PLN03218 maturation of RBCL 1; Provisional
Probab=75.62 E-value=3e+02 Score=37.05 Aligned_cols=274 Identities=12% Similarity=-0.017 Sum_probs=151.0
Q ss_pred HHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccC---CchhHHHHHHHH
Q 001859 420 AGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRST---NVEVIQHGACLG 496 (1003)
Q Consensus 420 aSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~---~~~~vr~GA~LG 496 (1003)
.--|+...|+.++++..+..-...+ -.+....=..+.-|+...|..+.|..++.+..... ....+.+.+++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~G-----v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKN-----VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 3446777888888887665432221 11111111222334555667778888887765320 112444444443
Q ss_pred HHHHhcCCCCHHHHHHHHHhhcCCC-hhhHHHHHHHHhhhhcCCCchHHHHHHHHhhhcC-chhHHHHHHHHHhHhccCC
Q 001859 497 LGLAALGTADEDIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQ-HEKIIRGLALGIALTVYGR 574 (1003)
Q Consensus 497 LGla~~Gs~~e~~~e~L~~~L~~Ds-~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~et~-~e~i~r~~algLgLl~~G~ 574 (1003)
|.+..|.- +.+.+.+......+- +.......+.-|+...|.. +++..++..+.... .....-+.++.-++...|+
T Consensus 588 -ay~k~G~l-deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~-deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 588 -ACANAGQV-DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW-DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred -HHHHCCCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333432 355555555543221 1112222333333344432 23446665554432 3334455566667777888
Q ss_pred hhhHHHHHHHHhcCC-ChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc-CCChhHHHHHHHHHhhhcCCCCCChHHHH
Q 001859 575 EEEADTLIEQMTRDQ-DPILRYGGMYALALAYSGTANNKAIRQLLHFAVS-DVSDDVRRTAVLALGFVLYSEPEQTPRIV 652 (1003)
Q Consensus 575 ~e~ad~lie~L~~~~-d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs-d~~ddvrr~Avl~LGlI~~g~~e~v~~ll 652 (1003)
-+.+..+++.+.... .|.... .-++.-+|+..|+.+...++++...+ ...+++.-+-.+.-|+.-.|+.+.+..++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~t--ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVS--YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 899988888887542 222211 22345577888998888888876653 34567777777777888888888888888
Q ss_pred HHHhhc-CCchhhHHHHHHHHHHhcCCCc-HHHHHHHhhhcC---CChhHHHHHHHHHH
Q 001859 653 SLLSES-YNPHVRYGAALAVGISCAGTGL-SEAISLLEPLTS---DVVDFVRQGALIAM 706 (1003)
Q Consensus 653 ~~L~~s-~np~VR~gaalALGl~~aGtg~-~~aIdlL~~l~~---D~dd~Vrq~AiiAL 706 (1003)
+.+... ..|....-..+.-++. ..|+ ..+.+++..+.+ .|+. +-.++++++
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~--k~G~le~A~~l~~~M~k~Gi~pd~-~tynsLIgl 798 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASE--RKDDADVGLDLLSQAKEDGIKPNL-VMCRCITGL 798 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Confidence 877654 3555544444444444 4444 455667777765 3333 345556544
No 114
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.31 E-value=1.5e+02 Score=33.79 Aligned_cols=125 Identities=15% Similarity=0.081 Sum_probs=67.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHH-Hhhhc-CCCCCChHHHHHHHhhcC-CchhhHHHHHHHHHH
Q 001859 598 MYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLA-LGFVL-YSEPEQTPRIVSLLSESY-NPHVRYGAALAVGIS 674 (1003)
Q Consensus 598 ~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~-LGlI~-~g~~e~v~~ll~~L~~s~-np~VR~gaalALGl~ 674 (1003)
.+.++-.|+-+|..+..+.+|...-.+..++-+.. +.+ |.|+- .........+.+.+..+. |+..|+..+..+-
T Consensus 171 ~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~-- 247 (304)
T COG3118 171 KLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLH-- 247 (304)
T ss_pred HHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH--
Confidence 34455566677777777777776443332221111 111 22221 111222334455554444 5545554444443
Q ss_pred hcCCC-cHHHHH-HHhhhcC---CChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001859 675 CAGTG-LSEAIS-LLEPLTS---DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 732 (1003)
Q Consensus 675 ~aGtg-~~~aId-lL~~l~~---D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~ 732 (1003)
..| +..|.+ +|.-+.. +.|+.+|+.=+--+.+++.+.+ .+...||+|.+.+
T Consensus 248 --~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp-----~~~~~RRkL~slL 303 (304)
T COG3118 248 --LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP-----LVLAYRRKLYSLL 303 (304)
T ss_pred --HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhh
Confidence 335 455666 4444433 5678899998888887776554 3778999998764
No 115
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.11 E-value=37 Score=37.74 Aligned_cols=101 Identities=20% Similarity=0.140 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC-------CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcH
Q 001859 609 ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP-------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS 681 (1003)
Q Consensus 609 Gn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~-------e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~ 681 (1003)
=+....++|++++....++.+++.+..++|-...-.. -....++.-++.+.+|.+|--+.-||.-......|.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 3455667777776655666677777777766543221 123345555667788888877777777666666666
Q ss_pred HHHH-----HHhhhcCC-ChhHHHHHHHHHHHHH
Q 001859 682 EAIS-----LLEPLTSD-VVDFVRQGALIAMAMV 709 (1003)
Q Consensus 682 ~aId-----lL~~l~~D-~dd~Vrq~AiiALGlI 709 (1003)
..|+ +++....+ .+.+|+++++=+|.-.
T Consensus 89 ~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 89 EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNL 122 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc
Confidence 6665 33333333 3567777666555543
No 116
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.07 E-value=6.1 Score=48.75 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred CChhHHHHHHHHHhhhcCCCC----CChHHHHHHHhhcCCchhhHHHHHHHHHH--hcCCCcHHHHHHHhhhcCCChhHH
Q 001859 625 VSDDVRRTAVLALGFVLYSEP----EQTPRIVSLLSESYNPHVRYGAALAVGIS--CAGTGLSEAISLLEPLTSDVVDFV 698 (1003)
Q Consensus 625 ~~ddvrr~Avl~LGlI~~g~~----e~v~~ll~~L~~s~np~VR~gaalALGl~--~aGtg~~~aIdlL~~l~~D~dd~V 698 (1003)
.++.++++|.++|--+++=+. +-.|-++..+....+|.+|..+.++||=. |-.+--.+.-+.|-+-.+|.+..|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V 987 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADV 987 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHH
Confidence 356789999999877666554 44566666667789999999999999843 333333444567777779999999
Q ss_pred HHHHHHHHHHH-hccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHh
Q 001859 699 RQGALIAMAMV-MVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILAS 749 (1003)
Q Consensus 699 rq~AiiALGlI-~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAq 749 (1003)
|+.+++.+.+. ++|+- ||++-+-.+++.+. .+|..+.-.+++-.
T Consensus 988 ~rtclmti~fLilagq~-----KVKGqlg~ma~~L~--deda~Isdmar~ff 1032 (1128)
T COG5098 988 RRTCLMTIHFLILAGQL-----KVKGQLGKMALLLT--DEDAEISDMARHFF 1032 (1128)
T ss_pred HHHHHHHHHHHHHccce-----eeccchhhhHhhcc--CCcchHHHHHHHHH
Confidence 99999999875 55542 35555555555553 45555555555443
No 117
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=72.48 E-value=5.8 Score=50.46 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHhhhcCCCCC----ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH----HHhhhcCCChhHH
Q 001859 627 DDVRRTAVLALGFVLYSEPE----QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS----LLEPLTSDVVDFV 698 (1003)
Q Consensus 627 ddvrr~Avl~LGlI~~g~~e----~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId----lL~~l~~D~dd~V 698 (1003)
+.+|..+++.||-+++.... -.|-+++.|..+....+|-...+|+|=+|..- -..+| .+...+.||+.+|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y--Tam~d~YiP~I~~~L~Dp~~iV 1022 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY--TAMTDRYIPMIAASLCDPSVIV 1022 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH--HHHHHHhhHHHHHHhcCchHHH
Confidence 46788899999999888774 45667777777777789999999999998852 22223 6888889999999
Q ss_pred HHHHHHHHHHHhccc
Q 001859 699 RQGALIAMAMVMVQI 713 (1003)
Q Consensus 699 rq~AiiALGlI~~gt 713 (1003)
|+.++|-|+-.+.-.
T Consensus 1023 Rrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1023 RRQTIILLARLLQFG 1037 (1529)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999888766543
No 118
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.12 E-value=19 Score=44.59 Aligned_cols=160 Identities=22% Similarity=0.159 Sum_probs=102.1
Q ss_pred cCCChhHHHHHHHHHhhhcCCC--------CCChHHHHHHHhhcCCchhhHHHHHHHHHHh----cCCCcHHHHHHHhhh
Q 001859 623 SDVSDDVRRTAVLALGFVLYSE--------PEQTPRIVSLLSESYNPHVRYGAALAVGISC----AGTGLSEAISLLEPL 690 (1003)
Q Consensus 623 sd~~ddvrr~Avl~LGlI~~g~--------~e~v~~ll~~L~~s~np~VR~gaalALGl~~----aGtg~~~aIdlL~~l 690 (1003)
....-.+|-++|++||-|+=|- |+-+|-++++ +.+.-|-||...|..|+--. .-.++.--+.+|+.+
T Consensus 403 ~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~-L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSL-LDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHH-hccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 3444568899999999887653 3455555554 46778999999998887531 011222222344443
Q ss_pred c---CCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHh-hhcCChhhHHHHHHHhhhhccCCCceEEEeccC
Q 001859 691 T---SDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIIL-DKHEDTMSKMGAILASGILDAGGRNVTIRLLSK 766 (1003)
Q Consensus 691 ~---~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~-~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~ 766 (1003)
. =|++..|.-+|..|.+..-=.-.....|.+..++++|.+..+ .++++-.+.|-|+=.+. .+-
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlA-------------dsv 548 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLA-------------DSV 548 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHH-------------HHH
Confidence 3 399999999999999977544444456777777777765443 14566666666532111 122
Q ss_pred CCCCchhHHHHHHH--HHHhHh--------HHHHHHHHhh
Q 001859 767 TKHDKITAVVGLSV--FSQFWY--------WYPLIYFISL 796 (1003)
Q Consensus 767 ~~~~~~~a~vGll~--f~q~~y--------w~pl~~~lsl 796 (1003)
...+|..+.+-++| ..+-|- -|||+-|+|.
T Consensus 549 g~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSs 588 (885)
T KOG2023|consen 549 GHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSS 588 (885)
T ss_pred HHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHH
Confidence 23577888888886 456664 6899888864
No 119
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=71.96 E-value=1.5e+02 Score=31.91 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=79.9
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhH-HHHHHHHHhhhcCCCCCChHHHHHH
Q 001859 576 EEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-RRTAVLALGFVLYSEPEQTPRIVSL 654 (1003)
Q Consensus 576 e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddv-rr~Avl~LGlI~~g~~e~v~~ll~~ 654 (1003)
+....+++.|-..+---.|+.++..+. .+....+...+..+...+..-.+=|+ =..+.-.+|-+....+ .....+..
T Consensus 45 ~~~~~l~~~Lw~~~~~E~r~~al~~l~-~~~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~-~~~~~l~~ 122 (208)
T cd07064 45 EELWELVLELWQQPEREYQYVAIDLLR-KYKKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYP-EFEPVMDE 122 (208)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCCh-hHHHHHHH
Confidence 344555556665544455666654333 23344555565655555433222222 2333333344333433 34667888
Q ss_pred HhhcCCchhhHHHHHHHHHHhcCCCcHHHH-HHHhhhcCCChhHHHHHHHHHHHHHhcc
Q 001859 655 LSESYNPHVRYGAALAVGISCAGTGLSEAI-SLLEPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 655 L~~s~np~VR~gaalALGl~~aGtg~~~aI-dlL~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
...+.|..+|+.++++. +.+.-.++.+-+ .++..+++|+++||+.+.-=+|--++-.
T Consensus 123 W~~s~~~W~rR~ai~~~-l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 123 WSTDENFWLRRTAILHQ-LKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHcCCcHHHHHHHHHHH-HHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 89999999999998864 334444565544 4788889999999999866666666553
No 120
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=70.90 E-value=1.2e+02 Score=37.59 Aligned_cols=191 Identities=17% Similarity=0.186 Sum_probs=111.4
Q ss_pred HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCC------CCHHHHHHHHHhhcCCCh-hhHHHHHHHHhhhhcCCCchH
Q 001859 471 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGT------ADEDIYDDIKNVLYTDSA-VAGEAAGISMGLLMVGTASEK 543 (1003)
Q Consensus 471 ~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs------~~e~~~e~L~~~L~~Ds~-~~~e~AalALGLI~~Gs~n~~ 543 (1003)
++++..|.-+|.++ ....|..|+--|.-+.|-. +|.++-. ++ +|.. ....-|.-. .+-||+++
T Consensus 302 ~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~vcN~evEs----LI-sd~Nr~IstyAITt----LLKTGt~e 371 (898)
T COG5240 302 DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSVCNKEVES----LI-SDENRTISTYAITT----LLKTGTEE 371 (898)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeeecChhHHH----Hh-hcccccchHHHHHH----HHHcCchh
Confidence 67888888888874 4788888888887776653 3434322 22 2322 222223333 23566666
Q ss_pred HH-HHHH----HhhhcC-chhHH-HHHHHHHhHhccCC---------------------hhhHHHHHHHHhcCCChhhHH
Q 001859 544 AG-EMLT----YAHETQ-HEKII-RGLALGIALTVYGR---------------------EEEADTLIEQMTRDQDPILRY 595 (1003)
Q Consensus 544 a~-~LL~----~~~et~-~e~i~-r~~algLgLl~~G~---------------------~e~ad~lie~L~~~~d~i~R~ 595 (1003)
-+ .|+. +++|-. +-+++ --+.-+|.+.|..+ .-.+|++.+.+..+++. |.
T Consensus 372 ~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kE 449 (898)
T COG5240 372 TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KE 449 (898)
T ss_pred hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HH
Confidence 55 4443 344422 22222 22222333333332 34567777777765443 33
Q ss_pred HHHHHHHHhhcCCCC-HHHHHHHHHHHhcCC--------------------ChhHHHHHHHHHhhhcCCCC-----CChH
Q 001859 596 GGMYALALAYSGTAN-NKAIRQLLHFAVSDV--------------------SDDVRRTAVLALGFVLYSEP-----EQTP 649 (1003)
Q Consensus 596 ~a~~alglAyaGTGn-~~aI~~LL~~~vsd~--------------------~ddvrr~Avl~LGlI~~g~~-----e~v~ 649 (1003)
- ++..=|-|+.-+. +++.=++|+++.... +.-||.+||.+|..-++.-. +.+.
T Consensus 450 r-aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~ 528 (898)
T COG5240 450 R-ALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVE 528 (898)
T ss_pred H-HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHH
Confidence 2 3344466766655 355557888876532 34679999999977666532 4555
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHH
Q 001859 650 RIVSLLSESYNPHVRYGAALAVGIS 674 (1003)
Q Consensus 650 ~ll~~L~~s~np~VR~gaalALGl~ 674 (1003)
.++..-+++.|..||--++++|--+
T Consensus 529 ~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 529 NALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhh
Confidence 6666667888999999999988654
No 121
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=70.61 E-value=25 Score=44.90 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhh--cCCCC---CChHHHHHHHhhcCCchhhHHHHHHHHHHhc----CCCcHH
Q 001859 612 KAIRQLLHFAVSDVSDDVRRTAVLALGFV--LYSEP---EQTPRIVSLLSESYNPHVRYGAALAVGISCA----GTGLSE 682 (1003)
Q Consensus 612 ~aI~~LL~~~vsd~~ddvrr~Avl~LGlI--~~g~~---e~v~~ll~~L~~s~np~VR~gaalALGl~~a----Gtg~~~ 682 (1003)
..|.++|.....+ +--+|+..+.+|.++ .+|++ +....++..|..+..|.||.+++-.|-.+-. ..-+..
T Consensus 557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~ 635 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE 635 (759)
T ss_pred HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH
Confidence 4555666554322 345677766666554 24555 4455566778899999999999987755422 223444
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHHhcc
Q 001859 683 AISLLEPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 683 aIdlL~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
+..+|+.+.+|++-+||..|+.|.|.|..-
T Consensus 636 v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 636 VLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 555899999999999999999999998653
No 122
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.30 E-value=12 Score=48.83 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHhhhcCCCC----CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc-HHHH-HHHhhhcCCChhHHH
Q 001859 626 SDDVRRTAVLALGFVLYSEP----EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL-SEAI-SLLEPLTSDVVDFVR 699 (1003)
Q Consensus 626 ~ddvrr~Avl~LGlI~~g~~----e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~-~~aI-dlL~~l~~D~dd~Vr 699 (1003)
+++++++|.++||-.++=+- +..+-++..|..+.+|.||..+.+|+|=.-..-+| .+-. +.|-..++|++..||
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vR 1015 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVR 1015 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHH
Confidence 56899999999998887665 45566667777799999999999999854333222 1111 357777899999999
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001859 700 QGALIAMAMVMVQINEANDSRVGTFRRQLEKII 732 (1003)
Q Consensus 700 q~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~ 732 (1003)
.+|++-|.......= -||++-+--++..+
T Consensus 1016 kta~lvlshLILndm----iKVKGql~eMA~cl 1044 (1251)
T KOG0414|consen 1016 KTALLVLSHLILNDM----IKVKGQLSEMALCL 1044 (1251)
T ss_pred HHHHHHHHHHHHhhh----hHhcccHHHHHHHh
Confidence 999999987655221 13444445555555
No 123
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.26 E-value=3.1e+02 Score=34.96 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=46.7
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHH-HHhhhh
Q 001859 685 SLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAI-LASGIL 752 (1003)
Q Consensus 685 dlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~-lAqGLl 752 (1003)
+-|+.+..|+|...+.-+++||+.|+-..+.+ |....+..-+.+. ++|+.+|..|. +-.|++
T Consensus 302 qKLr~fiedsDqNLKYlgLlam~KI~ktHp~~----Vqa~kdlIlrcL~--DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 302 QKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA----VQAHKDLILRCLD--DKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH----HHHhHHHHHHHhc--cCCchhHHHHHHHHHHHh
Confidence 35888889999999999999999999866655 6666666677775 47777776553 555554
No 124
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=69.91 E-value=6.4 Score=29.09 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=15.4
Q ss_pred HHhhcCCchhhHHHHHHHHHHh
Q 001859 654 LLSESYNPHVRYGAALAVGISC 675 (1003)
Q Consensus 654 ~L~~s~np~VR~gaalALGl~~ 675 (1003)
.++++.+|.||.+++.+||-++
T Consensus 7 ~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 7 QLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHH
Confidence 4556778888888888887653
No 125
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=69.86 E-value=26 Score=44.70 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhhhc--CCCC----CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH----HHhhhcCCChh
Q 001859 627 DDVRRTAVLALGFVL--YSEP----EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS----LLEPLTSDVVD 696 (1003)
Q Consensus 627 ddvrr~Avl~LGlI~--~g~~----e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId----lL~~l~~D~dd 696 (1003)
..+|++|+-.+-.+. +|.. +-+++++....+. |--+|.....++..+----|+.-..+ .+..+++|++.
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~va 610 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVA 610 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCch
Confidence 456766655443332 3322 3455555444433 46789998888875533334444433 56678899999
Q ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhcc
Q 001859 697 FVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDA 754 (1003)
Q Consensus 697 ~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~a 754 (1003)
.||-+++..|-.|+..-.. +.....++++...++ +++|.++||.+..|+|.+..
T Consensus 611 nVR~nvak~L~~i~~~L~~---~~~~~~v~pll~~L~-~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKLLDE---SVRDEEVLPLLETLS-SDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hhhhhHHHHHHHHHhhcch---HHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHHHH
Confidence 9999999999998876433 234444444444444 47899999999999999754
No 126
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.82 E-value=1.7e+02 Score=36.33 Aligned_cols=153 Identities=22% Similarity=0.195 Sum_probs=90.8
Q ss_pred HhhhcC-chhHHHHHHHH-HhHh--ccCC--hhhHHHHHHHHhc---CCChhhHHHHHHHHHHhhcCCCCH--HHHHHHH
Q 001859 550 YAHETQ-HEKIIRGLALG-IALT--VYGR--EEEADTLIEQMTR---DQDPILRYGGMYALALAYSGTANN--KAIRQLL 618 (1003)
Q Consensus 550 ~~~et~-~e~i~r~~alg-LgLl--~~G~--~e~ad~lie~L~~---~~d~i~R~~a~~alglAyaGTGn~--~aI~~LL 618 (1003)
.++.++ .++-+|+.++- |+++ .+|- +..++.+++.|.. +.++.+|.-++.++.-----+||+ ..+.-|+
T Consensus 96 ~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~ 175 (885)
T COG5218 96 LLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLK 175 (885)
T ss_pred HHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 344444 45555555543 5555 3442 4556777776653 578999999998876444456774 5566667
Q ss_pred HHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHH-HHHHHHH---hcCCCcHHHHHHHhhhcCCC
Q 001859 619 HFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGA-ALAVGIS---CAGTGLSEAISLLEPLTSDV 694 (1003)
Q Consensus 619 ~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~ga-alALGl~---~aGtg~~~aIdlL~~l~~D~ 694 (1003)
.....|.+++|||.|.+.|. -++..-|-+++.- .+-+-..|+.+ .=+|--+ |.-+- ..-|-+++.-..|.
T Consensus 176 ~~vqnDPS~EVRr~allni~----vdnsT~p~IlERa-rDv~~anRr~vY~r~Lp~iGd~~~lsi-~kri~l~ewgl~dR 249 (885)
T COG5218 176 DIVQNDPSDEVRRLALLNIS----VDNSTYPCILERA-RDVSGANRRMVYERCLPRIGDLKSLSI-DKRILLMEWGLLDR 249 (885)
T ss_pred HHHhcCcHHHHHHHHHHHee----eCCCcchhHHHHh-hhhhHHHHHHHHHHHhhhhcchhhccc-cceehhhhhcchhh
Confidence 77778999999999988774 3445556666543 23333444432 1222211 11111 12223677777888
Q ss_pred hhHHHHHHHHHHHH
Q 001859 695 VDFVRQGALIAMAM 708 (1003)
Q Consensus 695 dd~Vrq~AiiALGl 708 (1003)
+-.|+.+++=+++-
T Consensus 250 e~sv~~a~~d~ia~ 263 (885)
T COG5218 250 EFSVKGALVDAIAS 263 (885)
T ss_pred hhhHHHHHHHHHHH
Confidence 88888887765554
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=68.69 E-value=1.6e+02 Score=31.11 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=52.0
Q ss_pred CCCchhhHHHHHhhhh--ccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCC-hhhHH
Q 001859 451 SPYSEGGALYALGLIH--ANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDS-AVAGE 526 (1003)
Q Consensus 451 ~~y~k~GAl~ALGLI~--~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds-~~~~e 526 (1003)
.+.....+.+.+|..+ .|..+.|+..+.+.+....+.....-+.+.+|.++...++- .+.+.+...+..+. .....
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3445566677777644 44556788888877764322333445667778887776654 67777777764321 11112
Q ss_pred HHHHHHhhhhcC
Q 001859 527 AAGISMGLLMVG 538 (1003)
Q Consensus 527 ~AalALGLI~~G 538 (1003)
-+.+.+|.++..
T Consensus 108 ~a~~~~g~~~~~ 119 (235)
T TIGR03302 108 YAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHHHHHHH
Confidence 255666777654
No 128
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=68.48 E-value=2.4e+02 Score=33.04 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001859 628 DVRRTAVLALGFVLYSEPEQTPRIVSLLSE 657 (1003)
Q Consensus 628 dvrr~Avl~LGlI~~g~~e~v~~ll~~L~~ 657 (1003)
+..-....+-+++..|+.+.+.++++....
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334445555556666666555555554444
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=67.51 E-value=87 Score=31.05 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=56.7
Q ss_pred cCChhhHHHHHHHHhcC-CChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCC-ChhHHHHHHHHHhhhcCCCCCChH
Q 001859 572 YGREEEADTLIEQMTRD-QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV-SDDVRRTAVLALGFVLYSEPEQTP 649 (1003)
Q Consensus 572 ~G~~e~ad~lie~L~~~-~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~-~ddvrr~Avl~LGlI~~g~~e~v~ 649 (1003)
-|+...+...++.|... ++......+.+.++-.+...|+.+.....|.-+.+.. ++.++..+-+.|+.|.+... ...
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~-~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG-QYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHH
Confidence 34555555555544443 2222334455666777777777766666666555543 45566667777776665332 222
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhcCCCc
Q 001859 650 RIVSLLSESYNPHVRYGAALAVGISCAGTGL 680 (1003)
Q Consensus 650 ~ll~~L~~s~np~VR~gaalALGl~~aGtg~ 680 (1003)
.-+..|....++..+--+...+|-++...|+
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCC
Confidence 3333333333444444455556666655553
No 130
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=67.03 E-value=1.7e+02 Score=33.12 Aligned_cols=146 Identities=18% Similarity=0.283 Sum_probs=83.2
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhH-------HHH--HHHHHhhhcCC
Q 001859 573 GREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-------RRT--AVLALGFVLYS 643 (1003)
Q Consensus 573 G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddv-------rr~--Avl~LGlI~~g 643 (1003)
-|++-.-++-+.+...+||++|.+--++. -| -+.+.|+.+|+.=.+...+.. +.. .+=++|.|
T Consensus 93 aRk~GlLaLE~~~~~~~d~Fl~~gl~lvv----DG-~~~~~i~~iLe~ei~~~~~r~~~~~~v~~~~g~~APafGmi--- 164 (271)
T PRK06926 93 ARREGLLSLEAELEEVKDPFIKKGLLLAI----DG-WEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYAPAWGMI--- 164 (271)
T ss_pred HHhcCHHHHHhhhcCCCChHHHHHHHHHH----CC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHchHHHHH---
Confidence 34444445555566677899888754432 25 677888988886444322222 111 12344444
Q ss_pred CCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhh----cCCChhHHHHHHHHHHHHHhccccccccc
Q 001859 644 EPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPL----TSDVVDFVRQGALIAMAMVMVQINEANDS 719 (1003)
Q Consensus 644 ~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l----~~D~dd~Vrq~AiiALGlI~~gt~~a~~p 719 (1003)
.++.-++..|....|| -..|..+|.+++..=-|-.-+-=++.|+ -.-.+..++.--++--|+++++..+ +|
T Consensus 165 --GTviGLI~mL~~L~dp-~~IG~~mAvAlvtTlYGv~~Anlif~PiA~kL~~~~~~e~~~~~~i~eGilai~~G~--nP 239 (271)
T PRK06926 165 --GTLVGLVLMLKNLNDP-STLGPNMAIALLTTLYGTLLANLVFLPIAAKLEEKTEEEVFVKQVIIEGVIGVQSGQ--NP 239 (271)
T ss_pred --HHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CH
Confidence 2356666667777776 4566666666652211322222233343 3344556666666777777777654 57
Q ss_pred hHHHHHHHHHHHHh
Q 001859 720 RVGTFRRQLEKIIL 733 (1003)
Q Consensus 720 kva~~lr~L~~~~~ 733 (1003)
++ +.+.|..|+.
T Consensus 240 ~~--ieekL~~~l~ 251 (271)
T PRK06926 240 RI--LEEKLSVFSS 251 (271)
T ss_pred HH--HHHHHHHhCC
Confidence 76 6777888874
No 131
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=65.31 E-value=88 Score=35.29 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHh---hcCCchhhHHHHHHHH---HH----hcC------
Q 001859 614 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS---ESYNPHVRYGAALAVG---IS----CAG------ 677 (1003)
Q Consensus 614 I~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~---~s~np~VR~gaalALG---l~----~aG------ 677 (1003)
++.|+.-++...+.++|+.++.+||+.++=+.+.+...+.++. +..++.||..+.-++. +. ...
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 3445545556667788888888888888777755544333332 4456667766554432 11 111
Q ss_pred --CCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccc
Q 001859 678 --TGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQI 713 (1003)
Q Consensus 678 --tg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt 713 (1003)
.+....+++|.....+.++.+|..|+.|++.++...
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 123566677777777778889999999999887644
No 132
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=65.05 E-value=1.7e+02 Score=30.23 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=11.9
Q ss_pred HHHHHHhcCCChhhHHHHHHHH
Q 001859 580 TLIEQMTRDQDPILRYGGMYAL 601 (1003)
Q Consensus 580 ~lie~L~~~~d~i~R~~a~~al 601 (1003)
.++.....+++++.|+.++.++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~ 129 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLL 129 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 4455555556666666555443
No 133
>PRK08124 flagellar motor protein MotA; Validated
Probab=64.68 E-value=2.4e+02 Score=31.60 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=79.1
Q ss_pred hHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhH-------HHHH--HHHHh
Q 001859 568 ALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDV-------RRTA--VLALG 638 (1003)
Q Consensus 568 gLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddv-------rr~A--vl~LG 638 (1003)
.+...+|.+.+-++-+......+++++.+--+. --|+ +.+.++.+++.-.....+.. ...+ +=++|
T Consensus 84 ~l~~~~r~~g~laLe~~~~~~~~~fl~~gl~~~----v~g~-~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~AP~lG 158 (263)
T PRK08124 84 EWASESRREGLLALEAQLDEIDDPFLKRGLKMV----IDGQ-SPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLG 158 (263)
T ss_pred HHHHHhchhhHHHHHHhhcCchhHHHHHHHHHH----hcCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence 333444555444444444444556655543221 1255 66777777776543222211 1112 23356
Q ss_pred hhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcC----CChhHHHHHHHHHHHHHhcccc
Q 001859 639 FVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS----DVVDFVRQGALIAMAMVMVQIN 714 (1003)
Q Consensus 639 lI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~----D~dd~Vrq~AiiALGlI~~gt~ 714 (1003)
++. .+.-++..+....+|.. -|..+|.++...-.|-.-|.=...|+.. -.+..+..--++--|+++++..
T Consensus 159 llG-----TVlGlI~~f~~l~~p~~-lg~gIa~ALitT~yGl~vA~~~~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~G 232 (263)
T PRK08124 159 VLG-----AVIGLIAALGNLSDIEK-LGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQEG 232 (263)
T ss_pred HHH-----HHHHHHHHHHhccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 552 35666666666566633 4555555555444454444434444432 3445555556666777777665
Q ss_pred ccccchHHHHHHHHHHHHh
Q 001859 715 EANDSRVGTFRRQLEKIIL 733 (1003)
Q Consensus 715 ~a~~pkva~~lr~L~~~~~ 733 (1003)
+ +|++ +.+.|++++.
T Consensus 233 ~--~P~~--~~e~l~~~l~ 247 (263)
T PRK08124 233 N--APRV--IEEKLLGYLS 247 (263)
T ss_pred C--CHHH--HHHHHHHhCC
Confidence 3 5777 5677888874
No 134
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=64.46 E-value=5.6 Score=28.71 Aligned_cols=25 Identities=40% Similarity=0.712 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001859 629 VRRTAVLALGFVLYSEPEQTPRIVSLL 655 (1003)
Q Consensus 629 vrr~Avl~LGlI~~g~~e~v~~ll~~L 655 (1003)
||+.|+.+||-+ |+++.++.+++.|
T Consensus 1 VR~~Aa~aLg~i--gd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQI--GDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG---SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCHHHHHHHHHHh
Confidence 577888888866 7777777777665
No 135
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.74 E-value=1e+02 Score=38.98 Aligned_cols=91 Identities=22% Similarity=0.166 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHHhhhcCCCC-C-ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc----HHHHHHHhhhcCCChhH
Q 001859 624 DVSDDVRRTAVLALGFVLYSEP-E-QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL----SEAISLLEPLTSDVVDF 697 (1003)
Q Consensus 624 d~~ddvrr~Avl~LGlI~~g~~-e-~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~----~~aIdlL~~l~~D~dd~ 697 (1003)
|.++.+|..|+-.+|.|-+++- + .+..+.+ ...+.+|+||..+++.++..+-=.+. ...++.|..+..|+++.
T Consensus 97 d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~-~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~ 175 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRVDKITEYLCDPLLK-CLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPM 175 (734)
T ss_pred CCCHHHHHHHhhceeeEeehHHHHHHHHHHHH-hccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCch
Confidence 4566677777777776644331 1 1222222 33677788888887777776554432 23345677777788888
Q ss_pred HHHHHHHHHHHHhccccc
Q 001859 698 VRQGALIAMAMVMVQINE 715 (1003)
Q Consensus 698 Vrq~AiiALGlI~~gt~~ 715 (1003)
|-.+|+=||.-|.-.+++
T Consensus 176 VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 176 VVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 888888777777766654
No 136
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=61.26 E-value=51 Score=36.26 Aligned_cols=47 Identities=17% Similarity=0.057 Sum_probs=14.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCCh
Q 001859 602 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQT 648 (1003)
Q Consensus 602 glAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v 648 (1003)
|.+|...|+.+..-..+..+.....+|......++=.+...|..+.+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred HHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 33444444443333333333333333333333444444444444333
No 137
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=60.15 E-value=2e+02 Score=30.35 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCC-hhhHHHHHHHHhhhhcCCCchHHH-HHHH
Q 001859 488 VIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDS-AVAGEAAGISMGLLMVGTASEKAG-EMLT 549 (1003)
Q Consensus 488 ~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds-~~~~e~AalALGLI~~Gs~n~~a~-~LL~ 549 (1003)
.....+.+.+|..+...++- .+...+..++.... .....-+-+.+|.++...++.+.. ..+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~ 94 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAAD 94 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444556666666555543 56666666553221 112223556777777777665544 4444
No 138
>PRK09109 motC flagellar motor protein; Reviewed
Probab=59.04 E-value=1.7e+02 Score=32.42 Aligned_cols=150 Identities=17% Similarity=0.260 Sum_probs=78.5
Q ss_pred hHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHH---------HHHHHHHh
Q 001859 568 ALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVR---------RTAVLALG 638 (1003)
Q Consensus 568 gLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvr---------r~Avl~LG 638 (1003)
.+...+|.+...++-+.....++|+.|.+--+ ..-|. +.+.++.+++.-.+...+..+ ...+=++|
T Consensus 83 ~l~~~~r~~gll~le~~~~~~~~~fl~~gl~l----~~~g~-~~~~i~~~le~~i~~~~~r~~~~~~~l~~~a~~AP~lG 157 (246)
T PRK09109 83 EWSNTARKEGLLGLEDVADREPDPFARKGLQL----LVDGA-EPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIG 157 (246)
T ss_pred HHHHHHHHhhHHHHHhhccCCCCHHHHHHHHH----hhcCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHHH
Confidence 33344555656566666666678888755322 22355 778888888764432222211 11233455
Q ss_pred hhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHH----HHHhhhcCCChhHHHHHHHHHHHHHhcccc
Q 001859 639 FVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAI----SLLEPLTSDVVDFVRQGALIAMAMVMVQIN 714 (1003)
Q Consensus 639 lI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aI----dlL~~l~~D~dd~Vrq~AiiALGlI~~gt~ 714 (1003)
++ | .+.-+++.+..-.||.. -|..++.++...-.|-.-|. -+-.++-.-.+.+.+..-++--|+++++..
T Consensus 158 ll--G---TVlGlI~~f~~l~~p~~-lg~gIa~ALvtT~~Gl~vA~~~~~Pia~kl~~~~~~e~~~~~~i~egil~i~~g 231 (246)
T PRK09109 158 II--G---AVMGLIHVMENLADPSQ-LGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEG 231 (246)
T ss_pred HH--H---HHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55 2 35666666666667643 44444444442222322221 233333334455566666666777777765
Q ss_pred ccccchHHHHHHHHHHHH
Q 001859 715 EANDSRVGTFRRQLEKII 732 (1003)
Q Consensus 715 ~a~~pkva~~lr~L~~~~ 732 (1003)
+ +|++ +.+.|..|+
T Consensus 232 ~--~P~~--~~~~L~~~l 245 (246)
T PRK09109 232 E--NPRS--IELKLQGYL 245 (246)
T ss_pred C--CHHH--HHHHHHHHh
Confidence 4 5776 456676654
No 139
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.33 E-value=3.2e+02 Score=35.51 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=41.2
Q ss_pred CCCchhhHHHHHhhhhccc-------hHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 001859 451 SPYSEGGALYALGLIHANH-------GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNV 516 (1003)
Q Consensus 451 ~~y~k~GAl~ALGLI~~g~-------~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~ 516 (1003)
...+||+++.-|--.--.. ++.+++...++|++ .+.+|-..|+-|+-..+ -.-+++++..|.+.
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lc-evy~e~il~dL~e~ 810 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLC-EVYPEDILPDLSEE 810 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHH-HhcchhhHHHHHHH
Confidence 4567888776554322211 13477888888887 56788888887775542 33467888888873
No 140
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=58.29 E-value=80 Score=39.04 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHH---HhhcCCchhhHHHHHHHHHHhcCCCcHHHHH
Q 001859 609 ANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL---LSESYNPHVRYGAALAVGISCAGTGLSEAIS 685 (1003)
Q Consensus 609 Gn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~---L~~s~np~VR~gaalALGl~~aGtg~~~aId 685 (1003)
--..||..++.+| +|.+..||..|+=+|-.++-.+++-+.++.+. |+++.++..+-.+--+|--+.--.+....-.
T Consensus 56 l~~~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~ 134 (556)
T PF05918_consen 56 LQEEAINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTG 134 (556)
T ss_dssp GHHHHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3467888899986 67788899999999999988888888877766 5677888777777777755433222222222
Q ss_pred HHhhhc--CCChhHHHHHHHHHH
Q 001859 686 LLEPLT--SDVVDFVRQGALIAM 706 (1003)
Q Consensus 686 lL~~l~--~D~dd~Vrq~AiiAL 706 (1003)
++..+. +..++.||.-++--|
T Consensus 135 lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHH---HS-HHHHHHHHHHH
T ss_pred HHHHHHhcccCchHHHHHHHHHH
Confidence 444443 234566787766333
No 141
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.43 E-value=4.5e+02 Score=33.59 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=26.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHH--hhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHH
Q 001859 616 QLLHFAVSDVSDDVRRTAVLAL--GFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAV 671 (1003)
Q Consensus 616 ~LL~~~vsd~~ddvrr~Avl~L--GlI~~g~~e~v~~ll~~L~~s~np~VR~gaalAL 671 (1003)
.||+-.++|-+++|+.+++=.| |++-+.+ ..++.+++.|--+.+..|+.-+.-||
T Consensus 233 ~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d-gni~ElL~~ldvsnss~vavk~leal 289 (892)
T KOG2025|consen 233 LLLEWGLNDREFSVKGALVDAILSGWLRFSD-GNILELLERLDVSNSSEVAVKALEAL 289 (892)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc-ccHHHHHHHhccccchHHHHHHHHHH
Confidence 3555556666666666665433 3343322 23444455444444444554444443
No 142
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.23 E-value=58 Score=43.00 Aligned_cols=86 Identities=23% Similarity=0.218 Sum_probs=63.3
Q ss_pred CChhhHHHHHHHHHHhhcCCCC--HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHH---hhcCCchh
Q 001859 589 QDPILRYGGMYALALAYSGTAN--NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLL---SESYNPHV 663 (1003)
Q Consensus 589 ~d~i~R~~a~~alglAyaGTGn--~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L---~~s~np~V 663 (1003)
.||-++.+|.+++|=-.+=+.+ ....+-|..+.....++-||..+|+|+|=.+++-|.-+...-++| +++.++.|
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~v 1014 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSV 1014 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHH
Confidence 4678888888777754444433 245555666655577888999999999999999887666655555 37889999
Q ss_pred hHHHHHHHHHH
Q 001859 664 RYGAALAVGIS 674 (1003)
Q Consensus 664 R~gaalALGl~ 674 (1003)
|..+.+.|.-.
T Consensus 1015 Rkta~lvlshL 1025 (1251)
T KOG0414|consen 1015 RKTALLVLSHL 1025 (1251)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 143
>PRK08456 flagellar motor protein MotA; Validated
Probab=56.59 E-value=3.2e+02 Score=30.46 Aligned_cols=158 Identities=15% Similarity=0.248 Sum_probs=86.5
Q ss_pred HHHHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChh-------HH--H
Q 001859 561 RGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD-------VR--R 631 (1003)
Q Consensus 561 r~~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~dd-------vr--r 631 (1003)
.....-..+...+|.+.+-++.+......+++++.+-- +.--|+ +.+.++..|+.-....... .+ .
T Consensus 76 ~li~~l~~l~~~~r~~g~laLe~~~~~~~~~fl~~gL~----~~~~g~-~~~~i~~~le~ei~~~~~~~~~~~~~~~~~a 150 (257)
T PRK08456 76 ERIKQLVELATLARKDGVLALEGRVAQIEDEFLKNGLS----MLVDGK-DLEEIKESMEIQIEEMEEYYHGAAHYWITAG 150 (257)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhcccCcHHHHHHHHHH----HhhcCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 33334445555667776666666555555666665421 111255 6788888887643311111 01 1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcC----CChhHHHHHHHHHHH
Q 001859 632 TAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS----DVVDFVRQGALIAMA 707 (1003)
Q Consensus 632 ~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~----D~dd~Vrq~AiiALG 707 (1003)
..+=++|++ -.+.-+++.+....||.. -|..++.++...-.|-.-|.-+..|+.+ -.+..+...-++-=|
T Consensus 151 ~~AP~lGll-----GTVlGlI~~~~~l~dp~~-lg~gIa~ALvtT~yGl~vAn~~~~Pia~kl~~~~~~e~~~~~~i~eg 224 (257)
T PRK08456 151 ETCPTMGLV-----GAVMGLMLALQKLDNPAE-MAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEG 224 (257)
T ss_pred HHhhHHHHH-----HHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345555 246677777777778765 6666666665444444444334445443 334445455555566
Q ss_pred HHhccccccccchHHHHHHHHHHHHh
Q 001859 708 MVMVQINEANDSRVGTFRRQLEKIIL 733 (1003)
Q Consensus 708 lI~~gt~~a~~pkva~~lr~L~~~~~ 733 (1003)
+++++..+ +|++ +.+.|..|+.
T Consensus 225 i~~i~~g~--~P~~--i~~~L~~~l~ 246 (257)
T PRK08456 225 ILGIAEGA--NPRD--LEEKLLNYLS 246 (257)
T ss_pred HHHHhCCC--CHHH--HHHHHHHhCC
Confidence 66666553 5776 6777888874
No 144
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=56.35 E-value=99 Score=37.23 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=56.4
Q ss_pred hHHHHHHHhhcCCch--hhHHHHHHHHHHhcCCCcH-HHHHHHhhhcCC----------ChhHHHHHHHHHHHHHhcccc
Q 001859 648 TPRIVSLLSESYNPH--VRYGAALAVGISCAGTGLS-EAISLLEPLTSD----------VVDFVRQGALIAMAMVMVQIN 714 (1003)
Q Consensus 648 v~~ll~~L~~s~np~--VR~gaalALGl~~aGtg~~-~aIdlL~~l~~D----------~dd~Vrq~AiiALGlI~~gt~ 714 (1003)
..+...++.+.-.|+ +|...=.|++.. +|.|-. .+..++..+... ++--+..+|+..+++.....+
T Consensus 182 ~~~~~kL~~E~~aPfR~~R~f~y~a~~as-a~ig~~i~~~rl~~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~ 260 (453)
T PLN03098 182 FRRDLKLISEVQAPFRGVRKFFYVAFTAA-AGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWEN 260 (453)
T ss_pred hhhHHHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCccHhHhhcccchHHHHHHHHHHHHHHHh
Confidence 456677777888886 565544444332 221211 111222233322 122356678888888877666
Q ss_pred ccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHH
Q 001859 715 EANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSV 780 (1003)
Q Consensus 715 ~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~a~vGll~ 780 (1003)
..++-++ .++- -++...+..+.+. .+. ++++..-+|+.++.-++|=.-
T Consensus 261 k~~e~q~-------~ri~---Ree~L~rL~v~l~-------~~~-~v~l~~LRg~~RvvIvAG~~e 308 (453)
T PLN03098 261 KKEEEQM-------SQIT---RDETLSRLPVRLS-------TNR-IVELVQLRDITRPVILAGTKE 308 (453)
T ss_pred cccHHHH-------HHHH---hhhhhccceEecc-------CCC-EEeHHHhcCcceEEEEECCHH
Confidence 6553333 3332 2334444444332 222 455555677777665555543
No 145
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=56.21 E-value=1.2e+02 Score=39.18 Aligned_cols=111 Identities=21% Similarity=0.284 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHhcCchhhHHHHHHhc----------cchHHHHHHHhccCChhhHHHHHHHhcccCCCChH-----
Q 001859 133 PRLEAIVERMLDKCITDGKYQQAMGIAIEC----------RRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRRE----- 197 (1003)
Q Consensus 133 ~~L~~iv~~~~~~~~~~~~~~~AigialE~----------~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~----- 197 (1003)
.+.++++.+++.++..+|+..-|+-++-.. .-++++.+.+-..+.+.+.+-++...|..-.++.+
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 688999999999999999886666544332 23455555444335566777777777762222211
Q ss_pred --HHHHHHHHHHHHHhcCC-CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001859 198 --YRREVLRLLVKVYQKLP-SPDYLSICQCLMFLDEPEGVVSILEKLLR 243 (1003)
Q Consensus 198 --fr~~vL~~l~~iy~~~~-~~dy~~~~~~~i~Lnd~~~v~~il~~L~~ 243 (1003)
+|+.-...+..+=.... .-+.+.++-|+++|++.+...-++..|+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH
Confidence 11111111111100000 01225789999999999999999999874
No 146
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.00 E-value=2.2e+02 Score=36.28 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=82.3
Q ss_pred HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhc---CCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 001859 546 EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR---DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAV 622 (1003)
Q Consensus 546 ~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~---~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~v 622 (1003)
+++. ...|.+-+..|.+=+=|.--..+.++.+-..+..+.. +++|.+|..|+=++||.-.+.=-..+++.|+ .|.
T Consensus 53 dvvk-~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~-~~l 130 (734)
T KOG1061|consen 53 DVVK-CMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLL-KCL 130 (734)
T ss_pred HHHh-hcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHH-Hhc
Confidence 5555 3345566666665555554445577777666666654 4688999888776665422222122333333 345
Q ss_pred cCCChhHHHHHHHHHhhhcCCCCCC-----hHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCc
Q 001859 623 SDVSDDVRRTAVLALGFVLYSEPEQ-----TPRIVSLLSESYNPHVRYGAALAVGISCAGTGL 680 (1003)
Q Consensus 623 sd~~ddvrr~Avl~LGlI~~g~~e~-----v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~ 680 (1003)
.|.+.-+|+.|+++++...-.++++ ....+.-|..+.||.|=..+.-||..+...+++
T Consensus 131 ~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 131 KDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred cCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 6778889999999999887776643 233344444588887776666666666555544
No 147
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.26 E-value=5.1e+02 Score=33.39 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=22.2
Q ss_pred hHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC--HHHHHHHHHhh
Q 001859 472 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD--EDIYDDIKNVL 517 (1003)
Q Consensus 472 ~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~--e~~~e~L~~~L 517 (1003)
+-+..+...|+. -+.|||.-|+++++-||-.... +++-+++...|
T Consensus 134 pl~p~IracleH-rhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 134 PLMPSIRACLEH-RHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFL 180 (948)
T ss_pred hhHHHHHHHHhC-cchhhhhhhheeehhHHhhhhhhcCChHHHHHHHH
Confidence 344444455554 3356666666666666644221 14444444444
No 148
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.01 E-value=38 Score=41.40 Aligned_cols=184 Identities=14% Similarity=0.110 Sum_probs=95.7
Q ss_pred HHHHhhhhccchH--hHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHH-----H
Q 001859 459 LYALGLIHANHGE--GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAG-----I 530 (1003)
Q Consensus 459 l~ALGLI~~g~~~--~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~Aa-----l 530 (1003)
-.=||++|+-+.+ .|+..|.+.|+=. .--.-|+++|++.|...+.+ +++..|.+.|...-+......+ .
T Consensus 322 W~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~ 398 (579)
T KOG1125|consen 322 WQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF 398 (579)
T ss_pred HHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence 3347888886653 4777888877631 12234778888888776644 7888888877543222111100 0
Q ss_pred HHhhhhcCCCchHHH-HHHHH----hhhcCchhHHHHHHHHHhHhccCCh---hhHHHHHHHHhcCCCh---hhHHHHHH
Q 001859 531 SMGLLMVGTASEKAG-EMLTY----AHETQHEKIIRGLALGIALTVYGRE---EEADTLIEQMTRDQDP---ILRYGGMY 599 (1003)
Q Consensus 531 ALGLI~~Gs~n~~a~-~LL~~----~~et~~e~i~r~~algLgLl~~G~~---e~ad~lie~L~~~~d~---i~R~~a~~ 599 (1003)
..+--+++ .... .+.++ ++.. ..++-.-+=.|||.+|+=.+ .++|-.-..|...++. +-|+|+.+
T Consensus 399 ~~~~s~~~---~~~l~~i~~~fLeaa~~~-~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 399 ENTKSFLD---SSHLAHIQELFLEAARQL-PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred cCCcCCCC---HHHHHHHHHHHHHHHHhC-CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 00000111 1111 22221 2211 11233334467888887755 3556666666665543 44888877
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC-CChHHHHHHH
Q 001859 600 ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP-EQTPRIVSLL 655 (1003)
Q Consensus 600 alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~-e~v~~ll~~L 655 (1003)
+- |.-+.+||+.--+ |++=.-.-||.-.=+||..+-+|.. |++.-++..|
T Consensus 475 AN-----~~~s~EAIsAY~r-ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 475 AN-----GNRSEEAISAYNR-ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred cC-----CcccHHHHHHHHH-HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 63 5566777774433 2322223445445566666666655 3444444433
No 149
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=53.91 E-value=1.3e+02 Score=38.18 Aligned_cols=87 Identities=13% Similarity=0.315 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChH------HHHHHHHHH----
Q 001859 137 AIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRRE------YRREVLRLL---- 206 (1003)
Q Consensus 137 ~iv~~~~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~------fr~~vL~~l---- 206 (1003)
++.-.--..-+..|++..|=|++|.+.|=|++..|..+.. +-.=.+.+|+.+++... +..+-|+-=
T Consensus 1080 dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~----lw~dalri~kdylp~q~a~iqeeyek~~~k~gargv 1155 (1636)
T KOG3616|consen 1080 DVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAE----LWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGV 1155 (1636)
T ss_pred HHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhc----cChHHHHHHHhhChhHHHHHHHHHHHHHHhcccccc
Confidence 3333445567788899999999999999999988876622 22223344555544321 111111110
Q ss_pred ------HHHHhcCCCccHHHHHHHHHhcC
Q 001859 207 ------VKVYQKLPSPDYLSICQCLMFLD 229 (1003)
Q Consensus 207 ------~~iy~~~~~~dy~~~~~~~i~Ln 229 (1003)
.+-+. +.-||..+..|++++|
T Consensus 1156 d~fvaqak~we--q~gd~rkav~~~lkin 1182 (1636)
T KOG3616|consen 1156 DGFVAQAKEWE--QAGDWRKAVDALLKIN 1182 (1636)
T ss_pred HHHHHHHHHHH--hcccHHHHHHHHhhhc
Confidence 01111 2348999999999984
No 150
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=53.71 E-value=1.7e+02 Score=30.98 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhc-CCC-cHHHHHHHhhhcC-CChhHHHHHHH
Q 001859 627 DDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCA-GTG-LSEAISLLEPLTS-DVVDFVRQGAL 703 (1003)
Q Consensus 627 ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~a-Gtg-~~~aIdlL~~l~~-D~dd~Vrq~Ai 703 (1003)
++......+|-.+...|+.+.+...++............-..+|..+.+. |.. ..+++.+|..... ||++ + .|.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~-~--~al 147 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE-V--TAL 147 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC-h--hHH
Confidence 34444455555555555555555555444433322222222222222112 211 3667776666554 5543 2 233
Q ss_pred HHHHHHhccc
Q 001859 704 IAMAMVMVQI 713 (1003)
Q Consensus 704 iALGlI~~gt 713 (1003)
.-||++....
T Consensus 148 ~~LA~~~~~~ 157 (198)
T PRK10370 148 MLLASDAFMQ 157 (198)
T ss_pred HHHHHHHHHc
Confidence 4444444443
No 151
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.01 E-value=94 Score=32.67 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCChhhHHHHHH
Q 001859 578 ADTLIEQMTRDQDPILRYGGMY 599 (1003)
Q Consensus 578 ad~lie~L~~~~d~i~R~~a~~ 599 (1003)
...++.....+++++.|+.++.
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v 142 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIV 142 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHH
Confidence 3344444444455555554443
No 152
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=52.69 E-value=45 Score=36.69 Aligned_cols=122 Identities=21% Similarity=0.180 Sum_probs=62.4
Q ss_pred ccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc-CCC-hhHHHHHHHHHhhhcCCCCCCh
Q 001859 571 VYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS-DVS-DDVRRTAVLALGFVLYSEPEQT 648 (1003)
Q Consensus 571 ~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs-d~~-ddvrr~Avl~LGlI~~g~~e~v 648 (1003)
-.|+-+.+..+++.+......-......+..|..|.-.|+.+...+.+.-+++ +.+ .+++. .++-.+|-.|+.+.+
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~--~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN--ALAWLLIDMGDYDEA 199 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH--HHHHHHCTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHCCChHHH
Confidence 34566677777776654321111122234456667788888666667766665 322 23332 222233444555555
Q ss_pred HHHHHHHhhc--CCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcC-CChhH
Q 001859 649 PRIVSLLSES--YNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDF 697 (1003)
Q Consensus 649 ~~ll~~L~~s--~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~-D~dd~ 697 (1003)
..++..+... .||.+.. ++|.+....|. ..+|+..++...+ +|+|.
T Consensus 200 ~~~l~~~~~~~~~~~~~~~--~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWD--ALAAAYLQLGR-YEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCH--HHHHHHHHHT--HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHCcCHHHHHH--HHHHHhccccc-ccccccccccccccccccc
Confidence 5666665554 3555443 34444443443 5778887777775 55543
No 153
>PRK14574 hmsH outer membrane protein; Provisional
Probab=52.26 E-value=6.7e+02 Score=32.83 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=84.3
Q ss_pred HHHHHHhcCCCCH-HHHHHHHHhhcCCChh---h-HHHHHHHHhhhhcCCCchHHH-HHHHHhhh--------------c
Q 001859 495 LGLGLAALGTADE-DIYDDIKNVLYTDSAV---A-GEAAGISMGLLMVGTASEKAG-EMLTYAHE--------------T 554 (1003)
Q Consensus 495 LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~---~-~e~AalALGLI~~Gs~n~~a~-~LL~~~~e--------------t 554 (1003)
-++|-+|++.+.+ .+..++..++..+.+. . ......+|--.++-++.-+-. .++.-+.+ +
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 4556667776655 5666666666433211 0 011123444555666654333 44442221 1
Q ss_pred CchhHHH-HHHHHHhHhccCChhhHHHHHHHHhcC--CChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHH
Q 001859 555 QHEKIIR-GLALGIALTVYGREEEADTLIEQMTRD--QDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRR 631 (1003)
Q Consensus 555 ~~e~i~r-~~algLgLl~~G~~e~ad~lie~L~~~--~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr 631 (1003)
.|+.+.. ...++..+++.|+-..+...++.+... .|+-++ +..+-.+...|++.....+++.+.....++..-
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~----~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLR----IALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 2333332 233555567778888888888877653 233333 345666778888877777777765544444433
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHhhc
Q 001859 632 TAVLALGFVLYSEPEQTPRIVSLLSES 658 (1003)
Q Consensus 632 ~Avl~LGlI~~g~~e~v~~ll~~L~~s 658 (1003)
-...+...+..++-.++..++..|.+.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 334444444445555555556555443
No 154
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.83 E-value=89 Score=36.29 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=58.1
Q ss_pred HhhcCCchhhHHHHHHHHHHhcCCC--cHHHHH------HHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHH
Q 001859 655 LSESYNPHVRYGAALAVGISCAGTG--LSEAIS------LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRR 726 (1003)
Q Consensus 655 L~~s~np~VR~gaalALGl~~aGtg--~~~aId------lL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr 726 (1003)
+.++.++.+|..++-.+|-+.-.+| ...+++ ++..+++|.++.||..|++|++...-... |-..+|++
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~----~g~~~fl~ 207 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNK----PGQDEFLK 207 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc----HHHHHHHh
Confidence 5567777788888888877644433 122232 56667788888999999999997654222 22444543
Q ss_pred -----HHHHHHhhhcCChhhHHHHHHHhhhh
Q 001859 727 -----QLEKIILDKHEDTMSKMGAILASGIL 752 (1003)
Q Consensus 727 -----~L~~~~~~~~~d~~~rfga~lAqGLl 752 (1003)
-|..++..+..+...+.-|..-++.+
T Consensus 208 ~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 208 LNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred cCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 46666654445566555555544443
No 155
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=50.42 E-value=1.1e+02 Score=36.98 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCchhhHH----------HHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 001859 139 VERMLDKCITDGKYQQAM----------GIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVK 208 (1003)
Q Consensus 139 v~~~~~~~~~~~~~~~Ai----------gialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~ 208 (1003)
-+++..|.-++|-...|+ +|||++.+||.=.++.++ .+......-+-+.+.. .-=++++-+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~-~~~~~~W~~Lg~~AL~--------~g~~~lAe~ 368 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE-LDDPEKWKQLGDEALR--------QGNIELAEE 368 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC-CSTHHHHHHHHHHHHH--------TTBHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh-cCcHHHHHHHHHHHHH--------cCCHHHHHH
Confidence 556677777777766665 678888888877777665 3333333333333321 111245556
Q ss_pred HHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHHhccCCccHHHHhhhhhcccc
Q 001859 209 VYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVE 262 (1003)
Q Consensus 209 iy~~~~~~dy~~~~~~~i~Lnd~~~v~~il~~L~~~~~~~~~l~ayQiafdL~~ 262 (1003)
-|.+.. ||-.++-.+.-.+|.+.++++.+.... ..+..+++|.+|.+.+
T Consensus 369 c~~k~~--d~~~L~lLy~~~g~~~~L~kl~~~a~~---~~~~n~af~~~~~lgd 417 (443)
T PF04053_consen 369 CYQKAK--DFSGLLLLYSSTGDREKLSKLAKIAEE---RGDINIAFQAALLLGD 417 (443)
T ss_dssp HHHHCT---HHHHHHHHHHCT-HHHHHHHHHHHHH---TT-HHHHHHHHHHHT-
T ss_pred HHHhhc--CccccHHHHHHhCCHHHHHHHHHHHHH---ccCHHHHHHHHHHcCC
Confidence 666655 787777777788888888888777654 3566778888887755
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=49.04 E-value=1.4e+02 Score=29.34 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=49.2
Q ss_pred hHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcC--CCh-hhHHHHHHHHhhhhcCCCchHHH
Q 001859 470 GEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYT--DSA-VAGEAAGISMGLLMVGTASEKAG 545 (1003)
Q Consensus 470 ~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~--Ds~-~~~e~AalALGLI~~Gs~n~~a~ 545 (1003)
.+.|+.+-...+...-+...+..+.+++|-.+-..++. ++...|...+.. ++. ...-.+.++|.|...|...+-+.
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence 35788888777775444667788888888887655553 677777776643 111 12223556677777776544333
Q ss_pred HHHH
Q 001859 546 EMLT 549 (1003)
Q Consensus 546 ~LL~ 549 (1003)
.+|.
T Consensus 97 ~~l~ 100 (120)
T PF12688_consen 97 WLLE 100 (120)
T ss_pred HHHH
Confidence 4444
No 157
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.77 E-value=30 Score=42.25 Aligned_cols=126 Identities=20% Similarity=0.197 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHhhhhH-------------------hhhcHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHcccc
Q 001859 22 SLKLHALSNLNSFVDQFWPE-------------------ISTSVPIIESLYED-----EEFDQHQRQLAALLVSKVFYYL 77 (1003)
Q Consensus 22 ~l~~~AL~~L~~~v~~~w~e-------------------i~~~~~~ie~lye~-----~~f~~~~r~laA~v~Skvy~~l 77 (1003)
.++.-||+.|..-|+..-+. =++++..|+++|=+ .+-. .-++ -.++.++||..
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~--Dpdv-Q~~LGVLy~ls 443 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI--DPDV-QSGLGVLYNLS 443 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC--ChhH-HhhhHHHHhcc
Confidence 57888999999987776322 12345666666532 2100 1122 26789999999
Q ss_pred CCch---hHHHHHhhcCCCCCCCCCchHHHHHH-----HHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhc
Q 001859 78 GELN---DSLSYALGAGSLFDVSEDSDYVHTLL-----AKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITD 149 (1003)
Q Consensus 78 ge~~---esL~yaL~ag~~fd~~~~~eYv~~l~-----~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~~~~~~~ 149 (1003)
|+|+ ||++.||.= .--|-.-|.-+=-||+ .+.|..|.+.-+=. ..-|+.| --|==.||.-
T Consensus 444 ~efdraiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~yVR~R-----yNlgIS~mNl 511 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PGYVRVR-----YNLGISCMNL 511 (579)
T ss_pred hHHHHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CCeeeee-----hhhhhhhhhh
Confidence 9998 899999994 5667777877777777 67899997654321 0112112 1234479999
Q ss_pred CchhhHHHHHHhc
Q 001859 150 GKYQQAMGIAIEC 162 (1003)
Q Consensus 150 ~~~~~AigialE~ 162 (1003)
|+|++|+.-+|++
T Consensus 512 G~ykEA~~hlL~A 524 (579)
T KOG1125|consen 512 GAYKEAVKHLLEA 524 (579)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999998886
No 158
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.86 E-value=1.1e+02 Score=40.62 Aligned_cols=233 Identities=16% Similarity=0.156 Sum_probs=115.8
Q ss_pred hhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchH-----------hHHHHHHhhcccCCchhHHHHHHHHHHHH
Q 001859 432 QGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE-----------GIKQFLRDSLRSTNVEVIQHGACLGLGLA 500 (1003)
Q Consensus 432 ~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~-----------~al~~L~~~L~~~~~~~vr~GA~LGLGla 500 (1003)
..+..+-||+-.-- .++..-+++.|+..|--+-+.+.+ -.+.-|...+.+++..++|..-+-.|+..
T Consensus 458 ~~LDRVlPY~v~l~--~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~L 535 (1431)
T KOG1240|consen 458 VKLDRVLPYFVHLL--MDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQL 535 (1431)
T ss_pred HHHhhhHHHHHHHh--cCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHH
Confidence 34555556653210 124567889998888776666542 12333333334434468887777766654
Q ss_pred hcCCCCH--HHHHHHHHh-hcCCChhhHHHHHHHHhhhhcCCCchHHHHHHHHhh------hcCch-hHHHHHHHHHhH-
Q 001859 501 ALGTADE--DIYDDIKNV-LYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAH------ETQHE-KIIRGLALGIAL- 569 (1003)
Q Consensus 501 ~~Gs~~e--~~~e~L~~~-L~~Ds~~~~e~AalALGLI~~Gs~n~~a~~LL~~~~------et~~e-~i~r~~algLgL- 569 (1003)
+ -+... +....|... +.++ ...+.++.. ..+.+...|++.+. =++++ -++|.+.-.|+.
T Consensus 536 A-~tA~rFle~~q~~~~~g~~n~--~nset~~~~-------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~L 605 (1431)
T KOG1240|consen 536 A-KTAYRFLELTQELRQAGMLND--PNSETAPEQ-------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPL 605 (1431)
T ss_pred H-HHHHHHHHHHHHHHhcccccC--ccccccccc-------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 2 11111 111222222 1111 111111111 11222222222111 02333 444555444443
Q ss_pred -hccCChhhHHHHHHHH---hcCCChhhHHHHHHHH--HHhhcCCCC-HHHHHHHHHHHhcCCChhHHHHHHHHHh-hhc
Q 001859 570 -TVYGREEEADTLIEQM---TRDQDPILRYGGMYAL--ALAYSGTAN-NKAIRQLLHFAVSDVSDDVRRTAVLALG-FVL 641 (1003)
Q Consensus 570 -l~~G~~e~ad~lie~L---~~~~d~i~R~~a~~al--glAyaGTGn-~~aI~~LL~~~vsd~~ddvrr~Avl~LG-lI~ 641 (1003)
.|+|++..=|.++--| .+++|+-+|.+=.=.+ -++|+|+-. .+.+-.||+-...|..+-|---|.-+|- +|=
T Consensus 606 C~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 606 CVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 4899887666555544 3566777775422111 256899984 5777788888888888876544433332 111
Q ss_pred C---CCC--CChHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 001859 642 Y---SEP--EQTPRIVSLLSESYNPHVRYGAALAVGISCA 676 (1003)
Q Consensus 642 ~---g~~--e~v~~ll~~L~~s~np~VR~gaalALGl~~a 676 (1003)
. +.+ -.+...+-.|+-+.|..||++++..+..++.
T Consensus 686 ~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 686 LGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 1 222 1122223344556788899998877665543
No 159
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=47.55 E-value=4.5e+02 Score=29.48 Aligned_cols=89 Identities=15% Similarity=-0.016 Sum_probs=35.6
Q ss_pred HHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCC--ChhH--HHHHHHHHhhh
Q 001859 565 LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV--SDDV--RRTAVLALGFV 640 (1003)
Q Consensus 565 lgLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~--~ddv--rr~Avl~LGlI 640 (1003)
+|..+...|+-+.+....+......... ......+|.+|...|+.+....++.-+.... +.+. .....++...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 4444455555444444443333221111 1122344555555565444333433333211 1111 12223444444
Q ss_pred cCCCCCChHHHHHHH
Q 001859 641 LYSEPEQTPRIVSLL 655 (1003)
Q Consensus 641 ~~g~~e~v~~ll~~L 655 (1003)
..|+.+.+.++++.+
T Consensus 198 ~~G~~~~A~~~~~~~ 212 (355)
T cd05804 198 ERGDYEAALAIYDTH 212 (355)
T ss_pred HCCCHHHHHHHHHHH
Confidence 455555555555443
No 160
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=46.68 E-value=6.2e+02 Score=33.46 Aligned_cols=213 Identities=14% Similarity=0.171 Sum_probs=113.1
Q ss_pred HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH----
Q 001859 471 EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG---- 545 (1003)
Q Consensus 471 ~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~---- 545 (1003)
..++.+-...|..+ +.....--+|+|.....-++ +.+.-.....|.-|. ..-.|..|||.+-+-..+.+..
T Consensus 181 ~~al~yyk~al~in--p~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp--~~v~alv~L~~~~l~~~d~~s~~~~~ 256 (1018)
T KOG2002|consen 181 RGALKYYKKALRIN--PACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP--TCVSALVALGEVDLNFNDSDSYKKGV 256 (1018)
T ss_pred HHHHHHHHHHHhcC--cccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHccchHHHHHHH
Confidence 46888887766642 12222222333333222111 344444455553343 3335778899888877777655
Q ss_pred HHHHHhhh-cCchhHHHHHHHHHhHhccCChhhHHHHHHHHh-cCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc
Q 001859 546 EMLTYAHE-TQHEKIIRGLALGIALTVYGREEEADTLIEQMT-RDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 623 (1003)
Q Consensus 546 ~LL~~~~e-t~~e~i~r~~algLgLl~~G~~e~ad~lie~L~-~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs 623 (1003)
.+++-+-. .++.++.-. -|+==+.|-|+-+.+..+.+... ...+..++.-+.|-+|=+|--+||.+..-+.-.-+.-
T Consensus 257 ~ll~~ay~~n~~nP~~l~-~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALN-HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHhhcCCCcHHHH-HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 33332222 222222221 12333445566677766665433 2334445555678889999999998776655444332
Q ss_pred CCChhHHHHHHHHHhhhcCCCCC--ChHHHHH-HHhhcCCchhhHHHHHHHHHHhcCCC-----cHHHHHHHhhhcC
Q 001859 624 DVSDDVRRTAVLALGFVLYSEPE--QTPRIVS-LLSESYNPHVRYGAALAVGISCAGTG-----LSEAISLLEPLTS 692 (1003)
Q Consensus 624 d~~ddvrr~Avl~LGlI~~g~~e--~v~~ll~-~L~~s~np~VR~gaalALGl~~aGtg-----~~~aIdlL~~l~~ 692 (1003)
.+++---.+..|||-+.+.+-+ ...-.++ .+.+..| -+-..-.||++|++.+ ...+.++|.+.+.
T Consensus 336 -~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~---~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 336 -ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN---NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred -cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc---hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 2222244567788877776542 2222233 3333333 2456778999999884 3455555555543
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.49 E-value=68 Score=41.99 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.3
Q ss_pred hhcCCChhHHHHHHHHHHHHHhcccc
Q 001859 689 PLTSDVVDFVRQGALIAMAMVMVQIN 714 (1003)
Q Consensus 689 ~l~~D~dd~Vrq~AiiALGlI~~gt~ 714 (1003)
.+.+|....||...+++|.-.+.|..
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhH
Confidence 44567777888887777777776643
No 162
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=46.49 E-value=2.4e+02 Score=30.02 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-HHhhhcC
Q 001859 614 IRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLTS 692 (1003)
Q Consensus 614 I~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-lL~~l~~ 692 (1003)
-..|+..+..|.+..+|.+|+-.|+-++-|. ...+..- +..+.+.+-..+++--++.. -.+.=. ++..+.+
T Consensus 41 ~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----k~~L~~A-e~~~~~~~sFtslS~tLa~~---i~~lH~~Ll~~L~~ 112 (182)
T PF13251_consen 41 TPSLLTCILKDPSPKVRAAAASALAALLEGS----KPFLAQA-EESKGPSGSFTSLSSTLASM---IMELHRGLLLALQA 112 (182)
T ss_pred CcchhHHHHcCCchhHHHHHHHHHHHHHHcc----HHHHHHH-HhcCCCCCCcccHHHHHHHH---HHHHHHHHHHHHhc
Confidence 3458888888999999999999998887774 2222222 22233333344444333210 111222 4555555
Q ss_pred CChhHHHHHHHHHHHHHhccccccccch--HHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhc
Q 001859 693 DVVDFVRQGALIAMAMVMVQINEANDSR--VGTFRRQLEKIILDKHEDTMSKMGAILASGILD 753 (1003)
Q Consensus 693 D~dd~Vrq~AiiALGlI~~gt~~a~~pk--va~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 753 (1003)
..+.-+-...+-.++.....++-.|.|. +..+.+++..++ .|+|++++-.+-..+|.+-
T Consensus 113 E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l--~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 113 EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLL--RHRDPNVRVAALSCLGALL 173 (182)
T ss_pred ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHH
Confidence 6666666677778887777777766542 445666777777 5799999999988888763
No 163
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=45.04 E-value=9.7e+02 Score=32.63 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhh--hcCCCCCC---hHHHHHHHhhcCCchhhHHHHHHHH--HHhcCCCc-HHHH-
Q 001859 614 IRQLLHFAVSDVSDDVRRTAVLALGF--VLYSEPEQ---TPRIVSLLSESYNPHVRYGAALAVG--ISCAGTGL-SEAI- 684 (1003)
Q Consensus 614 I~~LL~~~vsd~~ddvrr~Avl~LGl--I~~g~~e~---v~~ll~~L~~s~np~VR~gaalALG--l~~aGtg~-~~aI- 684 (1003)
|+++...+++|...-|||..+-+|+- ++||.... +.+.+-..+.+.|++.|.+---.+. .+|.|.-. .+-|
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyll 658 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLL 658 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHH
Confidence 44455555567777788888777664 45676643 4444444456778888876554443 24566542 2222
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHH
Q 001859 685 SLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGA 745 (1003)
Q Consensus 685 dlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga 745 (1003)
-+|..-..|+.++|--.|+-++. ++++...-+-|.+.++++...-++ =|-+.=+|.++
T Consensus 659 PLl~Q~ltD~EE~Viv~aL~~ls-~Lik~~ll~K~~v~~i~~~v~PlL--~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 659 PLLQQGLTDGEEAVIVSALGSLS-ILIKLGLLRKPAVKDILQDVLPLL--CHPNLWIRRAV 716 (1431)
T ss_pred HHHHHhccCcchhhHHHHHHHHH-HHHHhcccchHHHHHHHHhhhhhe--eCchHHHHHHH
Confidence 37777778999988888887776 344555555566767766655555 25555556554
No 164
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.08 E-value=83 Score=39.34 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=61.2
Q ss_pred chhhHHHHHHHHHHhcCCCc--HHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCC
Q 001859 661 PHVRYGAALAVGISCAGTGL--SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHED 738 (1003)
Q Consensus 661 p~VR~gaalALGl~~aGtg~--~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d 738 (1003)
-.||.++.-+++....++|. ..+++.|-.|.+|..+.||--|+.+|-+|..--. -++-++..++..|. +..
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-i~eeql~~il~~L~------D~s 459 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-IREEQLRQILESLE------DRS 459 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-ecHHHHHHHHHHHH------hcC
Confidence 46999999999888776664 6788899999999999999999999999975311 12222433443332 345
Q ss_pred hhhHHHHHHHhhhhc
Q 001859 739 TMSKMGAILASGILD 753 (1003)
Q Consensus 739 ~~~rfga~lAqGLl~ 753 (1003)
+++|-+.+.-++...
T Consensus 460 ~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 460 VDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777766665543
No 165
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.96 E-value=5.1e+02 Score=28.81 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=20.9
Q ss_pred HhHHHHHHhhcccCC-chhHHHHHHHH-HHHHhcCCCCH-HHHHHHHHh
Q 001859 471 EGIKQFLRDSLRSTN-VEVIQHGACLG-LGLAALGTADE-DIYDDIKNV 516 (1003)
Q Consensus 471 ~~al~~L~~~L~~~~-~~~vr~GA~LG-LGla~~Gs~~e-~~~e~L~~~ 516 (1003)
+.....|.+.|.+.. +..-|.+.+-- ..++..|..+- ++++++.-+
T Consensus 18 ~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~ 66 (324)
T PF11838_consen 18 EENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYL 66 (324)
T ss_dssp TTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 356667777776422 34444443322 22344455544 444444444
No 166
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=42.64 E-value=7.8e+02 Score=30.80 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=52.4
Q ss_pred cCCChhHHHHHHHHHhhhcCC-CCCChHHHHHHHhhcC---CchhhHHHHHHHHHHhcCCC------cHHHHHHHhhhcC
Q 001859 623 SDVSDDVRRTAVLALGFVLYS-EPEQTPRIVSLLSESY---NPHVRYGAALAVGISCAGTG------LSEAISLLEPLTS 692 (1003)
Q Consensus 623 sd~~ddvrr~Avl~LGlI~~g-~~e~v~~ll~~L~~s~---np~VR~gaalALGl~~aGtg------~~~aIdlL~~l~~ 692 (1003)
.|....||++|.-+.=-|+.. ++..+..++-.+..+. ..--+.++...+|+.--.-+ -+++|--|..-++
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~ 305 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW 305 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc
Confidence 355667777665554333322 2233333333333222 22344455555554311111 1344445555667
Q ss_pred CChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Q 001859 693 DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKII 732 (1003)
Q Consensus 693 D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~ 732 (1003)
|+...||.+++-+|=-++.-- .||.|..+.-.|-.-+
T Consensus 306 DT~~evr~a~~~~l~~~~svi---dN~dI~~~ip~Lld~l 342 (569)
T KOG1242|consen 306 DTKPEVRKAGIETLLKFGSVI---DNPDIQKIIPTLLDAL 342 (569)
T ss_pred cCCHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHh
Confidence 888888888887766555432 2344554444444433
No 167
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=42.53 E-value=3e+02 Score=34.26 Aligned_cols=206 Identities=20% Similarity=0.231 Sum_probs=117.2
Q ss_pred HHHHHhhccCCChhHHHHHHHHHH-----HHHHhhhhHhhhcHHHHHHHh-cccCCCHHHHHHHHHHHHHHccccC----
Q 001859 9 AGGLLAMLNESHPSLKLHALSNLN-----SFVDQFWPEISTSVPIIESLY-EDEEFDQHQRQLAALLVSKVFYYLG---- 78 (1003)
Q Consensus 9 a~~~l~lL~e~d~~l~~~AL~~L~-----~~v~~~w~ei~~~~~~ie~ly-e~~~f~~~~r~laA~v~Skvy~~lg---- 78 (1003)
--++|++|+|++.+-- .-|.+++ .++.+-.+ ...+....+.+ .++.-++-.-..+-+++|.++..=-
T Consensus 367 ~FsVlTRLkep~~~~~-~ll~Kmr~Y~GE~~~~~d~~--~~~~~e~rd~ag~dEGM~Gis~Rf~~~~ls~~~~~d~~~vi 443 (649)
T COG2766 367 LFSVLTRLKEPDNSDI-DLLSKMRLYDGESLKGTDPK--AKSVQEYRDEAGVDEGMNGISTRFAFKILSRAFNFDHEEVI 443 (649)
T ss_pred HHHHHhhccCcccccH-HHHHHHHHhcCcccccCCcc--hhhHHHHHHhhCccccccCCChHHHHHHHHHHHhhhhHhhc
Confidence 3468999999987610 1122222 22222222 34555566666 2332222234555677776654310
Q ss_pred CchhHHHHHhhcC---CCCCCCCCchHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHH---HHHHhcCch
Q 001859 79 ELNDSLSYALGAG---SLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERML---DKCITDGKY 152 (1003)
Q Consensus 79 e~~esL~yaL~ag---~~fd~~~~~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~---~~~~~~~~~ 152 (1003)
.-.+-|.|.+.+- ..|.-.+.-.|.+.+.+.+..+|.+...+.....- -..-+..=+.++++-+ ..++++..+
T Consensus 444 ~~~~~L~~ive~~~~~~~f~~e~~~~yl~fv~~~~~~~Y~e~~~keVq~A~-l~sy~E~~~~l~d~Yvdnv~Awi~d~~~ 522 (649)
T COG2766 444 APPVHLFYIVEGLIEREQFSDEERERYLDFVKGYLRPEYAEFIGKEVQKAY-LESYSEYGQNLFDRYVDNVDAWINDQTV 522 (649)
T ss_pred CChHHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhccCcc
Confidence 1127788888841 23444455789999999999999887654321000 0001111122444443 456677777
Q ss_pred hh-HHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcC--CCccHHHHHHHHHhcC
Q 001859 153 QQ-AMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKL--PSPDYLSICQCLMFLD 229 (1003)
Q Consensus 153 ~~-AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~--~~~dy~~~~~~~i~Ln 229 (1003)
++ +-|=-+|=.-|++...-|.+. ..+. --.+.+||++|...+++.|..- ..|||.+
T Consensus 523 ~D~~TGee~~pd~le~~L~~iEe~----------~Gis--~da~kdFR~eiv~~~~~A~a~r~G~~~d~~s--------- 581 (649)
T COG2766 523 RDPATGEELNPDALEKELRSIEEQ----------AGIS--NDAPKDFRNEIVNFVLRARARRNGKNPDWTS--------- 581 (649)
T ss_pred cCcccccccCccHHHHHHHHHHHh----------cCCC--ccchHHHHHHHHHHHHHHHHHhcCCCCCccc---------
Confidence 77 888877777777776666541 0111 1147899999999999777754 5788843
Q ss_pred ChHHHHHHHHH
Q 001859 230 EPEGVVSILEK 240 (1003)
Q Consensus 230 d~~~v~~il~~ 240 (1003)
.+..+++|++
T Consensus 582 -~e~LReviek 591 (649)
T COG2766 582 -YEKLREVIEK 591 (649)
T ss_pred -cHHHHHHHHH
Confidence 5566666665
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=42.53 E-value=1.3e+02 Score=38.58 Aligned_cols=96 Identities=11% Similarity=0.169 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCC--hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCC
Q 001859 137 AIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDN--VHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLP 214 (1003)
Q Consensus 137 ~iv~~~~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~--~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~ 214 (1003)
.|+.|+-+||..|..|.-|+.+++=+|.+.--.+++.. .| +.+=+.-++.....-..|.+-|.+||..+-++.++..
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG 1159 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQG 1159 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999988777777654 33 2233344445555455677789999999999999977
Q ss_pred CccHHHHHHHHHhcCChHHHH
Q 001859 215 SPDYLSICQCLMFLDEPEGVV 235 (1003)
Q Consensus 215 ~~dy~~~~~~~i~Lnd~~~v~ 235 (1003)
+|..+.+=+-+-+|.-.+-
T Consensus 1160 --~Yh~AtKKfTQAGdKl~AM 1178 (1416)
T KOG3617|consen 1160 --AYHAATKKFTQAGDKLSAM 1178 (1416)
T ss_pred --chHHHHHHHhhhhhHHHHH
Confidence 9988888877777665443
No 169
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=42.31 E-value=5.5e+02 Score=28.93 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=49.6
Q ss_pred HhhcccCCchhHHHHHHHHHHHHhcCCCC--HHHHHHHHHhhcCCChhhHHHHHHHH-------hhhhcCCCch------
Q 001859 478 RDSLRSTNVEVIQHGACLGLGLAALGTAD--EDIYDDIKNVLYTDSAVAGEAAGISM-------GLLMVGTASE------ 542 (1003)
Q Consensus 478 ~~~L~~~~~~~vr~GA~LGLGla~~Gs~~--e~~~e~L~~~L~~Ds~~~~e~AalAL-------GLI~~Gs~n~------ 542 (1003)
.+.+.+ .+..+|.-|+-+||+.++=..+ .+.+..+...+..++...+..|.-++ |.-.+.+...
T Consensus 33 ~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 33 LPAVQS-SDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 345555 3467777777777776544321 13444455555444433333222221 2222222222
Q ss_pred --HHHHHHHHhhhcCchhHHHHHHHHHhHhccCC
Q 001859 543 --KAGEMLTYAHETQHEKIIRGLALGIALTVYGR 574 (1003)
Q Consensus 543 --~a~~LL~~~~et~~e~i~r~~algLgLl~~G~ 574 (1003)
.+..++....+..+.+++-.++.|++.+++.+
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 23344443344557778888888888887653
No 170
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.31 E-value=3.1e+02 Score=34.07 Aligned_cols=150 Identities=21% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCChhhHHHHHHHHHHhhcCCCCHH--HHHHHH---HHHhcCCChhHHHHHHHHH---hhhcCCCC----CChHHHHHHH
Q 001859 588 DQDPILRYGGMYALALAYSGTANNK--AIRQLL---HFAVSDVSDDVRRTAVLAL---GFVLYSEP----EQTPRIVSLL 655 (1003)
Q Consensus 588 ~~d~i~R~~a~~alglAyaGTGn~~--aI~~LL---~~~vsd~~ddvrr~Avl~L---GlI~~g~~----e~v~~ll~~L 655 (1003)
..+.-.|.||-++++..-+|-|+.. -.++++ -.|.+|.+..||-+|..++ |.|+=|+- +.+...+..+
T Consensus 54 s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kl 133 (675)
T KOG0212|consen 54 SPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKL 133 (675)
T ss_pred CcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence 3444445565554444433444433 223222 2356788888998877665 55554442 4566777778
Q ss_pred hhcCCchhhHHHHHHHHHHh------cCCC-cHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHH
Q 001859 656 SESYNPHVRYGAALAVGISC------AGTG-LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQL 728 (1003)
Q Consensus 656 ~~s~np~VR~gaalALGl~~------aGtg-~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L 728 (1003)
..+.++.||-|+-+--.++= +.|= -++.|.+|.--..+.++++||.-+-=+-.+-.-..-..+..+-.++..|
T Consensus 134 saDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGL 213 (675)
T KOG0212|consen 134 SADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGL 213 (675)
T ss_pred hcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHH
Confidence 88999999999877665541 1121 2455667777778889999998765555444433222223355677777
Q ss_pred HHHHhhhcC
Q 001859 729 EKIILDKHE 737 (1003)
Q Consensus 729 ~~~~~~~~~ 737 (1003)
-++++|.+.
T Consensus 214 f~~LsD~s~ 222 (675)
T KOG0212|consen 214 FNMLSDSSD 222 (675)
T ss_pred HHHhcCCcH
Confidence 788876444
No 171
>PRK11189 lipoprotein NlpI; Provisional
Probab=41.55 E-value=5.5e+02 Score=28.76 Aligned_cols=228 Identities=19% Similarity=0.123 Sum_probs=118.9
Q ss_pred HhHHHHHHhhcccC-CchhHHHHHHHHHHHHhcCCCCH-HHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HH
Q 001859 471 EGIKQFLRDSLRST-NVEVIQHGACLGLGLAALGTADE-DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EM 547 (1003)
Q Consensus 471 ~~al~~L~~~L~~~-~~~~vr~GA~LGLGla~~Gs~~e-~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~L 547 (1003)
+.+++.+.+.|... -+...+......+|.++...++. .+...+...+..+.... .+-..+|.++.-.++.+.. +.
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 55777777777532 12345556667777777665543 66667777664332221 2445677777777766544 55
Q ss_pred HHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhc-CC-ChhhHHHHHHHHHHhhcCCCC-HHHHHHHHHHHhcC
Q 001859 548 LTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQ-DPILRYGGMYALALAYSGTAN-NKAIRQLLHFAVSD 624 (1003)
Q Consensus 548 L~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~-~~-d~i~R~~a~~alglAyaGTGn-~~aI~~LL~~~vsd 624 (1003)
+..+.+-+.+...-..-+|+.+...|+.+.+-..++.... .+ ++. |.. + ..+.-. .++ .++++.+-..+...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~--~-~~l~~~-~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RAL--W-LYLAES-KLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHH--H-HHHHHc-cCCHHHHHHHHHHHHhhC
Confidence 5444333222222334466666777888777666655443 33 332 211 1 112222 344 45666554443222
Q ss_pred CChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHH-----HHHHHHHHhcCCCc-HHHHHHHhhhc-CCChhH
Q 001859 625 VSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYG-----AALAVGISCAGTGL-SEAISLLEPLT-SDVVDF 697 (1003)
Q Consensus 625 ~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~g-----aalALGl~~aGtg~-~~aIdlL~~l~-~D~dd~ 697 (1003)
..+... .++..+..|+.... ..+..+.+..+..++.+ +=+-||.++...|+ .+|+..+.... .+|.+|
T Consensus 196 ~~~~~~----~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 DKEQWG----WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CccccH----HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 222222 23444445554322 23444443333333322 34566777777775 56777666655 466566
Q ss_pred H-HHHHHHHHHHHh
Q 001859 698 V-RQGALIAMAMVM 710 (1003)
Q Consensus 698 V-rq~AiiALGlI~ 710 (1003)
| .+.|.+-++.+.
T Consensus 271 ~e~~~~~~e~~~~~ 284 (296)
T PRK11189 271 VEHRYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 5 567787887764
No 172
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=41.36 E-value=1e+03 Score=31.86 Aligned_cols=226 Identities=11% Similarity=-0.039 Sum_probs=127.4
Q ss_pred hhhHHHHHhhhhccch-HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCChhhHHHHHHHH
Q 001859 455 EGGALYALGLIHANHG-EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSAVAGEAAGISM 532 (1003)
Q Consensus 455 k~GAl~ALGLI~~g~~-~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~~~~e~AalAL 532 (1003)
...+.+.+|.+..... ++|+..+.+.+....+. ..-+++|.+....++ +++...+...+..+.. . .+.+.+
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~--~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMS-N--EDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c--HHHHHH
Confidence 4556777777766532 46888777766543222 236677776444443 4666666665533221 1 223556
Q ss_pred hhhhcCCCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHhhcCCCC
Q 001859 533 GLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTAN 610 (1003)
Q Consensus 533 GLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~-~~d~i~R~~a~~alglAyaGTGn 610 (1003)
|.++...|+.+.. ..+..+.....+.......++..+...|+.+.+...++.... .+++ ..-+.+|.++...|+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~----~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSA----NAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHCCC
Confidence 6666666665544 555433333222233333445555556888777666655443 3432 234567788889999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhc--CCchhhHHHHHHHHHHhcCCCc-HHHHHHH
Q 001859 611 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSES--YNPHVRYGAALAVGISCAGTGL-SEAISLL 687 (1003)
Q Consensus 611 ~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s--~np~VR~gaalALGl~~aGtg~-~~aIdlL 687 (1003)
.+.....+..+.....++..-...+|..+...|+.+.+...++...+. .++.+++..+.++ ...|+ .+|+..+
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al----~~lGd~~eA~~~l 700 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN----QRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHCCCHHHHHHHH
Confidence 876666666666655555555566666677777776666666655443 3454444444433 34455 4566666
Q ss_pred hhhcC-CCh
Q 001859 688 EPLTS-DVV 695 (1003)
Q Consensus 688 ~~l~~-D~d 695 (1003)
++... +|+
T Consensus 701 ~~Al~l~P~ 709 (987)
T PRK09782 701 RLVIDDIDN 709 (987)
T ss_pred HHHHhcCCC
Confidence 66654 553
No 173
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.49 E-value=90 Score=43.24 Aligned_cols=87 Identities=24% Similarity=0.322 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHhhhcCCCC------CChHHHHHHHhhcCCchhhHHHHHHHHHHh--cCC-Cc----HHHHHHHhhhcC
Q 001859 626 SDDVRRTAVLALGFVLYSEP------EQTPRIVSLLSESYNPHVRYGAALAVGISC--AGT-GL----SEAISLLEPLTS 692 (1003)
Q Consensus 626 ~ddvrr~Avl~LGlI~~g~~------e~v~~ll~~L~~s~np~VR~gaalALGl~~--aGt-g~----~~aIdlL~~l~~ 692 (1003)
++..|.+++-++|.++.--+ +++.-.+..|....||..|.|..+|+|++. .|. |+ ...+.+|-.+..
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~ 968 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT 968 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh
Confidence 55678889999988765433 456677888999999999999999999974 333 22 344557888888
Q ss_pred CChh-HHHHHHHHHHHHHhcc
Q 001859 693 DVVD-FVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 693 D~dd-~Vrq~AiiALGlI~~g 712 (1003)
|+.+ .|+..++.||++|.-.
T Consensus 969 Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 969 DSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred cCCCchhhhhHHHHHHHHHcC
Confidence 9887 9999999999998753
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=39.90 E-value=2.2e+02 Score=28.12 Aligned_cols=53 Identities=25% Similarity=0.182 Sum_probs=23.5
Q ss_pred ccCChhhHHHHHHHHhc-CCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc
Q 001859 571 VYGREEEADTLIEQMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 623 (1003)
Q Consensus 571 ~~G~~e~ad~lie~L~~-~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs 623 (1003)
..|+++++-.+.+.-.. .-+.-.|..+.+.+|..|--.|..+....+|+-...
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555544444433322 112223333444555555555555544445544443
No 175
>PRK04841 transcriptional regulator MalT; Provisional
Probab=37.00 E-value=1e+03 Score=30.66 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=41.2
Q ss_pred hcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhc--cchHhHHHHHHhhccc---CCchhHHHHHHHHHHH
Q 001859 425 IHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHA--NHGEGIKQFLRDSLRS---TNVEVIQHGACLGLGL 499 (1003)
Q Consensus 425 Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~--g~~~~al~~L~~~L~~---~~~~~vr~GA~LGLGl 499 (1003)
...|+.+++.......+... .....+..+.++..+|.++. |..+.+...+.+.+.- ..+......+...+|.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 35667666665554433211 01133445555555666553 4445666666554431 1122333345556666
Q ss_pred HhcCCCCH-HHHHHHH
Q 001859 500 AALGTADE-DIYDDIK 514 (1003)
Q Consensus 500 a~~Gs~~e-~~~e~L~ 514 (1003)
++...++- .+.+.+.
T Consensus 540 ~~~~~G~~~~A~~~~~ 555 (903)
T PRK04841 540 ILFAQGFLQAAYETQE 555 (903)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 66555543 3333333
No 176
>PRK11189 lipoprotein NlpI; Provisional
Probab=35.93 E-value=6.7e+02 Score=28.09 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhcCC--ChhhHHHHHHHHhhhhcCCCchHH-HHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHH
Q 001859 507 EDIYDDIKNVLYTD--SAVAGEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIE 583 (1003)
Q Consensus 507 e~~~e~L~~~L~~D--s~~~~e~AalALGLI~~Gs~n~~a-~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie 583 (1003)
|..+..+.++|... ++...-.+-+-+|.++...|+.+- ...++.+..-+.....-...+|..+...|+-+.+....+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45677777777321 111222345567777777666543 344443433332233344557777888898887766665
Q ss_pred HHhc-CCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc-CCChhHHHHHHHHHhhhcCCCCCChHHHHHH-HhhcCC
Q 001859 584 QMTR-DQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS-DVSDDVRRTAVLALGFVLYSEPEQTPRIVSL-LSESYN 660 (1003)
Q Consensus 584 ~L~~-~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs-d~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~-L~~s~n 660 (1003)
.... .++... +.+-+|.+|...|+.+...+.+..+.. +.++. .|..-..++. ..++++.+...++. +.....
T Consensus 123 ~Al~l~P~~~~---a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~l~~-~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 123 SVLELDPTYNY---AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-YRALWLYLAE-SKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH-ccCCHHHHHHHHHHHHhhCCc
Confidence 5543 332211 234467777778887555555554444 34333 3333333332 22344444444432 222222
Q ss_pred chhhHHHHHHHHHHhcCCCcH-HHHHHHhhhcCCChhH--HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhh-c
Q 001859 661 PHVRYGAALAVGISCAGTGLS-EAISLLEPLTSDVVDF--VRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDK-H 736 (1003)
Q Consensus 661 p~VR~gaalALGl~~aGtg~~-~aIdlL~~l~~D~dd~--Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~-~ 736 (1003)
+... .++...+.|.... .++..+.......... --..|.+-+|.+..+..+ ...-+..+.+.+.-. +
T Consensus 198 ~~~~----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-----~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 198 EQWG----WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-----LDEAAALFKLALANNVY 268 (296)
T ss_pred cccH----HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCc
Confidence 2221 2233334444432 2333222211211111 113478889998887665 333455555555322 2
Q ss_pred CChhhHHHHHHHhhhh
Q 001859 737 EDTMSKMGAILASGIL 752 (1003)
Q Consensus 737 ~d~~~rfga~lAqGLl 752 (1003)
+....|| +.+-++++
T Consensus 269 ~~~e~~~-~~~e~~~~ 283 (296)
T PRK11189 269 NFVEHRY-ALLELALL 283 (296)
T ss_pred hHHHHHH-HHHHHHHH
Confidence 2233333 34555554
No 177
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=35.68 E-value=3.5e+02 Score=31.45 Aligned_cols=145 Identities=23% Similarity=0.269 Sum_probs=77.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHhc--------CCC---hhHHHHHHHHHhh-hcCCCCCC--hHHHHHHHhh-------
Q 001859 599 YALALAYSGTANNKAIRQLLHFAVS--------DVS---DDVRRTAVLALGF-VLYSEPEQ--TPRIVSLLSE------- 657 (1003)
Q Consensus 599 ~alglAyaGTGn~~aI~~LL~~~vs--------d~~---ddvrr~Avl~LGl-I~~g~~e~--v~~ll~~L~~------- 657 (1003)
..+||=.+|..|.++-+.+++.+.. ..+ ...-+.|..-||| =.+.++.. -.++|..|.+
T Consensus 53 VllaLrL~~~~~~~~e~~ll~~Lk~~~~~~~~~s~~~~~~t~GqLALyiLAL~asC~dp~~~~~~~Lvs~Lk~~le~e~~ 132 (326)
T PF01122_consen 53 VLLALRLSGIHNLEKEQLLLQQLKEDYQQRLLSSLSSSDPTSGQLALYILALRASCRDPRFFKGHNLVSQLKRKLEEEKE 132 (326)
T ss_dssp HHHHHHTSSEE-CHHHHHHHHHHHHHHHHHHSTSSSGTC--HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeecCcccHHHHHHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHhhhccCCcccccccHHHHHHHHHHhhhh
Confidence 4456666788887777777777622 111 2345777777777 35566652 2245555532
Q ss_pred -----cCCchhh-HHHHHHHHHHhcCCCcH--HHH-HHHhhhcCC----ChhHHHHHHHHHHHHHhccccccc----cch
Q 001859 658 -----SYNPHVR-YGAALAVGISCAGTGLS--EAI-SLLEPLTSD----VVDFVRQGALIAMAMVMVQINEAN----DSR 720 (1003)
Q Consensus 658 -----s~np~VR-~gaalALGl~~aGtg~~--~aI-dlL~~l~~D----~dd~Vrq~AiiALGlI~~gt~~a~----~pk 720 (1003)
.++|+.- |.-.+++=-.|...+.. .++ +++....++ ..-.|=-+|+-.|++..+...+.. ..+
T Consensus 133 ~i~~h~g~P~TnyYq~sL~vLALCv~~~~~~~~~v~kL~~~~~~~~~~~~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~ 212 (326)
T PF01122_consen 133 NIGNHKGHPLTNYYQYSLGVLALCVHNKRVSLSVVAKLLKAENHNFYHGSQFSVDTGAMAVLALTCVKNSNPNGPELRRR 212 (326)
T ss_dssp HHTSSSTS-SSGHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSSTSS-STCHHHHHHHHHHHHHHHHTTTSTTGGGHHH
T ss_pred hcccCCCCCCCcccchHHHHHHHHccCCCcCHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHhccCcCcHhHHHH
Confidence 2245554 55556555556665432 333 588887776 334477778888888877764421 124
Q ss_pred HHHHHHHHHHHHhhhcCChhhHHH
Q 001859 721 VGTFRRQLEKIILDKHEDTMSKMG 744 (1003)
Q Consensus 721 va~~lr~L~~~~~~~~~d~~~rfg 744 (1003)
+...++.+.+.+.. .+.++..||
T Consensus 213 i~~~i~~~~~kIl~-~q~~~G~~G 235 (326)
T PF01122_consen 213 IQQAIRSLVEKILS-QQKPNGLFG 235 (326)
T ss_dssp HHHHHHHHHHHHHH-TB-TTS-BS
T ss_pred HHHHHHHHHHHHHH-hcCCCCccc
Confidence 55556665544442 333455555
No 178
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.37 E-value=4.5e+02 Score=27.14 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhhc
Q 001859 612 KAIRQLLHFAVSDVSDDVRRTAVLALGFVL 641 (1003)
Q Consensus 612 ~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~ 641 (1003)
.-++.|++++.......+...++..|..|+
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345677887766566667888888888774
No 179
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=35.12 E-value=2.2e+02 Score=28.99 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=24.2
Q ss_pred HHHHHHHhcCchhhHHHHHH-hccchHHHHHHH
Q 001859 141 RMLDKCITDGKYQQAMGIAI-ECRRLDKLEEAI 172 (1003)
Q Consensus 141 ~~~~~~~~~~~~~~Aigial-E~~rld~l~~~i 172 (1003)
+=+++++++-+|+.|+|.+| ..+.-+.+-..+
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl 55 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVL 55 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHH
Confidence 34889999999999999999 555555554444
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.46 E-value=54 Score=42.83 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=27.0
Q ss_pred cHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcc
Q 001859 680 LSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 680 ~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
...|-+-|-.+.+|+...||.+|++|||-..-+
T Consensus 640 r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 640 RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 355667777888999999999999999976553
No 181
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.31 E-value=37 Score=24.62 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHH
Q 001859 629 VRRTAVLALGFVLYSEPEQTPRIVSLL 655 (1003)
Q Consensus 629 vrr~Avl~LGlI~~g~~e~v~~ll~~L 655 (1003)
||+.|+.+||-+ ++++.++.+++.|
T Consensus 3 vR~~aa~aLg~~--~~~~a~~~L~~~l 27 (30)
T smart00567 3 VRHEAAFALGQL--GDEEAVPALIKAL 27 (30)
T ss_pred HHHHHHHHHHHc--CCHhHHHHHHHHh
Confidence 566666666644 5666555555544
No 182
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.68 E-value=1e+02 Score=37.98 Aligned_cols=123 Identities=20% Similarity=0.155 Sum_probs=77.4
Q ss_pred HHHHHHHHH-----hhhcCCCCCChHHHHHHHh----hcCCchhhHHHHHHHHHHhcCCCcHHHH------HHHhhhcCC
Q 001859 629 VRRTAVLAL-----GFVLYSEPEQTPRIVSLLS----ESYNPHVRYGAALAVGISCAGTGLSEAI------SLLEPLTSD 693 (1003)
Q Consensus 629 vrr~Avl~L-----GlI~~g~~e~v~~ll~~L~----~s~np~VR~gaalALGl~~aGtg~~~aI------dlL~~l~~D 693 (1003)
=|.+|++-| +++.-++.+++.++++.|. .+++...|.|+-++++....|-|...+. .-.-.+.+|
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D 95 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD 95 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC
Confidence 355554433 5666667777788777555 3456667778776665554444443322 234456789
Q ss_pred ChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhc
Q 001859 694 VVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 753 (1003)
Q Consensus 694 ~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~ 753 (1003)
+|.-||..|..+|=-|+-.....--+--..+-+.+-++.. +.|++++-|+-+-=+++.
T Consensus 96 ~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa--Dsd~~V~~~aeLLdRLik 153 (675)
T KOG0212|consen 96 QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA--DSDQNVRGGAELLDRLIK 153 (675)
T ss_pred ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc--CCccccccHHHHHHHHHH
Confidence 9999999998887666543333222334455666777764 577889988877766654
No 183
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=33.45 E-value=7.3e+02 Score=27.79 Aligned_cols=164 Identities=16% Similarity=0.079 Sum_probs=81.8
Q ss_pred hhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCC--CH-HHHHHHHHhhcCCChhhHHHHHHH
Q 001859 455 EGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTA--DE-DIYDDIKNVLYTDSAVAGEAAGIS 531 (1003)
Q Consensus 455 k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~--~e-~~~e~L~~~L~~Ds~~~~e~AalA 531 (1003)
+...+.++.....|..+.++..+.+.+....+...... . +++..+.|.. .. .+...+.. .....+... .+...
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~-~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~-~~~~~ 119 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK-L-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYW-YLLGM 119 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH-H-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcH-HHHHH
Confidence 33455667777777777888888877764222221111 1 3344444422 22 22222222 211111111 12223
Q ss_pred HhhhhcCCCchH-HHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcCC--ChhhHHHHHHHHHHhhcCC
Q 001859 532 MGLLMVGTASEK-AGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQ--DPILRYGGMYALALAYSGT 608 (1003)
Q Consensus 532 LGLI~~Gs~n~~-a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~~--d~i~R~~a~~alglAyaGT 608 (1003)
+|.++...|+.+ +...+..+.+...+...-...+|..+...|+-+++...++...... ++..+....+.++..|...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 455565555533 4444443322221112223334555556677777777766554432 2333333445677888899
Q ss_pred CCHHHHHHHHHHHh
Q 001859 609 ANNKAIRQLLHFAV 622 (1003)
Q Consensus 609 Gn~~aI~~LL~~~v 622 (1003)
|+.+....+++-+.
T Consensus 200 G~~~~A~~~~~~~~ 213 (355)
T cd05804 200 GDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHHHh
Confidence 99887777777654
No 184
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.31 E-value=7.1e+02 Score=27.65 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 001859 590 DPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSE 657 (1003)
Q Consensus 590 d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~ 657 (1003)
+|-+|.. +++.+. ..|+....+.|+.....+.+...|+.+..|||.. .+++...++++.+..
T Consensus 168 ~~dlr~~-v~~~~~---~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~--~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWA-VYCAGV---RNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS--PDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHH-HHHHHT---TS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT---S-HHHHHHHHHHHHC
T ss_pred chHHHHH-HHHHHH---HHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc--CCHHHHHHHHHHHcC
Confidence 4555544 454443 5577888888988888888888899999999865 888888888888876
No 185
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=33.25 E-value=2.7e+02 Score=26.42 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=6.6
Q ss_pred HHHhhcCCCCHHHH
Q 001859 601 LALAYSGTANNKAI 614 (1003)
Q Consensus 601 lglAyaGTGn~~aI 614 (1003)
+|..|...|+.+..
T Consensus 91 la~~~~~~g~~~~A 104 (135)
T TIGR02552 91 AAECLLALGEPESA 104 (135)
T ss_pred HHHHHHHcCCHHHH
Confidence 44445555554433
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.11 E-value=7.8e+02 Score=28.12 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCchhHHHHHhhcCCCC-----------------------CCCCCchH
Q 001859 46 VPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLF-----------------------DVSEDSDY 102 (1003)
Q Consensus 46 ~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~esL~yaL~ag~~f-----------------------d~~~~~eY 102 (1003)
+..+.+++-+.... .--...+++.-+|+|-|++++||+--=+++++. +..+|+|
T Consensus 92 ~~~l~E~~a~~~~~--sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide- 168 (299)
T KOG3081|consen 92 LASLYELVADSTDG--SNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE- 168 (299)
T ss_pred HHHHHHHHHhhccc--hhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHH--------------HHHhcCchhhHHHHHHhccchHHH
Q 001859 103 VHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLD--------------KCITDGKYQQAMGIAIECRRLDKL 168 (1003)
Q Consensus 103 v~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~~--------------~~~~~~~~~~AigialE~~rld~l 168 (1003)
+.++.+....|++.-+. ++.+ .+--=|.++|=+ -||.-+.|.+|-+ .|
T Consensus 169 -d~tLtQLA~awv~la~g-------gek~-qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~---------lL 230 (299)
T KOG3081|consen 169 -DATLTQLAQAWVKLATG-------GEKI-QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES---------LL 230 (299)
T ss_pred -HHHHHHHHHHHHHHhcc-------chhh-hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH---------HH
Q ss_pred HHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 001859 169 EEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLL 242 (1003)
Q Consensus 169 ~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Lnd~~~v~~il~~L~ 242 (1003)
+..+++..+++..+.=++.++.-.=.+.+--.+.+.-+...+.+++ +..+.+....=|++++
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~------------~vk~~~ekeaeFDrl~ 292 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP------------FVKHLNEKEAEFDRLV 292 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch------------HHHHHHHHHHHHHHHH
No 187
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.79 E-value=3.2e+02 Score=33.36 Aligned_cols=105 Identities=23% Similarity=0.309 Sum_probs=65.7
Q ss_pred cCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-HHhhhcCCChhHHHHH
Q 001859 623 SDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLTSDVVDFVRQG 701 (1003)
Q Consensus 623 sd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-lL~~l~~D~dd~Vrq~ 701 (1003)
.|.+..+|+.|.=+||+++.+-|..+......+ ++ ++..+-+|.+..|.--
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~----------------------------ldaii~gL~D~~~~~V~le 319 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ----------------------------LDAIIRGLYDDLNEEVQLE 319 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH----------------------------HHHHHHHHhcCCccHHHHH
Confidence 467778999999999999888665543332221 22 3334445556778888
Q ss_pred HHHHHHHHhcc-ccccccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhc--cCCC
Q 001859 702 ALIAMAMVMVQ-INEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD--AGGR 757 (1003)
Q Consensus 702 AiiALGlI~~g-t~~a~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~--aGg~ 757 (1003)
|+.+|.+|.-. ++....|....+--+++.+. ..+++..|..+....|.+. +||+
T Consensus 320 am~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~--~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 320 AMKCLTMVLEKASNDDLESYLLNIALRLRTLF--DSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHHHHHHHHhhhhcchhhhchhHHHHHHHHH--HhcChhhhhhHHHHHHHHHHHcCCC
Confidence 88888887533 22222222222223344444 4688889999999999876 5543
No 188
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.77 E-value=4.9e+02 Score=25.62 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhcCCCchHHH-HHHHHhhhc-CchhHHHHHHHHHhHhcc--CChhhHHHHHHHHhcCCChhhHHHHHHHH
Q 001859 526 EAAGISMGLLMVGTASEKAG-EMLTYAHET-QHEKIIRGLALGIALTVY--GREEEADTLIEQMTRDQDPILRYGGMYAL 601 (1003)
Q Consensus 526 e~AalALGLI~~Gs~n~~a~-~LL~~~~et-~~e~i~r~~algLgLl~~--G~~e~ad~lie~L~~~~d~i~R~~a~~al 601 (1003)
..|.+.++-+++..++-+-. ..+..+.+. .++.+...+-+.||.+.+ |+-+.+-.+++. ..++..+.......
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---~~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ---IPDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---ccCcchHHHHHHHH
Confidence 34666666666666655443 555543333 244444444455555543 333444444433 22233333444556
Q ss_pred HHhhcCCCCHHHHHH
Q 001859 602 ALAYSGTANNKAIRQ 616 (1003)
Q Consensus 602 glAyaGTGn~~aI~~ 616 (1003)
|-+|..-|+......
T Consensus 125 Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 125 GDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHCCCHHHHHH
Confidence 666767776544443
No 189
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=31.84 E-value=1.1e+02 Score=31.27 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCC---------CChHHHHHHHhh--cCCchhhHHHHHHHHHHhcCCCc-
Q 001859 613 AIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSE--SYNPHVRYGAALAVGISCAGTGL- 680 (1003)
Q Consensus 613 aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~---------e~v~~ll~~L~~--s~np~VR~gaalALGl~~aGtg~- 680 (1003)
.+...++..+.+.+.|-...++-.+..++.+-| +.+...+-.+.. ..++.+-..+.-++..+|.-..-
T Consensus 43 ~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r 122 (157)
T PF11701_consen 43 KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR 122 (157)
T ss_dssp HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH
Confidence 344444444443333333344444444444433 233344444445 77888888888888887765433
Q ss_pred ----HHHHHHHhhhcC-CChhH-HHHHHHHHHHH
Q 001859 681 ----SEAISLLEPLTS-DVVDF-VRQGALIAMAM 708 (1003)
Q Consensus 681 ----~~aIdlL~~l~~-D~dd~-Vrq~AiiALGl 708 (1003)
..-++.|+.+.+ .+++. ||--|.++|..
T Consensus 123 ~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 123 TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 333458888885 55555 78888866653
No 190
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.71 E-value=3.6e+02 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-cHHHHH-HHhhhcCCChhHHH-HHHHHHHHHHhccc
Q 001859 649 PRIVSLLSESYNPHVRYGAALAVGISCAGTG-LSEAIS-LLEPLTSDVVDFVR-QGALIAMAMVMVQI 713 (1003)
Q Consensus 649 ~~ll~~L~~s~np~VR~gaalALGl~~aGtg-~~~aId-lL~~l~~D~dd~Vr-q~AiiALGlI~~gt 713 (1003)
|-+...|..+..+..|.|+=+.++..+.-.+ +.++++ +++.+.++....-. +.+++.|..+..++
T Consensus 9 P~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 9 PFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4444555557788999999999988876665 677777 77777776554433 67888999888777
No 191
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=31.62 E-value=4.4e+02 Score=24.96 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=5.5
Q ss_pred HHhHhccCChhhHH
Q 001859 566 GIALTVYGREEEAD 579 (1003)
Q Consensus 566 gLgLl~~G~~e~ad 579 (1003)
|..+...|+.+.+.
T Consensus 92 a~~~~~~g~~~~A~ 105 (135)
T TIGR02552 92 AECLLALGEPESAL 105 (135)
T ss_pred HHHHHHcCCHHHHH
Confidence 33333444444333
No 192
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=31.60 E-value=52 Score=32.63 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcH
Q 001859 602 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS 681 (1003)
Q Consensus 602 glAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~ 681 (1003)
...-..-.|.+.++.|++++.+..++.+...|+--||.. .+.+ |..|.-+ --+|
T Consensus 33 Na~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~---------------vr~~-p~gr~ii-~~lg--------- 86 (119)
T PF11698_consen 33 NADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEF---------------VRHY-PNGRNII-EKLG--------- 86 (119)
T ss_dssp HSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHH---------------HHH--GGGHHHH-HHHS---------
T ss_pred HHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHH---------------HHHC-hhHHHHH-HhcC---------
Confidence 333345567788888888873322222333333333332 2222 4433322 1122
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHHhcc
Q 001859 682 EAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 682 ~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
+-+.+-.+++++|++||..|+.++..++.+
T Consensus 87 -~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 87 -AKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp -HHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 223445556679999999999999987753
No 193
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.31 E-value=1e+03 Score=31.21 Aligned_cols=62 Identities=21% Similarity=0.133 Sum_probs=34.6
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcH----------HHHH-HHhhhcCCChhHHHHHHHHHHHHH
Q 001859 648 TPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS----------EAIS-LLEPLTSDVVDFVRQGALIAMAMV 709 (1003)
Q Consensus 648 v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~----------~aId-lL~~l~~D~dd~Vrq~AiiALGlI 709 (1003)
+-.++.....++.+.|||+|+-.+...--|||.. +... +++..-.+++|.+|.-|-..+=.+
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3345555556667777777777776666666621 1122 233333466666776666555443
No 194
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=31.25 E-value=6.5e+02 Score=26.58 Aligned_cols=7 Identities=14% Similarity=-0.197 Sum_probs=2.6
Q ss_pred hhcCCCC
Q 001859 604 AYSGTAN 610 (1003)
Q Consensus 604 AyaGTGn 610 (1003)
++...|+
T Consensus 153 ~~~~~g~ 159 (198)
T PRK10370 153 DAFMQAD 159 (198)
T ss_pred HHHHcCC
Confidence 3333333
No 195
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.12 E-value=4.2e+02 Score=33.75 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhh-----hHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHH-ccccCCchhHHHHHhhcCCCCCCCCCc
Q 001859 28 LSNLNSFVDQFW-----PEISTSVPIIESLYEDEEFDQHQRQLAALLVSKV-FYYLGELNDSLSYALGAGSLFDVSEDS 100 (1003)
Q Consensus 28 L~~L~~~v~~~w-----~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skv-y~~lge~~esL~yaL~ag~~fd~~~~~ 100 (1003)
=..||.+||+.- ..--|++..+-+++.|.+- -++++- -.+|++ -+++.+..+-++|-+.+...|-+..|.
T Consensus 28 s~~ln~iid~l~v~~q~~~~~d~le~l~~lc~~f~~--l~~~l~-~~is~L~ts~vs~~s~d~~~~vS~n~nftipQ~n 103 (1128)
T COG5098 28 SRELNVIIDQLAVSEQIDASPDSLEALIDLCHDFPH--LQKELE-ILISKLKTSTVSDNSEDYNYLVSHNVNFTIPQCN 103 (1128)
T ss_pred hHHHHHHHHHHHhhccccCChHHHHHHHHHHhcchh--hCHHHH-HHHHHHHHhhccchhHHHHHHHhcCCCCCCcccc
Confidence 456888888874 1133556677777766432 234444 333443 556777778899999988788888884
No 196
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=30.74 E-value=77 Score=30.98 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=36.4
Q ss_pred HHhhccCC--ChhHHHHHHHHHHHHHHhhhh---Hhhhc-------HHHHHHHhcccCCCHHHHHHHHHHHHHHc
Q 001859 12 LLAMLNES--HPSLKLHALSNLNSFVDQFWP---EISTS-------VPIIESLYEDEEFDQHQRQLAALLVSKVF 74 (1003)
Q Consensus 12 ~l~lL~e~--d~~l~~~AL~~L~~~v~~~w~---ei~~~-------~~~ie~lye~~~f~~~~r~laA~v~Skvy 74 (1003)
+++.|.++ |++-...||+.+.++||+.-. |+.++ +-.|+.-|+...|. ..++.|+|+=.|.
T Consensus 8 ll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe--~~R~~alval~v~ 80 (114)
T PF10193_consen 8 LLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFE--ELRQNALVALVVA 80 (114)
T ss_dssp HHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTT--HHHHHHHHHHHHH
T ss_pred HHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHH--HHHHHHHHHHHHH
Confidence 56666644 589999999999999998765 55554 44456667888898 8888878866553
No 197
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.21 E-value=1.9e+02 Score=26.32 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCc-HHHHHHHhhhcC-CChhHHHHHHHHHHHHHhcccc
Q 001859 667 AALAVGISCAGTGL-SEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQIN 714 (1003)
Q Consensus 667 aalALGl~~aGtg~-~~aIdlL~~l~~-D~dd~Vrq~AiiALGlI~~gt~ 714 (1003)
+-+-+|.++...|+ ..|++.++.+.. +|+......+...+|.+..+.+
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 90 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELG 90 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhC
Confidence 34556666666666 446777766553 5543333344555666655443
No 198
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=29.06 E-value=67 Score=32.63 Aligned_cols=44 Identities=30% Similarity=0.558 Sum_probs=37.8
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHHHhhh--hHhhhcHHHHHHHhcccCCC
Q 001859 11 GLLAMLNESHPSLKLHALSNLNSFVDQFW--PEISTSVPIIESLYEDEEFD 59 (1003)
Q Consensus 11 ~~l~lL~e~d~~l~~~AL~~L~~~v~~~w--~ei~~~~~~ie~lye~~~f~ 59 (1003)
-++.+|..+|+++|+.||+-|-. | +.|.++=+.|+.|-+|.+|.
T Consensus 21 ~~~~LL~~~d~~vQklAL~cll~-----~k~~~l~pY~d~L~~Lldd~~fr 66 (141)
T PF07539_consen 21 ALLRLLSSRDPEVQKLALDCLLT-----WKDPYLTPYKDNLENLLDDKTFR 66 (141)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-----hCcHHHHhHHHHHHHHcCcchHH
Confidence 37899999999999999999887 7 45888888899999888765
No 199
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.56 E-value=2.2e+02 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccc
Q 001859 681 SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINE 715 (1003)
Q Consensus 681 ~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~ 715 (1003)
+.+++++....+|+|+||=-+||-+++-.+-..++
T Consensus 42 ~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 42 PKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 45556777888999999999999998887764443
No 200
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.26 E-value=1.4e+03 Score=29.59 Aligned_cols=263 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHhcCCC-CHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCc-------hHHH-HHHHHhhhcCc
Q 001859 486 VEVIQHGACLGLGLAALGTA-DEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS-------EKAG-EMLTYAHETQH 556 (1003)
Q Consensus 486 ~~~vr~GA~LGLGla~~Gs~-~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n-------~~a~-~LL~~~~et~~ 556 (1003)
+...-.|+||.|-.-++|-. =+.++..+.+.+.+++--.+++|++|.|.|+-|..- .++. .++..+. +..
T Consensus 341 np~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~s 419 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPS 419 (859)
T ss_pred cHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cch
Q ss_pred hhHHHHHHHHHhHhccCChhhHH----------HHHHHHhcCC---ChhhHHHHHHHHHHhhcCCCC----------HHH
Q 001859 557 EKIIRGLALGIALTVYGREEEAD----------TLIEQMTRDQ---DPILRYGGMYALALAYSGTAN----------NKA 613 (1003)
Q Consensus 557 e~i~r~~algLgLl~~G~~e~ad----------~lie~L~~~~---d~i~R~~a~~alglAyaGTGn----------~~a 613 (1003)
--+++-.+-.+|-++=+-.+.+. .+++.|...+ ....+..--++.++..++..| ...
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Q ss_pred HHHHHHHHhc-C-CChhHHHHHHHHHhhhcCCCCCChHHHHHHHh----------------------hcCCchhhHHHHH
Q 001859 614 IRQLLHFAVS-D-VSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS----------------------ESYNPHVRYGAAL 669 (1003)
Q Consensus 614 I~~LL~~~vs-d-~~ddvrr~Avl~LGlI~~g~~e~v~~ll~~L~----------------------~s~np~VR~gaal 669 (1003)
|..||+..-- | .....|.+|--+|+-+--..+..|-.++..+. +..+----....+
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL 579 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcCCCcHHHHH-----HHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhhhcCChhhHHH
Q 001859 670 AVGISCAGTGLSEAIS-----LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMG 744 (1003)
Q Consensus 670 ALGl~~aGtg~~~aId-----lL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d~~~rfg 744 (1003)
..-+.=.|+--.+..| +|..+-+-....|.--|+.|++-...--... .++....|..|+..--++-.-.+.
T Consensus 580 q~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~----F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 580 QSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKG----FAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHh----HHHHHHHHHHHHHHHhhcchHHHH
Q ss_pred HHHHhhhhc
Q 001859 745 AILASGILD 753 (1003)
Q Consensus 745 a~lAqGLl~ 753 (1003)
...|.|++.
T Consensus 656 c~~aVglVg 664 (859)
T KOG1241|consen 656 CAAAVGLVG 664 (859)
T ss_pred HHHHHHHHH
No 201
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=28.23 E-value=1.1e+03 Score=28.04 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=41.8
Q ss_pred ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-------HHhhhcCCChhHHHHHHHHHHHHHhccccc
Q 001859 647 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-------LLEPLTSDVVDFVRQGALIAMAMVMVQINE 715 (1003)
Q Consensus 647 ~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-------lL~~l~~D~dd~Vrq~AiiALGlI~~gt~~ 715 (1003)
.+|.+++......+. +|..--.||+.+....|..-.+. +|-...+-++..|+.+++-.|-.+....+.
T Consensus 324 ~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 324 VLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 455666655444433 55555666666666666543332 333344556667999999999988876543
No 202
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=28.17 E-value=70 Score=24.84 Aligned_cols=27 Identities=41% Similarity=0.517 Sum_probs=17.3
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 001859 648 TPRIVSLLSESYNPHVRYGAALAVGISC 675 (1003)
Q Consensus 648 v~~ll~~L~~s~np~VR~gaalALGl~~ 675 (1003)
++.++++|. +.|+.||..++.||+-++
T Consensus 14 i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 356666553 677777777777776554
No 203
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.13 E-value=7e+02 Score=32.02 Aligned_cols=119 Identities=14% Similarity=-0.005 Sum_probs=66.4
Q ss_pred hhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCch
Q 001859 463 GLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE 542 (1003)
Q Consensus 463 GLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~ 542 (1003)
-....|..+++..+|...+.-. -..+..-.-++..+.-.+. -+++.......|..+......--.+|+-|..+|.. +
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS-E 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch-H
Confidence 3445556688999888877642 2344444445555554443 35777777777754332222223344445566754 5
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHH
Q 001859 543 KAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQ 584 (1003)
Q Consensus 543 ~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~ 584 (1003)
++.+++.-+.....+.-.-...+|..|.-.|+.+++.+..+.
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666644432223233344567777778988777666653
No 204
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.01 E-value=2.6e+02 Score=35.63 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccchHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcC---
Q 001859 137 AIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKL--- 213 (1003)
Q Consensus 137 ~iv~~~~~~~~~~~~~~~AigialE~~rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~--- 213 (1003)
-+|+.||+|+++-|. .+|+.|++=+++= ....+|.=+ ..++..+.+|...|.++-.+.++.
T Consensus 39 ~l~~~l~~y~~~t~s-~~~~~il~~~~~P-----------~~K~~~~~l----~~~~~~~~~Rl~~L~Ll~~~v~~qp~~ 102 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNS-QRALEILVGVQEP-----------HDKHLFDKL----NDYFVKPSYRLQALTLLGHFVRSQPPW 102 (668)
T ss_pred HHHHHHHHHHhhcCc-HHHHHHHHhcCCc-----------cHHHHHHHH----HHHHcCchhHHHHHHHHHHHHhcCCch
Confidence 679999999999998 7889998876664 212222111 112234567888888888777764
Q ss_pred -----CCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 001859 214 -----PSPDYLSICQCLMFLDEPEGVVSILEKLL 242 (1003)
Q Consensus 214 -----~~~dy~~~~~~~i~Lnd~~~v~~il~~L~ 242 (1003)
+.|=|-++++|+.+=.+.--+.-.+.-|+
T Consensus 103 l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Li 136 (668)
T PF04388_consen 103 LYKILQTPLFKSLLKCLQFDTSITVVSSALLVLI 136 (668)
T ss_pred HHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34667788888877766666655555543
No 205
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.92 E-value=2e+03 Score=31.27 Aligned_cols=156 Identities=23% Similarity=0.256 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHhHh--ccCCh----hhHHHHHHHHhcCCChhhHHHHHHHHHHhh--cCCCC-----HHHHHHHHHHHh
Q 001859 556 HEKIIRGLALGIALT--VYGRE----EEADTLIEQMTRDQDPILRYGGMYALALAY--SGTAN-----NKAIRQLLHFAV 622 (1003)
Q Consensus 556 ~e~i~r~~algLgLl--~~G~~----e~ad~lie~L~~~~d~i~R~~a~~alglAy--aGTGn-----~~aI~~LL~~~v 622 (1003)
+.+.+..++-++|-+ ++|++ +.++..++.|...+||+.|-+-.+++||.+ .|.+- ...++.|+....
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~ 968 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT 968 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh
Confidence 455555555666655 45554 567889999999999999999999999974 44432 255677777655
Q ss_pred cCCChhHHHHHHHHHhhhcCCCCCCh----HHHHHHHhh--cCCchhhHHHHHHHHHHhcCCCcHHHH-HHHhhh-----
Q 001859 623 SDVSDDVRRTAVLALGFVLYSEPEQT----PRIVSLLSE--SYNPHVRYGAALAVGISCAGTGLSEAI-SLLEPL----- 690 (1003)
Q Consensus 623 sd~~ddvrr~Avl~LGlI~~g~~e~v----~~ll~~L~~--s~np~VR~gaalALGl~~aGtg~~~aI-dlL~~l----- 690 (1003)
+...+.|++.+..++++|.-..--|. .+.+.++.. -..|+.+.-+--++|-..-|.-+..++ ..+-+=
T Consensus 969 Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~ 1048 (2067)
T KOG1822|consen 969 DSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNG 1048 (2067)
T ss_pred cCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCC
Confidence 44455999999999998876543222 222222111 123444444444444443332222222 233332
Q ss_pred cCCChhHHHHHHHHHHHHHhc
Q 001859 691 TSDVVDFVRQGALIAMAMVMV 711 (1003)
Q Consensus 691 ~~D~dd~Vrq~AiiALGlI~~ 711 (1003)
.+|...-+|..-..+.++...
T Consensus 1049 ~~d~t~~~rts~la~~allls 1069 (2067)
T KOG1822|consen 1049 DKDSTSTLRTSCLAACALLLS 1069 (2067)
T ss_pred cccchhHHHHHHHHHHHHhcC
Confidence 234555666666666665543
No 206
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.73 E-value=72 Score=32.56 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=33.2
Q ss_pred HhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCchhHHHHH
Q 001859 41 EISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYA 87 (1003)
Q Consensus 41 ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~esL~ya 87 (1003)
++..-|.-+|++|++.+ |.+.|+-. --+.+=+|.+++|+.|++|.
T Consensus 50 dv~~GI~iLe~l~~~~~-~~~rRe~l-yYLAvg~yRlkeY~~s~~yv 94 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAH-PERRRECL-YYLAVGHYRLKEYSKSLRYV 94 (149)
T ss_pred HHHHhHHHHHHHhhhcC-cccchhhh-hhhHHHHHHHhhHHHHHHHH
Confidence 35666899999998444 43455555 55557788999999999985
No 207
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.69 E-value=1e+03 Score=27.79 Aligned_cols=247 Identities=12% Similarity=0.033 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcCCCCHH-HHHHHHHhhcC-CCh-hhHHHHHHHHhhhhcCCCchHHH-HHHHHhhh-cCchhHHHHHH
Q 001859 490 QHGACLGLGLAALGTADED-IYDDIKNVLYT-DSA-VAGEAAGISMGLLMVGTASEKAG-EMLTYAHE-TQHEKIIRGLA 564 (1003)
Q Consensus 490 r~GA~LGLGla~~Gs~~e~-~~e~L~~~L~~-Ds~-~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~e-t~~e~i~r~~a 564 (1003)
+.-..+--|+..++.+|-+ +...+...-.. +.+ .....|+.+ -...|+.+.. ..+..+.+ +.+..+...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~a----A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~ 158 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEA----AQQRGDEARANQHLERAAELADNDQLPVEIT 158 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHH----HHHCCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3344567777777777654 33333322111 112 111122222 2334555544 55554444 33333333222
Q ss_pred HHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCC--Chh----HHHHHHHHHh
Q 001859 565 LGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV--SDD----VRRTAVLALG 638 (1003)
Q Consensus 565 lgLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~--~dd----vrr~Avl~LG 638 (1003)
.+--.+..|+.+.+...++.+.... |-.. .+...++-+|...|+-+...++|..+.... +++ .++.+-+++.
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~-~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVA-PRHP-EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 2333345688888888888776543 2111 223345678889999998888888876532 222 2223333332
Q ss_pred hhcCCCC--CChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhcccccc
Q 001859 639 FVLYSEP--EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 716 (1003)
Q Consensus 639 lI~~g~~--e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a 716 (1003)
-...++. +...+..+.+..........-.++|-..+-.| -...|..+|....+.+.+. ..+...+-+..+.
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g-~~~~A~~~L~~~l~~~~~~---~l~~l~~~l~~~~--- 309 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD-DHDTAQQIILDGLKRQYDE---RLVLLIPRLKTNN--- 309 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCH---HHHHHHhhccCCC---
Confidence 2222222 23334344443333223444455555555444 3456666666666533322 2223344443332
Q ss_pred ccchHHHHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCC
Q 001859 717 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 757 (1003)
Q Consensus 717 ~~pkva~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~ 757 (1003)
....++.+.+....+-+|+. ..+++|-++...+
T Consensus 310 ----~~~al~~~e~~lk~~P~~~~----l~l~lgrl~~~~~ 342 (398)
T PRK10747 310 ----PEQLEKVLRQQIKQHGDTPL----LWSTLGQLLMKHG 342 (398)
T ss_pred ----hHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCC
Confidence 22335555555544444454 3445555554443
No 208
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.64 E-value=1.5e+03 Score=29.55 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC---ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcH-HHHH-
Q 001859 611 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE---QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS-EAIS- 685 (1003)
Q Consensus 611 ~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e---~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~-~aId- 685 (1003)
..-..++|+-|..+..+-|.--|+.++-.+....+. -+...++.+..+.++..|+++...|--+..--|.. .+-+
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~ 322 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNL 322 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccch
Confidence 345556677777666666655555555444333332 24456677778888999999988886653322221 1112
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHhh
Q 001859 686 LLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILD 734 (1003)
Q Consensus 686 lL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva~~lr~L~~~~~~ 734 (1003)
-|+.+.+|++-.+.. +|+...+...++.. +-.+.++...+++|
T Consensus 323 elE~lItd~NrsIat---~AITtLLKTG~e~s---v~rLm~qI~~fv~d 365 (865)
T KOG1078|consen 323 DLESLITDSNRSIAT---LAITTLLKTGTESS---VDRLMKQISSFVSD 365 (865)
T ss_pred hHHhhhcccccchhH---HHHHHHHHhcchhH---HHHHHHHHHHHHHh
Confidence 488888888855544 44444443333333 66677777766653
No 209
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=26.62 E-value=3.9e+02 Score=24.28 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=39.6
Q ss_pred cchHhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhcCCCh-hhHHHHHHHHhhhhcCCCchH
Q 001859 468 NHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKNVLYTDSA-VAGEAAGISMGLLMVGTASEK 543 (1003)
Q Consensus 468 g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~-e~~~e~L~~~L~~Ds~-~~~e~AalALGLI~~Gs~n~~ 543 (1003)
|..+.++..+...+....+.....-+.+.+|.++...++ +.+...+...+..+.. .....+.+.+|.++...++.+
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence 334567777766665322222223455667777777666 3566666666532211 111234556666666655543
No 210
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.47 E-value=4.5e+02 Score=34.27 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=49.5
Q ss_pred ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCC----cHHHH----HHHhhhcCCChhHHHHHHHHHHHHHhccc
Q 001859 647 QTPRIVSLLSESYNPHVRYGAALAVGISCAGTG----LSEAI----SLLEPLTSDVVDFVRQGALIAMAMVMVQI 713 (1003)
Q Consensus 647 ~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg----~~~aI----dlL~~l~~D~dd~Vrq~AiiALGlI~~gt 713 (1003)
..-+.+...+...||-+|-.....++.....++ -...+ ..+-...+|.+.+||-+|.-++|-|.--.
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 334445555688999999999999988877776 22333 35666778999999999999988776533
No 211
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=26.32 E-value=9.8e+02 Score=27.05 Aligned_cols=17 Identities=18% Similarity=0.306 Sum_probs=8.4
Q ss_pred ccCChhhHHHHHHHHhc
Q 001859 571 VYGREEEADTLIEQMTR 587 (1003)
Q Consensus 571 ~~G~~e~ad~lie~L~~ 587 (1003)
-++|.+.|...++.+..
T Consensus 143 ~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HTT-HHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 35555555555555543
No 212
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms]
Probab=25.91 E-value=1.6e+03 Score=31.32 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=108.2
Q ss_pred cCCChhHHHHHHHHHHHHHHhhhhH---------hhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCchhHH---
Q 001859 17 NESHPSLKLHALSNLNSFVDQFWPE---------ISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDSL--- 84 (1003)
Q Consensus 17 ~e~d~~l~~~AL~~L~~~v~~~w~e---------i~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~esL--- 84 (1003)
.+..+.|..-++.-+...++..|.+ ++..+.++-.+...+. -++++...+.+- |+++-+.+-
T Consensus 901 ~~~~~~l~~~~~~~~~~ll~~~~se~~l~h~fA~~r~~~~kfp~l~fe~~-----~~~c~~~~~q~l-~c~ss~~~~r~~ 974 (1518)
T KOG1997|consen 901 CDANDSLLGKALRILLNLLKSHQSETVLDHVFATLRLFALKFPDLLFEMD-----PEQCAHMLHQVL-HCESSRLATRQK 974 (1518)
T ss_pred cCccHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhHHHHHcCC-----hHHHHHHHHHHh-hhhhhhHHHHHH
Confidence 6778889999999999999999976 3333444444443332 367778888777 887654332
Q ss_pred HHHhhcCCCCCCCCC-chHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHH------HHHHhcCchhhHHH
Q 001859 85 SYALGAGSLFDVSED-SDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERML------DKCITDGKYQQAMG 157 (1003)
Q Consensus 85 ~yaL~ag~~fd~~~~-~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~------~~~~~~~~~~~Aig 157 (1003)
.|.-+++ .. + .+.+++.+...=.... ....++.+.+..+. +..-.-.--.+.-|
T Consensus 975 ~~~~~~~------~~~~--~q~~~~~~~~~~~~~~-----------~~~s~~~~~~~~l~~~~~~~~~~~~~~f~~~v~d 1035 (1518)
T KOG1997|consen 975 RNNFEAT------SRTL--LQSTISVAAAEAKSVN-----------SLRSRLLESLRLLLAPEKEDDNRKATAFPEQVKD 1035 (1518)
T ss_pred HHhcccc------hhhh--hhhhhhHHHHHhhhcc-----------hHHHhhHHHHhhhcCchhhcchhhhcchHHHHHH
Confidence 2333332 11 1 2222333322211100 00012222211111 11111111222223
Q ss_pred HHHhccchHHHHHHHh----ccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHH
Q 001859 158 IAIECRRLDKLEEAIT----RSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEG 233 (1003)
Q Consensus 158 ialE~~rld~l~~~i~----~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Lnd~~~ 233 (1003)
+.-- |+.+.-..- -..+...+..-.+..++.+...++.|..=|..+.+++.+.. +|..+.+|+++. ...
T Consensus 1036 l~~~---l~~~l~~t~~mk~h~~d~~~~~dl~y~l~~~y~~~p~Lr~twl~~ma~~h~~~~--~~~eaa~c~~~~--aal 1108 (1518)
T KOG1997|consen 1036 LLRN---LRTVLMATVQMKEHAMDPEMLADLMYQLAKSYANSPDLRITWLLSMAEIHEKNG--NFAEAAQCYVHA--AAL 1108 (1518)
T ss_pred HHHH---HHHHHHHHHhHHHhhhCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhcc--cHHHHHHHHHHH--HHH
Confidence 3221 332221111 02566666666778899999999999999999999999988 999999999885 355
Q ss_pred HHHHHHH
Q 001859 234 VVSILEK 240 (1003)
Q Consensus 234 v~~il~~ 240 (1003)
|++.|..
T Consensus 1109 i~e~l~~ 1115 (1518)
T KOG1997|consen 1109 IAEYLAR 1115 (1518)
T ss_pred HHHHHHH
Confidence 5555555
No 213
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=25.86 E-value=1e+03 Score=26.98 Aligned_cols=157 Identities=16% Similarity=0.076 Sum_probs=66.7
Q ss_pred HHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHH
Q 001859 418 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGL 497 (1003)
Q Consensus 418 AtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGL 497 (1003)
..++.-.++.|+.++++..+.++ ...+.-++..--++..+..|-|...+.++-+-..+..+..=|--=+
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv 174 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 34444567889999998776543 1234445544444555555666666665544323332222221113
Q ss_pred HHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCch-HHHHHHHHhhhcCchhHHHHHHHHHhHhccCCh-
Q 001859 498 GLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASE-KAGEMLTYAHETQHEKIIRGLALGIALTVYGRE- 575 (1003)
Q Consensus 498 Gla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~-~a~~LL~~~~et~~e~i~r~~algLgLl~~G~~- 575 (1003)
+++--|-.-.+++-...++-......+.. ..|++..+++.++- ++..+|.-+.+.+....--.+.+...-...|+.
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~~~~t~~~--lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDKFGSTPKL--LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCCS--SHHH--HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHhCchhHHHHHHHHHHHHhccCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 33322211123333333322111111111 22333334444443 333555433322211111122233333456655
Q ss_pred hhHHHHHHHHhc
Q 001859 576 EEADTLIEQMTR 587 (1003)
Q Consensus 576 e~ad~lie~L~~ 587 (1003)
+.++..+..|..
T Consensus 253 ~~~~~~l~qL~~ 264 (290)
T PF04733_consen 253 EAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCHH
T ss_pred hHHHHHHHHHHH
Confidence 566777776663
No 214
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=25.38 E-value=6.3e+02 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHhc-CChHHHHHHHHH
Q 001859 202 VLRLLVKVYQKLPSPDYLSICQCLMFL-DEPEGVVSILEK 240 (1003)
Q Consensus 202 vL~~l~~iy~~~~~~dy~~~~~~~i~L-nd~~~v~~il~~ 240 (1003)
..+.++-+|.+++ +|-.++++++.- +|++.+.+.+.+
T Consensus 84 l~~~~~~l~~k~~--~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDG--NFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhc--CHHHHHHHHHHcccCHHHHHHHHHh
Confidence 5566777888877 888888898875 888888887777
No 215
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=4.5e+02 Score=33.82 Aligned_cols=285 Identities=19% Similarity=0.147 Sum_probs=131.8
Q ss_pred HHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHh----hcCCChhhHHHHHHHHhhhhcCCCc--hHHHHHHH
Q 001859 476 FLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNV----LYTDSAVAGEAAGISMGLLMVGTAS--EKAGEMLT 549 (1003)
Q Consensus 476 ~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~----L~~Ds~~~~e~AalALGLI~~Gs~n--~~a~~LL~ 549 (1003)
..++-|..+ ++++|...+--|- .-...++++.|.|. |....+.+|.-|.+|++.||--... +++-+|+.
T Consensus 103 a~RkDLQHP-NEyiRG~TLRFLc----kLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~ 177 (948)
T KOG1058|consen 103 AYRKDLQHP-NEYIRGSTLRFLC----KLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE 177 (948)
T ss_pred HHhhhccCc-hHhhcchhhhhhh----hcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH
Confidence 344556664 4788754444442 22345667766665 4456788899999999999976322 33447776
Q ss_pred Hhhhc-CchhHHHHHHHHHhHhccCChhhH-HHHHHHHhcCCChhhHHHHHHHHHHhh--cCCCCH---HHHHHHHHHHh
Q 001859 550 YAHET-QHEKIIRGLALGIALTVYGREEEA-DTLIEQMTRDQDPILRYGGMYALALAY--SGTANN---KAIRQLLHFAV 622 (1003)
Q Consensus 550 ~~~et-~~e~i~r~~algLgLl~~G~~e~a-d~lie~L~~~~d~i~R~~a~~alglAy--aGTGn~---~aI~~LL~~~v 622 (1003)
-...+ ++....|.+-+.|-.+ .+|.| +-+.......++ +.-.......-+.| |-+... .-|+-++..+.
T Consensus 178 ~fL~~e~DpsCkRNAFi~L~~~---D~ErAl~Yl~~~idqi~~-~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 178 SFLLTEQDPSCKRNAFLMLFTT---DPERALNYLLSNIDQIPS-FNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLS 253 (948)
T ss_pred HHHHhccCchhHHHHHHHHHhc---CHHHHHHHHHhhHhhccC-ccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHh
Confidence 33333 4667777776665433 33333 333332222211 00001111111111 000000 11222222222
Q ss_pred cCCChhHHHHHHHHHhhhcCC-CCC----ChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHH-----HHhhhcC
Q 001859 623 SDVSDDVRRTAVLALGFVLYS-EPE----QTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-----LLEPLTS 692 (1003)
Q Consensus 623 sd~~ddvrr~Avl~LGlI~~g-~~e----~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aId-----lL~~l~~ 692 (1003)
+. ++.|+--|+.+| +.+. +|+ ++.++++++..-.|-.++.-+-.=|.-.. .++..+++ .|..+ +
T Consensus 254 st-ssaV~fEaa~tl--v~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvL-s 327 (948)
T KOG1058|consen 254 ST-SSAVIFEAAGTL--VTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVL-S 327 (948)
T ss_pred cC-CchhhhhhcceE--EEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHc-C
Confidence 22 333443333333 2222 232 23445555544444444444433333332 23444433 33333 4
Q ss_pred CChhHHHHHHH-HHHHHHhccccccccchHHHHHHHHHHHHhhhcCC---hhhHHHHHHHhhhhccCCCc--e--E-EEe
Q 001859 693 DVVDFVRQGAL-IAMAMVMVQINEANDSRVGTFRRQLEKIILDKHED---TMSKMGAILASGILDAGGRN--V--T-IRL 763 (1003)
Q Consensus 693 D~dd~Vrq~Ai-iALGlI~~gt~~a~~pkva~~lr~L~~~~~~~~~d---~~~rfga~lAqGLl~aGg~n--~--t-isl 763 (1003)
-||-+||.-++ |+|.++-. || +.++...|.+=+.+.|+. ...+|..-+-.-|-.+.-.= + + +++
T Consensus 328 s~dldvr~Ktldi~ldLvss-----rN--vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ 400 (948)
T KOG1058|consen 328 SPDLDVRSKTLDIALDLVSS-----RN--VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSL 400 (948)
T ss_pred cccccHHHHHHHHHHhhhhh-----cc--HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 56767777655 67776654 32 556666666555444433 45566666655553321100 0 0 111
Q ss_pred -ccCCCCCchhHHHHHHHHH
Q 001859 764 -LSKTKHDKITAVVGLSVFS 782 (1003)
Q Consensus 764 -~s~~~~~~~~a~vGll~f~ 782 (1003)
..--+-.|..+-.+.++|.
T Consensus 401 ll~fisD~N~~aas~vl~Fv 420 (948)
T KOG1058|consen 401 LLDFISDSNEAAASDVLMFV 420 (948)
T ss_pred HHHHhccCCHHHHHHHHHHH
Confidence 1122345667777777776
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=25.13 E-value=3.1e+02 Score=33.09 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=57.2
Q ss_pred chhhHHHHHHhccchHHHHHHHhccCChhhHH-HHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcC
Q 001859 151 KYQQAMGIAIECRRLDKLEEAITRSDNVHGTL-SYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLD 229 (1003)
Q Consensus 151 ~~~~AigialE~~rld~l~~~i~~~~~~~~~~-~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Ln 229 (1003)
.+++-=+.||...++++-+++..+..++.+++ +|+ ++ .+ .+-|+-+.++..... |+-.+.+|++.+|
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~--~~----g~----~~~L~kl~~~a~~~~--~~n~af~~~~~lg 416 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYS--ST----GD----REKLSKLAKIAEERG--DINIAFQAALLLG 416 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHH--HC----T-----HHHHHHHHHHHHHTT---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHH--Hh----CC----HHHHHHHHHHHHHcc--CHHHHHHHHHHcC
Confidence 35555566777778888899988878888875 554 23 22 245666777877766 8999999999999
Q ss_pred ChHHHHHHHHHH
Q 001859 230 EPEGVVSILEKL 241 (1003)
Q Consensus 230 d~~~v~~il~~L 241 (1003)
|.+...++|.+.
T Consensus 417 d~~~cv~lL~~~ 428 (443)
T PF04053_consen 417 DVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 999999999884
No 217
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.67 E-value=5.1e+02 Score=32.11 Aligned_cols=23 Identities=4% Similarity=0.299 Sum_probs=19.0
Q ss_pred HHHHHHHhcCchhhHHHHHHhcc
Q 001859 141 RMLDKCITDGKYQQAMGIAIECR 163 (1003)
Q Consensus 141 ~~~~~~~~~~~~~~AigialE~~ 163 (1003)
+++..++++++..+||.++....
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34558999999999999998765
No 218
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=22.22 E-value=1.3e+02 Score=27.26 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred hHHHHHhhhhccch-------HhHHHHHHhhcccCCchhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001859 457 GALYALGLIHANHG-------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDI 513 (1003)
Q Consensus 457 GAl~ALGLI~~g~~-------~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L 513 (1003)
+|+.|+|-|.+... .+++..+.+..++...-.+|.-+..+||++..-..-.++++.+
T Consensus 6 aaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 6 AALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
No 219
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.19 E-value=1.4e+02 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 001859 219 LSICQCLMFLDEPEGVVSILEKLLRS 244 (1003)
Q Consensus 219 ~~~~~~~i~Lnd~~~v~~il~~L~~~ 244 (1003)
++..+.++.++|.+..+++|+.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35678899999999999999999853
No 220
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.01 E-value=82 Score=38.95 Aligned_cols=66 Identities=14% Similarity=0.327 Sum_probs=29.0
Q ss_pred hcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCchhHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 001859 44 TSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASI 117 (1003)
Q Consensus 44 ~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~esL~yaL~ag~~fd~~~~~eYv~~l~~~~id~y~~~ 117 (1003)
+.+.++-.++.+..++...|+.+ -++++=+..-|.|.+||.|+..||+. ..|+.++-.++++|...
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~-~~~~~~~~~~~~~g~AL~~~~ra~d~-------~~v~~i~~~ll~~~~~~ 471 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREIC-KILGQRLLKEGRYGEALSWFIRAGDY-------SLVTRIADRLLEEYCNN 471 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHhcC
Confidence 34666677777777765555555 44444444457889999999999864 44555555555666543
No 221
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.78 E-value=1.6e+03 Score=28.78 Aligned_cols=91 Identities=9% Similarity=-0.040 Sum_probs=57.9
Q ss_pred HHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhcccCCchhHHHHHHHHHH
Q 001859 419 TAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLG 498 (1003)
Q Consensus 419 taSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLG 498 (1003)
-.+=-.++.|..+++...++.-+.- ..++..+=..++..|.-.++.++|+......|.... +.-.+--.+|.-
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~ 163 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence 3444455678888888877766663 456777777778888888888888888888887532 222223333333
Q ss_pred HHhcCCCCHHHHHHHHHhh
Q 001859 499 LAALGTADEDIYDDIKNVL 517 (1003)
Q Consensus 499 la~~Gs~~e~~~e~L~~~L 517 (1003)
+...|-. +++.+....++
T Consensus 164 l~~~g~~-~~A~~~y~~~~ 181 (694)
T PRK15179 164 WDEIGQS-EQADACFERLS 181 (694)
T ss_pred HHHhcch-HHHHHHHHHHH
Confidence 4444543 56666666666
No 222
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=21.47 E-value=95 Score=30.82 Aligned_cols=30 Identities=17% Similarity=0.504 Sum_probs=25.2
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHHHhhhh
Q 001859 11 GLLAMLNESHPSLKLHALSNLNSFVDQFWP 40 (1003)
Q Consensus 11 ~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ 40 (1003)
-|+.|+..+|++++..||..+-.+|-+.|.
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 378899999999999999999999999883
No 223
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=20.56 E-value=8.1e+02 Score=26.19 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=50.9
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHHhhhhHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHH-ccccCCc-hhHHHHHhh
Q 001859 12 LLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQLAALLVSKV-FYYLGEL-NDSLSYALG 89 (1003)
Q Consensus 12 ~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skv-y~~lge~-~esL~yaL~ 89 (1003)
.+..+.+.|.+. ...+......||..+.+|...+-.+-.... .+ +.+.|.+.+.+-..- +-.+||+ .+..+++..
T Consensus 39 ~~~al~~~d~~~-~~~i~~~e~~id~l~~~I~~~l~~~l~~~~-~~-~~d~~~~~~~~~i~~~lERIgD~~~nia~~~~~ 115 (236)
T PRK11115 39 AITAMHNQDAEL-AKRVIEGDHKVNMMEVAIDEACVRIIAKRQ-PT-ASDLRLVMAIIKTIADLERIGDVADKIARTALE 115 (236)
T ss_pred HHHHHHhCCHHH-HHHHHHChHHHHHHHHHHHHHHHHHHHhcC-Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666553 355666778888888888877665533322 11 222444433322222 2356776 344455554
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHHHH
Q 001859 90 AGSLFDVSEDSDYVHTLLAKAIDEYAS 116 (1003)
Q Consensus 90 ag~~fd~~~~~eYv~~l~~~~id~y~~ 116 (1003)
..+ .....-.+.++.+...+.+.+..
T Consensus 116 ~~~-~~~~~~~~~l~~l~~~v~~~l~~ 141 (236)
T PRK11115 116 KFS-QQHQPLLVSLESLGRHTIQMLHD 141 (236)
T ss_pred hcc-CCCCcchHHHHHHHHHHHHHHHH
Confidence 211 11112234566666666655543
No 224
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.01 E-value=6.9e+02 Score=31.54 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=67.2
Q ss_pred HHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHHHHHHHhHhccCChhhHHHHHHHHhcC--CChhhHHHHHHHHHHh
Q 001859 528 AGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRD--QDPILRYGGMYALALA 604 (1003)
Q Consensus 528 AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~~algLgLl~~G~~e~ad~lie~L~~~--~d~i~R~~a~~alglA 604 (1003)
|=+|||+||.-++.-+-. --++-+.+......+-.+.+|..+-..|+.|.+-.+++.-... .+|..||--+..
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i---- 566 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI---- 566 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH----
Confidence 779999999988755444 2334455554334444445666666778888887777765543 477777765433
Q ss_pred hcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcCCCCC
Q 001859 605 YSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPE 646 (1003)
Q Consensus 605 yaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~g~~e 646 (1003)
+.+.+.....-..|..+..-+-++---.+.+|.-..-+|+..
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 334455444344444444434444455666666555555544
Done!