Query 001859
Match_columns 1003
No_of_seqs 295 out of 795
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 16:57:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001859.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1154-1158//hhsearch_pdb/001859hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 1.0 1 1 1987.2 71.3 918 3-1003 11-949 (963)
2 4ady_A RPN2, 26S proteasome re 1.0 1 1 449.3 40.9 549 132-782 68-675 (963)
3 1oyz_A Hypothetical protein YI 1.0 1 1 117.1 20.8 220 472-711 23-250 (280)
4 1oyz_A Hypothetical protein YI 1.0 1 1 104.2 23.9 237 451-707 36-278 (280)
5 3ltm_A Alpha-REP4; protein eng 1.0 1 1 101.0 18.0 125 575-712 80-204 (211)
6 4b8j_A Importin subunit alpha- 1.0 1 1 96.7 19.7 89 624-712 297-401 (528)
7 3ltj_A Alpharep-4; protein eng 1.0 1 1 94.8 19.3 183 473-710 15-197 (201)
8 1b3u_A Protein (protein phosph 1.0 1 1 93.9 20.3 273 473-753 282-586 (588)
9 1b3u_A Protein (protein phosph 1.0 1 1 93.4 21.1 256 451-709 294-585 (588)
10 3ltm_A Alpha-REP4; protein eng 1.0 1 1 93.1 19.2 188 542-757 18-206 (211)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=1.00 E-value=1 Score=1987.20 Aligned_cols=918 Identities=42% Similarity=0.703 Sum_probs=853.7
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 55566378897630589964779999999998975536743018799998603688988899999999887133589145
Q 001859 3 ATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELND 82 (1003)
Q Consensus 3 ~~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~~~~~ie~lyed~~f~~~~r~laA~v~Skvy~~lg~~~~ 82 (1003)
+.++|+|+|+|+||+|+|++||.|||++|+.+||++|+||++++++||.||||++|+ +|+|||||+||||||||+|++
T Consensus 11 ~~~~~~a~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~eia~~i~~ie~l~ed~~f~--~r~laalvaSkvyy~Lg~~~~ 88 (963)
T 4ady_A 11 GSSLTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFS--DREMAALIASKVYYNLGEYES 88 (963)
T ss_dssp ----CCSHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHSCTTCT--THHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHEECCCHHH
T ss_conf 521665899999865996689999999999888601999983288999997689961--688999999888302366689
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 798776149988999984589999999999999998542105553---37940589999999999998249536687798
Q 001859 83 SLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDE---AANVDPRLEAIVERMLDKCITDGKYQQAMGIA 159 (1003)
Q Consensus 83 sL~yaL~ag~~fd~~~~~eYv~tl~~~~id~y~~~~~~~~~~~~~---~~~id~~L~~iv~~i~~~~~~~~~~~~Aigia 159 (1003)
||+|||+||++||+++.||||+||+++|||+|++.+++.++.+.. ...+|+||+.||++||+||++||+|+||||||
T Consensus 89 al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~AvdLa 168 (963)
T 4ady_A 89 AVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIA 168 (963)
T ss_dssp HHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999857986788885357999999999999999863035543222334568899999999999998489899887899
Q ss_pred HHCCCHHHHHHHHHC------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
Q ss_conf 750443789999821------58946589999973225779967899999999999933999658889788874589478
Q 001859 160 IECRRLDKLEEAITR------SDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEG 233 (1003)
Q Consensus 160 lE~~rld~l~~~i~~------~~~~~~~~~Y~~~~~~~~~~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~ 233 (1003)
+|+||||+|+++|++ ++|+.|+|+|+++||+++++|++||++||+++++||++++.|||+++|||+++|||++.
T Consensus 169 lE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD~~l 248 (963)
T 4ady_A 169 LEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGL 248 (963)
T ss_dssp HHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99823999999998531244546689999999998523699847899999999999980781239999999997599889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 99999998733587619988654220220037999999873099999999877889999999988999712332103798
Q 001859 234 VVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGT 313 (1003)
Q Consensus 234 v~~il~~l~~~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1003)
++++|.+|+. +++.+++|||||||+++++|+|+.++.+.|+..
T Consensus 249 i~~if~~l~~---~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~---------------------------------- 291 (963)
T 4ady_A 249 ALQLFKKLKE---ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQ---------------------------------- 291 (963)
T ss_dssp HHHHHHHHHT---TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHT----------------------------------
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC----------------------------------
T ss_conf 9999998772---643888999999971021367999998743333----------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 89988777899146899997877861027875167559997623875123256543210255322313799999985238
Q 001859 314 PASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAG 393 (1003)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~kl~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~k~~ld~~~s~~~~A~~~~nafmnaG 393 (1003)
..++++++||+|+.++++|++||+++|++|+++|+++|+++|+|+|++|+|++|||||||||
T Consensus 292 ------------------e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG 353 (963)
T 4ady_A 292 ------------------GYDPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAG 353 (963)
T ss_dssp ------------------TCCHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTT
T ss_pred ------------------CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf ------------------00689999867997389999999865654300088998630321467879999988887278
Q ss_pred CCCCHHHCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 88613210011466741112469999986554379710232101366668999999998720348999765312661769
Q 001859 394 TTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGI 473 (1003)
Q Consensus 394 t~~D~flr~nl~Wl~k~~~w~kfsAtaSLG~Ih~G~~~~~l~~L~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~a 473 (1003)
||+|+|+|+|++|++|+++|+||+|++|+|+||.||.++++.+|++|||++ +++++|+++||++|||+||+|+++++
T Consensus 354 ~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~---~s~~~~ik~GAllaLGli~ag~~~~~ 430 (963)
T 4ady_A 354 TTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGS---RASSRFIKGGSLYGLGLIYAGFGRDT 430 (963)
T ss_dssp TCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTS---CCSCHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 775424320305440464089999998700100385488999999862456---79719999999999898628971799
Q ss_pred HHHHHHHCCCCC-------CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH-
Q ss_conf 999985301598-------056899999999998448999879999998531798455899999975666179845899-
Q 001859 474 KQFLRDSLRSTN-------VEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG- 545 (1003)
Q Consensus 474 l~~L~~~L~~~~-------~~~vr~GA~LGLGla~~Gt~~e~v~e~L~~~L~~Ds~~~~e~AalaLGLI~~Gs~n~~v~- 545 (1003)
+++|.++|.+++ ++.+|+||++|||++++|++|+++++.|+++|..|+++.+++|++|||+||+||||.+++
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~ 510 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIH 510 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999987076633345654899999999989986678988999999999956778789999999763512568899999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99998631286358889999875721689235999999982299814577899999986517887999999999983298
Q 001859 546 EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDV 625 (1003)
Q Consensus 546 ~LL~~~~et~~e~i~r~~algLgLi~~G~~e~a~~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~ 625 (1003)
.|++++.++++++++|++++|||++++|++++++.+++.|..+++|++||++++++||||+||||+.+|++|||.|++|.
T Consensus 511 ~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~ 590 (963)
T 4ady_A 511 DMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS 590 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999862584899999999987550798677999999997178788879999999998617898999999998724487
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 82589799999843217998876899999751089103688999998873489938899987000489806799899999
Q 001859 626 SDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIA 705 (1003)
Q Consensus 626 ~ddvrr~AvlaLGlI~~g~~e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AiiA 705 (1003)
+++|||+||+|||+|++|+++++++++++|.+++||+||||+++|||++|+|||++++|++|+++++|+|++|||+|++|
T Consensus 591 ~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 591 NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 47999999999875206987779999999986698889998999998754699857999999998069978999999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCHHHHHHHHHHHHH
Q ss_conf 99985036644564199999999999862038924698889976422069981378763-68888766689999999876
Q 001859 706 MAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLL-SKTKHDKITAVVGLSVFSQF 784 (1003)
Q Consensus 706 LGlI~~g~~~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAlGLl~aGg~n~tisl~-s~~~~~~~~aivGl~~f~q~ 784 (1003)
||+||+|+||+.+|++++++|+|.+++.++|+|+++|||+++||||+||||||+||+|+ +++|++++.|++||++|+||
T Consensus 671 LG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~ 750 (963)
T 4ady_A 671 LSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQF 750 (963)
T ss_dssp HHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTT
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99982578643246899999999999724464588899999998777507995588762166788779999999999999
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 767999997720258747872169-9998808886288899777899999997657644543000178999999988899
Q 001859 785 WYWYPLIYFISLSFSPTALIGLNY-DLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAE 863 (1003)
Q Consensus 785 wyw~pl~~~lsla~~P~~li~ld~-~l~~p~~~~~~~~~ps~f~yp~~~~~~~~~~~~k~~tavLS~t~k~~~r~~~~~~ 863 (1003)
||||||+|||++||+||++||||+ |||||+|+|+||+|||+|+|||+++++++|+++||+|||||||||+|+|+|++++
T Consensus 751 wyw~pl~~~lsla~~Pt~li~l~e~dL~~p~~~~~~~~~~~~f~yp~~~~~~~~~~~~~~~tavls~t~k~~~r~~~~~~ 830 (963)
T 4ady_A 751 WYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKK 830 (963)
T ss_dssp TTCGGGGGGGGGGEEECBEEEEETTTTBEECCEEEECSCTTTTCCCCC--------------------------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHH
T ss_conf 99889999999855886798765001677755876589935337998767420134533351120477899998864144
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCC--C
Q ss_conf 88887532200134435889999865799888899988778999994322597655523224066058998110336--9
Q 001859 864 QKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS--A 941 (1003)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~--~ 941 (1003)
++..++. ..+|+++..++....+++++++.+++.++++++++||++++|+|||||+|+|+|||+|++++||+|||+ .
T Consensus 831 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~n~~rv~~~q~~~~~~~~~~r~~p~~~~~~ 909 (963)
T 4ady_A 831 EKGPNEE-EKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKG 909 (963)
T ss_dssp -----------------------------------------CCCSSCEEEETTSBCCTTGGGGEECCSSSSEEESSCCCS
T ss_pred HHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHCEEECCCCCCCCCCCCCCC
T ss_conf 3201222-222232211111113332210135554100135679972234785646888709463588997000124788
Q ss_pred CCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98179971289998641000269998888999998777679876556799999999984589
Q 001859 942 PSGFVLLRDLRPNEPEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1003 (1003)
Q Consensus 942 ~~gii~l~d~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1003 (1003)
++|||||+|++|+||+++++++++. +++||||||||||++
T Consensus 910 ~~g~~~l~d~~p~e~~~~~~~~~~~----------------------~~~~~~~p~~f~~~~ 949 (963)
T 4ady_A 910 NNGVVVLRDREPKEPVALIETVRQM----------------------KDVNAPLPTPFKVDD 949 (963)
T ss_dssp SSEEEEEEESCTTSCCCEECCHHHH----------------------HC-------------
T ss_pred CCCEEEEECCCCCCCHHHHHCCCCC----------------------CCCCCCCCCCCCCCC
T ss_conf 8755997269999627877413433----------------------578899897960786
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=1.00 E-value=1 Score=449.28 Aligned_cols=549 Identities=19% Similarity=0.266 Sum_probs=360.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-------HHHHHHHHCC-CCHHHHHHHHHHHCC----CCCCCHHHH
Q ss_conf 0589999999999998249536687798750443-------7899998215-894658999997322----577996789
Q 001859 132 DPRLEAIVERMLDKCITDGKYQQAMGIAIECRRL-------DKLEEAITRS-DNVHGTLSYCINVSH----SFVNRREYR 199 (1003)
Q Consensus 132 d~~L~~iv~~i~~~~~~~~~~~~AigialE~~rl-------d~l~~~i~~~-~~~~~~~~Y~~~~~~----~~~~~~~fr 199 (1003)
+.+|-++|-.-|-|++ ++|.+|+-.||.+..+ +.++.+|.++ +.|.++..--..-.. ....++..
T Consensus 68 ~r~laalvaSkvyy~L--g~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL- 144 (963)
T 4ady_A 68 DREMAALIASKVYYNL--GEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKL- 144 (963)
T ss_dssp THHHHHHHHHHHHHHH--TCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHH-
T ss_pred HHHHHHHHHHHHHEEC--CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH-
T ss_conf 6889999998883023--6668999999857986788885357999999999999999863035543222334568899-
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCCHHHHHH--HHHCCCCCHH--HHHHHHHH
Q ss_conf 9999999999933999658889788874589478999999987335--8761998865--4220220037--99999987
Q 001859 200 REVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSE--NKDDALLAFQ--IAFDLVENEH--QAFLLNVR 273 (1003)
Q Consensus 200 ~~vL~~l~~iy~~~~~~dy~~~~~~~i~L~d~~~v~~il~~l~~~~--~~~~~l~ayQ--iafdL~~~~~--q~fl~~v~ 273 (1003)
..+.+-++.-+++.+ .|.++|-+++-...-+.+.+++++.++.. +.-..++.|- ++-.+..... .++|.-..
T Consensus 145 ~~Lv~~iv~~cl~hn--ae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~ 222 (963)
T 4ady_A 145 TSIFERMIEKCLKAS--ELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSF 222 (963)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999999998489--899887899998239999999985312445466899999999985236998478999999999
Q ss_pred H---CCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 3---099--99999987788999999998899971233210379889988777899146899997877861027875167
Q 001859 274 D---HLP--VPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQ 348 (1003)
Q Consensus 274 ~---~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~IL~~~~~~~ 348 (1003)
. .++ +++. .-.-.+..+| .+...+.| .++.+ .......
T Consensus 223 ~Iy~k~~~~dy~~---------------------a~~~ai~LnD-----------~~li~~if---~~l~~--~~d~l~a 265 (963)
T 4ady_A 223 DFLMNMPNCDYLT---------------------LNKVVVNLND-----------AGLALQLF---KKLKE--ENDEGLS 265 (963)
T ss_dssp HHHHHSSSCCHHH---------------------HHHHHHHHTC-----------HHHHHHHH---HHHHT--TCCHHHH
T ss_pred HHHHHCCCHHHHH---------------------HHHHHHHCCC-----------HHHHHHHH---HHHHH--CCCHHHH
T ss_conf 9998078123999---------------------9999997599-----------88999999---98772--6438889
Q ss_pred HHHHHH-HHCCCCCHH--H---------HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHCC----
Q ss_conf 559997-623875123--2---------565432102553223137999999852388861321001146674111----
Q 001859 349 LTLQFL-YSHNKSDLL--I---------LKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATN---- 412 (1003)
Q Consensus 349 l~~~fl-~~~~~~d~~--~---------l~~~k~~ld~~~s~~~~A~~~~nafmnaGt~~D~flr~nl~Wl~k~~~---- 412 (1003)
...-|. .++..-.++ + .++..+-+.+ ....-+-+.|.+-.-..|..+-++ +|..-
T Consensus 266 yQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg-----~~~~~Lyl~FL~~~n~~d~~~l~~----~K~~ld~r~ 336 (963)
T 4ady_A 266 AQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSG-----LPTCDYYNTFLLNNKNIDIGLLNK----SKSSLDGKF 336 (963)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTS-----HHHHHHHHHHHHHHCCCCHHHHHH----HHHHSCTTS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCC-----CCHHHHHHHHHHHCCCCCHHHHHH----HHHHHCCHH
T ss_conf 99999971021367999998743333006899998679-----973899999998656543000889----986303214
Q ss_pred -HHHHHHHHHHHHHCCCCCHHHH-HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCCHH
Q ss_conf -2469999986554379710232-1013666689999999987203489997653126617699999853015--98056
Q 001859 413 -WAKFSATAGLGVIHRGHLQQGR-SLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS--TNVEV 488 (1003)
Q Consensus 413 -w~kfsAtaSLG~Ih~G~~~~~l-~~L~~yL~~~~~~~~~~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~~--~~~~~ 488 (1003)
-....++.++|+||.|++.|.+ ....+|++++ ++|+++||++|||+||.|+.++++++|.+||.. +++++
T Consensus 337 s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~------~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ 410 (963)
T 4ady_A 337 SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA------QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRF 410 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC------CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHCC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 6787999998888727877542432030544046------4089999998700100385488999999862456797199
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHCCCHHH
Q ss_conf 899999999998448999879999998531798--------455899999975666179845899999-98631286358
Q 001859 489 IQHGACLGLGLAALGTADEDIYDDIKNVLYTDS--------AVAGEAAGISMGLLMVGTASEKAGEML-TYAHETQHEKI 559 (1003)
Q Consensus 489 vr~GA~LGLGla~~Gt~~e~v~e~L~~~L~~Ds--------~~~~e~AalaLGLI~~Gs~n~~v~~LL-~~~~et~~e~i 559 (1003)
+++||++|||++++|+++ ++++.|.+.|.+++ ...+.+|++|||++|+||+|+++++.| ..+.
T Consensus 411 ik~GAllaLGli~ag~~~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~------- 482 (963)
T 4ady_A 411 IKGGSLYGLGLIYAGFGR-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLY------- 482 (963)
T ss_dssp HHHHHHHHHHHHTTTTTH-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHCCCCCH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-------
T ss_conf 999999998986289717-999999998707663334565489999999998998667898899999999995-------
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 88999987572168923599999998229981457789999998651788799999999998329882589799999843
Q 001859 560 IRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGF 639 (1003)
Q Consensus 560 ~r~~algLgLi~~G~~e~a~~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~AvlaLGl 639 (1003)
+++++.|+++++++|++|+||||+.+++.||++++++.++++||++++||||
T Consensus 483 ----------------------------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 483 ----------------------------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp ----------------------------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf ----------------------------6778789999999763512568899999999998625848999999999875
Q ss_pred HCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 2179988768999997510891036889999988734899388999-870004898067998999999998503664456
Q 001859 640 VLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS-LLEPLTSDVVDFVRQGALIAMAMVMVQINEAND 718 (1003)
Q Consensus 640 I~~g~~e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~~aI~-lL~~l~~D~dd~Vrq~AiiALGlI~~g~~~a~~ 718 (1003)
|++|+++.++.+++.|..++||++|||+++++||+||||||+.+|+ +|+.+.+|.+++|||+|++|||+|++|+++. +
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~-v 613 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT-V 613 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS-H
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHH-H
T ss_conf 507986779999999971787888799999999986178989999999987244874799999999987520698777-9
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCE----EEEEC--CCCCCCCHHHHHHHHHHH
Q ss_conf 41999999999998620389246988899764220699813----78763--688887666899999998
Q 001859 719 SRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNV----TIRLL--SKTKHDKITAVVGLSVFS 782 (1003)
Q Consensus 719 pkv~~~lr~L~~~~~~~~~d~~~rfga~lAlGLl~aGg~n~----tisl~--s~~~~~~~~aivGl~~f~ 782 (1003)
|++ .+.|. ++.|+++|+|+++|+|++++|+++. +++.. .....+++.|+.+|.+..
T Consensus 614 ~rl---v~~L~-----~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 614 PRI---VQLLS-----KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHH---TTTGG-----GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHH---HHHHH-----HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999---99998-----669888999899999875469985799999999806997899999999999982
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=117.08 Aligned_cols=220 Identities=14% Similarity=0.112 Sum_probs=149.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH---HHH
Q ss_conf 69999985301598056899999999998448999879999998531798455899999975666179845899---999
Q 001859 472 GIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG---EML 548 (1003)
Q Consensus 472 ~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gt~~e~v~e~L~~~L~~Ds~~~~e~AalaLGLI~~Gs~n~~v~---~LL 548 (1003)
.++..|...|.+ .+..+|..|+.+||-++ ++.++..|...+.+++...+..|+.+||.+ |.....+. .++
T Consensus 23 ~~i~~L~~~L~~-~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l--~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 23 LNDDELFRLLDD-HNSLKRISSARVLQLRG----GQDAVRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNIL 95 (280)
T ss_dssp SCHHHHHHHTTC-SSHHHHHHHHHHHHHHC----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHS--CCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHCCC----CCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCCCHHHHHHH
T ss_conf 507999999982-89799999999987158----804999999987499899999999999985--43531316899999
Q ss_pred H-HHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 9-8631286358889999875721689----2359999999822998145778999999865178879999999999832
Q 001859 549 T-YAHETQHEKIIRGLALGIALTVYGR----EEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVS 623 (1003)
Q Consensus 549 ~-~~~et~~e~i~r~~algLgLi~~G~----~e~a~~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vs 623 (1003)
. .+....+..+++.++.+||.+..+. ++.++.+++. ..++++.+|..++.++| ..|+..++..|+.. ..
T Consensus 96 ~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~-l~d~~~~vR~~a~~aL~----~~~~~~~~~~L~~~-l~ 169 (280)
T 1oyz_A 96 NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQIT-AFDKSTNVRRATAFAIS----VINDKATIPLLINL-LK 169 (280)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-TTCSCHHHHHHHHHHHH----TC---CCHHHHHHH-HT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHCCCHHHHHHHHHHHH----HCCCHHHHHHHHHH-HC
T ss_conf 99875499899999999999987034771339999999999-61999999999999987----33878789999998-74
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 98825897999998432179988768999997510891036889999988734899388999870004898067998999
Q 001859 624 DVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGAL 703 (1003)
Q Consensus 624 d~~ddvrr~AvlaLGlI~~g~~e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~Ai 703 (1003)
|.+..||+.|+.+||.+....++.++.++..| .+.++.||..++.+||.+ |+..++..|..++.|++ ||..|+
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~~----~~~~~~~~L~~~l~d~~--vr~~a~ 242 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEML-QDKNEEVRIEAIIGLSYR----KDKRVLSVLCDELKKNT--VYDDII 242 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHT----TCGGGHHHHHHHHTSSS--CCHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCC--HHHHHH
T ss_conf 99889999999999862537699999999983-499989999999999983----88736999999852763--999999
Q ss_pred HHHHHHHC
Q ss_conf 99999850
Q 001859 704 IAMAMVMV 711 (1003)
Q Consensus 704 iALGlI~~ 711 (1003)
.+||.++.
T Consensus 243 ~aL~~i~~ 250 (280)
T 1oyz_A 243 EAAGELGD 250 (280)
T ss_dssp HHHHHHCC
T ss_pred HHHHHCCC
T ss_conf 99985596
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=1.00 E-value=1 Score=104.23 Aligned_cols=237 Identities=14% Similarity=0.124 Sum_probs=153.2
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHH-HHCCCCHHHHHHH
Q ss_conf 98720348999765312661769999985301598056899999999998448999-879999998-5317984558999
Q 001859 451 SPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTAD-EDIYDDIKN-VLYTDSAVAGEAA 528 (1003)
Q Consensus 451 ~~~~k~GAl~ALGLI~~g~~~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gt~~-e~v~e~L~~-~L~~Ds~~~~e~A 528 (1003)
+..++..|+.+||.+.. ..++..|...|.+ .+..+|..|+.+||.++..... ..++..|.. .+..++..++..|
T Consensus 36 ~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a 111 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG---QDAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATA 111 (280)
T ss_dssp SHHHHHHHHHHHHHHCC---HHHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCC---CHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 97999999999871588---0499999998749-9899999999999985435313168999999987549989999999
Q ss_pred HHHHHHHHCCC--CCHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99975666179--845899-999986312863588899998757216892359999999822998145778999999865
Q 001859 529 GISMGLLMVGT--ASEKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAY 605 (1003)
Q Consensus 529 alaLGLI~~Gs--~n~~v~-~LL~~~~et~~e~i~r~~algLgLi~~G~~e~a~~lie~L~~~~d~i~R~~a~~alglAy 605 (1003)
+.+||.+..+. ....++ .++.. ....+..+++.++.+||. +|.++.++.+++.| .++++.+|..++.++|..
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~-l~d~~~~vR~~a~~aL~~--~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~- 186 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQIT-AFDKSTNVRRATAFAISV--INDKATIPLLINLL-KDPNGDVRNWAAFAININ- 186 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHH-TTCSCHHHHHHHHHHHHT--C---CCHHHHHHHH-TCSSHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHH-HHCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH-
T ss_conf 9999987034771339999999999-619999999999999873--38787899999987-499889999999999862-
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 17887999999999983298825897999998432179988768999997510891036889999988734899388999
Q 001859 606 SGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAIS 685 (1003)
Q Consensus 606 aGTGn~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~~aI~ 685 (1003)
|..+..++..|+.. ..|.+..||+.|+.+||.+ ++++.++.++..|. ++.||..++.+||.+ |.+.++.
T Consensus 187 -~~~~~~~~~~L~~~-l~d~~~~vR~~A~~aL~~~--~~~~~~~~L~~~l~---d~~vr~~a~~aL~~i----~~~~~~~ 255 (280)
T 1oyz_A 187 -KYDNSDIRDCFVEM-LQDKNEEVRIEAIIGLSYR--KDKRVLSVLCDELK---KNTVYDDIIEAAGEL----GDKTLLP 255 (280)
T ss_dssp -TCCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHT--TCGGGHHHHHHHHT---SSSCCHHHHHHHHHH----CCGGGHH
T ss_pred -CCCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHC---CCCHHHHHHHHHHHC----CCHHHHH
T ss_conf -53769999999998-3499989999999999983--88736999999852---763999999999855----9630569
Q ss_pred HHHHHCC-CCHHHHHHHHHHHHH
Q ss_conf 8700048-980679989999999
Q 001859 686 LLEPLTS-DVVDFVRQGALIAMA 707 (1003)
Q Consensus 686 lL~~l~~-D~dd~Vrq~AiiALG 707 (1003)
.|..+.. +.++.+++.++-+|.
T Consensus 256 ~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 256 VLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999761788079999999864
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=1.00 E-value=1 Score=100.96 Aligned_cols=125 Identities=24% Similarity=0.291 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 23599999998229981457789999998651788799999999998329882589799999843217998876899999
Q 001859 575 EEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSL 654 (1003)
Q Consensus 575 ~e~a~~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~li~~ 654 (1003)
++..+.+++.| .++++.+|..++.+++- .|+..++..|+.. .++.+..||..|+.+||.+ +.++.++.++..
T Consensus 80 ~~~~~~L~~~l-~~~~~~vr~~a~~aL~~----~~~~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~--~~~~~~~~L~~~ 151 (211)
T 3ltm_A 80 ERAVEPLIKAL-KDEDGWVRQSAAVALGQ----IGDERAVEPLIKA-LKDEDWFVRIAAAFALGEI--GDERAVEPLIKA 151 (211)
T ss_dssp GGGHHHHHHHT-TCSSHHHHHHHHHHHHH----HCCGGGHHHHHHH-TTCSSHHHHHHHHHHHHHH--CCGGGHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHH----HCCHHHHHHHHHH-HHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_conf 89999999987-59988999999999998----5769999999998-7398999999999999871--987799999998
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 7510891036889999988734899388999870004898067998999999998503
Q 001859 655 LSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 655 L~~s~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
| .+.++.||..++.+||.+ +.+.++..|..+++|++..||..|+.+|+.+.-.
T Consensus 152 l-~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 152 L-KDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp T-TCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred H-CCCCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 7-599899999999999872----9665899999998599889999999999852788
No 6
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=96.73 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH-------HHHHHH
Q ss_conf 9882589799999843217998---------876899999751089103688999998873489938-------899987
Q 001859 624 DVSDDVRRTAVLALGFVLYSEP---------EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLS-------EAISLL 687 (1003)
Q Consensus 624 d~~ddvrr~AvlaLGlI~~g~~---------e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~-------~aI~lL 687 (1003)
+.++.++..|+-+||-+..+.+ ..++.++..|...+++.+|..++.+|+-+++++... .++..|
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
T ss_conf 88755779999999999729889999999740278999997589968899999999999977999999999977879999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 0004898067998999999998503
Q 001859 688 EPLTSDVVDFVRQGALIAMAMVMVQ 712 (1003)
Q Consensus 688 ~~l~~D~dd~Vrq~AiiALGlI~~g 712 (1003)
..++.+.+..||..|+.+|+-+...
T Consensus 377 ~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 377 VNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 9998148888999999999999748
No 7
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=1.00 E-value=1 Score=94.84 Aligned_cols=183 Identities=23% Similarity=0.302 Sum_probs=107.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999853015980568999999999984489998799999985317984558999999756661798458999999863
Q 001859 473 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAH 552 (1003)
Q Consensus 473 al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gt~~e~v~e~L~~~L~~Ds~~~~e~AalaLGLI~~Gs~n~~v~~LL~~~~ 552 (1003)
....+.+.|.+ .+..+|..|+..||..+ ++.++..|...+.+++...+..|+.+||.+
T Consensus 15 ~~~~~i~~L~~-~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----------------- 72 (201)
T 3ltj_A 15 KVEMYIKNLQD-DSYYVRRAAAYALGKIG----DERAVEPLIKALKDEDAWVRRAAADALGQI----------------- 72 (201)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHC----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-----------------
T ss_pred CHHHHHHHHCC-CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------------
T ss_conf 45899998669-99999999999998507----703899999987399989999999999832-----------------
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 12863588899998757216892359999999822998145778999999865178879999999999832988258979
Q 001859 553 ETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRT 632 (1003)
Q Consensus 553 et~~e~i~r~~algLgLi~~G~~e~a~~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~ 632 (1003)
|.++.++.+++.| .++++.+|..++.+++- .|+..++..|+.. ..+.+..||..
T Consensus 73 --------------------~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~----~~~~~~~~~L~~~-l~d~~~~vr~~ 126 (201)
T 3ltj_A 73 --------------------GDERAVEPLIKAL-KDEDGWVRQSAAVALGQ----IGDERAVEPLIKA-LKDEDWFVRIA 126 (201)
T ss_dssp --------------------CCGGGHHHHHHHT-TCSSHHHHHHHHHHHHH----HCCGGGHHHHHHH-TTCSSHHHHHH
T ss_pred --------------------CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHH----HCCHHHHHHHHHH-HCCCCHHHHHH
T ss_conf --------------------8889999999988-59978999999999997----4868899999999-73998999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999984321799887689999975108910368899999887348993889998700048980679989999999985
Q 001859 633 AVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVM 710 (1003)
Q Consensus 633 AvlaLGlI~~g~~e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AiiALGlI~ 710 (1003)
|+.+||.+ +.++.++.++..+ .+.++.||..++.+||.+ |...++..|..++.|++..||..|+.+|+.+.
T Consensus 127 a~~aL~~~--~~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 127 AAFALGEI--GDERAVEPLIKAL-KDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHH--TCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH--CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999985--8878999999997-599889999999999986----86468999999883898789999999999877
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=93.94 Aligned_cols=273 Identities=13% Similarity=0.094 Sum_probs=134.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCH--------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999853015980568999999999984489998--------7999999853179845589999997566617984589
Q 001859 473 IKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE--------DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA 544 (1003)
Q Consensus 473 al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gt~~e--------~v~e~L~~~L~~Ds~~~~e~AalaLGLI~~Gs~n~~v 544 (1003)
.+..+...+.+ .+..+|..|+.+||.+....+.+ .++..|...+...+..++..++.+||-+.-.-+.+..
T Consensus 282 l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 282 LVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998589-95899999998799999972744436579999999999986199889999999999999888627678
Q ss_pred ----HHH-HHHHHHCCCHHHHHHHHHHHHHHC--CCCHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHH--CCCC--C
Q ss_conf ----999-998631286358889999875721--68923---59999999822998145778999999865--1788--7
Q 001859 545 ----GEM-LTYAHETQHEKIIRGLALGIALTV--YGREE---EADTLIEQMTRDQDPILRYGGMYALALAY--SGTA--N 610 (1003)
Q Consensus 545 ----~~L-L~~~~et~~e~i~r~~algLgLi~--~G~~e---~a~~lie~L~~~~d~i~R~~a~~alglAy--aGTG--n 610 (1003)
..+ +..+. ..++.++..+.-+++-+. +|.+. ..-+.+..+..+++.-+|..++-+++..- .|.. .
T Consensus 361 ~~~l~p~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 439 (588)
T 1b3u_A 361 IEHLLPLFLAQLK-DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD 439 (588)
T ss_dssp HHHTHHHHHHHHT-CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 8889999999837-983689999999899999754989898888999999835998139999999999999880989899
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCC----CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC----
Q ss_conf 99999999998329882589799999843217--998----87689999975108910368899999887348993----
Q 001859 611 NKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY--SEP----EQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGL---- 680 (1003)
Q Consensus 611 ~~aI~~LL~~~vsd~~ddvrr~AvlaLGlI~~--g~~----e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~---- 680 (1003)
...+..++. ...|.+..||..|+.++|.+.- |.. ...+.++ .+..+.++.+|..++.++|.++..-|.
T Consensus 440 ~~l~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~ 517 (588)
T 1b3u_A 440 EKLNSLCMA-WLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517 (588)
T ss_dssp HHHHHHHHH-GGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999998-82598199999999999999999684457888999999-9831898799999999999999766989999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 8899987000489806799899999999850366445641999999999998620389246988899764220
Q 001859 681 SEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILD 753 (1003)
Q Consensus 681 ~~aI~lL~~l~~D~dd~Vrq~AiiALGlI~~g~~~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAlGLl~ 753 (1003)
..++..|..+.+|++..||..|+-++|.+...-.... ....++..+.+.. ...|+.+|..+.-|++-+.
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~p~l~~l~--~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST--LQSEVKPILEKLT--QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH--HHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHH
T ss_conf 9999999866789986279999999999999865364--5999999999874--7996669999999999763
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=93.41 Aligned_cols=256 Identities=13% Similarity=0.033 Sum_probs=152.4
Q ss_pred CCCCHHHHHHHHHHHHCCCH---------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHH
Q ss_conf 98720348999765312661---------7699999853015980568999999999984489998----7999999853
Q 001859 451 SPYSEGGALYALGLIHANHG---------EGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADE----DIYDDIKNVL 517 (1003)
Q Consensus 451 ~~~~k~GAl~ALGLI~~g~~---------~~al~~L~~~L~~~~~~~vr~GA~LGLGla~~Gt~~e----~v~e~L~~~L 517 (1003)
+..++..++.+||.+....+ +..+..+...+.+ .+..+|..++.+||.+....+.+ .+...|...+
T Consensus 294 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l 372 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 372 (588)
T ss_dssp SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 589999999879999997274443657999999999998619-9889999999999999888627678888999999983
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHH----HH-HHHHHHHHCCCHHHHHHHHHHHHHHC--CCCH---HHHHHHHHHHHC
Q ss_conf 17984558999999756661798458----99-99998631286358889999875721--6892---359999999822
Q 001859 518 YTDSAVAGEAAGISMGLLMVGTASEK----AG-EMLTYAHETQHEKIIRGLALGIALTV--YGRE---EEADTLIEQMTR 587 (1003)
Q Consensus 518 ~~Ds~~~~e~AalaLGLI~~Gs~n~~----v~-~LL~~~~et~~e~i~r~~algLgLi~--~G~~---e~a~~lie~L~~ 587 (1003)
..++..++..|..+||.+.-..+... ++ .+...+ ...+..++..++-.++.+. +|.+ +..-+.+..+..
T Consensus 373 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 451 (588)
T 1b3u_A 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV 451 (588)
T ss_dssp TCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 798368999999989999975498989888899999983-5998139999999999999880989899999999998825
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHCC--CCC----CCHHHHHHHHHHC
Q ss_conf 998145778999999865178879999999999---8329882589799999843217--998----8768999997510
Q 001859 588 DQDPILRYGGMYALALAYSGTANNKAIRQLLHF---AVSDVSDDVRRTAVLALGFVLY--SEP----EQTPRIVSLLSES 658 (1003)
Q Consensus 588 ~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~---~vsd~~ddvrr~AvlaLGlI~~--g~~----e~v~~li~~L~~s 658 (1003)
++++.+|..++.+++......|+......++.. +..+.+..+|..++.++|.+.- |.. ...+.++ .++.+
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~-~~l~d 530 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL-RMAGD 530 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHCCC
T ss_conf 98199999999999999999684457888999999983189879999999999999976698999999999998-66789
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 89103688999998873489938----8999870004898067998999999998
Q 001859 659 YNPHVRYGAALAVGISCAGTGLS----EAISLLEPLTSDVVDFVRQGALIAMAMV 709 (1003)
Q Consensus 659 ~np~VR~gaalALGla~aGtg~~----~aI~lL~~l~~D~dd~Vrq~AiiALGlI 709 (1003)
.++.||..++.++|.++..-|.. .++..|..+..|++..||+.|..|++-+
T Consensus 531 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 531 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9862799999999999998653645999999999874799666999999999976
No 10
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=1.00 E-value=1 Score=93.06 Aligned_cols=188 Identities=22% Similarity=0.254 Sum_probs=131.7
Q ss_pred HHHH-HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 5899-999986312863588899998757216892359999999822998145778999999865178879999999999
Q 001859 542 EKAG-EMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHF 620 (1003)
Q Consensus 542 ~~v~-~LL~~~~et~~e~i~r~~algLgLi~~G~~e~a~~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~ 620 (1003)
.+.+ .|+..+. ..+..+++.++..|+. +|.++.++.+++.|. ++++.+|..++.++|- .|+..++..|+..
T Consensus 18 ~~~~~~L~~~L~-~~~~~vR~~A~~~L~~--~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~----~~~~~~~~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-DDSYYVRRAAAYALGK--IGDERAVEPLIKALK-DEDAWVRRAAADALGQ----IGDERAVEPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHH--HCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHH----HCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHH----HCCHHHHHHHHHH
T ss_conf 758999999873-9999999999999987--287108999999882-9999999999999986----5888999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 83298825897999998432179988768999997510891036889999988734899388999870004898067998
Q 001859 621 AVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQ 700 (1003)
Q Consensus 621 ~vsd~~ddvrr~AvlaLGlI~~g~~e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq 700 (1003)
..+.+..||..|+.+||.+ ++++.++.++..| .+.++.||..++.+||.. |...++..|..+++|++..||.
T Consensus 90 -l~~~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~ 161 (211)
T 3ltm_A 90 -LKDEDGWVRQSAAVALGQI--GDERAVEPLIKAL-KDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQ 161 (211)
T ss_dssp -TTCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHH
T ss_pred -HCCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHCCCCHHHHH
T ss_conf -7599889999999999985--7699999999987-398999999999999871----9877999999987599899999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999998503664456419999999999986203892469888997642206998
Q 001859 701 GALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGR 757 (1003)
Q Consensus 701 ~AiiALGlI~~g~~~a~~pkv~~~lr~L~~~~~~~~~d~~~rfga~lAlGLl~aGg~ 757 (1003)
.|+.+||.++. +.+. ..|..++ ++.++.+|..+.-+++-+.-.++
T Consensus 162 ~a~~aL~~~~~-------~~~~---~~L~~~l--~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 162 SAADALGEIGG-------ERVR---AAMEKLA--ETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHCS-------HHHH---HHHHHHH--HHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHCC-------HHHH---HHHHHHH--HCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999987296-------6589---9999998--59988999999999985278888
Done!